BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010881
(498 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/507 (70%), Positives = 410/507 (80%), Gaps = 24/507 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M IKQIQSHLTVSGTL+DPFA G+II FC+ S GD+SH Y LF+ L RT+FIWNTM+
Sbjct: 26 MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTML 85
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R F +K EP +LYK ML + FLPNNYTFSF+L+ACA S L G++ HAQ +RLGWE
Sbjct: 86 RAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWE 145
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+YDFV NGLLHLYA+CNCMD AR+LFD SVNRDV++WT++INGYAKSGQ+ +ARQ+FD+M
Sbjct: 146 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM 205
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEKNAVSWSAMI GY Q+ LF+EALE FN MQ+ GFRPNH IVGALTACAFLGALDQGR
Sbjct: 206 PEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGR 265
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAYVDRN + LD ILGTA+IDMYAKCGC+ETAC VFD M +RDVFA+TSLISGLANH
Sbjct: 266 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG 325
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
SA+AIE+F RMQ EGV PNE SM+ IYGIEP VQHY
Sbjct: 326 HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 385
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GCLVDLLGRAGMLE AK+VVREMP+EPD+YVLGALLNACRVHGDV+LGKETVE L ERSL
Sbjct: 386 GCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSL 445
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
DH GVHVLLSN+YAS QW V KVR+GME+ +V+KVPGCSLIEVDG V EFV+G+ ++V
Sbjct: 446 DHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 505
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNE 483
M+EIVLLL GIDKHLKSL DD N+
Sbjct: 506 FMDEIVLLLLGIDKHLKSLWSEDDDND 532
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/507 (70%), Positives = 410/507 (80%), Gaps = 24/507 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M IKQIQSHLTVSGTL+DPFA G+II FC+ S GD+SH Y LF+ L RT+FIWNTM+
Sbjct: 1 MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTML 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R F +K EP +LYK ML + FLPNNYTFSF+L+ACA S L G++ HAQ +RLGWE
Sbjct: 61 RAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWE 120
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+YDFV NGLLHLYA+CNCMD AR+LFD SVNRDV++WT++INGYAKSGQ+ +ARQ+FD+M
Sbjct: 121 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM 180
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEKNAVSWSAMI GY Q+ LF+EALE FN MQ+ GFRPNH IVGALTACAFLGALDQGR
Sbjct: 181 PEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGR 240
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAYVDRN + LD ILGTA+IDMYAKCGC+ETAC VFD M +RDVFA+TSLISGLANH
Sbjct: 241 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG 300
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
SA+AIE+F RMQ EGV PNE SM+ IYGIEP VQHY
Sbjct: 301 HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 360
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GCLVDLLGRAGMLE AK+VVREMP+EPD+YVLGALLNACRVHGDV+LGKETVE L ERSL
Sbjct: 361 GCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSL 420
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
DH GVHVLLSN+YAS QW V KVR+GME+ +V+KVPGCSLIEVDG V EFV+G+ ++V
Sbjct: 421 DHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 480
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNE 483
M+EIVLLL GIDKHLKSL DD N+
Sbjct: 481 FMDEIVLLLLGIDKHLKSLWSEDDDND 507
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/506 (65%), Positives = 396/506 (78%), Gaps = 26/506 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M QIKQ+ SHL VS + DPFA GKII + S D+SH Y+LF+ L +RTTFIWNT+I
Sbjct: 23 MSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTII 82
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R F EKNE A +LYK ML++ FLPNNYTFSF+LRAC D S VGL HAQVI+LGWE
Sbjct: 83 RIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSP--VGLASHAQVIKLGWE 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
SYDFVLNGL+HLYA + ++ ARKLFD+S RDVI+WT+LINGY KSG + AR++FD+M
Sbjct: 141 SYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQM 200
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N VSWSAMI GYV + +F+EALE FN +QL G RPNHAGIVGALTAC++LG+LD GR
Sbjct: 201 PERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGR 260
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAYVDRNG ELD +LGTA++DMYAKCGCIE ACSVF+ MP++D FA+TSLISGLANH
Sbjct: 261 WIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHG 320
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
QSA AI+LF RMQ E V+PNE MS +YGIEPGVQHY
Sbjct: 321 QSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHY 380
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG+LE AK++VREMP+EPD+YVLGALLN+CRVHGDV+LGKETVESLVER L
Sbjct: 381 GCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVERGL 440
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
DH GVHVLLSN+YAS+ QW+ V KVR+ M +V+KVPGCS IE+DG V EF++G+ + +
Sbjct: 441 DHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEIDGSVSEFIAGDMSYL 500
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGN 482
+E+++L+L GID HLK L DD N
Sbjct: 501 RVEDVMLVLLGIDNHLKFLLLADDTN 526
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/505 (62%), Positives = 388/505 (76%), Gaps = 26/505 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
+ Q+KQIQSHLTV+ TL DP+A KII + S+ L + RLF+CLQ ++TFIWNTM
Sbjct: 24 ISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTM 83
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++ F EKNE ++AF+LYK ML S++LPNN+TFSF++RAC D L +GL H QV++ GW
Sbjct: 84 MQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGW 143
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
ESYDFV NGL+HLYA C MD AR +FDMS+ RDV++WT LI+GY SGQ+ IAR++FD+
Sbjct: 144 ESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDR 203
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPEKN VSW A+I GYV++ FKEALE F MQ+ GFR N A IVGALTACAFLGALDQG
Sbjct: 204 MPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQG 263
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIHAYV R+ + LD +LGTA+IDMYAKCGCIE ACSVFD M +RDV+A+T LISGLANH
Sbjct: 264 RWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANH 323
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
D+S +AI+LF RMQ EGVVPN ESMS Y IEP +QH
Sbjct: 324 DKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQH 383
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVDLLGRAG +E AK+VVREMP++PD+Y LGALL+ACRVHGDV LG+E V+SLV+R
Sbjct: 384 YGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQRC 443
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
LDH GVHVLLSN+YAS ++W K+R+ MED +RK+PGCS IEV+G VCEFV+G+R+
Sbjct: 444 LDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVNGTVCEFVTGDRSY 503
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDD 480
L E+I+ LLFGIDK LKSL F DD
Sbjct: 504 ALEEDIMFLLFGIDKQLKSL-FLDD 527
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 304/468 (64%), Positives = 369/468 (78%), Gaps = 25/468 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS-ASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ QIKQIQ+HLTVSGTL DP+A KII FC+ +S+ LSH YRLF+ L++R+TFIWNT+
Sbjct: 23 ISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTV 82
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR FAEKNEP KA L+K ML S+FLPNNYT+SF+ +AC D + L++GL CH Q I+LGW
Sbjct: 83 IRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGW 142
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E YDFV NGL+H++A CMD ARKLFD+S NRDVI+WT+LINGY ++GQ+ I R++FDK
Sbjct: 143 EFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDK 202
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE+N+VSWSAMI GYV+V F+EALE FN M + GF PNHAGIV A+ ACA LGALDQG
Sbjct: 203 MPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQG 262
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIH Y+ RN ++LD ++G A+IDMYAKCGCIE ACS+F + NRDV YT LISGLANH
Sbjct: 263 RWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANH 322
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
QSA+A+ELF RM EGVVPN E+MS+IYG EP VQH
Sbjct: 323 GQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQH 382
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVDLLGRAG LE AKK+V+EMP++PD+YVLGALLNA RV+GDV+LG+ETVESL + S
Sbjct: 383 YGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLS 442
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
LDH GVHV+LSN+YAS +W+ V +VRRGM D +VRKVPGCSLI+VDG
Sbjct: 443 LDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKVDG 490
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/497 (39%), Positives = 308/497 (61%), Gaps = 24/497 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++++QI + +G + D K++ FC++ + G L++ +F + TF+WNTMI
Sbjct: 31 MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ EP +A LY ML N YTF F+L+AC+ S L HA +I++G+
Sbjct: 91 RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFG 150
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S + N LL++Y+ + AR LFD RD +SW S+I+GY K G+I +A ++F+ M
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N +SW++MI+G V KEAL F+ MQ G + ++ +V L ACA LG LDQG+
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAY+ ++ IE+D ILG +IDMYAKCG +E A VF M + V +T++ISG A H
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+E FM+MQ GV PN ESM I+G +P ++HY
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG+L+ A++++ MP++P+ + GALLNAC +HG+++LGK+ + L++
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
H G ++ L++I+A+ +WN +VRR M++ V K+PGCS+I V+G EF++G+ ++
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 510
Query: 457 LMEEIVLLLFGIDKHLK 473
++EI +L I + L+
Sbjct: 511 QIKEIDHMLEQIVERLR 527
>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
Length = 524
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/455 (47%), Positives = 287/455 (63%), Gaps = 47/455 (10%)
Query: 54 FIWNTMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCL------- 104
F+ N ++R + P+ A L+ ++ R DF PNNYTFSF+L+A AD+S
Sbjct: 42 FLPNQLLRSLLPAH-PLGALRLFPRLRRIIPDFRPNNYTFSFLLKAAADSSAPPYLEPES 100
Query: 105 -----FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR---DVIS 156
+ HA + L W+++ +V NGL+H YAT + AR+LF +V DV S
Sbjct: 101 PFGSHAIVPCLHALAVVLAWDAHAYVANGLIHAYATHGVLPAARRLFGGAVASRAADVCS 160
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
WTSL+ AK+G + AR +FD MP +N V+WSAM++ YV F +A+ F M
Sbjct: 161 WTSLLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCV 220
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYV---DRNGIELDIILGTAIIDMYAKCGCIET 273
RPN A +VG LTAC LGALDQGRW+HA + +G+ +D ++ TA++DMYAKCG +ET
Sbjct: 221 RPNRAAVVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSLET 280
Query: 274 ACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
A VF + P RDVFAYT++ISGL++H + AI+LF +M +EGV PNE
Sbjct: 281 ARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQMLVEGVRPNEVTFICVLTAC 340
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
SM ++G+EPGV+HYGCLVD+LGRAG L A + VR MP+ PD+YV
Sbjct: 341 GRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDVLGRAGQLADALEAVRSMPMRPDSYV 400
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
LGALLNAC HGDV+ G++ V L E LDH GVHV LSN+YA +W V KVRR ME+
Sbjct: 401 LGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWGKWEEVLKVRRDMEE 460
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIV 462
V KVPGCS++EV GVVCEFV+G+R++ LM EI+
Sbjct: 461 RRVAKVPGCSMLEVGGVVCEFVAGDRSHPLMPEIM 495
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 109/274 (39%), Gaps = 38/274 (13%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ G + LF + R W+ M+ + A L++ MLRS PN
Sbjct: 169 AKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCVRPNRAAVV 228
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDF---VLNGLLHLYATCNCMDPARKLFDMS 149
+L AC L G HA ++ G V L+ +YA C ++ AR++F +
Sbjct: 229 GVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSLETARQVFAAA 288
Query: 150 V--NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
RDV ++T++I+G + G+ EA++
Sbjct: 289 PRGQRDVFAYTAMISGLSDHGRCG-------------------------------EAIDL 317
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYA 266
F M + G RPN + LTAC G + + + + + +G+E + ++D+
Sbjct: 318 FGQMLVEGVRPNEVTFICVLTACGRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDVLG 377
Query: 267 KCGCIETACSVFDSMPNR-DVFAYTSLISGLANH 299
+ G + A SMP R D + +L++ A H
Sbjct: 378 RAGQLADALEAVRSMPMRPDSYVLGALLNACAAH 411
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/497 (39%), Positives = 307/497 (61%), Gaps = 24/497 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++++QI + +G + D K++ FC++ + G L++ +F + TF+WNTMI
Sbjct: 31 MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ EP +A LY ML N YTF F+L+AC+ S HA +I++G+
Sbjct: 91 RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFG 150
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S + N LL++Y+ + AR LFD RD +SW S+I+GY K G+I +A ++F+ M
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N +SW++MI+G V KEAL F+ MQ G + ++ +V L ACA LG LDQG+
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAY+ ++ IE+D ILG +IDMYAKCG +E A VF M + V +T++ISG A H
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+E FM+MQ GV PN ESM I+G +P ++HY
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG+L+ A++++ MP++P+ + GALLNAC +HG+++LGK+ + L++
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
H G ++ L++I+A+ +WN +VRR M++ V K+PGCS+I V+G EF++G+ ++
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 510
Query: 457 LMEEIVLLLFGIDKHLK 473
++EI +L I + L+
Sbjct: 511 QIKEIDHMLEQIVERLR 527
>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
Length = 514
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/472 (44%), Positives = 288/472 (61%), Gaps = 51/472 (10%)
Query: 54 FIWNTMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCL------- 104
F+ N ++R + P+ A L+ ++ R DF PNNYTFSF+L+A AD+S
Sbjct: 40 FLPNQLLRSLIPAH-PLGALRLFPRLRRIFPDFRPNNYTFSFLLKAAADSSAPPSLGPDY 98
Query: 105 -----FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD---MSVNRDVIS 156
+ HA + L W+++ +V NGL+H YAT + AR+LF+ S DV S
Sbjct: 99 PFGAHAIVPSLHALAVVLAWDAHAYVANGLIHAYATHGVVPSARRLFEDALASRAADVCS 158
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
WTSL+ AK+GQ+ AR +FD MP +N V+WSAM++ YV F +A+ F M G
Sbjct: 159 WTSLLTACAKAGQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFEDMLRSGV 218
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYV------DRNGIELDIILGTAIIDMYAKCGC 270
RPN A +VG L AC LGALDQGRW+HA + +D ++ TA++DMYAKCG
Sbjct: 219 RPNRAAVVGVLAACGALGALDQGRWVHALLVSGTHGGDGATAMDGVVATALVDMYAKCGS 278
Query: 271 IETACSVFDSMP---NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------ 321
++TA VF + RDVFAYT++ISGL++H + AI+LF +MQ EGV PNE
Sbjct: 279 LDTARQVFAAAAPRSQRDVFAYTAMISGLSDHGRCGEAIDLFGQMQAEGVRPNEVTFICV 338
Query: 322 ------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
SM+ ++G+EPGV+HYGCLVD+LGRAG+L A + VR M + P
Sbjct: 339 LTACGRAGLVGRAKEVFRSMAAVHGMEPGVEHYGCLVDVLGRAGLLAEAMETVRSMTMRP 398
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
D YVLGALLNAC HGDV+ G++ V L E LDH GVHV LSN+YA +W V KVRR
Sbjct: 399 DAYVLGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWSKWEEVLKVRR 458
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
M+ +V KVPGCS++EVDGV EFV+G+R++ M+EI+ + + L+ L
Sbjct: 459 TMDQRKVAKVPGCSMLEVDGVASEFVAGDRSHPRMQEIMSAIRDLHGQLRQL 510
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 42/275 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R W+ M+ + A L++ MLRS PN +L
Sbjct: 170 GQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFEDMLRSGVRPNRAAVVGVL 229
Query: 96 RACADTSCLFVGLICHAQVIRL-----GWESYD-FVLNGLLHLYATCNCMDPARKLFDMS 149
AC L G HA ++ G + D V L+ +YA C +D AR++F +
Sbjct: 230 AACGALGALDQGRWVHALLVSGTHGGDGATAMDGVVATALVDMYAKCGSLDTARQVFAAA 289
Query: 150 V---NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
RDV ++T++I+G + G+ EA++
Sbjct: 290 APRSQRDVFAYTAMISGLSDHGRCG-------------------------------EAID 318
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILGTAIIDMY 265
F MQ G RPN + LTAC G + + + + + +G+E + ++D+
Sbjct: 319 LFGQMQAEGVRPNEVTFICVLTACGRAGLVGRAKEVFRSMAAVHGMEPGVEHYGCLVDVL 378
Query: 266 AKCGCIETACSVFDSMPNR-DVFAYTSLISGLANH 299
+ G + A SM R D + +L++ A H
Sbjct: 379 GRAGLLAEAMETVRSMTMRPDAYVLGALLNACAAH 413
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/537 (38%), Positives = 307/537 (57%), Gaps = 65/537 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFA----VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIW 56
+K +KQI H ++ T+ P A ++ C+ S D + L L+ ++
Sbjct: 50 IKGLKQI--HASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLY 107
Query: 57 NTMIRGFA-EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
N +IRG A N+ I+ +YKQML +P+NYT F+L+ACA++ + G H Q I
Sbjct: 108 NAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAI 167
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG------- 168
++G S +V N L+ +YA C+ + ARK+FD S RD++SWT++I GY K G
Sbjct: 168 KMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVG 227
Query: 169 ---------------------------QISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
+ AR++F +MP KN VSW++MI+G Q F
Sbjct: 228 LYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQF 287
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
KE+L F MQ G +P+ +V L +CA LG L+ G+W+HAY+DRN I D +G A+
Sbjct: 288 KESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNAL 347
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
+DMYAKCG I+ AC VF +M +DV++YT++I GLA H Q A++LF M G+ P+
Sbjct: 348 VDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDE 407
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
E MS IY + P ++HYGC+VDLLGRAG++ A++ +R
Sbjct: 408 VTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIR 467
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MPIEPD +VLGALL AC++HG V+LG+ ++ + + +G +VL+SNIY+S +W
Sbjct: 468 NMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRD 527
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
K+R+ M++ + K PGCS IE+DGV+ EF G++++ ++EI LL I HLK+
Sbjct: 528 ALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKN 584
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/509 (39%), Positives = 303/509 (59%), Gaps = 25/509 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + QI + +G D F +I+ F + S G + + LF ++ FI NT+I
Sbjct: 48 LKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLI 107
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R +A PI A Y +M S + P+ +TF +L+AC++ L +G H+ V +LGW
Sbjct: 108 RAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGW 167
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S V N L+ +YA+C ++ A +FD + D SW +I GY K G AR+MF+
Sbjct: 168 SSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEA 227
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP+++ VSWS MINGYVQ FKE L F M PN + +V AL+ACA LGA++QG
Sbjct: 228 MPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG 287
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WI Y++R + L + LGTA+IDMY+KCG +E A VF M ++V A++++I+GLA +
Sbjct: 288 QWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAIN 347
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
Q A+ LF +M+++GV PNE SM+ IYG++P H
Sbjct: 348 GQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHH 407
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+ C+VDL GRAGML+ A+ V++ MP +P++ + GALLNACR+HGD +LG++ + L+E
Sbjct: 408 HCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELD 467
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+H G +VLLSNIYA+ +W+ V ++RR M + +V K PGCS I++ + EFV+G+ ++
Sbjct: 468 PNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSH 527
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+E I L + + LK+ + D +V
Sbjct: 528 PQLEMIYAKLGEMSQELKAAGYKPDTGQV 556
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/508 (38%), Positives = 306/508 (60%), Gaps = 24/508 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++KQ S + G D A+G++I FC+ S GDL++ +F + + +I+NT+
Sbjct: 33 MAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIF 92
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+ +Y +ML PN +T+ ++RAC + G HA V++ G+
Sbjct: 93 RGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 152
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ F LN L+H+Y ++ AR++FD RDV+SWTSLI GY++ G + AR++F+ M
Sbjct: 153 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELM 212
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N+VSW+AMI YVQ + EA F+ M+L + L+AC LGAL+QG+
Sbjct: 213 PERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGK 272
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y++++GIELD L T +IDMY KCGC+E A VF+ +P + + ++ +I GLA H
Sbjct: 273 WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHG 332
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ +AIELF M+ E V P+ + M+E+ G++PG++H+
Sbjct: 333 KGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF 392
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG+LE A+K++ EMP+ PD VLGAL+ ACR+HG+ +LG++ + ++E
Sbjct: 393 GCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEP 452
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ G +VLL+N+YAS +W V KVR+ M D V+K PG S+IE + V EF++G R +
Sbjct: 453 HNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHP 512
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EI L I + ++S+ + D + V
Sbjct: 513 QAKEIYAKLDEILETIRSIGYVPDTDGV 540
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/485 (40%), Positives = 298/485 (61%), Gaps = 25/485 (5%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMI 60
+++KQI + + +G + D +A+ K + FC +S D L + +F TF+WN MI
Sbjct: 28 EELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RGF+ +EP ++ LY++ML S N YTF +L+AC++ S HAQ+ +LG+E
Sbjct: 88 RGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYE 147
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ + +N L++ YA A LFD D +SW S+I GY K+G++ IA +F KM
Sbjct: 148 NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKM 207
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
EKNA+SW+ MI+GYVQ D+ KEAL+ F+ MQ P++ + AL+ACA LGAL+QG+
Sbjct: 208 AEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 267
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH+Y+++ I +D +LG +IDMYAKCG +E A VF ++ + V A+T+LISG A H
Sbjct: 268 WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHG 327
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
AI FM MQ G+ PN SM Y ++P ++HY
Sbjct: 328 HGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHY 387
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG+L+ AK+ ++EMP++P+ + GALL ACR+H +++LG+E E L+
Sbjct: 388 GCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 447
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
H G +V +NI+A ++W+ + RR M++ V KVPGCS I ++G EF++G+R++
Sbjct: 448 YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHP 507
Query: 457 LMEEI 461
+E+I
Sbjct: 508 EIEKI 512
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/525 (36%), Positives = 310/525 (59%), Gaps = 41/525 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M +KQI S +G + +P KI+ FC + + GD+ + +LF + + F WN M
Sbjct: 27 MYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMF 86
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G++ P +LY +ML + P+ YT+ F+ + + L +G H V++ G +
Sbjct: 87 KGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLD 146
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMS-----------------VNRDVISWTSLING 163
S F N L+++Y+ C +D AR +FDMS + +DVISWT+++ G
Sbjct: 147 SNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTG 206
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
+ +GQ+ AR+ F KMPE++ VSW+AMI+GY++++ +KEAL F MQ +P+ +
Sbjct: 207 FVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTM 266
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
V LTACA LGAL+ G WI Y+D+N ++ D +G A+IDMY KCG +E A S+F+++P
Sbjct: 267 VSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQ 326
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------------------- 321
RD F +T+++ GLA + A+ +F +M V P+E
Sbjct: 327 RDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKF 386
Query: 322 --SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
SM+ +GIEP + HYGC+VDLLG+AG L+ A ++++ MP++P++ V GALL ACR+H
Sbjct: 387 FASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHK 446
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
D ++ + +E ++E ++ V+VL NIYA+ +W+ + ++R+ M D ++K PGCSLI
Sbjct: 447 DAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLI 506
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E++G+V EFV+G++++ +EI L + LK + + +EV
Sbjct: 507 EMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEV 551
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 285/478 (59%), Gaps = 26/478 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSA-SDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ ++ Q +H+ SG + FA ++I S S + + + +F + +++WNT+
Sbjct: 20 ISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTI 79
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR +A P A ++ QML + LP+ YTF+F L++C S + G H V++ G
Sbjct: 80 IRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGL 139
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA-RQMFD 178
F+ N L+HLYA+C C++ AR L D + RDV+SW +L++ YA+ G + +A R++F
Sbjct: 140 GDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFG 199
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+ P KN VSW+AMI GY F E L F MQ G +P++ +V L+ACA +GAL Q
Sbjct: 200 ETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQ 259
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G W+HAY+D+NGI +D + TA++DMY+KCG IE A VF+S +D+ + S+ISGL+
Sbjct: 260 GEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLST 319
Query: 299 HDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQ 334
H A+++F M +EG PNE M ++GI+P ++
Sbjct: 320 HGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIE 379
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGR G+LE A+++V++MP + + V +LL ACR HG+V+L + + L+E
Sbjct: 380 HYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLEL 439
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
S V LSN+YAS +W V +VR+ M VRK PGCS+IEVDG V EF++GE
Sbjct: 440 SPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 497
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/485 (39%), Positives = 294/485 (60%), Gaps = 26/485 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +K I +HL + T++D FA +I ++ L + ++F +Q FI+N+ I
Sbjct: 28 LSHLKIIHAHLIRAHTIFDVFAASCLISISINKNL--LDYAAQVFYQIQNPNLFIYNSFI 85
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RGF+ +P K+F Y Q R+ +P+N T+ F+++AC L +G+ H Q+IR G++
Sbjct: 86 RGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFD 145
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V N L+ +Y+T + A +F DV+SWTS++ GY KSG ++ AR++FDKM
Sbjct: 146 SDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKM 205
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEKN V+WS MI+GY + F +A+E + +Q G N +V + +CA LGAL+ G
Sbjct: 206 PEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGE 265
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
H Y+ RN + +++ILGTA++DMYA+CG I+ A VFD +P RD ++T+LI+G A H
Sbjct: 266 RAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHG 325
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+E F RM+ G+ P ESM Y IEP ++HY
Sbjct: 326 YAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHY 385
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG L A+K V EMP++P+ + GALL ACR+H + ++ + ++L+E
Sbjct: 386 GCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKP 445
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+H G +VLLSNIYA T +W VE +R+ M++ V K PG +L E+DG V +F G++T+
Sbjct: 446 EHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHP 505
Query: 457 LMEEI 461
+++I
Sbjct: 506 EIQQI 510
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/513 (39%), Positives = 299/513 (58%), Gaps = 30/513 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MKQ+KQIQ+ + + + +P K + C++ +GDL + R+F + TF+WN +I
Sbjct: 1 MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R ++ +EP AF Y+QML S N+YTF F+LRAC + + L H VI+LG+
Sbjct: 61 RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F LN LLH+YA C + AR+LFD RD +SW +I+GY KSG + A +F M
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P KN VSW+++I+G V+ EAL MQ GF + I LTACA LGALDQGR
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLAN 298
W+H YV NG+++D ++G A+++MY KCG +E A SVF + +DV+ +T++I G A
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + A+E F RM+ EG+ PN +SM Y + P ++
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIE 360
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGR+G L+ AK+++++MP++P + GALL AC +H D LG + LVE
Sbjct: 361 HYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEV 420
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
DH G ++ L+ I A+ +W +VR M+ V PG S + ++G+V EF++G +
Sbjct: 421 DSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQD 480
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
+ ME+I L L I + L+ D+G E AT+
Sbjct: 481 HPQMEQIQLKLKQIAERLRQ----DEGYEPATK 509
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/512 (39%), Positives = 306/512 (59%), Gaps = 28/512 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M QIKQ +HL +G + P K++ AS G LS+ ++LF + FI+NTMI
Sbjct: 28 MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 87
Query: 61 RGFAE-KNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+ A + ++ M+R S FLPN YTF F+ +AC + + G I++G
Sbjct: 88 KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIG 147
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
ES FV N ++ +YA +D AR++FD S+++D+ SW +I GY SG+I A++MFD
Sbjct: 148 LESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFD 207
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M E++ VSW+ +I GYVQV FKEAL+ F+ M G PN + AL ACA L ALDQ
Sbjct: 208 EMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQ 267
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF--DSMPNRDVFAYTSLISGL 296
GRWIH Y+D++ I+++ L +++DMYAKCG I+ A VF + V+ + ++I G
Sbjct: 268 GRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGY 327
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
A H +S AI+LF +M++E V PN +SM+ YGIEP
Sbjct: 328 AMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE 387
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLLGR+G+L+ A++ V MP+ PD + GALL ACR+H D++ G+ + +
Sbjct: 388 IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIK 447
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E DH G HVLL+N+Y+++ QW+ + VR+ +E + +K PGCS IE++GV +F+ G+
Sbjct: 448 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGD 507
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
R++ +++ L L + LK+ + + EV
Sbjct: 508 RSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEV 539
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/484 (39%), Positives = 289/484 (59%), Gaps = 24/484 (4%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +K I +H+ + +D FA ++I FC S L + R+ +Q FI+N +IR
Sbjct: 31 RDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIR 90
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G + P +F Y + LR LP+N T F+++ACA +G+ H Q I+ G+E
Sbjct: 91 GCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQ 150
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+V N L+H+YA+ ++ AR +F DV+SWT +I GY + G AR++FD+MP
Sbjct: 151 DFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMP 210
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E+N V+WS MI+GY + + F++A+E F +Q G N +VG +++CA LGAL G
Sbjct: 211 ERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEK 270
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H YV RN + L++ILGTA++DMYA+CG +E A VF+ +P +DV +T+LI+GLA H
Sbjct: 271 AHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGY 330
Query: 302 SASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYG 337
+ A+ F M +G VP ESM +G+EP ++HYG
Sbjct: 331 AEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYG 390
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLLGRAG L A+K V +MP++P+ + ALL ACR+H +V++G+ + L+E +
Sbjct: 391 CMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPE 450
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ G +VLLSNIYA +W V +R+ M+D VRK PG SLIE+DG V EF G++T+
Sbjct: 451 YSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPE 510
Query: 458 MEEI 461
+E+I
Sbjct: 511 IEKI 514
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/514 (40%), Positives = 300/514 (58%), Gaps = 32/514 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT---TFIWN 57
MKQ K+ + L ++G P ++ II F + GD+ Y L + L+ T F++N
Sbjct: 1 MKQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDID--YALLLLLRTSTPPTVFLFN 58
Query: 58 TMIRGFAEKNEP---IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
T IRGF+ P + + L+ +M PNN+TF+F+ + C++ +G H V
Sbjct: 59 TTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMV 118
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
I+ +E FV N ++ Y+ C ++ AR +FD S DV+SW S+I+G ++G I A
Sbjct: 119 IKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEAL 178
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+F KM E+N +SW+ MI+GY Q KEAL F MQ+ PN A +V L+AC+ LG
Sbjct: 179 SLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLG 238
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
ALD G W+H Y+ + + +D IL A+IDMYAKCG I+ A F + RDV AYT+ IS
Sbjct: 239 ALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAIS 298
Query: 295 GLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIE 330
GLA + S A++LF +M+ EG+ P+ SMS+++GI
Sbjct: 299 GLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIR 358
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P + HY C+VDLLGRAG+LE A+K V MPI+PDN + GALL ACRV+G+ ++G+
Sbjct: 359 PELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSL 418
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
LVE +H+G ++LLSNIYA + + E+VR+ M +V +VPGCSLIEV G V EF S
Sbjct: 419 LVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFS 478
Query: 451 GERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
G+R++ EEI L+ I K +K + ++ V
Sbjct: 479 GDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAV 512
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/485 (39%), Positives = 294/485 (60%), Gaps = 25/485 (5%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMI 60
+++KQI + + +G + D +A+ K + C +S D L + +F TF+WN MI
Sbjct: 57 EELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 116
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RGF+ +EP ++ LY++ML N YTF +L+AC++ S L HAQ+ +LG+E
Sbjct: 117 RGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYE 176
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ + +N L++ YA A LFD D +SW S+I GYAK+G++ IA +F KM
Sbjct: 177 NDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKM 236
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
EKNA+SW+ MI+GYVQ + KEAL+ F+ MQ P++ + AL+ACA LGAL+QG+
Sbjct: 237 VEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 296
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH+Y+ + I +D +LG +IDMYAKCG + A VF ++ + V A+T+LISG A H
Sbjct: 297 WIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHG 356
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
AI FM MQ G+ PN +M Y ++P ++HY
Sbjct: 357 HGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHY 416
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLL RAG+L+ AK+ ++EMP++P+ + GALL ACR+H +++LG+E E L+
Sbjct: 417 GCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 476
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
H G +V +NI+A ++W+ + RR M++ V KVPGCS I ++G EF++G+R++
Sbjct: 477 YHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHP 536
Query: 457 LMEEI 461
+E+I
Sbjct: 537 EIEKI 541
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/518 (39%), Positives = 306/518 (59%), Gaps = 31/518 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+KQ +I S + ++G + D FA +++ F + S L + ++F ++ F+WNTM+
Sbjct: 42 LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMM 101
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + + N KA LYK M++++ P+NYT+ +++ACA F G H V+++G++
Sbjct: 102 RAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFD 161
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG---QISIARQMF 177
S +V N L+++YA C M ARKLFD S D +SW S++ GY K G Q+ A ++F
Sbjct: 162 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLF 221
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
++M EK+ VSWSA+I+GY Q +++EAL F M G R + +V L+ACA L +
Sbjct: 222 NEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVK 281
Query: 238 QGRWIHAYVDRNGIELDIILGTAII----DMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G+ IH V R GIE + L A+I DMY KCGC+E A VF+ M + V ++ +LI
Sbjct: 282 TGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALI 341
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
GLA + ++++F M+ GV+PNE SM E +GI
Sbjct: 342 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI 401
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EP V+HYGC+VDLLGRAG+L A+K++ MP+ PD GALL AC+ HGD ++G+
Sbjct: 402 EPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGR 461
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L+E DH+G HVLLSNI+AS W V +VR M+ V K PGCSLIE +GVV EF+
Sbjct: 462 KLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFL 521
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
+G++T+ + ++ +L + K LK + D NEV+ +
Sbjct: 522 AGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLD 559
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/487 (38%), Positives = 293/487 (60%), Gaps = 26/487 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFC--SASDIGDLSHGYRLFVCLQYRTTFIWNT 58
+ +K I +++ + + D FA ++I FC +S + + R+F +Q FI+N
Sbjct: 30 LTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNA 89
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
MIRG + P +AF Y Q R LP+N TF F++++C C+ +G H +I+ G
Sbjct: 90 MIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHG 149
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+E +V N L+H+YAT + A +F DV+SWTS+I G+ K G + AR++FD
Sbjct: 150 FEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFD 209
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MPEKN V+WS MI+GY Q + F +A+E F +Q G R N +V +++CA LGAL+
Sbjct: 210 QMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALEL 269
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G H YV +NG+ L++ILGTA++DMYA+CG I+ A VF+ +P RD ++T+LI+GLA
Sbjct: 270 GERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAM 329
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H S +++ F M G+ P ESM + +EP ++
Sbjct: 330 HGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLE 389
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGRAG LE A++ V +MP++P+ V GALL ACR+H + ++G+ + L++
Sbjct: 390 HYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQL 449
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
H G +VLLSNIYA+ ++W V ++R+ M+ ++K PG SLIE+DG V +F G+ +
Sbjct: 450 LPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSS 509
Query: 455 NVLMEEI 461
+ M++I
Sbjct: 510 HPEMDKI 516
>gi|115450020|ref|NP_001048611.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|48716334|dbj|BAD22946.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
Japonica Group]
gi|113538142|dbj|BAF10525.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|125584254|gb|EAZ25185.1| hypothetical protein OsJ_08985 [Oryza sativa Japonica Group]
Length = 500
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/444 (44%), Positives = 277/444 (62%), Gaps = 42/444 (9%)
Query: 54 FIWNTMIRGF---AEKNEPIKAFALYKQMLR----SDFLPNNYTFSFILRACADTSCL-- 104
F N+++R + + P++A L+ ++ R + F PN YTFSF+L A A + L
Sbjct: 39 FFPNSLLRSLLPPSHSHSPLRALRLFPRLRRIIATNPFFPNAYTFSFLLTASASLAPLPH 98
Query: 105 -----FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN-RDVISWT 158
+ HA I + +++ +V NGL+H YA+C + AR++FD++V+ RDV SWT
Sbjct: 99 AASPRVLVESLHALAILVACDAHAYVSNGLIHAYASCALLCSARRVFDVNVSCRDVCSWT 158
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
SL+ Y ++ ++ AR +FD MP K ++W+A+++ YV F EA++ F M RP
Sbjct: 159 SLLTAYGRAARLHHARALFDAMPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRP 218
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYV--DRNGIELDIILGTAIIDMYAKCGCIETACS 276
N A I+ L AC LGAL+QGRW+HA++ + D ++ TA++DMYAKCG +ETA
Sbjct: 219 NRAVILSVLAACGALGALEQGRWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQ 278
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------- 321
VF M RDVFAYT+++SGL++H + AIELF RMQ EGV PNE
Sbjct: 279 VFSGMAERDVFAYTAMVSGLSDHGRCVEAIELFGRMQEEGVRPNEVTFICVLSACGRAGL 338
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
SMS ++G+E GV+HYG +VD+LGRAGM+E A +VVR MP+ PD+YVLGALL
Sbjct: 339 VGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEALEVVRRMPMRPDSYVLGALL 398
Query: 373 NACRVHGDVDLGKETVESLVERSL-DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
NAC GD + G+E + E L D GV V LSN+YA +W V VRRGME+ +V
Sbjct: 399 NACVARGDTEGGEEVAAMMAELGLDDRSGVQVQLSNLYAGRGKWEEVVGVRRGMEERKVV 458
Query: 432 KVPGCSLIEVDGVVCEFVSGERTN 455
KVPGCS++EVDGV EFV+G+R++
Sbjct: 459 KVPGCSMVEVDGVAREFVAGDRSH 482
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 35/262 (13%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L H LF + ++TT W ++ + +A ++++MLR+ PN +L A
Sbjct: 170 LHHARALFDAMPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAA 229
Query: 98 CADTSCLFVGLICHAQVIRL-GWESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C L G HA ++ G + D V L+ +YA C ++ AR++F RDV
Sbjct: 230 CGALGALEQGRWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQVFSGMAERDVF 289
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
++T++++G + G+ EA+E F MQ G
Sbjct: 290 AYTAMVSGLSDHGRCV-------------------------------EAIELFGRMQEEG 318
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETA 274
RPN + L+AC G + + R I + +G+E + +++D+ + G +E A
Sbjct: 319 VRPNEVTFICVLSACGRAGLVGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEA 378
Query: 275 CSVFDSMPNR-DVFAYTSLISG 295
V MP R D + +L++
Sbjct: 379 LEVVRRMPMRPDSYVLGALLNA 400
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 286/477 (59%), Gaps = 24/477 (5%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G + ++LF + + W+ +I G+ + +A ++ +M + + +
Sbjct: 251 MGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSV 310
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L ACA S + G + H VIR+G ESY + N L+H+Y+ + A+KLF+ S N D
Sbjct: 311 LSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQ 370
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
ISW S+I+G K G + AR +FD MPEK+ VSWSA+I+GY Q D F E L F+ MQL
Sbjct: 371 ISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLG 430
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
RP+ +V ++AC L ALDQG+W+HAY+ +NG+++++ILGT ++DMY KCGC+E A
Sbjct: 431 QIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENA 490
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
VF+ M + V ++ +LI GLA + ++++F M+ GV+PNE
Sbjct: 491 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 550
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM E +GIEP V+HYGC+VDLLGRAG+L A+K++ MP+ PD GA
Sbjct: 551 GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGA 610
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL AC+ HGD ++G+ L+E DH+G HVLLSNI+AS W V +VR M+ V
Sbjct: 611 LLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGV 670
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
K PGCSLIE +GVV EF++G++T+ + ++ +L + K LK + D NEV+ +
Sbjct: 671 VKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLD 727
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 199/385 (51%), Gaps = 62/385 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+KQ +I S + ++G + D FA +++ F + S L + ++F ++ F+WNTM+
Sbjct: 54 LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMM 113
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + + N KA LYK M++++ P+NYT+ +++ACA F G H V+++G++
Sbjct: 114 RAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFD 173
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V N L+++YA C M ARKLFD S D +SW S++ GY K G + A+ +FD+M
Sbjct: 174 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM 233
Query: 181 P-------------------------------EKNAVSWSAMINGYVQVDLFKEALEHFN 209
P EK+ VSWSA+I+GY Q +++EAL F
Sbjct: 234 PQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 293
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA--- 266
M G R + +V L+ACA L + G+ IH V R GIE + L A+I MY+
Sbjct: 294 EMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSG 353
Query: 267 ----------------------------KCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
KCG +E A ++FD MP +D+ +++++ISG A
Sbjct: 354 EIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQ 413
Query: 299 HDQSASAIELFMRMQLEGVVPNESM 323
HD + + LF MQL + P+E++
Sbjct: 414 HDCFSETLALFHEMQLGQIRPDETI 438
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 17/205 (8%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
Q+FD++ N W+ M+ Y+Q + ++AL + M P++ + ACA
Sbjct: 96 QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRL 155
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
G+ IH +V + G + D+ + +I+MYA CG + A +FD P D ++ S+++
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 215
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
G A +F +M +V + SM + LLG+ G + A K
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQRNIVASNSM----------------IVLLGKMGQVMEAWK 259
Query: 355 VVREMPIEPDNYVLGALLNACRVHG 379
+ EM E D AL++ +G
Sbjct: 260 LFNEMD-EKDMVSWSALISGYEQNG 283
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/508 (37%), Positives = 285/508 (56%), Gaps = 56/508 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSA-SDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ ++ Q +H+ SG + FA ++I S S + + + +F + +++WNT+
Sbjct: 20 ISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTI 79
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR +A P A ++ QML + LP+ YTF+F L++C S + G H V++ G
Sbjct: 80 IRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGL 139
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
F+ N L+HLYA+C C++ AR L D + RDV+SW +L++ YA+ G + +A +FD+
Sbjct: 140 GDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDE 199
Query: 180 M-------------------------------PEKNAVSWSAMINGYVQVDLFKEALEHF 208
M P KN VSW+AMI GY F E L F
Sbjct: 200 MTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLF 259
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
MQ G +P++ +V L+ACA +GAL QG W+HAY+D+NGI +D + TA++DMY+KC
Sbjct: 260 EDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKC 319
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------ 322
G IE A VF+S +D+ + S+ISGL+ H A+++F M +EG PNE
Sbjct: 320 GSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVL 379
Query: 323 ------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
M ++GI+P ++HYGC+VDLLGR G+LE A+++V++MP +
Sbjct: 380 SACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEA 439
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ V +LL ACR HG+V+L + + L+E S V LSN+YAS +W V +VR+
Sbjct: 440 SVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQK 499
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
M VRK PGCS+IEVDG V EF++GE
Sbjct: 500 MRAQGVRKDPGCSMIEVDGTVYEFLAGE 527
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/491 (38%), Positives = 288/491 (58%), Gaps = 28/491 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DPF+ KI+ FC+ D G L + +F + TTF N++IRG+ KN P +A Y+
Sbjct: 9 DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M+ P+ +TF + ++C C L CH+ +LG+ S ++ N L+++Y+ C C
Sbjct: 69 MMLQGLDPDRFTFPSLFKSCG-VLCEGKQLHCHS--TKLGFASDAYIQNTLMNMYSNCGC 125
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMINGYVQ 197
+ ARK+FD VN+ V+SW ++I YA+ A ++F +M N W+ MING+V+
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
++EAL FN MQL G + + + L AC LGAL+ G+W+H Y+++ IE+D+ L
Sbjct: 186 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVAL 245
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
GTA++DMYAKCG IE+A VF MP +DV +T+LI GLA Q A+ELF MQ+ V
Sbjct: 246 GTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEV 305
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
P+ SM YGI+P ++HYGC+VD+LGRAG + A+
Sbjct: 306 KPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAE 365
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+++ MP+ PD +VL LL+ACR+HG++ + + + L+E + G +VLLSNIY+S +
Sbjct: 366 DLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMK 425
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
W +K+R M + ++K PGCS IEV GVV EFV G+ ++ EI L + + LK
Sbjct: 426 NWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLK 485
Query: 474 SLCFFDDGNEV 484
S + D +EV
Sbjct: 486 SAGYVPDKSEV 496
>gi|125541717|gb|EAY88112.1| hypothetical protein OsI_09550 [Oryza sativa Indica Group]
Length = 500
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/444 (43%), Positives = 275/444 (61%), Gaps = 42/444 (9%)
Query: 54 FIWNTMIRGF---AEKNEPIKAFALYKQMLR----SDFLPNNYTFSFILRACADTSCL-- 104
F N+++R + + P++A L+ ++ R + F PN YTFSF+L A A + L
Sbjct: 39 FFPNSLLRSLLPPSHSHSPLRALRLFPRLRRIIATNPFFPNAYTFSFLLTASASLAPLPH 98
Query: 105 -----FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN-RDVISWT 158
+ HA I + +++ +V NGL+H YA+ + AR++FD++V+ RDV SWT
Sbjct: 99 AASPRVLVESLHALAILVACDAHAYVSNGLIHAYASSALLCSARRVFDVNVSCRDVCSWT 158
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
SL+ Y ++ + AR +FD MP K ++W+A+++ YV F EA++ F M RP
Sbjct: 159 SLLTAYGRAALLHHARALFDAMPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRP 218
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYV--DRNGIELDIILGTAIIDMYAKCGCIETACS 276
N A I+ L AC LGAL+QGRW+HA++ + D ++ TA++DMYAKCG +ETA
Sbjct: 219 NRAVILSVLAACGALGALEQGRWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQ 278
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------- 321
VF M RDVFAYT+++SGL++H + AIELF RMQ EGV PNE
Sbjct: 279 VFSGMAERDVFAYTAMVSGLSDHGRCVEAIELFGRMQEEGVRPNEVTFICVLSACGRAGL 338
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
SMS ++G+E GV+HYG +VD+LGRAGM+E A +VVR MP+ PD+YVLGALL
Sbjct: 339 VGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEALEVVRRMPMRPDSYVLGALL 398
Query: 373 NACRVHGDVDLGKETVESLVERSL-DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
NAC GD + G+E + E L D GV V LSN+YA +W V VRRGME+ +V
Sbjct: 399 NACVARGDTEGGEEVAAMMAELGLDDRSGVQVQLSNLYAGRGKWEEVVGVRRGMEERKVV 458
Query: 432 KVPGCSLIEVDGVVCEFVSGERTN 455
KVPGCS++EVDGV EFV+G+R++
Sbjct: 459 KVPGCSMVEVDGVAREFVAGDRSH 482
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 35/262 (13%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L H LF + ++TT W ++ + +A ++++MLR+ PN +L A
Sbjct: 170 LHHARALFDAMPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAA 229
Query: 98 CADTSCLFVGLICHAQVIRL-GWESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C L G HA ++ G + D V L+ +YA C ++ AR++F RDV
Sbjct: 230 CGALGALEQGRWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQVFSGMAERDVF 289
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
++T++++G + G+ EA+E F MQ G
Sbjct: 290 AYTAMVSGLSDHGRCV-------------------------------EAIELFGRMQEEG 318
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETA 274
RPN + L+AC G + + R I + +G+E + +++D+ + G +E A
Sbjct: 319 VRPNEVTFICVLSACGRAGLVGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEA 378
Query: 275 CSVFDSMPNR-DVFAYTSLISG 295
V MP R D + +L++
Sbjct: 379 LEVVRRMPMRPDSYVLGALLNA 400
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 367 bits (942), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 198/514 (38%), Positives = 299/514 (58%), Gaps = 33/514 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTM 59
M Q++Q S + G + +I FC+ + D L++ +LF + F++NT+
Sbjct: 35 MSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTI 94
Query: 60 IRGFAEKNE-PIKA-FALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
I+GF P + LY ML++ LPNN+TF +L AC G+ HA + +
Sbjct: 95 IKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIHAHLFKF 151
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+ ++ LN L+H+Y T ++ AR++F + D +SWTSLI+GY+K G I A +F
Sbjct: 152 GFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIF 211
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA-LTACAFLGAL 236
MP+KN+ SW+AM+ YVQ + F EA F+ M+ + L+AC LGAL
Sbjct: 212 QLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGAL 271
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLIS 294
DQG+WIH Y+ RNGIELD L TAI+DMY KCGC+E A VF S+P R + ++ +I
Sbjct: 272 DQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIG 331
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIE 330
GLA H +AI+LF M+ + V P++ M +YGIE
Sbjct: 332 GLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIE 391
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P ++H+GC+VDLLGRAGM+ A+K++ EMP+ PD VLG LL AC+ H +++LG+E
Sbjct: 392 PRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRR 451
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
++E ++ G +VLL+N+YA+ +W KVR+ M+D V+K PG S+IE+ G V EF++
Sbjct: 452 VIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIA 511
Query: 451 GERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
GER + +E+ ++ + +HLKS+ + D N V
Sbjct: 512 GERNHPQAKELHAKVYEMLEHLKSVGYVADTNGV 545
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/526 (35%), Positives = 309/526 (58%), Gaps = 40/526 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +KQ+ + + + + DP A +++ F + SD DL + ++F + F +NT+I
Sbjct: 24 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 83
Query: 61 RGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R +E N+P A ++ +M+ PN +TF + +AC L G H ++ G
Sbjct: 84 RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 143
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLF---------------DMSVNRDVISWTSLINGY 164
+S +FV++ ++ +Y +C M+ A +LF V+ DV+ W +I+GY
Sbjct: 144 DSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGY 203
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
+ G++ +AR +FD+MP+++ VSW+ MI GY Q FKEA+E F MQ+ PN+ +V
Sbjct: 204 VRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLV 263
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L A + LGAL+ G+W+H Y RN I +D +LG+A+IDMYAKCG IE A VF+ +P R
Sbjct: 264 SVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKR 323
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ 320
+V ++++I+GLA H ++ ++ F M+ GV+P+
Sbjct: 324 NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFF 383
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
+ M + G+EP ++HYGC+VDLLGRAG+LE +++++ MPI+PD+ + ALL AC++HG+
Sbjct: 384 DHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGN 443
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
V++GK E L+E + G +V LSNIYAS W GV KVR M++ +VRK PGCS IE
Sbjct: 444 VEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIE 503
Query: 441 VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVAT 486
+DGV+ EF+ + ++ ++I +L + ++L + + + +V T
Sbjct: 504 LDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLT 549
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/485 (37%), Positives = 289/485 (59%), Gaps = 24/485 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK++ QI L GT+ + V ++ + ++ +L++ +F + T IWNTM+
Sbjct: 23 MKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTML 82
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R ++ N+P A LY QML + N+YTF F+L+AC+ S HA +I+ G+
Sbjct: 83 RAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFG 142
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ N LL +YA + A LF+ RD++SW +I+GY K G + +A ++F M
Sbjct: 143 LEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAM 202
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEKN +SW+ MI G+V++ + KEAL M + G +P+ + +L+ACA LGAL+QG+
Sbjct: 203 PEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGK 262
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y+++N I++D +LG + DMY KCG +E A VF + + V A+T++I GLA H
Sbjct: 263 WIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHG 322
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A++ F +MQ G+ PN ESMS +Y I+P ++HY
Sbjct: 323 KGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHY 382
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDL+GRAG+L+ A++ + MP++P+ + GALLNAC++H +LGKE + L+E
Sbjct: 383 GCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDP 442
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
DH G ++ L++IYA+ +WN V +VR ++ + PGCS I ++GVV EF +G+ ++
Sbjct: 443 DHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFAGDGSHP 502
Query: 457 LMEEI 461
++EI
Sbjct: 503 HIQEI 507
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 297/510 (58%), Gaps = 26/510 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++++KQI + L ++G L DP VG+ + + ++ +L + ++ Q T F +N+MI
Sbjct: 22 LRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMI 81
Query: 61 RGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
R ++ + P ++F Y ++L S P+NYTF+F++R A G H ++ G
Sbjct: 82 RAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYG 141
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+E V +GL+++YA +D ++F D++ T++++ AK G + AR++FD
Sbjct: 142 FEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFD 201
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
KM K+ ++W+AMI+GYVQ +EAL FN MQ G + N +V L+AC+ LGALDQ
Sbjct: 202 KMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQ 261
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GRW HAY++RN + + + LGTA+IDMYAKCG + A VF M ++V+ ++S I GLA
Sbjct: 262 GRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAM 321
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
+ +ELF M+ + V PN ESMS++YGIEP ++
Sbjct: 322 NGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLE 381
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDL GRAG L+ A + MP+ P GALLNAC+++ ++++G+ +VE
Sbjct: 382 HYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVEL 441
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +VLLSNIYA ++ W+ V VR+ M VRK PGCS+IEV G V EF G+++
Sbjct: 442 EAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKS 501
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ EI ++L I + LK + + N V
Sbjct: 502 HPRYAEIQVMLGEISRRLKLSGYVANTNPV 531
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 177/483 (36%), Positives = 288/483 (59%), Gaps = 24/483 (4%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQI L GT+ V +++ ++ + +L++ +F + T +WNTMIR
Sbjct: 26 ELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRA 85
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ N+P +A LY QML N YTF F+L+AC+ S L H Q+I+ G+ S
Sbjct: 86 YSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSE 145
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ N LL +YA + A LFD+ +RD++SW ++I+GY K G + +A ++F MPE
Sbjct: 146 VYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPE 205
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
KN +SW++MI G+V+ + KEAL M + G +P+ + +L+ACA LGAL+QG+WI
Sbjct: 206 KNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWI 265
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H Y+ +N I++D +LG A+IDMY KCG ++ A VF + + V+ +T++I G A H +
Sbjct: 266 HTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKG 325
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
+ A++ F +MQ G+ P ESMS Y ++P ++HYGC
Sbjct: 326 SEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGC 385
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG L+ AK+ V MPI+P+ + G+LLNAC +H ++LGKE + L+E +H
Sbjct: 386 MVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEH 445
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
+G ++ L++I+A+ +W+ +VR +++ + +PGCS I ++GV EF +G + +
Sbjct: 446 DGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAHEFFAGAEPHPHV 505
Query: 459 EEI 461
E+
Sbjct: 506 REM 508
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 191/511 (37%), Positives = 295/511 (57%), Gaps = 27/511 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K++KQI + L V G L +P G+ + + + +L + +L T F N+MI
Sbjct: 22 LKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNSMI 81
Query: 61 RGFAEKNEPIKAFALYKQMLRSD---FLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
R +++ + P K+F Y +L S+ P+NYTF+F++R CA GL H VI+
Sbjct: 82 RAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKH 141
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+E V GL+ +YA C+ +FD +V D+++ T+++N AK G I AR+MF
Sbjct: 142 GFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMF 201
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MPE++ V+W+AMI GY Q +EAL+ F+ MQ+ G + N +V L+AC L LD
Sbjct: 202 DEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLD 261
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
GRW+HAYV+R + + + LGTA++DMYAKCG ++ A VF M R+V+ ++S I GLA
Sbjct: 262 HGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLA 321
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
+ +++LF M+ EGV PN +SM +YGI P +
Sbjct: 322 MNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQL 381
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYG +VD+ GRAG L+ A + MP+ P ALL+ACR++ + +LG+ +VE
Sbjct: 382 EHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVE 441
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
++G +VLLSNIYA + W V +R+ M+ V+K+PGCS+IEVDG V EF+ G++
Sbjct: 442 LEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDK 501
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ +EI + L I K L+ + + N V
Sbjct: 502 SHPRYDEIEMKLEEISKCLRLSGYVANTNPV 532
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 185/483 (38%), Positives = 290/483 (60%), Gaps = 29/483 (6%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L++ +F LQ ++N++IR + P++A LY ML+S P++ T+ F+++A
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 175
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C ++S + GL+ H V++ G+E ++++ L+HLYA + A++LF++ RDV+SW
Sbjct: 176 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 235
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
++I+GY K ++ AR +FD+M ++ +SW+ MINGY EAL F+ M+ G +
Sbjct: 236 NAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVK 295
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P A +V L+ACA LGALD+G +H Y++ N IE++ I+GTA++DMYAKCG I A V
Sbjct: 296 PTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQV 355
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------- 320
F++M ++DV A+ ++I+G+A H A +LF M+ GV PN
Sbjct: 356 FNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMV 415
Query: 321 -------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
+ MS YGIEP V+HYGC++DLL RAG LE A +++ MP+EP+ LGALL
Sbjct: 416 DEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLG 475
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
CR+HG+ +LG+ + L+ H G ++LLSNIYA+ ++W+ KVR M+ N + KV
Sbjct: 476 GCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKV 535
Query: 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLD 493
PG S+IE+ G+V FV+G+ ++ +I L I LKS + A G LLD
Sbjct: 536 PGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYS-----ADTGNVLLD 590
Query: 494 CQK 496
++
Sbjct: 591 MEE 593
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/516 (36%), Positives = 302/516 (58%), Gaps = 43/516 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG--DLSHGYRLFVCLQYRTTFIWNT 58
++ + QI + SG + D A +I+ FC+ SD+ DL + +++F + R F WNT
Sbjct: 36 IRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 95
Query: 59 MIRGFAEKNE--PIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVI 115
+IRGF+E +E + A L+ +M+ +F+ PN +TF +L+ACA T + G H +
Sbjct: 96 IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLAL 155
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLF-------DMSVNRD-------VISWTSLI 161
+ G+ +FV++ L+ +Y C M AR LF DM V D ++ W +I
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMI 215
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
+GY + G AR +FDKM +++ VSW+ MI+GY FK+A+E F M+ RPN+
Sbjct: 216 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYV 275
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
+V L A + LG+L+ G W+H Y + +GI +D +LG+A+IDMY+KCG IE A VF+ +
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------------- 321
P +V ++++I+G A H Q+ AI+ F +M+ GV P++
Sbjct: 336 PRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGR 395
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
M + G+EP ++HYGC+VDLLGR+G+L+ A++ + MPI+PD+ + ALL ACR+
Sbjct: 396 RYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRM 455
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
G+V++GK L++ G +V LSN+YAS W+ V ++R M++ ++RK PGCS
Sbjct: 456 QGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCS 515
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
LI++DGV+ EFV + ++ +EI +L I L+
Sbjct: 516 LIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 188/500 (37%), Positives = 291/500 (58%), Gaps = 29/500 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MKQ+K+ + + G D FA+ +++ FCS G L H ++LF +Q+ T I NTMI
Sbjct: 18 MKQLKEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F K + I +Y QML + P+NYT ++L+ACA +G H Q ++LG+
Sbjct: 78 KAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFW 137
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N L+ +Y++ + AR +FD +SWT +I+GYAK G + AR +FD+
Sbjct: 138 FDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEA 197
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P K+ W ++I+GYVQ + FKE L+ F MQ G P+ A +V L ACA LGA++ G
Sbjct: 198 PMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGV 257
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H Y+D+ G L + L T +IDMYAKCG ++ A +FD M RD + ++ISG+A +
Sbjct: 258 WVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNG 317
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
+A+ LF M+ GV P++ SM +Y +EP +HY
Sbjct: 318 DGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHY 377
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP--IEPDNYVLG--ALLNACRVHGDVDLGKETVESLV 392
GC+VDLLGRAG+L+ AK+++ +MP P + ALL+AC HG ++ ++ + L
Sbjct: 378 GCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLF 437
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
H G +VLLSN+YA+ + + V ++R+ ME+ V K PGCS ++++GVV EF++GE
Sbjct: 438 HLE-HHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVVHEFIAGE 496
Query: 453 RTNVLMEEIVLLLFGIDKHL 472
T++ MEE+ +L ++K +
Sbjct: 497 ETHLQMEEVHRVLEKMNKQM 516
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/539 (36%), Positives = 298/539 (55%), Gaps = 55/539 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+ + +G D + G ++ + +L+ ++F + F++N +I
Sbjct: 43 LHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIII 102
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG-- 118
+G + NEP KA Y +M+ + PN +T+ + +AC G+ HA VI+ G
Sbjct: 103 KGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLS 162
Query: 119 ------------WESYDFV-----------------LNGLLHLYATCNCMDPARKLFDMS 149
+ S+ V N ++ Y C ++ A++LF
Sbjct: 163 GDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSM 222
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+++V SW +++G AK G I AR++F++M EKN +SWSAMI+GY++ +KEALE FN
Sbjct: 223 EDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFN 282
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
MQ RP + L ACA LGALDQGRWIHAYV+ N D +LGTA++DMYAKCG
Sbjct: 283 VMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCG 342
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------- 320
++ A VF+ M ++VF + ++I GL H ++ AIELF +MQ + PN
Sbjct: 343 RLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLS 402
Query: 321 ---------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
SM E+YGIEPG++HYGC+VDLLGRAG+L A++V+ MP+EP
Sbjct: 403 ACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSA 462
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
V GALL ACR HGDV+LG+ + L+E + G + LLSNIYA +W+ V VR+ M
Sbjct: 463 AVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLM 522
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ V+ G S+I+ DGVV EF G+ ++ M+ I L+L + K LK F + ++V
Sbjct: 523 KERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQV 581
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 181/490 (36%), Positives = 290/490 (59%), Gaps = 25/490 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK +++I +HL +G P AV ++ FC+ S GD+++ Y +F + F WNT+I
Sbjct: 37 MKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTII 96
Query: 61 RGFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RGF++ + P A +L+ ML S P+ T+ + +A A G H +VI+LG
Sbjct: 97 RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGL 156
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ F+ N ++++YA C + K F ++ D+++W S+I G AK G++ +R++FD+
Sbjct: 157 QFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDE 216
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP +N VSW++MI+GYV+ +EAL+ F MQ +P+ +V L A A LGAL QG
Sbjct: 217 MPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQG 276
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
WIH Y+ +N EL++I+ +IIDMY KCG I A VF+ P + + ++ ++I GLA +
Sbjct: 277 EWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMN 336
Query: 300 DQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQH 335
AI+LF R++ + P++ MS+ Y IEP ++H
Sbjct: 337 GCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKH 396
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y C+VD LGRAG+LE A++++R MP+ PD + +LL+ACR HG+V+L K + +V+
Sbjct: 397 YSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLD 456
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ +VLLSNIYA+++Q+ + R M++ ++ K PGCSLIEV+G + EFV+G R +
Sbjct: 457 GNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRLH 516
Query: 456 VLMEEIVLLL 465
+E+ LL
Sbjct: 517 PQAQEVYSLL 526
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 178/492 (36%), Positives = 284/492 (57%), Gaps = 31/492 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++K+I +H+ F V K++ C+ + + LF + F++N MIR
Sbjct: 29 ELKKIHAHIVKFSLSQSSFLVTKMVDVCNHH--AETEYANLLFKRVADPNAFLYNAMIRA 86
Query: 63 FAEKNEPIKAFALYKQML-----RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
+ + A +YKQML + P+ +TF F++++CA C +G H V +
Sbjct: 87 YKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKF 146
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G +S V N L+ +Y C+ +D A K+F+ RD +SW +LI+G+ + GQ+ AR +F
Sbjct: 147 GQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIF 206
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
++M +K SW+A+++GY ++ + +ALE F MQ+ G P+ +V L ACA LGAL+
Sbjct: 207 EEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALE 266
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WIH Y D+ G +I + A+I+MYAKCG I+ +FD M RDV +++++I GLA
Sbjct: 267 LGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLA 326
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
NH ++ AIELF MQ + PN ESM Y IEPGV
Sbjct: 327 NHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGV 386
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLV+LLG +G L+ A +++++MP++PD+ + G+LL++CR H ++++ +E L+E
Sbjct: 387 EHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLE 446
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G +VLLSN+YA +W+GV ++R+ M ++K PGCS IEVD +V EF SG+
Sbjct: 447 LEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDD 506
Query: 454 TNVLMEEIVLLL 465
+ + I +L
Sbjct: 507 SKPFSKAIYRVL 518
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 187/488 (38%), Positives = 274/488 (56%), Gaps = 54/488 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQIQS + ++G + D FA ++I FC+ S+ DL + + + TF WN I
Sbjct: 63 ISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAI 122
Query: 61 RGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RGF + P +A LYK++L+ D P+NYT+ + +ACA S + +G V+ LG+
Sbjct: 123 RGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGF 182
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY--------------- 164
+S FV N ++HL +C +D ARK+FD S RD++SW S+INGY
Sbjct: 183 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLESARKLFDSMT 242
Query: 165 --------------AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
A+SG + +A ++FD+MP+K+ V W+AMI GYV + KEAL FN
Sbjct: 243 NKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNE 302
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
MQ P+ +V L+AC+ LGALD G WIH Y++++ + L++ LGTA+IDMYAKCG
Sbjct: 303 MQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGK 362
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------- 321
I A VF +P R+ +T++ISGLA H + AI F M V+P+E
Sbjct: 363 ITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSA 422
Query: 322 ---------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
MS + + P ++HY C+VDLLGRAG+LE A+++++ MPIE D
Sbjct: 423 CCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAV 482
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V GAL ACR+HG+V +G+ L++ G++VLL+N+Y E W K R+ M
Sbjct: 483 VWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMR 542
Query: 427 DNEVRKVP 434
V K P
Sbjct: 543 QRGVEKTP 550
>gi|357144065|ref|XP_003573157.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 503
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/438 (47%), Positives = 276/438 (63%), Gaps = 43/438 (9%)
Query: 54 FIWNTMIRGFAEKNEPIKAFA-LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL---- 108
F+ N ++R P++ F L + +L FLPNNYTFSF+L A A
Sbjct: 39 FLPNNLLRA---APSPLRLFPRLRRILLPHAFLPNNYTFSFLLTAAAALPADAAAAPRRL 95
Query: 109 IC--HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYA 165
+C HA GW+++ +V NGL+H YA+ + AR++FD S +RD SWTSL+ GYA
Sbjct: 96 VCTLHALAAVFGWDAHVYVANGLIHAYASHGLLRHARQVFDGSSRSRDACSWTSLLTGYA 155
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++G + AR +FD+MP + V+WSAM++ +V F +A+E F+ M RPN A +VG
Sbjct: 156 RAGSLHDARALFDEMPHRTPVAWSAMLSAHVGAGGFADAIEVFDEMLRARVRPNRAAVVG 215
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--N 283
AL AC LGAL+QGRW+HA V E+D ++ TA++DMY KCG ++ A VF MP +
Sbjct: 216 ALAACGALGALEQGRWLHALVA-GRREVDGVVATALVDMYGKCGSLDAARQVFAGMPERD 274
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQL-EGVVPNE--------------------- 321
RDVFAYT++IS L++H + AIE+F RMQ GV PNE
Sbjct: 275 RDVFAYTAMISALSDHGRCREAIEVFDRMQQGRGVRPNEVTFICLLSACARTGGLVGRAK 334
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
SMS +YG++PGV+HYG LVD+LGRAG+L A VVR MP+ PD+YVLGALLNAC V
Sbjct: 335 EMFRSMSAVYGMDPGVEHYGSLVDVLGRAGLLSEAVDVVRGMPMRPDSYVLGALLNACWV 394
Query: 378 HGDVD---LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVP 434
HG VD +GK+ VE L E LDH GVHV LSN+YA + +W V KVR ME+ +V KVP
Sbjct: 395 HGGVDGVEVGKQVVEWLAELGLDHSGVHVQLSNMYACSSKWEDVVKVRTAMEEKKVAKVP 454
Query: 435 GCSLIEVDGVVCEFVSGE 452
GCS++EVDGV EFV+G
Sbjct: 455 GCSMVEVDGVAHEFVAGS 472
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 40/267 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L LF + +RT W+ M+ A ++ +MLR+ PN L
Sbjct: 158 GSLHDARALFDEMPHRTPVAWSAMLSAHVGAGGFADAIEVFDEMLRARVRPNRAAVVGAL 217
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYD-FVLNGLLHLYATCNCMDPARKLFD--MSVNR 152
AC L G HA V G D V L+ +Y C +D AR++F +R
Sbjct: 218 AACGALGALEQGRWLHALVA--GRREVDGVVATALVDMYGKCGSLDAARQVFAGMPERDR 275
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV ++T++I+ + G+ A ++FD+M +
Sbjct: 276 DVFAYTAMISALSDHGRCREAIEVFDRMQQGR---------------------------- 307
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCG 269
G RPN + L+ACA G L GR + + G++ + +++D+ + G
Sbjct: 308 --GVRPNEVTFICLLSACARTGGL-VGRAKEMFRSMSAVYGMDPGVEHYGSLVDVLGRAG 364
Query: 270 CIETACSVFDSMPNR-DVFAYTSLISG 295
+ A V MP R D + +L++
Sbjct: 365 LLSEAVDVVRGMPMRPDSYVLGALLNA 391
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 191/509 (37%), Positives = 292/509 (57%), Gaps = 26/509 (5%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ H+ G + F +I S S G++S +F WN MI G+
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLS--GEVSVARGVFDRSSKGDVVTWNVMISGYN 196
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ ++ L+ +M R LP++ T +L AC+ L VG H V L E
Sbjct: 197 RSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRV 256
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N L+ +YA C MD A +FD +RDVISWT+++ G+ GQ+ +AR FDKMPE++
Sbjct: 257 LENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERD 316
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+AMI+GY+QV+ FKE L F MQ +P+ +V LTACA LGAL+ G WI A
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 376
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+D+N I++D +G A+IDMY CG +E A +F++MP+RD ++T++I GLA +
Sbjct: 377 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEE 436
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
A+++F +M + P+E M+ +GIEP V HYGC+V
Sbjct: 437 ALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMV 496
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ A +V++ MP++P++ V G+LL ACRVH D ++ + + ++E ++
Sbjct: 497 DLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGA 556
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
V+VLL NIYA+ +W + +VR+ M D ++K PGCSLIE++G V EFV+G++ + +E
Sbjct: 557 VYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKE 616
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
I L + LK + D +EV + G
Sbjct: 617 IYSKLDEMSVDLKFAGYSPDTSEVFLDIG 645
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 196/398 (49%), Gaps = 51/398 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI S +G + +P +II FC ++GD+ + +F + F+WN MI
Sbjct: 32 MAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMI 91
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G++ P A ++Y +ML +P+ YT+ F+L+ + + G H +++LG+
Sbjct: 92 KGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFS 151
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV N L+HLY+ + AR +FD S DV++W +I+GY +S Q
Sbjct: 152 SNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ----------- 200
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
F E+++ F+ M+ P+ +V L+AC+ L L+ G+
Sbjct: 201 --------------------FDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGK 240
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H YV IE +L A+IDMYA CG ++TA +FD+M +RDV ++T++++G N
Sbjct: 241 RVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLG 300
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
Q A F +M V + ++D + + + REM
Sbjct: 301 QVGLARNYFDKMPERDFVS----------------WTAMIDGYLQVNRFKEVLSLFREMQ 344
Query: 361 ---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
I+PD + + ++L AC G ++LG E +++ ++++
Sbjct: 345 AANIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKN 381
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 184/466 (39%), Positives = 279/466 (59%), Gaps = 24/466 (5%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
+LF + + W+ +I F + +A + M + + + L ACA+
Sbjct: 331 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 390
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
+ +G + H+ +++G ESY + N L+++Y+ C + ARKLFD + D+ISW S+I+
Sbjct: 391 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 450
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
GY K + A+ +FD MPEK+ VSWS+MI+GY Q DLF E L F MQ+ GF+P+
Sbjct: 451 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 510
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+V ++ACA L AL+QG+W+HAY+ RNG+ +++ILGT +IDMY KCGC+ETA VF M
Sbjct: 511 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMI 570
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+ + + +LI GLA + S++++F M+ V PNE
Sbjct: 571 EKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH 630
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM + I+P V+HYGC+VDLLGRAG L+ A++++ MP+ PD GALL AC+ H
Sbjct: 631 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 690
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
GD ++G+ L+E DH+G HVLLSNIYAS +W+ V ++R M + V K+PGCS+
Sbjct: 691 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 750
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
IE +GV+ EF++G++T+ M+ I +L + LK + D NEV
Sbjct: 751 IEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEV 796
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 157/324 (48%), Gaps = 62/324 (19%)
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + + N P AF LYK ML + +NYT+ +++AC+ + H V++LG++
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V N L++ ++ C+ M A ++F+ S D +SW S++ GY + G + A+ ++ +M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305
Query: 181 PE-------------------------------KNAVSWSAMINGYVQVDLFKEALEHFN 209
PE K+ V+WSA+I + Q ++++EA+ F
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M G + V AL+ACA L ++ G+ IH+ + G E I L A+I MY+KCG
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425
Query: 270 -------------------------------CIETACSVFDSMPNRDVFAYTSLISGLAN 298
++ A ++FDSMP +DV +++S+ISG A
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485
Query: 299 HDQSASAIELFMRMQLEGVVPNES 322
+D + LF MQ+ G P+E+
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDET 509
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 51/104 (49%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
+ AC+ + + + +H +V + G + D+ + +I+ ++ C + AC VF+ D
Sbjct: 220 IQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDS 279
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
++ S+++G A ++ +M ++ + SM ++G+
Sbjct: 280 VSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 323
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 185/510 (36%), Positives = 296/510 (58%), Gaps = 27/510 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K++KQI + L ++G L + +G+ + + + +L + ++ T F N+MI
Sbjct: 22 LKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMI 81
Query: 61 RGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
R +++ P K+F Y ++L+S+ P+NYTF+F++R CA ++C G H +I+ G
Sbjct: 82 RAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSACE-AGPAVHGALIKHG 140
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+E V +GL+ +YA +C+ ++F+ D++ T++++ AK G I AR +FD
Sbjct: 141 FEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFD 200
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
MP+++ VSW+AMI GY Q +EAL F MQ+ G + N ++ +TAC LGALDQ
Sbjct: 201 SMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQ 260
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+W HAY+++N I++ + LGTA++DMY KCG ++ A VF M ++V+ +++ I GLA
Sbjct: 261 GKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAM 320
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
+ +ELF M+ EG+ PNE SM +GIEP ++
Sbjct: 321 NGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLE 380
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDL GRAG LE A + MP++P GALLNACR++ +++LG+ L+E
Sbjct: 381 HYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEV 440
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +V LSNIYA T W+ V VR+ M+ + K+PGCS++EV+G V EF SG+++
Sbjct: 441 EGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKS 500
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ + I + I K LK + N V
Sbjct: 501 HPSYDVIETMWGEISKRLKLAGYVASTNSV 530
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 184/466 (39%), Positives = 279/466 (59%), Gaps = 24/466 (5%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
+LF + + W+ +I F + +A + M + + + L ACA+
Sbjct: 196 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 255
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
+ +G + H+ +++G ESY + N L+++Y+ C + ARKLFD + D+ISW S+I+
Sbjct: 256 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 315
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
GY K + A+ +FD MPEK+ VSWS+MI+GY Q DLF E L F MQ+ GF+P+
Sbjct: 316 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 375
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+V ++ACA L AL+QG+W+HAY+ RNG+ +++ILGT +IDMY KCGC+ETA VF M
Sbjct: 376 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMI 435
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+ + + +LI GLA + S++++F M+ V PNE
Sbjct: 436 EKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH 495
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM + I+P V+HYGC+VDLLGRAG L+ A++++ MP+ PD GALL AC+ H
Sbjct: 496 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 555
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
GD ++G+ L+E DH+G HVLLSNIYAS +W+ V ++R M + V K+PGCS+
Sbjct: 556 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 615
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
IE +GV+ EF++G++T+ M+ I +L + LK + D NEV
Sbjct: 616 IEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEV 661
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 184/374 (49%), Gaps = 62/374 (16%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ ++G + + +A ++I F + + + R+F ++ F+WN MIR + + N P
Sbjct: 1 MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130
AF LYK ML + +NYT+ +++AC+ + H V++LG++S +V N L+
Sbjct: 61 FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 120
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR---------------- 174
+ ++ C+ M A ++F+ S D +SW S++ GY + G + A+
Sbjct: 121 NCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNS 180
Query: 175 ---------------QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
++FD+M EK+ V+WSA+I + Q ++++EA+ F M G +
Sbjct: 181 MIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVD 240
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG---------- 269
V AL+ACA L ++ G+ IH+ + G E I L A+I MY+KCG
Sbjct: 241 EVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 300
Query: 270 ---------------------CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
++ A ++FDSMP +DV +++S+ISG A +D + L
Sbjct: 301 EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLAL 360
Query: 309 FMRMQLEGVVPNES 322
F MQ+ G P+E+
Sbjct: 361 FQEMQMSGFKPDET 374
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 10/167 (5%)
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG--- 225
I R++F+ + N W+ MI Y+Q + HF + N+ G
Sbjct: 27 HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNS-----PHFAFTLYKSMLSNYLGADNYTY 81
Query: 226 --ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
+ AC+ + + + +H +V + G + D+ + +I+ ++ C + AC VF+
Sbjct: 82 PLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSV 141
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
D ++ S+++G A ++ +M ++ + SM ++G+
Sbjct: 142 LDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 188
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 178/492 (36%), Positives = 283/492 (57%), Gaps = 31/492 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++K+I +H+ F V K++ C+ G+ + LF + F++N MIR
Sbjct: 29 ELKKIHAHIVKFSLSQSSFLVTKMVDVCN--HYGETEYANLLFKGVADPNAFLYNAMIRA 86
Query: 63 FAEKNEPIKAFALYKQML-----RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
+ + A +YKQML + P+ +TF F++++CA C +G H V +
Sbjct: 87 YKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKF 146
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G +S V N L+ +Y C+ +D A ++F+ RD +SW +LI+G+ + GQ+ AR +F
Sbjct: 147 GQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIF 206
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
++M +K SW+A+++GY ++ + +ALE F MQ+ G P+ +V L CA LGAL+
Sbjct: 207 EEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALE 266
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WIH Y D+ G +I + A+I+MYAKCG I+ +FD M RDV +++++I GLA
Sbjct: 267 LGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLA 326
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
NH ++ AIELF MQ + P+ ESM Y IEPGV
Sbjct: 327 NHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGV 386
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLV+LLG +G L+ A ++V++MP +PD+ + G+LL++CR HG++ + +E L+E
Sbjct: 387 EHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLE 446
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G +VLLSN+YA +W+GV ++R+ M ++K PGCS IEVD +V EF SG+
Sbjct: 447 LEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDD 506
Query: 454 TNVLMEEIVLLL 465
+ + I +L
Sbjct: 507 SKPFSKAICRVL 518
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 185/500 (37%), Positives = 284/500 (56%), Gaps = 33/500 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++K I +H+ F V K++ C ++ DL + LF ++ +++N MIR
Sbjct: 29 ELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTE--DLGYASLLFKQVKEPNGYLYNAMIRA 86
Query: 63 FAEKNEPIKAFALYKQMLR-------SDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
A YK+MLR + P+ +TF F++++C+ C +G HA +
Sbjct: 87 HTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLC 146
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G +S + N L+ +Y C + A K+FD V RD ISW S+I+G+ GQ+ A
Sbjct: 147 KFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGA 206
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD MP + VSW+AMI+GY ++ + +AL F MQ+ G P+ I+ L ACA LGA
Sbjct: 207 LFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGA 266
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ G+WIH Y DRNG+ + A+++MY+KCGCI A +FD M DV +++++I G
Sbjct: 267 LEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGG 326
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
LANH ++ AIELF RM+ + PN +SMS+ Y IEP
Sbjct: 327 LANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEP 386
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
V+HYGCLVD+LGRAG L A V+ +MP++PD+ + G+LL++CR H ++D+ +E L
Sbjct: 387 EVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHL 446
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
E D G +VLLSNIYA +W+GV ++R+ ++ ++K PG SLI+++ VV EFVS
Sbjct: 447 EELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDINNVVQEFVSW 506
Query: 452 ERTNVLMEEIVLLLFGIDKH 471
+ + +I LL + H
Sbjct: 507 DDSKPFSRDIFWLLELLTSH 526
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 183/484 (37%), Positives = 286/484 (59%), Gaps = 26/484 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQI + + SG L DP+A+ K + FC +S +H F TF+WN MIRG
Sbjct: 26 ELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDV-FFNGFDRPDTFLWNLMIRG 84
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ ++P ++ LY +ML N YTF F+L+AC++ S HA + + G+
Sbjct: 85 LSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHD 144
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ +N L++ YA A LFD D +SW S+I GY K+G++ +A +F KMPE
Sbjct: 145 IYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPE 204
Query: 183 KN-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
KN A+SW+ MI+GYVQ + KEAL+ F+ MQ P++ + AL+AC+ LGAL+QG+W
Sbjct: 205 KNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKW 264
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IH+Y ++ +D +L +IDMYAKCG +E A VF +M + V +T+LISG A H
Sbjct: 265 IHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGL 324
Query: 302 SASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYG 337
AI F+ MQ GV PN ++ Y ++P ++HYG
Sbjct: 325 GREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYG 384
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLLGRAG+L A + +++MP++P+ + G+LL AC++H +++LG++ E L+E +
Sbjct: 385 CMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSN 444
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
H G +V ++NI+A ++W+ + RR M + V KVPGCS I ++G EF++G+R++
Sbjct: 445 HGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAE 504
Query: 458 MEEI 461
++EI
Sbjct: 505 IQEI 508
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 172/439 (39%), Positives = 268/439 (61%), Gaps = 24/439 (5%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L + Y +F +Q F++N +IR F+ EP KAF Y QML+S P+N TF F+++A
Sbjct: 69 LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 128
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
+ C+ VG H+Q++R G+++ +V N L+H+YA C + A ++F RDV+SW
Sbjct: 129 STEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSW 188
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
TS++ GY K G + AR+MFD+MP +N +WS MINGY + + F++A++ F M+ G
Sbjct: 189 TSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVV 248
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
N +V +++CA LGAL+ G H YV ++ + +++ILGTA++DMY +CG IE A V
Sbjct: 249 ANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRV 308
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------- 320
F+ +P++D +++S+I GLA H + AI F +M G P
Sbjct: 309 FEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLV 368
Query: 321 -------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
E+M YGIEP ++HYGC+VD+LGRAG L A+ + +MP++P+ +LGALL
Sbjct: 369 DKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLG 428
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
AC+++ + ++ + L+E +H G +VLLSNIYA QW +E +R M++ V+K
Sbjct: 429 ACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKP 488
Query: 434 PGCSLIEVDGVVCEFVSGE 452
PG SLIE+DG + +F G+
Sbjct: 489 PGWSLIEIDGKINKFSMGD 507
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 108/258 (41%), Gaps = 35/258 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ G+C + D +F + +R F W+ MI G+A+ N KA L++ M R +
Sbjct: 192 VAGYCKCGMVED---AREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVV 248
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
N ++ +CA L G H V++ + L+ +Y C ++ A ++
Sbjct: 249 ANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRV 308
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F+ ++D +SW+S+I G A G +A+
Sbjct: 309 FEELPDKDSLSWSSIIKGLAVHGHA-------------------------------HKAI 337
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDM 264
+F+ M GF P + L+AC+ G +D+G I+ + R+ GIE + I+DM
Sbjct: 338 HYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDM 397
Query: 265 YAKCGCIETACSVFDSMP 282
+ G + A + MP
Sbjct: 398 LGRAGKLAEAENFILKMP 415
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 34/199 (17%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ R+F L + + W+++I+G A KA + QM+R F P + T + +L
Sbjct: 300 GEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVL 359
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ H ++ G E Y+ + D + +
Sbjct: 360 SACS-----------HGGLVDKGLEIYENMKR-------------------DYGIEPRLE 389
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+ +++ ++G+++ A KMP K + G ++ E E M L
Sbjct: 390 HYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNM-LIE 448
Query: 216 FRPNHAG---IVGALTACA 231
+P H+G ++ + ACA
Sbjct: 449 VKPEHSGYYVLLSNIYACA 467
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/529 (36%), Positives = 297/529 (56%), Gaps = 59/529 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +K+I + L ++G + D F K + + S ++ + + +FV + Y ++ W TMIR
Sbjct: 41 EDLKKIHAQLIITGQIKDTFIATKTVESYAVS-ARNIDYAFWVFVGINYPDSYSWTTMIR 99
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
GF E P KA Y M + N +TF F+L+A G I H +++++G+
Sbjct: 100 GFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGF-C 158
Query: 122 YD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING----------------- 163
YD F N L+H+Y C + A LFD N +V++W ++I G
Sbjct: 159 YDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEM 218
Query: 164 --------------YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
Y+K G + IAR +FD MPE++ VSW +MI+ YVQ EALE F
Sbjct: 219 PERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFK 278
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M L G + I L+ACA +GALD GRWIHAY+ R+ + D+ L TA++DMYAKCG
Sbjct: 279 EMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCG 338
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------- 321
CI+TA VF++MP +++ ++ +++SGLA H +A+ELF +M+ GV PN+
Sbjct: 339 CIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLS 398
Query: 322 ----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
M + + I P V+HYGC+VD+L R G++ AK+++R MP+EP+
Sbjct: 399 ACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNV 458
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
+ GALLNAC+VHG ++G++ V + + + G +VLLSNI+A+ QWN VEK R+ M
Sbjct: 459 VIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMM 518
Query: 426 EDNEV-RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+ V +K+PG S IE+D VV +F + +R + E+ ++ ++ HL+
Sbjct: 519 KQMGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLE 567
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 289/487 (59%), Gaps = 27/487 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK +++I + L +G D A +++ FC+ S GD+++ Y +F ++ F+WNT+I
Sbjct: 9 MKDLQKIHAQLIKTGLAKDTIAASRVLAFCT-SPAGDINYAYLVFTQIRNPNLFVWNTII 67
Query: 61 RGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
RGF++ + P A +L+ M+ + P T+ + +A A G H +VI+LG
Sbjct: 68 RGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLG 127
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
E+ F+ N +L++Y C + A+++FD + DV++W ++I G AK G+I +R++FD
Sbjct: 128 LENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFD 187
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
KM +N VSW++MI+GYV+ F EA+E F+ MQ G +P+ +V L ACA LGAL Q
Sbjct: 188 KMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQ 247
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G WIH Y+ +N L+ I+ TAIIDMY+KCG I+ A VF S P + + + SLI GLA
Sbjct: 248 GEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAM 307
Query: 299 HDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQ 334
+ A+ LF +++ + P+ MSE Y IEP ++
Sbjct: 308 SGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIK 367
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY C+VD+LGRAG+LE A+++++ MP+ PD + G+LL++CR +G++++ K+ + + E
Sbjct: 368 HYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNEL 427
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ +LLSN+YA+ + + R +++ ++ K PGCSLIEV+G V EFV+G R
Sbjct: 428 DPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRL 487
Query: 455 NVLMEEI 461
+ ++I
Sbjct: 488 HPRSKDI 494
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 185/493 (37%), Positives = 278/493 (56%), Gaps = 26/493 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + Q + G D + + I CS+ SH +F +++NT+I
Sbjct: 54 LKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHS--IFTHKTRPDIYLYNTII 111
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + +A LY ++L SD + Y+ F+L+A + VG H Q I G
Sbjct: 112 KALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLV 171
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S V+ L+ +Y++C C+ AR+LFD RDV W +++ GYAK G + AR +F++M
Sbjct: 172 SDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERM 231
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N +SW+A+I GY Q+D EA+ F MQL P+ ++ AL+ACA LGAL+ G
Sbjct: 232 PERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGE 291
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y+D++G+ + L A+IDMYAKCG IE A VF +M ++ V +TS+I GLA H
Sbjct: 292 WIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHG 351
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
A+E+F M+ + PNE M YGI+P +QHY
Sbjct: 352 LGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHY 411
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC++DLLGRAG L+ A+++VR MP E + + G+LL A R+HGD +LGK+ ++ L++
Sbjct: 412 GCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEP 471
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ G + LLSNIYA+ +WN VR+ M D V+K+PG S IEV+ V EFV+G++ +
Sbjct: 472 HNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHP 531
Query: 457 LMEEIVLLLFGID 469
E I +L I+
Sbjct: 532 QSERIFEVLCKIN 544
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 195/545 (35%), Positives = 307/545 (56%), Gaps = 64/545 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKII---GFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
+ +KQ + + +G L D + G ++ S + R+F ++ F+WN
Sbjct: 47 LHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWN 106
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
MI+ E NEP KA LY +M+ + F PN YT+ +L+AC+D + G+ HA +++
Sbjct: 107 CMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKH 166
Query: 118 GWESYDFVLNGLLHLYAT----------------------CNCM----------DPARKL 145
G +L+ + +YA+ N M + AR+L
Sbjct: 167 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 226
Query: 146 FDMSVNRDVIS-WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
F+ +R +IS W ++I+G+++ G + +AR+ FD+M E++ +SWSAMI+GY+Q F EA
Sbjct: 227 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 286
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
LE F+ MQ RP + L+ACA LGALDQGRWIH Y RN I+LD +LGT+++DM
Sbjct: 287 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 346
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--- 321
YAKCG I+ A VF+ M N++V ++ ++I GLA H ++ AI+LF +M + PNE
Sbjct: 347 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITF 403
Query: 322 ---------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
SM + YG+EP ++HYGC+VDLLGRAG+L A+KVV +P
Sbjct: 404 VGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 463
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420
EP V GALL ACR HG+V+LG+ + L+E + G + LLSNIYA +W V +
Sbjct: 464 TEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGE 523
Query: 421 VRRGMEDNEVRKVPGCSLIEV-DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
VR+ M++ ++ PG S+I++ G V +F+ G+ ++ +++I +L + + L+ +
Sbjct: 524 VRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEP 583
Query: 480 DGNEV 484
D ++V
Sbjct: 584 DPSQV 588
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 186/511 (36%), Positives = 296/511 (57%), Gaps = 29/511 (5%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+QIKQ+ + L +G + P K++ S S +S+ + +F F++NT+I+
Sbjct: 15 RQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPDLFLYNTIIK 73
Query: 62 GFA-EKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
A +F ++ ++R + L PN Y+F+F + C + G I+LG
Sbjct: 74 VLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGL 133
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E+ FV N L+ +Y + + ARK+FD S NRD+ SW +++GYA+ G++ ARQ+FD+
Sbjct: 134 ENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDE 193
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPEK+ VSW+ MI+G +QV F EAL+ F+ M G PN + +L ACA L ALDQG
Sbjct: 194 MPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQG 253
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLA 297
RW+H Y+ +N I+++ L +IDMYAKCG +E A +F+S P R V+ + ++I G A
Sbjct: 254 RWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFA 313
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H +S AIE+F +M++E V PN ESM+ Y ++P +
Sbjct: 314 VHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPEL 373
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVDLLGRAG L+ A++++ M + PD + GALL+AC++H D ++G+ + + E
Sbjct: 374 EHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKE 433
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+H G HVLL+NIY+ T WN +R + ++ +K PGCS IE++G+ +F+ G+R
Sbjct: 434 LDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDR 493
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ +++ L L + LK + + EV
Sbjct: 494 SHPQTKQLYLFLDEMITKLKIAGYIPESGEV 524
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 187/491 (38%), Positives = 282/491 (57%), Gaps = 30/491 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDL-SHGYRLFVCLQYRTTFIWNTM 59
+ Q+KQI ++L S PFA+G+++ + S+ SH +F L R F++N+M
Sbjct: 24 LSQLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFFSHACLIFQNLSLRNIFMYNSM 83
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLICHAQVIRL 117
IRG+ + P +A Y ML L NNYTF +++AC +S +G + HA V+
Sbjct: 84 IRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTF 143
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G++ FV++ L+ Y+ M AR LFD NRDV+ WT++I+GY K G + AR +F
Sbjct: 144 GFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILF 203
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
+ MPE+NA+SWSA++ Y +V FKE L F MQ G PN + +V LTACA LGAL
Sbjct: 204 EDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALA 263
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
QG W+H+Y + + + IL TA++DMY+KCGC+E+A S F +PN+D A+ ++ISG+A
Sbjct: 264 QGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVA 323
Query: 298 NHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGV 333
+ + ++ELF +M G P E+ MS YG+EP +
Sbjct: 324 MNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQL 383
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETVES 390
+HY CLVDL+ RAGML A+K + E D V GA+L ACR +G++++G +
Sbjct: 384 EHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKK 443
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
L + + G HVL N+Y ++VRR + + ++K PGCS+IEVDG V EF++
Sbjct: 444 LADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEAGMKKKPGCSIIEVDGTVEEFLA 503
Query: 451 GERTNVLMEEI 461
G+ ++ +I
Sbjct: 504 GDLSHSQAPQI 514
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 184/493 (37%), Positives = 278/493 (56%), Gaps = 26/493 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + Q + G D + + I CS+ SH +F +++NT+I
Sbjct: 54 LKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHS--IFTHKTRPDIYLYNTII 111
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + +A LY ++L SD + Y+ F+L+A + VG H Q I G
Sbjct: 112 KALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLV 171
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S V+ L+ +Y++C C+ AR+LFD RDV W +++ GYAK G + AR +F++M
Sbjct: 172 SDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERM 231
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N +SW+A+I GY Q+D EA+ F MQL P+ ++ AL+ACA LGAL+ G
Sbjct: 232 PERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGE 291
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y+D++G+ + L A+IDMYAKCG IE A VF +M ++ V +TS+I GLA H
Sbjct: 292 WIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHG 351
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
A+E+F M+ + PNE M YGI+P +QHY
Sbjct: 352 LGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHY 411
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC++DLLGRAG L+ A+++VR MP E + + G+LL A R+HGD +LGK+ ++ L++
Sbjct: 412 GCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEP 471
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ G + LLSNIYA+ +WN VR+ M D V+K+PG S IEV+ V EFV+G++ +
Sbjct: 472 HNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHP 531
Query: 457 LMEEIVLLLFGID 469
E I +L J+
Sbjct: 532 QSERIFEVLCKJN 544
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 182/483 (37%), Positives = 278/483 (57%), Gaps = 34/483 (7%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + ++ H+ + +I+ C+A ++H R+F ++ + N MI+
Sbjct: 28 RDLLRVHGHVVRLRISQSSYLATQIVHLCNAHR--RVTHAARVFAQVRDPNLHLHNAMIK 85
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLP-------NNYTFSFILRACADTSCLFVGLICHAQV 114
+A+ ++ A A+Y +MLR P + +T+ F+L+AC T+ L +G H V
Sbjct: 86 AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+R G +S V N L+ +Y + A K+FD RDV+SW LI+ +A+ GQ+ A
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKAT 205
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+F+ MP+K V+W+AM++GY V + A++ F MQ GF P+ IV L ACA LG
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLG 265
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
AL+ GRWI+AY R+G+ + A+++MYAKCGCI+ A +FD M ++DV +++++I
Sbjct: 266 ALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIG 325
Query: 295 GLANHDQSASAIELFMRMQLEGVV-PN------------------------ESMSEIYGI 329
GLA H ++ A+ LF M+ EG V PN + M+++YG+
Sbjct: 326 GLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGV 385
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EPGV+HYGC+VDLLGR+G + A +VR+MP+ D V G+LL+ACR HGDVD E
Sbjct: 386 EPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
LVE D G V+L+N+YA+ +W+ V R+ + +RK PGCSLIEV VV EFV
Sbjct: 446 RLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFV 505
Query: 450 SGE 452
+GE
Sbjct: 506 AGE 508
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 200/494 (40%), Positives = 286/494 (57%), Gaps = 38/494 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT---TFIWN 57
+ QIKQI + + G + +G +I S IG + + V Q+ + T IWN
Sbjct: 68 LTQIKQIHAQVVTHGLAQNTSLLGPLI----HSYIGCRNLSFARIVFDQFPSLPPTIIWN 123
Query: 58 TMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCLF-VGLICHAQV 114
MI+ +++ ++ L+ QML + YTF+F+ AC+ L G H V
Sbjct: 124 LMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMV 183
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
++ G+ES FV N L+++Y+ + M A+++FD RDVI+WTS++ GYA G++ AR
Sbjct: 184 VKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRAR 243
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG--FRPNHAGIVGALTACAF 232
++FD MP +N VSW+ M+ GYV + EAL+ FN M LC +PN A +V L+ACA
Sbjct: 244 ELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDM-LCHDEVKPNEAVLVSILSACAH 302
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGALDQG+WIH Y+D+N I L + TA+IDMYAKCG I+ A VFD + RD+ +TS+
Sbjct: 303 LGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSM 362
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYG 328
ISGL+ H A + F M EG P++ M ++G
Sbjct: 363 ISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWG 422
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I P ++HYGCL+DLLGRAG LE+A + ++ MP+EPD ALL+ACR+HGDVDLG+ +
Sbjct: 423 IVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERII 482
Query: 389 ESLVERSL-DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ E H G +VLLSN+YAS QW V KVR+ M PGCS IE+DGVV E
Sbjct: 483 NHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHE 542
Query: 448 FVSGERTNVLMEEI 461
F++ ++ + + EI
Sbjct: 543 FLAADKLHPRISEI 556
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 182/483 (37%), Positives = 278/483 (57%), Gaps = 34/483 (7%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + ++ H+ + +I+ C+A ++H R+F ++ + N MI+
Sbjct: 28 RDLLRVHGHVVRLRISQSSYLATQIVHLCNAHR--RVTHAARVFAQVRDPNLHLHNAMIK 85
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLP-------NNYTFSFILRACADTSCLFVGLICHAQV 114
+A+ ++ A A+Y +MLR P + +T+ F+L+AC T+ L +G H V
Sbjct: 86 AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+R G +S V N L+ +Y + A K+FD RDV+SW LI+ +A+ GQ+ A
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKAT 205
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+F+ MP+K V+W+AM++GY V + A++ F MQ GF P+ IV L ACA LG
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLG 265
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
AL+ GRWI+AY R+G+ + A+++MYAKCGCI+ A +FD M ++DV +++++I
Sbjct: 266 ALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIG 325
Query: 295 GLANHDQSASAIELFMRMQLEGVV-PN------------------------ESMSEIYGI 329
GLA H ++ A+ LF M+ EG V PN + M+++YG+
Sbjct: 326 GLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGV 385
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EPGV+HYGC+VDLLGR+G + A +VR+MP+ D V G+LL+ACR HGDVD E
Sbjct: 386 EPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
LVE D G V+L+N+YA+ +W+ V R+ + +RK PGCSLIEV VV EFV
Sbjct: 446 RLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFV 505
Query: 450 SGE 452
+GE
Sbjct: 506 AGE 508
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/465 (40%), Positives = 277/465 (59%), Gaps = 33/465 (7%)
Query: 53 TFIWNTMIRGFAE-KNEPI----KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
+F+WNT+IR + + +P +++ +M P+ +TF F+L++ A S L +G
Sbjct: 24 SFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLG 83
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
HAQ++R G FV L+ +Y++C + AR++FD D+ SW S+IN ++
Sbjct: 84 RSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQA 143
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF---RPNHAGIV 224
G + +AR +F MPE+N +SWS MINGYV+ +KEAL F MQ+ G RPN +
Sbjct: 144 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 203
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PN 283
G L AC LGAL+ G+W HAY+D+ G+ +D++LGTA+IDMYAKCG +E A VF ++ PN
Sbjct: 204 GVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPN 263
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------------- 320
+DV A++++ISGLA H + + LF +M +GV PN
Sbjct: 264 KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDY 323
Query: 321 -ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
M+E Y I P +QHYGC+VDL GRAG ++ A VV+ MP+EPD V GALL+ R+HG
Sbjct: 324 LRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 383
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
D++ + ++ L+E + G +VLLSN+YA +W V VR ME ++KVPGCSLI
Sbjct: 384 DIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLI 443
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EV GV+ EF G+ ++ +I ++L I + LK + + EV
Sbjct: 444 EVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEV 488
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 164/394 (41%), Gaps = 74/394 (18%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR---SDFLPNNYTFSFILRACAD 100
LF + R W+ MI G+ + +A AL+++M +D PN +T S +L AC
Sbjct: 152 LFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGR 211
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLF-DMSVNRDVISWT 158
L G HA + + G D VL L+ +YA C ++ A +F ++ N+DV++W+
Sbjct: 212 LGALEHGKWAHAYIDKCG-MPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWS 270
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
++I+G A G +F KM + G RP
Sbjct: 271 AMISGLAMHGLAEECVGLFSKMINQ-------------------------------GVRP 299
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA----IIDMYAKCGCIETA 274
N + AC G + +G+ Y+ R + II ++D+Y + G I+ A
Sbjct: 300 NAVTFLAVFCACVHGGLVSEGK---DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEA 356
Query: 275 CSVFDSMP-NRDVFAYTSLISGLANH-DQSASAIELFMRMQLEGVVPNES-----MSEIY 327
+V SMP DV + +L+SG H D + L ++LE P S +S +Y
Sbjct: 357 WNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELE---PTNSGAYVLLSNVY 413
Query: 328 ---GIEPGVQHYGCLVDLLGRAGM----LEAAKKVVREMPIEPDNY--------VLGALL 372
G V+H L++ +G + L V+ E + D++ +L +L
Sbjct: 414 AKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEIL 473
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406
+V G V KE V LD EG + LS
Sbjct: 474 ERLKVEGYVGNTKE-----VLLDLDEEGKELALS 502
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/545 (35%), Positives = 307/545 (56%), Gaps = 64/545 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKII---GFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
+ +KQ + + +G L D + G ++ S + R+F ++ F+WN
Sbjct: 48 LHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWN 107
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
MI+ E NEP KA LY +M+ + PN YT+ +L+AC+D+ + G+ HA +++
Sbjct: 108 CMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKH 167
Query: 118 GWESYDFVLNGLLHLYAT----------------------CNCM----------DPARKL 145
G +L+ + +YA+ N M + AR+L
Sbjct: 168 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 227
Query: 146 FDMSVNRDVIS-WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
F+ +R +IS W ++I+G+++ G + +AR+ FD+M E++ +SWSAMI+GY+Q F EA
Sbjct: 228 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 287
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
LE F+ MQ RP + L+ACA LGALDQGRWIH Y RN I+LD +LGT+++DM
Sbjct: 288 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 347
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--- 321
YAKCG I+ A VF+ M N++V ++ ++I GLA H ++ AI+LF +M + PNE
Sbjct: 348 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITF 404
Query: 322 ---------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
SM + YG+EP ++HYGC+VDLLGRAG+L A+KVV +P
Sbjct: 405 VGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 464
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420
EP V GALL ACR HG+V+LG+ + L+E + G + LLSNIYA +W V +
Sbjct: 465 TEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGE 524
Query: 421 VRRGMEDNEVRKVPGCSLIEV-DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
VR+ M++ ++ PG S+I++ G V +F+ G+ ++ +++I +L + + L+ +
Sbjct: 525 VRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEP 584
Query: 480 DGNEV 484
D ++V
Sbjct: 585 DPSQV 589
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 181/483 (37%), Positives = 277/483 (57%), Gaps = 34/483 (7%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + ++ H+ + +I+ C+A ++H R+F ++ + N MI+
Sbjct: 28 RDLLRVHGHVVRLRISQSSYLATQIVHLCNAHR--RVTHAARVFAQVRDPNLHLHNAMIK 85
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLP-------NNYTFSFILRACADTSCLFVGLICHAQV 114
+A+ ++ A A+Y +MLR P + +T+ F+L+AC T+ L +G H V
Sbjct: 86 AYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHV 145
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+R G +S V N L+ +Y + A K+FD RDV+SW LI+ +A+ GQ+ A
Sbjct: 146 VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKAT 205
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+F+ MP+K V+W+AM++GY V + A++ F MQ GF P+ IV L ACA LG
Sbjct: 206 ALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLG 265
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L+ GRWI+AY R+G+ + A+++MYAKCGCI+ A +FD M ++DV +++++I
Sbjct: 266 TLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIG 325
Query: 295 GLANHDQSASAIELFMRMQLEGVV-PN------------------------ESMSEIYGI 329
GLA H ++ A+ LF M+ EG V PN + M+++YG+
Sbjct: 326 GLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGV 385
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EPGV+HYGC+VDLLGR+G + A +VR+MP+ D V G+LL+ACR HGDVD E
Sbjct: 386 EPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAE 445
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
LVE D G V+L+N+YA+ +W+ V R+ + +RK PGCSLIEV VV EFV
Sbjct: 446 RLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFV 505
Query: 450 SGE 452
+GE
Sbjct: 506 AGE 508
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 196/545 (35%), Positives = 299/545 (54%), Gaps = 91/545 (16%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L++ +F LQ ++N++IR + P++A LY ML+S P++ T+ F+++A
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 204
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT-------------CNCMD---- 140
C ++S + GL+ H V++ G+E ++++ L+HLYA C+ D
Sbjct: 205 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 264
Query: 141 --------------PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
AR +FD V RDVISW ++INGYA G+I A+++FD+MPE+N V
Sbjct: 265 NAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLV 324
Query: 187 SWSAMINGYVQV----DLF---------------------------KEALEHFNYMQLCG 215
SW++M+ G+V+ D F EAL F+ M+ G
Sbjct: 325 SWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG 384
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P A +V L+ACA LGALD+G +H Y++ N IE++ I+GTA++DMYAKCG I A
Sbjct: 385 VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLAT 444
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
VF++M ++DV A+ ++I+G+A H A +LF M+ GV PN
Sbjct: 445 QVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAG 504
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+ MS YGIEP V+HYGC++DLL RAG LE A +++ MP+EP+ LGAL
Sbjct: 505 MVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGAL 564
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L CR+HG+ +LG+ + L+ H G ++LLSNIYA+ ++W+ KVR M+ N +
Sbjct: 565 LGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGIS 624
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSL 491
KVPG S+IE+ G+V FV+G+ ++ +I L I LKS + A G L
Sbjct: 625 KVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYS-----ADTGNVL 679
Query: 492 LDCQK 496
LD ++
Sbjct: 680 LDMEE 684
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 36/231 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S ++F ++ + WNT+I G A +A L+K+M + PN+ TF IL
Sbjct: 438 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 497
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ HA ++ G + D CM + + V
Sbjct: 498 SACS-----------HAGMVDEGQKLLD--------------CMSSS-----YGIEPKVE 527
Query: 156 SWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+ +I+ A++G + A ++ MP E N + A++ G F+ L +L
Sbjct: 528 HYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFE--LGEMVGKRLI 585
Query: 215 GFRPNHAGIVGALTAC-AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
+P H+G L+ A D R + + NGI + G ++I++
Sbjct: 586 NLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISK--VPGVSVIEL 634
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 191/555 (34%), Positives = 302/555 (54%), Gaps = 88/555 (15%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QI QI + L + + D FA +++ + + ++++ +F + +FI NTM++
Sbjct: 26 QILQIHAQLITTNLISDTFAASRLLDSVVSKTL-NVNYAELVFAQIHQPNSFICNTMVKC 84
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ E + P +A Y +M R L +NYT+ F+L+AC L G + + ++ G+
Sbjct: 85 YTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGD 144
Query: 123 DFVL-------------------------------NGLLHLYATCNCMDPARKLFDMSVN 151
FV+ N +L Y C M+ A+ +FD
Sbjct: 145 VFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPE 204
Query: 152 RDVISWT--------------------------------SLINGYAKSGQISIARQMFDK 179
RDV+SW+ S+I+GYAK G++ +AR++FDK
Sbjct: 205 RDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDK 264
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +KN +SWS MI+GY Q KEAL F M G +P+ +VGA++AC+ LGALDQG
Sbjct: 265 MLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQG 324
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIH Y+ RN + LDI++ TA++DMY KCG + A +F+SMP R+V ++ +I GL +
Sbjct: 325 RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMN 384
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
A+E F +M++E + ++ M +Y +EP ++H
Sbjct: 385 GFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEH 444
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVDLLGRAG L+ + +++ MP++P+ + G+LL ACR+H +V L + VE L E
Sbjct: 445 YGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELK 504
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
D GV+VL+SNIYA W G+ ++R+ M++ +++K G S+IEVDG V EFVSGE+++
Sbjct: 505 ADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSH 564
Query: 456 VLMEEIVLLLFGIDK 470
+L EEI L+++ + K
Sbjct: 565 ILREEIELVIWSLAK 579
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 278/483 (57%), Gaps = 34/483 (7%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + ++ +H + +I+ C+A G ++H R+F ++ + N MI+
Sbjct: 27 RDLLRVHAHAVRLSLSQSSYLATQIVHLCNAH--GRVAHATRVFSQVREPNLHLHNAMIK 84
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLP-------NNYTFSFILRACADTSCLFVGLICHAQV 114
+A+ + + A +Y +MLR P + +T+ F+L+AC L +G H V
Sbjct: 85 AYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHV 144
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+R G ES V N L+ +Y + ARK+FD RDV+SW ++I+ +A+ GQ+ AR
Sbjct: 145 VRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKAR 204
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+F+ MP+K VSW+A+++GY F A+E F MQ+ GF P+ IV L ACA LG
Sbjct: 205 AVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLG 264
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
AL+ GRWI+AY +R+ + + + A+++MYAKCGCI+ A +F+ M +DV ++++++
Sbjct: 265 ALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVG 324
Query: 295 GLANHDQSASAIELFMRMQLEGVV-PN------------------------ESMSEIYGI 329
GLA H ++ A++LF M+ +G V PN + M+++YGI
Sbjct: 325 GLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGI 384
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EPGV+HYGC+VDLL R+G ++ ++ +MP+ D + G++LNACR HGDVD E
Sbjct: 385 EPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAE 444
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
LV + G V+L+N+YA+ +W+ V R+ + +RK PGCSLIEVD VV EFV
Sbjct: 445 RLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEVDNVVQEFV 504
Query: 450 SGE 452
+GE
Sbjct: 505 AGE 507
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 283/478 (59%), Gaps = 29/478 (6%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-----LSHGYRLFVCLQYRTTFIWNT 58
+K I L + + D F +++ C + L + Y +F +Q F++N
Sbjct: 28 LKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNL 87
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IR F+ EP KAF Y QML+S P+N TF F+++A ++ C+ VG H+Q++R G
Sbjct: 88 LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFG 147
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+++ +V N L+H+YA C + A ++F RDV+SWTS++ GY K G + AR+MFD
Sbjct: 148 FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFD 207
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP +N +WS MINGY + + F++A++ F +M+ G N +V +++CA LGAL+
Sbjct: 208 EMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEF 267
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G + YV ++ + +++ILGTA++DM+ +CG IE A VF+ +P D +++S+I GLA
Sbjct: 268 GERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAV 327
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + A+ F +M G +P E+M + +GIEP ++
Sbjct: 328 HGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLE 387
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VD+LGRAG L A+ + +M ++P+ +LGALL AC+++ + ++ + L++
Sbjct: 388 HYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKV 447
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+H G +VLLSNIYA QW+ +E +R M++ V+K PG SLIE+DG + +F G+
Sbjct: 448 KPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGD 505
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 182/498 (36%), Positives = 289/498 (58%), Gaps = 26/498 (5%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K+++QI + L V GTL D VG + + SD L + ++ + T F N+MIR
Sbjct: 20 KEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIR 79
Query: 62 GFAEKNEPIKAFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ P K+F Y+++L S D P+NYT +F+++AC GL H IR G+
Sbjct: 80 AHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGF 139
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
++ V GL+ LYA C+D K+F+ D + T+++ A+ G + AR++F+
Sbjct: 140 DNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEG 199
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE++ ++W+AMI+GY QV +EAL F+ MQL G + N ++ L+AC LGALDQG
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RW H+Y++RN I++ + L T ++D+YAKCG +E A VF M ++V+ ++S ++GLA +
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
+ELF M+ +GV PN +SM +GIEP ++H
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVDL RAG LE A ++++MP++P V +LL+A R++ +++LG + ++E
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +VLLSNIYA + W+ V VR+ M+ VRK PGCS++EV+G V EF G++++
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 499
Query: 456 VLMEEIVLLLFGIDKHLK 473
+I + I + L+
Sbjct: 500 PKYTQIDAVWKDISRRLR 517
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 194/495 (39%), Positives = 276/495 (55%), Gaps = 56/495 (11%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+KQI + + V G + A+ ++I S + G +++ ++LF + TF+WNTMIRG
Sbjct: 29 LKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGS 88
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
A+ P+ A +LY QM P+ +TF F+L+AC + +G H +V RLG+ES
Sbjct: 89 AQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNT 148
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV N L++ +A C + AR LFD S RDV++W++L GYA+ G++ +ARQ+FD+MP K
Sbjct: 149 FVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVK 208
Query: 184 NAVSWSAMINGYVQ-------VDLFKE------------------------ALEHFNYMQ 212
+ VSW+ MI GY + LF E ALE F M+
Sbjct: 209 DLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMR 268
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI-ELDIILGTAIIDMYAKCGCI 271
G P+ ++ L+AC LG LD G+ IH + G +L ++LG A+IDMYAKCG I
Sbjct: 269 SVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSI 328
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------- 322
A VF M +DV + S++ GLA H + +I LF M+ + P+E
Sbjct: 329 VRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVAC 388
Query: 323 ---------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
M + Y IEP ++HYGC+VDLLGRAG+L A + M IEP+ V
Sbjct: 389 SHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIV 448
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
LL ACR+HG+V+LG+ L++ D G +VLLSNIYAS +W+GVEKVR+ M+D
Sbjct: 449 WRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDD 508
Query: 428 NEVRKVPGCSLIEVD 442
+ VRK GCSLIE D
Sbjct: 509 SGVRKEAGCSLIEGD 523
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 287/496 (57%), Gaps = 27/496 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ ++K+I +H+ F V K++ C ++ + + +F L+ F +N +I
Sbjct: 20 IAELKKIHAHIVKLSLSQSNFLVTKMLDLCD--NLSHVDYATMIFQQLENPNVFSYNAII 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R + ++ A ++ QML + P+ +TF F++++CA C +G HA V + G
Sbjct: 78 RTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGP 137
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+++ N L+ +Y C M A ++++ RD +SW SLI+G+ + GQ+ AR++FD+
Sbjct: 138 KTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDE 197
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP + VSW+ MINGY + + +AL F MQ+ G P+ ++ L ACA LGAL+ G
Sbjct: 198 MPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVG 257
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WIH Y +++G + + A+++MYAKCGCI+ A +F+ M +DV +++++I GLANH
Sbjct: 258 KWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANH 317
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
+ +AI +F MQ GV PN + M Y +EP ++H
Sbjct: 318 GKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEH 377
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVDLLGR+G +E A + +MP++PD+ +LL++CR+H ++++ +E L++
Sbjct: 378 YGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLE 437
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +VLL+NIYA ++W GV VR+ + ++K PGCSLIEV+ +V EFVSG+ +
Sbjct: 438 PEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSK 497
Query: 456 VLMEEIVLLLFGIDKH 471
+E+ +L G+ H
Sbjct: 498 PFSQEVFWILKGLTLH 513
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/426 (40%), Positives = 264/426 (61%), Gaps = 27/426 (6%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
MLR+ LP+NY+F F+L+ACA S L G H+ ++LG FV N L+ +++C
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 139 MDPARKLFDM--SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV 196
++ AR +FDM ++ RDV+SW S+I+GY +S + +A ++FD++P +N V W++MI GY
Sbjct: 61 VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
Q DLFKEA+E F MQ+ GF + A I L+AC GAL QGRWIH Y +RN IE+D+
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLN 180
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL-E 315
A+I MY+KCG I+ A +F + D+F+++++ISGLA + +S A+ LF +M++
Sbjct: 181 ARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMIS 240
Query: 316 GVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
+ PNE +M++IY + PG++HYGC+VDLLGRA +L
Sbjct: 241 DIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVE 300
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411
A+K +R +PI+PD + +LL ACR HG+++L + + + E G VLLSN+YAS
Sbjct: 301 AEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYAS 360
Query: 412 TEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKH 471
+W V++VR+ M ++K PGCS +E+DG+V E +R++ M I + I+K
Sbjct: 361 ASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINKA 420
Query: 472 LKSLCF 477
L+S F
Sbjct: 421 LQSKGF 426
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 122/292 (41%), Gaps = 44/292 (15%)
Query: 39 SHGYRL----FVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
SH Y L F + +R T W +MI G+A+ + +A L+++M F + T + +
Sbjct: 91 SHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACV 150
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L AC L G W +HLY N S+ D+
Sbjct: 151 LSACGHWGALAQG----------RW----------IHLYCERN-----------SIEMDL 179
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+ +LI Y+K G I A ++F + + + SWSA+I+G +AL F+ M++
Sbjct: 180 NARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMI 239
Query: 215 G-FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
RPN +G L AC G +D+G + +A + I ++D+ + +
Sbjct: 240 SDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLV 299
Query: 273 TACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIEL--FMRMQLEGVVPNE 321
A ++P DV + SL+ NH IEL F Q+E + P
Sbjct: 300 EAEKFIRTLPIQPDVVIWRSLLFACRNHGN----IELAEFAAKQIEELEPRR 347
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNNYTF 91
S GD+ +F L F W+ +I G A E KA L+ QM + SD PN TF
Sbjct: 190 SKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITF 249
Query: 92 SFILRAC-----ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
+L AC D + + + G E Y +++ L N + A K
Sbjct: 250 LGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVD----LLGRANLLVEAEKFI 305
Query: 147 -DMSVNRDVISWTSLINGYAKSGQISIA 173
+ + DV+ W SL+ G I +A
Sbjct: 306 RTLPIQPDVVIWRSLLFACRNHGNIELA 333
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 277/476 (58%), Gaps = 24/476 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ +LF ++ + W+ +I + + +A L+K+M + + + +L
Sbjct: 237 GNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVL 296
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ + G + H V+++G E+Y + N L+H+Y++C + A+KLF S D I
Sbjct: 297 SACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQI 356
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I+GY K G+I AR +FD MP+K+ VSWSAMI+GY Q D F E L F MQ+ G
Sbjct: 357 SWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEG 416
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ +V ++AC L ALDQG+WIHAY+ +NG++++IILGT +I+MY K GC+E A
Sbjct: 417 TKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDAL 476
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF + + V + +LI GLA + +++ F M+ GV PNE
Sbjct: 477 EVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMG 536
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM + + I P ++HYGC+VDLLGRAGML+ A++++ MP+ PD GAL
Sbjct: 537 LVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGAL 596
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L AC+ +GD + G+ LVE DH+G +VLLSNIYAS W V +VR M + V
Sbjct: 597 LGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVV 656
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
K PGCS+IE G V EF++G++T+ E I +L + K LK + D EV+ +
Sbjct: 657 KTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLD 712
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 138/513 (26%), Positives = 237/513 (46%), Gaps = 119/513 (23%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+KQ QI S + +SG D FA +++ F + +++ Y++F ++ FI NTM+
Sbjct: 39 IKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMM 98
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G+ ++N P KA +YK ML S+ +NYT+ + ++C+ F G V+++G++
Sbjct: 99 KGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFD 158
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S ++ N L+++YA C + ARK+FD S D++SW S++ GY G + A+ ++D+M
Sbjct: 159 SDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM 218
Query: 181 PEKNA-------------------------------VSWSAMINGYVQVDLFKEALEHFN 209
PE+N VSWSA+I+ Y Q ++++EAL F
Sbjct: 219 PERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFK 278
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA--- 266
M G + ++ L+AC+ L + G+ +H V + GIE + L A+I MY+
Sbjct: 279 EMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCE 338
Query: 267 ----------------------------KCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
KCG IE A ++FDSMP++D +++++ISG A
Sbjct: 339 EVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQ 398
Query: 299 HDQSASAIELFMRMQLEGVVPNESM--------SEIYGIEPG--VQHY------------ 336
D+ + LF MQ+EG P+E++ + + ++ G + Y
Sbjct: 399 QDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIIL 458
Query: 337 -----------GCLVD-------------------LLGRA--GMLEAAKKVVREMP---I 361
GC+ D +LG A G+++ + K EM +
Sbjct: 459 GTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGV 518
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
P+ A+L ACR G VD G S+++
Sbjct: 519 TPNEITFVAVLGACRHMGLVDEGHRHFNSMIQE 551
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 278/468 (59%), Gaps = 28/468 (5%)
Query: 31 SASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90
S + +G L + LF Q + F W +I G A + +A Y QML PN +T
Sbjct: 71 SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFT 130
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
FS IL+ C + G H+Q ++LG++S +V GLL +YA + A++LFD
Sbjct: 131 FSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 186
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ ++S T+++ YAK G++ AR +FD M E++ V W+ MI+GY Q + EAL F
Sbjct: 187 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 246
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M +PN ++ L+AC LGAL+ GRW+H+Y++ NGI+ ++ +GTA++DMY+KCG
Sbjct: 247 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 306
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
+E A VFD + ++DV A+ S+I G A H S A++LF M G+ P
Sbjct: 307 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 366
Query: 321 --------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
M + YGIEP ++HYGC+V+LLGRAG +E A ++V+ M IEPD
Sbjct: 367 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 426
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ G LL ACR+HG + LG++ VE LV+++L + G ++LLSNIYA+ W+GV ++R M+
Sbjct: 427 LWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMK 486
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
D+ V+K PGCS IEV+ V EF++G + +EI ++L I+ LKS
Sbjct: 487 DSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKS 534
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 132/291 (45%), Gaps = 26/291 (8%)
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
LF ++ I L YA G++ + +F + + W+A+I+G+ L ++A
Sbjct: 53 LFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQA 112
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
L + M G PN L C ++ G+ +H+ + G + D+ + T ++D+
Sbjct: 113 LNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDV 168
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324
YA+ G + +A +FD+MP + + + T++++ A H + +A LF + M
Sbjct: 169 YARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLF-----------DGME 217
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDV 381
E G+ + ++D + GM A + R M +P+ + ++L+AC G +
Sbjct: 218 ERDGVC-----WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 272
Query: 382 DLGKETVESLVERSLDHEGVHV--LLSNIYASTEQWNGVEKVRRGMEDNEV 430
+ G+ V S +E + VHV L ++Y+ V ++D +V
Sbjct: 273 ESGR-WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 322
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IHA + R+G++ IL + YA G ++ + ++F N VF +T++I G A
Sbjct: 49 IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108
Query: 302 SASAIELFMRMQLEGVVPN----ESMSEIYGIEPGVQHYG---------------CLVDL 342
A+ + +M +GV PN S+ ++ IEPG + L+D+
Sbjct: 109 HEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDV 168
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
R G + +A+++ MP E L A+L HG++D + + + ER
Sbjct: 169 YARGGDVVSAQQLFDTMP-EKSLVSLTAMLTCYAKHGELDAARVLFDGMEER 219
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 279/485 (57%), Gaps = 28/485 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCL--QYRTTFIWNTMI 60
+++Q+ + + + + ++ C+ + + ++F C+ Q TF+WN+ +
Sbjct: 43 ELRQVHAQIIKTNAPLSILPLTRVGLVCAFTP--SFHYAQQIFKCVEKQKPETFVWNSCL 100
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ AE + PI A L+ ++ + D P+ +T S +LRAC + L G I H V ++G+
Sbjct: 101 KALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR 160
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S ++ N ++HLYA+C M AR LF+ RDV++W +I K G A +F +M
Sbjct: 161 SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRM 220
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N SW++MI GYVQ KEA+ F M+ G + N +V L ACA LGALD G
Sbjct: 221 PERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGM 280
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y +R+G + ++ + +IDMY KCGC+E AC VF+ M R V +++++I GLA H
Sbjct: 281 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG 340
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
++ A+ LF M G+ PN SM+ YGI P ++HY
Sbjct: 341 RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHY 400
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLL RAG+L A + + MP++P+ V GALL ACRVH +V++ +E ++ L+E
Sbjct: 401 GCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDP 460
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
++G +V+LSNIYA +W +VR+ M+D +V+K PG S I VDGVV EFV+GE ++
Sbjct: 461 LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHP 520
Query: 457 LMEEI 461
E+I
Sbjct: 521 DTEQI 525
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 279/485 (57%), Gaps = 28/485 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCL--QYRTTFIWNTMI 60
+++Q+ + + + + ++ C+ + + ++F C+ Q TF+WN+ +
Sbjct: 43 ELRQVHAQIIKTNAPLSILPLTRVGLVCAFTP--SFHYAQQIFECVEKQKPETFVWNSCL 100
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ AE + PI A L+ ++ + D P+ +T S +LRAC + L G I H V ++G+
Sbjct: 101 KALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR 160
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S ++ N ++HLYA+C M AR LF+ RDV++W +I K G A +F +M
Sbjct: 161 SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRM 220
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+N SW++MI GYVQ KEA+ F M+ G + N +V L ACA LGALD G
Sbjct: 221 PERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGM 280
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y +R+G + ++ + +IDMY KCGC+E AC VF+ M R V +++++I GLA H
Sbjct: 281 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHG 340
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
++ A+ LF M G+ PN SM+ YGI P ++HY
Sbjct: 341 RAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHY 400
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLL RAG+L A + + MP++P+ V GALL ACRVH +V++ +E ++ L+E
Sbjct: 401 GCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDP 460
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
++G +V+LSNIYA +W +VR+ M+D +V+K PG S I VDGVV EFV+GE ++
Sbjct: 461 LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHP 520
Query: 457 LMEEI 461
E+I
Sbjct: 521 DTEQI 525
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/502 (37%), Positives = 287/502 (57%), Gaps = 32/502 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ Q+KQ+ +H+ P+A+ ++ +++D S+ +F L R TF+ NTM
Sbjct: 18 LTQLKQLHAHILRCRINDTPYALAPLLSVLATSNDASFFSYARSIFRHLTNRNTFMHNTM 77
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC----ADTSCLFVGLICHAQVI 115
IRG+ + P+ A + Y ML++ NNYTF +++AC + VG + H V+
Sbjct: 78 IRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHVV 137
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G + +V++ + Y+ +D AR LFD + +DV+ T++++GY K G + AR+
Sbjct: 138 KFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSARE 197
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FDKMPE+NAVSWSAM+ Y +V FKE L F MQ G PN + +V LTACA LGA
Sbjct: 198 VFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGA 257
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L QG W+H+Y R +E + IL TA++DMY+KCGC+E+A SVFD + ++D A+ ++ISG
Sbjct: 258 LTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISG 317
Query: 296 LANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEP 331
A + + +++LF +M PNE+ MS +YG+ P
Sbjct: 318 EALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVP 377
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETV 388
++HY C++DLL RAGM+E A+K + E D V GALLNACR+H ++ +G
Sbjct: 378 RMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVW 437
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ LV+ + G HVL NIY KVR +E+ ++K PGCS+IEVD V EF
Sbjct: 438 KKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEVEEF 497
Query: 449 VSGERTNVLMEEIVLLLFGIDK 470
++G+ ++ +E+ LL I K
Sbjct: 498 LAGDHSHPQAQEMCKLLDSILK 519
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 184/509 (36%), Positives = 291/509 (57%), Gaps = 26/509 (5%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K+I+QI + L V GTL D VG+ + + SD L + ++ T F N+MIR
Sbjct: 28 KEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNSMIR 87
Query: 62 GFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ P K+F Y ++L S P+NYT +F+++AC GL H IR G+
Sbjct: 88 AHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGF 147
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
++ V GL+ LYA C+D K+F+ D + T+++ A+ G ++ AR++F+
Sbjct: 148 DNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEG 207
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPEK+ ++W+AMI+GY QV +EAL F+ MQL G + N ++ L+AC LGALDQG
Sbjct: 208 MPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQG 267
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RW H+Y++RN I++ + LGT ++D+YAKCG ++ A VF M ++V+ ++S ++GLA +
Sbjct: 268 RWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMN 327
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
++LF M+ +GV PN +SM +GIEP + H
Sbjct: 328 GFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDH 387
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVDL RAG LE A ++++MP++ V +LL+A R++ +++LG + ++E
Sbjct: 388 YGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELE 447
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +VLLSNIYA ++ W+ V VR+ M+ VRK PGCS++EV+G V EF G++++
Sbjct: 448 TSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 507
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EI + I + L+ + D V
Sbjct: 508 PKYNEIDAVWKDISRRLRLAGYKADTTPV 536
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 212/439 (48%), Gaps = 57/439 (12%)
Query: 71 KAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG 128
K F + +M+RS+ F PN TF ++ AC G+ H V++ G
Sbjct: 618 KCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSG---------- 667
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
V +V +L+N Y K+G + + ++F+ + KN VSW
Sbjct: 668 ---------------------VLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSW 706
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+ MI ++Q L +E L +FN + G +P+ A + L C +G + + IH +
Sbjct: 707 NTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMF 766
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
G + + TA++D+YAK G +E + +VF + + D A+T++++ A H AI+
Sbjct: 767 CGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKH 826
Query: 309 FMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLG 344
F M G+ P+ E+MS+ Y IEP + HY C+VDL+G
Sbjct: 827 FELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMG 886
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404
R+G+L+ A +++EMP+EP + V GALL ACRV+ D LG + + L E +++
Sbjct: 887 RSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIM 946
Query: 405 LSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLL 464
LSNIY+++ W ++R M+ + + G S IE + +FV G+ ++ E+I
Sbjct: 947 LSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKK 1006
Query: 465 LFGIDKHLKSLCFFDDGNE 483
L I K +KS F E
Sbjct: 1007 LKEIRKKMKSELGFKSRTE 1025
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL +LF L + WNTMI + + A + P+ TF +L
Sbjct: 686 GDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVL 745
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
R C D V+RL G+ L C N +
Sbjct: 746 RVCEDIG-----------VVRLS--------QGIHGLIMFCG------------FNANTC 774
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+L++ YAK G++ + +F ++ ++++W+AM+ Y ++A++HF M G
Sbjct: 775 ITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYG 834
Query: 216 FRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+H L AC+ G +++GR + R IE + + ++D+ + G ++ A
Sbjct: 835 LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDA 894
Query: 275 CSVFDSMP 282
+ MP
Sbjct: 895 YGLIKEMP 902
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 188/555 (33%), Positives = 301/555 (54%), Gaps = 88/555 (15%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QI QI + L + + D FA +++ + + ++++ +F + +FI NTM++
Sbjct: 26 QILQIHAQLITTNLISDTFAASRLLDSVVSKTL-NVNYAELVFAQIHQPNSFICNTMVKC 84
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ E + P +A Y +M + L +NYT+ F+L+AC L G + + ++ G+
Sbjct: 85 YTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGD 144
Query: 123 DFVL-------------------------------NGLLHLYATCNCMDPARKLFDMSVN 151
FV+ N +L Y C M+ A+ +FD
Sbjct: 145 VFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPE 204
Query: 152 RDVISWT--------------------------------SLINGYAKSGQISIARQMFDK 179
RDV+SW+ S+I+GYAK G++ +AR++FBK
Sbjct: 205 RDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBK 264
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +KN +SWS MI+GY KEAL F M G +P+ +VGA++AC+ LGALDQG
Sbjct: 265 MLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQG 324
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIH Y+ RN + LDI++ TA++DMY KCG + A +F+SMP R+V ++ +I GL +
Sbjct: 325 RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMN 384
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
A+E F +M++E + ++ M +Y +EP ++H
Sbjct: 385 GFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEH 444
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVDLLGRAG L+ + +++ MP++P+ + G+LL ACR+H +V L + VE L E
Sbjct: 445 YGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELK 504
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
D GV+VL+SNIYA W G+ ++R+ M++ +++K G S+IEVDG V EFVSGE+++
Sbjct: 505 ADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSH 564
Query: 456 VLMEEIVLLLFGIDK 470
+L EEI L+++ + K
Sbjct: 565 ILREEIELVIWSLAK 579
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 182/491 (37%), Positives = 277/491 (56%), Gaps = 41/491 (8%)
Query: 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML 80
F V K+I C ++ D+ + LF + +++N MIR + YKQML
Sbjct: 21 FLVTKMIDVCDRNE--DMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQML 78
Query: 81 RSD---------FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
R LP+ +TF F+++ACA +G HAQ + G +S+ N L+
Sbjct: 79 REYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALID 138
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+Y C+ + A LFD R ISW +I+G+ + GQ+ AR +FD+MP + VSW+A+
Sbjct: 139 MYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAI 198
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I+GY ++ + +AL+ F MQ+ G P+ A I+ L ACA LGAL+ G+WIH + RNG+
Sbjct: 199 ISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGL 258
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+ A+I+MY KCGCI+ AC +FD M RDV +++++I GLANH + AI +F R
Sbjct: 259 LRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFER 318
Query: 312 MQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ + PN ++M + + IEP ++HYG LVDLLGRAG
Sbjct: 319 MKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAG 378
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
L A +V +MP++PD+ + G+LL++CR H ++++ +E L E D G +VLLSN
Sbjct: 379 RLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSN 438
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL-- 465
IYA +W+ V ++R+ + ++K PGCSLIEV+ V EFVSG+ + +EI LL
Sbjct: 439 IYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSKEIFWLLEL 498
Query: 466 ----FGIDKHL 472
+DKH+
Sbjct: 499 LAFHQDMDKHI 509
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 296/515 (57%), Gaps = 33/515 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++K+I + L G D K++ F + S DL + Y+L + + TTF WNT+I
Sbjct: 26 MFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLI 85
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R F+ P + ++ +ML++ P+ T+ F+++A + +G+ H +++ G E
Sbjct: 86 RAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHE 145
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
F+ N L+H+YA+C + ARK+FD +++++W ++++GYAK G +++AR++F+ M
Sbjct: 146 IDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLM 205
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEK+ VSWS++I+GYV+ ++ EA+ F M G N +V AL ACA LGAL+ GR
Sbjct: 206 PEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGR 265
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD--SMPNRDVFAYTSLISGLAN 298
+H Y+ N + L I+L T+++DMYAKCG I A +VF S+ DV + ++I GLA
Sbjct: 266 MMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLAT 325
Query: 299 HDQSASAIELFMRMQLEGVVPNESMS-----------------------EIYGIEPGVQH 335
H A+ LF M++ G+VP+E +G+ P V+H
Sbjct: 326 HGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEH 385
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y C+VD L RAG + A + + +MP++P + +LGALL+ C HG +D+ K LVE
Sbjct: 386 YACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRLVELD 445
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+H+G +V LSNIYA+ ++W+ + +R ME V+K PG S IEV GV+ F++ ++T+
Sbjct: 446 PNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHRFMAHDKTH 505
Query: 456 VLMEEIVLLLFGIDKHLKSL--------CFFDDGN 482
E+I ++L I +K + CF+D N
Sbjct: 506 GDCEQIFMMLNLIVDQMKPIEDYVHQECCFYDIMN 540
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/487 (38%), Positives = 278/487 (57%), Gaps = 27/487 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F +I F S+ +GDL Y +F + + WN+MI GF + P +A L+K+
Sbjct: 165 DLFISNSLIHFYSS--LGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKR 222
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M + PN T +L ACA L G + R G + + N +L +Y C
Sbjct: 223 MKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGS 282
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
++ AR+LFD +D++SWT++I+GYAK G AR++FD MP ++ +W+A+I+ Y Q
Sbjct: 283 LEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQN 342
Query: 199 DLFKEALEHFNYMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
KEAL F +QL +PN + L ACA LGA+D G WIH Y+ + GI+L+ +
Sbjct: 343 GKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHI 402
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
T++IDMY+KCG +E A VF S+ RDVF ++++I+GLA H +AI+LF +MQ V
Sbjct: 403 TTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKV 462
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
PN M +YG+ PG +HY C+VD+LGRAG LE A
Sbjct: 463 KPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAV 522
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+++ +MPI P V GALL ACR++G+V+L + L+E ++ G +VLLSNIYA
Sbjct: 523 ELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAG 582
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+W+ V ++R+ M+ + + K PGCS IEV+G++ EF+ G+ ++ L EI L I +K
Sbjct: 583 KWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIK 642
Query: 474 SLCFFDD 480
S + D
Sbjct: 643 STGYVSD 649
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 194/388 (50%), Gaps = 52/388 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K +KQ+ +H+ +G +DP + K+ C+ S L + ++F + + WNT+IR
Sbjct: 44 KHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIR 103
Query: 62 GFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
FA +PI+ ++ QML S PN+YTF F+++A + S L G H V++ +
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG 163
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F+ N L+H Y++ +D A +F V +D++SW S+I+G+ + G A Q+F +M
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRM 223
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+NA RPN +VG L+ACA L+ GR
Sbjct: 224 KMENA-------------------------------RPNRVTMVGVLSACAKRIDLEFGR 252
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W Y++RNGI++++IL A++DMY KCG +E A +FD M +D+ ++T++I G A
Sbjct: 253 WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVG 312
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+A +F V+P E ++ + L+ + G + A + RE+
Sbjct: 313 DYDAARRVF------DVMPREDITA----------WNALISSYQQNGKPKEALAIFRELQ 356
Query: 361 I----EPDNYVLGALLNACRVHGDVDLG 384
+ +P+ L + L AC G +DLG
Sbjct: 357 LNKNTKPNEVTLASTLAACAQLGAMDLG 384
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/517 (34%), Positives = 299/517 (57%), Gaps = 34/517 (6%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +KQI +H +G + P A +++ F + S ++ + + F + + F WNT+IR
Sbjct: 29 RHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIR 88
Query: 62 GFAEKN-------EPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQ 113
A+ + ++A + ML + PN +TF +L+ACA + + G H
Sbjct: 89 ALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGF 148
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSVNRDVISWTSLINGYAKSGQISI 172
V++LG S +FV + L+ +Y C M A LF + +V+ W +I+GY + G +
Sbjct: 149 VVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRA 208
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
+R++FD MP K+ VSW+ MI+G Q FKEA+E F+ MQL PN+ +V L A +
Sbjct: 209 SRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSR 268
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTS 291
LGA++ G+W+H + ++N IE+D +LG+A+IDMY+KCG I+ A VF+ + N+ + +++
Sbjct: 269 LGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSA 328
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIY 327
+I GLA H ++ A++ F RMQ GV P++ M I
Sbjct: 329 IIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIV 388
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
G+ P ++HYGC+VDLLGRAG LE A++++ MP++PD+ +L ALL AC++HG++++G+
Sbjct: 389 GLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERI 448
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ L+ G +V LSN++AS W GV KVR M++ ++RK PGCS IE+DGV+ E
Sbjct: 449 AKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHE 508
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
F+ + ++ E I +L + L+S+ + + +V
Sbjct: 509 FLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQV 545
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/483 (37%), Positives = 273/483 (56%), Gaps = 26/483 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQ+ +HL + + + ++ C+ + S+ +F L WNT +R
Sbjct: 30 ELKQLHAHLLKTNSPLSSLPLSRVASVCAFN--SSFSYAKLIFQLLDASEVTHWNTCLRS 87
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
FAE + P A +L+ ++ D P++YT SF+L+AC+ + G I H V +LG +S
Sbjct: 88 FAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSN 147
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
F+ N ++HLYA C + ARK+FD RDVI+W +I K G A ++F +MPE
Sbjct: 148 MFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPE 207
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+N SW++MI GY Q KEA++ F M+ G PN +V L ACA +G L GR I
Sbjct: 208 RNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI 267
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H + +R+G E +I + +IDMY KCGC+E AC +FD+M R V +++++I+GLA H ++
Sbjct: 268 HDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRA 327
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A+ LF +M GV PN SM+ YGI P ++HYGC
Sbjct: 328 EDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGC 387
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDL RAG+L+ A + + MPI P+ V GALL C+VH ++ L +E L + +
Sbjct: 388 MVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLN 447
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
+G +V+LSNIYA +W V +VR+ M D V+K PG S I V+GVV FV+G+ T+
Sbjct: 448 DGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQT 507
Query: 459 EEI 461
EEI
Sbjct: 508 EEI 510
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 184/490 (37%), Positives = 289/490 (58%), Gaps = 25/490 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ K++ +HL SG + K+I ++S L H LF + + +T+++NTM
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +A P+ A L++ MLR P+ YTF F+L+AC+ + L G H Q ++ G
Sbjct: 61 RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ FV N L+HLY + + MD AR++FD RD+ SWT+L+ YA S + AR++FD+M
Sbjct: 121 GHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEM 180
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE++ +S+SAMI YV+ + F+EAL+ F + P+ + ++ L ACA LGALD GR
Sbjct: 181 PERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGR 240
Query: 241 WIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W+++YV G +D + TA+IDM+ KCG IE A VF+ + V +T+++SGLA H
Sbjct: 241 WVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMH 300
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
IE F +M GV PN + M +G+EP V+H
Sbjct: 301 GLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEH 360
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+GC+VDLLGRAG+++ A +++ EMP EP+ + G+LLNACRV+ +V++G+ + L++
Sbjct: 361 FGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKDE 420
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ +++ L ++Y +W+ VEKV+ M++ RK PGCSLIEV G+ EFV G++++
Sbjct: 421 PWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVVGDKSH 480
Query: 456 VLMEEIVLLL 465
EI L L
Sbjct: 481 PCAVEICLNL 490
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/512 (37%), Positives = 295/512 (57%), Gaps = 31/512 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++KQ S L G + A+ +I FCS S GD+++ +LF L TF++NT+
Sbjct: 15 MAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLF 74
Query: 61 RGFAEKNE-PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ F ++ P + Y ML+ PN +TF ++RAC HA V++ G+
Sbjct: 75 KAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEE---EAKQLHAHVLKFGF 131
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ LN L+H+Y +D AR++F + +V+SWTSL++GY++ G + A ++F+
Sbjct: 132 GGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFEL 191
Query: 180 MP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALD 237
MP +KN+VSW+AMI +V+ + F+EA F M++ + L+AC +GAL+
Sbjct: 192 MPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALE 251
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
QG WIH YV++ GI LD L T IIDMY KCGC++ A VF + + V ++ +I G A
Sbjct: 252 QGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFA 311
Query: 298 NHDQSASAIELFMRMQLEGVVPNES-------------------------MSEIYGIEPG 332
H + AI LF M+ E +V +S M +++GI+P
Sbjct: 312 MHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPT 371
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+HYGC+VDLL RAG LE AKKV+ EMP+ PD VLGALL ACR+HG+++LG+E ++
Sbjct: 372 KEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVI 431
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E ++ G +V+L N+YAS +W V VR+ M+D V+K PG S+IE++GVV EFV+G
Sbjct: 432 ELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGG 491
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
R + L E I ++ + + ++ + F D + V
Sbjct: 492 RDHPLAEAIYAKIYEMLESIRVVGFVPDTDGV 523
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/498 (36%), Positives = 288/498 (57%), Gaps = 27/498 (5%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
M + KQIQ+ SG + PFA +++ F + S GD+ H YR+F+ + T WN++
Sbjct: 25 MSEFKQIQAFFITSGLSQHHPFA-SRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSI 83
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IRGF++ P + +++ +MLR P++ T+ FI +A A S L + L H ++ + G
Sbjct: 84 IRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGL 143
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
F+ N L+H+Y +C + ARK+FD + R+ +SW ++++GYAK G + ARQ+F+
Sbjct: 144 WFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFES 203
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP+++ VSWS+MI+G V+ + AL F M++ G + N +V L ACA LGAL+QG
Sbjct: 204 MPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQG 263
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLA 297
R +H Y+ N + ++L T+++DMYAKCG IE A +VF +P DV + ++I GLA
Sbjct: 264 RTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLA 323
Query: 298 NHDQSASAIELFMRMQLEGVVPNES--------------MSEIY---------GIEPGVQ 334
H ++ELF MQ+ G+VP+E + E + G+ P +
Sbjct: 324 THGLVHESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSE 383
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY C+VD+L RAG L A + +MP+EP +LGALLN C H DL + L+E
Sbjct: 384 HYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIEL 443
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
DH+G ++ LSN+YA + W+ +R ME V+K PG S +EV G + F++ ++T
Sbjct: 444 EPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVLGTLHRFIAHDKT 503
Query: 455 NVLMEEIVLLLFGIDKHL 472
+ +E+I ++L I + +
Sbjct: 504 HNDLEKIYMMLNTIVRQM 521
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/506 (38%), Positives = 279/506 (55%), Gaps = 57/506 (11%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ V G + A+ ++I S + G +++ ++LF + TF+WNTMIRG A+ P+
Sbjct: 1 MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130
A +LY QM P+ +TF F+L+AC + +G H +V RLG+ES FV N L+
Sbjct: 61 NAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI 120
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA 190
+ +A C + AR LFD S RDV++W++L GYA+ G++ +ARQ+FD+MP K+ VSW+
Sbjct: 121 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNV 180
Query: 191 MINGYVQ-------VDLFKE------------------------ALEHFNYMQLCGFRPN 219
MI GY + LF E ALE F M+ G P+
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGI-ELDIILGTAIIDMYAKCGCIETACSVF 278
++ L+AC LG LD G+ IH + G +L ++LG A+IDMYAKCG I A VF
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVF 300
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---------------- 322
M +DV + S++ GLA H + +I LF M+ + P+E
Sbjct: 301 QGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVE 360
Query: 323 --------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
M + Y IEP ++HYGC+VDLLGRAG+L A + M IEP+ V LL A
Sbjct: 361 EGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGA 420
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVP 434
CR+HG+V+LG+ L++ D G +VLLSNIYAS +W+GVEKVR+ M+D+ VRK
Sbjct: 421 CRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEA 480
Query: 435 GCSLIEVDG-VVCEFVSGERTNVLME 459
GCSLIE D + F+ + N+ +E
Sbjct: 481 GCSLIEGDNKALMHFLFDSKPNLFIE 506
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 183/468 (39%), Positives = 277/468 (59%), Gaps = 28/468 (5%)
Query: 31 SASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90
S + +G L + LF Q + F W +I G A + +A Y QML PN +T
Sbjct: 18 SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFT 77
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
FS IL+ C + G H+Q ++LG++S +V GLL +YA + A++LFD
Sbjct: 78 FSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ ++S T+++ YAK G++ AR +FD M E++ V W+ MI+GY Q + EAL F
Sbjct: 134 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 193
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M +PN ++ L+AC LGAL+ GRW+H+Y++ NGI+ ++ +GTA++DMY+KCG
Sbjct: 194 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
+E A VFD + ++DV A+ S+I G A S A++LF M G+ P
Sbjct: 254 LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA 313
Query: 321 --------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
M + YGIEP ++HYGC+V+LLGRAG +E A ++V+ M IEPD
Sbjct: 314 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 373
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ G LL ACR+HG + LG++ VE LV+++L + G ++LLSNIYA+ W+GV ++R M+
Sbjct: 374 LWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMK 433
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
D+ V+K PGCS IEV+ V EF++G + +EI ++L I+ LKS
Sbjct: 434 DSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKS 481
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 116/248 (46%), Gaps = 24/248 (9%)
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
L YA G++ + +F + + W+A+I+G+ L ++AL + M G P
Sbjct: 14 KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEP 73
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
N L C ++ G+ +H+ + G + D+ + T ++D+YA+ G + +A +F
Sbjct: 74 NAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC 338
D+MP + + + T++++ A H + +A LF + M E G+ +
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLF-----------DGMEERDGV-----CWNV 173
Query: 339 LVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
++D + GM A + R M +P+ + ++L+AC G ++ G+ V S +E +
Sbjct: 174 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR-WVHSYIENN 232
Query: 396 LDHEGVHV 403
VHV
Sbjct: 233 GIQFNVHV 240
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/531 (36%), Positives = 302/531 (56%), Gaps = 60/531 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQY-RTTFIWNTM 59
K + Q+ + L + + + +A G+++ F S ++G L++ +LF + R +F++ TM
Sbjct: 45 KDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTM 104
Query: 60 IRGFAEKNEPIKAFALYKQML--RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
I+ +A P +AFA Y +ML + PN++TF+++ AC+ + +F G HAQ+I+
Sbjct: 105 IKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKF 164
Query: 118 GWESYDFVLNGLLHLYA----------------------TCNCM----------DPARKL 145
+E N LL Y + NC+ D AR+L
Sbjct: 165 PFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRL 224
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
FD RDV+SWT ++ GYA +G +S A +FD+MP++N VSWSA+I GY+Q+ + +AL
Sbjct: 225 FDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKAL 284
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
E F MQ+ + + + L+ACA LGALDQGRW+H Y+D++GI++D L TA+IDMY
Sbjct: 285 ELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMY 344
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---- 321
+KCG I+ A VF ++ VF ++S+I GLA H AIELF +M G+ P+E
Sbjct: 345 SKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYI 404
Query: 322 --------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
M E +P +QHYGC+VDLLGRAG+L A +VV MP+
Sbjct: 405 NILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPV 464
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
+ D + ALL+AC++H +V+LG++ L++ ++ +VL SN+YA+ +W+ K+
Sbjct: 465 KADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKL 524
Query: 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
RR M+ ++K PGCS IE++G V EFVS + ++ + I LL + H+
Sbjct: 525 RREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYELLHILTNHM 575
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 180/466 (38%), Positives = 266/466 (57%), Gaps = 36/466 (7%)
Query: 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML 80
+ +I+ C+ G +H R+F + + N MI+ +A+ + A +Y +ML
Sbjct: 43 YVATQIVHVCNGH--GRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRML 100
Query: 81 RSDFLPNN---------YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
R P++ +T+ F+L+AC + +G HA V R G ES+ V N L+
Sbjct: 101 RCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIE 160
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+Y C + ARK+FD +D +SW +LI+ +A+ GQ+ AR++F MP+K VSW+A+
Sbjct: 161 MYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTAL 220
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
++GY V F A+E F MQ+ GF P+ IV L ACA LGAL+ GRWI+AY +++G+
Sbjct: 221 VSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGM 280
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
I + A+++MYAKCGCIE A +F M +DV ++++ I GLA H ++ A++LF
Sbjct: 281 LGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEV 340
Query: 312 MQLEG-VVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRA 346
M EG V+PN + M E YG+EP V+HYGC+VDLLGR+
Sbjct: 341 MDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRS 400
Query: 347 GMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406
G ++ A + MPI PD + G+LL+ACR H DVD E LVE + G V+L+
Sbjct: 401 GRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLA 460
Query: 407 NIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
N+YA+ +W V R+ + RK PGCS+IEVD VV EFV+GE
Sbjct: 461 NVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGE 506
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 179/517 (34%), Positives = 290/517 (56%), Gaps = 45/517 (8%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +KQ+ + +G + DP ++I FC+ S D+ + +F + F WNT++R
Sbjct: 33 RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILR 91
Query: 62 GFAEKNEP---IKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
AE N+ +A L+ ML PN +TF +L+ACA S L G H +++
Sbjct: 92 VLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLF-----------DMSVNR-----DVISWTSLI 161
G+ +FV++ L+ +Y C M+ A LF M +++ +V+ W +I
Sbjct: 152 GFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMI 211
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
+G + G I A+ +FD+MP+++ VSW+ MI+GY Q F EA+ F MQ PN+
Sbjct: 212 DGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYV 271
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
+V L A A +GAL+ G+WIH Y +N IE+D +LG+A++DMY+KCG I+ A VF+++
Sbjct: 272 TLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETL 331
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------------- 321
P R+ ++++I A H ++ AI F M GV PN+
Sbjct: 332 PKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGR 391
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
M ++ G++P ++HYGC+VDLLGRAG LE A++++R MPIEPD+ + ALL AC++
Sbjct: 392 SFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKM 451
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H ++ +G+ E+L+E + G +V LSN+YAS W V +VR M+ ++RK PGCS
Sbjct: 452 HKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCS 511
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
IE+ G++ EF+ + ++ +EI +L + L+S
Sbjct: 512 WIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRS 548
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 181/464 (39%), Positives = 271/464 (58%), Gaps = 35/464 (7%)
Query: 53 TFIWNTMIRGFAEKNEPIKAF----ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
+F+WN +IR AF +LY +M LP+ +TF F+L++ G
Sbjct: 24 SFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTPH---RGR 80
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HAQ++ LG + FV L+++Y++C AR+ FD D+ SW ++I+ AK+G
Sbjct: 81 QLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAG 140
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL---CGFRPNHAGIVG 225
I IAR++FD+MPEKN +SWS MI+GYV +K AL F +Q RPN +
Sbjct: 141 MIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSS 200
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNR 284
L+ACA LGAL G+W+HAY+D+ G+++D++LGT++IDMYAKCG IE A +FD++ P +
Sbjct: 201 VLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEK 260
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ 320
DV A++++I+ + H S +ELF RM +GV PN
Sbjct: 261 DVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYF 320
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
+ M YG+ P +QHYGC+VDL RAG +E A VV+ MP+EPD + GALLN R+HGD
Sbjct: 321 KRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGD 380
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
V+ + + L+E + +VLLSN+YA +W V +R ME ++K+PGCSL+E
Sbjct: 381 VETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVE 440
Query: 441 VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
VDGV+ EF +G+ ++ + + ++L I K L+ + + EV
Sbjct: 441 VDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEV 484
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 117/264 (44%), Gaps = 39/264 (14%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR---SDFLPNNYTFSFILRACA 99
+LF + + W+ MI G+ E A +L++ + S PN +T S +L ACA
Sbjct: 147 KLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACA 206
Query: 100 DTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFD-MSVNRDVISW 157
L G HA + + G + D VL L+ +YA C ++ A+ +FD + +DV++W
Sbjct: 207 RLGALQHGKWVHAYIDKTGMK-IDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAW 265
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+++I ++ G L +E LE F M G R
Sbjct: 266 SAMITAFSMHG-------------------------------LSEECLELFARMVNDGVR 294
Query: 218 PNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
PN V L AC G + +G + ++ G+ I ++D+Y++ G IE A +
Sbjct: 295 PNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWN 354
Query: 277 VFDSMP-NRDVFAYTSLISGLANH 299
V SMP DV + +L++G H
Sbjct: 355 VVKSMPMEPDVMIWGALLNGARIH 378
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/437 (40%), Positives = 270/437 (61%), Gaps = 27/437 (6%)
Query: 75 LYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
++ M+R S FLPN YTF F+ +AC + + G I++G ES FV N ++ +Y
Sbjct: 18 IFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMY 77
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
A +D AR++FD S+++D+ SW +I GY SG+I A++MFD+M E++ VSW+ +I
Sbjct: 78 ANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIA 137
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
GYVQV FKEAL+ F+ M G PN + AL ACA L ALDQGRWIH Y+D++ I++
Sbjct: 138 GYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKM 197
Query: 254 DIILGTAIIDMYAKCGCIETACSVF--DSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+ L +++DMYAKCG I+ A VF + V+ + ++I G A H +S AI+LF +
Sbjct: 198 NERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQ 257
Query: 312 MQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAG 347
M++E V PN +SM+ YGIEP ++HYGC+VDLLGR+G
Sbjct: 258 MKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSG 317
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
+L+ A++ V MP+ PD + GALL ACR+H D++ G+ + + E DH G HVLL+N
Sbjct: 318 LLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLAN 377
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
+Y+++ QW+ + VR+ +E + +K PGCS IE++GV +F+ G+R++ +++ L L
Sbjct: 378 LYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDE 437
Query: 468 IDKHLKSLCFFDDGNEV 484
+ LK+ + + EV
Sbjct: 438 MTTKLKNAGYVPEFGEV 454
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 137/333 (41%), Gaps = 54/333 (16%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ +F + R W T+I G+ + +A L+ +ML++ PN +T + L
Sbjct: 112 GEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASAL 171
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF--DMSVNRD 153
ACA+ L G H + + + + +L LL +YA C +D A K+F + +
Sbjct: 172 AACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK 231
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V W ++I GYA G+ KEA++ F M++
Sbjct: 232 VWPWNAMIGGYAMHGKS-------------------------------KEAIDLFEQMKV 260
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
PN V L AC+ +++GR + + GIE +I ++D+ + G ++
Sbjct: 261 EKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLK 320
Query: 273 TACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
A +MP D + +L+ H IE R Q G + E S+
Sbjct: 321 EAEETVFNMPMAPDATIWGALLGACRIHKD----IE---RGQRIGKIIKELDSD------ 367
Query: 332 GVQHYGC---LVDLLGRAGMLEAAKKVVREMPI 361
H GC L +L +G + AK V +++ +
Sbjct: 368 ---HIGCHVLLANLYSASGQWDEAKAVRQKIEV 397
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/495 (35%), Positives = 281/495 (56%), Gaps = 29/495 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+K+I +H+ F V K++ C ++G +S+ LF L + F +N +I
Sbjct: 23 ITQLKKIHAHVVKLSLSQSNFLVTKMLDSCD--NLGHVSYATLLFKQLLHPNIFTYNAII 80
Query: 61 RGFAEKNEPIKAFALYKQMLR---SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
R +A A +++ QML + P+ +TF F++++C C +G+ H V +
Sbjct: 81 RTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKF 140
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G + + N L+ +Y + A K+F+ +RDVISW SLI GY K GQ++ AR++F
Sbjct: 141 GADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELF 200
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D MP + VSW+ MI GY ++ + +AL+ F MQ+ G P+ I+ L ACA LGAL+
Sbjct: 201 DDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALE 260
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WIH Y D+NG + A+I+MYAKCGCI+ A ++FD + +DV +++++I GLA
Sbjct: 261 VGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLA 320
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
NH + AI+LF M V PNE MS Y IEP +
Sbjct: 321 NHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEI 380
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCL+DLLGR+G L A + +MPI+PD+ + +LL++CR+H ++ + V+ L+E
Sbjct: 381 EHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLME 440
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ G +VLL+N+YA +W V +R+ + + ++K PG S IEV+ VV EFVS +
Sbjct: 441 LEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEFVSSDD 500
Query: 454 TNVLMEEIVLLLFGI 468
+ +E+ +L G+
Sbjct: 501 SKPFSQEVFWILEGL 515
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/517 (34%), Positives = 289/517 (55%), Gaps = 45/517 (8%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +KQ+ + +G + DP ++I FC+ S D+ + +F + F WNT++R
Sbjct: 33 RDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILR 91
Query: 62 GFAEKNEP---IKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
AE N+ +A L+ ML PN +TF +L+ACA S L G H +++
Sbjct: 92 ILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLF-----------DMSVNR-----DVISWTSLI 161
G+ +FV++ L+ +Y C M+ A LF M +++ +V+ W +I
Sbjct: 152 GFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMI 211
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
+G + G I A+ +FD+MP ++ VSW+ MI+GY Q F EA+ F MQ PN+
Sbjct: 212 DGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYV 271
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
+V L A A +GAL+ G+WIH Y +N +E+D +LG+A++DMY+KCG I+ A VF+++
Sbjct: 272 TLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETL 331
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------------- 321
P R+ ++++I A H ++ AI F M GV PN+
Sbjct: 332 PKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGR 391
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
M ++ G++P ++HYGC+VDLLGRAG LE A++++R MPIEPD+ + ALL AC++
Sbjct: 392 SFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKM 451
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H ++ +G+ E+L+E + G +V LSN+YAS W V +VR M+ ++RK PGCS
Sbjct: 452 HKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCS 511
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
IE+ G++ EF+ + ++ +EI +L + L+S
Sbjct: 512 WIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRS 548
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 276/486 (56%), Gaps = 27/486 (5%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I + + + G F V K++ FC I D+ + RLF + F++N++IR +
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDK--IEDMDYATRLFNQVSNPNVFLYNSIIRAYT 84
Query: 65 EKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+ +YKQ+LR F LP+ +TF F+ ++CA ++G H + + G +
Sbjct: 85 HNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHV 144
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
N L+ +Y + + A K+FD RDVISW SL++GYA+ GQ+ A+ +F M +K
Sbjct: 145 VTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDK 204
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
VSW+AMI+GY + + EA++ F MQL G P+ ++ L +CA LG+L+ G+WIH
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIH 264
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y +R G + A+I+MY+KCG I A +F M +DV +++++ISG A H +
Sbjct: 265 LYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAH 324
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
AIE F MQ V PN + M + Y IEP ++HYGCL
Sbjct: 325 GAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
+D+L RAG LE A ++ + MP++PD+ + G+LL++CR G++D+ ++ LVE +
Sbjct: 385 IDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDM 444
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +VLL+NIYA +W V ++R+ + + ++K PG SLIEV+ +V EFVSG+ +
Sbjct: 445 GNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWT 504
Query: 460 EIVLLL 465
EI ++L
Sbjct: 505 EISIVL 510
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/486 (34%), Positives = 275/486 (56%), Gaps = 27/486 (5%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I + + V G F V K++ C +GD+ + RLF + F++N++IR +
Sbjct: 27 KKIHACIIVHGLSQSSFMVTKMVDLCDK--LGDMDYATRLFNQVSNPNVFLYNSIIRAYT 84
Query: 65 EKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+ +YKQ+LR P+ +TF F+ ++CA ++G H + + G +
Sbjct: 85 HNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHV 144
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
N L+ +Y + + A K+FD RDVISW SL++GYA+ GQ+ A+ +F M +K
Sbjct: 145 VTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDK 204
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
VSW+AMI+GY + + EA++ F MQL G P+ ++ L +CA LG+L+ G+WIH
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIH 264
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y +R G+ + A+I+MY+KCG + A +F+ +DV +++++ISG A H +
Sbjct: 265 MYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAH 324
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
A E F+ MQ V PN + M + Y IEP ++HYGCL
Sbjct: 325 RAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCL 384
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
+D+L RAG LE A ++ + MP++PD+ + G+LL++CR G++D+ ++ LVE D
Sbjct: 385 IDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDM 444
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +VLL+NIYA +W V ++R+ + ++K PGCSLIEV+ +V EFV+G+ +
Sbjct: 445 GNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNIVQEFVAGDNSKPFWT 504
Query: 460 EIVLLL 465
EI L+L
Sbjct: 505 EISLVL 510
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 178/497 (35%), Positives = 279/497 (56%), Gaps = 72/497 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++++QI + +G + D K++ FC++ + G L++ +F + TF+WNTMI
Sbjct: 31 MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ EP +A LY ML N YTF F+L+AC+ S L HA +I++G+
Sbjct: 91 RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFG 150
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S + N SL+N Y+KSG I AR +FD++
Sbjct: 151 SEIYTTN-------------------------------SLLNVYSKSGDIKSARLLFDQV 179
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+++ EAL F+ MQ G + ++ +V L ACA LG LDQG+
Sbjct: 180 DQRDT-----------------EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 222
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAY+ ++ IE+D ILG +IDMYAKCG +E A VF M + V +T++ISG A H
Sbjct: 223 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 282
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+E FM+MQ GV PN ESM I+G +P ++HY
Sbjct: 283 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 342
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG+L+ A++++ MP++P+ + GALLNAC +HG+++LGK+ + L++
Sbjct: 343 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 402
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
H G ++ L++I+A+ +WN +VRR M++ V K+PGCS+I V+G EF++G+ ++
Sbjct: 403 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 462
Query: 457 LMEEIVLLLFGIDKHLK 473
++EI +L I + L+
Sbjct: 463 QIKEIDHMLEQIVERLR 479
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 50/289 (17%)
Query: 130 LHLYATCNCMDPARKLFDMSVNR----DVISWTSLIN--GYAKSGQISIARQMFDKMPEK 183
LHL C+ M+ R++ + D I + L+ SG ++ AR +FD++
Sbjct: 22 LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
N W+ MI GY +EAL +++M N L AC+ + AL++ + IH
Sbjct: 82 NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIH 141
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
A++ + G +I +++++Y+K G I++A +FD + RD
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT----------------- 184
Query: 304 SAIELFMRMQLEGVVPN--------ESMSEIYGIEPG--VQHY------------GC-LV 340
A+ LF RMQ G+ + ++ +++ ++ G + Y GC L+
Sbjct: 185 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 244
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
D+ + G LE A +V R+M E V A+++ +HG G+E +E
Sbjct: 245 DMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIHGR---GREALE 289
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/517 (34%), Positives = 295/517 (57%), Gaps = 28/517 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQ+ + + G D + KI+ F + S+ GD+++ YR+F L T F WNT+IRG
Sbjct: 29 ELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRG 88
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ PI++ +++ +MLR P+ T+ F+++A A G+ HA +I+ G ES
Sbjct: 89 YSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESD 148
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
F+ N L+H+YA C A+K+FD ++V+SW S+++GYAK G++ +A++ F+ M E
Sbjct: 149 RFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSE 208
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ SWS++I+GYV+ + EA+ F MQ G + N +V ACA +GAL++GR I
Sbjct: 209 KDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMI 268
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD--SMPNRDVFAYTSLISGLANHD 300
+ Y+ NG+ L ++L T+++DMYAKCG IE A +F S DV + ++I GLA H
Sbjct: 269 YKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHG 328
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+++LF MQ+ G+ P+ ES+S+ G+ P +HY
Sbjct: 329 LVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLSKC-GMTPTSEHY 387
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+VD+L RAG L A + + +MP EP +LGALL+ C H ++ L + L+E
Sbjct: 388 ACMVDVLARAGQLTTAYQFICQMPTEPTASMLGALLSGCINHRNLALAEIVGRKLIELEP 447
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+H+G ++ LSN+YA ++W+ +R ME V+K PG S +E+ GV+ F++ ++T+
Sbjct: 448 NHDGRYIGLSNMYAVDKRWDDARSMREAMERRGVKKSPGFSFVEISGVLHRFIAHDKTHP 507
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLD 493
EE +L + +K C +D E + S+ D
Sbjct: 508 DSEETYFMLNFVVYQMKLSC-HEDNQERSLNDTSMED 543
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 177/466 (37%), Positives = 278/466 (59%), Gaps = 34/466 (7%)
Query: 53 TFIWNTMIRGFAEKNEPIK---AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
+F+WN +IR P + ++Y +M P+ +TF F+L + + L +G
Sbjct: 23 SFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQR 82
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HAQ++ G + FV LL++Y++C + A ++FD SV++D+ +W S++N YAK+G
Sbjct: 83 THAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGL 142
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-----FRPNHAGIV 224
I+ AR++FD+MPE+N +SWS +INGYV +KEAL+ F MQL PN +
Sbjct: 143 INHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMS 202
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PN 283
L+AC LGAL+QG+W+H+Y+D+ G+E+DI+LGTA+IDMYAKCG +E A VFD++
Sbjct: 203 TVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSK 262
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV-PN---------------------- 320
+DV AY+++I LA + + ++F M + PN
Sbjct: 263 KDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKS 322
Query: 321 --ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
+ M+E +GI P +QHYGC+VDL GR+G+++ A+ + MP+EPD + G+LL+ R+
Sbjct: 323 YFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 382
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
GD+ + ++ L+E + G +VLLSN+YA T +W V+++R ME ++KVPGCS
Sbjct: 383 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSY 442
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EV+GVV EFV G+ + E I +L I + L+ + D EV
Sbjct: 443 VEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEV 488
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 40/269 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-----FLPNNYT 90
G ++H +LF + R W+ +I G+ + +A L+++M PN +T
Sbjct: 141 GLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFT 200
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFD-M 148
S +L AC L G H+ + + G E D VL L+ +YA C ++ A+++FD +
Sbjct: 201 MSTVLSACGRLGALEQGKWVHSYIDKYGVE-IDIVLGTALIDMYAKCGSLERAKRVFDAL 259
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+DV +++++I A G Q+F +M N ++
Sbjct: 260 GSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNIN--------------------- 298
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAK 267
PN VG L AC G +++G+ + + GI I ++D+Y +
Sbjct: 299 ---------PNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGR 349
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISG 295
G I+ A S SMP DV + SL+SG
Sbjct: 350 SGLIKEAESFIASMPMEPDVLIWGSLLSG 378
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 182/504 (36%), Positives = 296/504 (58%), Gaps = 33/504 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q ++++ + +G D + +I ++ ++ + +LF + R + WN MI
Sbjct: 213 VRQGEKVRGFIVKTGMDLDNYVYNSLIDM--YYELSNVENAKKLFDEMTTRDSVSWNVMI 270
Query: 61 RGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIR-LG 118
G+ A +++M + + P+ T L AC L +G H V + LG
Sbjct: 271 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELG 330
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ + + N LL +YA C C++ AR +FD ++VI WTS+I+GY G + AR +FD
Sbjct: 331 FTTR--IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFD 388
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
K P ++ V W+AMINGYVQ F +A+ F MQ+ +P+ +V LT CA LGAL+Q
Sbjct: 389 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQ 448
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+WIH Y+D N I +D+++GTA+I+MY+KCGC++ + +F + ++D ++TS+I GLA
Sbjct: 449 GKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 508
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
+ +++ A+ LF M+ G P++ SM +++ IEP V+
Sbjct: 509 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVE 568
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL---GALLNACRVHGDVDLGKETVESL 391
HYGC++DLLGRAG+L+ A+++++E+PIE V+ GALL+ACR+H +VD+G+ + L
Sbjct: 569 HYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 628
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+H LL+NIYAS ++W +KVRR M++ V+K+PGCSLIEVDG+V EF+ G
Sbjct: 629 ENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVG 688
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSL 475
+ ++ M EI +L + L L
Sbjct: 689 DPSHPEMIEICSMLNRVTGQLLGL 712
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 186/389 (47%), Gaps = 52/389 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQIQS + G D + K++ FC+ S +G+L + ++F +Q + F++N M+
Sbjct: 110 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 169
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ +A++ K L++Q+ P+ +T+ F+L+A + G +++ G +
Sbjct: 170 KIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 229
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
++V N L+ +Y + ++ A+KLFD RD +SW +I+G
Sbjct: 230 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG----------------- 272
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQG 239
YV+ F++A+ F MQ G +P+ A +V L+AC L L+ G
Sbjct: 273 --------------YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELG 318
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
IH YV R + + A++DMYAKCGC+ A ++FD M ++V +TS+ISG N
Sbjct: 319 DEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINC 377
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
A +LF + + VV +M Y VQ + + A + REM
Sbjct: 378 GDLREARDLFDKSPVRDVVLWTAMINGY-----VQFH-----------HFDDAVALFREM 421
Query: 360 PIE---PDNYVLGALLNACRVHGDVDLGK 385
I+ PD + + LL C G ++ GK
Sbjct: 422 QIQKIKPDKFTVVTLLTGCAQLGALEQGK 450
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 29/257 (11%)
Query: 135 TCNCMDPARKL------FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
C MD +++ + +RD I+ + G + A ++F+ + + + +
Sbjct: 106 NCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVY 165
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+ M+ Y + + ++ L F ++ G P+ L A L + QG + ++ +
Sbjct: 166 NVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVK 225
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
G++LD + ++IDMY + +E A +FD M RD ++ +ISG + AI
Sbjct: 226 TGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINT 285
Query: 309 FMRMQLEG-VVPNESM--------SEIYGIEPG--VQHY------------GCLVDLLGR 345
F MQ EG P+E+ + + +E G + +Y L+D+ +
Sbjct: 286 FREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAK 345
Query: 346 AGMLEAAKKVVREMPIE 362
G L A+ + EM ++
Sbjct: 346 CGCLNIARNIFDEMSMK 362
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 182/504 (36%), Positives = 296/504 (58%), Gaps = 33/504 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q ++++ + +G D + +I ++ ++ + +LF + R + WN MI
Sbjct: 259 VRQGEKVRGFIVKTGMDLDNYVYNSLIDM--YYELSNVENAKKLFDEMTTRDSVSWNVMI 316
Query: 61 RGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIR-LG 118
G+ A +++M + + P+ T L AC L +G H V + LG
Sbjct: 317 SGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELG 376
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ + + N LL +YA C C++ AR +FD ++VI WTS+I+GY G + AR +FD
Sbjct: 377 FTTR--IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFD 434
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
K P ++ V W+AMINGYVQ F +A+ F MQ+ +P+ +V LT CA LGAL+Q
Sbjct: 435 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQ 494
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+WIH Y+D N I +D+++GTA+I+MY+KCGC++ + +F + ++D ++TS+I GLA
Sbjct: 495 GKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 554
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
+ +++ A+ LF M+ G P++ SM +++ IEP V+
Sbjct: 555 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVE 614
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL---GALLNACRVHGDVDLGKETVESL 391
HYGC++DLLGRAG+L+ A+++++E+PIE V+ GALL+ACR+H +VD+G+ + L
Sbjct: 615 HYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 674
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+H LL+NIYAS ++W +KVRR M++ V+K+PGCSLIEVDG+V EF+ G
Sbjct: 675 ENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVG 734
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSL 475
+ ++ M EI +L + L L
Sbjct: 735 DPSHPEMMEICSMLNRVTGQLLGL 758
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 186/389 (47%), Gaps = 52/389 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQIQS + G D + K++ FC+ S +G+L + ++F +Q + F++N M+
Sbjct: 156 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 215
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ +A++ K L++Q+ P+ +T+ F+L+A + G +++ G +
Sbjct: 216 KMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 275
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
++V N L+ +Y + ++ A+KLFD RD +SW +I+G
Sbjct: 276 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG----------------- 318
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQG 239
YV+ F++A+ F MQ G +P+ A +V L+AC L L+ G
Sbjct: 319 --------------YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELG 364
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
IH YV R + + A++DMYAKCGC+ A ++FD M ++V +TS+ISG N
Sbjct: 365 DEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINC 423
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
A +LF + + VV +M Y VQ + + A + REM
Sbjct: 424 GDLREARDLFDKSPVRDVVLWTAMINGY-----VQFH-----------HFDDAVALFREM 467
Query: 360 PIE---PDNYVLGALLNACRVHGDVDLGK 385
I+ PD + + LL C G ++ GK
Sbjct: 468 QIQRVKPDKFTVVTLLTGCAQLGALEQGK 496
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 135/331 (40%), Gaps = 41/331 (12%)
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYT--FSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + N I F +K S LP + FI R + + L L+ +++ +
Sbjct: 88 YTKMNRDIWIFQFFKHSQSSHMLPLSIIRRVQFISRHFSSSPHLVPVLLRISKLTK---- 143
Query: 121 SYDFVLNGLLHLYATCNCMDPARKL------FDMSVNRDVISWTSLINGYAKSGQISIAR 174
+ C MD +++ + +RD I+ + G + A
Sbjct: 144 ------KSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAE 197
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++F+ + + + ++ M+ Y + + ++ L F ++ G P+ L A L
Sbjct: 198 KIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLR 257
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+ QG + ++ + G++LD + ++IDMY + +E A +FD M RD ++ +IS
Sbjct: 258 DVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMIS 317
Query: 295 GLANHDQSASAIELFMRMQLEG-VVPNESM--------SEIYGIEPG--VQHY------- 336
G + AI F MQ EG P+E+ + + +E G + +Y
Sbjct: 318 GYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGF 377
Query: 337 -----GCLVDLLGRAGMLEAAKKVVREMPIE 362
L+D+ + G L A+ + EM ++
Sbjct: 378 TTRIDNALLDMYAKCGCLNIARNIFDEMSMK 408
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/490 (37%), Positives = 274/490 (55%), Gaps = 30/490 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ + + +G + FA+ +++ FCS G L++ R+F + + T I NT+I
Sbjct: 18 VNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNTII 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F F ++ +ML + P+NYT ++L+ACA +G + H +LG
Sbjct: 78 KTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLV 137
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N L+ +Y+ C + AR +FD +SW+ +I+GYAK G + AR FD+
Sbjct: 138 FDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEA 197
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEK+ W AMI+GYVQ FKE L F +QL P+ + V L+ACA LGALD G
Sbjct: 198 PEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGI 257
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y++R + L I L T+++DMYAKCG +E A +FDSMP RD+ + ++ISGLA H
Sbjct: 258 WIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHG 317
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
ASA+++F M+ G+ P+ + MS +Y IEP +HY
Sbjct: 318 DGASALKMFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHY 377
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPI-----EPDNYVLGALLNACRVHGDVDLGKETVESL 391
GCLVDLL RAG+ A ++R + + A L+AC HG L + + L
Sbjct: 378 GCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRL 437
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+ R +H GV+VLLSN+YA++ + + +VR M + V K PGCS +E+DGVV EF++G
Sbjct: 438 L-RLENHSGVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVEIDGVVSEFIAG 496
Query: 452 ERTNVLMEEI 461
E T+ MEEI
Sbjct: 497 EETHPQMEEI 506
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 170/470 (36%), Positives = 275/470 (58%), Gaps = 40/470 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +KQ+ + + + + DP A +++ F + SD DL + ++F + F +NT+I
Sbjct: 1 MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 60
Query: 61 RGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R +E N+P A ++ +M+ PN +TF + +AC L G H ++ G
Sbjct: 61 RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 120
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLF---------------DMSVNRDVISWTSLINGY 164
+S +FV++ ++ +Y +C M+ A +LF V+ DV+ W +I+GY
Sbjct: 121 DSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGY 180
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
+ G++ +AR +FD+MP+++ VSW+ MI GY Q FKEA+E F MQ+ PN+ +V
Sbjct: 181 VRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLV 240
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L A + LGAL+ G+W+H Y RN I +D +LG+A+IDMYAKCG IE A VF+ +P R
Sbjct: 241 SVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKR 300
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ 320
+V ++++I+GLA H ++ ++ F M+ GV+P+
Sbjct: 301 NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFF 360
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
+ M + G+EP ++HYGC+VDLLGRAG+LE +++++ MPI+PD+ + ALL AC++HG+
Sbjct: 361 DHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGN 420
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
V++GK E L+E + G +V LSNIYAS W GV KVR M++ +V
Sbjct: 421 VEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDV 470
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 170/450 (37%), Positives = 266/450 (59%), Gaps = 24/450 (5%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+WN +I G + + M+R+ + T+ +L AC L +G+ H +V
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+ G V N L+ +YA C MD A LF+ R + SWTS+I+G +SGQ+ AR
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRAR 247
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+FD MPE++ ++W+AMI+GYVQV F++ALE F YMQ+C R + +V +TACA LG
Sbjct: 248 DLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLG 307
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
AL+ G W Y+ R GI++D+ +G A+IDMY+KCG IE A VF M NRD F +T++I
Sbjct: 308 ALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIIL 367
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIE 330
GLA + + AI++F RM P+E SM+E Y I
Sbjct: 368 GLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNIS 427
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P V HYGCL+D+LGRAG L+ A + +MP++P++ + G LL +CRV+G+ ++G+ E
Sbjct: 428 PTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAER 487
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
L+E D+ ++LLSN+YA + +W V ++R+ + + ++K PGCS+IE++G++ EFV+
Sbjct: 488 LLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVA 547
Query: 451 GERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
+R++ + +EI L + L++ + D
Sbjct: 548 ADRSHPMNKEIYSKLENVLTDLRNAGYVPD 577
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 59/327 (18%)
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI-----CHAQVIRLGWESYDFV 125
+A A Y +ML P+ YTF +L+A A V HA V++ G ES
Sbjct: 34 EAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHA 93
Query: 126 LNGLLHLYATCNCMDPARKLFDM----SVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ L+ +YA AR + + + + W +LI+G+ +SG+ ++ F M
Sbjct: 94 ASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMV 153
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+A++ + YV V L+AC L G
Sbjct: 154 RASAMATAVT---YVSV----------------------------LSACGKGKDLLLGMQ 182
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H V +G+ D + A++DMYA+CG ++ A +F+ M R + ++TS+ISGL Q
Sbjct: 183 VHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQ 242
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
A +LF M + + ++D + G A + R M I
Sbjct: 243 VDRARDLFDHMPERDTIA----------------WTAMIDGYVQVGRFRDALETFRYMQI 286
Query: 362 ---EPDNYVLGALLNACRVHGDVDLGK 385
D + + +++ AC G ++ G+
Sbjct: 287 CKVRADEFTMVSVVTACAQLGALETGE 313
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 179/539 (33%), Positives = 296/539 (54%), Gaps = 57/539 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ + Q+ + SG D + G ++ + + ++F + FIWN +I
Sbjct: 46 LQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVI 105
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G E N+ KA Y +M+ D PN +T+ + +AC+ + G H V++ G
Sbjct: 106 KGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIG 164
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY---------------- 164
S + + +H+YA+ ++ ARK+F S DV+ W ++I+GY
Sbjct: 165 SDVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQM 223
Query: 165 ---------------AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
AK G + AR++FD+M E++ +SWS+M++GY+ +KEALE F
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQ 283
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
MQ RP + L AC+ +GA+DQGRW+HAY+ RN I+LD +LGTA++DMYAKCG
Sbjct: 284 QMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG 343
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------- 320
++ VF+ M R++F + ++I GLA H ++ A+ELF ++Q + PN
Sbjct: 344 RLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLT 403
Query: 321 ---------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
++M E YG++P ++HYGC+VDLLGR+G+ A+ ++ MP++P+
Sbjct: 404 ACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
V GALL ACR+HG+ DL + + L+E + G +VLLSNIYA +++ V K+R+ M
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLM 523
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+D ++ VPG S+++++G V EF G+ ++ M+EI L I + L+ D ++V
Sbjct: 524 KDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQV 582
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/491 (36%), Positives = 281/491 (57%), Gaps = 27/491 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F + +I F + G+L GYR+FV + R WN+MI F + P +A L+++
Sbjct: 170 DVFILNSLIHF--YAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQE 227
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M + PN T +L ACA S G H+ + R + N +L +Y C
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGS 287
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
++ A++LFD +D++SWT+++ GYAK G+ A+ +FD MP ++ +W+A+I+ Y Q
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQC 347
Query: 199 DLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
KEALE F+ +QL +P+ +V L+ACA LGA+D G WIH Y+ + G++L+ L
Sbjct: 348 GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHL 407
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
T++IDMY KCG ++ A VF S+ +DVF ++++I+GLA H AI LF +MQ + V
Sbjct: 408 TTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKV 467
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
PN M +YG+ PGV+HY C+VD+LGRAG+LE A
Sbjct: 468 KPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAV 527
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+++ +MP+ P V GALL AC +H +V L ++ L+E + G +VLLSNIYA
Sbjct: 528 ELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAG 587
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+W+ V +R+ M D ++K PGCS IEVDG+V EF+ G+ ++ ++I L I L+
Sbjct: 588 KWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLE 647
Query: 474 SLCFFDDGNEV 484
++ + + + +
Sbjct: 648 TIGYVPNKSHL 658
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 194/388 (50%), Gaps = 52/388 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+KQI + + +G +DPF+ ++I + S L + ++F + + + WNT+IR
Sbjct: 49 KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108
Query: 62 GFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+A + P ++ ++ +ML +S P+ +TF F+++A ++ LF G H VI++
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F+LN L+H YA C + ++F RDV+SW S+I + + G
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG-----------C 217
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE EALE F M+ +PN +VG L+ACA + GR
Sbjct: 218 PE--------------------EALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H+Y++RN I + L A++DMY KCG +E A +FD MP +D+ ++T+++ G A
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+ +A +F M PN+ ++ + L+ + G + A ++ E+
Sbjct: 318 EYDAAQGIFDAM------PNQDIAA----------WNALISAYEQCGKPKEALELFHELQ 361
Query: 361 I----EPDNYVLGALLNACRVHGDVDLG 384
+ +PD L + L+AC G +DLG
Sbjct: 362 LSKTAKPDEVTLVSTLSACAQLGAMDLG 389
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/498 (36%), Positives = 290/498 (58%), Gaps = 26/498 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ K++ +HL SG + K+I ++S L H LF + + +T+++NTM
Sbjct: 1 MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSS-SLHHARLLFDAVYHPSTYLYNTMF 59
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +A P+ A L++ M R P+ YTF F+L+AC+ + L G H Q ++ G
Sbjct: 60 RVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLG 119
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ FV N L+HLY + + MD AR++FD RD+ SWT+L+ YA S + AR++FD+M
Sbjct: 120 GHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEM 179
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE++ VS+SAM+ YV+ + F+EALE F + P+ + ++ L ACA LGALD GR
Sbjct: 180 PERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGR 239
Query: 241 WIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W++++V G +D + TA+IDM+ KCG IE A VF+ + V +T+++SGLA H
Sbjct: 240 WVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMH 299
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
IE F +M G+ P+E M +G+EP V+H
Sbjct: 300 GLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEH 359
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+GC+VDLLGRAG+++ A +++ EMP EP+ + GALLNACRV+ +V++G+ + L++
Sbjct: 360 FGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIKDE 419
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ +++ L ++Y +W+ VEKV+ M++ RK PGCSLIEV G+ EFV G++++
Sbjct: 420 PWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVVGDKSH 479
Query: 456 VLMEEIVLLLFGIDKHLK 473
EI L L + K
Sbjct: 480 PCAVEICLNLSKANMEFK 497
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 182/491 (37%), Positives = 282/491 (57%), Gaps = 27/491 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+++KQI ++L +G + D A +++ FC AS D ++ Y +F + ++ F+WNT+I
Sbjct: 38 MRELKQIHANLIKTGLISDTVAASRVLAFCCASP-SDRNYAYLVFTRINHKNPFVWNTII 96
Query: 61 RGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
RGF+ + P A +++ ML S P T+ + +A A G H +VI+ G
Sbjct: 97 RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEG 156
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
E F+ N +LH+Y TC C+ A +LF + DV++W S+I G AK G I A+++FD
Sbjct: 157 LEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFD 216
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP++N VSW++MI+G+V+ FK+ALE F MQ +P+ +V L ACA+LGA +Q
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQ 276
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GRWIH Y+ RN EL+ I+ TA+IDMY KCGC E VF+ P + + + S+I GLAN
Sbjct: 277 GRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLAN 336
Query: 299 HDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQ 334
+ A++LF+ ++ G+ P+ M E Y IEP ++
Sbjct: 337 NGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIK 396
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY C+V++LG AG+L+ A+ ++++MP+E D + +LL ACR +G+V++ K L
Sbjct: 397 HYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAKRAANCLKNL 456
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
D +VL+SN YAS + + R M++ ++ K GCS IEVD V EFVS +
Sbjct: 457 DPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFVSCGKK 516
Query: 455 NVLMEEIVLLL 465
+ EI LL
Sbjct: 517 HPKSTEIYSLL 527
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/507 (36%), Positives = 283/507 (55%), Gaps = 32/507 (6%)
Query: 5 KQIQSHLTVSGTLWDPF---AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+Q+ H+ G ++ F A+ ++ C G L +F WN +I
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLC-----GQLDTARGVFDVCPKADVITWNMIIS 192
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ + + ++ L+ M LP T +L AC+ L G H+ V ES
Sbjct: 193 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 252
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N ++ +YA C MD A +F NRD+ISWT++++G+ G+I +AR FDKMP
Sbjct: 253 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 312
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
EK+ VSW+AMI+GY++ + FKEALE F MQ +P+ +V LTACA LGAL+ G W
Sbjct: 313 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 372
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
I Y+DRN I+ D+ + A+IDMY KCG ++ A S+F M RD F +T++I GLA +
Sbjct: 373 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 432
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
A+++F M ++P+E M+ +GIEP + HYG
Sbjct: 433 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 492
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
CLVDLL RAG L+ A +V+ MPI+ ++ V GALL CRV+ + D+ + V+ ++E D
Sbjct: 493 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 552
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ V+VLL NIYA+ ++WN + ++R+ M D ++K PGCSLIE++G V EFV+G+R++
Sbjct: 553 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQ 612
Query: 458 MEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ I L + + LK + D +EV
Sbjct: 613 TKNIDAKLDKMTQDLKLAGYSPDISEV 639
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 189/398 (47%), Gaps = 51/398 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q++Q+ G +P +++ FC + GD + RLF + FIWNTMI
Sbjct: 31 MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 90
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ + P +LY +MLR P+ YTF F+ + L G H V++ G +
Sbjct: 91 RGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ 150
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV L+ +Y C +D AR +FD+ DVI+W +I+ Y K G+ +R++F M
Sbjct: 151 YNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM 210
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+K + P +V L+AC+ L L G+
Sbjct: 211 EDKQVL-------------------------------PTTVTLVLVLSACSKLKDLRTGK 239
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H+YV +E +++L A+IDMYA CG +++A +F SM NRD+ ++T+++SG N
Sbjct: 240 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+ A F +M + V + ++D R+ + A ++ R M
Sbjct: 300 EIDVARNYFDKMPEKDYVS----------------WTAMIDGYIRSNRFKEALELFRNMQ 343
Query: 361 ---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
++PD + + ++L AC G ++LG E + + ++R+
Sbjct: 344 ATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRN 380
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/498 (38%), Positives = 279/498 (56%), Gaps = 58/498 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+ + L V+G L +V + + F SA + G + + ++LF + F+WNTMI
Sbjct: 27 RSLKQLHAFLIVNG-LNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMI 85
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG A+ +P A +LY QM P+ +TFSF+L+AC S + +G H +V++ G++
Sbjct: 86 RGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQ 145
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV N L++ +A C + AR LFD S R+V+ W++L GYA+ G++ +ARQ+FD+M
Sbjct: 146 SNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEM 205
Query: 181 P-------------------------------EKNAVSWSAMINGYVQVDLFKEALEHFN 209
P +K+ V+W+AMI GYV L KEALE F+
Sbjct: 206 PMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFD 265
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKC 268
M+ G RP+ ++ L+A A LG L+ G+ IH + D +L ++L A+IDMYAKC
Sbjct: 266 AMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKC 325
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------ 322
G I A VF M +D ++ S+I GLA H + +I LF M + PNE
Sbjct: 326 GSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVL 385
Query: 323 ------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
M ++ IEP ++HYGC+VD+LGRAG+L A + M IEP+
Sbjct: 386 VACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPN 445
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ LL ACRVHGDV+LG+ E L++ D G +VLLSNIYAS +W+GV+KVR+
Sbjct: 446 AIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKL 505
Query: 425 MEDNEVRKVPGCSLIEVD 442
M+D V+K G SLI+ D
Sbjct: 506 MDDGGVKKKVGHSLIDSD 523
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/499 (35%), Positives = 285/499 (57%), Gaps = 29/499 (5%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
M + KQIQ+ SG + PFA +++ F + S GD+ H YR+F+ + T WN++
Sbjct: 18 MSEFKQIQAFFITSGLSQHHPFA-SRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSI 76
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IRGF++ P + +++ +MLR P++ T+ F+ +A A S L + L H ++ + G
Sbjct: 77 IRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEGL 136
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
F+ N L+H+Y +C + ARK+FD + R+ +SW ++++GYAK G + A Q+F
Sbjct: 137 WFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXS 196
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP+++ VSWS+MI+G V+ + AL F M++ G + N +V L ACA LGAL+ G
Sbjct: 197 MPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXG 256
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLA 297
R +H Y+ N + ++L T+++DMYAKCG IE A +VF +P DV + ++I GLA
Sbjct: 257 RXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLA 316
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H ++ELF MQ+ G+VP+E S+ + G+ P
Sbjct: 317 THGLVXESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGK-QGMVPKS 375
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HY C+VD+L RAG L A + +MP+EP +LGALLN C H DL + L+E
Sbjct: 376 EHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIE 435
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
DH+G ++ LSN+YA + W+ +R ME V+K PG S +EV G + F++ ++
Sbjct: 436 LEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVLGTLHRFIAHDK 495
Query: 454 TNVLMEEIVLLLFGIDKHL 472
T+ +E+I ++L I + +
Sbjct: 496 THNDLEKIYMMLNTIVRQM 514
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/461 (39%), Positives = 263/461 (57%), Gaps = 25/461 (5%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD-TSCLFVGLIC 110
T WN +I G ++ + M R+ P T+ +L AC T + +G+
Sbjct: 86 TPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQV 145
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H +V+ G V N L+ +YA C M A K+FD R V+SWTSL++G A+ GQ+
Sbjct: 146 HGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQV 205
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
AR +FD+MPE++ VSW+AMI+GYV F+EALE F MQ + +V +TAC
Sbjct: 206 DEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITAC 265
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
A LGAL+ G W+ Y+ R GI++D +G A+IDMY+KCG IE A VF M +RD F +T
Sbjct: 266 AQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWT 325
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEI 326
++I GLA + AIE+F RM P+E SM E
Sbjct: 326 AIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEA 385
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I P V HYGC++DLLGRAG + A + +MP+ P++ + G LL ACRVHG+ ++G+
Sbjct: 386 YNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL 445
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
E L+E ++ V++LLSNIYA +W V ++R + + ++K PGCSLIE+DG++
Sbjct: 446 VAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIH 505
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
EFV+G++++ + +EI L I L ++ +F D EV E
Sbjct: 506 EFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVE 546
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 117/276 (42%), Gaps = 39/276 (14%)
Query: 15 GTLW---DPFAVGKIIGFCSA----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN 67
G+ W D V ++ + S + +G + LF + R T W MI G+
Sbjct: 175 GSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAA 234
Query: 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
+A ++++M S+ + +T ++ ACA L +G + R G + FV N
Sbjct: 235 RFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGN 294
Query: 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
L+ +Y+ C ++ A +F +RD +WT++I G A
Sbjct: 295 ALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLA---------------------- 332
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYV 246
+NGY + EA+E F+ M P+ +G LTAC G +D+GR + + +
Sbjct: 333 ----VNGYEE-----EAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMI 383
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ I +++ IID+ + G I A D MP
Sbjct: 384 EAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMP 419
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 173/429 (40%), Positives = 250/429 (58%), Gaps = 33/429 (7%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLP--------NNYTFSFILRACADTSCLFVGL 108
N MI+ +A+ + A +Y +MLR P + +T+ F+L+AC + +G
Sbjct: 77 NAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGR 136
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HA V R G ES+ V N L+ +Y C + ARK FD +DV+SW +LI+ +A+ G
Sbjct: 137 QVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMG 196
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ AR++F MP+K VSW+A+++GY V F A+E F MQ+ GF P+ IV L
Sbjct: 197 QMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLP 256
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA LGAL+ GRWI+AY ++G+ + + A+++MYAKCGCIE A +F M +DV +
Sbjct: 257 ACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVIS 316
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEG-VVPN------------------------ESM 323
+++ I GLA H ++ A+ LF M EG V+PN + M
Sbjct: 317 WSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQM 376
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
E YG+EPGV+HYGC+VDLLGR+G ++ A +R MP+ PD + G+LL+ACR HGDV+
Sbjct: 377 KEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVET 436
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
E LVE G V+L+N+Y + +W V R+ + RK PGCS+IEVD
Sbjct: 437 AVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEVDN 496
Query: 444 VVCEFVSGE 452
VV EFV+G+
Sbjct: 497 VVREFVAGQ 505
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 185/507 (36%), Positives = 283/507 (55%), Gaps = 32/507 (6%)
Query: 5 KQIQSHLTVSGTLWDPF---AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+Q+ H+ G ++ F A+ ++ C G L +F WN +I
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLC-----GQLDTARGVFDVCPKADVITWNMIIS 213
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ + + ++ L+ M LP T +L AC+ L G H+ V ES
Sbjct: 214 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 273
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N ++ +YA C MD A +F NRD+ISWT++++G+ G+I +AR FDKMP
Sbjct: 274 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 333
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
EK+ VSW+AMI+GY++ + FKEALE F MQ +P+ +V LTACA LGAL+ G W
Sbjct: 334 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 393
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
I Y+DRN I+ D+ + A+IDMY KCG ++ A S+F M RD F +T++I GLA +
Sbjct: 394 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 453
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
A+++F M ++P+E M+ +GIEP + HYG
Sbjct: 454 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 513
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
CLVDLL RAG L+ A +V+ MPI+ ++ V GALL CRV+ + D+ + V+ ++E D
Sbjct: 514 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 573
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ V+VLL NIYA+ ++WN + ++R+ M D ++K PGCSLIE++G V EFV+G+R++
Sbjct: 574 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQ 633
Query: 458 MEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ I L + + LK + D +EV
Sbjct: 634 TKNIDAKLDKMTQDLKLAGYSPDISEV 660
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 189/398 (47%), Gaps = 51/398 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q++Q+ G +P +++ FC + GD + RLF + FIWNTMI
Sbjct: 52 MDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMI 111
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ + P +LY +MLR P+ YTF F+ + L G H V++ G +
Sbjct: 112 RGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ 171
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV L+ +Y C +D AR +FD+ DVI+W +I+ Y K G+ +R++F M
Sbjct: 172 YNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM 231
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+K + P +V L+AC+ L L G+
Sbjct: 232 EDKQVL-------------------------------PTTVTLVLVLSACSKLKDLRTGK 260
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H+YV +E +++L A+IDMYA CG +++A +F SM NRD+ ++T+++SG N
Sbjct: 261 KVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+ A F +M + V + ++D R+ + A ++ R M
Sbjct: 321 EIDVARNYFDKMPEKDYVS----------------WTAMIDGYIRSNRFKEALELFRNMQ 364
Query: 361 ---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
++PD + + ++L AC G ++LG E + + ++R+
Sbjct: 365 ATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRN 401
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 185/500 (37%), Positives = 279/500 (55%), Gaps = 29/500 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQ + + SG F + +++ FC+ S G LSH ++LF +Q+ T I+NTMI
Sbjct: 18 MNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + E + A A++ + R+ P+ YT ++L+A A + + +G HA I+LG
Sbjct: 78 KALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSA 137
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+FV N LL +Y + + M AR++FD +SWT +I GYA G + AR++FD
Sbjct: 138 VNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMA 197
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ W AMI+GYVQ + FKE L F MQL P+ A IV L+ACA +GALD G
Sbjct: 198 TVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGI 257
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y+ R G+ L + + T +IDMYAKCG ++ A +F+ M RD + ++ISG+A
Sbjct: 258 WIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDG 317
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
AI+LFM M+ G+ P+ MS ++ IEP +HY
Sbjct: 318 DGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHY 377
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP--IEPDNYVLG--ALLNACRVHGDVDLGKETVESLV 392
GC++DLL R G E A+ V++ +P P + A L+AC HG + E L
Sbjct: 378 GCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLF 437
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+ H G +VLLSN+YA+ + ++VR M+ V KVPGCS I+V+GVV EF++GE
Sbjct: 438 QLE-RHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGE 496
Query: 453 RTNVLMEEIVLLLFGIDKHL 472
+T+ ++ I L+L ++K +
Sbjct: 497 KTHRHIDNIHLVLEELNKQI 516
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 276/481 (57%), Gaps = 29/481 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + RLF R ++NT++ +A + +A A+ +ML+ P+ T +
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 340
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A LF G +CH VIR G E +D + N ++ +Y C + A ++FD+ N+ V+
Sbjct: 341 SASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVV 400
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW SL G+ ++G + A ++F+++PE+NAV W+ MI+G VQ LF++A+E F MQ G
Sbjct: 401 SWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG 460
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ + ++G +AC +LGA + +W+H Y+++NGI D+ L TA++DM+A+CG ++A
Sbjct: 461 IKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAM 520
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF+ M RDV A+T+ I +A A LF +M ++GV P+
Sbjct: 521 QVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGG 580
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
S+ E +GI P ++HYGC+VDLLGRAG+L A +++ MP+EP++ V G+LL
Sbjct: 581 QVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL 640
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
ACRVH +V++ E + E + GVHVLLSNIYAS +W V +VR + + VRK
Sbjct: 641 AACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRK 700
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLL 492
VPG S ++V+GV+ EF SG+ ++ M I L+L ++ C F D + LL
Sbjct: 701 VPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMN------CRFSDAGHIPDLSNVLL 754
Query: 493 D 493
D
Sbjct: 755 D 755
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 162/349 (46%), Gaps = 42/349 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG----FCSASDIGDLSHGYRLFV--CLQYRTTF 54
+ Q+KQ+ +T +G P + K++ S + + LF F
Sbjct: 38 LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALF 97
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+ N++IRG++ +A LY +ML PN+YTF F+L C + G+ H V
Sbjct: 98 MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+++G E F+ N L+H YA C MD K+F+ R+V+SWTSLI GYA+
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG------- 210
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
D KEA+ F M G RP+ +V ++ACA L
Sbjct: 211 ------------------------DRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLR 246
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
LD G + AY+ G++L+ ++ A++DMY KCG I+ A +FD +R++ Y +++S
Sbjct: 247 DLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILS 306
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343
A + A+ + M +G P+ ++ + I Q LVDL
Sbjct: 307 NYARQGLAREALAILDEMLQQGPRPDR-VTMLSAISASAQ----LVDLF 350
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 175/383 (45%), Gaps = 52/383 (13%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q+ + G D F +I F ++ G + HG+++F + R W ++I G+A
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHF--YAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+ P +A +L+ +M+ + P++ T ++ ACA L +G A + LG + +
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVM 269
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
+N L+ +Y C G I A+++FD+ ++N
Sbjct: 270 VNALVDMYMKC-------------------------------GAIDAAKRLFDECVDRNL 298
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V ++ +++ Y + L +EAL + M G RP+ ++ A++A A L L G+ H Y
Sbjct: 299 VLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGY 358
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V RNG+E +G IIDMY KCG E AC VFD M N+ V ++ SL +G + SA
Sbjct: 359 VIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESA 418
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IE 362
E+F + +P E + ++ L + + E A ++ REM I+
Sbjct: 419 WEVFNQ------IP----------ERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIK 462
Query: 363 PDNYVLGALLNACRVHGDVDLGK 385
D + + +AC G +L K
Sbjct: 463 ADRVTMMGIASACGYLGAPELAK 485
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 185/500 (37%), Positives = 279/500 (55%), Gaps = 29/500 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQ + + SG F + +++ FC+ S G LSH ++LF +Q+ T I+NTMI
Sbjct: 18 MNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + E + A A++ + R+ P+ YT ++L+A A + + +G HA I+LG
Sbjct: 78 KALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSA 137
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+FV N LL +Y + + M AR++FD +SWT +I GYA G + AR++FD
Sbjct: 138 VNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMA 197
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ W AMI+GYVQ + FKE L F MQL P+ A IV L+ACA +GALD G
Sbjct: 198 TVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGI 257
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y+ R G+ L + + T +IDMYAKCG ++ A +F+ M RD + ++ISG+A
Sbjct: 258 WIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDG 317
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
AI+LFM M+ G+ P+ MS ++ IEP +HY
Sbjct: 318 DGEGAIKLFMEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHY 377
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP--IEPDNYVLG--ALLNACRVHGDVDLGKETVESLV 392
GC++DLL R G E A+ V++ +P P + A L+AC HG + E L
Sbjct: 378 GCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLF 437
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+ H G +VLLSN+YA+ + ++VR M+ V KVPGCS I+V+GVV EF++GE
Sbjct: 438 QLE-RHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGE 496
Query: 453 RTNVLMEEIVLLLFGIDKHL 472
+T+ ++ I L+L ++K +
Sbjct: 497 KTHRHIDNIHLVLEELNKQI 516
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 183/496 (36%), Positives = 278/496 (56%), Gaps = 36/496 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+Q+ L G F K++ FC+ + + +LS+ +F ++ +++ MI
Sbjct: 68 LNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLA-LSNLSYARFIFDHVESPNVYLYTAMI 126
Query: 61 RGFAEKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+A ++ A LY+ M+R PN++ + +L++C + H QV+R G+
Sbjct: 127 TAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGF 186
Query: 120 ESYDFVLNGLLHLYAT-CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
E Y V LL Y + ++ AR LFD R+V+SWT++I+GY + GQI A +F+
Sbjct: 187 EQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFE 246
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-------GFRPNHAGIVGALTACA 231
+MPE++ SW+A+I GY Q LF EAL F M G RPN V +L+AC
Sbjct: 247 EMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACG 306
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
G L G+WIH YV RNG+ LD + A++DMY KCGC++ A VFD R + ++ S
Sbjct: 307 HTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNS 366
Query: 292 LISGLANHDQSASAIELFMRMQL--EGVVPNES------------------------MSE 325
+I+ LA H QS +AI +F M GV P+E M++
Sbjct: 367 MINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQ 426
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
YGIEP ++HYGCLVDLLGRAG E A +VVR M IEPD + G+LLN C++HG DL +
Sbjct: 427 NYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAE 486
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+++ L++ ++ G ++L+NIY +W+ V KVR+ +++ K PGCS IE+D V
Sbjct: 487 FSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWIEIDNQV 546
Query: 446 CEFVSGERTNVLMEEI 461
+F S ++T+ EEI
Sbjct: 547 HQFYSVDKTHPRTEEI 562
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 184/490 (37%), Positives = 283/490 (57%), Gaps = 26/490 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK +K+I S L +G D A +I+ FC AS GD+++ Y +FV +Q F WNT+I
Sbjct: 35 MKDLKKIHSQLIKTGLAKDTNAASRILAFC-ASPAGDINYAYLVFVQIQNPNIFAWNTII 93
Query: 61 RGFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RGF+ + P + +LY ML S P T+ + +A A G H ++I+LG
Sbjct: 94 RGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGL 153
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E+ F+ N +L +Y C ARK+FD ++ D+++W ++I G AK G + +R++FDK
Sbjct: 154 ENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDK 213
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +NAVSW++MI+GYV+ F +ALE F MQ+ P+ +V L ACA LGA+ QG
Sbjct: 214 MSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQG 273
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
WIH Y+ + EL+ I+ TAIIDMY+KCG I+ A VF S P R + + S+I GLA +
Sbjct: 274 EWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMN 333
Query: 300 DQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQH 335
Q A++LF +Q + P++ M + Y I+PG++H
Sbjct: 334 GQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKH 393
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+ C+VD+LGRAG+LE A++++R M ++PD + G+LL +C +G++ + K L+E +
Sbjct: 394 FSCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELN 453
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
VL++N YA+ + K R +++N + K PGCS IEV G V EFV+G R +
Sbjct: 454 PSESSSFVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCIEVGGEVHEFVAGGRAH 513
Query: 456 VLMEEIVLLL 465
++EI +L
Sbjct: 514 PEIKEIYRVL 523
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 172/462 (37%), Positives = 261/462 (56%), Gaps = 24/462 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL ++F R WN+MI G+ + +A Y++M P+ T ++
Sbjct: 156 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 215
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+CA L +G H + G + + N L+ +Y C ++ ARKLFD N+ ++
Sbjct: 216 SSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMV 275
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT+++ GYA+SG + +A ++FD+MP+K+ V W+AMI GYV + KEAL FN MQ
Sbjct: 276 SWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 335
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ +V L+AC+ LGALD G WIH Y++++ + L++ LGTA+IDMYAKCG I A
Sbjct: 336 INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAI 395
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF +P R+ +T++ISGLA H + AI F M V+P+E
Sbjct: 396 QVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGG 455
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
MS + + P ++HY C+VDLLGRAG+LE A+++++ MPIE D V GAL
Sbjct: 456 LVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 515
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
ACR+HG+V +G+ L++ G++VLL+N+Y E W K R+ M V
Sbjct: 516 FFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVE 575
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
K PGCS IEV+G+V EF+ ++++ E+I L + + L+
Sbjct: 576 KTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLE 617
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 199/385 (51%), Gaps = 45/385 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQIQS + ++G + D FA ++I FC+ S+ DL + + + TF WN I
Sbjct: 19 ISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAI 78
Query: 61 RGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RGF + P +A LYK++L+ D P+NYT+ + +ACA S + +G V+ LG+
Sbjct: 79 RGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGF 138
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+S FV N ++HL +C +D ARK MFDK
Sbjct: 139 DSDIFVSNAVIHLLVSCGDLDGARK-------------------------------MFDK 167
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
++ VSW++MINGYV+ EAL + M++ G +P+ ++G +++CA L LD G
Sbjct: 168 SCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLG 227
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R H Y++ NG++L + L A++DMY KCG +E+A +FDSM N+ + ++T+++ G A
Sbjct: 228 RESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQS 287
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
A +LF M + VVP +M G H R A ++ M
Sbjct: 288 GLLDMAWKLFDEMPDKDVVPWNAMI------GGYVH-------ANRGKEALALFNEMQAM 334
Query: 360 PIEPDNYVLGALLNACRVHGDVDLG 384
I PD + + L+AC G +D+G
Sbjct: 335 NINPDEVTMVSCLSACSQLGALDVG 359
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 188/484 (38%), Positives = 271/484 (55%), Gaps = 27/484 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D + + ++ F A GDLS RLF + + WN+MI FA+ N P A L+ +
Sbjct: 160 DLYILNSLVRFYGAC--GDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLK 217
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M R + +PN+ T +L ACA L G + + R G + + N +L +Y C
Sbjct: 218 MERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGS 277
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D A+KLFD RDV SWT +++GYAK G AR +F+ MP K +W+ +I+ Y Q
Sbjct: 278 VDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQN 337
Query: 199 DLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
KEAL FN +QL +P+ +V L+ACA LGA+D G WIH Y+ R GI L+ L
Sbjct: 338 GKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHL 397
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
++++DMYAKCG +E A VF S+ RDV+ ++++I+GL H + +AI+LF MQ V
Sbjct: 398 ISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKV 457
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
PN M +YG+ P ++HY C+VD+LGRAG LE A
Sbjct: 458 KPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAM 517
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+++ EM P V GALL AC +H +V+LG+ + L++ + G VLLSNIYA T
Sbjct: 518 ELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTG 577
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+W V ++R+ M D E++K PGCS IE +G V EF+ G+ T+ L I L I LK
Sbjct: 578 RWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLK 637
Query: 474 SLCF 477
S+ +
Sbjct: 638 SVGY 641
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 189/388 (48%), Gaps = 52/388 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+K++ + + +G +DPF+ K+ + S L + LF + + WNT+IR
Sbjct: 39 KQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIR 98
Query: 62 GFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+A ++P ++F ++ +L + + LPN +TF F+++A ++ VG H I+L +
Sbjct: 99 AYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFG 158
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
++LN L+ Y C + A +LF +DV+SW S+I+ +A+ A ++F KM
Sbjct: 159 MDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKM 218
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+N + PN +VG L+ACA L+ GR
Sbjct: 219 ERENVM-------------------------------PNSVTMVGVLSACAKKLDLEFGR 247
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+ +Y++R GI++D+ L A++DMY KCG ++ A +FD MP RDVF++T ++ G A
Sbjct: 248 WVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMG 307
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+A +F M ++ + + L+ + G + A + E+
Sbjct: 308 DYDAARLVFNAMPVKEIAA----------------WNVLISAYEQNGKPKEALAIFNELQ 351
Query: 361 I----EPDNYVLGALLNACRVHGDVDLG 384
+ +PD L + L+AC G +DLG
Sbjct: 352 LSKIAKPDEVTLVSTLSACAQLGAIDLG 379
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 177/539 (32%), Positives = 296/539 (54%), Gaps = 57/539 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ + Q+ + + SG D + G ++ + + ++F + FIWN +I
Sbjct: 46 LQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVI 105
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G E N+ KA Y +M+ D PN +T+ + +AC+ + G H V++ G
Sbjct: 106 KGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIG 164
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY---------------- 164
S + + + +YA+ ++ ARK+F S DV+ W ++I+GY
Sbjct: 165 SDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQM 223
Query: 165 ---------------AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
AK G + AR++FD+M E++ +SWS+M++GY+ +KEALE F
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQ 283
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
MQ RP + L AC+ +GA+DQGRW+HAY+ RN I+LD +LGTA++DMYAKCG
Sbjct: 284 QMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG 343
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------- 320
++ VF+ M R++F + ++I GLA H ++ A+ELF ++Q + PN
Sbjct: 344 RLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLT 403
Query: 321 ---------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
++M E YG++P ++HYGC+VDLLGR+G+ A+ ++ MP++P+
Sbjct: 404 ACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNA 463
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
V GALL ACR+HG+ DL + + L+E + G +VLLSNIYA +++ V K+R+ M
Sbjct: 464 AVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLM 523
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ ++ VPG S+++++G V EF G+ ++ M+EI L I + L+ D ++V
Sbjct: 524 KNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQV 582
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 175/494 (35%), Positives = 283/494 (57%), Gaps = 30/494 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ QI H+ +G +P A + + FC AS G++++ Y+LFV + + WNT+I
Sbjct: 41 INHFHQIYPHIIKTGLTLNPIASTRALTFC-ASPSGNINYAYKLFVRMPNPNLYSWNTII 99
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R F+ + P A +L+ ML S P T+ + +A A G H +V++LG +
Sbjct: 100 RAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQ 159
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMS----VNRDVISWTSLINGYAKSGQISIARQM 176
+ F+ N ++++YA M AR++FD + DV++ S+I GYAK G+I +R +
Sbjct: 160 NDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNL 219
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD M + +VSW++MI+GYV+ EALE FN MQ+ GF + +V L ACA LGAL
Sbjct: 220 FDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGAL 279
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G+W+H Y+ RN EL++I+ TAIIDMY KCG +E A VF++ P R + + S+I GL
Sbjct: 280 QHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGL 339
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEI-------------------------YGIEP 331
A + A E F +++ ++ +S+S I Y IEP
Sbjct: 340 AMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEP 399
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++HY C+VD+LG+AG+LE A+++++ MP++PD + G+LL++CR H +V + + + +
Sbjct: 400 SIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRV 459
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
E + +VL+SN++A++ ++ + R M++N K PGCS IE+ G V EF++G
Sbjct: 460 YELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEFIAG 519
Query: 452 ERTNVLMEEIVLLL 465
R + +EI LL
Sbjct: 520 GRLHPKTQEIYHLL 533
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/462 (40%), Positives = 276/462 (59%), Gaps = 32/462 (6%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSD----FLPNNYTFSFILRACADTSCLFVGLIC 110
+WN MIR +++ + L+ +ML D +P+ YTF+F++ +C+ L G I
Sbjct: 141 LWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIV 200
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H V++ G+ES +V N ++++ + M+ ARK+F+ RDV SWTSL+ GYAK G++
Sbjct: 201 HGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEM 260
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR--PNHAGIVGALT 228
A ++F+ MP +N VSW+ MI+G++ + EAL F M LC R PN A +V L+
Sbjct: 261 DRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNM-LCDDRVNPNEAVLVCVLS 319
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA LGALDQG WIH Y+D+ GI + TA+IDMYAKCG I+ A VF+ + RDV +
Sbjct: 320 ACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLS 379
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMS 324
+TS+ISGL+ H A+ +F +M E V+PNE +M
Sbjct: 380 FTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANME 439
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
++GI P ++HYGC +DLLGRAG LE A +VV+ MP+EPD + ALL+A R+H +V+LG
Sbjct: 440 SLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLG 499
Query: 385 KETVESLVE-RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
++ + + + +S DH G VLLSN+YAS +W V ++R+ M D PGCS IEV+G
Sbjct: 500 EQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNG 559
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
+V EF ++ + + EI L I K L + + + +V+
Sbjct: 560 LVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVS 601
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 99/236 (41%), Gaps = 32/236 (13%)
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
LPN TFS +L S L HAQV+ S + L+H Y AR
Sbjct: 71 LPNPQTFSLLLNQRPKLSPL---QQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARI 127
Query: 145 LFDM--SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
LFD S + + W +I Y+K + N + LF
Sbjct: 128 LFDHYPSPSPPIKLWNVMIRTYSK------------------------IRNSQEPIHLFL 163
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
L MQ+ P+ +T+C+ +L G +H V ++G E ++ +G ++I
Sbjct: 164 RMLTLDGPMQVV---PDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVI 220
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+M + +E A VF+ M RDVF++TSL+ G A H + A ELF M + V
Sbjct: 221 NMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDV 276
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 123/308 (39%), Gaps = 67/308 (21%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSD- 83
+I CS + ++F + R F W +++ G+A+ E +A L+ M +R+D
Sbjct: 219 VINMCSV--FARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDV 276
Query: 84 --------FL----------------------PNNYTFSFILRACADTSCLFVGLICHAQ 113
FL PN +L ACA L G H
Sbjct: 277 SWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLY 336
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+ ++G + L+ +YA C +D A ++F+ RDV+S+TS+I+G + G A
Sbjct: 337 IDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDA 396
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
++F +M ++N + PN I+G L C+
Sbjct: 397 LRVFYQMLDENVM-------------------------------PNEITILGVLNGCSHS 425
Query: 234 GALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTS 291
G +++G I A ++ GI I ID+ + G +E A V +MP D+ + +
Sbjct: 426 GLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRA 485
Query: 292 LISGLANH 299
L+S H
Sbjct: 486 LLSASRIH 493
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 290/512 (56%), Gaps = 42/512 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
+K+IK I +H+ S L + +++ FCS S+ ++ +F ++Y ++N
Sbjct: 32 LKEIKIIHTHILKSPILHTRDQYYLFTRLLYFCSFSNYASFNYANNVFHMIKYPELRVYN 91
Query: 58 TMIRGFA------EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL-FVGLIC 110
MIR + + N KA LYKQML +PNN TF F+++ C+ VG +
Sbjct: 92 IMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVI 151
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HA V++ G+ + FV N L+ L+ ARK+FD RDV+SW S++ GY ++G++
Sbjct: 152 HAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEV 211
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG----FRPNHAGIVGA 226
+A +F KM +N ++W+++I G VQ KE+LE F+ MQ +P+ I
Sbjct: 212 EMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASV 271
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L+ACA LG++D G+W+HAY+ +N IE D+++GTA+++MY KCG ++ A +F+ MP +D
Sbjct: 272 LSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDA 331
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ES 322
A+T++IS A H A + F+ M+ GV PN +
Sbjct: 332 SAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDV 391
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
M +Y IEP + HY C+VD+L RA + + A ++R MP++PD YV GALL C++HG++
Sbjct: 392 MKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIK 451
Query: 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR-KVPGCSLIEV 441
LG++ L++ + ++ L +IY +++ +++R M++ + K+PGCS+IE+
Sbjct: 452 LGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEI 511
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+GVV EF GE + M+E+ L+L + +K
Sbjct: 512 NGVVQEFSVGE---IPMKELPLVLDRLRNEMK 540
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/457 (37%), Positives = 266/457 (58%), Gaps = 24/457 (5%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
T +WN +I G + + + M+R+ +P T+ +L AC +++G+ H
Sbjct: 87 TPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVH 146
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
V+ G V N L+ +YA C+ MD A +LF+ R+ +SWTS+I+G+ + GQ+
Sbjct: 147 KCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVD 206
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
AR +FD MPE++ VSW+AMI+GYVQ F+EALE F MQ R + +V +TACA
Sbjct: 207 QARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACA 266
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LGAL+ G W Y+ R+GI++D +G A++DMY+KCG I+ A VF M RD F +T+
Sbjct: 267 QLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTA 326
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIY 327
+I GLA + AI +F RM P+E SM+ Y
Sbjct: 327 VILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSY 386
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GI P V H+GCL+DLLGRAG L+ A + + MP+ P++ + G LL ACRVHG+ ++G+
Sbjct: 387 GIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLA 446
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E L+E ++ V++LLSN+YA + +W V ++R+ + + ++K PGCSLIE++G + E
Sbjct: 447 AEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHE 506
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
F++G+R++ + +EI L + LK + D E+
Sbjct: 507 FIAGDRSHPMSKEIYSKLDKVLTDLKDAGYVPDLTEI 543
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 134/318 (42%), Gaps = 54/318 (16%)
Query: 75 LYKQMLRSDFLPNNYTFSFILRA-CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
+Y ML P+ YTF +L+A A VG HA V++ G
Sbjct: 5 VYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFG--------------- 49
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSA 190
M +N V S SL+ YA G ++AR + D P + V W+A
Sbjct: 50 --------------MELNAHVAS--SLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNA 93
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
+I+G+ + F+ + F M G P + L+AC + G +H V +G
Sbjct: 94 LISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASG 153
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+ D+ +G A+IDMYA+C ++ A +F+ M R+ ++TS+ISG Q A LF
Sbjct: 154 VLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFD 213
Query: 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYV 367
M E + ++D +AG A ++ REM + D +
Sbjct: 214 CMP----------------ERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFT 257
Query: 368 LGALLNACRVHGDVDLGK 385
+ +++ AC G ++ G+
Sbjct: 258 MVSVVTACAQLGALETGE 275
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 32/251 (12%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G + LF C+ R T W MI G+ + + +A ++++M S + +T +
Sbjct: 202 LGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSV 261
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+ ACA L G + R G + FV N L+ +Y+ C + A +F RD
Sbjct: 262 VTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDK 321
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+WT++I G A +G A MF +M + +F+
Sbjct: 322 FTWTAVILGLAVNGHGEEAINMFYRM-----------------LRVFEA----------- 353
Query: 215 GFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P+ +G LTAC G +D+GR + + GI +++ +ID+ + G ++
Sbjct: 354 ---PDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKE 410
Query: 274 ACSVFDSMPNR 284
A +MP R
Sbjct: 411 ALETIGNMPMR 421
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 171/461 (37%), Positives = 275/461 (59%), Gaps = 27/461 (5%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQ 113
WN ++ G+ ++ L+ +M + PN+ T +L AC+ L G + +
Sbjct: 205 WNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNK 264
Query: 114 VIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
I+ G + +L N L+ ++A+C MD AR +FD RDVISWTS++ G+A + +I +
Sbjct: 265 YIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDL 324
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR+ FD+MPE++ VSW+AMI+GY++++ FKE L F MQ+ +P+ +V LTACA
Sbjct: 325 ARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAH 384
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGAL+ G W Y+D+N I+ D +G A+IDMY KCG +E A +F+ M +D F +T++
Sbjct: 385 LGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAM 444
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYG 328
I GLAN+ A+ +F M V P+E +M+ +G
Sbjct: 445 IVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHG 504
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I+P + HYGC+VDLLGRAG L+ A +V+ MP++P++ V G+LL ACRVH +V L +
Sbjct: 505 IKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAA 564
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
++E ++ V+VLL NIYA+ ++W + VR+ M + ++K+PGCSL+E++G+V EF
Sbjct: 565 NEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEF 624
Query: 449 VSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
V+G++++ +EI L + + L + + D +EV + G
Sbjct: 625 VAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVG 665
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 190/392 (48%), Gaps = 54/392 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M +I QI S +G + + K+I FC + GD+ + ++F + + FIWNTMI
Sbjct: 48 MYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMI 107
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG--LICHAQVIRLG 118
+G++ N +LYK ML + P+ +TF F+L+ L G L+ HA VI
Sbjct: 108 KGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHA-VIHGF 166
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+S FV G +HL++ C ++ ARK+FDM +V++W +++GY + + ++++F
Sbjct: 167 LDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFI 226
Query: 179 KMPEK-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
+M +K VS PN +V L+AC+ L L
Sbjct: 227 EMEKKCECVS------------------------------PNSVTLVLMLSACSKLKDLV 256
Query: 238 QGRWIH-AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G+ I+ Y+ +E ++IL A+IDM+A CG ++ A VFD M RDV ++TS+++G
Sbjct: 257 GGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGF 316
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
AN + A + F +M V + ++D R + +
Sbjct: 317 ANTCRIDLARKYFDQMPERDYVS----------------WTAMIDGYLRMNRFKEVLTLF 360
Query: 357 REMP---IEPDNYVLGALLNACRVHGDVDLGK 385
R+M ++PD + + ++L AC G ++LG+
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGE 392
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 296/531 (55%), Gaps = 57/531 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ QI QI + + + + F + K++ + S DL + +F + TFIWNTM
Sbjct: 16 LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTM 75
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
IR + P ++ +L+ QM + +P ++Y+ S +++AC G H QV+++G
Sbjct: 76 IRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIG 135
Query: 119 WESYDFVLNGLLHLYATCNCMDPARK-------------------------------LFD 147
S FV L+ +YA ++ AR LFD
Sbjct: 136 LGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFD 195
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
RD++SW ++I+G+A G + A+++FD+ E++ +SWS+MI Y + EAL
Sbjct: 196 RMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRL 255
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F+ MQL P+ +V L+AC +GAL G+ IH ++RN IE+D+ LGT+++DMYAK
Sbjct: 256 FHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAK 315
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------ 321
CG I+ + VF+ M NRDVFA++++I GLANH A++ F +M E + PN+
Sbjct: 316 CGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGV 375
Query: 322 ------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
SMS++Y + P ++HYGC+VD+LGRAG L+ A ++++ MP P
Sbjct: 376 LSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAP 435
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
D V ALL ACR++ +V++ +E +L+E +G +VLLSNIY+ ++W+ V VRR
Sbjct: 436 DAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRR 495
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
M++ ++KVPG S IEVD V EFV+G++++ ++I+ +L I LK+
Sbjct: 496 MMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKA 546
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 180/491 (36%), Positives = 280/491 (57%), Gaps = 27/491 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+++KQI + L +G + D +++ FC AS D+++ Y +F + ++ F+WNT+I
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASP-SDMNYAYLVFTRINHKNPFVWNTII 96
Query: 61 RGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
RGF+ + P A +++ ML S P T+ + +A G H VI+ G
Sbjct: 97 RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEG 156
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
E F+ N +LH+Y TC C+ A ++F + DV++W S+I G+AK G I A+ +FD
Sbjct: 157 LEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFD 216
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP++N VSW++MI+G+V+ FK+AL+ F MQ +P+ +V L ACA+LGA +Q
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQ 276
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GRWIH Y+ RN EL+ I+ TA+IDMY KCGCIE +VF+ P + + + S+I GLAN
Sbjct: 277 GRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLAN 336
Query: 299 HDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQ 334
+ A++LF ++ G+ P+ M E Y IEP ++
Sbjct: 337 NGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIK 396
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY +V++LG AG+LE A+ +++ MP+E D + +LL+ACR G+V++ K + L +
Sbjct: 397 HYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKL 456
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
D +VLLSN YAS + + R M++ ++ K GCS IEVD V EF+S T
Sbjct: 457 DPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGT 516
Query: 455 NVLMEEIVLLL 465
+ EI LL
Sbjct: 517 HPKSAEIYSLL 527
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 187/506 (36%), Positives = 290/506 (57%), Gaps = 39/506 (7%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-TFIWNTMIRGFAEK-NEPIKAFALY 76
D + + I CS+ +G S+ Y LF + + +++N +I+ + P + LY
Sbjct: 9 DNLLLSRFIHACSS--LGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLY 66
Query: 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT- 135
+ + P++Y+F F L+A S + G H+Q IR G S VL + +Y++
Sbjct: 67 NNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSF 126
Query: 136 -CNCMDPARKLFD-MSVNR-DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI 192
C+ ARK+FD MS++ DV W +++NGYAK G + AR +F++MP++N +SW+A+I
Sbjct: 127 GSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALI 186
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI- 251
GY Q + +A+ F MQL P+ ++ ALTACA LGAL+ G WI Y+DR G+
Sbjct: 187 TGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLL 246
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+I L A+IDMYAK G I++A VF++M ++ + +T++I+GLA H A+E+F R
Sbjct: 247 TTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSR 306
Query: 312 MQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ V PN+ M YGIEP ++HYGC++DLLGRAG
Sbjct: 307 MERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAG 366
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
L+ A+ ++ +MP EP+ + G+LL AC HGD +LG+ ++ L+E D+ G + LLSN
Sbjct: 367 HLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSN 426
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
IYAS +WN VR+ M D V+K+PG SLIEV+ V EF++GE ++ + I +L
Sbjct: 427 IYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISHSQFDRIQEVLSK 486
Query: 468 IDKHLKSLCFFDDGNEVATEGGSLLD 493
I++ L F+ E G+LL+
Sbjct: 487 INRQLGLSQHFEK------ESGALLE 506
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/491 (36%), Positives = 280/491 (57%), Gaps = 27/491 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ ++Q +HL SG + FA +I+ FC AS +G++ + Y +F+ +Q F WNT+I
Sbjct: 37 MRDLQQFHAHLIKSGQAIESFAASRILAFC-ASPLGNMDYAYLVFLQMQNPNLFSWNTVI 95
Query: 61 RGFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RGF++ + P A L+ ML S P T+ I +A + G H ++I+LG
Sbjct: 96 RGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGL 155
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ F+ N +L++YAT + AR++F+ + DV+SW S+I G AK G+I +R++FDK
Sbjct: 156 QFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDK 215
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP KN +SW++MI GYV+ +FKEAL+ F MQ +P+ +V L A A +GAL QG
Sbjct: 216 MPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQG 275
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
WIH Y+ +N ++L+ I+ TAIIDMY KCG I A VF+ +P R + ++ S+I GLA +
Sbjct: 276 VWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVN 335
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
AI +F ++ + P+ M Y IEP ++H
Sbjct: 336 GCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKH 395
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y +VD++ RAG LE A++ ++ MPIE D + G LL+ACR++G+ ++ K E + E
Sbjct: 396 YNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELD 455
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS-GERT 454
+ +VL++NI+A + G + R M +V K PG S IEVD V EF++ G R
Sbjct: 456 PEETMGYVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEEVHEFIAGGGRL 515
Query: 455 NVLMEEIVLLL 465
+ +EI ++L
Sbjct: 516 HRKAQEIYIVL 526
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 178/469 (37%), Positives = 278/469 (59%), Gaps = 40/469 (8%)
Query: 53 TFIWNTMIRGF------AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFV 106
+F+WN +IR +++ PI ++Y +M P+ +TF F+L + + L +
Sbjct: 24 SFLWNIIIRAIVHNVSSPQRHSPI---SVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPL 80
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
G HAQ++ G + FV LL++Y++C + A+++FD S ++D+ +W S++N YAK
Sbjct: 81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAK 140
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-----FRPNHA 221
+G I AR++FD+MPE+N +SWS +INGYV +KEAL+ F MQL RPN
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
+ L+AC LGAL+QG+W+HAY+D+ +E+DI+LGTA+IDMYAKCG +E A VF+++
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 282 -PNRDVFAYTSLISGLANHDQSASAIELFMRMQL-EGVVPN------------------- 320
+DV AY+++I LA + + +LF M + + PN
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINE 320
Query: 321 -----ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
+ M E +GI P +QHYGC+VDL GR+G+++ A+ + MP+EPD + G+LL+
Sbjct: 321 GKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGS 380
Query: 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
R+ GD+ + ++ L+E + G +VLLSN+YA T +W V+ +R ME + KVPG
Sbjct: 381 RMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPG 440
Query: 436 CSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
CS +EV+GVV EFV G+ + E I +L I + L+ + D EV
Sbjct: 441 CSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 40/269 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML-----RSDFLPNNYT 90
G + +LF + R W+ +I G+ + +A L+++M + PN +T
Sbjct: 142 GLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFT 201
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFD-M 148
S +L AC L G HA + + E D VL L+ +YA C ++ A+++F+ +
Sbjct: 202 MSTVLSACGRLGALEQGKWVHAYIDKYHVE-IDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+DV +++++I A G Q+F +M + ++
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNIN--------------------- 299
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAK 267
PN VG L AC G +++G+ + ++ GI I ++D+Y +
Sbjct: 300 ---------PNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGR 350
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISG 295
G I+ A S SMP DV + SL+SG
Sbjct: 351 SGLIKEAESFIASMPMEPDVLIWGSLLSG 379
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 180/527 (34%), Positives = 291/527 (55%), Gaps = 43/527 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+++KQ+ + L +G D +I+ + SD D+ + +F L R F WNT+I
Sbjct: 28 MRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVI 87
Query: 61 RGFAE-KNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
R AE ++ + A ++ QML + PN +TF +L+ACA + L G H +++ G
Sbjct: 88 RALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFG 147
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---------RD-------VISWTSLIN 162
+FV+ LL +Y C M+ A LF +V RD V+ +++
Sbjct: 148 LVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVD 207
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN-YMQLCGFRPNHA 221
GYA+ G + AR++FD+M +++ VSW+ MI+GY Q +KEA+E F+ MQ+ PN
Sbjct: 208 GYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRV 267
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
+V L A + LG L+ G+W+H Y ++N I +D +LG+A++DMYAKCG IE A VF+ +
Sbjct: 268 TLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERL 327
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------------- 321
P +V + ++I GLA H ++ RM+ G+ P++
Sbjct: 328 PQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGR 387
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
M G++P ++HYGC+VDLLGRAG LE A++++ MP++PD+ + ALL A ++
Sbjct: 388 SFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKM 447
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H ++ +G E L++ + G +V LSN+YAS+ W+GV VR M+D ++RK PGCS
Sbjct: 448 HKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCS 507
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
IE+DGV+ EF+ + ++ ++I +L I L D +V
Sbjct: 508 WIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQV 554
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 182/532 (34%), Positives = 294/532 (55%), Gaps = 58/532 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K + + + + G + +GK+I FC+ D GDL + R+F + F++N++I
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ ++PI A L+++M+ S PN +T F+L+AC S + ++ H I+LG
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFD--------------------------------- 147
S FV N L+ +Y C + ARKLFD
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIF 180
Query: 148 -MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
+ ++V+SWTS+I+ YA+ G I +ARQ+FD+MP KN VSW++MI+ Y++ ++EAL+
Sbjct: 181 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 240
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
FN M+ P+ A +V L AC+ LG L G+ IH Y+ N + L ++IDMYA
Sbjct: 241 LFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYA 300
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
KCG + TA +F MP +++ ++ +I LA H AI+LF MQ +G +P+E
Sbjct: 301 KCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTG 360
Query: 322 -------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
M IY + ++HY C+VDLLGR G+L A +++ MP++
Sbjct: 361 LLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMK 420
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
PD V GALL ACR+HG+V++GK+ ++ L+E G++VL+SNIY ++W V+K+R
Sbjct: 421 PDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIR 480
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
+ M D ++K S IE+DG + EF+ ++ + + I +L + HL+S
Sbjct: 481 KLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRS 532
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 176/528 (33%), Positives = 281/528 (53%), Gaps = 72/528 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI S +G + +P +II FC ++GD+ + +F + F+WN MI
Sbjct: 32 MAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMI 91
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G++ P A ++Y +ML +P+ YT+ F+L+ + + G H +++LG+
Sbjct: 92 KGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFS 151
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS--------- 171
S FV N L+HLY+ + AR +FD S DV++W +I+GY +S Q
Sbjct: 152 SNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEM 211
Query: 172 ------------------------------IARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
+ R FDKMPE++ VSW+AMI+GY+QV+ F
Sbjct: 212 ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERDFVSWTAMIDGYLQVNRF 271
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
KE L F MQ +P+ +V LTACA LGAL+ G WI AY+D+N I++D +G A+
Sbjct: 272 KEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNAL 331
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
IDMY CG +E A +F++MP+RD ++T++I GLA + A+++F +M + P+E
Sbjct: 332 IDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDE 391
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
V++ MP++P++ V G+LL ACRVH D
Sbjct: 392 ---------------------------------VIKNMPVKPNSIVWGSLLGACRVHRDE 418
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
++ + + ++E ++ V+VLL NIYA+ +W + +VR+ M D ++K PGCSLIE+
Sbjct: 419 EMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEM 478
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
+G V EFV+G++ + +EI L + LK + D +EV + G
Sbjct: 479 NGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIG 526
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/470 (35%), Positives = 274/470 (58%), Gaps = 25/470 (5%)
Query: 31 SASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90
S S L + +F +Q +TF +NT+IR + PI A + QM R ++++
Sbjct: 67 SKSSTSLLHYAKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHS 126
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
F F L+ACA +F H QV++ G+ S +V+N L+H Y + + A K+FD S
Sbjct: 127 FPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESP 186
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
RDV+S+ LI+G+ K+G + AR++FD MP +++VSW+ +I G + D +EA+E F++
Sbjct: 187 QRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDF 246
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M RP++ +V L+ACA LG L++G+ IH Y++RN +++D L T ++D YAKCGC
Sbjct: 247 MMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGC 306
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
++ A +FDS ++++F + +++ GLA H +E F RM GV P+
Sbjct: 307 VDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVG 366
Query: 321 --------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
+ M +YG+ +HYGC+ DLLGRAG+++ +++++MP D
Sbjct: 367 CSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMS 426
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V LL CR+HGDV++ ++ + L+E D GV+ +L+N+YA+ E+W V +RR +
Sbjct: 427 VWSGLLGGCRIHGDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLS 486
Query: 427 DNE-VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
N V K+ G SLI++DGV EF++G+ + ++I L+L GI +H L
Sbjct: 487 SNRVVTKIAGFSLIQLDGVAHEFIAGDSLHSESDKIYLVLNGIREHQSEL 536
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/513 (35%), Positives = 284/513 (55%), Gaps = 28/513 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQ+ +H+ G F + K++ + D+ + +F ++Y F+W +I
Sbjct: 52 INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALI 111
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+A + +++ LY M R P ++TF+ +L+AC+ + +G H Q I +G
Sbjct: 112 RGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGF 171
Query: 121 SYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
D +V N L+ +Y C C+ ++FD ++RDVISWTSLI YAK G + A ++FD
Sbjct: 172 GSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDG 231
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ V+W+AM+ GY Q +EALE F MQ G + + +VG ++ACA LGA
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291
Query: 240 RWIHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
W+ +++G ++++G+A+IDMYAKCG +E A VF+ M R+V++Y+S+I G A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H + +A+ELF M + PN M E +G+ P
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
HY C+VDLLGRAG LE A +V+ MP+ P V GALL ACR+HG+ D+ + L E
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE 471
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE-VDGVVCEFVSGE 452
+ G ++LLSNIYAS +W+ V KVR+ M ++K PGCS +E G++ EF +G+
Sbjct: 472 LEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGD 531
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
++ EI L + LK L + + + VA
Sbjct: 532 MSHPKSREIKQALEDLLDRLKYLGYQPNLSSVA 564
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 185/517 (35%), Positives = 301/517 (58%), Gaps = 44/517 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG--DLSHGYRLFVCLQYRTTFIWNT 58
++ + QI + SG + D A +I+ FC+ SD+ DL + +++F + R F WNT
Sbjct: 29 IRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 88
Query: 59 MIRGFAEKNE--PIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVI 115
+IRGF+E +E + A L+ +M+ +F+ PN +TF +L+ACA T + G H +
Sbjct: 89 IIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLAL 148
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFD---------MSVNR-----DVISWTSLI 161
+ G+ +FV++ L+ +Y C M A LF M ++R +V+ W +I
Sbjct: 149 KYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMI 208
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNH 220
+GY + G AR +FDKM +++ VSW+ MI+GY Q FK+A+E F M+ RPN+
Sbjct: 209 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNY 268
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V L A + LG+L+ G W+H Y + +GI +D +LG+A+IDMY+KCG IE A VF+
Sbjct: 269 VTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFER 328
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
+P +V ++++I+G A H Q+ AI+ F +M+ GV P++
Sbjct: 329 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEG 388
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
M + G+EP ++HYGC+VDLLGR G+L+ A++ + MPI+PD+ + ALL ACR
Sbjct: 389 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACR 448
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
+H +V++GK L++ G +V LSN+YAS W+ V ++R M++ ++RK PGC
Sbjct: 449 MHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGC 508
Query: 437 SLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
S I++DGV+ EF+ + ++ +EI +L I L+
Sbjct: 509 SWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLR 545
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 256/445 (57%), Gaps = 29/445 (6%)
Query: 46 VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSC 103
+ L R F++N+MIRG+ + P +A Y ML L NNYTF +++AC +S
Sbjct: 342 INLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSS 401
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
+G + HA V+ G++ FV++ L+ Y+ M AR LFD NRDV+ WT++I+G
Sbjct: 402 KLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDG 461
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
Y K G + AR +F+ MPE+NA+SWSA++ Y +V FKE L F MQ G PN + +
Sbjct: 462 YGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVL 521
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
V LTACA LGAL QG W+H+Y + + + IL TA++DMY+KCGC+E+A S F +PN
Sbjct: 522 VSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPN 581
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------------------- 322
+D A+ ++ISG+A + + ++ELF +M G P E+
Sbjct: 582 KDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKL 641
Query: 323 ---MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACR 376
MS YG+EP +HY CLVDL+ RAGML A+K + E D V GA L ACR
Sbjct: 642 FEQMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAXLGACR 701
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
+G++++G + L + + G HVL N+Y ++VRR + + ++K PGC
Sbjct: 702 TYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEXGMKKKPGC 761
Query: 437 SLIEVDGVVCEFVSGERTNVLMEEI 461
S+IEVDG V EF++G+ ++ +I
Sbjct: 762 SIIEVDGTVEEFLAGDLSHSQAPQI 786
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 114/298 (38%), Gaps = 61/298 (20%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSAS-----------------------------DIGD 37
+ +H+ G DPF V +I F S + +GD
Sbjct: 408 VHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGD 467
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+ H LF + R W+ ++ ++ + + L+++M + +PN +L A
Sbjct: 468 VEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTA 527
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
CA L GL H+ + ++S + L+ +Y+ C C++ A F N+D +W
Sbjct: 528 CAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAW 587
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
++I+G A +G +W ++LE FN M G +
Sbjct: 588 NAMISGVAMNGD-----------------AW--------------KSLELFNKMISNGTQ 616
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETA 274
P V LTAC + +G + + N G+E ++D+ A+ G + A
Sbjct: 617 PTETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARAGMLAEA 674
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 177/510 (34%), Positives = 281/510 (55%), Gaps = 26/510 (5%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K++ H+ G + + ++ S + D++ G C + F WN MI G+
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKE--DVFSWNLMISGYN 212
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
E ++ L +M R+ P + T +L AC+ + H V E
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N L++ YA C MD A ++F RDVISWTS++ GY + G + +AR FD+MP ++
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+SW+ MI+GY++ F E+LE F MQ G P+ +V LTACA LG+L+ G WI
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+D+N I+ D+++G A+IDMY KCGC E A VF M RD F +T+++ GLAN+ Q
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
AI++F +MQ + P++ M + IEP + HYGC+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
D+LGRAG+++ A +++R+MP+ P++ V GALL A R+H D + + + ++E D+
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
V+ LL NIYA ++W + +VRR + D ++K PG SLIEV+G EFV+G+++++ EE
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEE 632
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEVATEGGS 490
I + L + + + D +E+ E G+
Sbjct: 633 IYMKLEELAQESTFAAYLPDTSELLFEAGN 662
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 179/397 (45%), Gaps = 52/397 (13%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q KQ+ S G +P K+ F + G +S+ Y+LFV + +WN MI+G
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA-DTSCLFVGLICHAQVIRLGWES 121
+++ + + LY ML+ P+++TF F+L D L G H V++ G S
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+V N L+ +Y+ C MD AR +FD DV SW +I+GY ++M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY-------------NRMK 215
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E ++E++E M+ P ++ L+AC+ + D +
Sbjct: 216 E------------------YEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKR 257
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H YV E + L A+++ YA CG ++ A +F SM RDV ++TS++ G
Sbjct: 258 VHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGN 317
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP- 360
A F +M + + + ++D RAG + ++ REM
Sbjct: 318 LKLARTYFDQMPVRDRIS----------------WTIMIDGYLRAGCFNESLEIFREMQS 361
Query: 361 --IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+ PD + + ++L AC G +++G E +++ ++++
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKN 397
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 28/281 (9%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDV-----------ISWTSLINGYAKSGQISIARQMF 177
+ + C D ++L S+ R V + W S + G+ +S A ++F
Sbjct: 37 FISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGH-----VSYAYKLF 91
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG-AL 236
K+PE + V W+ MI G+ +VD E + + M G P+ L G AL
Sbjct: 92 VKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGAL 151
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G+ +H +V + G+ ++ + A++ MY+ CG ++ A VFD DVF++ +ISG
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE-SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ +IEL + M+ V P ++ + V+ DL R +
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDK----DLCKR------VHEY 261
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
V E EP + AL+NA G++D+ S+ R +
Sbjct: 262 VSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDV 302
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 175/459 (38%), Positives = 273/459 (59%), Gaps = 26/459 (5%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN M+ G+ + K+ L+ +M + PN+ T +L AC+ L G + + I
Sbjct: 176 WNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY-KYI 234
Query: 116 RLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
G + +L N L+ ++A C MD A+ +FD NRDVISWTS++ G+A GQI +AR
Sbjct: 235 NGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLAR 294
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+ FD++PE++ VSW+AMI+GY++++ F EAL F MQ+ +P+ +V LTACA LG
Sbjct: 295 KYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLG 354
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
AL+ G W+ Y+D+N I+ D +G A+IDMY KCG + A VF M ++D F +T++I
Sbjct: 355 ALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIV 414
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIE 330
GLA + A+ +F M + P+E SM+ +GI+
Sbjct: 415 GLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIK 474
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P V HYGC+VDLLGRAG LE A +V+ MP++P++ V G+LL ACRVH +V L + +
Sbjct: 475 PNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQ 534
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
++E ++ V+VLL NIYA+ ++W + +VR+ M + ++K PGCSL+E++G V EFV+
Sbjct: 535 ILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVA 594
Query: 451 GERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
G++++ +EI L + + L + D +EV + G
Sbjct: 595 GDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLG 633
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 199/398 (50%), Gaps = 51/398 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI SH G DP ++I FC A + G + + ++F + T FIWNTMI
Sbjct: 20 MYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMI 79
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G++ N P ++Y ML S+ P+ +TF F+L+ L G + ++ G++
Sbjct: 80 KGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFD 139
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV +H+++ C +D ARK+FDM +V++W +++GY + Q ++ +F +M
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM 199
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
++ G PN +V L+AC+ L L+ G+
Sbjct: 200 EKR-------------------------------GVSPNSVTLVLMLSACSKLKDLEGGK 228
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
I+ Y++ +E ++IL +IDM+A CG ++ A SVFD+M NRDV ++TS+++G AN
Sbjct: 229 HIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIG 288
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
Q A + F ++ V + ++D R A + REM
Sbjct: 289 QIDLARKYFDQIPERDYVS----------------WTAMIDGYLRMNRFIEALALFREMQ 332
Query: 361 ---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
++PD + + ++L AC G ++LG E V++ ++++
Sbjct: 333 MSNVKPDEFTMVSILTACAHLGALELG-EWVKTYIDKN 369
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 177/509 (34%), Positives = 280/509 (55%), Gaps = 26/509 (5%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K++ H+ G + + ++ S + D++ G C + F WN MI G+
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKE--DVFSWNLMISGYN 212
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
E ++ L +M R+ P + T +L AC+ + H V E
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N L++ YA C MD A ++F RDVISWTS++ GY + G + +AR FD+MP ++
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+SW+ MI+GY++ F E+LE F MQ G P+ +V LTACA LG+L+ G WI
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+D+N I+ D+++G A+IDMY KCGC E A VF M RD F +T+++ GLAN+ Q
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
AI++F +MQ + P++ M + IEP + HYGC+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
D+LGRAG+++ A +++R+MP+ P++ V GALL A R+H D + + + ++E D+
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
V+ LL NIYA ++W + +VRR + D ++K PG SLIEV+G EFV+G+++++ EE
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEE 632
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
I + L + + + D +E+ E G
Sbjct: 633 IYMKLEELAQESTFAAYLPDTSELLFEAG 661
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 179/397 (45%), Gaps = 52/397 (13%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q KQ+ S G +P K+ F + G +S+ Y+LFV + +WN MI+G
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA-DTSCLFVGLICHAQVIRLGWES 121
+++ + + LY ML+ P+++TF F+L D L G H V++ G S
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+V N L+ +Y+ C MD AR +FD DV SW +I+GY ++M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY-------------NRMK 215
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E ++E++E M+ P ++ L+AC+ + D +
Sbjct: 216 E------------------YEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKR 257
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H YV E + L A+++ YA CG ++ A +F SM RDV ++TS++ G
Sbjct: 258 VHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGN 317
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP- 360
A F +M + + + ++D RAG + ++ REM
Sbjct: 318 LKLARTYFDQMPVRDRIS----------------WTIMIDGYLRAGCFNESLEIFREMQS 361
Query: 361 --IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+ PD + + ++L AC G +++G E +++ ++++
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKN 397
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 28/281 (9%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDV-----------ISWTSLINGYAKSGQISIARQMF 177
+ + C D ++L S+ R V + W S + G+ +S A ++F
Sbjct: 37 FISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGH-----VSYAYKLF 91
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG-AL 236
K+PE + V W+ MI G+ +VD E + + M G P+ L G AL
Sbjct: 92 VKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGAL 151
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G+ +H +V + G+ ++ + A++ MY+ CG ++ A VFD DVF++ +ISG
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE-SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ +IEL + M+ V P ++ + V+ DL R +
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDK----DLCKR------VHEY 261
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
V E EP + AL+NA G++D+ S+ R +
Sbjct: 262 VSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDV 302
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 184/484 (38%), Positives = 271/484 (55%), Gaps = 30/484 (6%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFI--WNTMIRGFAEKNEPIKAFALY 76
D F + +I F ++ G L Y +F ++ I WN+M+ GF + P KA L+
Sbjct: 274 DVFVLNSLIHFYASC--GHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLF 331
Query: 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136
++M PN T ++ ACA T L +G + R V N + ++ C
Sbjct: 332 ERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKC 391
Query: 137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV 196
++ AR LFD RDV+SWT++I+GYAK + IAR +FD MP K+ +W+ +I+GY
Sbjct: 392 GEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYE 451
Query: 197 QVDLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254
Q KEAL F +QL G RP+ ++ L+ACA LGA+D G WIH Y+ + I+L+
Sbjct: 452 QSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLN 511
Query: 255 IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314
L T++IDMY+K G +E A VF S+ N+DVF ++++I+GLA H + +AIELF+ MQ
Sbjct: 512 RNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQE 571
Query: 315 EGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
V PN + M +YG+ P +HY C+VD+LGRAG LE
Sbjct: 572 TQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLE 631
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A K + MP+ P V GALL AC +HG+++L ++ L+E + G +VLLSN+YA
Sbjct: 632 EALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYA 691
Query: 411 STEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDK 470
T W GV ++R+ M D+ ++K GCS IE+DG V EF+ G+ + L +I L I
Sbjct: 692 KTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMA 751
Query: 471 HLKS 474
L+S
Sbjct: 752 RLRS 755
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 190/392 (48%), Gaps = 55/392 (14%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+KQI + + + L DP+A ++ + S L + ++F + + WN +IR
Sbjct: 153 KQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIR 212
Query: 62 GFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
A ++PI++ ++ +ML S F PN +TF +++A A+ C VG H I+ +
Sbjct: 213 ALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFG 272
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDM--SVNRDVISWTSLINGYAKSGQISIARQMFD 178
FVLN L+H YA+C +D A +F+M N+D++SW S++ G+ + G
Sbjct: 273 DDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGG---------- 322
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
P+K AL+ F M+ G PN +V ++ACA L
Sbjct: 323 -YPDK--------------------ALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTL 361
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GR + Y+DRN + +++ + A IDM+ KCG +E A +FD+M RDV ++T++I G A
Sbjct: 362 GRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAK 421
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+ A ++F M P + + + L+ ++G + A + RE
Sbjct: 422 MSEHGIARDIFDSM------PRKD----------IPAWNVLISGYEQSGRPKEALAIFRE 465
Query: 359 MPI-----EPDNYVLGALLNACRVHGDVDLGK 385
+ + PD L + L+AC G +D+G+
Sbjct: 466 LQLTKSGARPDQVTLLSTLSACAQLGAMDIGE 497
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 184/518 (35%), Positives = 294/518 (56%), Gaps = 41/518 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ +++ + SG +D + ++ +++G + + ++F + R WN +I
Sbjct: 148 VREGEKVYGFVVKSGLEFDTYVCNSLMDM--YAEVGRVQNLRQVFEEMPQRDVVSWNVLI 205
Query: 61 RGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
G+ + A ++++M + S PN T L AC L +G H R
Sbjct: 206 SGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIH----RYVR 261
Query: 120 ESYDFVL---NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
E F + N L+ +Y C + AR++F+ + VI WTS+++GY GQ+ AR++
Sbjct: 262 EQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEAREL 321
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F++ P ++ V W+AMINGYVQ + F +A+ F MQ+ P+ +V LT CA LG L
Sbjct: 322 FERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTL 381
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+QG+WIH Y+D N I +D ++GTA+I+MYAKCG IE + +F+ + +D ++TS+I GL
Sbjct: 382 EQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGL 441
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A + +++ A+ELF M GV P++ SM+ +Y IEP
Sbjct: 442 AMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPK 501
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL---GALLNACRVHGDVDLGKETVE 389
++HYGCL+DLLGRAG L+ A++++ + P + ++ GALL+ACR HG+V++G+ +
Sbjct: 502 LEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAK 561
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
LV VH LL+NIYAS ++W V KVRR M+D V+KVPGCS +EV+G+V EF+
Sbjct: 562 RLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFL 621
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
G+ ++ M EI +L I K L L D NE+ E
Sbjct: 622 VGDASHPEMREIYSMLDSIAKPLLGL----DENEMEGE 655
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 181/388 (46%), Gaps = 50/388 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +KQIQ+ + +G + K + C+ IG+L + R+F + FI+N +I
Sbjct: 45 MQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVI 104
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F + KA L++Q+ P+N+T+ F+ +A + G + V++ G E
Sbjct: 105 KAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLE 164
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N L+ +YA + R++F+ RDV+SW LI+GY K + A +F +M
Sbjct: 165 FDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRM 224
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+++++ RPN A +V L+AC L L+ G+
Sbjct: 225 QQQSSL------------------------------RPNEATVVSTLSACIALKMLELGK 254
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH YV R + I +G A++DMY KCG + A +F+ MP + V +TS++SG N
Sbjct: 255 EIHRYV-REQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCG 313
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
Q A ELF R + VV +M Y VQ + A + REM
Sbjct: 314 QLDEARELFERSPVRDVVLWTAMINGY-----VQF-----------NRFDDAVALFREMQ 357
Query: 361 IE---PDNYVLGALLNACRVHGDVDLGK 385
I+ PD + L ALL C G ++ GK
Sbjct: 358 IKRVSPDRFTLVALLTGCAQLGTLEQGK 385
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 174/454 (38%), Positives = 259/454 (57%), Gaps = 25/454 (5%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD-TSCLFVGLIC 110
T +WN +I G +A + M R+ P T+ +L AC T + +G+
Sbjct: 108 TPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQV 167
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H +V+ G V N L+ +YA C M+ A KLFD R V+SWTSL++G + G++
Sbjct: 168 HGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRV 227
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
AR +F +MPE++ VSW+AMI+GYVQ F+EALE F MQ + +V +TAC
Sbjct: 228 DEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITAC 287
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
A LGAL+ G W+ Y+ R GI++D +G A+IDMY+KCG IE A VF M +RD F +T
Sbjct: 288 AQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWT 347
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEI 326
++I GLA + AIE+F RM P+E SM E
Sbjct: 348 AIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRET 407
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I P V HYGC++DL GRAG + A + +MP+ P++ + G LL ACRVHG+ ++G+
Sbjct: 408 YNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL 467
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
E L++ ++ V+ LLSNIYA +W V ++R + + ++K PGCSLIE++G++
Sbjct: 468 VTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIH 527
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
EFV+G++++ + +EI L I L ++ +F D
Sbjct: 528 EFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPD 561
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 136/318 (42%), Gaps = 51/318 (16%)
Query: 72 AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
A A Y +ML +P+ YTF +L+A A S HA V++ G
Sbjct: 27 AVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFG------------- 73
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+ R+ TSL+ YA G + AR + + V W+A+
Sbjct: 74 ------------------MGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNG 250
I+G+ + F EA F M G P V L+AC G + G +H V +G
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSG 175
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+ D+ + A++DMYA+C +E+A +FD M R V ++TSL+SGL + A +LF
Sbjct: 176 VLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFG 235
Query: 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYV 367
RM V + ++D +A A ++ REM + D +
Sbjct: 236 RMPERDTVS----------------WTAMIDGYVQAARFREALEMFREMQCSNVSADEFT 279
Query: 368 LGALLNACRVHGDVDLGK 385
+ +++ AC G +++G+
Sbjct: 280 MVSVITACAQLGALEMGE 297
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 134/321 (41%), Gaps = 40/321 (12%)
Query: 17 LWDPFAVGKIIGFCSA----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKA 72
L+D V ++ + S + +G + LF + R T W MI G+ + +A
Sbjct: 202 LFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREA 261
Query: 73 FALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132
++++M S+ + +T ++ ACA L +G + R G + FV N L+ +
Sbjct: 262 LEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDM 321
Query: 133 YATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI 192
Y+ C ++ A +F +RD +WT++I G A +
Sbjct: 322 YSKCGSIERALDVFKDMHHRDKFTWTAIILGLA--------------------------V 355
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGI 251
NGY + EA+E F+ M P+ +G LTAC G +D+GR + + + I
Sbjct: 356 NGYGE-----EAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNI 410
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASA---IE 307
+++ IID++ + G I A D MP + + +L++ H S E
Sbjct: 411 APNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTE 470
Query: 308 LFMRMQLEGVVPNESMSEIYG 328
++M E +S IY
Sbjct: 471 RLLQMDPENSTVYTLLSNIYA 491
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 171/468 (36%), Positives = 263/468 (56%), Gaps = 25/468 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G ++F +Q W +I + ++P KAF+++ + S P+++
Sbjct: 48 TQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVV 107
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+ AC L G I H V R S V N L+ +Y+ ++ A +F +
Sbjct: 108 GAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIK 167
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV SWTSL+NG+ K I AR++FD+MP +N+VSW+AMI GYVQ ++ LE F M+
Sbjct: 168 DVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMR 227
Query: 213 LCGFR-PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G P IV L+ CA +GA D G +H YV++ ++LD+ + A++DMYAK G +
Sbjct: 228 AEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGAL 287
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
A +F MP RDVF++T++ISGLA H + A+E F M GVVPNE
Sbjct: 288 VLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSAC 347
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
M + +GI+P +QHYGC+VDLLGRAG+L AK+++ MPI+PD+ +
Sbjct: 348 SHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVI 407
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
+LL+AC VHG++ L + + ++E D +GV++LL NIY S +W K R+ M D
Sbjct: 408 WRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRD 467
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
V+K PGCS +EV+GVV EF++ + + + ++ +L I + +K L
Sbjct: 468 RRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMKDL 515
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 129/254 (50%), Gaps = 13/254 (5%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
L+N Y + G A+++F+ + + VSW+ +I+ Y+ +A F+++ G RP+
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
+VGA++AC L GR +H V R + D I+G A+IDMY++ G IE ACSVF
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339
+M +DV ++TSL++G + +A +F M + V +M I G G
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAM--ITGYVQGE------ 214
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
V + G LE +++ E P + A+L+ C G DLG + + +LD +
Sbjct: 215 VPIPG----LELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLD 270
Query: 400 -GVHVLLSNIYAST 412
V+ L ++YA +
Sbjct: 271 VTVNNALMDMYAKS 284
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 171/489 (34%), Positives = 277/489 (56%), Gaps = 25/489 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK +++I +H+ +G A +++ FC++S GD+++ Y LF + + WNT+I
Sbjct: 38 MKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSS-GDINYAYLLFTTIPSPNLYCWNTII 96
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RGF+ + P A +L+ ML S LP T+ + +A A + G H +V++LG E
Sbjct: 97 RGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLE 156
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
F+ N ++++YA + AR++FD V+ DV++ S+I G AK G++ +R++FD M
Sbjct: 157 KDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNM 216
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P + V+W++MI+GYV+ EALE F MQ P+ +V L+ACA LGAL G
Sbjct: 217 PTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGE 276
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H YV R EL++I+ TAIIDMY KCG I A VF++ P R + + S+I GLA +
Sbjct: 277 WVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNG 336
Query: 301 QSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHY 336
AIE F +++ + P+ M Y IEP ++HY
Sbjct: 337 YERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHY 396
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+V++LG+A +LE A+++++ MP++ D + G+LL++CR HG+V++ K + + E +
Sbjct: 397 TCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNP 456
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
++L+SN+ A++ Q+ + R M + K PGCS IE+ G V EF++G R +
Sbjct: 457 SDASGYLLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSIELYGEVHEFLAGGRLHP 516
Query: 457 LMEEIVLLL 465
EI LL
Sbjct: 517 KAREIYYLL 525
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 175/462 (37%), Positives = 262/462 (56%), Gaps = 25/462 (5%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W+ M+ + + +A L+ +M S + L AC+ + +G
Sbjct: 233 RDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWV 292
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DVISWTSLINGYAKSGQ 169
H +++G E Y + N L+HLY++C + AR++FD D+ISW S+I+GY + G
Sbjct: 293 HGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGS 352
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
I A +F MPEK+ VSWSAMI+GY Q + F EAL F MQL G RP+ +V A++A
Sbjct: 353 IQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISA 412
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
C L LD G+WIHAY+ RN +++++IL T +IDMY KCGC+E A VF +M + V +
Sbjct: 413 CTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTW 472
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSE 325
++I GLA + ++ +F M+ G VPNE SM
Sbjct: 473 NAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIH 532
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+ IE ++HYGC+VDLLGRAG+L+ A++++ MP+ PD GALL ACR H D ++G+
Sbjct: 533 EHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGE 592
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
L++ DH+G HVLLSNIYAS W V ++R M + V K PGCS+IE +G V
Sbjct: 593 RLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTV 652
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
EF++G++T+ + +I +L + LK + +EV+ +
Sbjct: 653 HEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLD 694
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 194/388 (50%), Gaps = 67/388 (17%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCS-ASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ KQ+ S ++G + DP+A ++I F S ++ + + R+F L+ TF WNT++
Sbjct: 17 RHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIM 76
Query: 61 RG-FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R +N P +A YK L S P++YT+ +L+ CA F G HA + G+
Sbjct: 77 RAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGF 136
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V N L++LYA C + AR++F+ S D++SW +L+ GY ++G++ A ++F+
Sbjct: 137 DGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEG 196
Query: 180 MPEKNA---------------------------------VSWSAMINGYVQVDLFKEALE 206
MPE+N VSWSAM++ Y Q ++ +EAL
Sbjct: 197 MPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALV 256
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-------------- 252
F M+ G + +V AL+AC+ + ++ GRW+H + G+E
Sbjct: 257 LFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYS 316
Query: 253 ------------------LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
LD+I ++I Y +CG I+ A +F SMP +DV +++++IS
Sbjct: 317 SCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMIS 376
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNES 322
G A H+ + A+ LF MQL GV P+E+
Sbjct: 377 GYAQHECFSEALALFQEMQLHGVRPDET 404
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + + W+ MI G+A+ +A AL+++M P+ +
Sbjct: 351 GSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAI 410
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L +G HA + R + + L+ +Y C C++ A ++F + V
Sbjct: 411 SACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVS 470
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++I G A +G + + MF M + V
Sbjct: 471 TWNAVILGLAMNGSVEQSLNMFADMKKTGTV----------------------------- 501
Query: 216 FRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
PN +G L AC +G ++ GR + ++ + + IE +I ++D+ + G ++ A
Sbjct: 502 --PNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEA 559
Query: 275 CSVFDSMP-NRDVFAYTSLISGLANH 299
+ DSMP DV + +L+ H
Sbjct: 560 EELIDSMPMAPDVATWGALLGACRKH 585
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 104/232 (44%), Gaps = 24/232 (10%)
Query: 132 LYATCNCMDPARKLFDMSVNRDVIS----WTSLINGYAKSGQI---SIARQMFDKMPEKN 184
L +C C ++L ++ +I+ + LIN + S + + ++F+ + N
Sbjct: 9 LLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPN 68
Query: 185 AVSWSAMINGYVQV-DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+W+ ++ ++ + + +AL H+ +P+ L CA + +GR +H
Sbjct: 69 TFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLH 128
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
A+ +G + D+ + ++++YA CG + +A VF+ P D+ ++ +L++G +
Sbjct: 129 AHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVE 188
Query: 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
A +F M + + SM + L GR G +E A+++
Sbjct: 189 EAERVFEGMPERNTIASNSM----------------IALFGRKGCVEKARRI 224
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 184/492 (37%), Positives = 270/492 (54%), Gaps = 65/492 (13%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
+ S + VS TL +AV +I SA + D S R W TMI+G+ +
Sbjct: 156 LASDVYVSNTLMRMYAVCDVIR--SARKVFDTS---------PQRDLVSWTTMIQGYVKM 204
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
+ L+ +M + + T +L +CA RLG D L
Sbjct: 205 GFAREGVGLFFEMCGENLQADGMTLVIVLSSCA----------------RLG----DLRL 244
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
LH Y N +VN DV +L++ Y K G + AR++F +MP KN V
Sbjct: 245 GRKLHRYIIRNS----------NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVV 294
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
SW++MI+G Q FKE+L F MQ G +P+ +V L +CA LG L+ G+W+HAY+
Sbjct: 295 SWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYL 354
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
DRN I D +G A++DMYAKCG I+ AC VF +M +DV++YT++I GLA H Q A+
Sbjct: 355 DRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKAL 414
Query: 307 ELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDL 342
+LF M G+ P+ E MS IY + P ++HYGC+VDL
Sbjct: 415 DLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDL 474
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402
LGRAG++ A++ +R MPIEPD +VLGALL AC++HG V+LG+ ++ + + +G +
Sbjct: 475 LGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAY 534
Query: 403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIV 462
VL+SNIY+S +W K+R+ M++ + K PGCS IE+DGV+ EF G++++ ++EI
Sbjct: 535 VLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIY 594
Query: 463 LLLFGIDKHLKS 474
LL I HLK+
Sbjct: 595 KLLDEIMSHLKN 606
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 170/329 (51%), Gaps = 43/329 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFA----VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIW 56
+K +KQI H ++ T+ P A ++ C+ S D + L L+ ++
Sbjct: 35 IKGLKQI--HASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLY 92
Query: 57 NTMIRGFA-EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
N +IRG A N+ I+ +YKQML +P+NYT F+L+ACA++ + G H Q I
Sbjct: 93 NAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAI 152
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
++G S +V N L+ +YA C+ I AR+
Sbjct: 153 KMGLASDVYVSNTLMRMYAVCDV-------------------------------IRSARK 181
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG--FRPNHAGIVGALTACAFL 233
+FD P+++ VSW+ MI GYV++ +E + F ++CG + + +V L++CA L
Sbjct: 182 VFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLF--FEMCGENLQADGMTLVIVLSSCARL 239
Query: 234 GALDQGRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
G L GR +H Y+ RN + LD+ +G A++DMY KCG A VF MP ++V ++ S+
Sbjct: 240 GDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSM 299
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE 321
ISGLA Q ++ +F +MQ GV P++
Sbjct: 300 ISGLAQKGQFKESLYMFRKMQRLGVKPDD 328
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 136/369 (36%), Gaps = 97/369 (26%)
Query: 80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
L DF P+ +F L+ C L HA +I+ S D L L A C
Sbjct: 14 LPHDFNPHKLSFLSTLQTCKSIKGLKQ---IHASIIKT-MPSPDAQLTISTRLSALCAQS 69
Query: 140 DPARKLFDMSV-----NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
P + +S+ ++ + ++I G A S SI
Sbjct: 70 LPIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSI---------------------- 107
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254
E L + M G P++ I L ACA A+ +G +H + G+ D
Sbjct: 108 --------EGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASD 159
Query: 255 IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-- 312
+ + ++ MYA C I +A VFD+ P RD+ ++T++I G + + LF M
Sbjct: 160 VYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCG 219
Query: 313 ---QLEG---VVPNESMSEIYGIEPGVQHY----------------GCLVDLLGRAGMLE 350
Q +G V+ S + + + G + + LVD+ + G
Sbjct: 220 ENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDAN 279
Query: 351 AAKKVVREMP----------------------------------IEPDNYVLGALLNACR 376
A+KV +EMP ++PD+ L A+LN+C
Sbjct: 280 FARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCA 339
Query: 377 VHGDVDLGK 385
G ++LGK
Sbjct: 340 NLGVLELGK 348
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/455 (35%), Positives = 265/455 (58%), Gaps = 29/455 (6%)
Query: 48 LQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL--- 104
L R+ + + +IR A P A LY ++R+ P +T +L++ A + +
Sbjct: 48 LLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGA 107
Query: 105 -FVGLICHAQVIRLGWESYDFVLNGLLHLYA-TCNCMDPARKLFDMSVNRDVISWTSLIN 162
+ L HA +RLG + V N L+ ++A + A L S D ++ +LI
Sbjct: 108 RRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLIT 167
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
+A++G+++ AR +FD+MPE+NAVSWSAM+NGYVQ +EAL F+ MQ G RP+
Sbjct: 168 AHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTV 227
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+VG L ACA LGAL+QG+W+H Y+ N I + + LGTA++DMYAKCG ++ VF+ M
Sbjct: 228 LVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMK 287
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+++V A+T++I GLA H + + ++ LF +M+ GV P++
Sbjct: 288 DKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRE 347
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM YGI+P ++HYGC+VDLL R G+L A+ +V +MP++PD + GAL+ CR H
Sbjct: 348 LFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFH 407
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
+V+L + ++ +E D G +VLL NIY+++ + ++R M + V K PGCS
Sbjct: 408 KNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSN 467
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+E+ GV+ +F+ G+ ++ +++I+ + ID ++
Sbjct: 468 VEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIR 502
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 44/182 (24%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ G +F ++ + W TMI+G A + L+ QM S P++ F L
Sbjct: 274 GEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGAL 333
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--- 152
AC T GL+ D R+LF+ VN
Sbjct: 334 CACTHT-----GLV------------------------------DKGRELFNSMVNNYGI 358
Query: 153 --DVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMING---YVQVDLFKEALE 206
+ + +++ A++G +S AR M +KMP K +A+ W A++ G + V+L + ++
Sbjct: 359 KPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIK 418
Query: 207 HF 208
H+
Sbjct: 419 HW 420
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 169/494 (34%), Positives = 275/494 (55%), Gaps = 31/494 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++K+I +H+ F V K++ C+ G+ + LF + F++N MI
Sbjct: 1 MVELKKIHAHVVKFSLSXSSFLVTKMVDMCNHH--GETEYANLLFKRVADPNAFLYNAMI 58
Query: 61 RGFAEKNEPIKAFALYKQML-----RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
R + I A ++KQML + P+ +TF F+++ CA C +G H
Sbjct: 59 RAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAF 118
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G +S + N L+ +Y C+ +D A ++F+ RD +SW +LI+G+ + GQ+ AR
Sbjct: 119 KFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARA 178
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F+++ +K SW+A+++GY ++ ALE F MQ+ + +V L ACA LGA
Sbjct: 179 IFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGA 238
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ G+WIH Y D+ G DI + A+I++YAK G ++ +F M RDV +++++I G
Sbjct: 239 LELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVG 298
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
LANH ++ AIELF MQ V PN ESM IEP
Sbjct: 299 LANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEP 358
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
GV+HYGCLV+LLG +G L+ A +++++MP++PD+ + G L ++CR HG++++ +E L
Sbjct: 359 GVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHL 418
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+E D G ++ LSN+YA +W+GV ++R+ M + K PGCS IEVD +V E+ SG
Sbjct: 419 LELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVDNMVQEYASG 478
Query: 452 ERTNVLMEEIVLLL 465
+ + + I +L
Sbjct: 479 DDSKPFSKAIYRVL 492
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 262/452 (57%), Gaps = 29/452 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLF----V 106
R+ + N +IR A P A LY +LR+ P +T +L++ A + + +
Sbjct: 169 RSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGL 228
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYA-TCNCMDPARKLFDMSVNRDVISWTSLINGYA 165
L HA ++LG + V N L+ ++A + A L + + D ++ +LI YA
Sbjct: 229 ALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYA 288
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++G+++ AR +FD+MP +NAVSWSAM+NGYVQ +EAL F MQ G RP+ +VG
Sbjct: 289 RAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVG 348
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
L ACA LG L+QG+W+H Y+ N I + + LGTA++DMYAKCG ++ A VF M ++
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------E 321
V A+T++I GLA H + + A+ELF +M+ GV P+ +
Sbjct: 409 VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFD 468
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
SM YGI+P ++HYGC+VDLL R G+L A+++V +MP++PD + GAL+ CR H +V
Sbjct: 469 SMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNV 528
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
+L + V+ +E D G +VLL NIYA++ + ++R M + V K PGCS +E+
Sbjct: 529 ELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEI 588
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
GV+ +F+ G+ ++ +EEI+ ID ++
Sbjct: 589 KGVIHQFIVGDLSHPFIEEILSKWDEIDSRIR 620
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 44/182 (24%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ +F ++ + W TMI+G A +A L+ QM R P++ F L
Sbjct: 392 GEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGAL 451
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--- 152
AC T GL+ D R+LFD V +
Sbjct: 452 CACTHT-----GLV------------------------------DKGRELFDSMVRKYGI 476
Query: 153 --DVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMING---YVQVDLFKEALE 206
+ + +++ A++G ++ AR+M +KMP K +A+ W A++ G + V+L + ++
Sbjct: 477 KPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVK 536
Query: 207 HF 208
H+
Sbjct: 537 HW 538
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 181/512 (35%), Positives = 290/512 (56%), Gaps = 31/512 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ QIKQ ++L + + P K F + L++ ++LF + FI+NTMI
Sbjct: 192 INQIKQTHANLITTAQITLPVIANK---FLKNVALASLTYAHKLFDQIPQPDLFIYNTMI 248
Query: 61 RGFA-EKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+ + + + + A+++ ++R S + PN Y+F F AC + C+ G +++G
Sbjct: 249 KSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVG 308
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ FV+N L+ ++ ++ AR +FD +V+RD SW ++I Y SG + +A+++FD
Sbjct: 309 LDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFD 368
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M E++ VSWS +I GYVQV F EAL+ F+ M +PN +V AL AC+ L ALDQ
Sbjct: 369 EMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQ 428
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF-DSMPNRDVFAYTSLISGLA 297
G+WIH Y+ R+ I+++ L ++IDMYAKCG I++A SVF + R V+ + ++I G A
Sbjct: 429 GKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFA 488
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H + AI +F +M++E V PN E M+ YGI P +
Sbjct: 489 MHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEI 548
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLL R+G L+ +++++ MP+ PD + GALLNACR++ D++ G + E
Sbjct: 549 EHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKE 608
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR-KVPGCSLIEVDGVVCEFVSGE 452
+H G +VLL NIY+++ +WN VR E N R K+PG S IE++GV EF+ G+
Sbjct: 609 IDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGD 668
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
R++ EI L + LK + + EV
Sbjct: 669 RSHPQSREIYSFLDEMISKLKIAGYVPELGEV 700
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 171/509 (33%), Positives = 284/509 (55%), Gaps = 36/509 (7%)
Query: 1 MKQIKQIQSHLTVSGTLW---DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
++++K+ + + S TL + + +++ CS S G S+ +F ++ +N
Sbjct: 31 LRELKKTHTQILKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKNPDLRAYN 90
Query: 58 TMIRGF-----AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
MIR + + KA LYKQM D +PN TF F+L+ C G H
Sbjct: 91 IMIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGATGQAIHT 150
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
QVI+ G+ +V N L+ LY + ARK+FD + DV++W S++ G ++G + +
Sbjct: 151 QVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDM 210
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG---FRPNHAGIVGALTA 229
A +F KM +N ++W+++I G Q KE+LE F+ MQ+ +P+ I L+A
Sbjct: 211 AMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSA 270
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGA+D G+W+H Y+ RNGIE D+++GTA+++MY KCG ++ A +F+ MP +D A+
Sbjct: 271 CAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAW 330
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
T +IS A H A F+ M+ GV PN + M
Sbjct: 331 TVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKR 390
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+Y IEP V HY C+VD+L RA + + ++ ++R MP++PD YV GALL C++HG+V+LG+
Sbjct: 391 VYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVELGE 450
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV-RKVPGCSLIEVDGV 444
+ V L++ + +V +IYA ++ +++R M++ + +K+PGCS+IE++G
Sbjct: 451 KVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCSMIEINGE 510
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
V EF +G + + M+E+VL+L G+ +K
Sbjct: 511 VQEFSAGGSSELPMKELVLVLNGLSNEMK 539
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 180/500 (36%), Positives = 277/500 (55%), Gaps = 28/500 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QIKQ+ +H+ +G + + K+I + D+ S+ +F + Y F+W MIRG
Sbjct: 57 QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+A + ++ Y +M R P ++TFS + +AC + +G HAQ I +G +
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176
Query: 123 D-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
D +V N ++ LY C + ARK+FD RDV+SWT LI YAK G + A +FD +P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
K+ V+W+AM+ GY Q KEALE+F MQ G + + G ++ACA LGA+ W
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296
Query: 242 IHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
I +R+G ++++G+A+IDMY+KCG + A VF+ M R+VF+Y+S+I G A H
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
++ SA++LF M + PN+ M + +G+ P H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y C+VDLLGRAG LE A +V+ MP+EP+ V GALL ACR+HG+ D+ + L +
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE-VDGVVCEFVSGERT 454
+ G ++LLSNIYAS +W V K+R+ + + +K PGCS E +G + +F +G+ T
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536
Query: 455 NVLMEEIVLLLFGIDKHLKS 474
+ EI L + + L+S
Sbjct: 537 HPRSSEIRQALKQLIERLRS 556
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 182/545 (33%), Positives = 294/545 (53%), Gaps = 71/545 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K + + + + G + +GK+I FC+ D GDL + R+F + F++N++I
Sbjct: 127 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 186
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ ++PI A L+++M+ S PN +T F+L+AC S + ++ H I+LG
Sbjct: 187 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 246
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFD--------------------------------- 147
S FV N L+ +Y C + ARKLFD
Sbjct: 247 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMY 306
Query: 148 --------------MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
+ ++V+SWTS+I+ YA+ G I +ARQ+FD+MP KN VSW++MI+
Sbjct: 307 AKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMIS 366
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
Y++ ++EAL+ FN M+ P+ A +V L AC+ LG L G+ IH Y+ N
Sbjct: 367 CYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAY 426
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ L ++IDMYAKCG + TA +F MP +++ ++ +I LA H AI+LF MQ
Sbjct: 427 GVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQ 486
Query: 314 LEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGML 349
+G +P+E M IY + ++HY C+VDLLGR G+L
Sbjct: 487 ADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLL 546
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409
A +++ MP++PD V GALL ACR+HG+V++GK+ ++ L+E G++VL+SNIY
Sbjct: 547 GEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIY 606
Query: 410 ASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGID 469
++W V+K+R+ M D ++K S IE+DG + EF+ ++ + + I +L +
Sbjct: 607 WEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLT 666
Query: 470 KHLKS 474
HL+S
Sbjct: 667 DHLRS 671
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 262/452 (57%), Gaps = 29/452 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLF----V 106
R+ + N +IR A P A LY +LR+ P +T +L++ A + + +
Sbjct: 169 RSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGL 228
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYA-TCNCMDPARKLFDMSVNRDVISWTSLINGYA 165
L HA ++LG + V N L+ ++A + A L + + D ++ +LI YA
Sbjct: 229 ALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYA 288
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++G+++ AR +FD+MP +NAVSWSAM+NGYVQ +EAL F MQ G RP+ +VG
Sbjct: 289 RAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVG 348
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
L ACA LG L+QG+W+H Y+ N I + + LGTA++DMYAKCG ++ A VF M ++
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------E 321
V A+T++I GLA H + + A+ELF +M+ GV P+ +
Sbjct: 409 VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFD 468
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
SM YGI+P ++HYGC+VDLL R G+L A+++V +MP++PD + GAL+ CR H +V
Sbjct: 469 SMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNV 528
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
+L + V+ +E D G +VLL NIYA++ + ++R M + V K PGCS +E+
Sbjct: 529 ELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEI 588
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
GV+ +F+ G+ ++ +EEI+ ID ++
Sbjct: 589 KGVIHQFIVGDLSHPFIEEILSKWDEIDSRIR 620
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 44/182 (24%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ +F ++ + W TMI+G A +A L+ QM R P++ F L
Sbjct: 392 GEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGAL 451
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--- 152
AC T GL+ D R+LFD V +
Sbjct: 452 CACTHT-----GLV------------------------------DKGRELFDSMVRKYGI 476
Query: 153 --DVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMING---YVQVDLFKEALE 206
+ + +++ A++G ++ AR+M +KMP K +A+ W A++ G + V+L + ++
Sbjct: 477 KPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVK 536
Query: 207 HF 208
H+
Sbjct: 537 HW 538
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 177/552 (32%), Positives = 294/552 (53%), Gaps = 63/552 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI SH G DP ++I FC A + G++++ +++F + + + FIWNTMI
Sbjct: 20 MYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMI 79
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G+++ + P ++Y ML S+ P+ +TF F L+ L G ++ G++
Sbjct: 80 KGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFD 139
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM---- 176
S FV +H+++ C +D A K+FDM +V++W +++GY + Q I++ +
Sbjct: 140 SNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLS 199
Query: 177 ---------------------------------------FDKMPEKNAVSWSAMINGYVQ 197
FD M ++ VSW+AMI+GY++
Sbjct: 200 ACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLR 259
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
++ F AL F MQ+ +P+ +V L ACA LGAL+ G W+ +D+N + D +
Sbjct: 260 MNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFV 319
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
G A++DMY KCG + A VF M +D F +T++I GLA + A+ +F M V
Sbjct: 320 GNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASV 379
Query: 318 VPNE--------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
P+E +M+ +GI+P V HYGC+VDLLG G LE A +V+
Sbjct: 380 TPDEITYIGVLCACMVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIV 439
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP++P++ V G+ L ACRVH +V L + ++E ++ V+VLL NIYA++++W
Sbjct: 440 NMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWEN 499
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+ +VR+ M + ++K PGCSL+E++G V EFV+G++++ +EI L + + L +
Sbjct: 500 LCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGY 559
Query: 478 FDDGNEVATEGG 489
D +EV + G
Sbjct: 560 SPDTSEVFLDLG 571
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 279/471 (59%), Gaps = 31/471 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ ++I + + +G +DP+ ++ +++G + ++F + R WN MI
Sbjct: 124 VREGEKIHAFVVKTGLEFDPYVCNSLMDM--YAELGLVEGFTQVFEEMPERDAVSWNIMI 181
Query: 61 RGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
G+ +A +Y++M + S+ PN T L ACA L +G H +
Sbjct: 182 SGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAN-EL 240
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ + N LL +Y C C+ AR++FD + ++V WTS++ GY GQ+ AR +F++
Sbjct: 241 DLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFER 300
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
P ++ V W+AMINGYVQ + F++A+ F MQ+ G P+ +V LT CA LGAL+QG
Sbjct: 301 SPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG 360
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WIH Y+D N I++D ++ TA+I+MYAKCGCIE + +F+ + + D ++TS+I GLA +
Sbjct: 361 KWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMN 420
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+++ A+ELF MQ G+ P++ SMS IY IEP ++H
Sbjct: 421 GKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEH 480
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL---GALLNACRVHGDVDLGKETVESLV 392
YGC +DLLGRAG+L+ A+++V+++P + + ++ GALL+ACR +G++D+G+ +L
Sbjct: 481 YGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALA 540
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ +H LL++IYAS ++W V KVR M+D ++KVPG S IEVDG
Sbjct: 541 KVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 186/386 (48%), Gaps = 46/386 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQIQ+H+ G D + K++ F S +GD ++ R+F + + + FI+N MI
Sbjct: 21 MSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F ++ A +L++Q+ P+NYT+ ++L+ + G HA V++ G E
Sbjct: 81 KAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLE 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N L+ +YA ++ ++F+ RD +SW +I
Sbjct: 141 FDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMI------------------- 181
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQG 239
+GYV+ F+EA++ + MQ+ +PN A +V L+ACA L L+ G
Sbjct: 182 ------------SGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELG 229
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH Y+ N ++L I+G A++DMY KCGC+ A +FD+M ++V +TS+++G
Sbjct: 230 KEIHDYI-ANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVIC 288
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
Q A LF R VV +M Y H+ + L G +
Sbjct: 289 GQLDQARYLFERSPSRDVVLWTAMINGY---VQFNHFEDAIALFGEMQI----------R 335
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGK 385
+EPD +++ LL C G ++ GK
Sbjct: 336 GVEPDKFIVVTLLTGCAQLGALEQGK 361
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 100/200 (50%), Gaps = 7/200 (3%)
Query: 130 LHLYATCNCMDPARKL------FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ L +C M +++ F + +RD+++ + + G + A ++F+ +
Sbjct: 12 ISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHP 71
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ ++ MI +V+ + A+ F ++ G P++ L +G + +G IH
Sbjct: 72 SLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIH 131
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
A+V + G+E D + +++DMYA+ G +E VF+ MP RD ++ +ISG +
Sbjct: 132 AFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFE 191
Query: 304 SAIELFMRMQLEG-VVPNES 322
A++++ RMQ+E PNE+
Sbjct: 192 EAVDVYRRMQMESNEKPNEA 211
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 187/487 (38%), Positives = 272/487 (55%), Gaps = 36/487 (7%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVG-KIIGFCSASDIGDLSHGYRLFV-CLQYRTTFIWN 57
M+Q+ +IQ+ + S DP + K IG S+ G+L H +F L + F +N
Sbjct: 37 MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSH--GNLRHSVLIFNHFLSFPNIFAYN 94
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPN--NYTFSFILRACADTSCLFVGLICHAQVI 115
+++ F++ N + + L PN YTF+ +L+ACA + + G H V
Sbjct: 95 ALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVT 154
Query: 116 RLGWESYDFVLNGLLHLY--ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+ G ES FV N L+ LY CNC+ A+KLFD V RDV+SW +LI+GY SG + A
Sbjct: 155 KYGCESNLFVRNSLVDLYFKVGCNCI--AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAF 232
R +FD M EKN VSWS MI+GY + + + +A+E F MQ G PN +V L+ACA
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 272
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGALD G+WIH ++ RN IE+ + LG A+ DMYAKCGC+ A VF M RDV +++ +
Sbjct: 273 LGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSII 332
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYG 328
I GLA + + A F M +G+ PN+ M ++YG
Sbjct: 333 IMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYG 392
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I P ++HYGC+VDLL RAG L+ A+ ++ MP++P+ V GALL CR++ D + G+ V
Sbjct: 393 ITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVV 452
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
++E +H G V L+N+YAS + + R M DN+ K PGCS IE++ V EF
Sbjct: 453 WRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEF 512
Query: 449 VSGERTN 455
G+ ++
Sbjct: 513 FMGDSSH 519
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 185/505 (36%), Positives = 283/505 (56%), Gaps = 33/505 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K +K + + L G D + + K++ F + + G+ ++ +R+F + F++NTMI
Sbjct: 23 LKHLKHVHAALLRLGLDEDSYLLNKVLRF--SFNFGNTNYSHRIFHQTKEPNIFLFNTMI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G + ++ +Y M + P+++TF F+L+ACA +G+ H V++ G E
Sbjct: 81 HGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCE 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF--- 177
S FV L+ LY C +D A K+FD ++V +WT++I+GY G+ A MF
Sbjct: 141 SDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRA 200
Query: 178 ----DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
D M EK+ VSWS+MI GY L KEAL+ F M GFRP+ +VG L ACA L
Sbjct: 201 CSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARL 260
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
GAL+ G W +DRN + +LGTA+IDMYAKCG +++A VF M +D+ + + I
Sbjct: 261 GALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAI 320
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGI 329
SGLA +A LF +M+ G+ P+ SM ++ +
Sbjct: 321 SGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTL 380
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P ++HYGC+VDLLGRAG L+ A ++V+ MP+E + V GALL CR+H D L + ++
Sbjct: 381 TPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLK 440
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L+ + G +VLLSNIY+++ +W K+R M + ++KVPG S IEVDGVV EF+
Sbjct: 441 QLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFL 500
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKS 474
G+ ++ L E+I L + K LK+
Sbjct: 501 VGDTSHPLSEKIYAKLGELVKDLKA 525
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 169/468 (36%), Positives = 261/468 (55%), Gaps = 25/468 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G ++F +Q W +I + ++P KAF+++ + S P+++
Sbjct: 299 TQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVV 358
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+ AC L G I H V R S V N L+ +Y+ ++ A +F +
Sbjct: 359 GAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIK 418
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV SWTSL+NG+ K I AR++FD+MP +N+VSW+AMI GYVQ ++ LE F M+
Sbjct: 419 DVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMR 478
Query: 213 LCGFR-PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G P IV L+ CA +GA D G +H YV++ ++LD+ + A++DMYAK G +
Sbjct: 479 AEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGAL 538
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
A +F MP RDVF++T++ISGLA H + A+E F M G PNE
Sbjct: 539 VLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSAC 598
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
M + +GI+P +QHYGC+VDLLGRAG+L AK+++ MPI+PD+ +
Sbjct: 599 SHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVI 658
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
+LL+AC VHG++ L + + ++E D +GV++LL NIY S +W K R+ M D
Sbjct: 659 WRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRD 718
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
V+K PGCS +EV+GVV EF++ + + + ++ +L I + +K L
Sbjct: 719 RRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMKDL 766
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 129/254 (50%), Gaps = 13/254 (5%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
L+N Y + G A+++F+ + + VSW+ +I+ Y+ +A F+++ G RP+
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
+VGA++AC L GR +H V R + D I+G A+IDMY++ G IE ACSVF
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339
+M +DV ++TSL++G + +A +F M + V +M I G G
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAM--ITGYVQGE------ 465
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
V + G LE +++ E P + A+L+ C G DLG + + +LD +
Sbjct: 466 VPIPG----LELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLD 521
Query: 400 -GVHVLLSNIYAST 412
V+ L ++YA +
Sbjct: 522 VTVNNALMDMYAKS 535
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 180/500 (36%), Positives = 277/500 (55%), Gaps = 28/500 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QIKQ+ +H+ +G + + K+I + D+ S+ +F + Y F+W MIRG
Sbjct: 57 QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+A + ++ Y +M R P ++TFS + +AC + +G HAQ I +G +
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176
Query: 123 D-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
D +V N ++ LY C + ARK+FD RDV+SWT LI YAK G + A +FD +P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
K+ V+W+AM+ GY Q KEALE+F MQ G + + G ++ACA LGA+ W
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296
Query: 242 IHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
I +R+G ++++G+A+IDMY+KCG + A VF+ M R+VF+Y+S+I G A H
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
++ SA++LF M + PN+ M + +G+ P H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y C+VDLLGRAG LE A +V+ MP+EP+ V GALL ACR+HG+ D+ + L +
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE-VDGVVCEFVSGERT 454
+ G ++LLSNIYAS +W V K+R+ + + +K PGCS E +G + +F +G+ T
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536
Query: 455 NVLMEEIVLLLFGIDKHLKS 474
+ EI L + + L+S
Sbjct: 537 HPRSSEIRQALKQLIERLRS 556
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/569 (32%), Positives = 295/569 (51%), Gaps = 87/569 (15%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
++++Q+ + + PF +++ S I DL + +F +Q R+ WNT+I+
Sbjct: 27 QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ E L+ +++ ++LP+N+T +++ CA + G H +++G+ S
Sbjct: 87 CYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 145
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV L+++Y+ C +D ARK+FD +++DV+ W SLI+GYA+ G+I IA Q+F++MP
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205
Query: 182 EKNA-------------------------------VSWSAMINGYVQVDLFKEALEHFNY 210
E++A VSW+AMINGY++ F ALE F
Sbjct: 206 ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQ 265
Query: 211 MQL-------------------------------CGFRPNHAGIVGALTACAFLGALDQG 239
M + G RP+HA +V L+A + L L +G
Sbjct: 266 MPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 325
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIH+Y+++NG ELD ILGT++I+MYAKCGCIE+A +VF ++ + V +T++I GL H
Sbjct: 326 RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIH 385
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
+ A+ LF+ M G+ PN + M Y IEP ++H
Sbjct: 386 GMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEH 445
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCLVD+L RAG LE AK + MPI P+ + +LL R HG +D+G+ + ++E +
Sbjct: 446 YGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVA 505
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G ++LLSN+YA++ W V VR M RK PGCS +E G + EF+ G+ ++
Sbjct: 506 PETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISH 565
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EI + + + LK + D +V
Sbjct: 566 PQTKEIYAKMSEMKEKLKCVGHVPDTTQV 594
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 186/520 (35%), Positives = 281/520 (54%), Gaps = 45/520 (8%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++ + +HL VSG L P + + ++S+ LS+ RL + + T N IR
Sbjct: 21 HLRALHAHLVVSGRLASPSHLAAFLASLASSN--HLSYA-RLVLPQRPATLLAHNAFIRA 77
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA--------------CADTSCLFVGL 108
A P AFA ++ + P++Y+ +F++RA A+ + +
Sbjct: 78 LARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQAV 134
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +R G + V +G+L +YA + +R F DV+ T+++ A G
Sbjct: 135 SAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGG 194
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ AR +FD MP+++ V+WSAMI GY+ V +EAL F+ M G A +V LT
Sbjct: 195 DVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLT 254
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA +G LD+G+W+H YV G+++ I LGTA++DMY+KCG + TA VF+SM R+V+
Sbjct: 255 ACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYT 314
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+TS +SGLA + ++LF RM+ G+ PN +SM
Sbjct: 315 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD 374
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ YG++P +HYGC+VDL GRAG L+ A + +MP+EP V GALLNA R+H VDLG
Sbjct: 375 K-YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 433
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
K ++ L+ +++ HV LSNIYA ++ W GV +VR M+ V+KVPG S IEVDG
Sbjct: 434 KYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGK 493
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V EF G R + EI L+L +D+ L+ + + EV
Sbjct: 494 VHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREV 533
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 285/518 (55%), Gaps = 36/518 (6%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
++++Q+ + + PF +++ S I DL + +F +Q R+ WNT+I+
Sbjct: 30 QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 89
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ E L+ +++ ++LP+N+T +++ CA + G H +++G+ S
Sbjct: 90 CYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 148
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI-----------SWTSLINGYAKSGQI 170
FV L+++Y+ C +D ARK+FD +++DV+ SW ++INGY KSG
Sbjct: 149 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDF 208
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A ++F +MP + V+W+ MI GY F +A++ F M G RP+HA +V L+A
Sbjct: 209 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 268
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
+ L L +GRWIH+Y+++NG ELD ILGT++I+MYAKCGCIE+A +VF ++ + V +T
Sbjct: 269 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 328
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
++I GL H + A+ LF+ M G+ PN + M
Sbjct: 329 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNE 388
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y IEP ++HYGCLVD+L RAG LE AK + MPI P+ + +LL R HG +D+G+
Sbjct: 389 YKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEY 448
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+ ++E + + G ++LLSN+YA++ W V VR M RK PGCS +E G +
Sbjct: 449 AAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLH 508
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EF+ G+ ++ +EI + + + LK + D +V
Sbjct: 509 EFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQV 546
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/450 (37%), Positives = 256/450 (56%), Gaps = 24/450 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+L +LF R WN++I G+ +AF LY +M + +P+ T ++
Sbjct: 204 GELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A L +G H + +G + N L+ +Y C ++ A+ LF+ + V+
Sbjct: 264 SASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVV 323
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT+++ GYAK G + A ++F++MPEK+ V W+A+I G+VQ KEAL F+ MQ
Sbjct: 324 SWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS 383
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ +V L+AC+ LGALD G W+H YVD++ + +++ LGTA++DMYAKCG I+ A
Sbjct: 384 VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAI 443
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF+ MP R+ +T++I GLA H Q +AI F M G+VP+E
Sbjct: 444 QVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGG 503
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M+ YGI P ++HY CLVDLLGRAG LE A++++R MP EPD V GAL
Sbjct: 504 LVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGAL 563
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
R+HG+V +G+ L+E G++VLL+N+Y W KVR+ ME+ V
Sbjct: 564 FFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVE 623
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
K PGCS IE++G+V +F+ ++++ E+I
Sbjct: 624 KTPGCSSIEMNGLVYDFIIRDKSHPQSEKI 653
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 189/415 (45%), Gaps = 86/415 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++K+I + + +G + D FA+ +++ FC+ S+ +L + ++ F WN I
Sbjct: 67 MAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNXFSWNMAI 126
Query: 61 RGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG+ E PI A LY+ MLR +P+NYT+ + + CA S + VI+LG+
Sbjct: 127 RGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGF 186
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+S FV N ++H+ +C + ARKLFD S RD++SW S+INGY + G A ++ K
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M E N + P+ ++G ++A A L L G
Sbjct: 247 MGELNVM-------------------------------PDEVTMIGVVSASAQLENLALG 275
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKC------------------------------- 268
R +H ++ G+ L + L A++DMY KC
Sbjct: 276 RKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G +E+A +F+ MP +DV + +LI G +S A+ LF MQ V P++
Sbjct: 336 GLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCL 395
Query: 322 -SMSEIYGIEPGV--QHY-------------GCLVDLLGRAGMLEAAKKVVREMP 360
+ S++ ++ G+ HY LVD+ + G ++ A +V EMP
Sbjct: 396 SACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP 450
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/491 (35%), Positives = 282/491 (57%), Gaps = 31/491 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+ ++++ +T +G +D + +I + + D+ LF + R WN MI G
Sbjct: 155 KAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMK--MLFDEMPDRDVISWNVMISG 212
Query: 63 FAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ + A ++ +M S +P+ T L AC L +G H +R +
Sbjct: 213 YVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKF 271
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N LL +Y C C+ AR +F+ +++VI WT++++GYA G++ AR++F+ P
Sbjct: 272 TPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSP 331
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
++ V W+AMINGYVQ + F EA+ F MQ+ +P+ +V LT CA GA++QG+W
Sbjct: 332 IRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKW 391
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IH ++D N I +D ++GTA+I+MYAKCG IE A +F + +D ++TS+I GLA + +
Sbjct: 392 IHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGK 451
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
++ A+ELF +M+ GV P++ SM Y I+P V+HYG
Sbjct: 452 TSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYG 511
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVL---GALLNACRVHGDVDLGKETVESLVER 394
CLVDLLGRAG+L A+++++++P E + G+LL+ACR++G+V++G+ + LV+
Sbjct: 512 CLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKF 571
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
VH LL+NIYA ++W V KVRR M+D V+K PGCS IEVD ++ EF SG +
Sbjct: 572 ESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPS 631
Query: 455 NVLMEEIVLLL 465
+ M EI +L
Sbjct: 632 HPEMREIYYML 642
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 196/409 (47%), Gaps = 60/409 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M +KQI + + G D ++ K++ FC+ G+L++ ++F ++Y I+N +I
Sbjct: 50 MTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLII 109
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQ-----VI 115
+ FA+K + L+ ++ P+N+T+ F+ +A ++G + A+ V
Sbjct: 110 KAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIG-----YLGEVSKAEKLRGLVT 164
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G E +V N L+ +YA D + LFD +RDVISW +I+GY K + A
Sbjct: 165 KTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAIN 224
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F +M E++ G P+ A +V L+AC L
Sbjct: 225 VFCRMQEES------------------------------GLMPDEATVVSTLSACTALKR 254
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ G+ IH YV R+ ++ I+G A++DMY KCGC+ A +VF+ MP+++V +T+++SG
Sbjct: 255 LELGKKIHHYV-RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSG 313
Query: 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
AN + A ELF + VV +M Y VQ + A +
Sbjct: 314 YANCGELEEARELFEGSPIRDVVIWTAMINGY-----VQF-----------NRFDEAVAL 357
Query: 356 VREMPI---EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
REM I +PD +++ +LL C G ++ GK E + E + + V
Sbjct: 358 FREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAV 406
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/450 (37%), Positives = 256/450 (56%), Gaps = 24/450 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+L +LF R WN++I G+ +AF LY +M + +P+ T ++
Sbjct: 204 GELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A L +G H + +G + N L+ +Y C ++ A+ LF+ + V+
Sbjct: 264 SASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVV 323
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT+++ GYAK G + A ++F++MPEK+ V W+A+I G+VQ KEAL F+ MQ
Sbjct: 324 SWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASS 383
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ +V L+AC+ LGALD G W+H YVD++ + +++ LGTA++DMYAKCG I+ A
Sbjct: 384 VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAI 443
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF+ MP R+ +T++I GLA H Q +AI F M G+VP+E
Sbjct: 444 QVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGG 503
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M+ YGI P ++HY CLVDLLGRAG LE A++++R MP EPD V GAL
Sbjct: 504 LVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGAL 563
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
R+HG+V +G+ L+E G++VLL+N+Y W KVR+ ME+ V
Sbjct: 564 FFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVE 623
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
K PGCS IE++G+V +F+ ++++ E+I
Sbjct: 624 KTPGCSSIEMNGLVYDFIIRDKSHPQSEKI 653
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 189/415 (45%), Gaps = 86/415 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++K+I + + +G + D FA+ +++ FC+ S+ +L + ++ F WN I
Sbjct: 67 MAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNVFSWNMAI 126
Query: 61 RGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG+ E PI A LY+ MLR +P+NYT+ + + CA S + VI+LG+
Sbjct: 127 RGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGF 186
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+S FV N ++H+ +C + ARKLFD S RD++SW S+INGY + G A ++ K
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M E N + P+ ++G ++A A L L G
Sbjct: 247 MGELNVM-------------------------------PDEVTMIGVVSASAQLENLALG 275
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKC------------------------------- 268
R +H ++ G+ L + L A++DMY KC
Sbjct: 276 RKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKF 335
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G +E+A +F+ MP +DV + +LI G +S A+ LF MQ V P++
Sbjct: 336 GLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCL 395
Query: 322 -SMSEIYGIEPGV--QHY-------------GCLVDLLGRAGMLEAAKKVVREMP 360
+ S++ ++ G+ HY LVD+ + G ++ A +V EMP
Sbjct: 396 SACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP 450
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 280/481 (58%), Gaps = 25/481 (5%)
Query: 25 KIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84
KI+ F + S+ GD+ + YR+F + T F WN +IRG++ PI + +++ +MLR
Sbjct: 51 KILSFSALSNSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGV 110
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
P+ T+ F+++A A S G+ HAQ+I+ G ES F+ N L+H+YA+C + A K
Sbjct: 111 APDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHK 170
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+F+ ++++SW S+++GYAK G++++A+++F+ M E++ SWS+ I+GYV+ ++EA
Sbjct: 171 VFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREA 230
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
+ F M+ G + N +V L+ACA LGAL +GR +H Y+ N + + ++L T+++DM
Sbjct: 231 MAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDM 290
Query: 265 YAKCGCIETACSVFD--SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
YAKCG IE A VF S DVF + ++I GLA H +++LF MQ+ G+ +E
Sbjct: 291 YAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEI 350
Query: 323 --------------MSEIY---------GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ E + G+ P +HY C+VD+L RAG L A + + ++
Sbjct: 351 TYLCLLAACAHGGLVKEAWNFFESLVKRGMTPTSEHYACMVDVLARAGQLTTAYQFICQI 410
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
PIEP +LGA+ + C H + DL + L+E +++G ++ LSN+YA ++W+ +
Sbjct: 411 PIEPTASMLGAIFSGCINHRNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSK 470
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
+R ME V+K PG S +E+ + F++ ++T+ +E +L + +K C D
Sbjct: 471 SMREAMERRGVKKSPGFSFVEISEIHHRFIAHDKTHPDSDETYSMLHFVVCQMKHGCPQD 530
Query: 480 D 480
+
Sbjct: 531 N 531
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 185/520 (35%), Positives = 280/520 (53%), Gaps = 45/520 (8%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++ + +HL VSG L P + + ++S+ LS+ RL + + T N IR
Sbjct: 1226 HLRALHAHLVVSGRLASPSHLAAFLASLASSN--HLSYA-RLVLPQRPATLLAHNAFIRA 1282
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR--------------ACADTSCLFVGL 108
A P AFA ++ + P++Y+ +F++R A+ + +
Sbjct: 1283 LARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQAV 1339
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +R G + V +G+L +YA + +R F DV+ T+++ A G
Sbjct: 1340 SAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGG 1399
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ AR +FD MP+++ V+WSAMI GY+ V +EAL F+ M G A +V LT
Sbjct: 1400 DVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLT 1459
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA +G LD+G+W+H YV G+++ I LGTA++DMY+KCG + TA VF+SM R+V+
Sbjct: 1460 ACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYT 1519
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+TS +SGLA + ++LF RM+ G+ PN +SM
Sbjct: 1520 WTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD 1579
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ YG++P +HYGC+VDL GRAG L+ A + +MP+EP V GALLNA R+H VDLG
Sbjct: 1580 K-YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLG 1638
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
K ++ L+ +++ HV LSNIYA ++ W GV +VR M+ V+KVPG S IEVDG
Sbjct: 1639 KYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGK 1698
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V EF G R + EI L+L +D+ L+ + + EV
Sbjct: 1699 VHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREV 1738
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 182/529 (34%), Positives = 283/529 (53%), Gaps = 90/529 (17%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
K+ QI + L VSG L P A G+ + CS D + H LF L+ FI NT++
Sbjct: 73 KEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPD--SVQHAVSLFEGLEEPDAFICNTIM 130
Query: 61 RGFAEKNEPIKAFALY-KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R + N+P A Y +QM+R PN+YTF +++ C + + G HA++++ G+
Sbjct: 131 RTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGF 190
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E FV N L+H+Y+ C + AR +F++ D+++W S+I+GY K+G+I AR++F++
Sbjct: 191 ELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEE 250
Query: 180 MPEKN-------------------------------AVSWSAMINGYVQVDLFKEALEHF 208
MPE++ VSW+ MI+GY QV + A E F
Sbjct: 251 MPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELF 310
Query: 209 NYM-----------------------------QLCG-FRPNHAGIVGALTACAFLGALDQ 238
N+M ++ G PN A +V LTACA LG LD+
Sbjct: 311 NWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDR 370
Query: 239 GRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WIH+Y+ N IE D++L TA++ MYAKCG ++ A VFD M NR V ++ S+I G
Sbjct: 371 GKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYG 430
Query: 298 NHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGV 333
H Q+ A+E+F+ M+ G +PN++ M Y IEP V
Sbjct: 431 MHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKV 490
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLLGRAG+++ ++++R+MP+E + GALL+ACR H + +L + + L+E
Sbjct: 491 EHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIE 550
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
G ++LLSNIYA+ +W+ VE VR+ M++ + K G S + ++
Sbjct: 551 LEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIE 599
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/461 (37%), Positives = 261/461 (56%), Gaps = 24/461 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+LS Y +F + R WN+MI G ++ I+A +YK+M PN T ++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+C+ L +G H + G E + N L+ +Y C + AR LFD + ++
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV 326
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT+++ GYA+ G + +AR++ K+PEK+ V W+A+I+G VQ KEAL F+ MQ+
Sbjct: 327 SWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRT 386
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ +V L+AC+ LGALD G WIH Y++R+ + +D+ LGTA++DMYAKCG I A
Sbjct: 387 IEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARAL 446
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF+ +P R+ +T++I GLA H + A+ F +M G+VP+E
Sbjct: 447 QVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG 506
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
MS + + P ++HY C+VDLLGRAG LE A+++V+ MP+ D VLGAL
Sbjct: 507 LVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGAL 566
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
ACRV+G+V +G+ T L+E G +VLL+++Y+ + W R+ M D V
Sbjct: 567 FFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVE 626
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
K PGCSL+E++G+V EFV + ++ E I L + K L
Sbjct: 627 KTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQL 667
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 190/385 (49%), Gaps = 49/385 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+KQIQ+ + +G + + FA +++ FC+ S+ +L + R+ ++ F WN IRG
Sbjct: 72 QLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRG 131
Query: 63 FAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACAD--TSCLFVGLICHAQVIRLGW 119
+ E + F LYK+ML L P+N+T+ +L+ C +SCL +G++ H V++ G+
Sbjct: 132 YVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGH--VLKFGF 189
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E FV N + + +C + A +F+ S RD+++W S+I G K G
Sbjct: 190 ECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRG----------- 238
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
L EA++ + M+ RPN ++G +++C+ + L+ G
Sbjct: 239 --------------------LAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLG 278
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ H Y+ +G+E I L A++DMY KCG + TA +FD+M + + ++T+++ G A
Sbjct: 279 KEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARF 338
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
A E+ ++ + VVP ++ GC+ G+ + + +R
Sbjct: 339 GFLDVAREILYKIPEKSVVPWNAIIS-----------GCVQAKQGKEALALFHEMQIRT- 386
Query: 360 PIEPDNYVLGALLNACRVHGDVDLG 384
IEPD + L+AC G +D+G
Sbjct: 387 -IEPDKVTMVNCLSACSQLGALDVG 410
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/493 (37%), Positives = 278/493 (56%), Gaps = 30/493 (6%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI + L G +P K+ S + +G L +F F ++ +I +
Sbjct: 65 QIHASLLRRGLYHNPILNFKLQR--SYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQ 122
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+AF Y QML PN +TFS +L++C+ S G + H Q I+LG S +V
Sbjct: 123 SRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLES----GKVLHCQAIKLGLGSDLYV 178
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
GL+ +YA + AR+LFD R ++S T+++ Y+K G++ AR +F+ M E++
Sbjct: 179 RTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDV 238
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V W+ MI GY Q + E+L+ F M + PN ++ L+AC LGAL+ GRWIH+Y
Sbjct: 239 VCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSY 298
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
++ GI++++ +GTA+IDMY+KCG +E A VFD + ++DV A+ S+I G A H S A
Sbjct: 299 IENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHA 358
Query: 306 IELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCLVD 341
++LF M G P + M + YGIEP ++HYGC+V+
Sbjct: 359 LQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVN 418
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG LE A +V+ M I D + G LL CR+H ++ LG+E + LV++ L + G
Sbjct: 419 LLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGT 478
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VLLSN+YA+T W GV K+R M+++ + K GCS IEVD V EFV+GER + +EI
Sbjct: 479 YVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEI 538
Query: 462 VLLLFGIDKHLKS 474
++L I+ LK+
Sbjct: 539 YVMLNEINSWLKA 551
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 173/466 (37%), Positives = 271/466 (58%), Gaps = 29/466 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL ++F ++ + WN+MI GF +K P KA L+K+M D ++ T +L
Sbjct: 182 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241
Query: 96 RACADTSCLFVGL-ICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRD 153
ACA L G +C I + + L N +L +Y C ++ A++LFD +D
Sbjct: 242 SACAKIRDLEFGRRVC--SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 299
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
++WT++++GYA S AR++ + MP+K+ V+W+A+I+ Y Q EAL F+ +QL
Sbjct: 300 NVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQL 359
Query: 214 -CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+ N +V L+ACA +GAL+ GRWIH+Y+ +NGI+++ + +A+I MY+KCG +E
Sbjct: 360 QKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLE 419
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
A VF+S+ RDVF ++++I GLA H + A+++F +MQ V PN
Sbjct: 420 KAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACS 479
Query: 321 --------ES----MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
ES M YGI P +HY C+VD+LGR+G LE A K + MPI P V
Sbjct: 480 HTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 539
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
GALL AC++H ++ L + L+E ++G HVLLSNIYA + +W+ V ++R+ M
Sbjct: 540 GALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVT 599
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
++K PGCS IE+DG++ EF+SG+ + + E++ L + + LKS
Sbjct: 600 GLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKS 645
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 205/421 (48%), Gaps = 56/421 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q+KQ +H+ +G DP++ K+ + S L + ++F + +F WNT+I
Sbjct: 44 LRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLI 103
Query: 61 RGFAEKNEPIKAFALYKQMLRSDF--LPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
R +A +P+ + + M+ S+ PN YTF F+++A A+ S L +G H I+
Sbjct: 104 RAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSA 163
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
S FV N L+H Y +C +D A K+F +DV+SW S+ING+ + G
Sbjct: 164 VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS--------- 214
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
P+K ALE F M+ + +H +VG L+ACA + L+
Sbjct: 215 --PDK--------------------ALELFKKMESEDVKASHVTMVGVLSACAKIRDLEF 252
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GR + +Y++ N + +++ L A++DMY KCG IE A +FD+M +D +T+++ G A
Sbjct: 253 GRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 312
Query: 299 HDQSASAIELFMRMQLEGVV--------------PNESMSEIYGIEPGVQ---HYGCLVD 341
+ +A E+ M + +V PNE++ + ++ + LV
Sbjct: 313 SEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVS 372
Query: 342 LL---GRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
L + G LE + + +++ I+ + YV AL++ GD++ +E S+ +R
Sbjct: 373 TLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRD 432
Query: 396 L 396
+
Sbjct: 433 V 433
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
I S++ +G + + +I S GDL +F ++ R F+W+ MI G A
Sbjct: 389 IHSYIKKNGIKMNFYVTSALIHM--YSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMH 446
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+A ++ +M ++ PN TF+ + AC+ T GL+ A+ + ES
Sbjct: 447 GCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHT-----GLVDEAESLFYKMES 496
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 185/502 (36%), Positives = 276/502 (54%), Gaps = 62/502 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLS------HGYRLFVCLQYRTTF 54
+K +KQI + + ++G + +G ++ S S +G + + ++LF + TF
Sbjct: 15 LKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTF 74
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
++N MIRG ++ P++A +LY +M R ++YTF F+L+AC + G H V
Sbjct: 75 MYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMV 134
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+RLG+ S V N LL +A C ++ A LFD S DV++W+SLI GYA+ G + +AR
Sbjct: 135 LRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVAR 194
Query: 175 QMFDKMPE-------------------------------KNAVSWSAMINGYVQVDLFKE 203
++F++MPE K+ VSW+AMI GYV L K+
Sbjct: 195 KLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQ 254
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI-ELDIILGTAII 262
ALE FN M G P+ ++ L+ACA LG L+ G+ +HA V + +L +LG A+I
Sbjct: 255 ALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALI 314
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
DMYAKCG I+ + VF S+ ++DV ++ S+I G+A H ++ LF MQ + PNE
Sbjct: 315 DMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEI 374
Query: 323 ------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
MS Y IEP ++H GC+VD+LGRAG+L+ A K +
Sbjct: 375 TFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDS 434
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
M IEP+ + LL AC+VHGDV+L K E L DH G +VL+SN+YAS +W+G
Sbjct: 435 MKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGA 494
Query: 419 EKVRRGMEDNEVRKVPGCSLIE 440
EKVR+ M+D+ V K+ G S +E
Sbjct: 495 EKVRKLMDDSGVTKIRGSSFVE 516
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 172/485 (35%), Positives = 276/485 (56%), Gaps = 27/485 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+ I + L +G DPF V +++ CS D + R+F +++ +I
Sbjct: 62 INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAID--YASRIFQYTHNPNVYLYTALI 119
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GF ++A LY +ML LP+NY + IL+AC L G H++ ++LG+
Sbjct: 120 DGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFS 179
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S V ++ LY C + AR++F+ + DV++ T +I+ Y+ G + A +F ++
Sbjct: 180 SNRLVRLRIMELYGKCGELGDARRVFE-EMPEDVVASTVMISSYSDQGLVEEAGAVFSRV 238
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ V W+AMI+G+V+ + ALE F MQ RPN IV L+AC+ LGAL+ GR
Sbjct: 239 RRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 298
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H+Y+ + IEL++ +G A+I+MY++CG I+ A +VFD M +RDV Y ++ISGL+ +
Sbjct: 299 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 358
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+S AIELF M + P SM+ Y +EP ++HY
Sbjct: 359 KSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHY 418
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGR G LE A ++R M + PD+ +LG LL+AC++H +++LG++ + L +R
Sbjct: 419 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQ 478
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
G +VLLS++YAS+ +W +VR M++ ++K PGCS IEV+ + EF+ G+ +
Sbjct: 479 ADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHP 538
Query: 457 LMEEI 461
E I
Sbjct: 539 QKERI 543
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 183/496 (36%), Positives = 273/496 (55%), Gaps = 57/496 (11%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+KQI + L + G + A+ ++I + + G +++ +++F + F+WNTM+RG
Sbjct: 29 LKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGS 88
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
++ P K LY QM P+ +TFSF+L+ C G H +V++ G+E
Sbjct: 89 SQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNS 148
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV N L++ ++ C + AR +F R V+SW++L GYA+ G++ +ARQ+FD+MP K
Sbjct: 149 FVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVK 208
Query: 184 NAVSWSAMINGYVQ-------VDLF------------------------KEALEHFNYMQ 212
+ VSW+ MI GYV+ LF ++ALE F M+
Sbjct: 209 DLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMR 268
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCI 271
G P+ ++ L+ACA LG L GR +H + + +L ++LG A++DMYAKCG I
Sbjct: 269 NVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSI 328
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ-LEGVVPNES-------- 322
E A VF M +DV + S+I GLA H + +I+LF MQ L+ + PNE
Sbjct: 329 EIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVA 388
Query: 323 ----------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
M E Y IEP + H+GC+VDLLGRAG+L A +++ +M IEP+
Sbjct: 389 CSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAI 448
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ LL ACRVHG+V+LG+ E L++ D G +VLLSNIYAS +W+G E+VR+ M+
Sbjct: 449 IWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLMD 508
Query: 427 DNEVRKVPGCSLIEVD 442
D VRK G SLIE D
Sbjct: 509 DGGVRKEAGRSLIEAD 524
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 252/438 (57%), Gaps = 24/438 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+LS Y +F + R WN+MI G ++ I+A +YK+M PN T ++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+C+ L +G H + G E + N L+ +Y C + AR LFD + ++
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV 326
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT+++ GYA+ G + +AR++ K+PEK+ V W+A+I+G VQ KEAL F+ MQ+
Sbjct: 327 SWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRT 386
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ +V L+AC+ LGALD G WIH Y++R+ + +D+ LGTA++DMYAKCG I A
Sbjct: 387 IEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARAL 446
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF+ +P R+ +T++I GLA H + A+ F +M G+VP+E
Sbjct: 447 QVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG 506
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
MS + + P ++HY C+VDLLGRAG LE A+++V+ MP+ D VLGAL
Sbjct: 507 LVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGAL 566
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
ACRV+G+V +G+ T L+E G +VLL+++Y+ + W R+ M D V
Sbjct: 567 FFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVE 626
Query: 432 KVPGCSLIEVDGVVCEFV 449
K PGCSL+E++G+V EFV
Sbjct: 627 KTPGCSLVEINGIVHEFV 644
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 190/385 (49%), Gaps = 49/385 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+KQIQ+ + +G + + FA +++ FC+ S+ +L + R+ ++ F WN IRG
Sbjct: 72 QLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRG 131
Query: 63 FAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACAD--TSCLFVGLICHAQVIRLGW 119
+ E + F LYK+ML L P+N+T+ +L+ C +SCL +G++ H V++ G+
Sbjct: 132 YVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGH--VLKFGF 189
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E FV N + + +C + A +F+ S RD+++W S+I G K G
Sbjct: 190 ECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRG----------- 238
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
L EA++ + M+ RPN ++G +++C+ + L+ G
Sbjct: 239 --------------------LAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLG 278
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ H Y+ +G+E I L A++DMY KCG + TA +FD+M + + ++T+++ G A
Sbjct: 279 KEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARF 338
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
A E+ ++ + VVP ++ GC+ G+ + + +R
Sbjct: 339 GFLDVAREILYKIPEKSVVPWNAIIS-----------GCVQAKQGKEALALFHEMQIRT- 386
Query: 360 PIEPDNYVLGALLNACRVHGDVDLG 384
IEPD + L+AC G +D+G
Sbjct: 387 -IEPDKVTMVNCLSACSQLGALDVG 410
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 174/508 (34%), Positives = 289/508 (56%), Gaps = 40/508 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MKQ KQI +H + + +I+ F + S GD + LF + F +N++I
Sbjct: 1 MKQTKQIHAHAITNNLTRFSYISSRILAFFALSPRGDFRYAETLFTHIPNPNIFDYNSII 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV----IR 116
+ ++ K F ++ +ML ++ PN++TF+ +++AC S L QV ++
Sbjct: 61 TSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSL-------EQVFTLSMK 113
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG S + ++ +++ ++ + + AR++FD NR+V+ WTSL++GY G ++ AR +
Sbjct: 114 LGNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDV 173
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL----CG-FRPNHAGIVGALTACA 231
FDKMP +N S+SAM++GYV+ F E ++ F ++ C + N A +V L AC
Sbjct: 174 FDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACT 233
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
+GA ++G+WIH+YV+ NG+E D+ LGTA+ID Y KCG ++ A VF+ MP +DV +++
Sbjct: 234 MVGAFEEGKWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATWSA 293
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIY 327
+I GLA + + A+ELF +M+ G PNE MSE Y
Sbjct: 294 MILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIMSEKY 353
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
I P ++HYGC+VD+L R+G ++ A + M IEPD + G+LLN C +HG +LG++
Sbjct: 354 NITPSIEHYGCVVDVLARSGQVKKALTFINSMHIEPDGAIWGSLLNGCLMHGHYELGQKV 413
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ L+E H G +VLL+N+YA+ +W GV +VR+ M+D V V G S IE+D + +
Sbjct: 414 GKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVMIVSGWSFIEIDQTIHK 473
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSL 475
F + ++ + EI +L + K ++ +
Sbjct: 474 FFADDKCCLYSREIYDVLSHLGKKVEDI 501
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 178/517 (34%), Positives = 275/517 (53%), Gaps = 57/517 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K +KQ+ +++ +G DP GK++ + S L + RLF+ F+ NT+I
Sbjct: 18 LKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG AE + P + + +M R P ++++F+F+L+A A L G+ H Q I G
Sbjct: 78 RGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGL 137
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLF---------------------------DMSVNR 152
+++ FV L+ +Y+ C + A+K+F DM NR
Sbjct: 138 DTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNR 197
Query: 153 ----DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++ SW ++ GY K+G++ +AR++F +MP K+ VSWS MI G+ F EA F
Sbjct: 198 MPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFF 257
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
+Q G RPN + GAL+ACA GA++ G+ +H +++++G + + A++D Y+KC
Sbjct: 258 RELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKC 317
Query: 269 GCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
G + A VF+ MP R + ++TS+I+GLA H AI+LF M+ G+ P+
Sbjct: 318 GNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISI 377
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
M +IY IEP ++HYGC+VDL GRAG L+ A + + MP+ P
Sbjct: 378 LYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLP 437
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
+ LL AC +HG+V L + E L E ++ G HVLLSNIYA +W V VRR
Sbjct: 438 TAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRR 497
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
M D + K PG S+IEVD ++ FV+GE N + EE
Sbjct: 498 SMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEE 534
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 187/558 (33%), Positives = 289/558 (51%), Gaps = 94/558 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-TFIWNTM 59
++ +KQI +HL SG L D F + K+ F IG + + + T +NT+
Sbjct: 18 IRSLKQIHAHLIASGLLHDEFVLSKVSEF-FGKHIGFVDYAFDFLNQTDLHVGTLPYNTL 76
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I +A P AF +Y +++ + F+P+ YTF +L+AC + G H +++G+
Sbjct: 77 IAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGF 136
Query: 120 ESYDFVLNGLLHL-------------------------------YATCNCMDPARKLF-D 147
+V N LLH Y D A LF
Sbjct: 137 LCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLK 196
Query: 148 MSVNRDVISWTSLINGYAKSGQISI----------------------------------- 172
M V +V ++ S++ + G +S+
Sbjct: 197 MDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCE 256
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR++FD++P+++ VSW+++I+G VQ K++LE F MQ+ G P+ + L+ACA
Sbjct: 257 ARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACAS 316
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGALD GRW+ Y++R GIE DI +GTA++DMYAKCGCIE A +F+ +PNR++F + +L
Sbjct: 317 LGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNAL 376
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE-------------------------SMSEIY 327
+ GLA H A++ F M G+ PNE +S+ +
Sbjct: 377 LGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPF 436
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
P ++HYGC++DLL RAG+L+ A K +R MP+ PD + GALL+AC+ +G+V+L +E
Sbjct: 437 NFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEI 496
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ L+E GV+VLLSNIYA+ E+W+ V +VRR M+D +RK PG S+IEVDG E
Sbjct: 497 LSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHE 556
Query: 448 FVSGERTNVLMEEIVLLL 465
F+ G+ + E+I +LL
Sbjct: 557 FLVGDTNHSRNEDIHILL 574
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 264/473 (55%), Gaps = 24/473 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ ++F + ++NT++ + + +ML+ P+ T +
Sbjct: 280 GDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTI 339
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L VG HA V+R G E +D + N ++ +Y C + A K+F+ N+ V+
Sbjct: 340 AACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVV 399
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W SLI G + G + +A ++FD+M E++ VSW+ MI VQV +F+EA+E F MQ G
Sbjct: 400 TWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQG 459
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ +VG +AC +LGALD +W+ Y+++N I +D+ LGTA++DM+++CG +A
Sbjct: 460 IPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAM 519
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF M RDV A+T+ I +A + AIELF M + V P++
Sbjct: 520 HVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGG 579
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM + +GI P + HYGC+VDLLGRAG+LE A +++ MPIEP++ V G+L
Sbjct: 580 SVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSL 639
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR H +V+L E L + + + G+HVLLSNIYAS +W V +VR M++ V+
Sbjct: 640 LAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQ 699
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
KVPG S IEV G++ EF SG+ ++ I L+L I+ L + D V
Sbjct: 700 KVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNV 752
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 175/368 (47%), Gaps = 55/368 (14%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
+ F++N +IRG+A +A LY QML +P+ YTF F+L AC+ L G+ H
Sbjct: 94 SLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVH 153
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
V+++G E FV N L+H YA+ G++
Sbjct: 154 GAVLKMGLEGDIFVSNSLIHF-------------------------------YAECGKVD 182
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+ R++FD M E+N VSW+++INGY DL KEA+ F M G PN +V ++ACA
Sbjct: 183 LGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
L L+ G+ + +Y+ G+EL I+ A++DMY KCG I A +FD N+++ Y +
Sbjct: 243 KLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNT 302
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNE-------------------SMSEIYGIEPG 332
++S +H+ ++ + + M +G P++ S Y + G
Sbjct: 303 IMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNG 362
Query: 333 VQHY----GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
++ + ++D+ + G EAA KV MP +L+ GD++L
Sbjct: 363 LEGWDNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWRIF 421
Query: 389 ESLVERSL 396
+ ++ER L
Sbjct: 422 DEMLERDL 429
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 169/383 (44%), Gaps = 52/383 (13%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q+ + G D F +I F ++ G + G +LF + R W ++I G++
Sbjct: 151 QVHGAVLKMGLEGDIFVSNSLIHF--YAECGKVDLGRKLFDGMLERNVVSWTSLINGYSG 208
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
++ +A +L+ QM + PN T ++ ACA L +G + + LG E +
Sbjct: 209 RDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIM 268
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
+N L+ +Y C + AR++FD N++++ + ++++ Y S + D+M +K
Sbjct: 269 VNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQK-- 326
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
G RP+ ++ + ACA LG L G+ HAY
Sbjct: 327 -----------------------------GPRPDKVTMLSTIAACAQLGDLSVGKSSHAY 357
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V RNG+E + AIIDMY KCG E AC VF+ MPN+ V + SLI+GL A
Sbjct: 358 VLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELA 417
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IE 362
+F M +E + + ++ L + M E A ++ REM I
Sbjct: 418 WRIFDEM----------------LERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIP 461
Query: 363 PDNYVLGALLNACRVHGDVDLGK 385
D + + +AC G +DL K
Sbjct: 462 GDRVTMVGIASACGYLGALDLAK 484
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/520 (35%), Positives = 291/520 (55%), Gaps = 38/520 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K++KQI + + V+G F + K++ F S G+L + +++F ++ +T +WN MI
Sbjct: 31 IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITS--GNLLNAHKVFERIENPSTTVWNQMI 88
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG ++ P K LY +M+ ++ PN +T+SF++ CA + L G H +V+ G+
Sbjct: 89 RGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYC 148
Query: 121 SYDFVLNGLLHLYATCNCMD---PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
+ FV L++LYA D AR++FD V+R+++SW SL+ GY + G + AR++F
Sbjct: 149 TNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIF 208
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MPE+N VSW+ MI G Q+ K+AL F+ M+ G + + +V AL+ACA LG L
Sbjct: 209 DEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLK 268
Query: 238 QGRWIHAYVDRN----GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G WIH+Y+D L + L ++I MYA CG I+ A VF M R ++TS+I
Sbjct: 269 LGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMI 328
Query: 294 SGLANHDQSASAIELFMRMQLEGV---VPN------------------------ESMSEI 326
+G A + A+ +F MQ G P+ E M++
Sbjct: 329 TGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKK 388
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+GI P ++HYGC+VDLL RAG L+ A +++ MP++P++ V GALL CR+H + +L
Sbjct: 389 WGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASH 448
Query: 387 TVESL-VERSLDH-EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ L +E D G VLLSN+YA+ ++W V VR+ M + VRK G S ++++GV
Sbjct: 449 VAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGV 508
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V +FV+G+ T+ + +L I + K + D +EV
Sbjct: 509 VHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEV 548
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/467 (36%), Positives = 275/467 (58%), Gaps = 28/467 (5%)
Query: 31 SASDIGDLSHGYRLFVCLQYRTT-FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
S+S +G + Y LF L + F++NT+IR + +P + L+ ++ + P++Y
Sbjct: 52 SSSSLGFSLYAYSLFTSLTHPPNIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSY 111
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-- 147
+F F L+A S GL H+Q IR G S+ VL L+ +Y++ + D ARKLFD
Sbjct: 112 SFPFALKAVIRLSATKTGLQFHSQAIRFGLHSHLHVLVSLIRMYSSSHISD-ARKLFDGI 170
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
R+V W +++ YAK + A+ +FD MP++N +SW+A+I+GY ++ +A+
Sbjct: 171 PLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAI 230
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F MQL P+ ++ L+ACA LGAL+ G WI Y+D +G+ ++ L A+IDMYAK
Sbjct: 231 FRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAK 290
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------ 321
G I+ A +F+SM ++ + +T++I+GLA H A+E+F RM+ + V PNE
Sbjct: 291 SGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAV 350
Query: 322 ------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
+M Y I+P ++HYGC++DLLGRAG L+ A++++++MP EP
Sbjct: 351 LSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEP 410
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
+ + G+LL A HGD LG+ T++ L+E ++ G + LLSNIYAS +W VR+
Sbjct: 411 NAAIWGSLLAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSNIYASLGRWKASRIVRK 470
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDK 470
M D V+K+PG S IEV+ V EF++GE ++ +EI +++ I++
Sbjct: 471 MMRDRGVKKIPGGSFIEVNNRVNEFIAGETSHPQFDEIYEVIYKINE 517
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/520 (35%), Positives = 290/520 (55%), Gaps = 38/520 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K++KQI + + V+G F + K++ F S G+L + +++F ++ +T +WN MI
Sbjct: 47 IKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITS--GNLLNAHKVFERIENPSTTVWNQMI 104
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG ++ P K LY +M+ ++ PN +T+SF++ CA + L G H +V+ G+
Sbjct: 105 RGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYC 164
Query: 121 SYDFVLNGLLHLYATCNCMD---PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
+ FV L++LYA D AR++FD V+R+++SW SL+ GY + G + AR++F
Sbjct: 165 TNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIF 224
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MPE+N VSW+ MI G Q+ K+AL F+ M+ G + + +V AL+ACA LG L
Sbjct: 225 DEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLK 284
Query: 238 QGRWIHAYVDRN----GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G WIH+Y+D L + L ++I MYA CG I+ A VF M R ++TS+I
Sbjct: 285 LGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMI 344
Query: 294 SGLANHDQSASAIELFMRMQLEGV---VPN------------------------ESMSEI 326
+G A + A+ +F MQ G P+ E M++
Sbjct: 345 TGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKK 404
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+GI P ++HYGC+VDLL RAG L+ A ++ MP++P++ V GALL CR+H + +L
Sbjct: 405 WGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASH 464
Query: 387 TVESLV-ERSLDH-EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ LV E D G VLLSN+YA+ ++W V VR+ M + VRK G S ++++GV
Sbjct: 465 VAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGV 524
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V +FV+G+ T+ + +L I + K + D +EV
Sbjct: 525 VHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEV 564
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/556 (33%), Positives = 288/556 (51%), Gaps = 69/556 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG----FCSASDIGDLSHGYRLFV--CLQYRTTF 54
+ Q+KQ+ +T +G P + K++ S + + LF F
Sbjct: 38 LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALF 97
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+ N++IRG++ +A LY +ML PN+YTF F+L C + G+ H V
Sbjct: 98 MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYA--------- 165
+++G E F+ N L+H YA C MD K+F+ R+V+SWTSLI GYA
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217
Query: 166 --------------------KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
K G I A+++FD+ ++N V ++ +++ Y + L +EAL
Sbjct: 218 SLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREAL 277
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACA-----FLGALDQGRWIHAYVDRNGIELDIILGTA 260
+ M G RP+ ++ A++A A F G + G W+H Y+++NGI D+ L TA
Sbjct: 278 AILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTA 337
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++DM+A+CG ++A VF+ M RDV A+T+ I +A A LF +M ++GV P+
Sbjct: 338 LVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPD 397
Query: 321 E-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
S+ E +GI P ++HYGC+VDLLGRAG+L A +++
Sbjct: 398 VVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIK 457
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP+EP++ V G+LL ACRVH +V++ E + E + GVHVLLSNIYAS +W
Sbjct: 458 SMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTD 517
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
V +VR + + VRKVPG S ++V+GV+ EF SG+ ++ M I L+L ++ C
Sbjct: 518 VARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMN------CR 571
Query: 478 FDDGNEVATEGGSLLD 493
F D + LLD
Sbjct: 572 FSDAGHIPDLSNVLLD 587
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/454 (35%), Positives = 258/454 (56%), Gaps = 27/454 (5%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
+LF + R+ W TM+ G+ + ++ L++QM + +P+ +L AC
Sbjct: 323 QLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLE 382
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
+G HA ++ G F+ N LL LYA C +D A + F+ + SW S+++
Sbjct: 383 DFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLD 442
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
G+ +SG + AR F+K+PEK+ VSW+ M+N YV+ DLF E+ E F MQ +P+
Sbjct: 443 GFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTT 502
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
++ L++CA +GAL+ G W++ Y+++N I +D +LGTA+IDMY KCGC+E A +F +
Sbjct: 503 LISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQII 562
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
++VF +T++++ A Q+ AI+L++ M+ GV P+
Sbjct: 563 EKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYK 622
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
+ Y I P + HYGC+VDLLGR G LE K + MPIEPD + +L+ ACR H
Sbjct: 623 YFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSH 682
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
+V+L ++ + L+E + G HVLLSNIYA +W+ V KVR + + V K PG ++
Sbjct: 683 HNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTM 742
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
IE +GVV EFV+ +N++ +I+ +L I++ L
Sbjct: 743 IEQNGVVHEFVA---SNLVSADILCMLQDIERRL 773
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 179/354 (50%), Gaps = 15/354 (4%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G L +LF + +R WNTMI + K +A L+ +ML S LP+ T
Sbjct: 179 SKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMV 238
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM--SV 150
++ CA L +G H ++ +LN L+ +Y+ C MD A L
Sbjct: 239 SLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDES 298
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
DV+ WT+L++GY KS +I ARQ+FDKM E++ VSW+ M++GYVQ + E+LE F
Sbjct: 299 EVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQ 358
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M+ P+ +V L+AC L D GR +HA++ G+ +D LG A++D+YAKCG
Sbjct: 359 MRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGK 418
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
++ A F+ +P + ++ S++ G A + F ++ + +V +M Y
Sbjct: 419 LDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAY--- 475
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
V+H DL + E K ++ ++PD L +LL++C G ++ G
Sbjct: 476 --VKH-----DLFNES--FEIFCK-MQSSNVKPDKTTLISLLSSCAKVGALNHG 519
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 97/452 (21%), Positives = 187/452 (41%), Gaps = 90/452 (19%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ I +HL + + DP +++ F + + +L +++ + IWNT++
Sbjct: 48 IREFSPIHAHLITANLIHDPEITSQVLAFLLS--VNNLDCAHQILSYSHEPESIIWNTLL 105
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
++ P + Y M+ L + TF F++ AC + +G H ++++ G+
Sbjct: 106 ENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFG 165
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ N L+ LY+ C + +LF+ +RDVISW ++I+ Y G
Sbjct: 166 RNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKG------------ 213
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+++EAL+ F+ M + G P+ +V ++ CA L L+ G+
Sbjct: 214 -------------------MYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGK 254
Query: 241 WIHAYVDRNGI---------------------------------ELDIILGTAIIDMYAK 267
+H Y+ N + E+D++L T ++ Y K
Sbjct: 255 RLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVK 314
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-----S 322
I+ A +FD M R + ++T+++SG ++ELF +M+ E V+P+E
Sbjct: 315 SNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTV 374
Query: 323 MSEIYGIE---------PGVQHYGCLV---------DLLGRAGMLEAAKKVVREMPIEPD 364
+S +E + YG LV DL + G L+ A + ++P +
Sbjct: 375 LSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSA 434
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L CR G VD ++ + E+ +
Sbjct: 435 ASWNSMLDGFCR-SGGVDKARDFFNKIPEKDI 465
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 277/505 (54%), Gaps = 58/505 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQI H T G D +A ++ S+ G L ++F ++ +T W TMI A
Sbjct: 105 KQIHCHSTKLGFASDTYAQNTLMNM--YSNCGCLVSARKVFDKMEDKTVVSWATMIGVHA 162
Query: 65 EKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+ ++P +A L+ +M++S+ + PN T +L ACA + D
Sbjct: 163 QWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACA--------------------RARD 202
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ +H Y + + R V+ T L++ Y K G + +AR +FDK EK
Sbjct: 203 LAMVKRIHEY-----------IDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEK 251
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
N SW+ MING+V+ ++EAL F MQ G + + + L AC LGAL+ G+W+H
Sbjct: 252 NLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLH 311
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
AY+ + I++D+ LGTA++DMYAKCG IETA VF MP +DV +T+LI GLA Q+
Sbjct: 312 AYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAE 371
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
+A++ F M ++GV P+ SMS+ YGI+P ++HYG L
Sbjct: 372 NALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGL 431
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
VD+LGRAG + A+++++ MP+ PD +VLG LL ACR+HG+++ + + L+E H
Sbjct: 432 VDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHS 491
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +VLLSNIY S+++W ++ R M + +RK PGCS IEV GVV EFV G+ ++
Sbjct: 492 GTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSS 551
Query: 460 EIVLLLFGIDKHLKSLCFFDDGNEV 484
EI +L + LK+ + D +EV
Sbjct: 552 EINEMLEDMISKLKNAGYVPDKSEV 576
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 191/395 (48%), Gaps = 57/395 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI + + +G +DPF KI+ FCS + G L + +F + T++ N++I
Sbjct: 1 MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG +KN +A Y++M+ +P+ YTF + ++C ++S G H +LG+
Sbjct: 61 RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTKLGFA 117
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S + N L+++Y+ C C+ ARK+FD ++ V+SW ++I +A+ Q + A ++FD+M
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ V +PN +V LTACA L +
Sbjct: 178 MKSENV------------------------------KPNEVTLVNVLTACARARDLAMVK 207
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y+D +G ++L T ++D+Y KCGC++ A +FD +++F++ +I+G
Sbjct: 208 RIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDS 267
Query: 301 QSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG---------------VQHYG 337
A+ LF MQ +G+ ++ + + + +E G V
Sbjct: 268 NYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGT 327
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
LVD+ + G +E A +V EMP E D AL+
Sbjct: 328 ALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALI 361
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/465 (38%), Positives = 261/465 (56%), Gaps = 64/465 (13%)
Query: 53 TFIWNTMIRGFAE-KNEPI----KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
+F+WNT+IR + + +P +++ +M P+ +TF F+L++ A S L +G
Sbjct: 24 SFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLG 83
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
HAQ++R G FV TSLI+ Y+ S
Sbjct: 84 RSVHAQILRFGLAIDPFV-------------------------------QTSLISMYSSS 112
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF---RPNHAGIV 224
G + +AR +F MPE+N +SWS MINGYV+ +KEAL F MQ+ G RPN +
Sbjct: 113 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 172
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PN 283
G L AC LGAL+ G+W HAY+D+ G+ +D++LGTA+IDMYAKCG +E A VF ++ PN
Sbjct: 173 GVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPN 232
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------------- 320
+DV A++++ISGLA H + + LF +M +GV PN
Sbjct: 233 KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDY 292
Query: 321 -ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
M+E Y I P +QHYGC+VDL GRAG ++ A VV+ MP+EPD V GALL+ R+HG
Sbjct: 293 LRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
D++ + ++ L+E + G +VLLSN+YA +W V VR ME ++KVPGCSLI
Sbjct: 353 DIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLI 412
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EV GV+ EF G+ ++ +I ++L I + LK + + EV
Sbjct: 413 EVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEV 457
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 135/305 (44%), Gaps = 47/305 (15%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+ + + + G DPF +I S+S + D++ LF + R W+ MI G+
Sbjct: 84 RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARN--LFAVMPERNVISWSCMINGYV 141
Query: 65 EKNEPIKAFALYKQMLR---SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ +A AL+++M +D PN +T S +L AC L G HA + + G
Sbjct: 142 RCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM-P 200
Query: 122 YDFVL-NGLLHLYATCNCMDPARKLF-DMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
D VL L+ +YA C ++ A +F ++ N+DV++W+++I+G A G
Sbjct: 201 VDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHG----------- 249
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ E+ +S MIN G RPN + AC G + +G
Sbjct: 250 LAEECVGLFSKMINQ--------------------GVRPNAVTFLAVFCACVHGGLVSEG 289
Query: 240 RWIHAYVDRNGIELDIILGTA----IIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLIS 294
+ Y+ R + II ++D+Y + G I+ A +V SMP DV + +L+S
Sbjct: 290 K---DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLS 346
Query: 295 GLANH 299
G H
Sbjct: 347 GSRMH 351
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/511 (34%), Positives = 273/511 (53%), Gaps = 56/511 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ +KQIQ+ + + P GK++ C+ + L + RLF+ ++ F++NT+I
Sbjct: 18 LRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG ++ + P A L+ +M R LP++++F+F+L+A A+ L GL H + G
Sbjct: 78 RGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGL 137
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---------------------------- 151
+S+ FV L+ +YA C C+ ARK+FD +
Sbjct: 138 DSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRC 197
Query: 152 ---RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
R++ SW ++ GY K+G++ +AR++F KMP K+ VSWS MI G+ F +A F
Sbjct: 198 MPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFF 257
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
++ G RPN + G L+ACA GA + GR +H +V+++G I + A+ID Y+KC
Sbjct: 258 REVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKC 317
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G ++ A VFD+M R ++T++I+G+A H AI LF M+ + P+
Sbjct: 318 GNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISIL 377
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
M YGIEP ++HYGC+VDL GRAG L+ A V +MPI P+
Sbjct: 378 YACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPN 437
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ V LL AC +HG++ L + L E ++ G HVLLSNIYA +W V +RR
Sbjct: 438 DIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRS 497
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
M ++K PG S+IEV+ ++ FV+GE+ N
Sbjct: 498 MTHQRLKKTPGWSMIEVNRIIYSFVAGEKQN 528
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 177/519 (34%), Positives = 279/519 (53%), Gaps = 43/519 (8%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++++I +HL VSG L P F ++ RL + + T N ++R
Sbjct: 32 RLREIHAHLLVSGRLASP---SHHADFVASLASSSHLSYARLLLPQRPATLLAHNGLLRA 88
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC-------------ADTSCLFVGLI 109
A P AFA ++++ P++Y+F+F++RA D + +
Sbjct: 89 LARGPCPGLAFAAFREL---PLAPDHYSFTFLVRAATSLAAAASATPVPTDVAVNLLAGS 145
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA + G + V +G + +YA + R F V+ DV+ T+++ + G
Sbjct: 146 VHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGD 205
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ AR++FD MP+++ V+W+AM+ GYV+V +EAL F+ MQ G + +V LTA
Sbjct: 206 VDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTA 265
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA +GAL++G W+H+YV G+ + + LGTA++DMY+KCG + + VF++M R+++ +
Sbjct: 266 CAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTW 325
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
TS +SGLA + +ELF RM+ G+ PN +SM +
Sbjct: 326 TSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKD 385
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+ +EP ++HYGC+VDL GRAG L+ A + MP+EP V GALLNA R+H +VDLGK
Sbjct: 386 KHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGK 445
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ L E ++ HVLLSNIYA + W GV KVR M+ V+K+PGCS IEVDG V
Sbjct: 446 HAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKV 505
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EF G +++ ++I +L + L+ + + EV
Sbjct: 506 HEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEV 544
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 179/515 (34%), Positives = 284/515 (55%), Gaps = 37/515 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+QIKQ + L + + P + K++ + + LS+ ++LF + FI+NTMI
Sbjct: 29 MQQIKQTHAQLITTALISHPVSANKLLKLAACAS---LSYAHKLFDQIPQPDLFIYNTMI 85
Query: 61 RGFAEKNEPIKAFALYKQMLRSDF--LPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+ + + + L D PN Y+F F AC + + G +++G
Sbjct: 86 KAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVG 145
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
E+ FV+N L+ +Y + ++K+F +V+RD+ SW +LI Y SG +S+A+++FD
Sbjct: 146 LENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFD 205
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
M E++ VSWS +I GYVQV F EAL+ F+ M G +PN +V AL AC+ L ALDQ
Sbjct: 206 GMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQ 265
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV-FDSMPNRDVFAYTSLISGLA 297
G+WIHAY+ + I+++ L +IIDMYAKCG IE+A V F+ + V+ + ++I G A
Sbjct: 266 GKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFA 325
Query: 298 NHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGV 333
H AI +F +M++E + PN+ M Y I P +
Sbjct: 326 MHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEI 385
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLL R+G+L+ A+ ++ MP+ PD + GALLNACR++ D++ G +
Sbjct: 386 EHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKG 445
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV----RKVPGCSLIEVDGVVCEFV 449
+H G HVLLSNIY+++ +WN +R E NE+ +K+PGCS IE+ G +F+
Sbjct: 446 MDPNHIGCHVLLSNIYSTSGRWNEARILR---EKNEISRDRKKIPGCSSIELKGTFHQFL 502
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
G++++ EI L + LKS + + E+
Sbjct: 503 VGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGEL 537
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 187/501 (37%), Positives = 272/501 (54%), Gaps = 61/501 (12%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + QI + + V+G + + VG++I S S G L + ++LF + I N ++R
Sbjct: 26 RTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSICNHVLR 85
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G A+ +P K ALY +M + P+ YTF+F+L+AC+ G H +V+R G+
Sbjct: 86 GSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLL 145
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
++V N L+ +A C + A +LFD S ++W+S+ +GYAK G+I A ++FD+MP
Sbjct: 146 NEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMP 205
Query: 182 -------------------------------EKNAVSWSAMINGYVQVDLFKEALEHFNY 210
EK+ V+W+AMI+GYV KEAL F
Sbjct: 206 DKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKE 265
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGT----AIIDMY 265
M+ G P+ I+ L+ACA LG L+ G+ +H Y+ + + I +GT A+IDMY
Sbjct: 266 MRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMY 325
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--- 322
AKCG I+ A VF M +RD+ + +LI GLA H S +E+F MQ V PNE
Sbjct: 326 AKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALHHAEGS-VEMFEEMQRLKVWPNEVTFI 384
Query: 323 ---------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
M ++Y IEP ++HYGC+VD+LGRAG+LE A V M I
Sbjct: 385 GVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKI 444
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
EP+ V LL AC+++G+V+LGK E L+ D G +VLLSNIYAST QW+GV+KV
Sbjct: 445 EPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKV 504
Query: 422 RRGMEDNEVRKVPGCSLIEVD 442
R+ +D V+K G SLIE D
Sbjct: 505 RKMFDDTRVKKPTGISLIEED 525
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 181/474 (38%), Positives = 259/474 (54%), Gaps = 35/474 (7%)
Query: 31 SASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90
S + +G L H LF F+W +I A + A + Y QML PN +T
Sbjct: 64 SYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFT 123
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
S +L+AC L H+ I+ G S+ +V GL+ YA + A+KLFD
Sbjct: 124 LSSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMP 179
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN- 209
R ++S+T+++ YAK G + AR +F+ M K+ V W+ MI+GY Q EAL F
Sbjct: 180 ERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRK 239
Query: 210 ------YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
RPN +V L++C +GAL+ G+W+H+YV+ NGI++++ +GTA++D
Sbjct: 240 MMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVD 299
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MY KCG +E A VFD M +DV A+ S+I G H S A++LF M GV P++
Sbjct: 300 MYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDIT 359
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM + YG+EP V+HYGC+V+LLGRAG ++ A +VR M
Sbjct: 360 FVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSM 419
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + G LL ACR+H +V LG+E E LV L G +VLLSN+YA+ W GV
Sbjct: 420 EVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVA 479
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
KVR M+ + V K PGCS IEV V EFV+G+R + ++I +L ++ LK
Sbjct: 480 KVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLK 533
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
L YA G + + +F + P N W+ +IN + DLF AL +++ M +PN
Sbjct: 61 LQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPN 120
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
+ L AC L R +H++ + G+ + + T ++D YA+ G + +A +FD
Sbjct: 121 AFTLSSLLKAC----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFD 176
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339
+MP R + +YT++++ A H A LF M ++ VV M + G +GC
Sbjct: 177 AMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMID------GYAQHGCP 230
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+ L + + P+ + A+L++C G ++ GK V S VE +
Sbjct: 231 NEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK-WVHSYVENN 285
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IHA + R G+ IL + YA G + + ++F PN +VF +T +I+ A+ D
Sbjct: 42 IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101
Query: 302 SASAIELFMRMQLEGVVPN-------------------ESMSEIYGIEPGVQHYGCLVDL 342
A+ + +M + PN S + +G+ + LVD
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDA 161
Query: 343 LGRAGMLEAAKKVVREMP 360
R G + +A+K+ MP
Sbjct: 162 YARGGDVASAQKLFDAMP 179
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 276/482 (57%), Gaps = 29/482 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTMIR 61
+++QI + + + L F V ++I FCS S + G L + +F +Q+ +FI+ +I+
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIK 80
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF--ILRACADTSCLFVGLICHAQVIRLGW 119
GF++ + P+++ LY +ML + FS +L+AC G H QV++
Sbjct: 81 GFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
FV N ++ +Y ++ AR++FD NRDV+SW S+I GY K+G+I +A+++F+
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFET 200
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +K+ V+W++MI+ YVQ +AL+ F M G RP+ IV L+A A LG +++G
Sbjct: 201 MSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEG 260
Query: 240 RWIHAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLA 297
+W+HAYV N IEL +G+A+IDMY+KCG IE A VF S+ + R++ + S+ISGLA
Sbjct: 261 KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLA 320
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H + A+++F+ M+ + PN ESM E Y I P +
Sbjct: 321 IHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRI 380
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
QHYGC++DL GRAG LE A V++ MP E D A+L+A HG +++GK +E
Sbjct: 381 QHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIE 440
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ D +VLLSNIYA +W+ V K+R M V+K+ GCS + V+G V EF+ G+
Sbjct: 441 LAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKE 500
Query: 454 TN 455
+
Sbjct: 501 LD 502
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 261/473 (55%), Gaps = 24/473 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F + ++NT++ + + + A+ +ML+ P+ T +
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC++ + G CH V+R G E +D V N ++++Y C + A ++FD +N+ +
Sbjct: 349 SACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV 408
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW SLI G+ ++G + A ++F MP+ + VSW+ MI VQ +FKEA+E F MQ G
Sbjct: 409 SWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEG 468
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ +VG +AC +LGALD +WIH Y+ + I D+ LGTA++DM+A+CG ++A
Sbjct: 469 ITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAM 528
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
VF+ M RDV A+T+ I +A AIELF M +G+ P+
Sbjct: 529 QVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGG 588
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM +IYGI P HYGC+VDLLGRAG+L A ++ M +EP++ + G+L
Sbjct: 589 LVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSL 648
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACRVH +VD+ E + E + G+HVLLSNIYAS +W+ V KVR +++
Sbjct: 649 LAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAH 708
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
K+PG S IE++G + EF +G+ ++ M I +L I L+ + + D V
Sbjct: 709 KMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNV 761
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 37/327 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSA----SDIGDLSHGYRLFVCLQ--YRTTF 54
M ++KQ+ S +T +G P ++ +I C+ + LF+ T +
Sbjct: 46 MTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHY 105
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+++++IRGF+ KA +++Q++ +P+N+TF F+L AC ++ L G H +
Sbjct: 106 MFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAI 165
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+++G+E FV N L+H Y + G+I R
Sbjct: 166 VKMGFERDMFVENSLIHF-------------------------------YGECGEIDCMR 194
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++FDKM E+N VSW+++I GY + +KEA+ F M G RPN +VG ++ACA L
Sbjct: 195 RVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQ 254
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L G + + +E++ ++ A++DMY KCG I+ A +FD ++++ Y +++S
Sbjct: 255 DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMS 314
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE 321
+ + + M G P+
Sbjct: 315 NYVRQGLAREVLAVLGEMLKHGPRPDR 341
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 176/383 (45%), Gaps = 52/383 (13%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q+ + G D F +I F + G++ R+F + R W ++I G+A+
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHF--YGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAK 217
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+ +A +L+ +M+ PN+ T ++ ACA Q ++LG +
Sbjct: 218 RGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL-----------QDLQLGEQ----- 261
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
C C+ ++ VN +++ +L++ Y K G I AR++FD+ +KN
Sbjct: 262 ---------VCTCIGE----LELEVNALMVN--ALVDMYMKCGAIDKARKIFDECVDKNL 306
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V ++ +++ YV+ L +E L M G RP+ ++ A++AC+ L + G+W H Y
Sbjct: 307 VLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGY 366
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V RNG+E + AII+MY KCG E AC VFD M N+ ++ SLI+G + SA
Sbjct: 367 VLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESA 426
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IE 362
++F M +V + ++ L + M + A ++ R M I
Sbjct: 427 WKIFSAMPDSDLVS----------------WNTMIGALVQESMFKEAIELFRVMQSEGIT 470
Query: 363 PDNYVLGALLNACRVHGDVDLGK 385
D + + +AC G +DL K
Sbjct: 471 ADKVTMVGVASACGYLGALDLAK 493
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 176/469 (37%), Positives = 274/469 (58%), Gaps = 51/469 (10%)
Query: 53 TFIWNTMIRGF------AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFV 106
+F+WN +IR +++ PI ++Y +M P+ +TF F+L + + L +
Sbjct: 24 SFLWNIIIRAIVHNVSSPQRHSPI---SVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPL 80
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
G HAQ++ G + FV LL++Y++C + A+++FD S ++D+ +W S++N YAK
Sbjct: 81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAK 140
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-----FRPNHA 221
+G I AR++FD+MPE+N +SWS +INGYV +KEAL+ F MQL RPN
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
+ L+AC LGAL+QG+W+HAY+D+ +E+DI+LGTA+IDMYAKCG +E A VF+++
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 282 -PNRDVFAYTSLISGLANHDQSASAIELFMRMQL-EGVVPN------------------- 320
+DV AY+++I LA + + +LF M + + PN
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINE 320
Query: 321 -----ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
+ M E +GI P +QHYGC+VDL GR+G+++ A+ + MP+EPD + G+LL+
Sbjct: 321 GKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGS 380
Query: 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
R+ GD+ + ++ L+E + G +VLLSN+YA T +W ME + KVPG
Sbjct: 381 RMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRW---------MEG--INKVPG 429
Query: 436 CSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
CS +EV+GVV EFV G+ + E I +L I + L+ + D EV
Sbjct: 430 CSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 478
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 40/269 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML-----RSDFLPNNYT 90
G + +LF + R W+ +I G+ + +A L+++M + PN +T
Sbjct: 142 GLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFT 201
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFD-M 148
S +L AC L G HA + + E D VL L+ +YA C ++ A+++F+ +
Sbjct: 202 MSTVLSACGRLGALEQGKWVHAYIDKYHVE-IDIVLGTALIDMYAKCGSLERAKRVFNAL 260
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+DV +++++I A G Q+F +M + ++
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNIN--------------------- 299
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAK 267
PN VG L AC G +++G+ + ++ GI I ++D+Y +
Sbjct: 300 ---------PNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGR 350
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISG 295
G I+ A S SMP DV + SL+SG
Sbjct: 351 SGLIKEAESFIASMPMEPDVLIWGSLLSG 379
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 169/466 (36%), Positives = 266/466 (57%), Gaps = 29/466 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL ++F ++ + WN+MI GF +K P KA L+K+M D ++ T +L
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 96 RACADTSCLFVGL-ICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRD 153
ACA L G +C I + + L N +L +Y C ++ A++LFD +D
Sbjct: 240 SACAKIRNLEFGRQVC--SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 297
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
++WT++++GYA S AR++ + MP+K+ V+W+A+I+ Y Q EAL F+ +QL
Sbjct: 298 NVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL 357
Query: 214 -CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+ N +V L+ACA +GAL+ GRWIH+Y+ ++GI ++ + +A+I MY+KCG +E
Sbjct: 358 QKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLE 417
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
+ VF+S+ RDVF ++++I GLA H A+++F +MQ V PN
Sbjct: 418 KSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477
Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
M YGI P +HY C+VD+LGR+G LE A K + MPI P V
Sbjct: 478 HTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 537
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
GALL AC++H +++L + L+E ++G HVLLSNIYA +W V ++R+ M
Sbjct: 538 GALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 597
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
++K PGCS IE+DG++ EF+SG+ + + E++ L + + LKS
Sbjct: 598 GLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKS 643
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 204/434 (47%), Gaps = 62/434 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q+KQ H+ +GT DP++ K+ + S L + ++F + +F WNT+I
Sbjct: 43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102
Query: 61 RGFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R +A +P+ + + M+ S PN YTF F+++A A+ S L +G H ++
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S FV N L+H Y +C +D A K+F +DV+SW S+ING+ + G
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS---------- 212
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
P+K ALE F M+ + +H +VG L+ACA + L+ G
Sbjct: 213 -PDK--------------------ALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R + +Y++ N + +++ L A++DMY KCG IE A +FD+M +D +T+++ G A
Sbjct: 252 RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 311
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ +A E+ M + +V + L+ + G A V E+
Sbjct: 312 EDYEAAREVLNSMPQKDIVA----------------WNALISAYEQNGKPNEALIVFHEL 355
Query: 360 PIEP----DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY------ 409
++ + L + L+AC G ++LG+ + S +++ HV + I+
Sbjct: 356 QLQKNMKLNQITLVSTLSACAQVGALELGR-WIHSYIKKHGIRMNFHVTSALIHMYSKCG 414
Query: 410 ---ASTEQWNGVEK 420
S E +N VEK
Sbjct: 415 DLEKSREVFNSVEK 428
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GDL +F ++ R F+W+ MI G A +A ++ +M ++ PN TF+
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFT 470
Query: 93 FILRACADT 101
+ AC+ T
Sbjct: 471 NVFCACSHT 479
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 181/495 (36%), Positives = 279/495 (56%), Gaps = 36/495 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG--DLSHGYRLFVCLQYRTTFIWNT 58
MK +KQ + + +G + FA+ +++ FCS+ L++ R+F +Q T I+NT
Sbjct: 18 MKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQNPTVCIYNT 77
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+I+ F N+ A ++ +ML+S+ P+NYT ++L+AC G + H +LG
Sbjct: 78 LIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGYSSKLG 137
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+V N L+ +Y + AR +FD + +V+SW+ +I+GYAK G + AR FD
Sbjct: 138 LVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFD 197
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+ PEK+ W AMI+GYVQ FKE+L F MQL P+ + V L+ACA LGAL+
Sbjct: 198 EAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEI 257
Query: 239 GRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G WIH ++++ + L + L T+++DMYAKCG +E A +FDSM RDV + ++ISG+A
Sbjct: 258 GVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMA 317
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H A++LF M+ GV P+ + M +Y I P
Sbjct: 318 MHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKS 377
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPI----EPDNYVLGALLNACRVHGDVDLGKETVE 389
+HYGCLVDLL RAG+ E A ++R++ + A L+AC HG+ L + E
Sbjct: 378 EHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAE 437
Query: 390 SLVERSLD---HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+++ LD H GV+VLLSN+YA++ + + +VR M+ K PGCS +E+DGV+
Sbjct: 438 KVLQ--LDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSSVEIDGVIS 495
Query: 447 EFVSGERTNVLMEEI 461
EF++GE+T+ MEEI
Sbjct: 496 EFIAGEKTHPQMEEI 510
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 175/517 (33%), Positives = 292/517 (56%), Gaps = 47/517 (9%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MKQ KQI +H + + +I+ F +AS GD + LF + F +N++I
Sbjct: 37 MKQTKQIHAHAIANNLTRFSYISSRILAFFAASPRGDFRYAETLFTHMPNPNIFDYNSII 96
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ ++ K+ +++ +ML + PN++TF+ ++++C S L QV L +
Sbjct: 97 TSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSL-------EQVFTLTMK 149
Query: 121 SYD----FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
S + + ++ ++++++ + AR++FD S NR+V+ WTSL++GY G ++ R +
Sbjct: 150 SGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDV 209
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-----LCGFRPNHAGIVGALTACA 231
FDKMP++N S SAM++GYV+ F E ++ F ++ + N A +V L AC
Sbjct: 210 FDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACT 269
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
+GA ++G+WIH+YV+ NG+E D+ LGTA+ID YAKCG ++ A VFD M +DV +++
Sbjct: 270 VMGAFEEGKWIHSYVEENGLEYDLELGTALIDFYAKCGWVKDAEKVFDKMLVKDVATWSA 329
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIY 327
+I GLA + + A+ELF +M+ G PNE MSE Y
Sbjct: 330 MILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESSRLFGIMSEKY 389
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
I P ++HYGC+VD+L R+G ++ A + M IEPD + G+LLN C +HG +LG++
Sbjct: 390 NITPSIEHYGCIVDILARSGQVKKALIFINSMHIEPDGAIWGSLLNGCLMHGHYELGQKV 449
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ L+E +H G +VLL+N+YA+ +W GV +VR+ M+D V V G S IE+D + +
Sbjct: 450 GKYLIEFDPEHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVVIVYGWSFIEIDQTLHK 509
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLK-------SLCF 477
F + ++ + EI +L + K ++ S+CF
Sbjct: 510 FSADDKCCLYSGEIYEVLSHLGKKVEEFSGDKDSVCF 546
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 187/502 (37%), Positives = 273/502 (54%), Gaps = 61/502 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ +KQI + + V+G + + VG++I S S G L + ++LF + I N ++
Sbjct: 25 IRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVL 84
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG A+ +P K +LY +M + P+ YTF+F+L+AC+ G H +V+R G+
Sbjct: 85 RGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFV 144
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
++V N L+ +A C + A +LFD S ++W+S+ +GYAK G+I A ++FD+M
Sbjct: 145 LNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM 204
Query: 181 P-------------------------------EKNAVSWSAMINGYVQVDLFKEALEHFN 209
P EK+ V+W+AMI+GYV KEAL F
Sbjct: 205 PYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFK 264
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGT----AIIDM 264
M+ G P+ I+ L+ACA LG L+ G+ +H Y+ + + I +GT A+IDM
Sbjct: 265 EMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDM 324
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-- 322
YAKCG I+ A VF + +RD+ + +LI GLA H S IE+F MQ V PNE
Sbjct: 325 YAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEGS-IEMFEEMQRLKVWPNEVTF 383
Query: 323 ----------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
M ++Y IEP ++HYGC+VD+LGRAG LE A V M
Sbjct: 384 IGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMK 443
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420
IEP+ V LL AC+++G+V+LGK E L+ D G +VLLSNIYAST QW+GV+K
Sbjct: 444 IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQK 503
Query: 421 VRRGMEDNEVRKVPGCSLIEVD 442
VR+ +D V+K G SLIE D
Sbjct: 504 VRKMFDDTRVKKPTGVSLIEED 525
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/507 (33%), Positives = 270/507 (53%), Gaps = 57/507 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSAS-DIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+I+Q + + +G D F+ K++ F + + + +S+ + + ++ F N++IR
Sbjct: 24 EIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIR 83
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+A + P A ++++ML P+ Y+F+F+L+ACA G H ++ +
Sbjct: 84 AYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVT 143
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL--------------------- 160
FV N L+++Y + ARK+ D RD +SW SL
Sbjct: 144 DVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEME 203
Query: 161 ----------INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
I+GYA +G + AR++FD MP K+ VSW+AM+ Y V + E LE FN
Sbjct: 204 ERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNM 263
Query: 211 M-QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M RP+ +V L+ACA LG+L QG W+H Y+D++GIE++ + TA++DMY+KCG
Sbjct: 264 MLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCG 323
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------- 320
I+ A VF RDV + S+I+GL+ H A+E+F M EG PN
Sbjct: 324 KIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLS 383
Query: 321 ---------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
E M+ +YGIEP ++HYGC+VDLLGR G E A+++V E+P + +
Sbjct: 384 ACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEAS 443
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
+L +LL AC+ G ++ + L+E + +V +SN+YAS +W+ +VR M
Sbjct: 444 ILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKM 503
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGE 452
V+K PGCS+IEVDGVV EF++GE
Sbjct: 504 RAERVKKNPGCSMIEVDGVVHEFLAGE 530
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/504 (34%), Positives = 266/504 (52%), Gaps = 57/504 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ H T G D + ++ S+ G L ++F + ++ W TMI +A
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNM--YSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + P +A L+++M + PN T +L ACA + L H + G +
Sbjct: 215 QWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTV 274
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ + L+ +Y C C +AR +F+KMPEKN
Sbjct: 275 LTSALMDVYCKCGC-------------------------------YPLARDLFNKMPEKN 303
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
W+ MING+V+ ++EAL FN MQL G + + + L AC LGAL+ G+W+H
Sbjct: 304 LFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHV 363
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+++ IE+D+ LGTA++DMYAKCG IE+A VF MP +DV +T+LI GLA Q
Sbjct: 364 YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLK 423
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ELF MQ+ V P+ SM YGI+P ++HYGC+V
Sbjct: 424 ALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 483
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
D+LGRAG + A+ +++ MP+ PD +VL LL+ACR+HG++ + + + L+E + G
Sbjct: 484 DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGG 543
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
+VLLSNIY+S + W +K+R M + ++K PGCS IEV GVV EFV G+ ++ E
Sbjct: 544 TYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSE 603
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEV 484
I L + + LKS + D +EV
Sbjct: 604 IYETLDDMMRRLKSAGYVPDKSEV 627
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 191/395 (48%), Gaps = 58/395 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI + + + DPF+ KI+ FC+ D G L + +F + TTF N++I
Sbjct: 53 MSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSII 112
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+ KN P +A Y+ M+ P+ +TF + ++C C L CH+ +LG+
Sbjct: 113 RGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG-VLCEGKQLHCHS--TKLGFA 169
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S ++ N L+++Y+ C C+ AR++FDKM
Sbjct: 170 SDAYIQNTLMNMYSNCGCL-------------------------------VSARKVFDKM 198
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ VSW+ MI Y Q DL EA++ F M++ +PN +V LTACA L+ +
Sbjct: 199 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAK 258
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H Y+D GI +L +A++D+Y KCGC A +F+ MP +++F + +I+G
Sbjct: 259 QVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDS 318
Query: 301 QSASAIELFMRMQLEGVVPNE-SMS----------------------EIYGIEPGVQHYG 337
A+ LF MQL GV ++ +M+ E IE V
Sbjct: 319 DYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGT 378
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
LVD+ + G +E+A +V +EMP E D AL+
Sbjct: 379 ALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALI 412
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 274/471 (58%), Gaps = 31/471 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ +++ + + +G +DP+ + +++G + ++F + R WN MI
Sbjct: 124 VREGEKVHAFVVKTGLEFDPYVCNSFMDM--YAELGLVEGFTQVFEEMPDRDAVSWNIMI 181
Query: 61 RGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
G+ +A +Y++M S+ PN T L ACA L +G H I
Sbjct: 182 SGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIH-DYIASEL 240
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ + N LL +Y C + AR++FD ++V WTS++ GY GQ+ AR +F++
Sbjct: 241 DLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFER 300
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
P ++ V W+AMINGYVQ + F+E + F MQ+ G +P+ +V LT CA GAL+QG
Sbjct: 301 SPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQG 360
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WIH Y+D N I++D ++GTA+I+MYAKCGCIE + +F+ + +D ++TS+I GLA +
Sbjct: 361 KWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMN 420
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ + A+ELF MQ G+ P++ SMS +Y IEP ++H
Sbjct: 421 GKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEH 480
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL---GALLNACRVHGDVDLGKETVESLV 392
YGC +DLLGRAG+L+ A+++V+++P + + ++ GALL+ACR +G++D+G+ +L
Sbjct: 481 YGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALA 540
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ +H LL++IYAS ++W V KVR M+D ++KVPG S IEVDG
Sbjct: 541 KVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDG 591
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 183/388 (47%), Gaps = 50/388 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQIQ+H+ G D + K++ F S +GD ++ R+F + + FI+N MI
Sbjct: 21 MSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F + A +L++Q+ P+NYT+ ++L+ + G HA V++ G E
Sbjct: 81 KAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLE 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N + +YA ++ ++F+ +RD +SW +I+GY + + A ++ +M
Sbjct: 141 FDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRM 200
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
W+ E+ E +PN A +V L+ACA L L+ G+
Sbjct: 201 -------WT-------------ESNE----------KPNEATVVSTLSACAVLRNLELGK 230
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y+ + ++L I+G A++DMY KCG + A +FD+M ++V +TS+++G
Sbjct: 231 EIHDYI-ASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICG 289
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
Q A LF R +V +M Y VQ E + EM
Sbjct: 290 QLDQARNLFERSPSRDIVLWTAMINGY-----VQF-----------NRFEETIALFGEMQ 333
Query: 361 I---EPDNYVLGALLNACRVHGDVDLGK 385
I +PD +++ LL C G ++ GK
Sbjct: 334 IRGVKPDKFIVVTLLTGCAQSGALEQGK 361
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 98/200 (49%), Gaps = 7/200 (3%)
Query: 130 LHLYATCNCMDPARKL------FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ L +C M +++ + +RD ++ + + G + A ++F+ + +
Sbjct: 12 ISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDP 71
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ ++ MI +V+ F+ A+ F ++ G P++ L +G + +G +H
Sbjct: 72 SLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVH 131
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
A+V + G+E D + + +DMYA+ G +E VF+ MP+RD ++ +ISG +
Sbjct: 132 AFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFE 191
Query: 304 SAIELFMRMQLEG-VVPNES 322
A++++ RM E PNE+
Sbjct: 192 EAVDVYRRMWTESNEKPNEA 211
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/493 (35%), Positives = 275/493 (55%), Gaps = 29/493 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFV--CLQYRTTFIWNT 58
+ QIKQ + + V G D ++ F + S L Y L + + + T F N
Sbjct: 44 ITQIKQAHARILVLGLANDGRITSHLLAFLAISS-SSLPSDYALSIYNSISHPTVFATNN 102
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
MIR F + + P + +LY M RS PN +T +F+L+AC++ + G VI+L
Sbjct: 103 MIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKL 162
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ FV N L+HLY TC ++ A+++FD + +RDV+SW S+I G+ + GQIS+A+++
Sbjct: 163 GFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKL 222
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F +MPEK+ +SW +I+G VQ ++AL++F + RPN A +V L A A LG L
Sbjct: 223 FVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTL 282
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ G+ IH+ + + LGTA++DMYAKCGCI+ + +FD MP +D +++ +I GL
Sbjct: 283 EYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGL 342
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
A H A+ LF + +G P + M++ YGIEP
Sbjct: 343 ATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPE 402
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLL RAG + A +++ MP PD + ++L +C+VHG ++LG+E L+
Sbjct: 403 MEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLI 462
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+ H G +V L+ I+A +W V KVRR M + K+ G SLIE +G V FV+G+
Sbjct: 463 QMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGD 522
Query: 453 RTNVLMEEIVLLL 465
+ + EI +L
Sbjct: 523 KEHERTTEIYKML 535
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 278/505 (55%), Gaps = 33/505 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD---LSHGYRLFVCLQYRTTFIWN 57
++ +KQI +HL + P+A+ ++ + S S+ +F LQ R F++N
Sbjct: 20 VQHLKQIHAHLLKTYLSQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFMYN 79
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT--SCLFVGLICHAQVI 115
+MIRG+ P +A Y ++ FL N YTF +++ACA +G + HA VI
Sbjct: 80 SMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVI 139
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
LG+E+ FV++ L+ Y+ + + AR LFD S +DV+ WT +++GY K G I AR
Sbjct: 140 VLGYENDAFVVSALVEFYSLFD-LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARV 198
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE+N +SWSAM+ Y +V F+E L F MQ PN + I LTACA LGA
Sbjct: 199 LFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASVLTACAHLGA 258
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
+ QG W+H+Y R G++ + IL TA++DMY+KCG IE+A VF+ + N+D A+ ++ISG
Sbjct: 259 ITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISG 318
Query: 296 LANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEP 331
A ++ELF +M G E+ M +Y ++P
Sbjct: 319 FAMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQP 378
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETV 388
+HY C+VDL+ RAGM+E A+K V E D V GA+L+ACR + ++++G
Sbjct: 379 QFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIW 438
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
L L G VL NI++ + ++VR+ + +K+PGCS+I VDG V EF
Sbjct: 439 TKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARSKKIPGCSVIVVDGAVQEF 498
Query: 449 VSGERTNVLMEEIVLLLFGIDKHLK 473
++G+ ++ ++ I +L + K +K
Sbjct: 499 LAGDLSHPQVQHICEMLGFLSKMVK 523
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/430 (38%), Positives = 250/430 (58%), Gaps = 24/430 (5%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M+ PN +T S +++ACA + L G H +I++G+ES V L+H+YA C
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
++ A +FD R +W ++I G+A++ + A ++F +M E++ VSW+A+I GY Q
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
E+L FN M+ G + + + L+ACA L AL+ GR HAYV ++G LDI++G
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+A++DMYAK G +E AC VFD MP R+ ++ S+I+G A H + A+ LF +M G+
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240
Query: 319 PNES------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PNE M++ YGI P V HY C++DLLGRAG L+ A+
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ MP+EPD V GALL ACR+HG+ +L K E L+ + G++VLLSNIYA+ Q
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
W+ KVR+ M+D V K PG S IEV ++ FV+GE ++ ++EI L + + +K+
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420
Query: 475 LCFFDDGNEV 484
+ + N V
Sbjct: 421 AGYVPNKNFV 430
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 15/293 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +F + R+T WN MI G A+ + KA L+ +M D + +++ ++
Sbjct: 59 GSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVV----SWTAVI 114
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--- 152
A L Q+ + G +S F++ +L A ++ R+ V
Sbjct: 115 AGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFA 174
Query: 153 -DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
D++ ++L++ YAKSG + A Q+FDKMP++N VSW+++I G Q +A+ F M
Sbjct: 175 LDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQM 234
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGC 270
G +PN VG L+AC+ G +++GR + +N GI D+ T +ID+ + GC
Sbjct: 235 LQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGC 294
Query: 271 IETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIE-----LFMRMQLEGV 317
++ A + + MP DV + +L+ H + A L M +Q+ G+
Sbjct: 295 LDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGI 347
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 14/183 (7%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+Q +++ SG D ++ + S G + ++F + R WN++I G A
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKS--GSMEDACQVFDKMPQRNEVSWNSIITGCA 219
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQ-VIRLGWESYD 123
+ A L++QML++ PN +F +L AC+ T GL+ + L ++Y
Sbjct: 220 QHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHT-----GLVNEGRGYFNLMTQNYG 274
Query: 124 FV-----LNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQISIARQMF 177
V ++ L C+D A + M V DV W +L+ G +A+++
Sbjct: 275 IVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIA 334
Query: 178 DKM 180
+ +
Sbjct: 335 EHL 337
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/495 (33%), Positives = 284/495 (57%), Gaps = 40/495 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDPF-----------AVGKIIGFCSASDIGDLS-HGYRL--FV 46
+KQ+ Q+ +H +G LW A ++ +AS + GY L F
Sbjct: 28 LKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPTTPAALTGYALSVFN 87
Query: 47 CLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFV 106
+ +TF +NTMIR + P+ A ++ +M R P+ +TF F L+AC+ L +
Sbjct: 88 RIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSLLPALSL 147
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
H+Q + G+ + FV N L+H+Y+ + A ++F+ + +DV+S+ +LI G+ K
Sbjct: 148 AQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGFIK 207
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQV-DLFKEALEHFNYMQLCGFRPNHAGIVG 225
G AR++FDKMP ++AVSW ++ GY Q DL +A++ FN M + RP++ +V
Sbjct: 208 VGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVS 267
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
AL+ACA LG L+QG+ IH Y+ +N I ++ L T ++D+YAKCGCIETA +F+S P+++
Sbjct: 268 ALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKN 327
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------E 321
+F + +L+ GL H + ++ F RM G+ P+ +
Sbjct: 328 LFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQ 387
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
M +Y + ++HYGC+ DLLGRAG++ A +++ MP+ D +V G +L CR+HG+V
Sbjct: 388 EMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVLGGCRIHGNV 447
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
++ ++ E+++ + + +GV+ ++++IYA+ +W V ++RR M +V+K PGCSL+++
Sbjct: 448 EIAEKAAENVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKNPGCSLVQL 507
Query: 442 -DGVVCEFVSGERTN 455
+GV FV+G ++
Sbjct: 508 NNGVFHGFVAGSASS 522
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 182/499 (36%), Positives = 275/499 (55%), Gaps = 62/499 (12%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD------LSHGYRLFVCLQYRTTFIWN 57
+KQI + + V+G + + K++ + S +G + + ++F + TF+WN
Sbjct: 17 LKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWN 76
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
T IRG ++ ++P+ A ALY QM + P+N+TF F+L+AC + G H +V+RL
Sbjct: 77 TYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRL 136
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+ S V N LL +A C + A +FD S DV++W++LI GYA+ G +S+AR++F
Sbjct: 137 GFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLF 196
Query: 178 DKMPE-------------------------------KNAVSWSAMINGYVQVDLFKEALE 206
D+MP+ K+ VSW+A+I GYV +L +EALE
Sbjct: 197 DEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALE 256
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA-YVDRNGIELDIILGTAIIDMY 265
F+ M G P+ ++ L+ACA LG L+ G +HA ++ N +L +LG A++DMY
Sbjct: 257 LFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMY 316
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--- 322
AKCG I A VF + ++DV ++ S+ISGLA H + ++ LF M++ V P+E
Sbjct: 317 AKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFV 376
Query: 323 ---------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
M Y IEP ++H GC+VD+LGRAG+L+ A + M I
Sbjct: 377 GVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKI 436
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
EP+ V +LL AC+VHGDV+L K E L+ D G +VLLSN+YAS +W+G E V
Sbjct: 437 EPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENV 496
Query: 422 RRGMEDNEVRKVPGCSLIE 440
R+ M+DN V K G S +E
Sbjct: 497 RKLMDDNGVTKNRGSSFVE 515
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 251/449 (55%), Gaps = 26/449 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQ+ +HL + + + ++ C+ + S+ +F L WNT +R
Sbjct: 30 ELKQLHAHLLKTNSPLSSLPLSRVASVCAFN--SSFSYAKLIFQLLDASEVTHWNTCLRS 87
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
FAE + P A +L+ ++ D P++YT SF+L+AC+ + G I H V +LG +S
Sbjct: 88 FAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSN 147
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
F+ N ++HLYA C + ARK+FD RDVI+W +I K G A ++F +MPE
Sbjct: 148 MFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPE 207
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+N SW++MI GY Q KEA++ F M+ G PN +V L ACA +G L GR I
Sbjct: 208 RNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI 267
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H + +R+G E +I + +IDMY KCGC+E AC +FD+M R V +++++I+GLA H ++
Sbjct: 268 HDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRA 327
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A+ LF +M GV PN SM+ YGI P ++HYGC
Sbjct: 328 EDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGC 387
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDL RAG+L+ A + + MPI P+ V GALL C+VH +V L +E L + +
Sbjct: 388 MVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLN 447
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMED 427
+G +V+LSNIYA +W V +VR+ M D
Sbjct: 448 DGYYVVLSNIYAEAGRWEDVARVRKLMRD 476
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 262/452 (57%), Gaps = 29/452 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL----FV 106
R+ + + +IR + P A LY +LR+ LP +T +L++ A + + +
Sbjct: 35 RSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVL 94
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYAT-CNCMDPARKLFDMSVNRDVISWTSLINGYA 165
L H ++LG + + V N L+ ++A + L + D ++ +LI YA
Sbjct: 95 ALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYA 154
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++G+++ AR +FD+MP +NAVSWSAM+NGYVQ +EAL F MQ RP+ +VG
Sbjct: 155 RAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVG 214
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
L ACA GAL+QG+W+H Y+ +GI++++ GTA++DMY+KCG ++ A VF+ M ++
Sbjct: 215 VLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKN 274
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------E 321
V A+T++I GLA H + + A+ LF +M+ G+ P+ +
Sbjct: 275 VLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFD 334
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
SM YGI+P ++HYGC+VDLL R G L AK+++++MP+EPD + GAL+ CR H +V
Sbjct: 335 SMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNV 394
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
+ + + + D G +VLLSNIYA++ + ++R M + V K PGCS +EV
Sbjct: 395 EFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEV 454
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+GV+ +F+ G+ ++ +++I+ + ID ++
Sbjct: 455 NGVIHQFIVGDLSHPRIKDILSKWYEIDTRIR 486
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 41/168 (24%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G++ +F +QY+ W TMI+G A +A L+ QM S P++ F
Sbjct: 255 SKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFI 314
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L AC HA ++ D R+LFD V +
Sbjct: 315 GVLCAC-----------THAGLV------------------------DKGRELFDSMVRK 339
Query: 153 -----DVISWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMING 194
+ + +++ A++G + A++M KMP E +A+ W A++ G
Sbjct: 340 YGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 174/457 (38%), Positives = 258/457 (56%), Gaps = 25/457 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
++ G L + ++F + W TMI G+A + +A +++ ML S PN T
Sbjct: 303 AERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLI 362
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
++ AC+D L +G H +V + N LL +Y C+C+ AR+LFD +
Sbjct: 363 AVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATK 422
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV SWTS++NGYAK G + AR+ FD+ P KNAV WSAMI GY Q + KE+L+ F+ M
Sbjct: 423 DVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMM 482
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAY-VDRNGIELDIILGTAIIDMYAKCGCI 271
G P +V L+AC L L+ G WIH Y V I L + L AI+DMYAKCG I
Sbjct: 483 ERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSI 542
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
+ A VF +MP R++ ++ ++I+G A + ++ AI +F +M+ G PN
Sbjct: 543 DAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTAC 602
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
++M YGI+P HY C+VDLLGR G+LE A K++ MP++P
Sbjct: 603 SHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAA 662
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
GALLNACR+HG+V+L + + +L+ + G++VLL+N A+ +W+ V +VR M+D
Sbjct: 663 WGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKD 722
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLL 464
V+K+PG SLIE+DG EF+ + ++ EEI L
Sbjct: 723 KGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEIYKL 759
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 212/483 (43%), Gaps = 120/483 (24%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+Q+KQIQ+ +T++G + F V ++I FC+ + GDL + + +F ++ TF+WNTMI
Sbjct: 170 MRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMI 229
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+ +PI AF+ + M + ++ +F F L+AC +F G + V ++G++
Sbjct: 230 RGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFD 289
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V NGL+H YA + G + ARQ+FD+
Sbjct: 290 CELLVRNGLIHFYA-------------------------------ERGLLKNARQVFDES 318
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+K+ V+W+ MI+GY D +EA+E F M L PN ++ ++AC+ +G L+ G+
Sbjct: 319 SDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGK 378
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA--- 297
+H V+ + + L A++DMY KC C+ A +FD M +DV+++TS+++G A
Sbjct: 379 RVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCG 438
Query: 298 ----------------------------NHDQSASAIELFMRMQLEGVVPNE----SMSE 325
+++ +++LF M GVVP E S+
Sbjct: 439 DLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLS 498
Query: 326 IYG--------------------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP----- 360
G I V +VD+ + G ++AA +V MP
Sbjct: 499 ACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLI 558
Query: 361 -----------------------------IEPDNYVLGALLNACRVHGDVDLGKETVESL 391
EP+N +LL AC G + G+E +++
Sbjct: 559 SWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNM 618
Query: 392 VER 394
+
Sbjct: 619 ERK 621
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 273/475 (57%), Gaps = 30/475 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + H LF F++ I + +AF LY Q+L S PN +TFS IL
Sbjct: 76 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSIL 135
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
++C+ S G + H V++ G +V GL+ +YA + A+K+FD R ++
Sbjct: 136 KSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLV 191
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
S T++I YAK G + AR +FD+M E++ VSW+ MI+GY Q +AL F + G
Sbjct: 192 SSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADG 251
Query: 216 F-RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ +V AL+AC+ +GAL+ GRWIH +V+ + I L++ + TA+IDMY+KCG +E A
Sbjct: 252 KPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEA 311
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ-LEGVVPN------------- 320
VF+ P +D+ A+ ++I+G A H S A+ LF MQ + G+ P
Sbjct: 312 VLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAH 371
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
ESM + YGI+P ++HYGCLV LLGRAG L+ A ++++ M +E D+ +
Sbjct: 372 AGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWS 431
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
++L +C++HG+ LGKE E L+ +++ + G++VLLSNIYA + GV KVR M++
Sbjct: 432 SVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKG 491
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ K PG S IE+D V EF +G+R ++ +EI +L + + +KS + + N V
Sbjct: 492 IVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTV 546
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 171/520 (32%), Positives = 274/520 (52%), Gaps = 68/520 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+KQI + + +G +DPF+ ++I + S L + ++F + + + WNT+IR
Sbjct: 49 KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108
Query: 62 GFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+A + P ++ ++ +ML +S P+ +TF F+++A ++ LF G H VI++
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F+LN L+H YA C + ++F RDV+SW S+I + + G
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGG-----------C 217
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE EALE F M+ +PN +VG L+ACA + GR
Sbjct: 218 PE--------------------EALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI------- 293
W+H+Y++RN I + L A++DMY KCG +E A +FD MP +D+ ++T+++
Sbjct: 258 WVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317
Query: 294 -----SGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
GLA H AI LF +MQ + V PN M
Sbjct: 318 EYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME 377
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+YG+ PGV+HY C+VD+LGRAG+LE A +++ +MP+ P V GALL AC +H +V L
Sbjct: 378 LVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLA 437
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
++ L+E + G +VLLSNIYA +W+ V +R+ M D ++K PGCS IEVDG+
Sbjct: 438 EQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGI 497
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V EF+ G+ ++ ++I L I L+++ + + + +
Sbjct: 498 VHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHL 537
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/469 (35%), Positives = 269/469 (57%), Gaps = 30/469 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M +KQI +H ++ +GK++ F + S GDL + RLF + TF +NT+I
Sbjct: 29 MNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNTII 88
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLF---VGLIC---HAQV 114
RG+A+ + P L+ QM ++ P+ +TF+F+++A + + L C H V
Sbjct: 89 RGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAV 148
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+ G+ S+ FV N L++LYA A ++F+ +V DV+SW+ L+ + + G++ +AR
Sbjct: 149 FKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELAR 208
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
Q+FD MPEK+ VSW+AM++GY + + +EALE F M G RP+ IV ++AC LG
Sbjct: 209 QVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTNLG 268
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
++ G +H+Y++ NG + L A+I+MYAKCGC++ A VF++M + + + S+IS
Sbjct: 269 DVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMIS 328
Query: 295 GLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIE 330
ANH + A ELF M G+ P+ + M YGIE
Sbjct: 329 ACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIE 388
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
++HYGC+VD+LGRAG LE A +++ MPI ++ V GALL ACR++GDV++G+ V+
Sbjct: 389 ASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKK 448
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
L+E D G ++LL +IY ++ + +R+ M+++ K PG S +
Sbjct: 449 LLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYSWV 497
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 181/495 (36%), Positives = 269/495 (54%), Gaps = 55/495 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+ +QI + G +GK + F S +S+ +++F +Q F WNTMIRG
Sbjct: 55 KFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRG 114
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+AE P+ A LY+QM S P+ +T+ F+L+A A + G H+ IR G+ES
Sbjct: 115 YAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESL 174
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
FV N L+H+YA C + A KLF++ R++++W S+INGYA +G+ +
Sbjct: 175 VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPN----------- 223
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
EAL F M L G P+ +V L+ACA LGAL GR
Sbjct: 224 --------------------EALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRA 263
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H Y+ + G++ ++ G A++D+YAKCG I A VFD M + V ++TSLI GLA +
Sbjct: 264 HVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFG 323
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
A+ELF ++ +G++P+E M E YGI P ++HYGC
Sbjct: 324 KEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGC 383
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG+++ A + ++ MP++P+ V LL AC +HG + LG+ L++ H
Sbjct: 384 MVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKH 443
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G +VLLSN+YAS ++W+ V KVRR M V+K PG SL+E+ + EFV G+R++
Sbjct: 444 SGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQT 503
Query: 459 EEIVLLLFGIDKHLK 473
EEI + L I K LK
Sbjct: 504 EEIYVKLAEITKLLK 518
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 181/503 (35%), Positives = 276/503 (54%), Gaps = 60/503 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVG--KIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNT 58
M+ ++QI + L + G KIIGFC+ S GD+ + +LF +Q F WN+
Sbjct: 1 MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60
Query: 59 MIRGFAEKNEPIK-AFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIR 116
MIRG ++ P K L+++M+R + PN +T +F+L+AC+ S L G HA V++
Sbjct: 61 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ S FV T+L+N YAK I +A ++
Sbjct: 121 SGFGSSPFVE-------------------------------TALVNFYAKCEDIVLASKV 149
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD++ ++N V+WS MI+GY ++ L EAL F MQ G P+ +V ++ACA GAL
Sbjct: 150 FDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGAL 209
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D G+W+HAY+++ IE D+ L TA+++MYAKCGCIE A VFD+MP +D A++S+I GL
Sbjct: 210 DTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGL 269
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A + + A+E F RM+ V PN SM E +GI P
Sbjct: 270 AINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPS 328
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++ YGC+VDLL RA ++E A +V MPI P+ + LL C+ ++D + + L+
Sbjct: 329 MELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLL 388
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E + ++LLSN+YAS QW + +VR+ M+ ++ VPGCS IEVDG+V EFV G+
Sbjct: 389 ELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGD 448
Query: 453 RTNVLMEEIVLLLFGIDKHLKSL 475
++ E+ +L I K + ++
Sbjct: 449 WSHPEAMEVREILRDISKRVHAV 471
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 181/503 (35%), Positives = 276/503 (54%), Gaps = 60/503 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVG--KIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNT 58
M+ ++QI + L + G KIIGFC+ S GD+ + +LF +Q F WN+
Sbjct: 70 MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 129
Query: 59 MIRGFAEKNEPIK-AFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIR 116
MIRG ++ P K L+++M+R + PN +T +F+L+AC+ S L G HA V++
Sbjct: 130 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 189
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ S FV T+L+N YAK I +A ++
Sbjct: 190 SGFGSSPFVE-------------------------------TALVNFYAKCEDIVLASKV 218
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD++ ++N V+WS MI+GY ++ L EAL F MQ G P+ +V ++ACA GAL
Sbjct: 219 FDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGAL 278
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D G+W+HAY+++ IE D+ L TA+++MYAKCGCIE A VFD+MP +D A++S+I GL
Sbjct: 279 DTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGL 338
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A + + A+E F RM+ V PN SM E +GI P
Sbjct: 339 AINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPS 397
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++ YGC+VDLL RA ++E A +V MPI P+ + LL C+ ++D + + L+
Sbjct: 398 MELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLL 457
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E + ++LLSN+YAS QW + +VR+ M+ ++ VPGCS IEVDG+V EFV G+
Sbjct: 458 ELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGD 517
Query: 453 RTNVLMEEIVLLLFGIDKHLKSL 475
++ E+ +L I K + ++
Sbjct: 518 WSHPEAMEVREILRDISKRVHAV 540
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 178/498 (35%), Positives = 271/498 (54%), Gaps = 38/498 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+Q L G F K++ FC+ + + DL + +F L F++ MI
Sbjct: 56 LNHLKQLQGFLISHGHSQTQFFAFKLVRFCNLT-LADLCYARYIFDNLTSPNVFLYTAMI 114
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+A +P AF LY+ M+R + PNN+ + +LR+C D + H QV++ G+
Sbjct: 115 TAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSNATKMVHTQVLKSGF 174
Query: 120 ESYDFVLNGLLHLYATCNC-MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
Y V ++ Y+ + + AR++FD + R V+SWT++I+GYA+ G A ++F+
Sbjct: 175 GGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGYARLGNFDSAIELFE 234
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF---------RPNHAGIVGALTA 229
MPE++ +W+A+I G Q F EA+ F M L +PN + AL+A
Sbjct: 235 SMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSA 294
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
C G L G+WIH YV + D + A++DMY KCG ++ A VFD + +++ ++
Sbjct: 295 CGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSW 354
Query: 290 TSLISGLANHDQSASAIELFMRMQL--EGVVPNE------------------------SM 323
SLI+ LA H S SAI+LF + +GV PNE M
Sbjct: 355 NSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVLNACTHGGLVEKGYSYFEMM 414
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
Y IEP ++H+GCL+DLLGRAG E A +VVR M IEPD V G+LLNAC++HG DL
Sbjct: 415 RRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPDEVVWGSLLNACKIHGRSDL 474
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ +V+ L+E + G ++L+NIYA +W+ V KVRR +++ K PGCS IEVD
Sbjct: 475 AEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRRLLKEKNAYKTPGCSWIEVDN 534
Query: 444 VVCEFVSGERTNVLMEEI 461
V +F S + ++ +EEI
Sbjct: 535 QVYQFYSFDMSHPSVEEI 552
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 273/518 (52%), Gaps = 59/518 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K KQI + + +G DP GK++ C+ + L + RLF TF+ NT+I
Sbjct: 15 LKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLI 74
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R + P+ + + Q+ R L P+++TF+F L+A A++ L G+ H+Q R G+
Sbjct: 75 RSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGF 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFD-------------------------------- 147
+++ FV L+ +YA C AR++FD
Sbjct: 135 DAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGC 194
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
M V R++ SW ++ GYAK+G++ +AR++F +MP ++ VSWS MI G+ F EA
Sbjct: 195 MPV-RNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGF 253
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F + R N + G L+ACA GA + G+ +H +V++ G + A+ID Y+K
Sbjct: 254 FRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSK 313
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------ 320
CG + A VF +MP R + ++TS+I+GLA H AI+LF M+ GV P+
Sbjct: 314 CGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFIS 373
Query: 321 ------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
M +YGIEP ++HYGC+VDL GRA L+ A + + EMP+
Sbjct: 374 LLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVS 433
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
P+ + LL AC +HG++++ + L E D+ G HVLLSN+YA +W V +R
Sbjct: 434 PNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIR 493
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
R M ++ ++K PG S+IE+D V+ FV+GE+ N + EE
Sbjct: 494 RTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEE 531
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/405 (40%), Positives = 243/405 (60%), Gaps = 25/405 (6%)
Query: 105 FVGLICHAQVIRLGWESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
+G H+ ++R G + D V L+ LY TC + AR +F RDV++W +I G
Sbjct: 95 LLGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAG 154
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
Y K+G ++ AR++FD MPE+N VSW+ +I GY Q+ +EA+E F MQ+ G P+ +
Sbjct: 155 YVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVAL 214
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
+ L+AC LGA+D G W+H +V R G+ +I L +IIDMY KCGCIE A VF+ M
Sbjct: 215 LSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEE 274
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------------------- 322
+ V +T+LI+G A H A+E+F RM+ E + PN+
Sbjct: 275 KSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWY 334
Query: 323 ---MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
M Y I+P V+HYGC+VDLLGRAG L+ A+ +V++MP++ + + GALL A R HG
Sbjct: 335 FNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHG 394
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
D DLG+E + L+E + G ++LLSNI+A E+W+ V K+R+ M++ +R VPG S I
Sbjct: 395 DADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSI 454
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EVDG+V EF S + ++ + +I +L I+ ++KS+ F EV
Sbjct: 455 EVDGMVHEFTSRDGSHPFLHKICEVLCEINTNMKSVGFASVFPEV 499
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 35/258 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ A GDL+H LF + R W T+I G+A+ P +A ++++M
Sbjct: 152 IAGYVKA---GDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIE 208
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ +L AC D + +G H V+R G ++N ++ +Y C C++ A ++
Sbjct: 209 PDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEV 268
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F+ + V++WT+LI G+A G A +MF +M +N
Sbjct: 269 FEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMEREN--------------------- 307
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW-IHAYVDRNGIELDIILGTAIIDM 264
PN + L+AC+ +G D GRW + V + I+ + ++D+
Sbjct: 308 ----------MAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDL 357
Query: 265 YAKCGCIETACSVFDSMP 282
+ GC++ A + MP
Sbjct: 358 LGRAGCLKEAQDLVKDMP 375
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/463 (34%), Positives = 260/463 (56%), Gaps = 24/463 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ + ++F R WN +I G+ + E KA +YK M P++ T ++
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+C+ L G + V G ++N L+ +++ C + AR++FD R ++
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT++I+GYA+ G + ++R++FD M EK+ V W+AMI G VQ ++AL F MQ
Sbjct: 325 SWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN 384
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ ++ L+AC+ LGALD G WIH Y+++ + L++ LGT+++DMYAKCG I A
Sbjct: 385 TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEAL 444
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
SVF + R+ YT++I GLA H +++AI F M G+ P+E
Sbjct: 445 SVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGG 504
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M + + P ++HY +VDLLGRAG+LE A +++ MP+E D V GAL
Sbjct: 505 MIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGAL 564
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L CR+HG+V+LG++ + L+E G++VLL +Y W ++ RR M + V
Sbjct: 565 LFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVE 624
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
K+PGCS IEV+G+VCEF+ +++ E+I L + +H++S
Sbjct: 625 KIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRS 667
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 198/388 (51%), Gaps = 53/388 (13%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+KQIQ+ + ++G + DPFA ++I FC+ S+ L + ++ ++ F WN IRG
Sbjct: 68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRG 127
Query: 63 FAEKNEPIKAFALYKQMLRS---DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
F+E P ++F LYKQMLR + P+++T+ + + CAD +G + V++L
Sbjct: 128 FSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRL 187
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E V N +H++A+C M+ ARK+FD S RD++SW LINGY K G+
Sbjct: 188 ELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEA--------- 238
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
++A+ + M+ G +P+ ++G +++C+ LG L++G
Sbjct: 239 ----------------------EKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ + YV NG+ + I L A++DM++KCG I A +FD++ R + ++T++ISG A
Sbjct: 277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARC 336
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ +LF M+ + VV +M I VQ A + A + +EM
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAM-----IGGSVQ-----------AKRGQDALALFQEM 380
Query: 360 P---IEPDNYVLGALLNACRVHGDVDLG 384
+PD + L+AC G +D+G
Sbjct: 381 QTSNTKPDEITMIHCLSACSQLGALDVG 408
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 281/519 (54%), Gaps = 39/519 (7%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGY----RLFVCLQYRTTFIWN 57
+ +++I +HL VSG + P + + ++S D G RL + + T N
Sbjct: 107 RHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLLAHN 166
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI-------- 109
+++R A P AF ++ + +P+NY+F+F++RA + +
Sbjct: 167 SLLRALARGRRPHLAFGAFRDL---PLVPDNYSFTFLVRAATALAAAAASALDAALIAGS 223
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA +R G V +G + +YA + AR F + DV+ T+++ A G+
Sbjct: 224 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGE 283
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
AR++FD MP+++ V+W+AMI GYV +EAL F+ M+ G +V ALTA
Sbjct: 284 ADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTA 343
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGAL++G+W+H+ G+ L + LGTA+IDMY+KCG + A VFDSM R+V+ +
Sbjct: 344 CAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTW 403
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
TS +SGLA + + LF RM+ GV PN +SM
Sbjct: 404 TSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKS 463
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+GI+P ++HYGC+VDL GRAG L+ A + MP+EP V GALLNA R+H +V+LGK
Sbjct: 464 NHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGK 523
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
++ L+ ++ HVLLSNIYA ++ W GV VR M+ V+KVPGCS IEV G V
Sbjct: 524 YAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKV 583
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EF G +T+ +EI ++L +++ L+ + + EV
Sbjct: 584 HEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 622
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/479 (34%), Positives = 265/479 (55%), Gaps = 26/479 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DPF ++ +A G ++ +F + +R W+ MI G+ + A L+++
Sbjct: 156 DPFVQTGLVRMYAAC--GRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M + P+ S +L AC L G + H ++ + + L+ +YA+C
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
MD A LF+ +++++ T+++ GY+K GQI AR +F++M +K+ V WSAMI+GY +
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
D +EAL FN MQ G +P+ ++ +TACA LGALDQ +WIH +VD+NG + +
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN 393
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A+I+MYAKCG +E A +FD MP ++V ++T +IS A H + SA+ F +M+ E +
Sbjct: 394 NALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIE 453
Query: 319 PN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PN SM + I P HYGC+VDL GRA +L A +
Sbjct: 454 PNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALE 513
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+V MP+ P+ + G+L+ ACRVHG+++LG+ + L+E DH+G HV LSNIYA +
Sbjct: 514 LVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARR 573
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
W V +VR+ M+ + K GCS E++ + EF+ +R++ +EI L+ + LK
Sbjct: 574 WEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLK 632
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 188/456 (41%), Gaps = 89/456 (19%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ +KQ+ + + S V +I C+ S L + +F + T + N
Sbjct: 36 LTHLKQVHAQILRSKLDRSTSLLVKLVISSCALS--SSLDYALSVFNLIPKPETHLCNRF 93
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+R + EP K +Y++M + ++F +L+A + L GL H +LG+
Sbjct: 94 LRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGF 153
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+S FV GL+ +YA C + AR +FD +RDV++W+ +I+GY +SG
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG----------- 202
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
LF +AL F M+ P+ + L+AC G L G
Sbjct: 203 --------------------LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG 242
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGC----------------------------- 270
+ IH ++ N I +D L +A++ MYA CG
Sbjct: 243 KMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKL 302
Query: 271 --IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
IE A SVF+ M +D+ ++++ISG A D A+ LF MQ G+ P++
Sbjct: 303 GQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVI 362
Query: 322 -------SMSEIYGIEPGVQHYG---------CLVDLLGRAGMLEAAKKVVREMPIEPDN 365
++ + I V G L+++ + G LE A+++ +MP +
Sbjct: 363 TACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMP-RKNV 421
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
+++A +HGD + + +++ G+
Sbjct: 422 ISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGI 457
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 267/479 (55%), Gaps = 30/479 (6%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F V ++I CS D D + Y +F + +++ MI GF +LY +
Sbjct: 60 DAFVVFELIRVCSTLDSVD--YAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHR 117
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M+ + LP+NY + +L+AC C + HAQV++LG+ S V ++ +Y
Sbjct: 118 MIHNSVLPDNYVITSVLKACDLKVCREI----HAQVLKLGFGSSRSVGLKMMEIYGKSGE 173
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+ A+K+FD +RD ++ T +IN Y++ G I A ++F + K+ V W+AMI+G V+
Sbjct: 174 LVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+ALE F MQ+ N V L+AC+ LGAL+ GRW+H++V+ +EL +G
Sbjct: 234 KEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVG 293
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A+I+MY++CG I A VF M ++DV +Y ++ISGLA H S AI F M G
Sbjct: 294 NALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PN+ SM ++ +EP ++HYGC+VDLLGR G LE A +
Sbjct: 354 PNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYR 413
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ +PIEPD+ +LG LL+AC++HG+++LG++ + L E G +VLLSN+YAS+ +
Sbjct: 414 FIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGK 473
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
W ++R M D+ + K PGCS IEVD + EF+ G+ + E I L +++ L+
Sbjct: 474 WKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRILR 532
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 169/402 (42%), Gaps = 74/402 (18%)
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
L T +LR+C + + + HA++IR + FV+ L+ + +T + +D A
Sbjct: 26 LSRRKTLISVLRSCKNIAHVPS---IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYD 82
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+F N +V +T++I+G+ SG+ + ++ +M + + + +I ++ K
Sbjct: 83 VFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVC 142
Query: 205 LE-HFNYMQLCGFRPNHAGIVGALTACAFLGAL-DQGRWIHAYVDRNGIELDIILGTAII 262
E H ++L GF + + + + G L + + DR D + T +I
Sbjct: 143 REIHAQVLKL-GFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDR-----DHVAATVMI 196
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
+ Y++CG I+ A +F + +D +T++I GL + + A+ELF MQ+E V NE
Sbjct: 197 NCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEF 256
Query: 322 -------SMSEIYGIEPG--VQHY-------------GCLVDLLGRAGMLEAAKKVVREM 359
+ S++ +E G V + L+++ R G + A++V R M
Sbjct: 257 TAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVM 316
Query: 360 P----------------------------------IEPDNYVLGALLNACRVHGDVDLGK 385
P+ L ALLNAC G +D+G
Sbjct: 317 RDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGL 376
Query: 386 ETVESL-----VERSLDHEGVHV-LLSNIYASTEQWNGVEKV 421
E S+ VE ++H G V LL + E + +E +
Sbjct: 377 EVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENI 418
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 250/477 (52%), Gaps = 28/477 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++Q+ + L SG DP A + + FC+ D+S+ RL +F+WNT+I
Sbjct: 46 MAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGR-DVSYAERLVRHHPRPNSFMWNTVI 104
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R ++ P A AL+ ML S P T +L A A G H ++LG
Sbjct: 105 RALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKLGLA 164
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N + +YA+C D A LF D ++ S I A++G++ AR +FD M
Sbjct: 165 GDAYVRNATIAMYASCARADEALALFGQCPEFDAVACNSAIVALARAGRVDEARAVFDGM 224
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+ +WSAM++ Y + EAL F+ MQ G PN +V L CA LGALDQG
Sbjct: 225 PERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCASLGALDQGA 284
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD---SMPNRDVFAYTSLISGLA 297
W+HAY+DR+G+ ++ ++ TA++DMY KCG ++ A VFD S + + ++ S++ GLA
Sbjct: 285 WVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKLSSWNSMMQGLA 344
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H Q A+ LF ++ G+ P+ SM+ + +EPG+
Sbjct: 345 VHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYGHAGMPDEAQAAFASMATEHSVEPGI 404
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVD L RAG L A+ +R MP+ PD V GALL+ CR+HGD +LG V
Sbjct: 405 EHYGCLVDALARAGRLREAEDAIRSMPMAPDAAVWGALLSGCRLHGDAELGARAAREAVR 464
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
G +VL +++ A VR M + V KVPGCS+IEV+GVV EFVS
Sbjct: 465 CDPRDSGAYVLAASVLARGGNPGRGAGVRGRMREAGVGKVPGCSMIEVNGVVHEFVS 521
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 282/509 (55%), Gaps = 32/509 (6%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
++ SH+ G D F +I S G+L+ LF R +NTMI+G+AE
Sbjct: 132 EVHSHIIKHGFESDLFVRNALIHLYSV--FGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR--LGWESYD 123
N+P A L+ +M S LP+ +TF + C+ + VG HAQV + +S
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNI 249
Query: 124 FVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ + ++ +YA C ++ A ++F M ++ +W+S++ GYA+ G+I++AR++F+ M E
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHE 309
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RW 241
++ +SW+AMI+GY Q EALE F M+ G +P+ +V L+ACA LGA D G R
Sbjct: 310 RDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRL 369
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANH 299
H Y++ + IL A++DMYAKCG I++A +F + + F + S+I+GLA H
Sbjct: 370 YHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQH 429
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+AI +F + G+ P+E SM YGI+P ++H
Sbjct: 430 GLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEH 489
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGR G LE A +V++MP E ++ + ALL+ACR HG+V +G+ + L+E
Sbjct: 490 YGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEME 549
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H +VLLSNI A QW +VR+ MED+ +RK PG S IE+ G + FV+ ++++
Sbjct: 550 AQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSH 609
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EI L+L + LKS + + +V
Sbjct: 610 PQGKEIELMLKDMAMRLKSAGYVPNTAQV 638
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/400 (32%), Positives = 192/400 (48%), Gaps = 55/400 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMI 60
KQ QI + V+G F++ ++I F S D L H LF + F+WNTMI
Sbjct: 23 KQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMI 82
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG++ + P +A LY M+ P NN+TF F+L +CA S L G H+ +I+ G+
Sbjct: 83 RGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGF 142
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
ES FV N L+HLY+ ++ AR LFD S+ RD++S+ ++I GYA+ Q
Sbjct: 143 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ---------- 192
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
PE AL F MQ G P+ V + C+ L + G
Sbjct: 193 -PES--------------------ALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVG 231
Query: 240 RWIHAYVDRN--GIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLISGL 296
+ IHA V +N I+ +I+L +AI+DMYAKCG I A VF +M ++ A++S++ G
Sbjct: 232 KQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGY 291
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
A + A +LF M V+ +M Y +AG A ++
Sbjct: 292 ARCGEINVARKLFNHMHERDVISWTAMISGY----------------SQAGQCSEALELF 335
Query: 357 REMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+EM I+PD L A+L+AC G DLGK +E
Sbjct: 336 KEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIE 375
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 155/339 (45%), Gaps = 57/339 (16%)
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
FL N + +L +C GL HAQ I +NGL H
Sbjct: 5 FLLENPSSLCLLESCKSFK---QGLQIHAQTI----------VNGLHH------------ 39
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
++F +S +IS+ SL+ +K G + +R +F ++ N W+ MI GY + D +E
Sbjct: 40 QIFSIS---RLISFFSLLG--SKDG-LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPRE 93
Query: 204 ALEHFNYMQLCGFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
A+ + M G P N+ L +CA L +L+ G +H+++ ++G E D+ + A+I
Sbjct: 94 AIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALI 153
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
+Y+ G + A ++FD RD+ +Y ++I G A +Q SA+ LF MQ G++P+E
Sbjct: 154 HLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEF 213
Query: 322 SMSEIYGI-----EPGV------QHY-------------GCLVDLLGRAGMLEAAKKVVR 357
+ ++ + EP V Q Y +VD+ + G++ A++V
Sbjct: 214 TFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFS 273
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
M +++ G++++ ++ + ER +
Sbjct: 274 TMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDV 312
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/496 (34%), Positives = 272/496 (54%), Gaps = 55/496 (11%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+K IQ+H+ + D F K+I + + G +++ +R+F C + F+WNT+IRG+
Sbjct: 23 LKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGY 82
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+ + PI A ALY+ M PN+YTF F+L+AC L G H+Q++++G +
Sbjct: 83 SISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFET 142
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
++NGL+ LYA C CMD A +FD D SW+++++GYA++GQ A ++F +M +
Sbjct: 143 PLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAE 202
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
N V D F A +VG C LGALD G+W+H
Sbjct: 203 N-----------VSSDAF-----------------TLASVVG---VCGDLGALDLGKWVH 231
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+Y+D+ G+++D++LGTA++ MY+KCG ++ A VF M RDV A++++I+G A H
Sbjct: 232 SYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGE 291
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
A++LF M+ +PN E+M Y I P ++HYGC+
Sbjct: 292 KALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCM 351
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
VDL RAGM+ A K ++ MPIEP+ + LL AC+ HG DLG+ +++
Sbjct: 352 VDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSP 411
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
+VL+SN+YAS +W+ V +VR M+D +K G S IE++ +V +F+ G+ ++ E
Sbjct: 412 ENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPERE 471
Query: 460 EIVLLLFGIDKHLKSL 475
+I +L + + LK +
Sbjct: 472 KIYGMLHQMARKLKQV 487
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 178/493 (36%), Positives = 270/493 (54%), Gaps = 91/493 (18%)
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF--- 146
T+ F+++AC ++S + GL+ H V++ G+E +++N L+HLYA + A++LF
Sbjct: 2 TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61
Query: 147 ----------------------------DMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
D V RDVISW ++INGYA G+I A+++FD
Sbjct: 62 SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFD 121
Query: 179 KMPEKNAVSWSAMINGYVQ-------VDLF------------------------KEALEH 207
+MPE+N VSW++M++G+V+ LF EAL
Sbjct: 122 EMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 181
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F+ M+ G +P A +V L+ACA LGALD+G +H Y++ N IE++ I+GTA++DMYAK
Sbjct: 182 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 241
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
CG I A VF++M ++DV A+ ++I+G+A H A +LF M+ V PN
Sbjct: 242 CGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAM 301
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
+ MS YGIEP V+HY C++DLL RAG+LE A +++ MP+EP
Sbjct: 302 LSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEP 361
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
+ LGALL CR+HG+ +LG+ + L+ H G ++LLSNIYA+ ++W+ KVR
Sbjct: 362 NPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRN 421
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
M+ N + KVPG S+IE+ G+V FV+G+ ++ +I L I LKS +
Sbjct: 422 LMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYS---- 477
Query: 484 VATEGGSLLDCQK 496
A G LLD ++
Sbjct: 478 -ADTGNVLLDMEE 489
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 47/318 (14%)
Query: 10 HLTVSGTLWDPFAVGKIIGFCSASDI-------------GDLSHGYRLFVCLQYRTTFIW 56
HL +G D A ++ CS D+ G++ H +F + R W
Sbjct: 43 HLYANGK--DLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISW 100
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR--------------ACADTS 102
NT+I G+A + +A L+ +M + + N S ++ C D
Sbjct: 101 NTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVV 160
Query: 103 CLFVGLICHAQVIR-------------LGWESYDFVLNGLLHLYATCNCMDPARKLF--- 146
L C+AQ + +G + + + LL A +D L
Sbjct: 161 SWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI 220
Query: 147 -DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
D + + I T+L++ YAK G+IS+A Q+F+ M K+ ++W+ +I G KEA
Sbjct: 221 NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQ 280
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDM 264
+ F M+ PN V L+AC+ G +D+G + + GIE + +ID+
Sbjct: 281 QLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDL 340
Query: 265 YAKCGCIETACSVFDSMP 282
A+ G +E A + +MP
Sbjct: 341 LARAGLLEEAMELIGTMP 358
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 280/519 (53%), Gaps = 39/519 (7%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGY----RLFVCLQYRTTFIWN 57
+ +++I +HL VSG + P + + ++S D G RL + + T N
Sbjct: 100 RHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLLAHN 159
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI-------- 109
+++R A P AF ++ + P+NY+F+F++RA + +
Sbjct: 160 SLLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALIAGS 216
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA +R G V +G + +YA + AR F + DV+ T+++ A G+
Sbjct: 217 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGE 276
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
AR++FD MP+++ V+W+AMI GYV +EAL F+ M+ G +V ALTA
Sbjct: 277 ADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTA 336
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGAL++G+W+H+ G+ L + LGTA+IDMY+KCG + A VFDSM R+V+ +
Sbjct: 337 CAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTW 396
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
TS +SGLA + + LF RM+ GV PN +SM
Sbjct: 397 TSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKS 456
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+GI+P ++HYGC+VDL GRAG L+ A + MP+EP V GALLNA R+H +V+LGK
Sbjct: 457 NHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGK 516
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
++ L+ ++ HVLLSNIYA ++ W GV VR M+ V+KVPGCS IEV G V
Sbjct: 517 YAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKV 576
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EF G +T+ +EI ++L +++ L+ + + EV
Sbjct: 577 HEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 615
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 280/519 (53%), Gaps = 39/519 (7%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGY----RLFVCLQYRTTFIWN 57
+ +++I +HL VSG + P + + ++S D G RL + + T N
Sbjct: 107 RHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLLAHN 166
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI-------- 109
+++R A P AF ++ + P+NY+F+F++RA + +
Sbjct: 167 SLLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALIAGS 223
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA +R G V +G + +YA + AR F + DV+ T+++ A G+
Sbjct: 224 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGE 283
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
AR++FD MP+++ V+W+AMI GYV +EAL F+ M+ G +V ALTA
Sbjct: 284 ADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTA 343
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGAL++G+W+H+ G+ L + LGTA+IDMY+KCG + A VFDSM R+V+ +
Sbjct: 344 CAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTW 403
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
TS +SGLA + + LF RM+ GV PN +SM
Sbjct: 404 TSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKS 463
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+GI+P ++HYGC+VDL GRAG L+ A + MP+EP V GALLNA R+H +V+LGK
Sbjct: 464 NHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGK 523
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
++ L+ ++ HVLLSNIYA ++ W GV VR M+ V+KVPGCS IEV G V
Sbjct: 524 YAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKV 583
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EF G +T+ +EI ++L +++ L+ + + EV
Sbjct: 584 HEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEV 622
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 250/462 (54%), Gaps = 39/462 (8%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL ++F R WN+MI G+ + +A Y++M P+ T ++
Sbjct: 128 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 187
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+CA L +G H + G + + N L+ +Y C ++ ARKLFD N+ ++
Sbjct: 188 SSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMV 247
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT++ +FD+MP+K+ V W+AMI GYV + KEAL FN MQ
Sbjct: 248 SWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 292
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ +V L+AC+ LGALD G WIH Y++++ + L++ LGTA+IDMYAKCG I A
Sbjct: 293 INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAI 352
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF +P R+ +T++ISGLA H + AI F M V+P+E
Sbjct: 353 QVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGG 412
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
MS + + P ++HY C+VDLLGRAG+LE A+++++ MPIE D V GAL
Sbjct: 413 LVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 472
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
ACR+HG+V +G+ L++ G++VLL+N+Y E W K R+ M V
Sbjct: 473 FFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVE 532
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
K PGCS IEV+G+V EF+ ++++ E+I L + + L+
Sbjct: 533 KTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLE 574
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 205/410 (50%), Gaps = 72/410 (17%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ ++G + D FA ++I FC+ S+ DL + + + TF WN IRGF + P
Sbjct: 1 MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60
Query: 71 KAFALYKQMLRSD-FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL 129
+A LYK++L+ D P+NYT+ + +ACA S + +G V+ LG++S FV N +
Sbjct: 61 EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120
Query: 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS 189
+HL +C +D ARK MFDK ++ VSW+
Sbjct: 121 IHLLVSCGDLDGARK-------------------------------MFDKSCVRDLVSWN 149
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
+MINGYV+ EAL + M++ G +P+ ++G +++CA L LD GR H Y++ N
Sbjct: 150 SMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEEN 209
Query: 250 GIELDIILGTAIIDMYAKCGCIETACSVFDS----------------MPNRDVFAYTSLI 293
G++L + L A++DMY KCG +E+A +FDS MP++DV + ++I
Sbjct: 210 GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMI 269
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG--VQHY------- 336
G + ++ A+ LF MQ + P+E + S++ ++ G + HY
Sbjct: 270 GGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELS 329
Query: 337 ------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
L+D+ + G + A +V +E+P ++ A+++ +HG+
Sbjct: 330 LNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGN 378
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 269/475 (56%), Gaps = 30/475 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + H LF F++ I + +AF LY Q+L S+ PN +TFS +L
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
++C+ S G + H V++ G +V GL+ +YA + A+K+FD R ++
Sbjct: 138 KSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLV 193
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
S T++I YAK G + AR +FD M E++ VSW+ MI+GY Q +AL F + G
Sbjct: 194 SSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG 253
Query: 216 F-RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ +V AL+AC+ +GAL+ GRWIH +V + I L++ + T +IDMY+KCG +E A
Sbjct: 254 KPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ-LEGVVPN------------- 320
VF+ P +D+ A+ ++I+G A H S A+ LF MQ + G+ P
Sbjct: 314 VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAH 373
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
ESM + YGI+P ++HYGCLV LLGRAG L+ A + ++ M ++ D+ +
Sbjct: 374 AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWS 433
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
++L +C++HGD LGKE E L+ ++ + G++VLLSNIYAS + GV KVR M++
Sbjct: 434 SVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKG 493
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ K PG S IE++ V EF +G+R + +EI +L I + +KS + + N V
Sbjct: 494 IVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTV 548
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 171/492 (34%), Positives = 272/492 (55%), Gaps = 63/492 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSA--SDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q +HL VSG PF V +++ C+A DL H +F+ + F++NT+I
Sbjct: 26 HLHQAHAHLIVSGLASHPFTVTRLLA-CAALSPSASDLPHAKTIFLHTHNPSPFMFNTII 84
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + + Y ML + P+N+TF F++++ + + +G HA V++ G +
Sbjct: 85 MA---SSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLD 141
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DVISWTSLINGYAKSGQISIARQMFDK 179
FV+N ++ LY++ + ARK+FD S + DV+SWT+LI G++ SGQI AR++FD
Sbjct: 142 RDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDL 201
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYM----------QLCGFR------------ 217
MP KN VSW+AMI+GY EA + F+ M + G+
Sbjct: 202 MPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLF 261
Query: 218 ----------PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
PN A +V A++ACA L AL++GRW+H+Y+ + +++ LGT ++DMY K
Sbjct: 262 MEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGK 321
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
CG I A VF+ M R+V ++ S+I+GLA + A+ LF +MQ G PN
Sbjct: 322 CGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIAL 381
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
M+++YGI+P ++HYGC+VDLLGRAG+++ A V +MP++P
Sbjct: 382 LTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKP 441
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
+ + GAL+ ACR+HG V+LG+E + L++ H G + LL NI+A+ ++W+ V VR
Sbjct: 442 HSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVRD 501
Query: 424 GMEDNEVRKVPG 435
+ +V K PG
Sbjct: 502 LEKGRKVLKNPG 513
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 166/467 (35%), Positives = 264/467 (56%), Gaps = 28/467 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K I + + + KI F + S G L + RLF + TF +NT+I
Sbjct: 254 MQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 313
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL----RACADTSCLFVGLICHAQVIR 116
RG+++ + P ++ L+ QM R+ P+ +TF+F+L R D + H V++
Sbjct: 314 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLK 373
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG+ + FV+N L+HLYA A ++F+ V DV+SW+ L+ + ++G++ +ARQ+
Sbjct: 374 LGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQV 433
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD+MPE++ VSW+ M++GY Q +EALE F M+ G RP+ +V ++AC LG L
Sbjct: 434 FDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDL 493
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ G +H Y+D NG + L A+IDMYAKCGC++ A VF++M + + + S+IS
Sbjct: 494 ETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISAC 553
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
ANH + A +F M G+ P+ ESM YG+E G
Sbjct: 554 ANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAG 613
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
V+HYGC+VD+LGRAG LE A K++ M + ++ V GALL ACR++GDV++G+ ++ L+
Sbjct: 614 VEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI 673
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
E D G ++LL +IY + + ++RR M+ N +K GCS +
Sbjct: 674 ELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 720
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/487 (21%), Positives = 198/487 (40%), Gaps = 87/487 (17%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K I + + + KI F + S G L + RLF + TF +NT+I
Sbjct: 100 MQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 159
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+++ + P ++ L+ QM R+ P+ +TF+F+L+ + + + LI + I
Sbjct: 160 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMR-IDLPLIVASDEIHGAGV 218
Query: 121 SYD-------FVLNGLLHLYATCNCMDP---------ARKLFDMSVNRDVISWTSLI--- 161
YD ++ N ++H+ T + A KL R + +L+
Sbjct: 219 DYDKYKTLKSYISNKVMHMLPTSQSLASMAEACLAMQALKLIHARAFRANLHNHALVLAK 278
Query: 162 ----NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+ +G + A ++F ++ + N ++ +I GY + ++++ FN M+
Sbjct: 279 IFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVD 338
Query: 218 PNH--------------------------AGIVGALTACAFLGALDQGRWIHAYVDR--- 248
P+ G V L C L ++ IH Y R
Sbjct: 339 PDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNA--LIHLYAARGVP 396
Query: 249 --------NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+ D++ + ++ + + G +E A VFD MP RDV ++T ++SG A
Sbjct: 397 AAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAK 456
Query: 301 QSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG--VQHY-------------G 337
+S A+ELF M+ GV P+E + + + +E G V Y
Sbjct: 457 RSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCN 516
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
L+D+ + G ++ A +V M ++++AC HG+ + ++ +
Sbjct: 517 ALIDMYAKCGCMDLAWQVFNNME-RKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIR 575
Query: 398 HEGVHVL 404
+GV L
Sbjct: 576 PDGVTFL 582
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 176/510 (34%), Positives = 271/510 (53%), Gaps = 83/510 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++KQ S + G D A+G++I FC+ S G L R N +
Sbjct: 33 MAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGYL------------RWQLARNCIF 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+Y +ML PN +T+ ++RAC + G HA V++ G+
Sbjct: 81 --------------MYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ F LN L+H+Y ++ A R++FD M
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQA-------------------------------RRVFDNM 155
Query: 181 PEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
P++ N+VSW+AMI YVQ + EA F+ M+L + L+AC LGAL+Q
Sbjct: 156 PQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 215
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+WIH Y++++GIELD L T +IDMY KCGC+E A VF+ +P + + ++ +I GLA
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + +AIELF M+ E V P+ + M+E+ G++PG++
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
H+GC+VDLLGRAG+LE A+K++ EMP+ PD VLGAL+ ACR+HG+ +LG++ + ++E
Sbjct: 336 HFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL 395
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +VLL+N+YAS +W V KVR+ M D V+K PG S+IE + V EF++G R
Sbjct: 396 EPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRA 455
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ +EI L I + ++S+ + D + V
Sbjct: 456 HPQAKEIYAKLDEILETIRSIGYVPDTDGV 485
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 188/518 (36%), Positives = 273/518 (52%), Gaps = 67/518 (12%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVG-KIIGFCSASDIGDLSHGYRLFV-CLQYRTTFIWN 57
M+Q+ +IQ+ + S DP + K IG S+ G+L H +F L + F +N
Sbjct: 37 MRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSH--GNLRHSVLIFNHFLSFPNIFAYN 94
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPN--NYTFSFILRACADTSCLFVGLICHAQVI 115
+++ F++ N + + L PN YTF+ +L+ACA + + G H V
Sbjct: 95 ALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVT 154
Query: 116 RLGWESYDFVLNGLLHLY--ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+ G ES FV N L+ LY CNC+ A+KLFD V RDV+SW +LI+GY SG + A
Sbjct: 155 KYGCESNLFVRNSLVDLYFKVGCNCI--AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQV-------------------------------DLFK 202
R +FD M EKN VSWS MI+GY +V + +
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYA 272
Query: 203 EALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
+A+E F MQ G PN +V L+ACA LGALD G+WIH ++ RN IE+ + LG A+
Sbjct: 273 DAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNAL 332
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
DMYAKCGC+ A VF M RDV +++ +I GLA + + A F M +G+ PN
Sbjct: 333 ADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPND 392
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
+ M ++YGI P ++HYGC+VDLL RAG L+ A+ ++
Sbjct: 393 ISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLIN 452
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP++P+ V GALL CR++ D + G+ V ++E +H G V L+N+YAS + +
Sbjct: 453 SMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDD 512
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
R M DN+ K PGCS IE++ V EF G+ ++
Sbjct: 513 AASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSH 550
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 168/499 (33%), Positives = 284/499 (56%), Gaps = 48/499 (9%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+ + + +G + + + ++ ++S ++ + +F + T F++NT+I
Sbjct: 18 LNTLKQVHAQMLTTGLSFQTYYLSHLLN--TSSKFAS-TYAFTIFNHIPNPTLFLYNTLI 74
Query: 61 RGFAEKNEPIK-AFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
++ I AF+LY +L L PN++TF + +ACA L G HA V++
Sbjct: 75 SSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFL 134
Query: 119 WESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
YD FV N LL+ YA + +R LFD D+ +W +++ YA+S
Sbjct: 135 QPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSA--------- 185
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
+ VS+S + D+ EAL F MQL +PN +V ++AC+ LGAL
Sbjct: 186 ------SHVSYST---SFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALS 236
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
QG W H YV RN ++L+ +GTA++DMY+KCGC+ AC +FD + +RD F Y ++I G A
Sbjct: 237 QGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFA 296
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H A+EL+ M+LE +VP+ ESM ++G+EP +
Sbjct: 297 VHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKL 356
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCL+DLLGRAG L+ A++ +++MP++P+ + +LL A ++HG++++G+ ++ L+E
Sbjct: 357 EHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIE 416
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ G +VLLSN+YAS +WN V++VR M+D+ V K+PG SL+E++G + EF++G++
Sbjct: 417 LEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDK 476
Query: 454 TNVLMEEIVLLLFGIDKHL 472
+ +EI + I++ L
Sbjct: 477 AHPFSKEIYSKIGEINRRL 495
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 174/503 (34%), Positives = 282/503 (56%), Gaps = 31/503 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K +KQ + ++G D V K I CS + G L + Y +F + T++ NTMI
Sbjct: 28 LKTLKQSHCFMIITGLNRDNLNVAKFIEACS--NAGHLRYAYSVFTHQPFPNTYLHNTMI 85
Query: 61 RGFA---EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
R + E+N A +Y++ P+ +TF F+L+ S ++ G H Q +
Sbjct: 86 RALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVF 145
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G++S V+ GL+ +Y++C + ARK+FD RDV W +L+ GY K G++ AR +
Sbjct: 146 GFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLL 205
Query: 178 DKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+ MP +NAVSW+ +I+GY + EA+E F M + P+ ++ L+ACA LG+
Sbjct: 206 EMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGS 265
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ G I +YVD G+ + L A+IDMYAK G I A VF+S+ R+V +T++I+G
Sbjct: 266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITG 325
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEP 331
LA H A A+ +F RM GV PN+ SM YGI P
Sbjct: 326 LATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINP 385
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++HYGC++DLLGRAG L A++V++ MP E + + G+LL A VH D+D+G+ + L
Sbjct: 386 NIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQL 445
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ ++ G ++LL+N+Y++ +W+ +R+ M+ V+K+ G S IEV+ V +F+SG
Sbjct: 446 IKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSIEVENRVYKFISG 505
Query: 452 ERTNVLMEEIVLLLFGIDKHLKS 474
+ ++ +E+I LL +D ++S
Sbjct: 506 DLSHPQVEKIHELLQEMDLQIQS 528
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/513 (34%), Positives = 277/513 (53%), Gaps = 60/513 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTMIR 61
+++QI + + + L F V ++I FCS S + G L + +F +Q+ +FI+ +I+
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIK 80
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF--ILRACADTSCLFVGLICHAQVIRLGW 119
GF++ + P+++ LY +ML + FS +L+AC G H QV++
Sbjct: 81 GFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
FV N ++ +Y ++ AR++FD NRDV+SW S+I GY K+G+I +A ++FD+
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDE 200
Query: 180 MPE-------------------------------KNAVSWSAMINGYVQVDLFKEALEHF 208
MPE K+ V+W++MI+ YVQ +AL+ F
Sbjct: 201 MPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLF 260
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI-ILGTAIIDMYAK 267
M G RP+ IV L+A A LG +++G+W+HAYV N IEL +G+A+IDMY+K
Sbjct: 261 REMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSK 320
Query: 268 CGCIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
CG IE A VF S+ +R ++ + S+ISGLA H + A+++F+ M+ + PNE
Sbjct: 321 CGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLG 380
Query: 322 -------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
SM E Y I P +QHYGC++DL GRAG LE A V++ MP E
Sbjct: 381 LLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFE 440
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
D A+L+A HG +++GK +E + D +VLLSNIYA +W+ V K+R
Sbjct: 441 ADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIR 500
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
M V+K+ GCS + VBG V EF+ G+ +
Sbjct: 501 LMMRQRGVKKIAGCSSMLVBGKVHEFLXGKELD 533
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 177/504 (35%), Positives = 272/504 (53%), Gaps = 28/504 (5%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
+ H+ G D F V + F S S G + RLF R WNT+I G+
Sbjct: 143 VLGHVQKLGFSADVFVVNAGVHFWSVS--GSMVLARRLFDESPARDVVSWNTLIGGYVRS 200
Query: 67 NEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
P +A L+ +++ P+ T + CA L +G H V G
Sbjct: 201 GLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVR 260
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
++N ++ +Y C ++ A+ +F+ N+ V+SWT++I G+A+ G + AR +FD+MPE++
Sbjct: 261 LMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERD 320
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
W+A++ GYVQ KEA+ F+ MQ PN +V L+AC+ LGAL+ G W+H
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHH 380
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+DR+ + L + LGT+++DMYAKCG I+ A +F +P+++ +T++I GLANH +
Sbjct: 381 YIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADE 440
Query: 305 AIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCLV 340
AIE F RM G+ P+E M E Y +E ++HY C++
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMI 500
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ A+++V MP++PD V GAL ACR+HG++ LG++ LVE G
Sbjct: 501 DLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSG 560
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
++VLL+N+YA +KVR M V KVPGCS IE++GVV EF+ +++++
Sbjct: 561 IYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIA 620
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEV 484
I L GI +K D +E
Sbjct: 621 IYDCLHGITLQMKHTANLIDISET 644
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 169/384 (44%), Gaps = 85/384 (22%)
Query: 73 FALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
LY+ +L S P++ TF F+L+ACA G V +LG+ + FV+N +H
Sbjct: 105 LPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVH 164
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
++ M AR+LFD S RDV+SW +LI GY +SG A ++F W +
Sbjct: 165 FWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELF----------WRLV 214
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
+G RP+ ++GA++ CA +G L+ G+ +H +VD G+
Sbjct: 215 EDGK-------------------AVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGV 255
Query: 252 ELDIILGTAIIDMYAKCGCIETACSV-------------------------------FDS 280
+ L A++DMY KCG +E A SV FD
Sbjct: 256 RCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDE 315
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG 332
MP RDVF + +L++G + Q AI LF MQ V PNE + S++ +E G
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMG 375
Query: 333 --VQHY-------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
V HY LVD+ + G ++ A + +E+P + + A++
Sbjct: 376 MWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAMICGLAN 434
Query: 378 HGDVDLGKETVESLVERSLDHEGV 401
HG D E + +++ L + +
Sbjct: 435 HGHADEAIEYFQRMIDLGLQPDEI 458
>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/491 (35%), Positives = 278/491 (56%), Gaps = 38/491 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M QIKQ +HL +G + P K++ AS G LS+ ++LF + FI+NTMI
Sbjct: 1 MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 60
Query: 61 RGFAE-KNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+ A + ++ M+R S FLPN YTF F+ +AC + + G I++G
Sbjct: 61 KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIG 120
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
ES FV N ++ +YA +D AR++FD S+++D+ SW +I GY SG+I A++MFD
Sbjct: 121 LESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFD 180
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M E++ VSW+ +I GYVQV FKEAL+ F+ M L ALDQ
Sbjct: 181 EMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM---------------LQTV----ALDQ 221
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF--DSMPNRDVFAYTSLISGL 296
GRWIH Y+D++ I+++ L +++DMYAKCG I+ A VF + V+ + ++I G
Sbjct: 222 GRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGY 281
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE---AAK 353
A H +S AI+LF +M++E V PN+ + L++ ++E A+
Sbjct: 282 AMHGKSKEAIDLFEQMKVEKVSPNKVT------------FVALLNACSHGKLVEEGREAE 329
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+ V MP+ PD + GALL ACR+H D++ G+ + + E DH G HVLL+N+Y+++
Sbjct: 330 ETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASG 389
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
QW+ + VR+ +E + +K PGCS IE++GV +F+ G+R++ +++ L L + LK
Sbjct: 390 QWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLK 449
Query: 474 SLCFFDDGNEV 484
+ + + EV
Sbjct: 450 NAGYVPEFGEV 460
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 188/560 (33%), Positives = 287/560 (51%), Gaps = 100/560 (17%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTT----FI 55
++ +QI + L SG ++D F K++ F + + GD + Y L+ T F
Sbjct: 18 LRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDY-----LEQGNTRLGSFP 72
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+N++I G+ P A ++Y++M+R F+P+ +TF +L+AC++ S G H V+
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+LG + +V N L+ Y C A K+FD + RDV+SW SLI+G+ K+G A
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192
Query: 176 MFDKMP-----------------------------------EKNAVSWSAMINGYVQVDL 200
+F +M + N V +AM++ YV+
Sbjct: 193 VFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYVKNGC 252
Query: 201 F-------------------------------KEALEHFNYMQLCGFRPNHAGIVGALTA 229
F K++LE F+ M+ G P+ + L+A
Sbjct: 253 FYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSA 312
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LG LD G W+H Y+++ GI+ DI +GTAI+DMYAKCGCIE A +F SM R+ F +
Sbjct: 313 CASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTW 372
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSE 325
+L+ GLA H A+ LF M + GV PNE +MS+
Sbjct: 373 NALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSK 432
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+Y + P ++HYGC++DL RAG+LE A ++ R MP++PD + G LLNAC G+++L
Sbjct: 433 LYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSH 492
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ ++E D GV VLLSNI A ++W+ V ++RR M+D VRK PG S+IEVDG
Sbjct: 493 RIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDGKA 552
Query: 446 CEFVSGERTNVLMEEIVLLL 465
EFV G+ +++ EEI +L
Sbjct: 553 HEFVVGDISHLQTEEIYKVL 572
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/487 (35%), Positives = 266/487 (54%), Gaps = 27/487 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F + +I F +S DL+H R+F + + WN MI FA P KA L+++
Sbjct: 207 DLFILNSLINFYGSSGAPDLAH--RVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQE 264
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M D PN T +L ACA L G + + G+ + + N +L +Y C C
Sbjct: 265 MEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGC 324
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
++ A+ LF+ +D++SWT++++G+AK G A +FD MP K +W+A+I+ Y Q
Sbjct: 325 INDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQN 384
Query: 199 DLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
+ AL F+ MQL +P+ ++ AL A A LGA+D G WIH Y+ ++ I L+ L
Sbjct: 385 GKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHL 444
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
T+++DMYAKCG + A VF ++ +DV+ ++++I LA + Q +A++LF M +
Sbjct: 445 ATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYI 504
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
PN E M +YGI P +QHY C+VD+ GRAG+LE A
Sbjct: 505 KPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAA 564
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+ +MPI P V GALL AC HG+V+L + ++L+E + G VLLSNIYA
Sbjct: 565 SFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAG 624
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
W V +R+ M D++V+K P CS I+V+G+V EF+ G+ ++ ++I L I + K
Sbjct: 625 DWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFK 684
Query: 474 SLCFFDD 480
+ + D
Sbjct: 685 PIGYKPD 691
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 35/304 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+KQI +H+ + DP+ K++ + S L + +F + + WNT+IRG
Sbjct: 87 QLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRG 146
Query: 63 FAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+A ++P ++F ++ ML S PN +TF F+ +A + L +G + H VI+ S
Sbjct: 147 YASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSS 206
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
F+LN SLIN Y SG +A ++F MP
Sbjct: 207 DLFILN-------------------------------SLINFYGSSGAPDLAHRVFTNMP 235
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
K+ VSW+AMIN + L +AL F M++ +PN +V L+ACA L+ GRW
Sbjct: 236 GKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRW 295
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG---LAN 298
I +Y++ NG +IL A++DMY KCGCI A +F+ M +D+ ++T+++ G L N
Sbjct: 296 ICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGN 355
Query: 299 HDQS 302
+D++
Sbjct: 356 YDEA 359
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 153 DVISWTSLINGYAKSGQISI--ARQMFDKMPEKNAVSWSAMINGYVQV-DLFKEALEHFN 209
D + + L+ YA S + A+ +F+++P+ N W+ +I GY D + L +
Sbjct: 103 DPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLH 162
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
+ C PN A + L L G +H V + + D+ + ++I+ Y G
Sbjct: 163 MLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSG 222
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+ A VF +MP +DV ++ ++I+ A A+ LF M+++ V PN
Sbjct: 223 APDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPN 273
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 184/492 (37%), Positives = 266/492 (54%), Gaps = 61/492 (12%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ V+G + + VG++I S S G L + ++LF + I N ++RG A+ +P
Sbjct: 1 MVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPE 60
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130
K +LY +M + P+ YTF+F+L+AC+ G H +V+R G+ ++V N L+
Sbjct: 61 KTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALI 120
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--------- 181
+A C + A +LFD S ++W+S+ +GYAK G+I A ++FD+MP
Sbjct: 121 LFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNV 180
Query: 182 ----------------------EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
EK+ V+W+AMI+GYV KEAL F M+ G P+
Sbjct: 181 MITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPD 240
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGT----AIIDMYAKCGCIETA 274
I+ L+ACA LG L+ G+ +H Y+ + + I +GT A+IDMYAKCG I+ A
Sbjct: 241 VVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 300
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------------ 322
VF + +RD+ + +LI GLA H S IE+F MQ V PNE
Sbjct: 301 IEVFRGVKDRDLSTWNTLIVGLALHHAEGS-IEMFEEMQRLKVWPNEVTFIGVILACSHS 359
Query: 323 ------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M ++Y IEP ++HYGC+VD+LGRAG LE A V M IEP+ V
Sbjct: 360 GRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRT 419
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL AC+++G+V+LGK E L+ D G +VLLSNIYAST QW+GV+KVR+ +D V
Sbjct: 420 LLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRV 479
Query: 431 RKVPGCSLIEVD 442
+K G SLIE D
Sbjct: 480 KKPTGVSLIEED 491
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 252/453 (55%), Gaps = 28/453 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN MI G+A + ++AF ++++M+ S + +TF+ ++ CA+ C +G HA +
Sbjct: 257 WNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFL 316
Query: 116 R-LGWESYDFVL---NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
+ + + D + N L+ Y C +D A+++F+ RD++SW +++GY +
Sbjct: 317 KTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMD 376
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
A+ F++MPEKN +SW MI+G Q+ +EAL+ FN M+L GF P GA+ +C+
Sbjct: 377 EAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCS 436
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LG+L GR +HA V R G E + G A+I MYA+CG ++ A +F +MP D ++ +
Sbjct: 437 VLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNA 496
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I+ L H Q AIELF M EG++P+ +SM +Y
Sbjct: 497 MIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVY 556
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
G+ P +HY ++DLL RAG AK+V+ MP EP + ALL CR+HG++DLG E
Sbjct: 557 GVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEA 616
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E L E H+G +VLLSN+YA QWN + KVR+ M D V+K PGCS IEV+ V
Sbjct: 617 AERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHS 676
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
F+ G+ + + +I L + ++ + + D
Sbjct: 677 FLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPD 709
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 179/405 (44%), Gaps = 47/405 (11%)
Query: 9 SHLTVSGTLWD----PFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRG 62
S L + L+D P V + + S GDL ++F L R + +N MI
Sbjct: 62 SKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITA 121
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA-----DTSCLFVGLICHAQVIRL 117
++ ++ A L+ M R +F P+NYTF+ +L A A + C + H V++
Sbjct: 122 YSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQL----HCAVVKS 177
Query: 118 GWESYDFVLNGLLHLYATCN---------CMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
G VLN L+ Y C M ARKLFD NRD +SWT++I GY K+
Sbjct: 178 GTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNN 237
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ A++ + +K V+W+AMI+GY L+ EA E F M + + + ++
Sbjct: 238 DLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVIS 297
Query: 229 ACAFLGALDQGRWIHAY----VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
CA G G+ +HAY V ++ + + A+I Y KCG ++ A +F+ MP R
Sbjct: 298 VCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPER 357
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG 344
D+ ++ ++SG N A F M E + + ++ L
Sbjct: 358 DLVSWNIILSGYVNVRCMDEAKSFFNEMP----------------EKNILSWIIMISGLA 401
Query: 345 RAGMLEAAKKVVREMPI---EPDNYVLGALLNACRVHGDVDLGKE 386
+ G E A K M + EP +Y + +C V G + G++
Sbjct: 402 QIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ 446
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 27/289 (9%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HA +I G++ +LN L+ +Y+ + ++ AR LFD D+++ T+LI Y+ +G +
Sbjct: 36 HAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDL 95
Query: 171 SIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
++R++F P +++V ++AMI Y A+E F MQ FRP++ L
Sbjct: 96 KLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLG 155
Query: 229 ACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKC---------GCIETACSVF 278
A A + ++ + +H V ++G + A+I Y KC + A +F
Sbjct: 156 ALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLF 215
Query: 279 DSMPNRDVFAYTSLISG-LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYG 337
D MPNRD ++T++I+G + N+D A+ L + GV N +S G H G
Sbjct: 216 DEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMIS-------GYAHRG 268
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
++ E +K++ I+ D + ++++ C G LGKE
Sbjct: 269 LYLE------AFEMFRKMIMS-KIQLDEFTFTSVISVCANAGCFRLGKE 310
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 41/226 (18%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K +Q+ + + G A +I + + D +H LF+ + WN MI
Sbjct: 441 LKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHC--LFINMPCVDAISWNAMI 498
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + +A L+++ML+ LP+ +F ++ AC+ HA +++ G +
Sbjct: 499 AALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACS-----------HAGLVKEGRK 547
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+D + N +Y VN D + +I+ ++G+ S A+++ + M
Sbjct: 548 YFDSMHN----VYG---------------VNPDEEHYARIIDLLCRAGKFSEAKEVMESM 588
Query: 181 P-EKNAVSWSAMING---YVQVDLFKEALEHFNYMQLCGFRPNHAG 222
P E A W A++ G + +DL EA E +L +P H G
Sbjct: 589 PFEPGAPIWEALLAGCRIHGNIDLGIEAAE-----RLFELKPQHDG 629
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/495 (34%), Positives = 263/495 (53%), Gaps = 29/495 (5%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
++++QI + VSG L P G+++ S + + + +F + F +N MIR
Sbjct: 39 QEVRQIHAQFIVSGLLARPPNAGRLLD--SYVSMSQIYYALLVFNRIPSPDVFAYNAMIR 96
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G N P + LY ++L P+NYT++F+L+ C+ +F G H QVI+ G
Sbjct: 97 GLTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAP 156
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ L+H+YA +C+ A + +V++ S+I+GY G + AR MFDKM
Sbjct: 157 DTHIHTSLIHMYAKSDCLACAEGVLAECSQENVLAINSMISGYMSQGHVEKARAMFDKMG 216
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQL---CGFRPNHAGIVGALTACAFLGALDQ 238
K+A +WS MI GY + + +EAL F M + G +PN + +V +L+A A LGALDQ
Sbjct: 217 AKDAATWSGMITGYTKNGMHEEALVMFREMMMVSNSGVQPNESALVSSLSATACLGALDQ 276
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GRWIHAY+ R G ++ I LGT ++DMYAKCG I + +F M RDV + ++SG A
Sbjct: 277 GRWIHAYIRRIGAKISITLGTGLVDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAM 336
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H Q+ +LF M G PNE M +GI P V+
Sbjct: 337 HGQARKCFQLFDEMVAGGTRPNEVIFVAILSACSHAGYLELGHHYFNQMVTDFGIRPSVE 396
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGRAG L A++++ MP EP + GALL+ACR+H D+ G+ L++
Sbjct: 397 HYGCMVDLLGRAGQLAEAEELIISMPEEPTAVIWGALLSACRIHKDLRRGRRAFRQLMQL 456
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ L +++S + + V R +++NE+ G S IE++GVV EFV G+
Sbjct: 457 EPLRGDRYKLAGQMFSSAGEKEEADNVTRFIKENELETTRGSSFIEINGVVHEFVVGDAD 516
Query: 455 NVLMEEIVLLLFGID 469
+ E+ + GI+
Sbjct: 517 HHKAREMYRMWEGIN 531
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 252/477 (52%), Gaps = 28/477 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++Q+ + L SG DP A + + FC+ D+ + RL +F+WNT+I
Sbjct: 47 MAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGR-DVLYAERLVRHHPRPNSFMWNTVI 105
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R ++ P A AL+ ML S P+ +F +L A A G H ++LG
Sbjct: 106 RALSDGARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALKLGLA 165
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N + +YA+C D A LF DV++ S+I A++G++ AR +FD M
Sbjct: 166 GDAYVRNATIAMYASCGRADEALALFGQCPELDVVACNSVIVALARAGRVDEARSVFDAM 225
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+ +WSAM++ Y + EAL F+ MQ G PN +V L CA LGAL QG
Sbjct: 226 PERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCASLGALVQGA 285
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLA 297
W+H Y+DR+G+ ++ ++ TA++DMY KCG ++ A VFD+ ++ + ++ S++ GLA
Sbjct: 286 WVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQGLA 345
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H Q A+ LF ++ G+ P+ SMS +G+EPG+
Sbjct: 346 VHGQWREAVALFSELKSYGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMSSEHGVEPGI 405
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVD L RAG L A+ +R MP+ PD + GALL+ CR+HGD +LG V
Sbjct: 406 EHYGCLVDALARAGRLREAEDAIRAMPMAPDAAIWGALLSGCRLHGDAELGARAAREAVR 465
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
G +VL +++ A +R M + V KVPG S+IEV+GVV EFVS
Sbjct: 466 CDPRDSGAYVLAASVLARGGDPGRGAGIRGRMREAGVGKVPGSSMIEVNGVVHEFVS 522
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/467 (35%), Positives = 264/467 (56%), Gaps = 28/467 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K I + + + KI F + S G L + RLF + TF +NT+I
Sbjct: 8 MQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 67
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA----DTSCLFVGLICHAQVIR 116
RG+++ + P ++ L+ QM R+ P+ +TF+F+L+ + D + H V++
Sbjct: 68 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLK 127
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG+ + FV+N L+HLYA A ++F+ V DV+SW+ L+ + ++G++ +ARQ+
Sbjct: 128 LGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQV 187
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F +MPE++ VSW+ M++GY Q +EALE F M+ G RP+ +V ++AC LG L
Sbjct: 188 FYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDL 247
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ G +H Y+D NG + L A+IDMYAKCGC++ A VF++M + + + S+IS
Sbjct: 248 ETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISAC 307
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
ANH + A +F M G+ P+ ESM YG+E G
Sbjct: 308 ANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAG 367
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
V+HYGC+VD+LGRAG LE A K++ M + ++ V GALL ACR++GDV++G+ ++ L+
Sbjct: 368 VEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI 427
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
E D G ++LL +IY + + ++RR M+ N +K GCS +
Sbjct: 428 ELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 474
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/467 (35%), Positives = 264/467 (56%), Gaps = 28/467 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K I + + + KI F + S G L + RLF + TF +NT+I
Sbjct: 195 MQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 254
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA----DTSCLFVGLICHAQVIR 116
RG+++ + P ++ L+ QM R+ P+ +TF+F+L+ + D + H V++
Sbjct: 255 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLK 314
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG+ + FV+N L+HLYA A ++F+ V DV+SW+ L+ + ++G++ +ARQ+
Sbjct: 315 LGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQV 374
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F +MPE++ VSW+ M++GY Q +EALE F M+ G RP+ +V ++AC LG L
Sbjct: 375 FYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDL 434
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ G +H Y+D NG + L A+IDMYAKCGC++ A VF++M + + + S+IS
Sbjct: 435 ETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISAC 494
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
ANH + A +F M G+ P+ ESM YG+E G
Sbjct: 495 ANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAG 554
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
V+HYGC+VD+LGRAG LE A K++ M + ++ V GALL ACR++GDV++G+ ++ L+
Sbjct: 555 VEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI 614
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
E D G ++LL +IY + + ++RR M+ N +K GCS +
Sbjct: 615 ELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 661
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 266/459 (57%), Gaps = 25/459 (5%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L + F +Q +TF +N +IR + + A + QM R P+ +++ F L+A
Sbjct: 87 LHYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALKA 146
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
CA L + H+QV + G+ S +V+N L+H+Y+ +C++ A ++FD S +RDV+S+
Sbjct: 147 CAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVVSY 206
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+L++G+ K+G+ AR++FD MP +++VSW ++I GY Q EA+ F+ M
Sbjct: 207 NALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLE 266
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P++ +V AL+ACA LG L++G+ IH Y+ +N I+ D L T ++D YAK GCI+TA V
Sbjct: 267 PDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTAIKV 326
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------- 320
F+ P++ + + +++ G+A H S + F RM G+ P+
Sbjct: 327 FELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVGCSHGGLV 386
Query: 321 -------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
+ M IYG+ ++HYGC+ DLL RAG+++ A ++ + +P+ D +V LL
Sbjct: 387 DEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMGGDIFVWSGLLG 446
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE-VRK 432
CR+HG++++ ++ + ++E + GV+ +L+N+YA+ ++W V K+RR M N V+K
Sbjct: 447 GCRIHGNIEIAEQAAKQVMELKPEDGGVYSILANVYANADRWEDVVKIRRSMSSNRAVKK 506
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKH 471
G S I++ G+ EF++GE + EI ++L GI +H
Sbjct: 507 NAGRSSIQLGGLTHEFLAGESLHAQSSEIYMVLDGIREH 545
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 115/274 (41%), Gaps = 36/274 (13%)
Query: 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN 87
GF A G+ +F + R + W ++I G+A+ + +A L+ M+ P+
Sbjct: 212 GFVKA---GEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLEPD 268
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
N L ACA L G H + + ++ F+ GL+ YA C+D A K+F+
Sbjct: 269 NIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTAIKVFE 328
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+S ++ +I+W +++ G A G + F +M E
Sbjct: 329 LSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMME------------------------- 363
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYA 266
G +P+ +G L C+ G +D+ + + ++ G+ ++ + D+ A
Sbjct: 364 ------AGIKPDGISFLGVLVGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLA 417
Query: 267 KCGCIETACSVFDSMP-NRDVFAYTSLISGLANH 299
+ G I+ A + +P D+F ++ L+ G H
Sbjct: 418 RAGLIKEAVELTKGLPMGGDIFVWSGLLGGCRIH 451
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 173/514 (33%), Positives = 283/514 (55%), Gaps = 37/514 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ QIKQI H+ G + + K+I + + + R+ +Q+R F+W +I
Sbjct: 62 LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+A + + +A A+Y M + + P ++TFS +L+AC L +G HAQ RL
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ +V N ++ +Y C +D ARK+FD RDVISWT LI YA+ G + A ++F+ +
Sbjct: 182 CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P K+ V+W+AM+ G+ Q +EALE+F+ M+ G R + + G ++ACA LGA
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 301
Query: 241 WIHAYVDRNGIELD--IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
++G +++G+A+IDMY+KCG +E A +VF SM N++VF Y+S+I GLA
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT 361
Query: 299 HDQSASAIELFMRMQLEG-VVPN------------------------ESMSEIYGIEPGV 333
H ++ A+ LF M + + PN +SM + +G++P
Sbjct: 362 HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTR 421
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
HY C+VDLLGR G L+ A ++++ M +EP V GALL ACR+H + ++ + E L E
Sbjct: 422 DHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFE 481
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS-LIEVDGVVCEFVSGE 452
D G ++LLSN+YAS W GV +VR+ +++ ++K P S +++ +G + +F G
Sbjct: 482 LEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGN 541
Query: 453 RTNVL-------MEEIV--LLLFGIDKHLKSLCF 477
+ + +EE+V L + G L S+ +
Sbjct: 542 LNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPY 575
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 268/479 (55%), Gaps = 26/479 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D + + I C++ +G S+ + +F + ++NT I+ ++ + PI A LY +
Sbjct: 55 DNLFLSQFIDACTS--LGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTR 112
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
+ P++Y+ +L+A S + VG H Q + + V L+ +Y++C
Sbjct: 113 IRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGF 172
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+ ARKLFD +DV W +++ GY K G++ AR++F++MP++N +SW+ +I GY Q
Sbjct: 173 VSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQT 232
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+ EA+E F MQL P+ ++ L+ACA LGAL+ G WIH Y++++G+ + L
Sbjct: 233 NRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLY 292
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A+IDMYAK G I A VF++M + V ++++I+ LA H AI++F+RM+ V
Sbjct: 293 NALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVR 352
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PNE M +Y IEP ++HYGC++DLL RAG L+ A+K
Sbjct: 353 PNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQK 412
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
++ +MP E + + G+LL A H D +L + ++ L + + G +VLLSN YA+ +
Sbjct: 413 LLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGK 472
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
WN VR+ M + V+K PG S+IE++ +V EF++G+ ++ + EI +L I LK
Sbjct: 473 WNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQLK 531
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 140/364 (38%), Gaps = 99/364 (27%)
Query: 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS 189
LHLY M ++++D + + I+ G S A +F + ++
Sbjct: 38 LHLYQIHGFM------LHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYN 91
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
I + A+ + +++ G RP+ I L A L A++ GR IH +
Sbjct: 92 TAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSS 151
Query: 250 GIELDIILGTAIIDMYAKCGCI-------------------------------ETACSVF 278
+++D+ + T++I MY+ CG + ++A VF
Sbjct: 152 ALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVF 211
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------------- 321
+ MP R+V ++T+LI+G A ++ AIELF +MQLE V P+E
Sbjct: 212 NEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALE 271
Query: 322 ------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---------------- 359
+ E +G+ V Y L+D+ ++G + A +V M
Sbjct: 272 LGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALA 331
Query: 360 ------------------PIEPDNYVLGALLNACRVHGDVDLGKETVESL-----VERSL 396
+ P+ A+L+AC G VD+G+ + + +E +
Sbjct: 332 LHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKI 391
Query: 397 DHEG 400
+H G
Sbjct: 392 EHYG 395
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 263/515 (51%), Gaps = 91/515 (17%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA--CAD-------- 100
R F WNT IR A P A + +M R P+ YTF +L+A CA
Sbjct: 77 RDPFAWNTAIRLHAPAR-PRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135
Query: 101 --------------TSCLFVGLICHAQVIRLGWESYD---------FVLNGLLHLYATCN 137
T + C IR G + +D N ++ Y C
Sbjct: 136 HAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCG 195
Query: 138 CM---------------------------------DPARKLFDMSVNRDVISWTSLINGY 164
M D AR+LFD RD++ W S+I+GY
Sbjct: 196 EMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGY 255
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
A+ G++ AR +F++MPE+N +SWS +I+G+V KEALE+F M CG RP+ V
Sbjct: 256 ARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAV 315
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
GA++ACA LGAL+QGRW+H+Y+++ + D+++ TA+IDMY KCGC++ A +F+SM R
Sbjct: 316 GAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAER 375
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------------------- 321
V + +I GL H A+ LF RM+ E V ++
Sbjct: 376 SVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIF 435
Query: 322 -SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
M + +GI+P V+HYG LVDLLGRAG L+ A+ + MP+EP + G+LL ACR H
Sbjct: 436 HRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACRSHSC 495
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
V+L + +VE L + D GV+VLLSNIYA W V ++R+ M D +RK G S+IE
Sbjct: 496 VELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIE 555
Query: 441 VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
VDG + EFV+G + + +E+ L+L+ + + S+
Sbjct: 556 VDGEIHEFVNGVGSYICKDEMYLMLWNLSNMVASI 590
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R W+ +I G E +A ++ MLR P+ +
Sbjct: 259 GRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAV 318
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L G H+ + + S V L+ +Y C C+D A +F+ R V+
Sbjct: 319 SACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVV 378
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W +I G G A +F +M ++ V VD
Sbjct: 379 TWNVMIVGLGTHGFGLDAVTLFHRMEAES-----------VAVDDLS------------- 414
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETA 274
++G LTAC G + +G I + ++ GI+ + A++D+ + G ++ A
Sbjct: 415 -------VLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQA 467
Query: 275 CSVFDSMP 282
++MP
Sbjct: 468 RHAIETMP 475
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 167/494 (33%), Positives = 265/494 (53%), Gaps = 64/494 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++K+I +H+ F V K++ C+ G+ + LF + F++N MIR
Sbjct: 74 ELKKIHAHIVKFSLSQSSFLVTKMVDVCN--HYGETEYANLLFKGVADPNAFLYNAMIRA 131
Query: 63 FAEKNEPIKAFALYKQML-----RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
+ + A +YKQML + P+ +TF F++++CA C +G H V +
Sbjct: 132 YKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKF 191
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G +S V N L+ +Y C+ +D A ++ F
Sbjct: 192 GQKSNTVVENSLVEMYVKCDSLDDAHRV-------------------------------F 220
Query: 178 DKMPEKNAV--SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
++M E++A SW+A+++GY ++ + +ALE F MQ+ G P+ +V L CA LGA
Sbjct: 221 EEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGA 280
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ G+WIH Y D+ G +I + A+I+MYAKCG I+ +FD M RDV +++++I G
Sbjct: 281 LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVG 340
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
LANH ++ AIELF MQ + P+ ESM Y IEP
Sbjct: 341 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEP 400
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
GV+HYGCLV+LLG +G L+ A ++V++MP +PD+ + G+LL++CR HG++ + +E L
Sbjct: 401 GVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHL 460
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+E G +VLLSN+YA +W+GV ++R+ M ++K PGCS IEVD +V EF SG
Sbjct: 461 LELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASG 520
Query: 452 ERTNVLMEEIVLLL 465
+ + + I +L
Sbjct: 521 DDSKPFSKAICRVL 534
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 232/362 (64%), Gaps = 29/362 (8%)
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+Y C C+ ARK+FD +++VI WTS+++GY G++ AR++F++ P K+ V W+AM
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
INGYVQ + F EA+ F MQ+ +P+ +V LT CA +GAL+QG WIH Y+D GI
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGI 120
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+D ++GT++I+MY+KCGCIE A +F + +D +TS+I GLA + +++ A+ELF +
Sbjct: 121 PVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSK 180
Query: 312 MQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ +P+E SM+ IY IEP ++HYGCL+DLLGRAG
Sbjct: 181 MKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAG 240
Query: 348 MLEAAKKVVREMPIEPDNYVL----GALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403
L+ A+++++++ + +N ++ G+LL+ACR++ +V +G+ E LV+ VH
Sbjct: 241 QLDEAEELIKKI-VNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHT 299
Query: 404 LLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVL 463
LL+NIYAS +W V +VRR M+D V+KVPGCS IEVDG+V EF+ G + M EI
Sbjct: 300 LLANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEVDGIVHEFLVGNPSCSEMREIYS 359
Query: 464 LL 465
+L
Sbjct: 360 ML 361
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 45/354 (12%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSAS----DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
L+V+ ++D +I + S + G+L LF + +W MI G+ +
Sbjct: 8 LSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQF 67
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
N +A AL+++M P+ + +L CA L G H + G V
Sbjct: 68 NHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVG 127
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
L+ +Y+ C C++ A ++F +D +WTS+I G A +G+ S A ++F KM + A+
Sbjct: 128 TSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAI 187
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAY 245
P+ +G L+AC+ G +++GR + ++
Sbjct: 188 -------------------------------PDEVTFIGVLSACSHGGLVEEGREFFNSM 216
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
IE + +ID+ + G ++ A + + N + L L SA
Sbjct: 217 TSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKKIVNANNEIIVPLYGSL------LSA 270
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
++ +Q+ G E + +I + V + L ++ AG +V REM
Sbjct: 271 CRIYKNVQM-GERVAEQLVKIESRDSSV--HTLLANIYASAGRWVDVNRVRREM 321
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/482 (36%), Positives = 272/482 (56%), Gaps = 41/482 (8%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTMIR 61
+++QI + + + L F V ++I FCS S + G L + +F +Q+ +FI+ +I+
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIK 80
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF--ILRACADTSCLFVGLICHAQVIRLGW 119
GF++ + P+++ LY +ML + FS +L+AC G H QV++
Sbjct: 81 GFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHL 140
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
FV N ++ +Y ++ AR++FD NRDV+SW S+I GY K+G+I +A ++FD+
Sbjct: 141 WFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDE 200
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE++ VS +AMI+GY KE L G RP+ IV L+A A LG +++G
Sbjct: 201 MPERDLVSCNAMIDGY-----GKEMLS-------LGLRPDGPAIVSVLSAIADLGFVEEG 248
Query: 240 RWIHAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLA 297
+W+HAYV N IEL +G+A+IDMY+KCG IE A VF S+ +R ++ + S+ISGLA
Sbjct: 249 KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLA 308
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H + A+++F+ M+ + PNE SM E Y I P +
Sbjct: 309 IHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRI 368
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
QHYGC++DL GRAG LE A V++ MP E D A+L+A HG +++GK +E
Sbjct: 369 QHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIE 428
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ D +VLLSNIYA +W+ V K+R M V+K+ GCS + V+G V EF+ G+
Sbjct: 429 LAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKE 488
Query: 454 TN 455
+
Sbjct: 489 LD 490
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 176/503 (34%), Positives = 270/503 (53%), Gaps = 63/503 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++QIKQ+ + + + G L DP A+ ++I S G +H +F + + F++NT+I
Sbjct: 21 LRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSD------FLPNNYTFSFILRACADTSCLFVGLICHAQV 114
RG A P A ++Y +M R P+ TF F+LRACA G HA V
Sbjct: 81 RGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQVHAHV 140
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPA-------------------------------R 143
++ G ES FV N L+ ++ATC + A R
Sbjct: 141 VKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAAR 200
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
+LFD S +D++SW +I YAK G ++ AR++FD P+++ VSW+AMI+GYV+ K+
Sbjct: 201 ELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQ 260
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAI 261
A+E F MQ G +P+ ++ L+ACA G +D GR +H ++ + I +LG A+
Sbjct: 261 AMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNAL 320
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
IDMYAKCG + +A VF M +++V + S+I GLA H AI++F +M V P+E
Sbjct: 321 IDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDE 380
Query: 322 S------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
M + Y IEP V+HYGC+VD+L RAG+L+ A + +
Sbjct: 381 ITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIG 440
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
M IEP+ + LL ACR+HG+++L + + L++ D G VLLSNIYAS +W G
Sbjct: 441 TMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSNIYASVGEWLG 500
Query: 418 VEKVRRGMEDNEVRKVPGCSLIE 440
E +R+ M+D+ V K GC++++
Sbjct: 501 SENMRKLMDDSGVNKEAGCAVVD 523
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 269/481 (55%), Gaps = 57/481 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+ IQ++ G + D F + +I ++ D++ LF ++ +WN +I +
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCR--DVAAAQLLFDAVEENGVVMWNAIITAYM 196
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ ++ ++K ML + T ++ AC G I A++ + E D
Sbjct: 197 KNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTAC--------GRIGDAKLGKWVAEYVDE 248
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
GL+ NR+++ T+LI+ YAK G++ AR++FD M ++
Sbjct: 249 --KGLVR-------------------NRNLM--TALIDMYAKCGELGKARRLFDGMQSRD 285
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+WSAMI+GY Q D +EAL F+ MQL PN +V L+ACA LGAL+ G+W+H+
Sbjct: 286 VVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHS 345
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+ R + L IILGTA++D YAKCGCI+ A F+SMP ++ + +T+LI G+A + +
Sbjct: 346 YIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGRE 405
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ELF M+ + P +SM++ YGI+P +HYGC+V
Sbjct: 406 ALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVV 465
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG+++ A + +R MPIEP+ + ALL++C VH +V++G+E ++ +V + H G
Sbjct: 466 DLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSG 525
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
++LLSNIYAS QW +R+ M+D + K PGCSLIE+DGVV EF + + + ++E
Sbjct: 526 DYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKE 585
Query: 461 I 461
I
Sbjct: 586 I 586
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 168/362 (46%), Gaps = 59/362 (16%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLIC 110
+T +N ++R P A L+ +ML + P+ +T + L++C+ L VG
Sbjct: 82 STPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGI 141
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
A ++ G + FVL+ L+H+YA+C RDV +
Sbjct: 142 QAYAVKRGLMADRFVLSSLIHMYASC---------------RDVAA-------------- 172
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A+ +FD + E V W+A+I Y++ + E +E F M G + +V +TAC
Sbjct: 173 --AQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTAC 230
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
+G G+W+ YVD G+ + L TA+IDMYAKCG + A +FD M +RDV A++
Sbjct: 231 GRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWS 290
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE-------SMSEIYG-IEPG--VQHY---- 336
++ISG DQ A+ LF MQL V PN+ S + G +E G V Y
Sbjct: 291 AMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRK 350
Query: 337 ---------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
LVD + G ++ A + MP++ +++ AL+ +G G+E
Sbjct: 351 RLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGR---GREA 406
Query: 388 VE 389
+E
Sbjct: 407 LE 408
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 280/492 (56%), Gaps = 28/492 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++ +I + L G + V + + F + S GD+ + Y+ L + WN +I
Sbjct: 21 MSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RGF+ P K+ ++Y QMLR LP++ T+ F++++ + S +G H V++ G E
Sbjct: 81 RGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLE 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
F+ N L+H+Y + ARKLFD ++++++W S+++ YAKSG + AR +FD+M
Sbjct: 141 WDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEM 200
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
E++ V+WS+MI+GYV+ + +ALE F+ M G + N +V + ACA LGAL++G
Sbjct: 201 SERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG 260
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF--DSMPNRDVFAYTSLISGLA 297
+ +H Y+ + L +IL T++IDMYAKCG I A SVF S+ D + ++I GLA
Sbjct: 261 KTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLA 320
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
+H +++LF +M+ + P+E S+ E G EP
Sbjct: 321 SHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKE-SGAEPKS 379
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HY C+VD+L RAG+++ A + EMPI+P +LGALLN C HG+++L + + L+E
Sbjct: 380 EHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIE 439
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
++G +V L+N+YA +Q+ +R ME V+K+ G S++++DG F++ ++
Sbjct: 440 LQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAHDK 499
Query: 454 TNVLMEEIVLLL 465
T+ ++I +L
Sbjct: 500 THFHSDKIYAVL 511
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 172/481 (35%), Positives = 264/481 (54%), Gaps = 57/481 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+ +Q++ G + D F + +I ++ GD+ + LF +Q + WN MI G+
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASC--GDVVAAHVLFHTVQVKGVIAWNAMIAGYV 248
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + + ++K ML + T + AC RLG D
Sbjct: 249 KNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACG----------------RLG----DA 288
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L + YA M +R L T+L++ YAK G++ AR++FD+M ++
Sbjct: 289 NLGQWIAEYAEEKGMLRSRNLA-----------TALVDMYAKCGELDKARRLFDRMHSRD 337
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+WSAMI+GY Q D +EAL FN MQ PN +V L+ACA LGAL+ G+W+H+
Sbjct: 338 VVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHS 397
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+ R + L +ILGTA++D YAKCGCI+ A F+SMP R+ + +T+LI G+A++ +S
Sbjct: 398 YIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSRE 457
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
A+ELF M + P + SM++ YGI P ++HYGC+V
Sbjct: 458 ALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMV 517
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG+++ A + +R MPIEP+ V ALL+AC VH +V++G+E ++ +V H G
Sbjct: 518 DLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSG 577
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
++LLSN YAS QW VR+ M++ V K+PGCSLIE++G + EF + + + + E
Sbjct: 578 NYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTE 637
Query: 461 I 461
I
Sbjct: 638 I 638
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 173/390 (44%), Gaps = 58/390 (14%)
Query: 38 LSHGYRLFVCLQY--RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFI 94
LS+ RLF + R+ +N +IR F P A L+ +ML + P+ +T +
Sbjct: 118 LSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANT 177
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+++C+ L VG A + G+ FVLN L+H+YA+C
Sbjct: 178 VKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASC------------------ 219
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
G + A +F + K ++W+AMI GYV+ +KE +E F M
Sbjct: 220 -------------GDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEV 266
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+ ++ TAC LG + G+WI Y + G+ L TA++DMYAKCG ++ A
Sbjct: 267 RAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKA 326
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------SMSEIY 327
+FD M +RDV A++++ISG D+ A+ +F MQ V PN+ S +
Sbjct: 327 RRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVL 386
Query: 328 G-IEPG--VQHY-------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
G +E G V Y LVD + G ++ A K MP+ + + AL
Sbjct: 387 GALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR-NTWTWTAL 445
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGV 401
+ +G E S++E +++ V
Sbjct: 446 IKGMASNGRSREALELFSSMLEANIEPTDV 475
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 118/289 (40%), Gaps = 63/289 (21%)
Query: 167 SGQISIARQMFD--KMPEKNAVSWSAMINGYVQVDLFKEALEHF-NYMQLCGFRPNHAGI 223
S +S A ++F P ++A S++ +I +++ ++AL F + P+ +
Sbjct: 115 SAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTV 174
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
+ +C+ + L GR + AY + G +D + ++I MYA CG + A +F ++
Sbjct: 175 ANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQV 234
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI----------------- 326
+ V A+ ++I+G + +E+F M LE P + ++ +
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGM-LEVRAPFDEVTLLSVATACGRLGDANLGQW 293
Query: 327 ---YGIEPGVQHY----GCLVDLLGRAGMLEAAKKVVREM-------------------- 359
Y E G+ LVD+ + G L+ A+++ M
Sbjct: 294 IAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDR 353
Query: 360 --------------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
+ P++ + ++L+AC V G ++ GK V S + R
Sbjct: 354 CREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGK-WVHSYIRR 401
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 271/480 (56%), Gaps = 30/480 (6%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
C+A D+ RLF + N M + + +A ++ M+ S P+
Sbjct: 284 CNAIDVAK-----RLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRI 338
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
+ + +C+ + G CH V+R G+ES+D + N L+ +Y C+ D A ++FD
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
N+ V++W S++ GY ++G++ A + F+ MPEKN VSW+ +I+G VQ LF+EA+E F
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFC 458
Query: 210 YMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
MQ G + ++ +AC LGALD +WI+ Y+++NGI+LD+ LGT ++DM+++C
Sbjct: 459 SMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRC 518
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G E+A S+F+S+ NRDV A+T+ I +A + AIELF M +G+ P+
Sbjct: 519 GDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGAL 578
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
SM +++G+ P HYGC+VDLLGRAG+LE A +++ +MP+EP+
Sbjct: 579 TACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPN 638
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ + +LL ACRV G+V++ E + + + G +VLLSN+YAS +WN + KVR
Sbjct: 639 DVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLS 698
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
M++ +RK PG S I++ G EF SG+ ++ M I +L + + L D + V
Sbjct: 699 MKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNV 758
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/425 (26%), Positives = 191/425 (44%), Gaps = 64/425 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQ-YRTTFIWNT 58
+ ++K LT G D + K++ C LS +F + Y T F++N+
Sbjct: 45 IDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNS 104
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IRG+A +A L+ +M+ S P+ YTF F L ACA + G+ H ++++G
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMG 164
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ FV N L+H YA C +D ARK+FD R+V+SWTS+I GYA+ A +F
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M V+ PN +V ++ACA L L+
Sbjct: 225 RMVRDEEVT------------------------------PNSVTMVCVISACAKLEDLET 254
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G ++A++ +GIE++ ++ +A++DMY KC I+ A +FD ++ ++ S
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 299 HDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHYG------------- 337
+ A+ +F M GV P+ S S++ I G +G
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374
Query: 338 --CLVDLLGRAGMLEAAKKVVREMP----IEPDNYVLGALLNACRVHGDVDLGKETVESL 391
L+D+ + + A ++ M + ++ V G + N G+VD ET E++
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVEN-----GEVDAAWETFETM 429
Query: 392 VERSL 396
E+++
Sbjct: 430 PEKNI 434
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 170/385 (44%), Gaps = 54/385 (14%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI + G D F ++ F ++ G+L ++F + R W +MI G+A
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHF--YAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212
Query: 66 KNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
++ A L+ +M+R + PN+ T ++ ACA L G +A + G E D
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+++ L+ +Y CN +D +A+++FD+ N
Sbjct: 273 MVSALVDMYMKCNAID-------------------------------VAKRLFDEYGASN 301
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+AM + YV+ L +EAL FN M G RP+ ++ A+++C+ L + G+ H
Sbjct: 302 LDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHG 361
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
YV RNG E + A+IDMY KC +TA +FD M N+ V + S+++G + + +
Sbjct: 362 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---- 360
A E F M + +V + ++ L + + E A +V M
Sbjct: 422 AWETFETMPEKNIVS----------------WNTIISGLVQGSLFEEAIEVFCSMQSQEG 465
Query: 361 IEPDNYVLGALLNACRVHGDVDLGK 385
+ D + ++ +AC G +DL K
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAK 490
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 175/507 (34%), Positives = 270/507 (53%), Gaps = 28/507 (5%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
+ H+ G D F V + F S G ++ RLF R WNT+I G+
Sbjct: 143 VLGHVQKLGFSADVFVVNAAMHFWSVR--GPMAFARRLFDESPVRDVVSWNTLIGGYVRS 200
Query: 67 NEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
P +A L+ ++ + P+ T + CA L +G H V G
Sbjct: 201 GLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVR 260
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
++N ++ +Y C ++ A +F+ NR +SWT++I G+A+ G + AR +FD+MPE++
Sbjct: 261 LMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERD 320
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
W+A++ GYVQ KEA+ F+ MQ PN +V L+AC+ LGAL+ G W+H
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHH 380
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+DR+ + L + LGT+++DMYAKCG I+ A VF+ +P ++ +TS+I GLANH +
Sbjct: 381 YIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADE 440
Query: 305 AIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCLV 340
AIE F RM G+ P+E M Y +E ++HY C++
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMI 500
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ A+++V MP++PD V GAL ACR+HG++ LG++ LVE G
Sbjct: 501 DLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSG 560
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
++VLL+N+YA +KVR M V KVPGCS IE++GVV EF+ +++++
Sbjct: 561 IYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNA 620
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEVATE 487
I L I ++ + D +E +
Sbjct: 621 IYDCLHEITLQMRHIANLIDISESGSH 647
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 123/460 (26%), Positives = 197/460 (42%), Gaps = 101/460 (21%)
Query: 6 QIQSHLTVSGTL----WDPFAVGKIIGFCSASDIGD---LSHGYRLFVCLQYR--TTFIW 56
++ +H VSG L PF + +++ + SD L H + L + F +
Sbjct: 26 KLHAHHLVSGLLSSHSTSPF-IDRLVAAFAHSDPASPRPLLHALAILASLPSPPDSAFPY 84
Query: 57 NTMIRGFA----EKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICH 111
N R + + LY+ +L S P++ TF F+++ACA G
Sbjct: 85 NAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVL 144
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
V +LG+ + FV+N +H ++ M AR+LFD S RDV+SW +LI GY +SG
Sbjct: 145 GHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPR 204
Query: 172 IARQMFDKMPEK-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A ++F ++ E NAV RP+ ++GA++ C
Sbjct: 205 EALELFWRLAEDGNAV------------------------------RPDEVTVIGAVSGC 234
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV------------- 277
A +G L+ G+ +H +VD G+ + L A++DMY KCG +E A SV
Sbjct: 235 AQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWT 294
Query: 278 ------------------FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
FD MP RDVF + +L++G + Q AI LF MQ V P
Sbjct: 295 TMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDP 354
Query: 320 NE--------SMSEIYGIEPG--VQHY-------------GCLVDLLGRAGMLEAAKKVV 356
NE + S++ +E G V HY LVD+ + G ++ A V
Sbjct: 355 NEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVF 414
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
E+P++ + +++ HG D E + +++ L
Sbjct: 415 NEIPVQ-NALTWTSMICGLANHGHADEAIEYFQRMIDLGL 453
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 262/473 (55%), Gaps = 24/473 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ +F + ++NT++ + + + + +ML+ P+ T +
Sbjct: 272 GDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTI 331
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L VG HA V R G E D + N ++ +Y C + A K+FD N+ V+
Sbjct: 332 AACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVV 391
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W SLI G + G++ +A ++F +MPE N VSW+ MI VQ +F+EA++ MQ G
Sbjct: 392 TWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQG 451
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ + +VG +AC +LGALD +WI+ Y+++N I +D+ LGTA++DM+++CG A
Sbjct: 452 IKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAM 511
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF++M RDV A+T+ I A + AIELF M + V ++
Sbjct: 512 RVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGG 571
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+M +I+G+ P + HYGC+VDLLGRAG+LE A +++ MPI+P++ + G+
Sbjct: 572 YVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSF 631
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR H +V+ E + + + + G+HVLLSNIYAS +WN V +VR M++ +
Sbjct: 632 LAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQ 691
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
KV G S IEV G++ EF SG+ ++ +I L+L I+ + + + D V
Sbjct: 692 KVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNV 744
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 172/383 (44%), Gaps = 52/383 (13%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q+ + G + D F +I F +A G + G ++F + R W ++I G++
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYAAC--GKVDLGRKVFDEMLERNVVSWTSLINGYSV 200
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
N +A L+ +M+ PN T + ACA L +G + LG +S V
Sbjct: 201 VNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLV 260
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
+N LL +Y C G + R++FD+ +KN
Sbjct: 261 VNALLDMYMKC-------------------------------GDMYAVREIFDEFSDKNL 289
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V ++ +++ YVQ L E L + M G RP+ ++ + ACA LG L G+ HAY
Sbjct: 290 VMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAY 349
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V RNG+E + AIIDMY KCG E AC VFDSM N+ V + SLI+GL + A
Sbjct: 350 VFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELA 409
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IE 362
+ +F G +P E + + ++ + +A M E A ++REM I+
Sbjct: 410 LRIF------GEMP----------ESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453
Query: 363 PDNYVLGALLNACRVHGDVDLGK 385
D + + +AC G +DL K
Sbjct: 454 GDRVTMVGIASACGYLGALDLAK 476
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 41/324 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTT----FIWNT 58
++KQ+ ++ G F + K+I C + S Y L + T + NT
Sbjct: 37 ELKQLHCNMLKKGV----FNINKLIAACVQMGTHE-SLNYALNAFKEDEGTKCSLYTCNT 91
Query: 59 MIRGFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
+IRG+A +A +Y M+ +P+N+TF F+L AC+ G+ H V+++
Sbjct: 92 LIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKM 151
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G FV N L+H YA G++ + R++F
Sbjct: 152 GLVKDLFVANSLIHF-------------------------------YAACGKVDLGRKVF 180
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+M E+N VSW+++INGY V++ KEA+ F M G PN +V A++ACA L L+
Sbjct: 181 DEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLE 240
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+ + + G++ + ++ A++DMY KCG + +FD ++++ Y +++S
Sbjct: 241 LGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYV 300
Query: 298 NHDQSASAIELFMRMQLEGVVPNE 321
H + + + M +G P++
Sbjct: 301 QHGLAGEVLVVLDEMLQKGQRPDK 324
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLC---GFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
+ +I GY L KEA+ F Y+ + G P++ L+AC+ + A +G +H
Sbjct: 90 NTLIRGYAASGLCKEAI--FIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGV 147
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V + G+ D+ + ++I YA CG ++ VFD M R+V ++TSLI+G + + + A
Sbjct: 148 VVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIE 362
+ LF M E+ G+EP C + + LE KKV + E+ ++
Sbjct: 208 VCLFFE-----------MVEV-GVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVK 255
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+ V+ ALL+ GD+ +E + +++L
Sbjct: 256 SNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNL 289
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 271/480 (56%), Gaps = 30/480 (6%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
C+A D+ RLF + N M + + +A ++ M+ S P+
Sbjct: 284 CNAIDVAK-----RLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRI 338
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
+ + +C+ + G CH V+R G+ES+D + N L+ +Y C+ D A ++FD
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
N+ V++W S++ GY ++G++ A + F+ MPEKN VSW+ +I+G VQ LF+EA+E F
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFC 458
Query: 210 YMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
MQ G + ++ +AC LGALD +WI+ Y+++NGI+LD+ LGT ++DM+++C
Sbjct: 459 SMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRC 518
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G E+A S+F+S+ NRDV A+T+ I +A + AIELF M +G+ P+
Sbjct: 519 GDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGAL 578
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
SM +++G+ P HYGC+VDLLGRAG+LE A +++ +MP+EP+
Sbjct: 579 TACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPN 638
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ + +LL ACRV G+V++ E + + + G +VLLSN+YAS +WN + KVR
Sbjct: 639 DVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLS 698
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
M++ +RK PG S I++ G EF SG+ ++ M I +L + + L D + V
Sbjct: 699 MKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNV 758
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/425 (26%), Positives = 191/425 (44%), Gaps = 64/425 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQ-YRTTFIWNT 58
+ ++K LT G D + K++ C LS +F + Y T F++N+
Sbjct: 45 IDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNS 104
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IRG+A +A L+ +M+ S P+ YTF F L ACA + G+ H ++++G
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMG 164
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ FV N L+H YA C +D ARK+FD R+V+SWTS+I GYA+ A +F
Sbjct: 165 YAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFF 224
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M V+ PN +V ++ACA L L+
Sbjct: 225 RMVRDEEVT------------------------------PNSVTMVCVISACAKLEDLET 254
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G ++A++ +GIE++ ++ +A++DMY KC I+ A +FD ++ ++ S
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 299 HDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHYG------------- 337
+ A+ +F M GV P+ S S++ I G +G
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374
Query: 338 --CLVDLLGRAGMLEAAKKVVREMP----IEPDNYVLGALLNACRVHGDVDLGKETVESL 391
L+D+ + + A ++ M + ++ V G + N G+VD ET E++
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVEN-----GEVDAAWETFETM 429
Query: 392 VERSL 396
E+++
Sbjct: 430 PEKNI 434
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 170/385 (44%), Gaps = 54/385 (14%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI + G D F ++ F ++ G+L ++F + R W +MI G+A
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHF--YAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212
Query: 66 KNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
++ A L+ +M+R + PN+ T ++ ACA L G +A + G E D
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+++ L+ +Y CN +D +A+++FD+ N
Sbjct: 273 MVSALVDMYMKCNAID-------------------------------VAKRLFDEYGASN 301
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+AM + YV+ L +EAL FN M G RP+ ++ A+++C+ L + G+ H
Sbjct: 302 LDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHG 361
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
YV RNG E + A+IDMY KC +TA +FD M N+ V + S+++G + + +
Sbjct: 362 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---- 360
A E F M + +V + ++ L + + E A +V M
Sbjct: 422 AWETFETMPEKNIVS----------------WNTIISGLVQGSLFEEAIEVFCSMQSQEG 465
Query: 361 IEPDNYVLGALLNACRVHGDVDLGK 385
+ D + ++ +AC G +DL K
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAK 490
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/474 (35%), Positives = 258/474 (54%), Gaps = 28/474 (5%)
Query: 9 SHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNE 68
+H+ G D F V F S G + RLF R WNT+I G+ +
Sbjct: 149 AHVLRLGLDSDVFVVNAATHFLSIR--GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGN 206
Query: 69 PIKAFALYKQMLRSDFL--PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
P +A L+ +M+ D + P+ T + C L +G H V G ++
Sbjct: 207 PAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLM 266
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N L+ +Y C ++ A+ +F+ +R V+SWT++I G+AK G + AR++FD+MPE++
Sbjct: 267 NALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVF 326
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
W+A++ GYVQ KEAL F+ MQ P+ +V LTAC+ LGAL+ G W+H Y+
Sbjct: 327 PWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYI 386
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
+++ + + LGT++IDMYAKCG IE A +F +P ++ +T++I GLANH + AI
Sbjct: 387 EKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAI 446
Query: 307 ELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCLVDL 342
E F M G P+E M Y +E ++HY C++DL
Sbjct: 447 EHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDL 506
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402
LGRAG L+ A+++V MP+EPD V GA+ ACR+ G++ LG++ LVE G++
Sbjct: 507 LGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIY 566
Query: 403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
VLL+N+YA +KVR M V KVPGCS IE++GVV EF+ +++++
Sbjct: 567 VLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHM 620
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 168/378 (44%), Gaps = 85/378 (22%)
Query: 71 KAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL 129
+ LY+ +LRS P++ TF F+L+ACA G A V+RLG +S FV+N
Sbjct: 107 RCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAA 166
Query: 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS 189
H + M+ AR+LFD S RD++SW +LI GY + G + A ++F +M ++AV
Sbjct: 167 THFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAV--- 223
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
RP+ ++ A++ C + L+ GR +H +VD +
Sbjct: 224 --------------------------VRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSD 257
Query: 250 GIELDIILGTAIIDMYAKCGCIETACS-------------------------------VF 278
G+ + L A++DMY KCG +E A S VF
Sbjct: 258 GVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVF 317
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIE 330
D MP RDVF + +L++G Q A+ LF MQ VVP+E + S++ +E
Sbjct: 318 DEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALE 377
Query: 331 PG--VQHY-------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
G V Y L+D+ + G +E A + +E+P E + A++
Sbjct: 378 MGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP-EKNALTWTAMICGL 436
Query: 376 RVHGDVDLGKETVESLVE 393
HG + E +++E
Sbjct: 437 ANHGHANEAIEHFRTMIE 454
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/435 (35%), Positives = 246/435 (56%), Gaps = 24/435 (5%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R WN++I G+ + +P +A +Y+QM+ P+ T ++ ACA L +G
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREI 277
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H + G ++N L+ +Y C ++ + LFD + V+SWT++I GYAK+G +
Sbjct: 278 HRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLL 337
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
+A ++F MPEKN V+W+AMI VQ +L EALE F MQ +P+ ++ L+AC
Sbjct: 338 DMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSAC 397
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
+ LGALD G W H Y+ ++ + LD+ LGTA+IDMYAKCG + A VF+ MP R+ +T
Sbjct: 398 SQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWT 457
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEI 326
++I GLA + AI F +M G++P+E M
Sbjct: 458 AIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSR 517
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+ + P +HY C+V+LLGRAG+LE A+++++ MP+E D V GAL AC +H ++ +G+
Sbjct: 518 FNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGER 577
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
L++ G++VLL+N+Y +W + +R+ M + V K PG S IEV+G++
Sbjct: 578 AASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIIN 637
Query: 447 EFVSGERTNVLMEEI 461
EF+ ++++ E+I
Sbjct: 638 EFIVRDKSHPQSEQI 652
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 200/399 (50%), Gaps = 51/399 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+KQIQ+ + ++G + D FA ++I FC+ S+ +L + ++ LQ F WN +IRG
Sbjct: 68 QLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRG 127
Query: 63 FAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
E P K LYK+ML R+ P+NYT+SF+ + CA+ ++G QV+++G++
Sbjct: 128 CVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDK 187
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
++ NG++H+ + A K+FD RD++SW SLINGY + Q P
Sbjct: 188 DMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQ-----------P 236
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+ + MI +V +P+ ++G ++ACA L +L GR
Sbjct: 237 REAMGIYQQMITEHV--------------------KPDEVTMIGVVSACAQLESLKLGRE 276
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IH Y++ +G+ L I L A++DMY KCG +E +FD+M + V ++T++I G A +
Sbjct: 277 IHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGL 336
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP- 360
A +LF M + VV +M I VQ A + A ++ REM
Sbjct: 337 LDMAGKLFHDMPEKNVVAWNAM-----IGSCVQ-----------ANLSFEALELFREMQW 380
Query: 361 --IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
++PD + L+AC G +D G T + + +L
Sbjct: 381 SNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLS 419
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 181/526 (34%), Positives = 275/526 (52%), Gaps = 66/526 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQIQ+H+T + + F V +++ FC+ SD GD++H + LF LQ T+IWNTMI
Sbjct: 63 MLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMI 122
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+++ F + QM++ + +F F L+AC + G H V ++G+
Sbjct: 123 RGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVVWKMGFV 182
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V NGL+H Y C+ AR +FD RDV+SWTS+I+GY+K A ++FD M
Sbjct: 183 YTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSM 242
Query: 181 -----PEKNAVSW-----------------------------------SAMINGYVQVDL 200
E N V+ +A+++ YV+
Sbjct: 243 LMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGC 302
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA-YVDRNGIELDIILGT 259
A E F+ M F P + L C LG LD G+WIH YV E+ +IL
Sbjct: 303 LDSAREIFDTMG-AAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILAN 361
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
A+IDMYAKCG I A VF+ MP R++ ++ S+I+ A+H + A+ +F RM G P
Sbjct: 362 ALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKP 421
Query: 320 N------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ ++M YGIEP +HY C++DLLGR G+LE A ++
Sbjct: 422 DDITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYEL 481
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
+ +MP+EP GAL++ACR+HG+V++ K L+E + G++VLL+NI AS +W
Sbjct: 482 ITKMPMEPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICASGRRW 541
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
V+ RR M + V+K+PG S++EV+G EF++G+ ++ E I
Sbjct: 542 GDVKMARRMMRERRVKKIPGRSIVEVEGQFHEFLAGDESHPQSEGI 587
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/515 (33%), Positives = 269/515 (52%), Gaps = 64/515 (12%)
Query: 1 MKQIKQIQSHLTVSGTLW-DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K + ++ S + ++ L DP K++ SA G+ S +F + +N M
Sbjct: 51 IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQ--GETSVARYIFDRSLEKNVVFFNVM 108
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR + N ++A ++++ ML F P++YTF +L+AC+ L VGL H ++++G
Sbjct: 109 IRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL 168
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA------ 173
++ F+ N L+ +Y C C+ ARK+ D RDV+SW S++ GYA+SGQ A
Sbjct: 169 DTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKE 228
Query: 174 -------------------------------RQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
MF++M +KN +SW+ MI YV +
Sbjct: 229 MDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPN 288
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EA+ F M+ CG +P+ I L AC L AL GR +H Y+++ ++ +++L A++
Sbjct: 289 EAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALL 348
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-- 320
DMYAKCGC+E A VFD M RDV ++TS++S Q A+ LF +M G P+
Sbjct: 349 DMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSI 408
Query: 321 ----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
M+E YGI P ++H+ C+VDL GRAG +E A +++
Sbjct: 409 AFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQ 468
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
MP+EP+ V GALL+ACRVH +D+G + L + + G +VLLSNIYA W V
Sbjct: 469 MPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDV 528
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
VR M+ ++KVPG S +E++G V F++G++
Sbjct: 529 MNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQ 563
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/512 (33%), Positives = 282/512 (55%), Gaps = 28/512 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ QIKQI H+ G + + K+I + + + R+ +Q+R F+W +I
Sbjct: 63 LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVI 122
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+ + + +A A+Y M + + P ++TFS +L+AC L +G HAQ RL
Sbjct: 123 RGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF 182
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ +V N ++ +Y C + ARK+FD RDVISWT LI YA+ G + A +F+ +
Sbjct: 183 CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESL 242
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P K+ V+W+AM+ G+ Q +EALE+F+ M+ G R + + G ++ACA LGA
Sbjct: 243 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 302
Query: 241 WIHAYVDRNGIELD--IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
++G +++G+A+IDMY+KCG +E A +VF SM N++VF+Y+S+I GLA
Sbjct: 303 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLAT 362
Query: 299 HDQSASAIELFMRMQLEGVV-PNE------------------------SMSEIYGIEPGV 333
H ++ A++LF M + + PN SM + +G+EP
Sbjct: 363 HGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTR 422
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
HY C+VDLLGRAG L+ A ++++ M +EP V GALL ACR+H + D+ + E L E
Sbjct: 423 DHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFE 482
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS-LIEVDGVVCEFVSGE 452
D G ++LLSN+Y+S W GV VR+ +++ ++K P S +++ +G + +F G
Sbjct: 483 LEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGN 542
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ + ++I L + + L +L + D + V
Sbjct: 543 LNHPMSKKIQDKLEELVERLTALGYQPDLSSV 574
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 171/494 (34%), Positives = 274/494 (55%), Gaps = 32/494 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI ++ +G F + K++ + DL + LF + + +++N I
Sbjct: 1 MNQLKQIHAYSLRNGLDHTKFLIEKLL------QLPDLPYACTLFDQIPKPSVYLYNKFI 54
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F+ P + + LY QM PN Y+F+F+ ACA ++ G + H+ + G+
Sbjct: 55 QTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFA 114
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F + LL +YA + AR+LFD RD+ +W SLI GYA+SG + A ++F+KM
Sbjct: 115 SDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKM 174
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-LCGFRPNHAGIVGALTACAFLGALDQG 239
P +N +SW+A+I+GY Q + +ALE F ++ G +PN I L AC+ LGALD G
Sbjct: 175 PVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIG 234
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLAN 298
+ I AY NG + + A+++++A+CG IE A VFD + R++ ++ ++I GLA
Sbjct: 235 KRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAV 294
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + A++L+ +M + + P+ ESM + + P ++
Sbjct: 295 HGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLE 354
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGCLVDLLGRAG L+ A +++ MP+ PD+ + G LL AC HG+V+LG+ ESL +
Sbjct: 355 HYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKL 414
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +V+LSNIYA W+GV ++R+ M+ + K G S IEV + EF+ +R+
Sbjct: 415 EPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRS 474
Query: 455 NVLMEEIVLLLFGI 468
++ EI LL I
Sbjct: 475 HLKSGEIYALLHKI 488
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/474 (36%), Positives = 259/474 (54%), Gaps = 56/474 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L RLF + R WN MI G+A+ +A A +++M R++ PN T +L
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA + L +G + + G S ++N L+ +Y+ C
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKC------------------- 312
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G + AR +F+ + EK+ +SW+ MI GY ++ +KEAL F MQ
Sbjct: 313 ------------GDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETA 274
PN V L ACA+LGALD G+WIHAY+D+ + L + L T++IDMYAKCG IE A
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAA 420
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
VF M + + ++ ++ISGLA H + A+ELF +M+ EG P++
Sbjct: 421 KQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHA 480
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM E Y I P +QHYGC++DLLGRAG+ + A+ +++ M ++PD + G+
Sbjct: 481 GLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGS 540
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACRVHG+V+LG+ + L E ++ G +VLLSNIYA+ +W+ V ++R + D +
Sbjct: 541 LLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGM 600
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+KVPGCS IEVD VV EF+ G++ + ++I +L ID+ L+ D +EV
Sbjct: 601 KKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEV 654
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 230/452 (50%), Gaps = 62/452 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +KQI S + +G FA+ K+I FC+ S G+LS+ LF ++ FIWNTMIR
Sbjct: 46 QNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIR 105
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G + + P+ A Y +ML PN+YTF F+L++CA G H V++LG ES
Sbjct: 106 GNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLES 165
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV L+++YA + A +F S RD +S+T+LI GY G + AR++F+++P
Sbjct: 166 DPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIP 225
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
++AVSW+AMI GY Q F+EAL F M+ PN + +V L+ACA G+L+ G W
Sbjct: 226 VRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNW 285
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+ ++++ +G+ ++ L A+IDMY+KCG ++ A +F+ + +D+ ++ +I G ++ +
Sbjct: 286 VRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNS 345
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC----------------------- 338
A+ LF +MQ V PN+ I P + G
Sbjct: 346 YKEALALFRKMQQSNVEPNDVT--FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSL 403
Query: 339 ---LVDLLGRAGMLEAAKKV----------------------------------VREMPI 361
L+D+ + G +EAAK+V +R+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
EPD+ +L+AC G V+LG++ S+VE
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/361 (42%), Positives = 226/361 (62%), Gaps = 24/361 (6%)
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D AR+LFD RD++ W S+I+GYA+ G++ AR +F++MPE+N +SWS +I+G+V+
Sbjct: 230 VDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRC 289
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
KEALEHF M CG RP+ VGA++ACA LGAL+QGRW+H+Y+++ + D+++
Sbjct: 290 GEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQ 349
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
TA+IDMY KCG ++ A +F+SMP R V + +I GL H A+ LF RM+ E V
Sbjct: 350 TALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVA 409
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
++ M + +GI+P V+HYG LVDLLGRAG L+ A+
Sbjct: 410 VDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARH 469
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ MP+EP + G+LL ACR H V+L + +VE L D GV+VLLSNIYA
Sbjct: 470 AIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGM 529
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
W V ++R+ M D +RK G S+IEVDG + EFV+G +++ +EI L+L+ + K + S
Sbjct: 530 WGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNGGGSHLCTDEIYLMLWNLSKMVAS 589
Query: 475 L 475
+
Sbjct: 590 I 590
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 164/353 (46%), Gaps = 59/353 (16%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R F WNT IR A P A + +M P+ YTF +L+AC GL+
Sbjct: 77 RDPFPWNTAIRLHA-PGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRAGLLV 135
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMD--PARKLFDMS--VNRDVISWTSLINGYAK 166
HA+ +R G + F +N L+ Y C +D RK+FD + V+RD++SW S++ GY
Sbjct: 136 HAEAVRRGLGADLFTVNALISFY--CRILDCISGRKVFDEAGGVSRDLVSWNSMVAGYVG 193
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226
G++ +A+++FD+MP+++A SW A+I+GY + AG+
Sbjct: 194 CGEMGLAQELFDEMPQRDAFSWGALIDGY--------------------GKQGGAGV--- 230
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
D+ R + + E D++ ++ID YA+ G ++ A S+F+ MP R+V
Sbjct: 231 ----------DRARELFDQM----TERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNV 276
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA 346
+++ +I G ++ A+E F M G+ P+ V G V +
Sbjct: 277 ISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDR-----------VAAVGA-VSACAQL 324
Query: 347 GMLEAAK---KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
G LE + + + + D V AL++ G +DL ES+ ERS+
Sbjct: 325 GALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSV 377
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 116/269 (43%), Gaps = 9/269 (3%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F+ G +I + LF + R WN+MI G+A +A +L+++
Sbjct: 211 DAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEE 270
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M N ++S ++ L ++R G G + A
Sbjct: 271 MPER----NVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGA 326
Query: 139 MDPARKLFD----MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
++ R L V DV+ T+LI+ Y K G++ +A +F+ MPE++ V+W+ MI G
Sbjct: 327 LEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVG 386
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIEL 253
+A+ F+ M+ + ++ LTAC G + +G I + ++ GI+
Sbjct: 387 LGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDP 446
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ A++D+ + G ++ A ++MP
Sbjct: 447 KVEHYGALVDLLGRAGRLDQARHAIETMP 475
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 170/458 (37%), Positives = 256/458 (55%), Gaps = 34/458 (7%)
Query: 14 SGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
+G WD + ++ + +G + ++F + R +WN M+R + A
Sbjct: 78 TGFRWDAYTGSSLMEMYTM--LGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAV 135
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF---VLNGLL 130
AL +QM RS P+ T + AC+ L +G H + + + F V N LL
Sbjct: 136 ALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV----FGFNLPVANALL 191
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA 190
+Y +C++ A KLF+ R++ISWT L++GY +GQ+ AR +F++ EK+ + W+A
Sbjct: 192 DMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTA 251
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
MIN VQ F+EAL F MQ+ P+ +V LT CA LGALDQG WIH Y ++
Sbjct: 252 MINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRK 311
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+++D +LGTA+IDMY+KCG IE + VF M RD A+T++I GLA + Q+ A+ELF
Sbjct: 312 MKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQ 371
Query: 311 RMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRA 346
MQ V P+ +M E+Y IEP V+HY CLV+LLGRA
Sbjct: 372 DMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRA 431
Query: 347 GMLEAAKKVVREMPIEPDNYVL-GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405
G+L+ A++++ ++PI D L GALL AC+ HG+V++ + + + E+ V++L+
Sbjct: 432 GLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLM 491
Query: 406 SNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
SN+YA+ +W V +VR M V+K GCSLIEV G
Sbjct: 492 SNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKG 529
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 156/365 (42%), Gaps = 60/365 (16%)
Query: 40 HGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA 99
HG L+ C N +IR A + + A+Y + + +++T+ F+LRA
Sbjct: 10 HGMPLWEC---------NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVG 60
Query: 100 DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTS 159
G HA I+ G+ + + L+ +Y +D ARK+FD +R ++ W
Sbjct: 61 VLKLSVEGRKAHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNM 120
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
++ Y + G+ S A + ++M G P+
Sbjct: 121 MVRCYIRCGRYSAAVALSEQMERS-------------------------------GVTPD 149
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
+V A+TAC+ L GR IH Y+D N ++ + A++DMY K C+E A +F+
Sbjct: 150 RVTLVTAVTACSRARDLSLGRRIHVYMD-NVFGFNLPVANALLDMYTKNDCLEEAVKLFE 208
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339
MP R++ ++T L+SG Q A LF + + + ++ +M I VQH
Sbjct: 209 QMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAM-----INACVQH---- 259
Query: 340 VDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
G E A + R+M +EPD + + LL C G +D G+ + +R +
Sbjct: 260 -------GCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKM 312
Query: 397 DHEGV 401
+ V
Sbjct: 313 KIDAV 317
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 172/515 (33%), Positives = 268/515 (52%), Gaps = 64/515 (12%)
Query: 1 MKQIKQIQSHLTVSGTLW-DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K + ++ S + ++ L DP K++ SA G+ S +F + +N M
Sbjct: 51 IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQ--GETSVARYIFDRSLEKNVVFFNVM 108
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR + N ++A ++++ ML F P++YTF +L+AC+ L VGL H ++++G
Sbjct: 109 IRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL 168
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA------ 173
++ F+ N L+ +Y C C+ ARK+ D RDV+SW S++ GYA+SGQ A
Sbjct: 169 DTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKE 228
Query: 174 -------------------------------RQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
MF++M +KN +SW+ MI YV +
Sbjct: 229 MDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPN 288
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EA+ F M+ CG +P+ I L AC L AL GR +H Y+++ + +++L A++
Sbjct: 289 EAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALL 348
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-- 320
DMYAKCGC+E A VFD M RDV ++TS++S Q A+ LF +M G P+
Sbjct: 349 DMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSI 408
Query: 321 ----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
M+E YGI P ++H+ C+VDL GRAG +E A +++
Sbjct: 409 AFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQ 468
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
MP+EP+ V GALL+ACRVH +D+G + L + + G +VLLSNIYA W V
Sbjct: 469 MPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDV 528
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
VR M+ ++KVPG S +E++G V F++G++
Sbjct: 529 MNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQ 563
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 170/506 (33%), Positives = 278/506 (54%), Gaps = 67/506 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+ +H+ +G ++ + + +I+ S++ + +H +F + T F++NT+I
Sbjct: 22 LDTLKQVHAHMITTGLIFHTYPLSRIL-LISSTIV--FTHALSIFNHIPNPTIFLYNTLI 78
Query: 61 RGFAE-KNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
A K AF+LY ++L L PN +TF + +AC L G H V++
Sbjct: 79 SSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKF- 137
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
L TC D +L+N YAK G++ R +F+
Sbjct: 138 -------------LEPTC----------------DPFVQAALLNYYAKCGKVGACRYLFN 168
Query: 179 KMPEKNAVSWSAMINGYVQ--------VDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
++ + + SW+++++ YV V L E L F MQ + N +V ++AC
Sbjct: 169 QISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISAC 228
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
A LGAL QG W H YV ++ ++L+ +GTA+IDMY+KCGC++ AC +FD +P+RD Y
Sbjct: 229 AELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYN 288
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
++I G A H A++LF +M LEG+ P+ ESM E+
Sbjct: 289 AMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEV 348
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
YG+EP ++HYGCLVDLLGRAG L A++ V MP++P+ + +LL A RVHG++++G+
Sbjct: 349 YGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEV 408
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
++ L++ + G +VLLSN+YAS +W+ V++VR+ M+D+ + KVPG SL+EV G +
Sbjct: 409 VLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMH 468
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHL 472
EF+ G++T+ +EI L L + + L
Sbjct: 469 EFLMGDKTHPRSKEIYLKLEEMSRRL 494
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/475 (35%), Positives = 267/475 (56%), Gaps = 31/475 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ + +G D + ++G +A +G + +++F + R WN +I +
Sbjct: 50 EKVHGYAVKTGLESDSYVCNSLMGMYAA--LGKMEITHKVFDEMPERDVVSWNGLISSYV 107
Query: 65 EKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
A +++++M R S+ + T L AC+ L +G + V+ +E
Sbjct: 108 GHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVV-TEFEMSV 166
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
N L+ ++ C C+D AR +FD +++V WTS+++GY +G+ AR++F++ P K
Sbjct: 167 RTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVK 226
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ V W+AM+NGYVQ + F EALE F MQ RP++ +V LT CA GAL+QG+WIH
Sbjct: 227 DVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIH 286
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y+ N + +D ++GTA++DMYAKCGCIETA VF M RD ++TSLI GLA + S
Sbjct: 287 GYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSG 346
Query: 304 SAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCL 339
A++L+ M+ GV ++ SM+E + I+P +HY CL
Sbjct: 347 RALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCL 406
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLG---ALLNACRVHGDVDLGKETVESLVERSL 396
+DLL RAG+L+ A++++ +M E D ++ +LL+A R +G+V + + E L + +
Sbjct: 407 IDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEV 466
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
H LL+++YAS +W V VRR M+D +RK PGCS IEVDGV EF+ G
Sbjct: 467 SDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEVDGVSHEFIVG 521
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 52/331 (15%)
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
M++ AE K AL+ ++ P+N+T +L++ + G H ++ G
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
ES +V N L+ +YA M+ K+FD RDV+SW LI+ Y G+ A +F
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M ++ + + IV L+AC+ L L+
Sbjct: 121 RMSRES------------------------------NLKADEGTIVSTLSACSVLKNLEI 150
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G I+ YV E+ + G A++DM+ KCGC++ A ++FDSM +++V +TS++SG +
Sbjct: 151 GERIYRYV-VTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVS 209
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIY----GIEPGVQHYGCLVDLLGRAGMLEAAKK 354
+ ++ A ELF R ++ VV +M Y + ++ + C ++ A+
Sbjct: 210 NGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRC----------MQTAR- 258
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
I PDN+VL +LL C G ++ GK
Sbjct: 259 ------IRPDNFVLVSLLTGCAQTGALEQGK 283
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 171/499 (34%), Positives = 273/499 (54%), Gaps = 29/499 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+ QI H ++G+ + + ++ ++ + Y++F + +N MI
Sbjct: 143 LSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENE--KMGLAYQVFQQMAAPDAVSFNIMI 200
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW- 119
G+A+K I+A +M+ P+ +T +L C +G HA + R G
Sbjct: 201 FGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLI 260
Query: 120 ESYDFVLN-GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+S + +LN LL +Y C + A+ +F++ V +D ISW ++I GYAK G + IA F+
Sbjct: 261 KSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFE 320
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
MP ++ VSW+++I GY Q F M P+ I+ ++A A +GAL
Sbjct: 321 DMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHH 380
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GRWIH +V R +++D LG+A IDMY KCG I+ AC VF + +DV +T++I+G A
Sbjct: 381 GRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAF 440
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H + A++LF MQ E V+PN+ SM E YGIEPGV+
Sbjct: 441 HGYGSKALQLFYEMQ-EYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVE 499
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGCLVDLLGR+G K V+ MP++P + GA+L+ACR +G++++ + + L++
Sbjct: 500 HYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKL 559
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ EG +VLLSNIYA++ +W +K+R ME V+K GCS + VDG++ EFV+ ++
Sbjct: 560 EPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKR 619
Query: 455 NVLMEEIVLLLFGIDKHLK 473
+ EI +LF + +K
Sbjct: 620 HPRWIEIQSILFCLKSEMK 638
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 103/434 (23%), Positives = 171/434 (39%), Gaps = 94/434 (21%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVC-LQYRTTFIWNTMIR 61
KQI + + + F + ++I F + + +L LF + +I+NTMI
Sbjct: 46 HFKQILAQIMRINLIGQTFPMSRLILFSAITHPENLDMAVLLFRHHTPHPNLYIYNTMIS 105
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ ++FA Y +L S PN TF F+L+A S + + + CHA I G
Sbjct: 106 ALSLSLN--QSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQV-MQIHCHA--IITGSFY 160
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
Y ++ N L+ +Y M A ++F D +S+ +I GYAK G
Sbjct: 161 YGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNI---------- 210
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
EAL+ + M G +P+ ++G L C LG G+
Sbjct: 211 ---------------------EALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKS 249
Query: 242 IHAYVDRNGI--ELDIILGTAIIDMYAKC------------------------------- 268
+HA+++R G+ ++IL A++DMY KC
Sbjct: 250 VHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKV 309
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G +E A + F+ MP RD+ ++ S+I+G A LF M E + P+
Sbjct: 310 GNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLV 369
Query: 321 ESMSEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDN 365
+ +EI + G +G +D+ + G ++ A V RE+ E D
Sbjct: 370 SAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVT-EKDV 428
Query: 366 YVLGALLNACRVHG 379
V ++ HG
Sbjct: 429 TVWTTMITGFAFHG 442
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 260/477 (54%), Gaps = 57/477 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASD-IGDLSHGYRLFVCLQYRTTFIWNTM 59
++++KQIQ++ T+ +P + K+I FC+++ I + H +R+F + ++NTM
Sbjct: 48 LRELKQIQAY-TIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTM 106
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG+A ++P++A L Q+L S LP++YTFS +L+ACA L G H ++LG
Sbjct: 107 ARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGV 166
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+V L+++Y CN +D AR++FDK
Sbjct: 167 GDNMYVCPTLINMYTACNDVD-------------------------------AARRVFDK 195
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ E V+++A+I + EAL F +Q G +P ++ AL++CA LGALD G
Sbjct: 196 IGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG 255
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIH YV +NG + + + TA+IDMYAKCG ++ A SVF MP RD A++++I A H
Sbjct: 256 RWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATH 315
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ AI + M+ V P+E SM+ YGI P ++H
Sbjct: 316 GHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKH 375
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC++DLLGRAG LE A K + E+PI+P + LL++C HG+V++ K ++ + E
Sbjct: 376 YGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELD 435
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
H G +V+LSN+ A +W+ V +R+ M D KVPGCS IEV+ VV EF SG+
Sbjct: 436 DSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGD 492
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 171/503 (33%), Positives = 279/503 (55%), Gaps = 31/503 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K +KQ ++ ++G D V K I CS + G L + Y +F T++ NTMI
Sbjct: 28 LKTLKQSHCYMIITGLNRDNLNVAKFIEACS--NAGHLRYAYSVFTHQPCPNTYLHNTMI 85
Query: 61 RGFAEKNEPIK---AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
R + +EP A +Y+++ P+ +TF F+L+ S ++ G H QV+
Sbjct: 86 RALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVF 145
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G++S V+ GL+ +Y +C + ARK+FD + +DV W +L+ GY K G++ AR +
Sbjct: 146 GFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLL 205
Query: 178 DKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+ MP +N VSW+ +I+GY + EA+E F M + P+ ++ L+ACA LG+
Sbjct: 206 EMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGS 265
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ G I +YVD G+ + L A+IDMYAK G I A VF+ + R+V +T++I+G
Sbjct: 266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAG 325
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEP 331
LA H A A+ +F RM GV PN+ SM YGI P
Sbjct: 326 LATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHP 385
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++HYGC++DLLGRAG L A +V++ MP + + + G+LL A VH D++LG+ + L
Sbjct: 386 NIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSEL 445
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ ++ G ++LL+N+Y++ +W+ +R M+ V+K+ G S IEV+ V +F+SG
Sbjct: 446 IKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISG 505
Query: 452 ERTNVLMEEIVLLLFGIDKHLKS 474
+ T+ +E I +L +D ++S
Sbjct: 506 DLTHPQVERIHEILQEMDLQIQS 528
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 170/418 (40%), Positives = 245/418 (58%), Gaps = 30/418 (7%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD-FVLNGLLHLYATCNCMDPARK 144
P++ TF F+ RA A + + L HA +RLG +D +V N L+H+YA C D AR+
Sbjct: 58 PSHLTFPFLGRAAARLASPRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARR 117
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
LFD +++SW +L++GYAK + AR +F++MP+++ VSWSAMI+G V+ +EA
Sbjct: 118 LFDEIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREA 177
Query: 205 LEHFNYMQLCG----FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
L F M+ G R N +V L ACA LG L +GR +H Y+ +G L++ L T+
Sbjct: 178 LALFEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLATS 237
Query: 261 IIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
++DMYAKCG I A VF ++P DV + ++I GLA H S ++E+F MQ GVV
Sbjct: 238 LVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVV 297
Query: 319 PNE-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
P+E E+ G+ P V+HY CLVD+LGRAG LE A V
Sbjct: 298 PDEITYLVLLSACVHGGLVGEAWRLFRSLEVQGLRPHVEHYACLVDVLGRAGHLEEAYGV 357
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
V+ MP+EP+ VLGALLNAC +HG V+LG+ LV+ DH+G ++ LSNIYA +W
Sbjct: 358 VKSMPMEPNVSVLGALLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAIARRW 417
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+K R+ ME+ V+K+PG S I+V G + F++ ++ + EI LL I +K
Sbjct: 418 QEAKKARKVMEERGVKKIPGFSEIDVGGRLHRFIAHDKAHSGSREIYALLNLITVEMK 475
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 163/474 (34%), Positives = 266/474 (56%), Gaps = 40/474 (8%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++Q+ + + G D F + + + C++ + + S+ +F + +T +WNT I+G+
Sbjct: 89 LEQVHARIIRKGLHQDHFIISQFLTLCNS--LSNFSYTTSVFNGVSSPSTVLWNTYIKGY 146
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+E +L+ +M RSD +P+ +T+ +++AC+ + G+ H +R G
Sbjct: 147 SENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDV 206
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV+ L+ LY C + ARK+FD R+V+SWT++I GYA + AR++FD+MPEK
Sbjct: 207 FVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEK 266
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQ------------LCG-FRPNHAGIVGALTAC 230
NAVSW+A+I+GYV+ + A + F+ M + G +P+ +V ++AC
Sbjct: 267 NAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSAC 326
Query: 231 AFLGALDQGRWIHAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
+ +G+L+ +W+ YV ++ I++ + A+IDM AKCG ++ A +F+ MP RD+ +Y
Sbjct: 327 SQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISY 386
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
S++ GL+ H A+ LF RM EG+ P+ ESM
Sbjct: 387 CSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKT 446
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y I P HY C+VDLLGRAG L+ A ++++ MP+EP GALL AC++H D++LG+
Sbjct: 447 DYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGE 506
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+ L E + G +VLLSNIYA+ EQW V +R M + +RK+PGCS I
Sbjct: 507 VVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 177/499 (35%), Positives = 269/499 (53%), Gaps = 64/499 (12%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLS------HGYRLFVCLQYRTTFIWN 57
++QI + + V+G + + K++ + S +G + + ++F + TF+WN
Sbjct: 17 LRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMWN 76
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
T IRG ++ ++P+ A ALY QM P+N+TF +L+AC + G + H +V RL
Sbjct: 77 TYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRL 136
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+ S V N LL +A C + A +FD S DV++W++LI GYA+ G +S+AR++F
Sbjct: 137 GFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLF 196
Query: 178 DKMPE-------------------------------KNAVSWSAMINGYVQVDLFKEALE 206
D+MP+ K+ VSW+AM+ GYV +L +EALE
Sbjct: 197 DEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALE 256
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMY 265
F+ M G P+ ++ L+ACA LG D G +HA + + N +L +LG A++DMY
Sbjct: 257 LFDEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNALVDMY 314
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--- 322
AKCG I VF + ++D+ ++ S+I GLA H + ++ LF MQ V P+E
Sbjct: 315 AKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFV 374
Query: 323 ---------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
M Y IEP ++H GC+VD+L RAG+L+ A + M I
Sbjct: 375 GVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKI 434
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
EP+ V +LL AC+VHGDV+L K E L+ +D G +VLLSN+YAS +W+G E V
Sbjct: 435 EPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWDGAENV 494
Query: 422 RRGMEDNEVRKVPGCSLIE 440
R+ M+DN V K G S +E
Sbjct: 495 RKLMDDNGVTKTRGSSFVE 513
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 152/372 (40%), Gaps = 46/372 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ RLF + WN M+ G+ N +A L+ +M P+ T +L
Sbjct: 218 GEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLL 277
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACAD G HA+++ L +L
Sbjct: 278 SACADLGD--XGEKVHAKIMELNKGKLSTLLG---------------------------- 307
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+L++ YAK G I +F + +K+ VSW+++I G +E+L F MQ
Sbjct: 308 --NALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTK 365
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ VG L AC+ G +D+G R+ + ++ IE +I ++DM A+ G ++ A
Sbjct: 366 VCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEA 425
Query: 275 CSVFDSM---PNRDVFAYTSLISGLANH---DQSASAIELFMRMQLEGVVPNESMSEIY- 327
SM PN + SL+ H + + A E +RM+++ +S +Y
Sbjct: 426 FDFIASMKIEPN--AIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYA 483
Query: 328 --GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
G G ++ L+D G V IEP+ LL AC V+GDV+L K
Sbjct: 484 SHGEWDGAENVRKLMDDNGVTKT--RGSSFVEAYRIEPNPVNGRTLLGACIVYGDVELAK 541
Query: 386 ETVESLVERSLD 397
E L+ D
Sbjct: 542 RVNEELLRLRRD 553
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 178/512 (34%), Positives = 277/512 (54%), Gaps = 67/512 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ IKQ+ + + + G L DP + +++ + + G ++H Y +F + F++NT+I
Sbjct: 21 LRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL----PNNYTFSFILRACADTSCLFVGLICHAQVIR 116
RG A P A +LY +MLR P+ TF F+LRAC G+ HA V++
Sbjct: 81 RGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVK 140
Query: 117 LGWESYDFVLNGLLHLYATCNCM-------------------------------DPARKL 145
G ES FV N L+ ++A+C + AR L
Sbjct: 141 AGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDL 200
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
FD +D++SW +I YAK G +++AR++FD++PE++ VSW+ MI+GYV+ AL
Sbjct: 201 FDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHAL 260
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV----DRNGIELDIILGTAI 261
E F MQ G +P+ ++ L+ACA G LD G+ +H+ + RNG ++LG A+
Sbjct: 261 ELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNAL 318
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
IDMYAKCG +++A VF SM ++DV + S++ GLA H +I++F +M V P+E
Sbjct: 319 IDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDE 378
Query: 322 S------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
M Y +EP ++HYGC+VD+LGRAG+L+ A + +
Sbjct: 379 ITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFID 438
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
M EP++ + LL+ACRVHG+++L K L++ D G +VLLSNIYAS +W G
Sbjct: 439 TMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFG 498
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
EK+R+ M+D+ V K G + VDG V + +
Sbjct: 499 SEKMRKLMDDSGVNKEAGQTF--VDGSVKDII 528
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 172/509 (33%), Positives = 270/509 (53%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTM 59
+ ++KQIQ++ + D + K+I FC+ + + H + LF + + ++N M
Sbjct: 42 LNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIM 101
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG+A N P AF+L+ ++L S LP++YTFS +L+ACA + L G+ H ++LG
Sbjct: 102 ARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLG- 160
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+N ++ +LIN YA+ ++ AR +FD+
Sbjct: 161 ------------------------------LNHNIYICPTLINMYAECNDMNAARGVFDE 190
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M + VS++A+I GY + EAL F +Q P ++ + +CA LGALD G
Sbjct: 191 MEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG 250
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WIH YV + G + + + TA+IDM+AKCG + A S+F+ M RD A++++I A H
Sbjct: 251 KWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATH 310
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
AI +F M+ EGV P+E SMS+ YGI PG++H
Sbjct: 311 GDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKH 370
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG L+ A V ++ I+ + LL+AC HG+V++ K +E + E
Sbjct: 371 YGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELD 430
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H G +V+LSN+YA +W V +R+ M+D V KVPGCS +EV+ VV EF SG+ +
Sbjct: 431 DAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVH 490
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ E+ L + K +K + + D + V
Sbjct: 491 CVSVELRRALDELMKEIKLVGYVPDTSLV 519
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 172/494 (34%), Positives = 281/494 (56%), Gaps = 33/494 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ ++ SG +D ++G A +G + ++F + R WN +I +
Sbjct: 136 EKVHGYVVKSG--FDACVCNSVMGMYGA--LGKMEVAKKVFDEIPERDVVSWNVLISSYV 191
Query: 65 EKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+ A A++++M R S+ + T L AC+ VG H + + E
Sbjct: 192 GHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIH-RYVDAELEMTT 250
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ N LL +Y C C+D AR +FD N++VI WTS+++GYA +G + AR++F++ P +
Sbjct: 251 KIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVR 310
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ V W+AMINGYVQ +LF EAL+ F MQ+ RP++ +V L CA GAL+QG+W+H
Sbjct: 311 DIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLH 370
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y+ N I LD ++GTA++D+YAKCGC+E A VF M RD ++TS+I GLA + ++
Sbjct: 371 GYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTS 430
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
A++ F +M+ G P+ +SM++ Y I+P +HY CL
Sbjct: 431 KALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCL 490
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLG---ALLNACRVHGDVDLGKETVESLVERSL 396
+DLL RAG+L+ A+ ++ +PIE + V+ +LL+ACR +G++ + + L +
Sbjct: 491 IDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEV 550
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
VH LL+++YAS +W V VRR M++ +RK PGCS IEV+GV+ EF+ G +++
Sbjct: 551 KDSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHM 610
Query: 457 LMEEIVLLLFGIDK 470
M++I +L + K
Sbjct: 611 EMDDIHSVLGQVTK 624
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 178/388 (45%), Gaps = 52/388 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M + QI + + G + + KI+ FC+ G + + R+ +Q ++N MI
Sbjct: 29 MAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMI 88
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ A+ K L+ ++ + P+N+T + +A + G H V++ G++
Sbjct: 89 KAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGFD 148
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ V N ++ +Y M+ A+K+FD RDV+SW LI+ Y + A +F +M
Sbjct: 149 A--CVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRM 206
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
++ + + A +V L+AC+ L + G
Sbjct: 207 RRES------------------------------NLKADEATVVSTLSACSVLRNQEVGE 236
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH YVD +E+ +G A++DMY KCGC++ A ++FD M N++V +TS++SG A++
Sbjct: 237 EIHRYVDAE-LEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNG 295
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
A ELF R + +V +M Y VQ + + A K+ R+M
Sbjct: 296 SLDEARELFERSPVRDIVLWTAMINGY-----VQF-----------NLFDEALKLFRKMQ 339
Query: 361 IE---PDNYVLGALLNACRVHGDVDLGK 385
I+ PDN++L LL C G ++ GK
Sbjct: 340 IQRLRPDNFILVTLLKGCAQTGALEQGK 367
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/428 (36%), Positives = 245/428 (57%), Gaps = 28/428 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA---DTSCLFVGLICHA 112
W T I + + +KA + + QM + PN+ TF +L ACA S + G HA
Sbjct: 59 WTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHA 118
Query: 113 QVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
V +LG + D ++ L+ +YA C ++ AR FD R+++SW ++I+GY ++G+
Sbjct: 119 HVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFE 178
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
A Q+FD +P KNA+SW+A+I G+V+ D +EALE F MQL G P++ ++ + ACA
Sbjct: 179 DALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACA 238
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LG L G W+H V ++ + ++IDMY++CGCI+ A VFD MP R + ++ S
Sbjct: 239 NLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNS 298
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I G A + + A+ F MQ EG P+ E M +
Sbjct: 299 IIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVR 358
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
I P ++HYGCLVDL RAG LE A V++ MP++P+ +LG+LL ACR G++ L +
Sbjct: 359 RILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENV 418
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ L+E + +VLLSNIYA+ +W+G KVRR M++ ++K PG S IE+D + +
Sbjct: 419 MNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSSIHK 478
Query: 448 FVSGERTN 455
FVSG++++
Sbjct: 479 FVSGDKSH 486
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++F L + W +I GF +K+ +A +++M S P+ T ++
Sbjct: 175 GKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVI 234
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L +GL H V+ + + V N L+ +Y+ C C+D AR++FD R ++
Sbjct: 235 AACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLV 294
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G L EAL +FN MQ G
Sbjct: 295 SWNSIIVGFAVNG-------------------------------LADEALSYFNSMQEEG 323
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETA 274
F+P+ GAL AC+ G + +G I ++ R I I ++D+Y++ G +E A
Sbjct: 324 FKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEA 383
Query: 275 CSVFDSMP 282
+V +MP
Sbjct: 384 LNVLKNMP 391
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 58/233 (24%)
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL---GALDQGRWI 242
VSW+ I Y + +A F M+ PNH + L+ACA ++ G I
Sbjct: 57 VSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116
Query: 243 HAYVDRNGIEL-DIILGTAIIDMYAKCGCIET---------------------------- 273
HA+V + G+++ D+++GTA+IDMYAKCG +E+
Sbjct: 117 HAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGK 176
Query: 274 ---ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
A VFD +P ++ ++T+LI G D A+E F MQL GV P+
Sbjct: 177 FEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAA 236
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+ V+ L+D+ R G ++ A++V MP
Sbjct: 237 CANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMP 289
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/476 (35%), Positives = 259/476 (54%), Gaps = 28/476 (5%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
K ++ I H + T DPF +++ +C + I H +LF C Q +++ ++I
Sbjct: 41 KHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYI---DHAIKLFRCTQNPNVYLYTSLI 97
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GF A L+ QM+R L +NY + +L+AC L G H V++ G
Sbjct: 98 DGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLG 157
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ L+ LY C ++ ARK+FD RDV++ T +I G + A ++F++M
Sbjct: 158 LDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEM 217
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
++ V W+ +I+G V+ F LE F MQ+ G PN V L+ACA LGAL+ GR
Sbjct: 218 GTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGR 277
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAY+ + G+E++ + A+I+MY++CG I+ A ++FD + +DV Y S+I GLA H
Sbjct: 278 WIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHG 337
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+S A+ELF M E V PN ESM I+GIEP V+HY
Sbjct: 338 KSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHY 397
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VD+LGR G LE A + M +E D+ +L +LL+AC++H ++ +G++ + L E
Sbjct: 398 GCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYR 457
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
G ++LSN YAS +W+ +VR ME + K PGCS IEV+ + EF SG+
Sbjct: 458 IDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGD 513
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/514 (32%), Positives = 285/514 (55%), Gaps = 77/514 (14%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+KQI + + +G + + + +I S + L + +++F + T F++NT+I
Sbjct: 165 LKQIHTQIITTGLSFQTYCLSHLIKISSKFN---LPYAFKIFNYISNPTIFLYNTLISSL 221
Query: 64 ---AEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRAC-ADTSCLFVGLICHAQVIRLG 118
+N+ AF+LY ++L + L PN++TF + +AC ++ S G + H V++
Sbjct: 222 INQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFL 281
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+D + SL+N YAK G++ ++R +FD
Sbjct: 282 QPPFDNFVQA------------------------------SLLNFYAKYGKMCVSRYIFD 311
Query: 179 KMPEKNAVSWSAMINGYVQ-------------VDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++ E + +W+ ++N Y + D E+L F MQ+ G RPN IV
Sbjct: 312 RINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVA 371
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--N 283
++AC+ LGA+ QG W+H +V RN I+++ +GTA +DMY+KCGC+ AC VFD MP +
Sbjct: 372 LISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPEND 431
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------------- 320
RD F YT++I G A H A+EL+ +M+ +G+VP+
Sbjct: 432 RDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEI 491
Query: 321 -ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+SM E++G+EP ++HYGCL+DLLGRAG L+ A++ + +MP++P+ + +LL A R+HG
Sbjct: 492 FKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHG 551
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
++ +G+ + L+E + G +VLLSN+YAS + N V++VR+ M+ + V K+PG SL+
Sbjct: 552 NLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLV 611
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
E+ G + EF++G+R++ +EI L + I+ L+
Sbjct: 612 EIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLE 645
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 175/503 (34%), Positives = 273/503 (54%), Gaps = 65/503 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++QIKQ+ + + + G L DP A+ +++ + + G ++H Y +F + F++NT+I
Sbjct: 21 LRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLI 80
Query: 61 RGFAEKNEPIKAFALYKQMLR----SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
RG A P A +LY +M R P+ TF F+LRAC G HA V++
Sbjct: 81 RGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVK 140
Query: 117 LGWESYDFVLNGLLHLYATCNCMD-------------------------------PARKL 145
G ES FV N L+ ++A+C + ARKL
Sbjct: 141 AGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKL 200
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
FD +D +SW +I YAK G+++ AR +F+++PE++ VSW+AMI+G+V+ A+
Sbjct: 201 FDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAM 260
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD----RNGIELDIILGTAI 261
E F MQ G +P+ ++ L+ACA G +D GR +H+ + R G +ILG A+
Sbjct: 261 ELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTG--FTVILGNAL 318
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
IDMYAKCG +++A VF M ++DV + S+I GLA H +I++F +M E V P+E
Sbjct: 319 IDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDE 378
Query: 322 S------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
M Y IEP V+HYGC+VD+LGRAG+L+ A + +
Sbjct: 379 ITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFID 438
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
M +EP++ + LL ACRVHG+++L + L++ D G +VLLSNIYAS +W+
Sbjct: 439 TMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLLSNIYASAGEWSE 498
Query: 418 VEKVRRGMEDNEVRKVPGCSLIE 440
EK+R+ M+D+ V K G ++++
Sbjct: 499 SEKMRKLMDDSGVNKQAGRTVVD 521
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 173/457 (37%), Positives = 250/457 (54%), Gaps = 26/457 (5%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADT 101
++F + R W T++ G+A +A+ L+ +M+ PN T + A
Sbjct: 199 KVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQM 258
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
L G++ H V G + N L+ ++ C C+ AR++FD +DV SWTS++
Sbjct: 259 GLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMV 318
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
N YAK G + A Q+F MP +N VSWS MI Y Q++ +EA+ F M G P A
Sbjct: 319 NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378
Query: 222 GIVGALTACAFLGALDQGRWIHA-YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V L+ACA LG LD GRWI+ Y+ N I L + LG A+IDM+AKCG + A +FD
Sbjct: 379 TLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDE 438
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M R+V ++ ++I A H QS AI LF +++ E +VP++
Sbjct: 439 MAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEG 498
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
M Y IEP V+HY C++DLLG+ G+LE A +V R MP+E D GALLNACR
Sbjct: 499 RRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACR 558
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
+HG+V++G + LVE G++VL+S IYAS +W+ V+ +R M D V+K PGC
Sbjct: 559 MHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGC 618
Query: 437 SLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
S IEV+G +F+ + ++ EEI L I HLK
Sbjct: 619 SSIEVEGKFHDFLVADVSHACSEEIYSALKNIYFHLK 655
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/415 (26%), Positives = 184/415 (44%), Gaps = 83/415 (20%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY-RTTFIWNTMI 60
+++ Q+ + LTV+G F +++ FC+ S L+H + ++ TM+
Sbjct: 49 RRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAILARASPGPNAYMLGTMM 108
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA--------------------CAD 100
RGF P +A L+++++R + TF F ++A CA
Sbjct: 109 RGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAA 168
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
C FVG ES V N L+H YA +D A K+FD RDV+SWT+L
Sbjct: 169 LKCGFVG------------ESV-LVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTL 215
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
++GYA++G A ++F +M + + G RPN
Sbjct: 216 VDGYARAGLADEAWRLFCRM------------------------------VVVGGMRPNA 245
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V A++A +G L G +H YV G+ + L A++DM+ KCGC+ A VFD
Sbjct: 246 VTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDG 305
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340
M +DV+++TS+++ A SA +LF M VV + C++
Sbjct: 306 MEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVV----------------SWSCMI 349
Query: 341 DLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+ E A + REM ++P + L ++L+AC G +DLG+ E+ +
Sbjct: 350 AAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYI 404
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 33/249 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL +LF + R W+ MI +++ N+P +A L+++M+ + P + T +L
Sbjct: 325 GDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVL 384
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDV 154
ACA CL +G + I L N L+ ++A C + A KLFD R+V
Sbjct: 385 SACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNV 444
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SW ++I +A GQ A ++F+++ +N V
Sbjct: 445 VSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV---------------------------- 476
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIET 273
P+ +G L +C+ G + +GR ++ IE + +ID+ K G +E
Sbjct: 477 ---PDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEE 533
Query: 274 ACSVFDSMP 282
A V MP
Sbjct: 534 AFEVARGMP 542
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 271/477 (56%), Gaps = 37/477 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+++KQI H G F K++ F + SD L + + LF + + F +NT+I
Sbjct: 17 MREMKQIHGHAITHGLARFAFISSKLLAFYARSD---LRYAHTLFSHIPFPNLFDYNTII 73
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
F+ P + + QML + PN+ TFS +L + + L H+ +IR G
Sbjct: 74 TAFS----PHYSSLFFIQMLNAAVSPNSRTFSLLLSKSSPSLPFLHQL--HSHIIRRGHV 127
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V+ LL Y+ AR+LFD S ++V WTSL+ GY +G ++ AR +FD +
Sbjct: 128 SDFYVITSLLAAYSNHGSTRAARRLFDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAI 187
Query: 181 PEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
PE+ N VS+SAM++GYV+ F+E ++ F ++ +PN++ + L+ACA +GA ++
Sbjct: 188 PERERNDVSYSAMVSGYVKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEE 247
Query: 239 GRWIHAYVDRNGIE--LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G+WIHAYVD+N + ++ LGTA+ID Y KCGC+E A VF +M +DV A+++++ GL
Sbjct: 248 GKWIHAYVDQNKSQCYYELELGTALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGL 307
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A + ++ A+ELF M+ G PN MS+ YGI
Sbjct: 308 AINAKNQEALELFEEMEKVGPRPNAVTFIGVLTACNHKDLFGEALKLFGYMSDKYGIVAS 367
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VD+L R+G +E A + ++ M +EPD + G+LLN C +H +++LG + + LV
Sbjct: 368 IEHYGCVVDVLARSGKIEEALEFIKSMEVEPDGVIWGSLLNGCFLHNNIELGHKVGKYLV 427
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
E H G +VLLSN+YA+ +W V + R+ M+D V V G S IE+ V +F+
Sbjct: 428 ELEPGHGGRYVLLSNVYATMGKWEAVLETRKFMKDRGVPAVSGSSFIEIHQTVHKFL 484
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/502 (31%), Positives = 272/502 (54%), Gaps = 57/502 (11%)
Query: 29 FCSA-SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN 87
F SA S + + + ++ F++N MI+GF + +P++A LY QMLR++ P
Sbjct: 20 FISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPT 79
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT------------ 135
+YTF +++AC S L H V R G++S+ FV L+ Y++
Sbjct: 80 SYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFD 139
Query: 136 -------------------CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
M A +LFDM +R++ +W +LI+GYA+ ++ +A +
Sbjct: 140 EMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELL 199
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F++MP ++ +SW+ MIN Y Q F+EAL FN M G P+ + ++ACA LGAL
Sbjct: 200 FNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGAL 259
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D G+ IH Y+ ++G LD+ +G+A+IDMYAKCG ++ + +F + +++F + S+I GL
Sbjct: 260 DLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGL 319
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
A H + A+ +F +M+ E + PN SM+ + I PG
Sbjct: 320 AVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPG 379
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
V+HYGC+VDLL +AG+LE A +++R M +EP+ + GALL+ C++H ++++ + L+
Sbjct: 380 VEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLM 439
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV-RKVPGCSLIEVDGVVCEFVSG 451
+ G + LL N+ A +W K+R M++ V ++ PG S IE++ V +F +
Sbjct: 440 VLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAAS 499
Query: 452 ERTNVLMEEIVLLLFGIDKHLK 473
++++ +EI LL +D +K
Sbjct: 500 DKSHAASDEIYSLLAELDGQMK 521
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+ + N+D I+ + ++ A + +M N ++AMI G+VQ +A
Sbjct: 5 MVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQA 64
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
LE + M P + AC + L +H +V RNG + + + T+++D
Sbjct: 65 LELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDF 124
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324
Y+ G IE + VFD MP RDVFA+T+++SGL +SA LF M + ++
Sbjct: 125 YSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLI 184
Query: 325 E-------------IYGIEPG--VQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNY 366
+ ++ P + + +++ + A V EM I PD
Sbjct: 185 DGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEV 244
Query: 367 VLGALLNACRVHGDVDLGKE 386
+ +++AC G +DLGKE
Sbjct: 245 TMATVISACAHLGALDLGKE 264
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/458 (37%), Positives = 256/458 (55%), Gaps = 34/458 (7%)
Query: 14 SGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
+G WD + ++ + +G + ++F + R +WN M+R + A
Sbjct: 78 TGFRWDAYTGSSLMEMYTM--LGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAV 135
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF---VLNGLL 130
AL +QM RS P+ T + AC+ L +G H + + + F V N LL
Sbjct: 136 ALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV----FGFNLPVANALL 191
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA 190
+Y +C++ A KLF+ R++ISWT L++GY +GQ+ AR +F++ EK+ + W+A
Sbjct: 192 DMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTA 251
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
MIN VQ F+EAL F MQ+ P+ +V LT CA LGALDQG WIH Y ++
Sbjct: 252 MINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRK 311
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+++D +LGTA+IDMY+KCG IE + VF M RD A+T++I GLA + Q+ A+ELF
Sbjct: 312 MKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQ 371
Query: 311 RMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRA 346
MQ V P+ +M E+Y IEP V+HY CLV+LLGRA
Sbjct: 372 DMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRA 431
Query: 347 GMLEAAKKVVREMPIEPDNYVL-GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405
G+L+ A++++ ++PI D L GALL AC+ HG+V++ + + + E+ V++L+
Sbjct: 432 GLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLM 491
Query: 406 SNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
SN+YA+ +W V +VR M V+K GCSLIEV G
Sbjct: 492 SNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVKG 529
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 155/365 (42%), Gaps = 60/365 (16%)
Query: 40 HGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA 99
HG L+ C N +IR A + + A+Y + + +++T+ F+LRA
Sbjct: 10 HGMPLWEC---------NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVG 60
Query: 100 DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTS 159
G HA ++ G+ + + L+ +Y +D ARK+FD +R ++ W
Sbjct: 61 VLKLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNM 120
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
++ Y + G S A + ++M G P+
Sbjct: 121 MVRCYIRCGWYSAAVALSEQMERS-------------------------------GVTPD 149
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
+V A+TAC+ L GR IH Y+D N ++ + A++DMY K C+E A +F+
Sbjct: 150 RVTLVTAVTACSRARDLSLGRRIHVYMD-NVFGFNLPVANALLDMYTKNDCLEEAVKLFE 208
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339
MP R++ ++T L+SG Q A LF + + + ++ +M I VQH
Sbjct: 209 QMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAM-----INACVQH---- 259
Query: 340 VDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
G E A + R+M +EPD + + LL C G +D G+ + +R +
Sbjct: 260 -------GCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKM 312
Query: 397 DHEGV 401
+ V
Sbjct: 313 KIDAV 317
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 266/462 (57%), Gaps = 32/462 (6%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
C+A DI RLF + N M + + +A + M+ S P+
Sbjct: 283 CNAIDIAK-----RLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRI 337
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
+ + +C+ + G CH V+R G+ES+D + N L+ +Y C+ D A ++FD
Sbjct: 338 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 397
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
N+ V++W S++ GY ++G++ A + F+ MPEKN VSW+ +I+ VQ ++++EA+E F+
Sbjct: 398 SNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFH 457
Query: 210 YMQL--CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
YMQ C + ++ +AC LGALD +WI+ Y+++N I+LD+ LGT ++DM+++
Sbjct: 458 YMQSQEC-VNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSR 516
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
CG E+A S+F+S+ NRDV A+T+ I +A AIELF M +G+ P+
Sbjct: 517 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGA 576
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
SM +++G+ P HYGC+VDLLGRAG+LE A +++++MP EP
Sbjct: 577 LTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEP 636
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
++ + +LL ACRV G+V++ E + + + G +VLLSN+YAS +WN + KVR
Sbjct: 637 NDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRL 696
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
M++ +RK PG S+I++ G EF SG+ ++ M +I +L
Sbjct: 697 SMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAML 738
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 196/462 (42%), Gaps = 93/462 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQ-YRTTFIWNT 58
+ ++K LT G D A+ K++ C LS +F + Y T F++N+
Sbjct: 44 IDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNS 103
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IRG+A +A L+ +M+ S P+ YTF F L CA + G+ H +I++
Sbjct: 104 LIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMD 163
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF- 177
+ FV N L+H YA C +D ARK+FD R+V+SWTS+I GYA+ A +F
Sbjct: 164 YAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFF 223
Query: 178 ------DKMP---------------------------------EKNAVSWSAMINGYVQ- 197
D +P E N + SA+++ Y++
Sbjct: 224 RMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKC 283
Query: 198 --VDLFKEALEHF----------------------------NYMQLCGFRPNHAGIVGAL 227
+D+ K + + N M G RP+ ++ A+
Sbjct: 284 NAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAI 343
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
++C+ L + G+ H YV RNG E + A+IDMY KC +TA +FD M N+ V
Sbjct: 344 SSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVV 403
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
+ S+++G + + +A E F M + +V + ++ L +
Sbjct: 404 TWNSIVAGYIENGEVDAAWETFNTMPEKNIVS----------------WNTIISALVQEN 447
Query: 348 MLEAAKKVVREMP----IEPDNYVLGALLNACRVHGDVDLGK 385
M E A +V M + D + ++ +AC G +DL K
Sbjct: 448 MYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAK 489
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 251/456 (55%), Gaps = 30/456 (6%)
Query: 14 SGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
+G WD + ++ + +G L ++F + R +WN M+R + +A
Sbjct: 75 TGFRWDAYTASSLMDMYTM--LGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAV 132
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLLHL 132
AL ++M R P+ T L AC+ L +G HA + G + V N LL +
Sbjct: 133 ALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMD--GVTGFSLPVANALLDM 190
Query: 133 YATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI 192
Y C++ A LF+ +R+V+SWT+L++GYA +GQ+ AR +F + EK+ + W+AMI
Sbjct: 191 YVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMI 250
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252
N YVQ F EAL F MQ+ P+ +V LT CA LGALDQG+ IH + + ++
Sbjct: 251 NAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMK 310
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312
LD +LGTA+IDMYAKCG +E + VF+ M RD A+T++I GLA + Q+ A+ELF M
Sbjct: 311 LDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDM 370
Query: 313 QLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+ P+ +M E+Y I P V+HY CLV+LLGRAG
Sbjct: 371 ERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQ 430
Query: 349 LEAAKKVVREMPIEPDNYVL-GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
L+ A+K+++ +PI D L GAL+ AC+ G+V + + + + ++ V++L+SN
Sbjct: 431 LDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLMSN 490
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+YA+ +W V +VR M V+K GCSLIEV G
Sbjct: 491 VYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 150/333 (45%), Gaps = 53/333 (15%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
N +IR A ++ A+Y + + +++T+ F+LRA G HA ++
Sbjct: 15 NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLK 74
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ + + L+ +Y ++ ARK+FD R V+ W ++ Y + G+ +
Sbjct: 75 TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNT----- 129
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
EA+ M+ P+ ++ ALTAC+ G L
Sbjct: 130 --------------------------EAVALAEEMERGRLTPDRVTLLTALTACSRAGDL 163
Query: 237 DQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
GR IHAY+D G L + A++DMY K GC+E A ++F+ MP+R+V ++T+L+SG
Sbjct: 164 SLGRKIHAYMDGVTGFSLPV--ANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSG 221
Query: 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
A Q A LF + + ++ +M Y VQH GC ++ L +
Sbjct: 222 YAFAGQVDKARLLFHQCTEKDLIMWTAMINAY-----VQH-GCFIEALS----------L 265
Query: 356 VREM---PIEPDNYVLGALLNACRVHGDVDLGK 385
R+M IEPD + + LL C G +D G+
Sbjct: 266 FRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQ 298
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/492 (34%), Positives = 274/492 (55%), Gaps = 33/492 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI ++ +G F + K++ + DL + LF + + +++N I
Sbjct: 1 MNQLKQIHAYSLRNGLDHTKFLIEKLL------QLPDLPYACTLFDQIPKPSVYLYNKFI 54
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F+ P + + LY QM PN Y+F+F+ ACA ++ G + H+ + G+
Sbjct: 55 QTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFA 114
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F + LL +YA + AR+LFD RD+ +W SLI GYA+SG + A ++F+KM
Sbjct: 115 SDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKM 174
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-LCGFRPNHAGIVGALTACAFLGALDQG 239
P +N +SW+A+I+GY Q + +ALE F ++ G +PN I L AC+ LGALD G
Sbjct: 175 PVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIG 234
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLAN 298
+ I AY NG + + A+++++A+CG IE A VFD + R++ ++ ++I GLA
Sbjct: 235 KRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAV 294
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + A++L+ +M + + P+ ESM + + P ++
Sbjct: 295 HGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLE 354
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGCLVDLLGRAG L+ A +++ MP+ PD+ + G LL AC HG+V+LG+ ESL +
Sbjct: 355 HYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKL 414
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER- 453
+ G +V+LSNIYA W+GV ++R+ M+ + K G S IEV + EF+ +R
Sbjct: 415 EPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRI 474
Query: 454 TNVLMEEIVLLL 465
T+ ++ +LLL
Sbjct: 475 TSRCVQPFLLLL 486
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 256/466 (54%), Gaps = 55/466 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI + + VS + D +A +++ FC+ S+ GDLS+ RLF Q +F+WNT+I
Sbjct: 39 MHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLI 98
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A P +A LY M R D +P +TF F+L+AC++ L + H V++ G +
Sbjct: 99 RAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLD 158
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V+NGL + Y+ S + AR++FD++
Sbjct: 159 LNLHVVNGL-------------------------------VRAYSVSCDVRNARRVFDEV 187
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E++ W+ MI+GY Q EALE F+ M + G PN A + L+ACA G LD G
Sbjct: 188 SERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGE 247
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH +++ GIE+ +ILGTA++ MYAK G I A +FD++ R+ + ++I GLA H
Sbjct: 248 RIHVFMEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHG 307
Query: 301 QSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHY 336
+ A++ F +++ E +VPN+ M +YGIEP ++HY
Sbjct: 308 HAKEALDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHY 367
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGR G L A+++++ M + D +LGALL +C+ HG++++ + V+ ++
Sbjct: 368 GCMVDLLGRGGELLEAEELIKGMAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEP 427
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+ GV+V+LSN+YA +W V ++R+ M+ ++K PG SL++ D
Sbjct: 428 HNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVDSD 473
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 264/481 (54%), Gaps = 57/481 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+ +Q++ G + D F + +I ++ GD++ +F + +WN ++ +
Sbjct: 140 RGVQAYAVKRGLVADRFVLSSLIHMYAS--CGDVAAARLVFDAAEESGVVMWNAIVAAYL 197
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + ++ ++K ML + T ++ AC G I A++ + W +
Sbjct: 198 KNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTAC--------GRIGDAKLGK--WVAGHV 247
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
GL R+ T+L++ YAK G+I AR++FD M ++
Sbjct: 248 DEEGL---------------------ARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRD 286
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+WSAMI+GY Q D +EAL F+ MQL PN +V L+ACA LGAL+ G+W+H+
Sbjct: 287 VVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHS 346
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
YV R + L ILGTA++D YAKCGCI+ A F+SMP ++ + +T+LI G+A + +
Sbjct: 347 YVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGRE 406
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ELF M+ G+ P +SM+ YGI+P V+HYGC+V
Sbjct: 407 ALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMV 466
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG+++ A + +R MPIEP+ + ALL++C VH +V +G+E ++ ++ + H G
Sbjct: 467 DLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSG 526
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
+VLLSNIYAS QW VR+ M+D + K PGCSLIE+DGVV EF + + + + E
Sbjct: 527 DYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELRE 586
Query: 461 I 461
I
Sbjct: 587 I 587
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 164/363 (45%), Gaps = 60/363 (16%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCLFVGLI 109
+T +N ++R F P A L+ +ML S + +T + L++C+ L VG
Sbjct: 82 STPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRG 141
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
A ++ G + FVL+ L+H+Y A G
Sbjct: 142 VQAYAVKRGLVADRFVLSSLIHMY-------------------------------ASCGD 170
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
++ AR +FD E V W+A++ Y++ + E +E F M G + +V +TA
Sbjct: 171 VAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTA 230
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
C +G G+W+ +VD G+ + L TA++DMYAKCG I A +FD M +RDV A+
Sbjct: 231 CGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAW 290
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE-------SMSEIYG-IEPG--VQHY--- 336
+++ISG DQ A+ LF MQL V PN+ S + G +E G V Y
Sbjct: 291 SAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRR 350
Query: 337 ----------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
LVD + G ++ A + MP++ +++ AL+ +G G+E
Sbjct: 351 KRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGR---GRE 406
Query: 387 TVE 389
+E
Sbjct: 407 ALE 409
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 173/494 (35%), Positives = 261/494 (52%), Gaps = 55/494 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +KQI +L V G + +++ C AS G + + ++F + + F+ N M+R
Sbjct: 11 RSLKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNVMVR 70
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G+A P AF LY+++ + P+++TF ++LRACA G H V++LG+
Sbjct: 71 GYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGYFK 130
Query: 122 YDFVLNGLLHLYATCNCM-------------------------------DPARKLFDMSV 150
FV N L++++A C + D AR+LFD
Sbjct: 131 DAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDECQ 190
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
++D++ W ++ YAK G++ AR + D+ PEK+ VSW+ +I GY L KEALE +
Sbjct: 191 HKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDE 250
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M+ G P+ A IV L+ CA LG+L GR IH+ + I+ G A++ MYAKCG
Sbjct: 251 MRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGD 310
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-------- 322
++ A VF M RDV+ + S+I GLA H Q+ +++ F +M EG+ PNE
Sbjct: 311 VQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVLGA 370
Query: 323 ----------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
M Y IEP +HY C+VD+LGR+G+L+ A +V M EP
Sbjct: 371 CSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAIVSSMRCEPAVV 430
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ LL ACR+HGDV LGK E L++ + D G +VLLS IYAS ++W GVE VR M+
Sbjct: 431 IWRTLLGACRIHGDVALGKLARERLLKMNEDASGDYVLLSGIYASCDEWFGVETVRGSMD 490
Query: 427 DNEVRKVPGCSLIE 440
+ +RKV G + +E
Sbjct: 491 ERGIRKVAGYAQVE 504
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 258/468 (55%), Gaps = 30/468 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ K I +H + +GK+ F + S GDLS+ + +F + TTF +NT+I
Sbjct: 20 MRNFKLIHAHAFRTCLHQHAVVLGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFFYNTLI 79
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + P + + +M R+ P+ ++F+F+L++ + T L + H V + G+
Sbjct: 80 RAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLLKSRSFTMPLVHDI--HGAVFKFGFC 137
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSV----NRDVISWTSLINGYAKSGQISIARQM 176
+ V N L+HLYA ARK+F+ +V + D++SW+ L+ +AK+G++ +AR++
Sbjct: 138 RHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELDVARKV 197
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD MPE++ VSW+ M++ Y + E L+ F M+L G P+ ++ ++ACA LG
Sbjct: 198 FDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTVLSVISACAELGDA 257
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ GR +H +V+ NG + L ++IDMY KCGC+E A VFD + + + +++
Sbjct: 258 EMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSLITWNAMMMVC 317
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
ANH + A LF M GVVP+ ESM YG+EP
Sbjct: 318 ANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRLFESMQRDYGVEPR 377
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYG +VD+LGR+G L+ A ++ MPI ++ + GALL ACR+HGDV +G+ ++ L+
Sbjct: 378 IEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVIWGALLGACRIHGDVGMGERVIKKLL 437
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
E D G ++LL +IY + + ++R+ M + RK PGCS +E
Sbjct: 438 ELKPDEGGYYILLRDIYVAAGRTAEANEMRQAMLASGARKNPGCSWVE 485
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 255/466 (54%), Gaps = 55/466 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQI + + VS + D +A +++ FC+ S+ GDLS+ RLF Q +F+WNT+I
Sbjct: 41 MHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLI 100
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A P +A LY M R D +P +TF F+L+AC++ L + H V++ G +
Sbjct: 101 RAHASSLNPSEALLLYVDMRRLDVIPGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLD 160
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V+NGL + Y+ S + AR++FD++
Sbjct: 161 LNLHVVNGL-------------------------------VRAYSVSCDVRNARRVFDEV 189
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E++ W+ MI+GY Q EALE F+ M + G PN A + L+ACA G LD G
Sbjct: 190 SERSLSIWTTMISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGE 249
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH +++ GIE+ +ILGTA++ MYAK G I A +FD + R+ + ++I GLA H
Sbjct: 250 RIHVFMEEKGIEVGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHG 309
Query: 301 QSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHY 336
+ A++ F +++ E +VPN+ M +YGIEP ++HY
Sbjct: 310 HAKEALDRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHY 369
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGR G L A+++++ M + D +LGALL +C+ HG++++ + V+ ++
Sbjct: 370 GCMVDLLGRGGELLEAEELIKGMAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEP 429
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+ GV+V+LSN+YA +W V ++R+ M+ ++K PG SL++ D
Sbjct: 430 HNHGVYVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVDSD 475
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/497 (34%), Positives = 266/497 (53%), Gaps = 63/497 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+Q K I + V+G + +A+ K+I FC+ S+ G LS+ +F +Q F +NT+I
Sbjct: 17 MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R ++ + P A ++ ML + + P+ +TF FI+ AC ++ + +G H V++ G
Sbjct: 77 RAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV 136
Query: 120 ESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
S D V L+ YA C M A R++FD
Sbjct: 137 ASSDRHVQTALVRFYAECCAMGDA-------------------------------RKLFD 165
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
++P + V W+ ++NGYV+ L EAL F M + G P+ + AL CA LGAL Q
Sbjct: 166 EIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQ 225
Query: 239 GRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WIH YV R +E D+ +GTA++DMYAKCGCI+ + VF+ M R+VF+++++I G A
Sbjct: 226 GKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFA 285
Query: 298 NHDQSASAIELFMRMQLE-GVVPN------------------------ESMSEIYGIEPG 332
H A++ RMQ+E G+ P+ E+M YGI P
Sbjct: 286 LHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPK 345
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+HY C+VDLL RAG L+ A K++R MP++P V GALL+ CR H +VDL + L+
Sbjct: 346 HEHYSCMVDLLCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELL 405
Query: 393 E----RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ +G +V LSNIY + ++ ++RR + D ++ PGCSLIEV+G V +F
Sbjct: 406 MVGNGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQF 465
Query: 449 VSGERTNVLMEEIVLLL 465
VSG+ ++ + +I +L
Sbjct: 466 VSGDISHPCLAQIHEML 482
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 170/498 (34%), Positives = 262/498 (52%), Gaps = 60/498 (12%)
Query: 2 KQIKQIQSHLTVSGTLWDPFA-VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ ++QI HL V G + +++ C A+ G + + ++F + F+ N M+
Sbjct: 12 RAVRQIHGHLVVGGIAAARLQHLRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMV 71
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG+A P AFA+Y++M + L P+ +TF ++LRACA G H V++LG+
Sbjct: 72 RGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGF 131
Query: 120 ESYDFVLNGLLHLYATCNC-------------------------------MDPARKLFDM 148
+V N L++++A C M ARK+FD
Sbjct: 132 LKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDE 191
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++D++ W ++ YAK G++ AR++FD+ PEK+ VSW+ +I GY + K ALE F
Sbjct: 192 CTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVF 251
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA--YVDRNGIELDIILGTAIIDMYA 266
+ M+ G+ P+ A IV L+ CA G LD GR IH +++R + I++G A++ MYA
Sbjct: 252 DEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPW-ISIVVGNALVSMYA 310
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---- 322
KCG + TA F++M + DV+ + S+I GLA H Q+ ++ F +M + + PNE
Sbjct: 311 KCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLC 370
Query: 323 --------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
M + YGIEP +HY C+VD+LGRAG+L+ A +V M E
Sbjct: 371 VLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIVSNMRCE 430
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
P V LL ACR HG++ LGK E L+ + D +VLLS IYAS+ +W GVE R
Sbjct: 431 PSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASSGEWLGVETER 490
Query: 423 RGMEDNEVRKVPGCSLIE 440
R M+ +RK G + I+
Sbjct: 491 RSMDRRGIRKAAGYAQID 508
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 262/481 (54%), Gaps = 58/481 (12%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI +H +G + F ++ F + S G + ++F + W T+I+ +++
Sbjct: 159 QIHAHSIKTGLSSNLFVKNTLMRFYAVS--GFIEAVEKVFDQGPHWDLISWTTLIQAYSK 216
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
P +A A + R + + T +L AC+ +LG DF
Sbjct: 217 MGYPSEAIAAF---FRMNCTADRMTLVVVLSACS----------------QLG----DFT 253
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
L + Y MD LFD V+ DV +L++ Y K GQ +ARQ+F MP KN
Sbjct: 254 LGKKILAY-----MD--HHLFD--VHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNL 304
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
VSW++MI+G LFKEAL F MQ G +P+ +VG L +CA LG L+ G+W+H+Y
Sbjct: 305 VSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSY 364
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
+D+N ++ D + A++DMYAKCG I+ A VF +M +DV++YT++I G A H ++ A
Sbjct: 365 IDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRA 424
Query: 306 IELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVD 341
+ +F M GV P+ + MS +Y ++P +HYGC+VD
Sbjct: 425 LAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVD 484
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG++ A+ +MPI PD V G+LL AC++H V+LG+ ++ L+E + +G
Sbjct: 485 LLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGA 544
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
++L+SNIY+S +W K R+ M+ N ++K PGCS IEVDG+V EF GE+++ E+
Sbjct: 545 YILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREM 604
Query: 462 V 462
+
Sbjct: 605 I 605
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/465 (26%), Positives = 198/465 (42%), Gaps = 76/465 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS------------ASDIGDLSHGYRLFVCL 48
+++IKQI + + + T + II C+ A I +L + L
Sbjct: 39 VREIKQIHASIIKANTTRSTTTL-PIISLCTKITSLLQQDVHLADSIQNLWYASSLANFC 97
Query: 49 QYRTTFIWNTMIRGFAEKNEPIK-AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
+I+N +I+ + N F+LY+QML P+ YT ++L+AC+ +
Sbjct: 98 HQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEA 157
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
L HA I+ G S FV N L+ YA ++ K+FD + D+ISWT+LI Y+K
Sbjct: 158 LQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKM 217
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G S EA+ F M R +V L
Sbjct: 218 GYPS-------------------------------EAIAAFFRMNCTADR---MTLVVVL 243
Query: 228 TACAFLGALDQGRWIHAYVDRN--GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
+AC+ LG G+ I AY+D + + D+ LG A++DMY KCG A +F MP ++
Sbjct: 244 SACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKN 303
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG--VQH 335
+ ++ S+ISGLA+ A+ +F RMQ G+ P+ S + + +E G V
Sbjct: 304 LVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHS 363
Query: 336 Y-------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
Y LVD+ + G ++ A V + M + D Y A++ +HG D
Sbjct: 364 YIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCK-DVYSYTAMIVGFAMHGKAD 422
Query: 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
+ + + HV L + ++ +E+ RR +D
Sbjct: 423 RALAIFSEMPRMGVRPD--HVTLVGVLSACSHAGLLEEGRRHFQD 465
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 178/549 (32%), Positives = 284/549 (51%), Gaps = 91/549 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +KQIQ+ + +G + K + C+ IG+L + R+F + FI+N +I
Sbjct: 45 MQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVI 104
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ F + KA L++Q+ P+N+T+ F+ +A + G + V++ G E
Sbjct: 105 KAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLE 164
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS------------------------ 156
+V N L+ +YA + R++F+ RDV+S
Sbjct: 165 FDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQI 224
Query: 157 -----------WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
WTS+++GY GQ+ AR++F++ P ++ V W+AMINGYVQ + F +A+
Sbjct: 225 FNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAV 284
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
F MQ+ P+ +V LT D ++GTA+I+MY
Sbjct: 285 ALFREMQIKRVSPDRFTLVALLT-------------------------DAVVGTALIEMY 319
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---- 321
AKCG IE + +F+ + +D ++TS+I GLA + +++ A+ELF M GV P++
Sbjct: 320 AKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFI 379
Query: 322 --------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
SM+ +Y IEP ++HYGCL+DLLGRAG L+ A++++ + P
Sbjct: 380 GVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPN 439
Query: 362 EPDNYVL---GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
+ ++ GALL+ACR HG+V++G+ + LV VH LL+NIYAS ++W V
Sbjct: 440 VNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDV 499
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
KVRR M+D V+KVPGCS +EV+G+V EF+ G+ ++ M EI +L I K L L
Sbjct: 500 TKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPLLGL--- 556
Query: 479 DDGNEVATE 487
D NE+ E
Sbjct: 557 -DENEMEGE 564
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 163/410 (39%), Positives = 235/410 (57%), Gaps = 30/410 (7%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLLHLYATCNCMDPARK 144
P++ TF F+ RA A + + L H+ +RLG D + N +H+YA C D AR+
Sbjct: 58 PSHLTFPFLGRAAARLASPRLALSLHSHPLRLGLLPCDLHIANSFVHMYAACALPDLARR 117
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
LFD + +SW +L++GYAK +S AR++FD+MP ++ VSWSAMI+G V+ ++EA
Sbjct: 118 LFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREA 177
Query: 205 LEHFNYMQLC----GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
L F M+ G R N ++ L ACA LG L +GR +H Y+ G L++ L T+
Sbjct: 178 LALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLATS 237
Query: 261 IIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
++DMYAKCG I A VF ++P + DV + ++I GLA H +ELF MQ GVV
Sbjct: 238 LVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVV 297
Query: 319 PNESMS-----------------------EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
P+E E G+ P V+HY CLVD+L RAG LE A V
Sbjct: 298 PDEITYLGLLSACVHGGLVDEAWRFFCSLEAQGLRPHVEHYACLVDVLSRAGRLEEAYGV 357
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
V+ MP+EP VLGA+LNAC +HG V+LG+ LV DH+G ++ LSNIYA ++W
Sbjct: 358 VKSMPMEPSVSVLGAILNACHLHGWVELGEVVGRQLVRLQPDHDGRYIGLSNIYAVAKRW 417
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
+K R+ M + ++K+PG S I+V G C F++ ++T+ +I LL
Sbjct: 418 QEAKKARKVMSERGLKKIPGFSEIDVGGRPCRFIAQDKTHSGSTDIYALL 467
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 37/252 (14%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS----DFLPNNYTFS 92
DLS +F + +R W+ MI G + E +A AL++ M + N+ T
Sbjct: 142 DLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALALFEMMEAAATGHGVRANDVTMI 201
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L ACA L G H + G F+LN L
Sbjct: 202 SMLGACAHLGDLRRGRQMHRYLQERG-----FLLNLRLA--------------------- 235
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNY 210
TSL++ YAK G IS A ++F +P + + W+AMI G + E +E F
Sbjct: 236 -----TSLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQE 290
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
MQ G P+ +G L+AC G +D+ ++ G+ + ++D+ ++ G
Sbjct: 291 MQHSGVVPDEITYLGLLSACVHGGLVDEAWRFFCSLEAQGLRPHVEHYACLVDVLSRAGR 350
Query: 271 IETACSVFDSMP 282
+E A V SMP
Sbjct: 351 LEEAYGVVKSMP 362
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/506 (32%), Positives = 265/506 (52%), Gaps = 33/506 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++I SH++ G D +I +C + + + +F + R W+ MI G+
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQE---AREIFDRMSKRDVISWSAMIAGY 334
Query: 64 AE-----KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
A+ K + F L ++M R PN TF ILRAC L G HA++ ++G
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVG 394
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+E + + ++YA C + A ++F N++V++WTS ++ Y K G +S A ++F
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFS 454
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP +N VSW+ MI GY Q + E + M+ GF+P+ ++ L AC L L++
Sbjct: 455 EMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER 514
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+ +HA + G+E D ++ T++I MY+KCG + A +VFD M NRD A+ ++++G
Sbjct: 515 GKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQ 574
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H A++LF RM E V PNE M E + + P Q
Sbjct: 575 HGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQ 634
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGRAG L+ A++ ++ MP EPD V ALL AC+ H +V L + ++E
Sbjct: 635 HYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILEL 694
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ V++ LSNIYA +W+ KVRR M+D ++K G S IE+DG + FV+ +
Sbjct: 695 EPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCA 754
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDD 480
+ ++ I L + K +K + D
Sbjct: 755 HPEIDAIHAELETLTKEMKEAGYTPD 780
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 156/322 (48%), Gaps = 38/322 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K + L G D + +I F S + D++ ++F + R W++MI +A
Sbjct: 76 KMVHKQLDELGVEIDIYLGNSLINFYSKFE--DVASAEQVFRRMTLRDVVTWSSMIAAYA 133
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
N P KAF +++M ++ PN TF IL+AC + S L G H V +G E+
Sbjct: 134 GNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMET--- 190
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
DV T+LI Y+K G+IS+A ++F KM E+N
Sbjct: 191 ----------------------------DVAVATALITMYSKCGEISVACEVFHKMTERN 222
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+A+I Q EA E + M G PN V L +C AL++GR IH+
Sbjct: 223 VVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS 282
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA-----NH 299
++ G+E D+I+ A+I MY KC ++ A +FD M RDV +++++I+G A +
Sbjct: 283 HISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDK 342
Query: 300 DQSASAIELFMRMQLEGVVPNE 321
+ +L RM+ EGV PN+
Sbjct: 343 ESIDEVFQLLERMRREGVFPNK 364
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 165/369 (44%), Gaps = 39/369 (10%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G++S +F + R W +I+ A+ + +AF LY+QML++ PN TF
Sbjct: 203 SKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFV 262
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L +C L G H+ + G E+ V N L+ +Y CN + AR++FD R
Sbjct: 263 SLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKR 322
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DVISW+++I GYA+S GY + E + M+
Sbjct: 323 DVISWSAMIAGYAQS--------------------------GYKDKESIDEVFQLLERMR 356
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G PN + L AC GAL+QGR IHA + + G ELD L TAI +MYAKCG I
Sbjct: 357 REGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIY 416
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332
A VF M N++V A+TS +S +SA ++F M VV M G
Sbjct: 417 EAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMI------AG 470
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
G +V + ++A +PD + +L AC ++ GK V
Sbjct: 471 YAQNGDIVKVFELLSSMKAE-------GFQPDRVTVITILEACGALAGLERGKLVHAEAV 523
Query: 393 ERSLDHEGV 401
+ L+ + V
Sbjct: 524 KLGLESDTV 532
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 115/253 (45%), Gaps = 34/253 (13%)
Query: 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
E I+ + KQ L N+ T+ ++ CA G + H Q+ LG E ++ N
Sbjct: 39 EAIQLLGIIKQ---RGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGN 95
Query: 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
L++ Y+ + A ++F RDV++W+S+I YA + + A F++M + N
Sbjct: 96 SLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN--- 152
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
PN + L AC L++GR IH V
Sbjct: 153 ----------------------------IEPNRITFLSILKACNNYSILEKGRKIHTIVK 184
Query: 248 RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIE 307
G+E D+ + TA+I MY+KCG I AC VF M R+V ++T++I A H + A E
Sbjct: 185 AMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFE 244
Query: 308 LFMRMQLEGVVPN 320
L+ +M G+ PN
Sbjct: 245 LYEQMLQAGISPN 257
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
+EA++ ++ G N + CA + G+ +H +D G+E+DI LG +
Sbjct: 37 LREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNS 96
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+I+ Y+K + +A VF M RDV ++S+I+ A ++ A A + F RM + PN
Sbjct: 97 LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPN 156
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK---VVREMPIEPDNYVLGALLNACRV 377
I +Y +LE +K +V+ M +E D V AL+
Sbjct: 157 RIT--FLSILKACNNY----------SILEKGRKIHTIVKAMGMETDVAVATALITMYSK 204
Query: 378 HGDVDLGKETVESLVERSL 396
G++ + E + ER++
Sbjct: 205 CGEISVACEVFHKMTERNV 223
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/454 (37%), Positives = 256/454 (56%), Gaps = 26/454 (5%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ G L ++F + W TMI G+A N +A AL+ ML SD PN T
Sbjct: 199 ETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIA 258
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L AC+ +G H + R +LN +L +Y C C+ AR++F+ RD
Sbjct: 259 LLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRD 318
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF-NYMQ 212
V SWTSL+NGYAK+G + AR++FD+MPE+N VSW+AMI GY Q EALE F N +
Sbjct: 319 VFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVD 378
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHA-YVDRNGIELDIILGTAIIDMYAKCGCI 271
+ G P +V L+A LG L+ G+ IH +V++ GI++ +IL A++DMYAKCG I
Sbjct: 379 VVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSI 438
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
+ A +F SMP +++ ++ S+IS A++ + A+ LF +M G+ P+
Sbjct: 439 DAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSAC 498
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
ESM +G+EP +HY C+VDLL R G+L+ A +++ MP+E
Sbjct: 499 SYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGG 558
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
GALL+ACR HG+V++ K E L+E + G++ LL+NI A ++W V VRR M +
Sbjct: 559 WGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRE 618
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
V+KVPG SLIE++G EF+ + ++ EI
Sbjct: 619 RGVKKVPGHSLIEIEGKFHEFLVADTSHTRSSEI 652
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 215/420 (51%), Gaps = 55/420 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M Q+KQIQ+H+T +G + F +++ FC+ SD GD+ + + +F + F WNTMI
Sbjct: 65 MFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMI 124
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G+ + N P F+ ++QM+R+ ++ +F F L+AC + VG+ H+ + + G++
Sbjct: 125 KGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFD 184
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV NGL+ Y C+ AR++FD S +DV++WT++INGYA++
Sbjct: 185 SDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARN------------- 231
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+W EA+ FN M +PN ++ L+AC+ G + G+
Sbjct: 232 ------NW------------LDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGK 273
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H ++ R I + L A++DMY KCGC+ TA +F++M RDVF++TSL++G A +
Sbjct: 274 TLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNG 333
Query: 301 QSASAIELFMRMQLEGVV--------------PNES------MSEIYGIEPGVQHYGCLV 340
SA +LF M +V P E+ M ++ G+ P C++
Sbjct: 334 DLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVL 393
Query: 341 DLLGRAGMLEAAKKV----VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
G+ G LE +++ V ++ I+ + A+++ G +D + S+ E++L
Sbjct: 394 SASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNL 453
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 256/441 (58%), Gaps = 55/441 (12%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
N+MIR + + N+ + + +Y QM ++ P++ TF +L++ A +G H +I+
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
+G+ES +V L+++Y TC+ + AR++FD +R+++SW +LI GY + +M
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHN-------RM 223
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F K+ +D+F+E MQ+ G +P +VG L ACA LGAL
Sbjct: 224 FRKV-----------------IDVFRE-------MQIAGAKPVEVTMVGVLLACAHLGAL 259
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+QGRWI Y+D N + L++ +GTA+IDMYAKCG ++ A +F +M ++V+ + LISG
Sbjct: 260 NQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGY 319
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A + + SA++ F RM +E P+E SM E +G+ P
Sbjct: 320 AMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPR 379
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLLGRAG L+ A+++++ M ++PD + LL ACR+HG++ LG+ ++ L+
Sbjct: 380 IEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLL 439
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E ++ +VLL+N+YA ++W+ V +VR M+ VRKVPGCS IE+D VV EFV
Sbjct: 440 ELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSN 499
Query: 453 RTNVLMEEIVLLLFGIDKHLK 473
EE+ LL ++K LK
Sbjct: 500 YIKPGFEEVYKLLADMNKKLK 520
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 10/153 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ + + WN +I G+A A + +M+ F P+ TF +L
Sbjct: 292 GVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVL 351
Query: 96 RACADTSCLFVGLICHAQV-----IRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MS 149
AC + G + +R E Y +++ L +D A++L MS
Sbjct: 352 CACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVD----LLGRAGFLDEAQQLIQAMS 407
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ D I W L+ G I + K+ E
Sbjct: 408 MQPDPIIWRELLGACRIHGNIQLGEFAIKKLLE 440
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/506 (32%), Positives = 270/506 (53%), Gaps = 57/506 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QIKQ+ + +T +G + D K++ C+ DL + LF ++ R W+ MI G
Sbjct: 18 QIKQVHAQVTTTGIIHDLIVANKLLYMCAKHK--DLVTAHLLFNKMEERDPVSWSVMIGG 75
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F + + + F +++++R+ P+N++ F+++AC DT L +G + H+ V++ G
Sbjct: 76 FVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNG---- 131
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
LHL D ++L++ YAK G I A+Q+FD+MP+
Sbjct: 132 -------LHL--------------------DNFVCSTLVDMYAKCGMIDNAKQLFDRMPK 164
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ V+ + MI GY + E+ F+ M+ GF P+ +V + ACA LGA+++ R +
Sbjct: 165 KDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLV 224
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H YV LD+ LGTA+IDMYAKCG I+++ +FD M ++V +++++I H Q
Sbjct: 225 HDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQG 284
Query: 303 ASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGC 338
A+ELF M G++PN MS YG+ P V+HY C
Sbjct: 285 REALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTC 344
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG L+ A +++ M +E D + A L ACR+H VDL ++ + L+ +
Sbjct: 345 MVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQN 404
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G ++LLSNIYA+ +W V K+R M ++K+PG + IEVD ++ F +G+ +++
Sbjct: 405 PGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRS 464
Query: 459 EEIVLLLFGIDKHLKSLCFFDDGNEV 484
EI +L + + L+S + D N V
Sbjct: 465 NEIYEMLKSLSQKLESAGYVPDTNSV 490
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/499 (34%), Positives = 267/499 (53%), Gaps = 32/499 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++KQIQ++ +G + ++ I + + ++LF + T F++N +I
Sbjct: 1 MNRLKQIQAYTLRNGIEHTKQLIVSLL------QIPSIPYAHKLFDFIPKPTVFLYNKLI 54
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ ++ + F+LY QM PN ++F+F+ ACA S G + H ++ G+
Sbjct: 55 QAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFG 114
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
F L L+ +YA + ARK FD RDV +W S+I GYA+ G + A ++F M
Sbjct: 115 CDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLM 174
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQG 239
P +N SW+AMI+GY Q + +AL F M+ RPN + L ACA LGAL+ G
Sbjct: 175 PARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVG 234
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLAN 298
I Y NG ++ + A+++MYA+CG I+ A VF+ + R++ ++ S+I GLA
Sbjct: 235 ERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAV 294
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + AIELF +M EG P+ ESM + I P ++
Sbjct: 295 HGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLE 354
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGRAG L A ++ MP+EPD+ V G LL AC HG V+L ++ +L E
Sbjct: 355 HYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFEL 414
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +V+LSNIYA+ +W+GV ++R+ M+ ++ K G S IE G + +F+ +R+
Sbjct: 415 EPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHIHKFIVEDRS 474
Query: 455 NVLMEEIVLLLFGIDKHLK 473
+ +EI LL + +K
Sbjct: 475 HSRSDEIYALLDEVSMKMK 493
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 168/489 (34%), Positives = 264/489 (53%), Gaps = 61/489 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+ I + L +G DPF V +++ CS D + R+F +++ +I
Sbjct: 52 INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAID--YASRIFQYTHNPNVYLYTALI 109
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GF ++A LY +ML LP+NY + IL+AC L G H++ ++LG+
Sbjct: 110 DGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFS 169
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S V ++ LY C G++ AR++F++M
Sbjct: 170 SNRLVRLRIMELYGKC-------------------------------GELGDARRVFEEM 198
Query: 181 PE----KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
PE K+ V W+AMI+G+V+ + ALE F MQ RPN IV L+AC+ LGAL
Sbjct: 199 PEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGAL 258
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ GRW+H+Y+ + IEL++ +G A+I+MY++CG I+ A +VFD M +RDV Y ++ISGL
Sbjct: 259 EIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGL 318
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
+ + +S AIELF M + P SM+ Y +EP
Sbjct: 319 SMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQ 378
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLLGR G LE A ++R M + PD+ +LG LL+AC++H +++LG++ + L
Sbjct: 379 IEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELE 438
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+R G +VLLS++YAS+ +W +VR M++ ++K PGCS IEV+ + EF+ G+
Sbjct: 439 DRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGD 498
Query: 453 RTNVLMEEI 461
+ E I
Sbjct: 499 LRHPQKERI 507
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 171/493 (34%), Positives = 264/493 (53%), Gaps = 63/493 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+Q K I + V+G + +A+ K+I FC+ S+ G LS+ +F +Q F +NT+I
Sbjct: 17 MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R ++ + P A ++ ML + + P+ +TF FI+ AC ++ + +G H V++ G
Sbjct: 77 RAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV 136
Query: 120 ESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
S D V L+ YA C M A R++FD
Sbjct: 137 ASSDRHVQTALVRFYAECCAMGDA-------------------------------RKLFD 165
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
++P + V W+ ++NGYV+ L EAL F M + G P+ + AL CA LGAL Q
Sbjct: 166 EIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQ 225
Query: 239 GRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WIH YV R +E D+ +GTA++DMYAKCGCI+ + VF+ M R+VF+++++I G A
Sbjct: 226 GKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFA 285
Query: 298 NHDQSASAIELFMRMQLE-GVVPN------------------------ESMSEIYGIEPG 332
H A++ RMQ+E G+ P+ E+M YGI P
Sbjct: 286 LHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPK 345
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+HY C+VDLL RAG L+ A K++R MP++P V GALL+ CR H +VDL + L+
Sbjct: 346 HEHYSCMVDLLCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELL 405
Query: 393 E----RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ +G +V LSNIY + ++ ++RR + D ++ PGCSLIEV+G V +F
Sbjct: 406 MVGNGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIEVEGEVNQF 465
Query: 449 VSGERTNVLMEEI 461
VSG+ ++ + +I
Sbjct: 466 VSGDISHPCLAQI 478
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/463 (35%), Positives = 256/463 (55%), Gaps = 27/463 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F V + F + ++ +LF R WNT+I G+ + P +A ++ +
Sbjct: 154 DVFVVNAAMHFLAVC--SSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWR 211
Query: 79 MLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137
M+ + P+ T ++ A L +G H V G ++N ++ +Y C
Sbjct: 212 MVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCG 271
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
++ A+ +F+ + ++SWT++I GYA+ G + AR++FD+MPE++ W+A++ GYVQ
Sbjct: 272 DLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQ 331
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
KEAL F+ MQ P+ +V L+AC+ LGAL+ G W+H Y+DR + L ++L
Sbjct: 332 CKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVML 391
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
GT ++DMY+KCG IE A VF +P ++ +T++ISGLANH + AI+ F RM G+
Sbjct: 392 GTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGL 451
Query: 318 VPNES------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
P+E M Y +E ++HY C+VDLLGRAG L+ A+
Sbjct: 452 QPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAE 511
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+V MP+EPD V GAL ACR+HG++ LG++ LVE G++VLL+N+YA
Sbjct: 512 HLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEAN 571
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+KVR M V KVPGCS IE++GVV EF+ ++++
Sbjct: 572 MRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHT 614
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 176/403 (43%), Gaps = 89/403 (22%)
Query: 56 WNTMIRGFA---EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
+N +R + ++ + LY +LRS P++ TF F+L+ACA G
Sbjct: 86 YNAALRALSLCTDRGLVTRCLPLYCSLLRSA-RPDHLTFPFLLKACARLQERNYGNAVLG 144
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
V+ LG+ + FV+N +H A C+ M ARKLFD S RD++SW +LI GY + G
Sbjct: 145 NVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPRE 204
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
A +MF +M AV+ P+ ++G ++ A
Sbjct: 205 ALEMFWRMVGDGAVT------------------------------PDEVTMIGVVSGSAQ 234
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS---------------- 276
L L+ GR +H YV+ +G+ + L ++DMY KCG +E A S
Sbjct: 235 LRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTM 294
Query: 277 ---------------VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
VFD MP RDVF + +L++G + A+ LF MQ V P++
Sbjct: 295 IVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDD 354
Query: 322 --------SMSEIYGIEPG--VQHY-------------GCLVDLLGRAGMLEAAKKVVRE 358
+ S++ +E G V HY LVD+ + G +E A +V +E
Sbjct: 355 ITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKE 414
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
+P E + A+++ HG D+ + + ++E L + +
Sbjct: 415 IP-EKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEI 456
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 178/516 (34%), Positives = 265/516 (51%), Gaps = 84/516 (16%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR--ACAD 100
RL R F WNT+IR A + P A A + M R+ P+ YTF +L+ AC
Sbjct: 68 RLLPGPASRDAFPWNTLIRLHAPAS-PRNALAYFACMRRAAVEPDAYTFPAVLKACACGV 126
Query: 101 -------------------TSCLFVGLICHAQVIRLGWESYD------FVLNGLLHLYAT 135
T V C R G + +D N ++ Y
Sbjct: 127 LGLPVHAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGARDLVSWNSMVAGYVA 186
Query: 136 CNCM--------------------------------DPARKLFDMSVNRDVISWTSLING 163
C + D AR+LFD + NRD++ W S+I+G
Sbjct: 187 CGELELAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVCWCSMIDG 246
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
YA+ G++ AR +F++MPE+N +SWS +++GYV+ EALE F M CG +P+
Sbjct: 247 YARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAA 306
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
VGA TACA LGAL+QGRW+H+Y+++ + D+++ TA+IDMY KCG ++ +F+SMP+
Sbjct: 307 VGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPD 366
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------------------- 321
+ V + +I GL H A++LF +M+ EG ++
Sbjct: 367 KSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGI 426
Query: 322 --SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
M + +G++P V+HYG LVDLLGRAG L+ A+ + MP+EP + G+LL ACR H
Sbjct: 427 FHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRSHR 486
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
V+L + +VE L D GV+VLLSNIYA W+GV ++RR M ++K G S+I
Sbjct: 487 CVELAELSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAEGMKKDIGRSVI 546
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
EVDG EFV+G ++ +E+ L+L + + S+
Sbjct: 547 EVDGQTHEFVNGGSSHSCKDEVHLMLQNLSNMVASI 582
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 36/271 (13%)
Query: 17 LWDPFAVGKIIGFCSASD----IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKA 72
L+D ++ +CS D G + LF + R W+ ++ G+ EP +A
Sbjct: 228 LFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEA 287
Query: 73 FALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132
L+++MLR P+ ACA L G W LH
Sbjct: 288 LELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGR----------W----------LHS 327
Query: 133 YATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI 192
Y ++ + LFD+ V T+LI+ Y K G++ + + +F+ MP+K+ V+W+ MI
Sbjct: 328 Y-----LEKKKVLFDVVVQ------TALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMI 376
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GI 251
G A++ F M+ G + ++ LTAC G + +G I + ++ G+
Sbjct: 377 IGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGM 436
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ + A++D+ + G ++ A ++MP
Sbjct: 437 DPKVEHYGALVDLLGRAGHLDHARHAIETMP 467
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 266/495 (53%), Gaps = 39/495 (7%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QI I + + + DPF V +++ CS ++ + + ++F Q +++ +I G
Sbjct: 47 QIPPIYAKIIRNHHHQDPFVVFELLRVCS--NLNSIGYASKIFSHTQNPNVYLYTALIDG 104
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
LY QM+ S +P++Y + +L+AC L G H+QV++LG S
Sbjct: 105 LVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSN 164
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ L+ LY C + AR++FD RDV++ T +IN Y G
Sbjct: 165 RSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI------------- 211
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ V W+AMI+G V+ ALE F MQ PN IV L+AC+ LGAL GRW+
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWV 271
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
+Y+D++ IEL+ +G A+I+MY++CG I+ A VF+ M ++V Y S+I G A H +S
Sbjct: 272 RSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKS 331
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A+ELF + +G P+ SM++ YGIEP ++HYGC
Sbjct: 332 VEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGC 391
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGR G LE A +R M + PD+ +LGALL+AC++HG+++L + +SLV
Sbjct: 392 MVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNAD 451
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G ++LLSN Y+S+ +W +VR M + + K PGCS IEV+ + EF+ G+ +
Sbjct: 452 SGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQK 511
Query: 459 EEIVLLLFGIDKHLK 473
E+I L +++ L+
Sbjct: 512 EKIYKKLEELNQILR 526
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 277/500 (55%), Gaps = 33/500 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+Q+KQI + +G + K++ +I +L + +++ T F++N +I
Sbjct: 1 MRQVKQIHGYTLRNGIDQTKILIEKLL------EIPNLHYAHKVLHHSPKPTLFLYNKLI 54
Query: 61 RGFA-EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ ++ + F+LY QML FLPN +TF+F+ AC S +G + H I+ G+
Sbjct: 55 QAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGF 114
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E F LL +Y ++ ARKLFD R V +W +++ G+A+ G + +A ++F
Sbjct: 115 EPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRL 174
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTACAFLGALDQ 238
MP +N VSW+ MI+GY + + EAL F M Q G PN + A A LGAL+
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEI 234
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLA 297
G+ + AY +NG ++ + A+++MYAKCG I+ A VF+ + + R++ ++ S+I GLA
Sbjct: 235 GQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLA 294
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H + ++L+ +M EG P++ SM+ + I P +
Sbjct: 295 VHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKL 354
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLLGRAG L A +V++ MP++PD+ + GALL AC H +V+L + ESL
Sbjct: 355 EHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFA 414
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ G +V+LSNIYAS QW+GV K+R+ M+ +++ K G S IE G + +F+ +R
Sbjct: 415 LEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDR 474
Query: 454 TNVLMEEIVLLLFGIDKHLK 473
++ EI LL G+ + +K
Sbjct: 475 SHPESNEIFALLDGVYEMIK 494
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/529 (30%), Positives = 275/529 (51%), Gaps = 64/529 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ + QI SG D + +GK+I C+ S L + RL +C F++NT++
Sbjct: 185 LRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 244
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG++E +EP + A++ +M+R F+ P++++F+F+++A A+ L G H Q ++ G
Sbjct: 245 RGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGL 304
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+S+ FV L+ +Y C C+ ARK+FD ++++W +++ + +S AR++FDK
Sbjct: 305 DSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDK 364
Query: 180 MPEKNAVSWSAMINGYVQV-------------------------------DLFKEALEHF 208
M +N SW+ M+ GY++ F E+ +F
Sbjct: 365 MLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYF 424
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
+ RPN + G L+AC+ GA + G+ +H +V+++G + + A+IDMY++C
Sbjct: 425 RELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRC 484
Query: 269 GCIETACSVFDSM-PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------ 321
G + A VF+ M R + ++TS+I+GLA H AI +F M GV+P+E
Sbjct: 485 GNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISL 544
Query: 322 ------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
M +Y IEP V+HYGC+VDL GR+G L+ A + +MPI P
Sbjct: 545 LYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPP 604
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
V LL AC HG+++L ++ + L E ++ G VLLSN+YA+ +W V +R+
Sbjct: 605 TAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRK 664
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL-------MEEIVLLL 465
M ++K+ SL+EV + +F + E+ + ++EI+L L
Sbjct: 665 SMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRL 713
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/483 (32%), Positives = 267/483 (55%), Gaps = 26/483 (5%)
Query: 15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFA 74
TL DPF + ++ G +++ +F + +R WNTMI + +AF
Sbjct: 141 ATLCDPFVETGFMDMYASC--GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFK 198
Query: 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA 134
L+++M S+ +P+ I+ AC T + + +I +L L+ +YA
Sbjct: 199 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYA 258
Query: 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
CMD AR+ F R++ T++++GY+K G++ A+ +FD+ +K+ V W+ MI+
Sbjct: 259 GAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISA 318
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254
YV+ D +EAL F M G +P+ + ++ACA LG LD+ +W+H+ + NG+E +
Sbjct: 319 YVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESE 378
Query: 255 IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314
+ + A+I+MYAKCG ++ VF+ MP R+V +++S+I+ L+ H +++ A+ LF RM+
Sbjct: 379 LSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQ 438
Query: 315 EGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
E V PNE SM++ Y I P ++HYGC+VDL GRA +L
Sbjct: 439 ENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLR 498
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A +V+ MP+ + + G+L++ACR+HG+++LGK + ++E DH+G VL+SNIYA
Sbjct: 499 EALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYA 558
Query: 411 STEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDK 470
++W V +RR ME+ V K G S I+ +G EF+ G++ + EI L +
Sbjct: 559 REQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVS 618
Query: 471 HLK 473
LK
Sbjct: 619 KLK 621
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 157/366 (42%), Gaps = 53/366 (14%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
+ ++N +R + +EP Y+++ + ++F IL+A + S LF G+ H
Sbjct: 76 SIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHG 135
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++ FV G + +YA+C G+I+
Sbjct: 136 VAFKIATLCDPFVETGFMDMYASC-------------------------------GRINY 164
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR +FD+M ++ V+W+ MI Y + L EA + F M+ P+ + ++AC
Sbjct: 165 ARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGR 224
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
G + R I+ ++ N + +D L TA++ MYA GC++ A F M R++F T++
Sbjct: 225 TGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAM 284
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY-------------------GIEPGV 333
+SG + + A +F + + + +V +M Y GI+P V
Sbjct: 285 VSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDV 344
Query: 334 QHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
++ G+L+ AK V + +E + + AL+N G +D ++ E
Sbjct: 345 VSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEK 404
Query: 391 LVERSL 396
+ R++
Sbjct: 405 MPRRNV 410
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 174/569 (30%), Positives = 293/569 (51%), Gaps = 87/569 (15%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
++ Q+ + + +L P +++ + I +L + + LF +Q T WN +I+
Sbjct: 29 REANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIK 88
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ E A AL+ ++L DF+P+++T +L+ CA L G H V+++G+
Sbjct: 89 CYIENQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGV 147
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FVL+ L+ +Y+ C ++ RK+FD ++DV+SW SLI+GYA+ G+I +A +MF++MP
Sbjct: 148 DKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMP 207
Query: 182 EK-------------------------------NAVSWSAMINGYVQV------------ 198
EK N+VSW+AMINGY++
Sbjct: 208 EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQ 267
Query: 199 -------------------DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
F +AL+ F M PN+ I+GA++A + + +L G
Sbjct: 268 MPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTG 327
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RW+H+Y+ ++G + D +LGT +I+MY+KCG +++A VF S+P + + +TS+I GL H
Sbjct: 328 RWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMH 387
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
+ELF M G+ P+ + M+ YGI+P ++H
Sbjct: 388 GLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEH 447
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGCL+D+L RAG LE AK + MPI+ + + +LL+ R HG++ +G+ + L++ +
Sbjct: 448 YGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLA 507
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
D G +V+LSN+YA+ W V +VR M+ ++K PGCS IE G + EF+ G++++
Sbjct: 508 PDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSH 567
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EEI + L + K L D +V
Sbjct: 568 PQTEEIYIKLCEMKKKLNVAGHIPDTTQV 596
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 229/366 (62%), Gaps = 24/366 (6%)
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
F+ N +L Y T + AR++FD RD++SW ++I+GYA +G++ +AR++F+ M ++
Sbjct: 107 FLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDR 166
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+A SWS+M++ Y + K+ALE + M+ P+ +V L+AC+ +GAL G +H
Sbjct: 167 DAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVH 226
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+V+ NG+ELD+ LGTA+IDMYAKCG IE + VF SMP +DV ++S+I GLANH
Sbjct: 227 QFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGH 286
Query: 304 SAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCL 339
A+ LF RM EG+ PNE SMS ++G+ P VQHYGC+
Sbjct: 287 DALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCM 346
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
VDLLGR+G +E AK+++R+MP EPD + ALL ACR++ +V++ +E + L +
Sbjct: 347 VDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHAD 406
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +VLLSNIYA W GV ++RR + ++++PG S IE + EF+SG+R++ +
Sbjct: 407 GHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSK 466
Query: 460 EIVLLL 465
EI +L
Sbjct: 467 EIYKML 472
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 48/337 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ +F + R F W++M+ + + A L+++M + P+ T +L
Sbjct: 151 GEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVL 210
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+D L VG H V G E + L+ +YA C ++ + ++F +DV+
Sbjct: 211 SACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVL 270
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W+S+I G A G +AL F+ M G
Sbjct: 271 TWSSMIIGLANHG-------------------------------FGHDALSLFSRMLSEG 299
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+PN +G L +C LG + G ++ + +G+ + ++D+ + G IE A
Sbjct: 300 LQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEA 359
Query: 275 CSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
+ MP D + +L+ A ++ ++ V E+M+++ ++P
Sbjct: 360 KQLIRDMPFEPDAVIWRALL----------GACRIYKNVE----VAEEAMAKLRVLDPHA 405
Query: 334 Q-HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
HY L ++ +A E ++ R + E + G
Sbjct: 406 DGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPG 442
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 20/171 (11%)
Query: 242 IHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+HA ++G D+ + TA+++ YAK G + A + FD P RDVF +++
Sbjct: 61 LHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRG 120
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ---------------HYGCLVDLLGR 345
+ A A +F M+ +V +M Y + V + ++ +
Sbjct: 121 EVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTK 180
Query: 346 AGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+ A ++ REM + PD + ++L+AC G + +G E V VE
Sbjct: 181 GRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAE-VHQFVE 230
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 170/506 (33%), Positives = 267/506 (52%), Gaps = 57/506 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q KQI + SG D V ++ + G+++ ++LF + R WN +I
Sbjct: 237 LEQGKQIHCYAIRSGIESDVLVVNGLVNM--YAKCGNVNTAHKLFERMPIRDVASWNAII 294
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G++ ++ +A A + +M PN+ T +L ACA L G H IR G+E
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFE 354
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S D V N +L+N YAK G ++ A ++F++M
Sbjct: 355 SNDVVGN-------------------------------ALVNMYAKCGNVNSAYKLFERM 383
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+KN V+W+A+I+GY Q EAL F MQ G +P+ IV L ACA AL+QG+
Sbjct: 384 PKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGK 443
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y R+G E ++++GT ++D+YAKCG + TA +F+ MP +DV ++T++I H
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
A+ LF +MQ G + + M YG+ P ++HY
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHY 563
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
CLVDLLGRAG L+ A +++ M +EPD V GALL ACR+H +++LG++ + L E
Sbjct: 564 ACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDP 623
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
D+ G +VLLSNIYA ++W V K+R+ M++ V+K PGCS++ V V F+ G+RT+
Sbjct: 624 DNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHP 683
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGN 482
E+I +L + + ++ + + N
Sbjct: 684 QSEQIYAMLEILYEQMRKAGYVPNTN 709
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 185/380 (48%), Gaps = 58/380 (15%)
Query: 26 IIGFCSAS---DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS 82
I+G AS G L + ++F + R WN +I G+++ +P +A AL+ +M +
Sbjct: 156 IVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVN 215
Query: 83 DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
PN+ T ++ CA L G H IR G ES V+NGL
Sbjct: 216 GIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL------------- 262
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
+N YAK G ++ A ++F++MP ++ SW+A+I GY
Sbjct: 263 ------------------VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHH 304
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EAL FN MQ+ G +PN +V L ACA L AL+QG+ IH Y R+G E + ++G A++
Sbjct: 305 EALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALV 364
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
+MYAKCG + +A +F+ MP ++V A+ ++ISG + H A+ LF+ MQ +G+ P+
Sbjct: 365 NMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSF 424
Query: 322 -------SMSEIYGIEPGVQHYGC---------------LVDLLGRAGMLEAAKKVVREM 359
+ + +E G Q +G LVD+ + G + A+K+ M
Sbjct: 425 AIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERM 484
Query: 360 PIEPDNYVLGALLNACRVHG 379
P E D ++ A +HG
Sbjct: 485 P-EQDVVSWTTMILAYGIHG 503
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/437 (27%), Positives = 198/437 (45%), Gaps = 95/437 (21%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+W I G+ + KA LY QM R+ P+ F +++AC S L G H +
Sbjct: 87 VWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDI 146
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
I G+ES V L +Y C ++ AR++FD RDV+SW ++I GY+++GQ
Sbjct: 147 IARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY--- 203
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
EAL F+ MQ+ G +PN + +V + CA L
Sbjct: 204 ----------------------------EALALFSEMQVNGIKPNSSTLVSVMPVCAHLL 235
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
AL+QG+ IH Y R+GIE D+++ +++MYAKCG + TA +F+ MP RDV ++ ++I
Sbjct: 236 ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIG 295
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHYG--------- 337
G + + Q A+ F RMQ+ G+ PN + + ++ +E G Q +G
Sbjct: 296 GYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFES 355
Query: 338 ------CLVDLLGRAGMLEAAKKVVREMP------------------------------- 360
LV++ + G + +A K+ MP
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQ 415
Query: 361 ---IEPDNYVLGALLNACRVHGDVDLGKE----TVESLVERSLDHEGVHVLLSNIYASTE 413
I+PD++ + ++L AC ++ GK+ T+ S E ++ V L +IYA
Sbjct: 416 AQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVV---VGTGLVDIYAKCG 472
Query: 414 QWNGVEKVRRGMEDNEV 430
N +K+ M + +V
Sbjct: 473 NVNTAQKLFERMPEQDV 489
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 126/276 (45%), Gaps = 30/276 (10%)
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
NAV W I GYV+ + +AL + MQ G P+ + + AC L GR +H
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+ G E D+I+GTA+ MY KCG +E A VFD MP RDV ++ ++I+G + + Q
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203
Query: 304 SAIELFMRMQLEGVVPNESM-----------------SEIY------GIEPGVQHYGCLV 340
A+ LF MQ+ G+ PN S +I+ GIE V LV
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263
Query: 341 DLLGRAGMLEAAKKVVREMPIEPD---NYVLGAL-LNACRVHGDVDLGKETVESLVERSL 396
++ + G + A K+ MPI N ++G LN+ + V + S+
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323
Query: 397 DHEGVHVLLSNIYA--STEQWNGVEKVRRGMEDNEV 430
V ++++A +Q +G +R G E N+V
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGY-AIRSGFESNDV 358
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 166/455 (36%), Positives = 252/455 (55%), Gaps = 28/455 (6%)
Query: 14 SGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
+G WD + ++ + D++ +LF + +R +WN MIR + A
Sbjct: 75 TGFWWDAYTASSLMDMYTLLGRADVAR--KLFDEMPHRALVVWNMMIRCYVRCGRYTAAI 132
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
AL ++M RS P+ T + C+ L +G HA + + S V N LL +Y
Sbjct: 133 ALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSLP-VANALLDMY 191
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
C++ A KLF+ +R++ISWT L++GYA +GQ+ AR +F + EK+ + W+AMIN
Sbjct: 192 MKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMIN 251
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
VQ F+EAL F MQ+ P+ IV LT CA LGALDQG WIH + +++
Sbjct: 252 ACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKV 311
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
D +LGTA+IDMYAKCG ++ + VF+ M RD A+TS+I GLA + Q+ A+ELF M+
Sbjct: 312 DAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDME 371
Query: 314 LEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
V P+ +M ++Y I P ++HY CLV+LLGRAG+L
Sbjct: 372 RSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAGLL 431
Query: 350 EAAKKVVREMPIEPDNYVL-GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408
+ A+K++R++ I D L GALL AC+ G+V++ + + + E+ V++L+SN+
Sbjct: 432 DEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIPDVNLLMSNV 491
Query: 409 YASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
YA+ +W +VR M ++K GCSLIEV G
Sbjct: 492 YATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVKG 526
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 159/361 (44%), Gaps = 56/361 (15%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
N +IR A + + A+Y + + +++T+ F+LRA G HA ++
Sbjct: 15 NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMK 74
Query: 117 LG--WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
G W++Y + L+ +Y D ARKLFD +R ++ W +I Y + G+ + A
Sbjct: 75 TGFWWDAY--TASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAI 132
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+ ++M G P+ +V ++T C+ G
Sbjct: 133 ALAEEMERS-------------------------------GLTPDKVTLVTSVTVCSRAG 161
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L GR IHAY+D + + A++DMY K GC+E A +F+ MP+R++ ++T L+S
Sbjct: 162 DLSLGRRIHAYMD-GVFGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVS 220
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
G A Q A LF + + ++ +M I VQH G E A
Sbjct: 221 GYAFAGQLDKARVLFYQCSEKDLIMWTAM-----INACVQH-----------GCFEEALS 264
Query: 355 VVREMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV-HVLLSNIYA 410
+ REM +EPD + + LL C G +D G+ + V+R + + V L ++YA
Sbjct: 265 LFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYA 324
Query: 411 S 411
Sbjct: 325 K 325
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 267/476 (56%), Gaps = 31/476 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ + +G +D + ++G ++ +G + +++F + R WN +I +
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYAS--LGKIEITHKVFDEMPQRDVVSWNGLISSYV 123
Query: 65 EKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
A ++K+M + L + T L AC+ L +G + V+ +E
Sbjct: 124 GNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSV 182
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ N L+ ++ C C+D AR +FD +++V WTS++ GY +G+I AR +F++ P K
Sbjct: 183 RIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVK 242
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ V W+AM+NGYVQ + F EALE F MQ G RP++ +V LT CA GAL+QG+WIH
Sbjct: 243 DVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y++ N + +D ++GTA++DMYAKCGCIETA VF + RD ++TSLI GLA + S
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSG 362
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
A++L+ M+ GV + SM+E + ++P +H CL
Sbjct: 363 RALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLG---ALLNACRVHGDVDLGKETVESLVERSL 396
+DLL RAG+L+ A++++ +M E D ++ +LL+A R +G+V + + E L + +
Sbjct: 423 IDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEV 482
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
H LL+++YAS +W V VRR M+D +RK PGCS IE+DGV EF+ G+
Sbjct: 483 SDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGD 538
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 157/342 (45%), Gaps = 52/342 (15%)
Query: 48 LQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
LQ + ++N M++ A+ K AL+ ++ P+N+T +L++ + G
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
H ++ G E +V N L+ +YA+ ++ K+FD RDV+SW LI+ Y +
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G+ A +F +M +++ + + + IV L
Sbjct: 126 GRFEDAIGVFKRMSQESNLKF------------------------------DEGTIVSTL 155
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
+AC+ L L+ G I+ +V E+ + +G A++DM+ KCGC++ A +VFDSM +++V
Sbjct: 156 SACSALKNLEIGERIYRFV-VTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVK 214
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY----GIEPGVQHYGCLVDLL 343
+TS++ G + + A LF R ++ VV +M Y + ++ + C+
Sbjct: 215 CWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCM---- 270
Query: 344 GRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+ I PDN+VL +LL C G ++ GK
Sbjct: 271 -------------QTAGIRPDNFVLVSLLTGCAQTGALEQGK 299
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 276/512 (53%), Gaps = 67/512 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLS--HGYRLFVCLQYRTTFIWN 57
+ +KQ + + +G L D + G ++ + + S LS R+F ++ F+WN
Sbjct: 68 LHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWN 127
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
MI+ E NEP KA LY +M+ + F PN YT+ +L+AC+D + G+ HA +++
Sbjct: 128 CMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKH 187
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G +L+ + +YA+ + AR++ D K G++
Sbjct: 188 GLGGDGHILSSAIRMYASFGRLVEARRILD-----------------DKGGEVDAV---- 226
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
MP++ F EALE F+ MQ RP + L+ACA LGALD
Sbjct: 227 -CMPDRKGC--------------FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALD 271
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
QGRWIH Y RN I+LD +LGT+++DMYAKCG I+ A VF+ M N++V ++ ++I GLA
Sbjct: 272 QGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLA 331
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H ++ AI+LF +M + PNE SM + YG+EP +
Sbjct: 332 MHGRAEDAIDLFSKMDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQI 388
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLLGRAG+L A+KVV +P EP V GALL ACR HG+V+LG+ + L+E
Sbjct: 389 EHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLE 448
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV-DGVVCEFVSGE 452
+ G + LLSNIYA +W V +VR+ M++ ++ PG S+I++ G V +F+ G+
Sbjct: 449 LEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGD 508
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ +++I +L + + L+ + D ++V
Sbjct: 509 GSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV 540
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 241/430 (56%), Gaps = 54/430 (12%)
Query: 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
+R W T+I+ F + +A + +M + T +L AC++ L +G
Sbjct: 174 HRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQK 233
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
H+ + R DM DV +L++ Y K
Sbjct: 234 VHSYI----------------------------RHYIDMKA--DVFVGNALLDMYLKCDD 263
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
++ A ++FD+MP KN V+W+AMI+G ++EAL+ F MQ G +P+ +VG L +
Sbjct: 264 LNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNS 323
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LG L+ G+W+HAY+ RN I D +G A++DMYAKCG I+ A VF+SM RDV++Y
Sbjct: 324 CANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSY 383
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSE 325
T++I GLA H ++ A ++F M G+ PNE MS+
Sbjct: 384 TAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSD 443
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y + P +HYGC++DLLGRAG+++ A++++ +M I PD + GALL ACR+HG+VD+G+
Sbjct: 444 KYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGE 503
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
++ L E D EG ++L++N+Y+S +W K+R+ M++ ++RK PGCSLIEVDGVV
Sbjct: 504 SVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVV 563
Query: 446 CEFVSGERTN 455
EF G++++
Sbjct: 564 HEFRKGDKSH 573
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 185/403 (45%), Gaps = 61/403 (15%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L+H + CL + N +IR + + + +ML P+ +T +L+A
Sbjct: 65 LTHSHDAQFCLS-----LCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKA 119
Query: 98 CADTSCLFVGLICHAQVIRLGWESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
A + G HA+ I+ G ++ +V N L+ LY+ C + +K+FD +RD++S
Sbjct: 120 LALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVS 179
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
WT+LI + K+G L+ A+E F M++C
Sbjct: 180 WTTLIQAFTKAG-------------------------------LYSRAVEAF--MEMCDL 206
Query: 217 RPNHAG--IVGALTACAFLGALDQGRWIHAYVDRNGIEL--DIILGTAIIDMYAKCGCIE 272
R G +V L+AC+ LG L+ G+ +H+Y+ R+ I++ D+ +G A++DMY KC +
Sbjct: 207 RLRADGRTLVVVLSACSNLGDLNLGQKVHSYI-RHYIDMKADVFVGNALLDMYLKCDDLN 265
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332
+A VFD MP ++V + ++ISGLA + A++ F MQ +GV P+E
Sbjct: 266 SAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDE----------- 314
Query: 333 VQHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
V G L + G+LE K V +R I D +V ALL+ G +D E
Sbjct: 315 VTLVGVL-NSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFE 373
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGV--EKVRRGMEDNEV 430
S+ R + + ++ V E R G+E NEV
Sbjct: 374 SMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEV 416
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 159/467 (34%), Positives = 258/467 (55%), Gaps = 26/467 (5%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F + R W+TMIR + E A L ++M P+ ++ ADT+
Sbjct: 181 VFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTAN 240
Query: 104 LFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
+ +G HA VIR + V LL +YA C + AR+LF+ + V+SWT++I
Sbjct: 241 MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 300
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
G +S ++ AR +FD ++ + W+AM++ Y Q + +A F+ M+ G RP
Sbjct: 301 AGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKV 360
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
IV L+ CA GALD G+W+H+Y+D+ +E+D IL TA++DMYAKCG I A +F
Sbjct: 361 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEA 420
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------------- 320
+RD+ + ++I+G A H A+++F M+ +GV PN
Sbjct: 421 ISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK 480
Query: 321 ---ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
E M +G+ P ++HYGC+VDLLGRAG+L+ A ++++ MPI+P+ V GAL+ ACR+
Sbjct: 481 KLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL 540
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H + LG+ L+E ++ G +VL+SNIYA+ +W+ VR+ M+ ++K PG S
Sbjct: 541 HKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHS 600
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+IEV+G V EF+ G++++ + I +L + + L + D + V
Sbjct: 601 VIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTV 647
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 51/350 (14%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN +I + ++N+P A +Y Q+ + DF +N+ +L+AC S +G H V+
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G + FV N L+ +Y C C++ AR +FD + RDV+SW+++I +++ + +A +
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+ +M N+MQ+ RP+ +V + A
Sbjct: 212 LIREM----------------------------NFMQV---RPSEVAMVSMVNLFADTAN 240
Query: 236 LDQGRWIHAYVDRNG--IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+ G+ +HAYV RN + + TA++DMYAKCG + A +F+ + + V ++T++I
Sbjct: 241 MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 300
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
+G ++ A LF Q V+ +M Y + L D + +G
Sbjct: 301 AGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG------ 354
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403
+ P + +LL+ C V G +DLGK V +D E V V
Sbjct: 355 -------VRPTKVTIVSLLSLCAVAGALDLGK-----WVHSYIDKERVEV 392
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 13/302 (4%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +LF L +T W MI G N +A AL+ D + ++ +L
Sbjct: 276 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVM----IWTAML 331
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM----SVN 151
A A +C+ Q+ G + LL L A +D + + V
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 391
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
D I T+L++ YAK G I+ A ++F + ++ W+A+I G+ +EAL+ F M
Sbjct: 392 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM 451
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILGTAIIDMYAKCGC 270
+ G +PN +G L AC+ G + +G+ + V G+ I ++D+ + G
Sbjct: 452 ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGL 511
Query: 271 IETACSVFDSMPNR-DVFAYTSLISGLANHDQSA---SAIELFMRMQLEGVVPNESMSEI 326
++ A + SMP + + + +L++ H A + ++ E N MS I
Sbjct: 512 LDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNI 571
Query: 327 YG 328
Y
Sbjct: 572 YA 573
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%)
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+ W+ +I Y + + + AL + ++ F ++ L AC + G+ IH
Sbjct: 89 SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHG 148
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+V + G++ D+ +G A++ MY +C C+E A VFD M RDV +++++I L+ + +
Sbjct: 149 FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM 208
Query: 305 AIELFMRMQLEGVVPNE 321
A+EL M V P+E
Sbjct: 209 ALELIREMNFMQVRPSE 225
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 154/377 (40%), Positives = 225/377 (59%), Gaps = 24/377 (6%)
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V + L+ LY TC + AR +FD RDV++W +I GY K+G + AR++FD MPE+N
Sbjct: 115 VSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERN 174
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+ +I GY Q+ ++A+E F MQ+ G + ++ L AC LGA+D G W+H
Sbjct: 175 VVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHR 234
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+V R G+ +I L +IIDMY KCGCIE A VF+ M + V +T+LI+G A H
Sbjct: 235 FVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQ 294
Query: 305 AIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCLV 340
A+E+F RM+ E + PN M Y I+P V+HYGC+V
Sbjct: 295 AVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMV 354
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ A+ +V+ MP++ + + GALL A R HGD LG++ + L+E ++ G
Sbjct: 355 DLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLIELEPNNSG 414
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
++LLSNI+A E+W V K+R+ M + +R VPG S IEVDG+V EF S + ++ +
Sbjct: 415 NYILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVDGMVHEFTSRDWSHPFIHT 474
Query: 461 IVLLLFGIDKHLKSLCF 477
I +L ID ++KS+ F
Sbjct: 475 ICEVLCEIDTNMKSVGF 491
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 138/320 (43%), Gaps = 41/320 (12%)
Query: 10 HLTVSGTLWDPFAVGKIIGF----CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
H+ + +++D AV ++ + GD +H LF + R W T+I G+A+
Sbjct: 128 HVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQ 187
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
P KA ++++M + +L AC D + +G H V+R G +
Sbjct: 188 MKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPL 247
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
+N ++ +Y C C++ A ++F+ + V++WT+LI G+A G A +MF +M +N
Sbjct: 248 MNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMEREN- 306
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW-IHA 244
PN + L+AC+ +G D GRW +
Sbjct: 307 ------------------------------MAPNAVTFLAILSACSHVGLTDLGRWYFNI 336
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANH-DQS 302
V + I+ + ++D+ + GC++ A + +MP + + + +L++ H D
Sbjct: 337 MVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAG 396
Query: 303 ASAIELFMRMQLEGVVPNES 322
L ++LE PN S
Sbjct: 397 LGEQALLHLIELE---PNNS 413
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 170/509 (33%), Positives = 269/509 (52%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
+K++KQIQ+ + D + K+I C+ + + + ++LF + ++N+M
Sbjct: 39 LKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSM 98
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG++ N P+KA +L+ + L + LP++YTF +L+AC G H I+LG
Sbjct: 99 FRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLG- 157
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+N + +LIN YA + A+++FD+
Sbjct: 158 ------------------------------LNENPYVCPTLINMYAGCNDVDGAQRVFDE 187
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ E VS++A+I GY + EAL F +Q +PN ++ L++CA LGALD G
Sbjct: 188 ILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLG 247
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WIH YV +NG++ + + TA+IDMYAKCG ++ A SVF+SM RD A++++I A H
Sbjct: 248 KWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMH 307
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
Q + +F M V P+E SMSE+YGI PG++H
Sbjct: 308 GQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKH 367
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG+L A K + E+PI+P + LL++C HG+++L K+ + ++E
Sbjct: 368 YGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELD 427
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H G +V+LSN+ A +W V+ +R+ M K+PGCS IEVD VV EF SG+ +
Sbjct: 428 DSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVH 487
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ + L + K LKS+ + D + V
Sbjct: 488 YVSTALHRALDELVKELKSVGYVPDTSLV 516
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 178/524 (33%), Positives = 268/524 (51%), Gaps = 61/524 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+ QI + + + + V ++I S+ + L + +F C + F++N +I
Sbjct: 53 LPQLHQIHAQIFLHNLFSNSRVVTQLIS--SSCSLKSLDYALSIFRCFDHPNLFVFNALI 110
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG AE + + + + MLR P+ T F+L++ A + +G H V++LG E
Sbjct: 111 RGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE 170
Query: 121 SYDFVLNGLLHLYAT---------------------------------CNCMD--PARKL 145
FV L+ +Y C D A L
Sbjct: 171 FDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASL 230
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F+ R+ SW SLING+ ++G + AR++F +MPEKN VSW+ MING+ Q ++AL
Sbjct: 231 FEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKAL 290
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
F M G RPN +V AL AC +GAL G IH Y+ NG +L+ +GTA++DMY
Sbjct: 291 SMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMY 350
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----- 320
AKCG I++A VF +D+ ++ +I G A H A++ F++M+ G+ P+
Sbjct: 351 AKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFL 410
Query: 321 -------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
ESM Y IEP ++HY +VDLLGRAG L+ A ++ MPI
Sbjct: 411 AILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPI 470
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
PD + GAL ACR H ++++ + T E L++ H G +V LSN+YA+ +W VE+V
Sbjct: 471 NPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERV 530
Query: 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
R M++ V K PG S IEV+G V FV+G+ +V EEI L L
Sbjct: 531 RTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKL 574
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 173/496 (34%), Positives = 277/496 (55%), Gaps = 37/496 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+Q++LT G F K+I FC+ + + +L++ +F + T ++ MI
Sbjct: 19 LNHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLT-LSNLTYARLIFDHIPSLNTHLFTAMI 77
Query: 61 RGFA--EKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
+A P A +L++ MLRS PN++ F L+ C + SC L HAQ+++
Sbjct: 78 TAYAAHPATHP-SALSLFRHMLRSQPPRPNHFIFPHALKTCPE-SCAAESL--HAQIVKS 133
Query: 118 GWESYDFVLNGLLHLYATCNC-MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ Y V L+ Y+ + + A+K+FD +R V+S+T++++G+A+ G + A ++
Sbjct: 134 GFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRV 193
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F +M +++ SW+A+I G Q F + +E F M RPN +V AL+AC +G L
Sbjct: 194 FGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGML 253
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
GRWIH YV +NG+ D + A++DMY KCG + A VF+ P + + ++ S+I+
Sbjct: 254 QLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCF 313
Query: 297 ANHDQSASAIELFMRMQLE---GVVPN------------------------ESMSEIYGI 329
A H QS SAI +F +M +E GV P+ E M + YGI
Sbjct: 314 ALHGQSDSAIAIFEQM-VEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGI 372
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EP ++HYGCL+DLLGRAG + A VV+ M +EPD V G+LLN C+VHG DL + +
Sbjct: 373 EPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAK 432
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L+E + G ++L+N+Y +W+ V V R ++ + KVPGCS IEVD V +F
Sbjct: 433 KLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQKSYKVPGCSWIEVDDQVHQFY 492
Query: 450 SGERTNVLMEEIVLLL 465
S +++N E++ ++L
Sbjct: 493 SLDKSNPKTEDLYIVL 508
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 172/506 (33%), Positives = 272/506 (53%), Gaps = 29/506 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSA-SDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ Q K++ + + + + + K++ +A + S+ LF L F W +
Sbjct: 21 LNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTAL 80
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR +A + +A + Y M + P ++TFS + ACA +G HAQ + LG
Sbjct: 81 IRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGG 140
Query: 120 ESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
S D +V N ++ +Y C + AR +FD RDVISWT LI Y + G + AR +FD
Sbjct: 141 FSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFD 200
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+P K+ V+W+AM+ GY Q + +ALE F ++ G + +VG ++ACA LGA
Sbjct: 201 GLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKY 260
Query: 239 GRWIHAYVDRNGIEL--DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
WI + +G + ++++G+A+IDMY+KCG +E A VF M R+VF+Y+S+I G
Sbjct: 261 ANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGF 320
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A H ++ +AI+LF M GV PN SM + YG+ P
Sbjct: 321 AIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPT 380
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+ Y C+ DLL RAG LE A ++V MP+E D V GALL A VHG+ D+ + + L
Sbjct: 381 AELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLF 440
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV-DGVVCEFVSG 451
E D+ G ++LLSN YAS +W+ V KVR+ + + ++K PG S +E +G++ +FV+G
Sbjct: 441 ELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAG 500
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCF 477
+ ++ + EI L + + LK + +
Sbjct: 501 DVSHPKINEIKKELNDLLERLKGIGY 526
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 262/458 (57%), Gaps = 24/458 (5%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
RT WN+MI G+++ +A L+++ML+ + +T +L A + L +G
Sbjct: 201 RTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFV 260
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H ++ G E V N L+ +YA C + A+ +FD +++DV+SWTS++N YA G +
Sbjct: 261 HLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLV 320
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A Q+F+ MP KN VSW+++I VQ + EA+E F+ M + G P+ A +V L+ C
Sbjct: 321 ENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCC 380
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
+ G L G+ H Y+ N I + + L ++IDMYAKCG ++TA +F MP ++V ++
Sbjct: 381 SNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWN 440
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEI 326
+I LA H AIE+F MQ G+ P+E M
Sbjct: 441 VIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMIST 500
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+ I PGV+HY C+VDLLGR G L A ++++MP++PD V GALL ACR++G++++ K+
Sbjct: 501 FRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQ 560
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
++ L+E + G++VLLSN+Y+ +++W+ ++K+R+ M+D+ ++K S IE+DG
Sbjct: 561 IMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCY 620
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+F+ ++ + I +L + HLKS+ + +EV
Sbjct: 621 QFMVDDKRHCASTGIYSILDQLMDHLKSVGYPCKSSEV 658
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 200/390 (51%), Gaps = 52/390 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK++K + + + + G +GK++ C GDL + + LF + F++N +I
Sbjct: 52 MKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQE--GDLRYAHLLFDQIPQPNKFMYNHLI 109
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ N+P+K+ L++QM+ + +PN +TF F+L+ACA + +I HAQ I+LG
Sbjct: 110 RGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMG 169
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ V N +L Y C + AR++FD +R ++SW S+I GY+K G A +F +M
Sbjct: 170 PHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEM 229
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ V+ D+F +V L+A + LD GR
Sbjct: 230 LQLG-----------VEADVFT--------------------LVSLLSASSKHCNLDLGR 258
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
++H Y+ G+E+D I+ A+IDMYAKCG ++ A VFD M ++DV ++TS+++ AN
Sbjct: 259 FVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQG 318
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+A+++F M ++ VV S+ CLV + G A ++ M
Sbjct: 319 LVENAVQIFNHMPVKNVVSWNSI------------ICCLV----QEGQYTEAVELFHRMC 362
Query: 361 IE---PDNYVLGALLNACRVHGDVDLGKET 387
I PD+ L ++L+ C GD+ LGK+
Sbjct: 363 ISGVMPDDATLVSILSCCSNTGDLALGKQA 392
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 24/160 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +F + + WN +I A +A ++K M S P+ TF+ +L
Sbjct: 419 GALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLL 478
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLN------GLLHLYATCNCM-------DPA 142
AC+ H+ ++ +G +D +++ G+ H + + +
Sbjct: 479 SACS-----------HSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAM 527
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ M V DV+ W +L+ G + IA+Q+ ++ E
Sbjct: 528 TLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLE 567
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 273/529 (51%), Gaps = 64/529 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ + QI G D + GK+I C+ S L + RL +C F++NT++
Sbjct: 10 LRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 69
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG++E +EP + A++ +M+R F+ P++++F+F+++A + L G H Q ++ G
Sbjct: 70 RGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGL 129
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN----------------- 162
ES+ FV L+ +Y C C++ ARK+FD ++++W ++I
Sbjct: 130 ESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDK 189
Query: 163 --------------GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
GY K+G++ A+++F +MP ++ VSWS MI G F E+ +F
Sbjct: 190 MLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYF 249
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
+Q G PN + G L+AC+ G+ + G+ +H +V++ G + + A+IDMY++C
Sbjct: 250 RELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC 309
Query: 269 GCIETACSVFDSM-PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
G + A VF+ M R + ++TS+I+GLA H Q A+ LF M GV P+
Sbjct: 310 GNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISL 369
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
M +Y IEP ++HYGC+VDL GR+G L+ A + +MPI P
Sbjct: 370 LHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPP 429
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
V LL AC HG+++L ++ + L E ++ G VLLSN YA+ +W V +R+
Sbjct: 430 TAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRK 489
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL-------MEEIVLLL 465
M ++K SL+EV + +F +GE+ + ++EI+L L
Sbjct: 490 SMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRL 538
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 263/498 (52%), Gaps = 25/498 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M +++Q+ + VSG L G+ + S + ++S+ +F + Y F++NTMI
Sbjct: 1 MHEVRQLHAQFVVSGLLNHHSLCGRRL-LESYVTMSEISYARSIFERIPYLDVFVYNTMI 59
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG P + L+ ++L P+NYT++F+L+AC++ L G H Q+I+ G
Sbjct: 60 RGLMLGKRPYDSLLLFNELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGIS 119
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ + L+H+Y + + A + + ++ S+I+GY G + AR MFD+M
Sbjct: 120 PNTHIHSSLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQM 179
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ SWSA+I G + + EAL F M + PN + +V L+ACA LGAL QGR
Sbjct: 180 KAKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGR 239
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAY+DR G ++ I L TA+IDMYAKCG I++ F MP RD+ + ++ISG A +
Sbjct: 240 WIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYG 299
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
Q+ ELF M +G+ PN M GI P ++HY
Sbjct: 300 QAKKCFELFEEMLADGIYPNGVIFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHY 359
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG L+ A++ + MP +P++ + G++L+ACR H D++ G L+E
Sbjct: 360 GCMVDLLGRAGRLKEAEEFIISMPEKPNSVIWGSMLSACRTHNDLNRGSWAFRHLIELEP 419
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ L ++ + + K+R+ +ED + G S IEVDG + EF+ G+ +
Sbjct: 420 RSGDRYKLAGLMFGNAGEKQEATKIRKMIEDQGMETTSGSSFIEVDGTIHEFLVGDTIHN 479
Query: 457 LMEEIVLLLFGIDKHLKS 474
EI + G++ L++
Sbjct: 480 EAAEIYKVWKGLNGLLEA 497
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 171/542 (31%), Positives = 281/542 (51%), Gaps = 63/542 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K +K++ S + + L ++G + A+ G+ + +F + + +N MIR
Sbjct: 52 KTLKKLHSKILIDQNLHPNPSLGIKLMRAYAA-CGEPCYTRHIFDEITDKNVVFFNVMIR 110
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ A ++K M F P+NYT+ +L+AC+ + L+VGL H V++LG +
Sbjct: 111 SYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDM 170
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA-------- 173
++ NGL+ +Y C +D AR++ D RD++SW S++ GYA++G+ + A
Sbjct: 171 NLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREME 230
Query: 174 -----------------------------RQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+ MF K+ EK+ +SW+ MI YV + EA
Sbjct: 231 DLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEA 290
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
++ + MQ+ G P+ I L AC L A GR IH YV+R + +++L A+IDM
Sbjct: 291 VDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDM 350
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---- 320
YAKCGC++ A +VFD M RDV ++TS+IS Q A+ LF +M+ G P+
Sbjct: 351 YAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAF 410
Query: 321 --------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
M+E YGI PG++HY C+VDLLGRAG ++ A + R+MP
Sbjct: 411 VSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMP 469
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420
+EP+ V G+LL+ACRV+ +++ + L + + + G +VLLSNIYA +W VE
Sbjct: 470 MEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVET 529
Query: 421 VRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
VR M ++K+PG S +E++ V F++G++++ +EI L + +K L + +
Sbjct: 530 VRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPE 589
Query: 481 GN 482
+
Sbjct: 590 TD 591
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/530 (31%), Positives = 270/530 (50%), Gaps = 57/530 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ KQI +++ G DPF GK++ C+ S L + RLF F+ NT+I
Sbjct: 18 LTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG E + P + + +M R+ F P++++F+FI++A A+ + VG+ H Q + G
Sbjct: 78 RGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGL 137
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+++ FV L+ +Y C + ARK+FD + I+W +++ + G + R++FD
Sbjct: 138 DTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDL 197
Query: 180 MPEKNA-------------------------------VSWSAMINGYVQVDLFKEALEHF 208
MP +N VSWS MI G+ F+EA F
Sbjct: 198 MPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFF 257
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
+Q G RPN + G L+ACA GAL+ G+ +H +++++G+ + + A++D Y+KC
Sbjct: 258 RELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKC 317
Query: 269 GCIETACSVFDSMPN-RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------ 321
G + A VF+ + N R++ ++TS+++ LA H AI +F +M+ G+ P+E
Sbjct: 318 GNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISL 377
Query: 322 ------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
M +Y IEP ++HYGC+VDL GRAG L+ A + V +MPI
Sbjct: 378 LYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPC 437
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
+ LL AC +HGDV L ++ E L E ++ HVLLSN YA +W VRR
Sbjct: 438 TAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRR 497
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
M + + K PG S+IEVD ++ F++G + + EE L I + L+
Sbjct: 498 SMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLR 547
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/571 (30%), Positives = 284/571 (49%), Gaps = 89/571 (15%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+++ QIQ+ + G + F I CS + H +LF + T WN M R
Sbjct: 26 ERLHQIQAQIVTHGLEHNDFVAPNFITTCSR--FKRIHHARKLFDKIPQPNTATWNAMFR 83
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G+ + L+ ++ R +PN +TF I+++C + G H + G++S
Sbjct: 84 GYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKS 143
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN------------------- 162
FV L+ +Y+ C++ A K+F R+V+ WT++IN
Sbjct: 144 NSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAP 203
Query: 163 ------------GYAKSGQISIARQMFDKMPEKNAVSWSAMIN----------------- 193
GY +S ++ AR++FDKMP ++ +SW+AM+N
Sbjct: 204 ERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDE 263
Query: 194 --------------GYVQVDLFKEALEHFNYMQLCGFR-PNHAGIVGALTACAFLGALDQ 238
GYV+ LF E LE F M + G PN +V L+AC+ LGALD
Sbjct: 264 MPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDM 323
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+W+H Y + G + ++ +G +IDMYAKCG IE A VF+ + +D+ ++ ++I+GLA
Sbjct: 324 GKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAI 383
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + A+ +F RM+ EG P+ +SM + Y I P ++
Sbjct: 384 HGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIE 443
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGRAG+L+ A +R+MPIEPD + ALL ACR++ +V++ + ++ L+E
Sbjct: 444 HYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIEL 503
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
++ V++SNIY + V +++ M D RK+PGCS+IE + V EF S +
Sbjct: 504 EPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDER 563
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
+ E I +L G+ L+S + + ++VA
Sbjct: 564 HSETESIYRVLKGLTMLLRSHGYVPNLSDVA 594
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 273/529 (51%), Gaps = 64/529 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ + QI G D + GK+I C+ S L + RL +C F++NT++
Sbjct: 18 LRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLV 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG++E +EP + A++ +M+R F+ P++++F+F+++A + L G H Q ++ G
Sbjct: 78 RGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGL 137
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN----------------- 162
ES+ FV L+ +Y C C++ ARK+FD ++++W ++I
Sbjct: 138 ESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDK 197
Query: 163 --------------GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
GY K+G++ A+++F +MP ++ VSWS MI G F E+ +F
Sbjct: 198 MLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYF 257
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
+Q G PN + G L+AC+ G+ + G+ +H +V++ G + + A+IDMY++C
Sbjct: 258 RELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRC 317
Query: 269 GCIETACSVFDSM-PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
G + A VF+ M R + ++TS+I+GLA H Q A+ LF M GV P+
Sbjct: 318 GNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISL 377
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
M +Y IEP ++HYGC+VDL GR+G L+ A + +MPI P
Sbjct: 378 LHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPP 437
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
V LL AC HG+++L ++ + L E ++ G VLLSN YA+ +W V +R+
Sbjct: 438 TAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRK 497
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL-------MEEIVLLL 465
M ++K SL+EV + +F +GE+ + ++EI+L L
Sbjct: 498 SMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRL 546
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 169/495 (34%), Positives = 265/495 (53%), Gaps = 55/495 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQI + G + +GK + F S +S+ Y +F + F WNT+IRG
Sbjct: 33 KLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRG 92
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+AE + P AF Y+QM+ S P+ +T+ F+L+A + + + G H+ IR G+ES
Sbjct: 93 YAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESL 152
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
FV N LLH+YA C + A K+F++ RD+++W S+ING+A +G+ +
Sbjct: 153 VFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPN----------- 201
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
EAL F M + G P+ +V L+A A LGAL+ GR +
Sbjct: 202 --------------------EALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRV 241
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H Y+ + G+ + + +++D+YAKCG I A VF M R+ ++TSLI GLA +
Sbjct: 242 HVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFG 301
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
A+ELF M+ +G+VP+E M E GI P ++HYGC
Sbjct: 302 EEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGC 361
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLL RAG+++ A + ++ MP++P+ + LL AC +HG + LG+ L+ H
Sbjct: 362 MVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKH 421
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G +VLLSN+YAS +W+ V+ +RR M + V+K PG SL+E+ V EF G+R++
Sbjct: 422 SGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQS 481
Query: 459 EEIVLLLFGIDKHLK 473
+++ LL I + LK
Sbjct: 482 QDVYALLEKITELLK 496
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/498 (33%), Positives = 259/498 (52%), Gaps = 56/498 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG-DLSHGYRLFVCLQYRTTFIWNTM 59
++++KQ+Q+ + D + K I FCS + + H + LF + ++NTM
Sbjct: 33 LRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTM 92
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG+A + P++AF L+ Q+L S P++YTF +L+ACA L G H I+LG
Sbjct: 93 ARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGL 152
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+V L+++Y CN ++ AR++FDK
Sbjct: 153 SENVYVCPTLINMYTACN-------------------------------EMDCARRVFDK 181
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ E V+++AMI GY + EAL F +Q +P ++ L++CA LGALD G
Sbjct: 182 IWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG 241
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+W+H YV +NG + + TA+IDMYAKCG ++ A VF++M RD A++++I A H
Sbjct: 242 KWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIH 301
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
A+ LF M+ G P+E M + YG+ PG++H
Sbjct: 302 GHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKH 361
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG LE A + + +PI P + LL+AC HG+V+LGK +E + E
Sbjct: 362 YGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELD 421
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H G +++LSN+ A +W V VR+ M + V K+PGCS +EV+ VV EF SG+ +
Sbjct: 422 DSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVH 481
Query: 456 VLMEEIVLLLFGIDKHLK 473
+ ++ L + K LK
Sbjct: 482 SVSTKLHQALDELVKELK 499
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/511 (32%), Positives = 270/511 (52%), Gaps = 57/511 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR--TTFIWNT 58
+ ++ QI +H+ G +P + K S D + + R F++NT
Sbjct: 42 LPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNT 101
Query: 59 MIRGFAEK-NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
+IR +A+ + KA ALY ML LPN +T+ F+L+ACA L +G H V++
Sbjct: 102 LIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKF 161
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G++ V N ++H+Y+ C +G I+ AR++F
Sbjct: 162 GFDCDIHVQNTMVHMYSCC------------------------------AGGINSARKVF 191
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MP+ ++V+WSAMI GY +V EA+ F MQ+ P+ +V L+AC LGAL+
Sbjct: 192 DEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALE 251
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WI AY++R+ I + + A+IDM+AKCG I A +F +M + + ++TS+I G+A
Sbjct: 252 LGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMA 311
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H + A LF M GV P++ SM + Y + P +
Sbjct: 312 MHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKI 371
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VD+ R G+++ A + VR MPIEP+ +L L++ACR HG+ LG++ + L++
Sbjct: 372 EHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMK 431
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
HE +VLLSNIYA T W K+R ME ++KVPG ++IE+D + EFV+G++
Sbjct: 432 HEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDK 491
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ +EI ++ + + +K + +EV
Sbjct: 492 SHKQHKEIYEMVDEMGREMKKSGYRPSTSEV 522
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/475 (34%), Positives = 261/475 (54%), Gaps = 55/475 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
++ G++ R+F + R WN+M G+ + + L+ +ML D + T
Sbjct: 170 ANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLV 229
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L AC + L +G + V G L G N
Sbjct: 230 SVLTACGRLADLELGEWINRYVEEKG-------LKG----------------------NP 260
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+I TSL++ YAK GQ+ AR++FD+M ++ V+WSAMI+GY Q +EAL+ F+ MQ
Sbjct: 261 TLI--TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQ 318
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
PN +V L++CA LGAL+ G+W+H ++ + ++L + LGTA++D YAKCG +E
Sbjct: 319 KANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVE 378
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
++ VF MP ++V ++T LI GLA++ Q A+E F M + V PN+
Sbjct: 379 SSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACS 438
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SMS +GIEP ++HYGC+VD+LGRAG++E A + ++ MPI+P+ +
Sbjct: 439 HAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIW 498
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
LL +C+VH +V++G+E+++ L+ H G ++LLSNIYAS +W KVR M++
Sbjct: 499 RTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEK 558
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
++K PGCSLIE+DGV+ EF + + + EEI + + K +KS + + E
Sbjct: 559 GIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAE 613
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 209/465 (44%), Gaps = 93/465 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ + +I +HL + L P ++ + + + +F + + +N MI
Sbjct: 37 IRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMI 96
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RGF K P +A L+K+M + P+ +TF IL+ C+ L G HA +++ G+
Sbjct: 97 RGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFG 156
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S+ FV N L+H+YA C ++ AR++FD R+V +W S+ GY KSG
Sbjct: 157 SHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSG------------ 204
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+W + V LF E LE R + +V LTAC L L+ G
Sbjct: 205 ------NWEEV------VKLFHEMLE-------LDIRFDEVTLVSVLTACGRLADLELGE 245
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WI+ YV+ G++ + L T+++DMYAKCG ++TA +FD M RDV A++++ISG +
Sbjct: 246 WINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQAS 305
Query: 301 QSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG---------------VQHYG 337
+ A++LF MQ + PNE S + + +E G V
Sbjct: 306 RCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGT 365
Query: 338 CLVDLLGRAGMLEAAKKVVREMP----------------------------------IEP 363
L+D + G +E++ +V +MP +EP
Sbjct: 366 ALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEP 425
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESL-----VERSLDHEGVHV 403
++ +L+AC G VD G++ S+ +E ++H G V
Sbjct: 426 NDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMV 470
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 231/397 (58%), Gaps = 25/397 (6%)
Query: 106 VGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYA 165
+G H+ ++R G S V L+ Y +C + AR +FD + ++D+ W +I+GY
Sbjct: 87 LGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYV 146
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNHAGIV 224
KSG ++ AR++FD MP +N VSW+ +I Y Q+ EA+E F MQ+ G P+ ++
Sbjct: 147 KSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALL 206
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L+AC LGA+D G W+H +V R G+ I L AIIDMY K GC+ A VF+ M +
Sbjct: 207 SVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQK 266
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---------------------- 322
V +T++I+G A H AIE+F RM++E V PN+
Sbjct: 267 SVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRWYF 326
Query: 323 --MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
M Y I+ V+HYGC+VDLLGRAG L A+ +V++MP + + + GALL A R HGD
Sbjct: 327 KIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGD 386
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+LGK+ + L+E + G ++LLSNIYA E+W+ V K+R+ M+D +R VPG S IE
Sbjct: 387 AELGKQALLHLIELEPHNSGNYILLSNIYAEQERWDDVSKLRKQMKDRGLRNVPGASSIE 446
Query: 441 VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
VDG+V EF S + ++ + +I +L I +KS+ F
Sbjct: 447 VDGMVHEFTSRDGSHPCLHKICKVLCEITTDMKSISF 483
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 33/249 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFI 94
G+L+ LF + R W T+I +A+ +P++A ++++M + P+ +
Sbjct: 149 GNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSV 208
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L AC D + +G H V+R G ++N ++ +Y C+ A ++F+ + V
Sbjct: 209 LSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQKSV 268
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
++WT++I G+A G L EA+E F M++
Sbjct: 269 VTWTTVIAGFALHG-------------------------------LGLEAIEMFRRMEME 297
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRW-IHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
PN + L+AC+ +G D GRW V + I+ + ++D+ + G +
Sbjct: 298 NVAPNDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLME 357
Query: 274 ACSVFDSMP 282
A + MP
Sbjct: 358 AQDLVQDMP 366
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 39/192 (20%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G + +F + ++ W T+I GFA ++A ++++M + PN+ TF I
Sbjct: 250 LGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAI 309
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L AC+ H + LG + +++ + + V
Sbjct: 310 LSACS-----------HVGLTDLGRWYFKIMVS-------------------QYRIKQRV 339
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMING---YVQVDLFKEALEHFNY 210
+ +++ ++G + A+ + MP K NA W A++ + +L K+AL H
Sbjct: 340 EHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGDAELGKQALLH--- 396
Query: 211 MQLCGFRPNHAG 222
L P+++G
Sbjct: 397 --LIELEPHNSG 406
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/463 (35%), Positives = 253/463 (54%), Gaps = 26/463 (5%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF-LPNNYTFSFIL 95
L +LF + R W T++ G+A P +A+ ++ +M+ + PN T
Sbjct: 181 SLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAA 240
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A L +G + H V+ G + N L+ ++ C C+ A+++FD +DV
Sbjct: 241 SAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVY 300
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWTS+++ YAK G + A ++F ++P +NAVSWS M+ Y Q +L +EA+ FN M G
Sbjct: 301 SWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAG 360
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIH-AYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P A +V L+ACA LG LD GR ++ AY+ + +EL + L A IDM+AKCG + A
Sbjct: 361 VEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAA 420
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
+F +M +++V ++ ++I A H QS A+ LF + + G+ P+E
Sbjct: 421 SRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHS 480
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M +YGIEP +HY C++DLLG+ G+LE A +V R MP+ D GA
Sbjct: 481 GLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGA 540
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LLNACR+HG+V++GK + LV G++VL+S IYAS +W V+ +R M D V
Sbjct: 541 LLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGV 600
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+K PGCS IEVDG EF++ + ++ E+I L I H K
Sbjct: 601 KKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYAALENIYLHSK 643
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 207/429 (48%), Gaps = 61/429 (14%)
Query: 12 TVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFV-CLQYRTTFIWNTMIRGFAEKNEPI 70
TVSG F +++ FC+ SD L+H + C + ++ TM+RGF +P
Sbjct: 55 TVSGLAAHRFPASRLLAFCALSDPPRLAHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPA 114
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGL 129
A AL++++LR + T F ++A +S + C A + G+ ++ N L
Sbjct: 115 HALALFRRVLRDRLPADARTIVFAVKAATTSSSPAEAIHCVA--FKRGFIGQSVLVGNAL 172
Query: 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS 189
+H+YA+ + ARKLFD +RDV+SWT+L++GYA+ G A ++F +M
Sbjct: 173 VHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM--------- 223
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
++ G G PN +V A +A +G L GR +H V +
Sbjct: 224 -VVAG--------------------GGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVES 262
Query: 250 GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
G+ + + L A++DM+ KCGC+ +A +FD MP +DV+++TS++S A +A +LF
Sbjct: 263 GVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLF 322
Query: 310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNY 366
+PN + + C+V +A + E A ++ +M +EP +
Sbjct: 323 KE------IPNRNAVS----------WSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDA 366
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHE-GVHVLLSN----IYASTEQWNGVEKV 421
L ++L+AC G +D+G+ ++ + + H+ + V LSN ++A ++
Sbjct: 367 TLVSVLSACAQLGCLDVGRCLYDAYI---VSHKVELTVNLSNAFIDMFAKCGDVGAASRL 423
Query: 422 RRGMEDNEV 430
R MED V
Sbjct: 424 FRNMEDKNV 432
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/477 (34%), Positives = 251/477 (52%), Gaps = 28/477 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++Q+ + L SG DP A + + FC A + D ++ R+ +F+WNT I
Sbjct: 45 MAHLRQLHAALVKSGLSKDPIAASRAVAFC-AGEGRDAAYAARIVRYHPRPNSFMWNTAI 103
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R ++ P A AL+ MLRS P TF + A A G H V++LG
Sbjct: 104 RALSDGPGPDAAVALFVDMLRSPTPPERRTFPSLFAAYARLGRADDGAALHGMVLKLGLA 163
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ N + +YA+ D A LF DV++ S I +++G++ AR +FD M
Sbjct: 164 GDAYTRNTTIAMYASSGRADEALALFGQCQVFDVVACNSAIVALSRAGRVDEARAVFDGM 223
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P + +WSAM++ Y + F +A++ F+ MQ+ G PN +V L CA LGAL+QG
Sbjct: 224 PSRTVATWSAMVSAYSRAARFHDAVDLFSAMQVDGVEPNANVLVSVLGCCASLGALEQGA 283
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLA 297
W+HAY+D+ + ++ ++ A++DMY KCG I A VFD+ ++ + ++ +++ GLA
Sbjct: 284 WVHAYIDKQDVGMNALVVIALVDMYCKCGSIHKARQVFDTSRSQGLAKLSSWNAMMLGLA 343
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H Q A+ LF ++ G+ P+ SM+ YG+ PG+
Sbjct: 344 AHGQCQEALALFSELESYGLRPDNVTFIAMLMAYGHSGMADEAKALFASMAREYGVTPGI 403
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVD L RAG L A+ +R MP++PD + GALL+ CR+HGD + G VE
Sbjct: 404 EHYGCLVDALARAGRLREAEDTIRAMPMKPDAAIWGALLSGCRLHGDAEAGARAARGAVE 463
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
G +VL +++ A + VR M + V KVPGCS+IEVDGVV EFVS
Sbjct: 464 CDPRDSGAYVLAASVLARDGEVGRGLGVRGKMREEGVAKVPGCSMIEVDGVVHEFVS 520
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 265/468 (56%), Gaps = 28/468 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K + +H + +GK+ F + S +GDL + +R+F + + TTF +NT+I
Sbjct: 20 MRDLKLLHAHAFRTRLHDHTVVLGKLFRFAAVSPLGDLRYAHRMFDQMPHPTTFFYNTLI 79
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A P + + M +++ P+ ++F+F+L++ + T+ L H V++ G+
Sbjct: 80 RAHAHSTTPSLSSLSFNLMRQNNVAPDQFSFNFLLKSRSRTTPLTHHNDVHGAVLKFGFC 139
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFD----MSVNRDVISWTSLINGYAKSGQISIARQM 176
+ V NGL+H YA AR++F+ + + DV+SW+ L+ + K+G++ +AR++
Sbjct: 140 RHLHVQNGLIHFYANRGMTLLARRVFEDVLQLGLEVDVVSWSGLLVAHVKAGELEVARRV 199
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD+MP+++ VSW+AM+ GY Q +EALE F M+ G P+ +V ++ACA LG +
Sbjct: 200 FDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMRRSGVWPDEVTMVSLVSACASLGDM 259
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ G +H +V+ NG + L A+IDMY KCGC+E A VF M + + + ++++
Sbjct: 260 ETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVC 319
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
AN+ + A LF M GVVP+ ESM YG+EP
Sbjct: 320 ANYGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPR 379
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYG ++D+LGRAG L+ A ++ +PI ++ V GALL ACR+HGDV++G++ ++ L+
Sbjct: 380 IEHYGAVIDMLGRAGRLQEAYDLLTNIPIPCNDAVWGALLGACRIHGDVEMGEKLIKKLL 439
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
E D G ++LL +IY + Q + R+ M + RK PGCS +E
Sbjct: 440 ELKPDEGGYYILLRDIYVAAGQTVEANETRQAMLASRARKNPGCSWVE 487
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/441 (37%), Positives = 240/441 (54%), Gaps = 57/441 (12%)
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
MIR E Y MLR+D LP+ +FS ILR+CA + +G H Q++++G
Sbjct: 1 MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+E YD +L T L++ YAK G + AR +FD
Sbjct: 61 FE-YDMILQ------------------------------TGLLDFYAKHGYVEEARNLFD 89
Query: 179 KMPEKNA--VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
M E+N+ V+W+ MI+ YVQ F A+ F MQ +P +V L+ACA LGAL
Sbjct: 90 NMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGAL 149
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D G WIH Y+ +++D++LG A+IDMY KCG +E A VF + +++F + S+I GL
Sbjct: 150 DMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGL 209
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
+ + AI F+ M+ EG+ P+ M +YG+EPG
Sbjct: 210 GMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 269
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
V+HYGC+VDLLGRAG L+ A +++R MP++P++ VLG+LL AC++H D LG++ + L+
Sbjct: 270 VEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLL 329
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E G +V LSN+YAS +W+ V R+ M V K PGCS IEV+ +V EFV+G+
Sbjct: 330 ELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGD 389
Query: 453 RTNVLMEEIVLLLFGIDKHLK 473
++ +I L I K LK
Sbjct: 390 TSHPQFTQINAFLDEIAKELK 410
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 41/252 (16%)
Query: 40 HGY-----RLFVCLQYRTT--FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
HGY LF + R + WNTMI + + E A ++++QM + P T
Sbjct: 78 HGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMV 137
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVN 151
+L ACA L +G H IR D VL N L+ +Y C ++ A +F
Sbjct: 138 SLLSACAHLGALDMGEWIHG-YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSR 196
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+++ W S+I G +G+ +EA+ F M
Sbjct: 197 KNIFCWNSIIVGLGMNGR-------------------------------GEEAIAAFIVM 225
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
+ G +P+ VG L+ C+ G L G R+ + G+E + ++D+ + G
Sbjct: 226 EKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGY 285
Query: 271 IETACSVFDSMP 282
++ A + +MP
Sbjct: 286 LKEALELIRAMP 297
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/420 (36%), Positives = 232/420 (55%), Gaps = 26/420 (6%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + + W TMI G+ N +A +Y+ MLRS N ++ AC +
Sbjct: 489 LFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNA 548
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
+ G H V++ G++ Y+F+ ++H YA C MD A F++ + SW +L++G
Sbjct: 549 IGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSG 608
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
+ K+ + AR++FD MPE++ SWS MI+GY Q D + ALE F+ M G +PN +
Sbjct: 609 FIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTM 668
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
V +A A LG L +GRW H Y+ I L+ L A+IDMYAKCG I +A F+ + +
Sbjct: 669 VSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRD 728
Query: 284 R--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------------- 320
+ V + ++I GLA+H ++ +++F MQ + PN
Sbjct: 729 KTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGR 788
Query: 321 ---ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
M Y +EP ++HYGC+VDLLGRAG+LE A++++R MP++ D + G LL ACR
Sbjct: 789 RIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRT 848
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
HGDV++G+ ESL + H G VLLSNIYA +W V VRR +++ + ++PGCS
Sbjct: 849 HGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCS 908
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 161/326 (49%), Gaps = 31/326 (9%)
Query: 27 IGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP 86
I C + G L + +LF + + + TMI G + +A ++K M +P
Sbjct: 340 IMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVP 399
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
N+ T ++ AC+ + + HA I+L E V L+ Y C+ + AR+LF
Sbjct: 400 NDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLF 459
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
D +++SW ++NGYAK+G + +AR++F+++P+K+ +SW MI+GY+ ++ EAL
Sbjct: 460 DRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALV 519
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
+ M G N +V ++AC L A+ G +H V + G + + T II YA
Sbjct: 520 MYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYA 579
Query: 267 KCGCIETAC-------------------------------SVFDSMPNRDVFAYTSLISG 295
CG ++ AC +FD MP RDVF+++++ISG
Sbjct: 580 ACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISG 639
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE 321
A DQS A+ELF +M G+ PNE
Sbjct: 640 YAQTDQSRIALELFHKMVASGIKPNE 665
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 3/233 (1%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L+ C+ +S G H+ V++LG S F+ N L+++YA + A+ LFD +
Sbjct: 279 LKYCSSSS---QGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNP 335
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
IS ++ GYAK+GQ+ AR++FD MP+K VS++ MI G VQ + F+EALE F M+
Sbjct: 336 ISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSD 395
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G PN +V + AC+ G + R IHA + +E +++ T ++ Y C + A
Sbjct: 396 GVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEA 455
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327
+FD MP ++ ++ +++G A A ELF R+ + V+ +M + Y
Sbjct: 456 RRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGY 508
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 35/261 (13%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
++F + R F W+TMI G+A+ ++ A L+ +M+ S PN T + A A
Sbjct: 620 KIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLG 679
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--DVISWTSL 160
L G H + D + L+ +YA C ++ A + F+ ++ V W ++
Sbjct: 680 TLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAI 739
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
I G A G S+ L+ F+ MQ +PN
Sbjct: 740 ICGLASHGHASM-------------------------------CLDVFSDMQRYNIKPNP 768
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFD 279
+G L+AC G ++ GR I + +E DI ++D+ + G +E A +
Sbjct: 769 ITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIR 828
Query: 280 SMPNR-DVFAYTSLISGLANH 299
SMP + D+ + +L++ H
Sbjct: 829 SMPMKADIVIWGTLLAACRTH 849
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 68/269 (25%)
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA------- 274
+V AL C+ + QGR +H+ V + G+ + + ++I+MYAK G I+ A
Sbjct: 274 ALVSALKYCS---SSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDAC 330
Query: 275 -------CSV-----------------FDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
C++ FD MP++ +YT++I GL ++ A+E+F
Sbjct: 331 PTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFK 390
Query: 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVD----------------LLGRAGMLEA--- 351
M+ +GVVPN+ + + H+G +++ +L ++ A
Sbjct: 391 DMRSDGVVPND--LTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCL 448
Query: 352 ------AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV---- 401
A+++ MP E + +LN G VD+ +E E + ++ + G
Sbjct: 449 CSGVGEARRLFDRMP-EVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDG 507
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
++L++ ++ + + + +R G+ NE+
Sbjct: 508 YILMNRLHEALVMYRAM--LRSGLALNEI 534
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 169/487 (34%), Positives = 256/487 (52%), Gaps = 61/487 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +LF + + WN MI G+A+ +A L++ M +++ PN T +L
Sbjct: 209 GYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVL 268
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA ++ L +G + + G S ++N L+ +Y+ C
Sbjct: 269 SACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC------------------- 309
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G + AR++FD M E++ +SW+ MI GY + +KEAL F M G
Sbjct: 310 ------------GDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASG 357
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P + L +CA LGA+D G+WIHAY+++N + L T++ID+YAKCG I A
Sbjct: 358 VEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAAR 417
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VFD M + + ++ ++I GLA H Q+ A ELF +M +G+ PNE
Sbjct: 418 QVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAG 477
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM + Y I P QHYGC++DLLGRAG+ E A+ +++ M ++PD + G+L
Sbjct: 478 LVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSL 537
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR HG V+LG+ E L E D+ G +VLLSNIYA +W+ V ++R + D ++
Sbjct: 538 LGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMK 597
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSL 491
KVPGC+ IEVD VV EF+ G++ + E+I +L +D+ LK F D +EV L
Sbjct: 598 KVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEV------L 651
Query: 492 LDCQKGW 498
D + W
Sbjct: 652 YDMDEEW 658
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/452 (33%), Positives = 226/452 (50%), Gaps = 61/452 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ KQI +H+ +G FA+ K+I F + S GD+S+ LF ++ FIWN+MI
Sbjct: 42 IRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMI 101
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + P A + +M+ S PN+YTF F+L++CA + G HA V++LG+
Sbjct: 102 RGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFV 161
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F+ L+++YA M+ A+ +FD S RD IS+T+LI GYA G + ARQ+FD+M
Sbjct: 162 SDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEM 221
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P K+ VSW+AMI GY Q+ KEAL F M+ PN + IV L+ACA ALD G
Sbjct: 222 PVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGN 281
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+ ++++ G+ ++ L A+IDMY+KCG ++TA +FD M RDV ++ +I G +
Sbjct: 282 SMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMC 341
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL--------------------- 339
A+ LF M GV P E I P H G +
Sbjct: 342 SYKEALALFREMLASGVEPTEIT--FLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSL 399
Query: 340 ----VDLLGRAGMLEAAKKVVREMP----------------------------------I 361
+DL + G + AA++V M I
Sbjct: 400 STSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGI 459
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
EP+ +L+AC+ G VDLG++ S+V+
Sbjct: 460 EPNEITFVGILSACKHAGLVDLGQQFFSSMVQ 491
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 244/442 (55%), Gaps = 28/442 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+L + + + WN MI G+ ++A ++++M + +T++ +L
Sbjct: 239 GELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVL 298
Query: 96 RACADTSCLFVGLICHAQVIRL-GWESYDFVL---NGLLHLYATCNCMDPARKLFDMSVN 151
ACA+ G HA ++R S DF L N L LY C +D AR++F+
Sbjct: 299 SACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPV 358
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+D++SW ++++GY +G+I A+ F++MPE+N ++W+ MI+G Q +E+L+ FN M
Sbjct: 359 KDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRM 418
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ GF P GA+ ACA+L AL GR +HA + R G + + G A+I MYAKCG +
Sbjct: 419 KSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVV 478
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
E A +F +MP D ++ ++I+ L H A A+ELF M E ++P+
Sbjct: 479 EAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTC 538
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+SMS +YGI PG HY ++DLL RAG AK ++ MP+EP +
Sbjct: 539 SHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPI 598
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
ALL CR+HG++DLG + E L E H+G +VLLSN+YA+ +W+ V KVR+ M D
Sbjct: 599 WEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRD 658
Query: 428 NEVRKVPGCSLIEVDGVVCEFV 449
V+K PGCS IEV+ V F+
Sbjct: 659 KGVKKEPGCSWIEVENKVHVFL 680
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 186/401 (46%), Gaps = 43/401 (10%)
Query: 20 PFAVGKIIGFCSASDIGDLSHGYRLFVC--LQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
P V + + S G+ + +F L R T +N MI G++ N+ A L++
Sbjct: 79 PDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFR 138
Query: 78 QMLRSDFLPNNYTFSFILRACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132
+LR+ F P+N+TF+ +L A A + C + H V++ G VLN LL +
Sbjct: 139 DLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQI----HCAVVKSGSGFVTSVLNALLSV 194
Query: 133 YATC---------NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ C + M ARKLFD RD +SWT++I GY ++G++ ARQ D M EK
Sbjct: 195 FVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEK 254
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
V+W+AMI+GYV F EALE F M L G + + L+ACA G G+ +H
Sbjct: 255 LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVH 314
Query: 244 AYV----DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
AY+ R ++ + + A+ +Y KCG ++ A VF+ MP +D+ ++ +++SG N
Sbjct: 315 AYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNA 374
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ A F M E + + ++ L + G E + K+ M
Sbjct: 375 GRIDEAKSFFEEMP----------------ERNLLTWTVMISGLAQNGFGEESLKLFNRM 418
Query: 360 P---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
EP +Y + AC + G++ LV D
Sbjct: 419 KSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFD 459
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 168/365 (46%), Gaps = 34/365 (9%)
Query: 106 VGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYA 165
+ HA +I G++ ++LN L+ +Y + + A LFD D+++ T+LI ++
Sbjct: 33 IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHS 92
Query: 166 KSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
+G ++AR++F P ++ V ++AMI GY + A+E F + GFRP++
Sbjct: 93 SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152
Query: 224 VGALTACAFLGALD-QGRWIHAYVDRNGIELDIILGTAIIDMYAKCG---------CIET 273
L A A + + Q + IH V ++G + A++ ++ KC +
Sbjct: 153 TSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAA 212
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
A +FD M RD ++T++I+G + + +A + M + VV +M G
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMIS------GY 266
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
H+G ++ LE +K+ + I+ D + ++L+AC G GK+ V + +
Sbjct: 267 VHHGFFLE------ALEMFRKMYL-LGIQWDEFTYTSVLSACANAGFFLHGKQ-VHAYIL 318
Query: 394 RSLDHEGVHVLLS-NIYASTEQWN--GVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
R+ + LS N +T W V++ R+ ++P L+ + ++ +V+
Sbjct: 319 RTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFN-----QMPVKDLVSWNAILSGYVN 373
Query: 451 GERTN 455
R +
Sbjct: 374 AGRID 378
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 267/506 (52%), Gaps = 33/506 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++I SH++ G D +I +C + I D F + R W+ MI G+
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQD---ARETFDRMSKRDVISWSAMIAGY 356
Query: 64 AE-----KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
A+ K + F L ++M R PN TF IL+AC+ L G HA++ ++G
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVG 416
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ES + + ++YA C + A ++F N++V++W SL+ Y K G ++ A ++F
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFS 476
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M +N VSW+ MI GY Q + E + M++ GF+P+ I+ L AC L AL++
Sbjct: 477 EMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALER 536
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+ +HA + G+E D ++ T++I MY+KCG + A +VFD + NRD A+ ++++G
Sbjct: 537 GKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQ 596
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H A++LF RM E V PNE M E + ++PG Q
Sbjct: 597 HGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQ 656
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGRAG L+ A++ ++ MP EPD V ALL AC+ H +V L + ++
Sbjct: 657 HYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRL 716
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ V+V LSNIYA +W+ KVR+ M+D ++K G S IE+DG + FV+ +
Sbjct: 717 EPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCA 776
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDD 480
+ ++ I L + K +K + D
Sbjct: 777 HPEIDSIHAELEMLTKEMKEAGYTPD 802
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/427 (27%), Positives = 187/427 (43%), Gaps = 73/427 (17%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K + L G D + +I F S GD++ ++F + R W++MI +A
Sbjct: 98 KMVHKQLDELGLAIDIYLGNSLINF--YSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYA 155
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
N P KAF +++M ++ PN TF IL+AC + S L H V G E+
Sbjct: 156 GNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMET--- 212
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
DV T+LI Y+K G+IS+A ++F KM E+N
Sbjct: 213 ----------------------------DVAVATALITMYSKCGEISLACEIFQKMKERN 244
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+A+I Q EA E + M G PN V L +C AL++GR IH+
Sbjct: 245 VVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS 304
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
++ G+E D+++ A+I MY KC CI+ A FD M RDV +++++I+G A
Sbjct: 305 HISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ------ 358
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
G ES+ E++ L++ + R G+ P+
Sbjct: 359 ----------SGYQDKESLDEVFQ----------LLERMRREGVF-------------PN 385
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHE-GVHVLLSNIYASTEQWNGVEKVRR 423
++L AC VHG ++ G++ + + + + + + N+YA E+V
Sbjct: 386 KVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFS 445
Query: 424 GMEDNEV 430
ME+ V
Sbjct: 446 KMENKNV 452
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 182/404 (45%), Gaps = 47/404 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ ++I + + SG D +I S G++S +F ++ R W +I
Sbjct: 195 LEKAREIHTVVKASGMETDVAVATALITM--YSKCGEISLACEIFQKMKERNVVSWTAII 252
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ A+ + +AF LY++ML++ PN TF +L +C L G H+ + G E
Sbjct: 253 QANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE 312
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ V N L+ +Y CNC+ AR+ FD RDVISW+++I GYA+S
Sbjct: 313 TDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS------------- 359
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
GY + E + M+ G PN + L AC+ GAL+QGR
Sbjct: 360 -------------GYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGR 406
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IHA + + G E D L TAI +MYAKCG I A VF M N++V A+ SL++
Sbjct: 407 QIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCG 466
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
SA ++F M VV + ++ ++G + +++ M
Sbjct: 467 DLTSAEKVFSEMSTRNVVS----------------WNLMIAGYAQSGDIAKVFELLSSMK 510
Query: 361 IE---PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
+E PD + ++L AC ++ GK V+ L+ + V
Sbjct: 511 VEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTV 554
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 113/254 (44%), Gaps = 34/254 (13%)
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
E I+ + KQ L N+ T+ I+ CA G + H Q+ LG ++
Sbjct: 60 KEAIQLLGIIKQ---RGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N L++ Y+ + ++F RDV++W+S+I YA + + A F++M + N
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN-- 174
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
PN + L AC L++ R IH V
Sbjct: 175 -----------------------------IEPNRITFLSILKACNNYSMLEKAREIHTVV 205
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
+G+E D+ + TA+I MY+KCG I AC +F M R+V ++T++I A H + A
Sbjct: 206 KASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAF 265
Query: 307 ELFMRMQLEGVVPN 320
EL+ +M G+ PN
Sbjct: 266 ELYEKMLQAGISPN 279
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
KEA++ ++ G N + CA L + G+ +H +D G+ +DI LG +
Sbjct: 59 LKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNS 118
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+I+ Y+K G + + VF M RDV ++S+I+ A ++ A A + F RM+ + PN
Sbjct: 119 LINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPN 178
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK---VVREMPIEPDNYVLGALLNACRV 377
I +Y MLE A++ VV+ +E D V AL+
Sbjct: 179 RIT--FLSILKACNNY----------SMLEKAREIHTVVKASGMETDVAVATALITMYSK 226
Query: 378 HGDVDLGKETVESLVERSL 396
G++ L E + + ER++
Sbjct: 227 CGEISLACEIFQKMKERNV 245
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 169/490 (34%), Positives = 265/490 (54%), Gaps = 31/490 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ ++Q Q + G D + + I + SAS +G S+ Y +F+ + F +N +I
Sbjct: 43 LSHLQQTQGFMLTRGLDQDDILLARFI-YTSAS-LGLSSYAYSVFISNHRPSIFFYNNVI 100
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ N P +A +L+ + P++Y+F F+L+A S + VG H Q I G +
Sbjct: 101 WALSSSN-PTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLD 159
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S+ V+ L+ +Y++C + ARKLFD + + W +++ GYAK G +S AR +F+ M
Sbjct: 160 SHPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECM 219
Query: 181 PEKN--AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
PEK+ VSW+ +I+GY Q EA+ F M L +P+ I+ L+ACA LGAL
Sbjct: 220 PEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQL 279
Query: 239 GRWIHAYVDR--NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G WIH Y+++ N + + L ++IDMYAK G I A +F +M ++ + +T++ISGL
Sbjct: 280 GEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGL 339
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A H A+++F M+ V PNE SM YGIEP
Sbjct: 340 ALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPK 399
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC++DLLGRAG L+ A ++VR MP E + V G+LL+A +GD L E + L
Sbjct: 400 IEHYGCMIDLLGRAGYLQEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALRHLS 459
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+ G + LLSN YA+ W VR+ M D KVPG S +E++ V EF++G+
Sbjct: 460 VLEPHNCGNYSLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNNRVYEFIAGD 519
Query: 453 RTNVLMEEIV 462
+ N+ +++
Sbjct: 520 KLNICFLDVL 529
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 171/490 (34%), Positives = 265/490 (54%), Gaps = 59/490 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML--RSD 83
+ F + S GDL++ + + L + +F NTMIR +++ +P +A L+ ML +
Sbjct: 32 LFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTS 91
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
P+ +T+ F+L++CA VG H + + G ES +V NGL+H+Y++C A
Sbjct: 92 PRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAY 151
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K+F +RDV+SWTS+I+G+ + A ++F++M E
Sbjct: 152 KVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVED-------------------- 191
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
G PN A +V L ACA GA+ GR + ++ I L+ + TA+ID
Sbjct: 192 -----------GVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALID 240
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG I +A VFD + N+DVFA+T++ISGLANH A+ LF +M+ G+ P+E
Sbjct: 241 MYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERT 300
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM YGI+P +QHYGC+VDLL R G L+ A++ +R+M
Sbjct: 301 MTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKM 360
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVES--LVERSLDHEGVHVLLSNIYASTEQWNG 417
PIEPD + L+ A +VHGD+D ++ ++ L++ D G +VLL N+YAS +W+
Sbjct: 361 PIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHD 420
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
K+R M + K PGCS IEVDG+V EF +G+ ++ E+I L +++ LK+ +
Sbjct: 421 KAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGY 480
Query: 478 FDDGNEVATE 487
+EV E
Sbjct: 481 HPKLSEVLLE 490
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 39/293 (13%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ + SG D + +I S+ G Y++F ++ R W +MI GF
Sbjct: 116 KQLHGLIYKSGLESDRYVSNGLIHMYSS--CGKSGRAYKVFGKMRDRDVVSWTSMIDGFV 173
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV--IRLGWESY 122
+ + ++A L+++M+ PN T +LRACAD + +G + ++G E+
Sbjct: 174 DDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEAN 233
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
V L+ +YA C + ARK+FD VN+DV +WT++I+G A G
Sbjct: 234 --VRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHG-------------- 277
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RW 241
L +EA+ F+ M+ G RP+ + L+AC G +G +
Sbjct: 278 -----------------LCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAY 320
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLI 293
++ + GI+ I ++D+ A+ G ++ A MP DV + +LI
Sbjct: 321 FNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLI 373
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 169/489 (34%), Positives = 263/489 (53%), Gaps = 28/489 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ QIKQ+ + + ++G + + K+I + +I + +F + Y F++N +I
Sbjct: 59 LTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALI 118
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+ + ++ Y M + +P ++TF+ + +AC + +G H Q I +G
Sbjct: 119 RGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGF 178
Query: 121 SYDF-VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
D V N ++ +Y C ++ RK+FD NRDVISWT LI+ Y KSG + A ++FD
Sbjct: 179 GEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDG 238
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ V+W+ M++G+ Q +EA+ F MQ G + ++G ++ACA LGA
Sbjct: 239 LPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYA 298
Query: 240 RWIHAYVDRN--GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
WI +++ G + +++G+A+IDMY+KCG + A VF M R+V++Y+S+I G A
Sbjct: 299 DWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFA 358
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H + A++LF M + PN E M + YGI+P
Sbjct: 359 MHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSA 418
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
HY C+VDLLGRAG L+ A ++V+ MPIEP V GALL ACR+H D+ L E
Sbjct: 419 DHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFE 478
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD-GVVCEFVSGE 452
G ++LL+NIYAS +WN V VR+ M +RK P S IE + G+V EF SG+
Sbjct: 479 LEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGD 538
Query: 453 RTNVLMEEI 461
T+ EI
Sbjct: 539 MTHPRSGEI 547
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 174/505 (34%), Positives = 268/505 (53%), Gaps = 66/505 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
++QIKQ+ + + + G L D A+ ++I F SA + G +H +F + + F++NT+
Sbjct: 21 LRQIKQVHALMVLQGFLSDSSALRELI-FASAVGVRGGTAHARLVFDRIPHPDRFMYNTL 79
Query: 60 IRGFAEKNEPIKAFALYKQMLRSD-------FLPNNYTFSFILRACADTSCLFVGLICHA 112
IRG A + P A ++Y +M R P+ TF F+LRACA G HA
Sbjct: 80 IRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHA 139
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPA------------------------------ 142
V++ G ES FV N L+ ++AT + A
Sbjct: 140 HVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGA 199
Query: 143 -RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
R+LFD S +D++SW +I YAK G ++ AR++FD P+++ VSW+AMI+GYV+
Sbjct: 200 ARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSR 259
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGT 259
K+A+E F MQ G +P+ ++ L+ACA G LD GR +H ++ + I LG
Sbjct: 260 KQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGN 319
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
A+IDMYAKCG + +A VF M +++V + S+I GLA H + +I +F +M V P
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKP 379
Query: 320 NES------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+E M + Y IEP ++HYGC+VD+L R G+L+ A +
Sbjct: 380 DEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEF 439
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
+ M IEP+ + LL ACR+HG+++L + L++ D G VLLSNIYAS +W
Sbjct: 440 IGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEW 499
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIE 440
G E +R+ M+D+ V K G ++I+
Sbjct: 500 PGSENMRKLMDDSGVNKEAGRAVID 524
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 174/505 (34%), Positives = 268/505 (53%), Gaps = 66/505 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
++QIKQ+ + + + G L D A+ ++I F SA + G +H +F + + F++NT+
Sbjct: 21 LRQIKQVHALMVLQGFLSDSSALRELI-FASAVGVRGGTAHARLVFDRIPHPDRFMYNTL 79
Query: 60 IRGFAEKNEPIKAFALYKQMLRSD-------FLPNNYTFSFILRACADTSCLFVGLICHA 112
IRG A + P A ++Y +M R P+ TF F+LRACA G HA
Sbjct: 80 IRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQVHA 139
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPA------------------------------ 142
V++ G ES FV N L+ ++AT + A
Sbjct: 140 HVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGA 199
Query: 143 -RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
R+LFD S +D++SW +I YAK G ++ AR++FD P+++ VSW+AMI+GYV+
Sbjct: 200 ARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSR 259
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGT 259
K+A+E F MQ G +P+ ++ L+ACA G LD GR +H ++ + I LG
Sbjct: 260 KQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGN 319
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
A+IDMYAKCG + +A VF M +++V + S+I GLA H + +I +F +M V P
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKP 379
Query: 320 NES------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+E M + Y IEP ++HYGC+VD+L R G+L+ A +
Sbjct: 380 DEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEF 439
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
+ M IEP+ + LL ACR+HG+++L + L++ D G VLLSNIYAS +W
Sbjct: 440 IGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEW 499
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIE 440
G E +R+ M+D+ V K G ++I+
Sbjct: 500 PGSENMRKLMDDSGVNKEAGRAVID 524
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 176/518 (33%), Positives = 261/518 (50%), Gaps = 61/518 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+++QI L V + I CS+ + + + +F + + ++++N +IRG
Sbjct: 57 KLRQIHGQLYRCNVFSSSRVVTQFISSCSS--LNSVDYAISIFQRFELKNSYLFNALIRG 114
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
AE + + + + ML+ P+ TF F+L++ A S VG H +++ G E
Sbjct: 115 LAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFD 174
Query: 123 DFV-----------------------------------LNGLLHLYATCNCMDPARKLFD 147
FV N L+H Y + A +LFD
Sbjct: 175 SFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFD 234
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+D SW SLING+ K G + A+++F KMPEKN VSW+ M+NG+ Q ++ALE
Sbjct: 235 SMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALET 294
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F M G RPN IV AL+ACA +GALD G IH Y+ NG +L++++GTA++DMYAK
Sbjct: 295 FFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAK 354
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
CG IE A VF + + ++ +I G A H A++ F M+ G P+
Sbjct: 355 CGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAV 414
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
++M Y IEP ++HY +VD+LGRAG L+ A K +R MPI P
Sbjct: 415 LNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITP 474
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
D V GAL ACR H +V++ + + L++ H G +V LSN YAS +W+ E+VR
Sbjct: 475 DFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRV 534
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
M D+ K PG S IEVD + FV+G+ T+ EI
Sbjct: 535 SMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEI 572
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 233/376 (61%), Gaps = 28/376 (7%)
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
F+ N +L Y + + + ARK+FD RD++SW ++I+GYA G++ +AR++FD ++
Sbjct: 24 FLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDR 83
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+A SWS+MI+ Y + KEALE + M P+ +V ++AC+ LGAL G +H
Sbjct: 84 DAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVH 143
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+V+ N IELD+ LGTA+IDMYAKCG IE+A VFD MP +DV ++S+I GLANH
Sbjct: 144 RFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGH 203
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
++ LF +M EG+ PN SM+E++GIEP V+HYGC+
Sbjct: 204 ESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCM 263
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH- 398
VDLLGR+G +E A++++R M EPD + ALL ACR+H +V++ +E + L R LD
Sbjct: 264 VDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKL--RVLDPL 321
Query: 399 -EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+G +VLLSNIYA W GV ++R+ + + ++++PG S IE D + EFVSG+R +
Sbjct: 322 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 381
Query: 458 MEEIVLLLFGIDKHLK 473
+EI +L + LK
Sbjct: 382 SKEIYRVLEEMMDRLK 397
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 149/372 (40%), Gaps = 88/372 (23%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEP---------------- 69
+ + S S++ + ++F + R WNTMI G+A + E
Sbjct: 30 LAAYVSRSEVAE---ARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAF 86
Query: 70 -----IKAFA----------LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
I A+A L+++M + +P+ T ++ AC+D L VG H +
Sbjct: 87 SWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVH-RF 145
Query: 115 IRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+ D L L+ +YA C ++ A+++FD +DV +W+S+I G A G
Sbjct: 146 VESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHG----- 200
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
L E+L F+ M G +PN VG L AC +
Sbjct: 201 --------------------------LGHESLSLFSKMISEGMKPNGVTFVGVLIACTHV 234
Query: 234 GALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTS 291
G + +G ++ + + +GIE + ++D+ + G +E A + SM D + +
Sbjct: 235 GLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRA 294
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRA---- 346
L+ H + E+M+++ ++P G HY L ++ +A
Sbjct: 295 LLGACRIHKNVE--------------IAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWE 340
Query: 347 GMLEAAKKVVRE 358
G+ E K + R+
Sbjct: 341 GVAEMRKTIRRD 352
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 171/487 (35%), Positives = 255/487 (52%), Gaps = 62/487 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S + D RLF + + WN MI G+ + +A A + +M +D
Sbjct: 200 ITGYVSEGHVDD---ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVS 256
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
PN T +L AC L +G + V G+ ++N L+ +Y+ C
Sbjct: 257 PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKC--------- 307
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G+I AR++FD M +K+ + W+ MI GY + L++EAL
Sbjct: 308 ----------------------GEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEAL 345
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN----GIELDIILGTAI 261
F M PN + L ACA LGALD G+W+HAY+D+N G ++ L T+I
Sbjct: 346 VLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSI 405
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
I MYAKCGC+E A VF SM +R + ++ ++ISGLA + + A+ LF M EG P++
Sbjct: 406 IVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDD 465
Query: 322 ------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
SM++ YGI P +QHYGC++DLL R+G + AK ++
Sbjct: 466 ITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMG 525
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
M +EPD + G+LLNACR+HG V+ G+ E L E ++ G +VLLSNIYA +W+
Sbjct: 526 NMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDD 585
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
V K+R + D ++KVPGC+ IE+DGVV EF+ G++ + E I +L +D+ L+ F
Sbjct: 586 VAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGF 645
Query: 478 FDDGNEV 484
D +EV
Sbjct: 646 VPDTSEV 652
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 180/323 (55%), Gaps = 2/323 (0%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTT--FIWNT 58
+ +KQI S + SG FA K+I FC+ S DLS+ LF + ++ FIWNT
Sbjct: 38 IPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNT 97
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IR + P + L+ QML S PN++TF + ++CA + HA ++L
Sbjct: 98 LIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLA 157
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ V L+H+Y+ + AR +FD S RD +S+T+LI GY G + AR++FD
Sbjct: 158 LHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFD 217
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
++P K+ VSW+AMI GYVQ F+EAL F MQ PN + +V L+AC L +L+
Sbjct: 218 EIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLEL 277
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+WI ++V G ++ L A++DMY+KCG I TA +FD M ++DV + ++I G +
Sbjct: 278 GKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCH 337
Query: 299 HDQSASAIELFMRMQLEGVVPNE 321
A+ LF M E V PN+
Sbjct: 338 LSLYEEALVLFEVMLRENVTPND 360
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 115/272 (42%), Gaps = 22/272 (8%)
Query: 165 AKSGQISIARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
+ S +S A +F + + N W+ +I + +L F+ M G PN
Sbjct: 70 SPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHT 129
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+CA A + + +HA+ + + L + T++I MY++ G + A VFD
Sbjct: 130 FPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKST 189
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342
RD ++T+LI+G + A LF + + VV +M Y VQ
Sbjct: 190 LRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGY-----VQS------- 237
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402
GR A ++E + P+ + ++L+AC ++LGK + +R G +
Sbjct: 238 -GRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGF---GKN 293
Query: 403 VLLSN----IYASTEQWNGVEKVRRGMEDNEV 430
+ L N +Y+ + K+ GMED +V
Sbjct: 294 LQLVNALVDMYSKCGEIGTARKLFDGMEDKDV 325
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 269/494 (54%), Gaps = 26/494 (5%)
Query: 15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFA 74
TL DPF ++ +A G +++ +F + R WNTMI + +AF
Sbjct: 144 ATLSDPFVETGLMDMYAAC--GRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFK 201
Query: 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA 134
L+++M S+ +P+ I+ AC T + + +I +L L+ +YA
Sbjct: 202 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYA 261
Query: 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
CMD A + F R++ T++++GY+K+G++ AR +FD+ K+ V W+ MI+
Sbjct: 262 GAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISA 321
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254
Y + D +EAL F M G +P+ ++ ++AC LG LD+ +W+H Y NG+E
Sbjct: 322 YAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESV 381
Query: 255 IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314
+ + A+I+MYAKCG ++ A VF+ MP R+V +++S+I+ A H +++ ++ LF +M+
Sbjct: 382 LPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQ 441
Query: 315 EGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
E V PNE SM++ Y I P ++HYGC+VDL GRA +L
Sbjct: 442 ENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLR 501
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A +V+ MP+ P+ + G+L++ACRVHG+++LG+ + +++ DH+G VL+SNIYA
Sbjct: 502 EALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYA 561
Query: 411 STEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDK 470
+W+ V +R ME +V K G S I+++G EF+ G++ + EI L+ +
Sbjct: 562 REYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVS 621
Query: 471 HLKSLCFFDDGNEV 484
LK + DG V
Sbjct: 622 KLKLAGYVPDGGSV 635
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 158/366 (43%), Gaps = 53/366 (14%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
+ ++N+++R + EP Y+++ + +F IL+A + S LF G+ H
Sbjct: 79 SIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHG 138
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++ S FV GL+ +YA C G+I+
Sbjct: 139 FAFKIATLSDPFVETGLMDMYAAC-------------------------------GRINY 167
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR +FD+M +++ V+W+ MI Y + L EA + F M+ P+ + ++AC
Sbjct: 168 ARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGR 227
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
G + R I+ ++ N + +D L TA++ MYA GC++ A F M R++F T++
Sbjct: 228 TGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAM 287
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY-------------------GIEPGV 333
+SG + + A +F + +++ +V +M Y GI+P V
Sbjct: 288 VSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDV 347
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL---GALLNACRVHGDVDLGKETVES 390
++ G L+ AK V R + VL AL+N G +D ++ E
Sbjct: 348 VTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEK 407
Query: 391 LVERSL 396
+ R++
Sbjct: 408 MPTRNV 413
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 232/403 (57%), Gaps = 24/403 (5%)
Query: 83 DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
D LP+ +T SF+L+AC S + G H +LG+ S F+ N +L+LY C M A
Sbjct: 5 DVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDA 64
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
LF+ RD ++W +I AK G I A F +MP KN SW++MI+G+VQ
Sbjct: 65 MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EA++ F ++ RPN +V L ACA LG LD GR +H Y ++G + ++ + +I
Sbjct: 125 EAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLI 184
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-- 320
DMY KCGC+E A VF M R V +++++I+GLA H Q+ A+ LF M GV PN
Sbjct: 185 DMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGV 244
Query: 321 ----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
SM+ YG+ P ++HYGC+VDL RAG+LE A + +
Sbjct: 245 TFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILS 304
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
MPI+P+ V GALL C+VH ++DL +E ++ L E ++G +V++SNIYA E+W
Sbjct: 305 MPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDA 364
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VR+ M+D V+K G S I V+GVV EFV+G++T+ E+I
Sbjct: 365 ARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDI 407
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 33/266 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ Y F+ + + W +MI GF + +P +A L+ ++ PN T +L
Sbjct: 90 GDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVL 149
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACAD L +G I H + G++ V N L+ +Y C C++ AR++F R V+
Sbjct: 150 AACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVV 209
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW+++I G A GQ +EAL F+ M G
Sbjct: 210 SWSAMIAGLAMHGQA-------------------------------EEALCLFSEMIKLG 238
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETA 274
+PN +G L AC+ +G +D+GR A + + G+ I ++D++++ G +E A
Sbjct: 239 VKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEA 298
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANH 299
SMP + + + +L+ G H
Sbjct: 299 HEFILSMPIKPNGVVWGALLGGCKVH 324
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 169/421 (40%), Positives = 244/421 (57%), Gaps = 33/421 (7%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLLHLYATCNCMDPARK 144
P++ TF F+ RA A + + HAQ +R G +D V N L+H+YA C AR+
Sbjct: 60 PSHLTFPFLARAAARLATPRLARAVHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLARR 119
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
LFD + +SW +L++GYAK + AR++F +MP+++ VSWSAMI+G V+ +EA
Sbjct: 120 LFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREA 179
Query: 205 LEHFNYMQLC-----GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
L F M+ G R N +V L ACA LG L +GR +H Y++ +G L+I L T
Sbjct: 180 LAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLAT 239
Query: 260 AIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+++DMYAKCG I A VF ++P N DV + ++I GLA H S ++++F +M+ GV
Sbjct: 240 SLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGV 299
Query: 318 VPNE-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
VP+E E G+ P V+HY CLVD+LGRAG LE A
Sbjct: 300 VPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVDVLGRAGRLEEAYG 359
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
VV+ MP++P VLGALLNAC +HG V+LG+ LV DH+G ++ LSNIYA +
Sbjct: 360 VVKSMPMKPSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARR 419
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI--VLLLFGIDKHL 472
W +K R+ ME+ V+KVPG S I+V +C F++ ++T+ EI +L L +D +
Sbjct: 420 WQEAKKARKVMEERGVKKVPGFSEIDVGRGICRFIAQDKTHPGSAEIYALLKLIAMDMKM 479
Query: 473 K 473
K
Sbjct: 480 K 480
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 107/255 (41%), Gaps = 38/255 (14%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM----LRSDFL-PNNYTF 91
DL R+F + R W+ MI G + E +A A+++ M R D + N+ T
Sbjct: 144 DLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTM 203
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
+L ACA L G H + E + F LN L
Sbjct: 204 VSVLGACAHLGDLVRGRKMHRYL-----EEHGFPLNIRL--------------------- 237
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNA--VSWSAMINGYVQVDLFKEALEHFN 209
TSL++ YAK G I A ++F +P +N + W+A+I G + +E+L+ F
Sbjct: 238 -----ATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQ 292
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ G P+ + L+AC G +D+ ++ G+ + ++D+ + G
Sbjct: 293 KMEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVDVLGRAG 352
Query: 270 CIETACSVFDSMPNR 284
+E A V SMP +
Sbjct: 353 RLEEAYGVVKSMPMK 367
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 241/433 (55%), Gaps = 28/433 (6%)
Query: 31 SASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90
S S + DL+ LF + + W T+I G+ + +A +Y+ MLR+ PN
Sbjct: 261 SKSGLVDLARD--LFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVM 318
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
++ AC T + G H ++R G++ YDF+ ++H YA C ++ A F++
Sbjct: 319 IVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGS 378
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
V SW +LI+G+ ++G I ARQ+FD+MPE++ SWS+MI+GY Q + AL+ F+
Sbjct: 379 KDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHE 438
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M G +PN +V +A A LG L +GRW H Y+ N I L+ L A+IDMYAKCG
Sbjct: 439 MVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGS 498
Query: 271 IETACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
I A +F + +R V + ++I GLA H + +++LF ++Q + PN
Sbjct: 499 ITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVL 558
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+ M +Y IEP ++HYGC++DLLGRAG L+ A +++R+MP++ D
Sbjct: 559 SACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKAD 618
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ G LL ACR HG+V++G+ E+L + + H VLLSNIYA +W+ VRR
Sbjct: 619 VVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRA 678
Query: 425 MEDNEVRKVPGCS 437
M+ ++K PGCS
Sbjct: 679 MQSQRMKKSPGCS 691
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 31/317 (9%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L + LF + + + TM+ G A+ N ++A ++K M + +PN T + ++
Sbjct: 132 GSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVI 191
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A + + + HA +LG E+ + V L+H+Y C+ + AR LFD R+V+
Sbjct: 192 SAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVV 251
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++NGY+KSG + +AR +F+++P K+ VSW +I+GYVQ++ EAL + M G
Sbjct: 252 TWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTG 311
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC------- 268
PN IV ++AC A+ +G+ H + R G + + II YA C
Sbjct: 312 VGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAF 371
Query: 269 ------------------------GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
G IE A +FD MP RDVF+++S+ISG + ++Q
Sbjct: 372 LQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDL 431
Query: 305 AIELFMRMQLEGVVPNE 321
A++LF M GV PNE
Sbjct: 432 ALQLFHEMVAGGVQPNE 448
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 154/331 (46%), Gaps = 20/331 (6%)
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T L++C+ L G H+ V + G S FV N L+ Y C + AR LFD
Sbjct: 54 TLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTC 113
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
D +S ++ GY KSG + AR +F+KMP K VS++ M+ G Q + + EA+ F
Sbjct: 114 SVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFK 173
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ G PN + ++A + +G + R +HA + G+E I+ T ++ MY C
Sbjct: 174 DMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCS 233
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329
+ A +FD +P R+V + +++G + A +LF R+ + VV
Sbjct: 234 SLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVS---------- 283
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKE 386
+G ++D + L A ++ R M + P+ ++ L++AC V G++
Sbjct: 284 ------WGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQ 337
Query: 387 TVESLVERSLD-HEGVHVLLSNIYASTEQWN 416
+V D ++ + + + YA+ + N
Sbjct: 338 FHGIIVRTGFDCYDFIQATIIHFYAACGEIN 368
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 231/375 (61%), Gaps = 24/375 (6%)
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
F ++H +A + A++LFD + ++S T+++ YAK G++ AR +FD M E+
Sbjct: 94 FFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER 153
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ V W+ MI+GY Q + EAL F M +PN ++ L+AC LGAL+ GRW+H
Sbjct: 154 DGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVH 213
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+Y++ NGI+ ++ +GTA++DMY+KCG +E A VFD + ++DV A+ S+I G A H S
Sbjct: 214 SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQ 273
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
A++LF M G+ P M + YGIEP ++HYGC+
Sbjct: 274 EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCM 333
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
V+LLGRAG +E A ++V+ M IEPD + G LL ACR+HG + LG++ VE LV+++L +
Sbjct: 334 VNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANS 393
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G ++LLSNIYA+ W+GV ++R M+D+ V+K PGCS IEV+ V EF++G + +
Sbjct: 394 GTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRK 453
Query: 460 EIVLLLFGIDKHLKS 474
EI ++L I+ LKS
Sbjct: 454 EIYMMLEEINGWLKS 468
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 34/248 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+L LF ++ R WN MI G+ + P +A L+++ML++ PN T +L
Sbjct: 138 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVL 197
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC L G H+ + G + V L+ +Y+ C ++ AR +FD ++DV+
Sbjct: 198 SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVV 257
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W S+I GYA ++G+ Q EAL+ F M G
Sbjct: 258 AWNSMIVGYA--------------------------MHGFSQ-----EALQLFKSMCRMG 286
Query: 216 FRPNHAGIVGALTACAFLGALDQGRW--IHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P + +G L+AC G + +G W + D GIE I ++++ + G +E
Sbjct: 287 LHPTNITFIGILSACGHSGWVTEG-WDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQ 345
Query: 274 ACSVFDSM 281
A + +M
Sbjct: 346 AYELVKNM 353
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G L +F + + WN+MI G+A +A L+K M R P N TF
Sbjct: 236 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFI 295
Query: 93 FILRACADTSCLFVGL-ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSV 150
IL AC + + G I + G E +++L ++ A +L +M++
Sbjct: 296 GILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI 355
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
D + W +L+ G+I++ ++ + + ++N
Sbjct: 356 EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 389
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IHA + R+G++ IL + YA G ++ + ++F N VF +T++I G A
Sbjct: 49 IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD 108
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYG----------IEPGVQH-----YGCLVDLLGRA 346
SA +LF M + +V +M Y + G++ + ++D +
Sbjct: 109 VVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN 168
Query: 347 GMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403
GM A + R M +P+ + ++L+AC G ++ G+ V S +E + VHV
Sbjct: 169 GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR-WVHSYIENNGIQFNVHV 227
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 170/487 (34%), Positives = 263/487 (54%), Gaps = 46/487 (9%)
Query: 36 GDLSHGYRL--FVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
D+SH Y L F C + F N ++R P++ L+ ++ R N ++F+F
Sbjct: 75 ADVSHSYPLLLFRCSNCTSAFASNHLLRVLPHP-LPLR---LFPRLPRR----NPHSFTF 126
Query: 94 ILR-----------ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
+L A + F+G HA ++ G +V N +H Y C +
Sbjct: 127 LLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAM 186
Query: 143 RKLFD-MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
RK+FD + + RDV++W +++ GY ++G + +AR++FD MP ++ VSWS +I GYV+
Sbjct: 187 RKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEP 246
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
+ AL F M G + N A IV AL+A A LG L+QG+++H V R G+ + + LG A+
Sbjct: 247 EVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAAL 306
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
IDMY+KCG + A VFD+MP RDVFA+ S+I GLA H A++LF + EG P
Sbjct: 307 IDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTS 366
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
+ M+E Y IE ++HYGC+VDLL RAG+++ A +++
Sbjct: 367 ITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE 426
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
M I PD + G +L+AC+ HG VDLG L+E H+G +VLL++IYA ++W+
Sbjct: 427 GMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDE 486
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
V KVR+ M + K G SL+E G+V +F+ G+ + I +L I++ L +
Sbjct: 487 VRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGY 546
Query: 478 FDDGNEV 484
D + V
Sbjct: 547 VPDVSSV 553
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G ++ +F + R F WN+MI G A A L+++ + F P + TF
Sbjct: 311 SKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFV 370
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFV-----LNGLLHLYATCNCMDPARKLFD 147
+L AC+ T + G + +L E YD ++ L + + A +L +
Sbjct: 371 GVLNACSRTGLVDEG----RRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE 426
Query: 148 -MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
M + D + W ++++ + G + + + +K+ E
Sbjct: 427 GMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIE 462
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 264/456 (57%), Gaps = 28/456 (6%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
D+ + Y+ L + WN +IRGF+ P K+ ++Y QMLR LP++ T+ F+++
Sbjct: 803 DVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMK 862
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
+ + S +G H V++ G E F+ N L+H+Y + ARKLFD ++++++
Sbjct: 863 SSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVT 922
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG- 215
W S+++ YAKSG + AR +FD+M E++ V+WS+MI+GYV+ + +ALE F+ M G
Sbjct: 923 WNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGS 982
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ N +V + ACA LGAL++G+ +H Y+ + L +IL T++IDMYAKCG I A
Sbjct: 983 SKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAW 1042
Query: 276 SVF--DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
SVF S+ D + ++I GLA+H +++LF +M+ + P+E
Sbjct: 1043 SVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSH 1102
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
S+ E G EP +HY C+VD+L RAG+++ A + EMPI+P +LG
Sbjct: 1103 GGLVKEAWHFFKSLKE-SGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLG 1161
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
ALLN C HG+++L + + L+E ++G +V L+N+YA +Q+ +R ME
Sbjct: 1162 ALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKG 1221
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
V+K+ G S++++DG F++ ++T+ ++I +L
Sbjct: 1222 VKKIAGHSILDLDGTRHRFIAHDKTHFHSDKIYAVL 1257
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 35/268 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFI 94
GD+ +F + R W++MI G+ ++ E KA ++ QM+R N T +
Sbjct: 934 GDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSV 993
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+ ACA L G H R + D+ + V
Sbjct: 994 ICACAHLGALNRGKTVH-------------------------------RYILDVHLPLTV 1022
Query: 155 ISWTSLINGYAKSGQISIARQMFDK--MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
I TSLI+ YAK G I A +F + + E +A+ W+A+I G +E+L+ F+ M+
Sbjct: 1023 ILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMR 1082
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
P+ + L AC+ G + + + +G E ++D+ ++ G ++
Sbjct: 1083 ESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVK 1142
Query: 273 TACSVFDSMPNRDVFAYT-SLISGLANH 299
A MP + + +L++G NH
Sbjct: 1143 DAHDFISEMPIKPTGSMLGALLNGCINH 1170
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 124/312 (39%), Gaps = 16/312 (5%)
Query: 26 IIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84
I G+C +I LS R++ + + ++I G P +A + +M D
Sbjct: 656 IDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDC 715
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA-- 142
PN TF +++ L+ ++ E V L+ + + ++
Sbjct: 716 YPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFG 775
Query: 143 -------RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY 195
+ F +SV+R+ + ++ + + A + K+ + W+ +I G+
Sbjct: 776 IFREMVHKGRFPVSVDRNYMLAVNV------TSDVDYAYKFLSKLSDPPNYGWNFVIRGF 829
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
++++ + M G P+H + + + L G +H V ++G+E D+
Sbjct: 830 SNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDL 889
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+ +I MY +A +FD MP++++ + S++ A SA +F M
Sbjct: 890 FICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSER 949
Query: 316 GVVPNESMSEIY 327
VV SM + Y
Sbjct: 950 DVVTWSSMIDGY 961
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/362 (18%), Positives = 156/362 (43%), Gaps = 30/362 (8%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAF--ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
+ +N ++ ++ N A K+M F + +T + +L+ +T L
Sbjct: 176 NAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGFHFDKFTLTPVLQVYCNTGKSERALS 235
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV----ISWTSLINGYA 165
+++ GW + + L+ + +D A +L +M RD+ ++ LI+G+
Sbjct: 236 VFNEILSRGWLD-EHISTILVVSFCKWGQVDKAFELIEMLEERDIRLNYKTYCVLIHGFV 294
Query: 166 KSGQISIARQMFDKMPE----KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
K +I A Q+F+KM + + +I G + + AL + ++ G P+
Sbjct: 295 KESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPDR- 353
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS- 280
GI+G L C+F + R + + ++L ++ + + + + A S +
Sbjct: 354 GILGKLL-CSFSEESELSRITEVIIGDIDKKSVMLLYKSLFEGFIRNDLVHEAYSFIQNL 412
Query: 281 MPNRDVFAYTSLISGLANHDQS----ASAIELFMRMQLEGVVPNESMSEIY-----GIEP 331
M N + + ++ L +H+++ + ++ + + ++ + +++ ++ G+ P
Sbjct: 413 MGNYESDGVSEIVKLLKDHNKAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIP 472
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVL----GALLNACRVHGDVDLG 384
G Y +++ + + G E + K++ EM +EP + L G L C G +DL
Sbjct: 473 GPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLL 532
Query: 385 KE 386
K+
Sbjct: 533 KK 534
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 245/424 (57%), Gaps = 25/424 (5%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + +TF +NT+IR P+ A L+ + R P+ +TF F+L+A A
Sbjct: 65 LFHSIPNPSTFSFNTLIRIHTLLLSPLPALHLFSTLRRLSLPPDFHTFPFVLKASAQLHS 124
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L + H+Q ++ G F LN L+ +Y+ + ++ A KLF + DV+S+ +LI+G
Sbjct: 125 LSLAQSLHSQALKFGLLPDLFSLNTLIGVYSIHHRVNDAHKLFYECPHGDVVSYNALIHG 184
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
K+ QIS AR++FD+MP ++ +SW MI GY + L +A+E FN M +P++ +
Sbjct: 185 LVKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIAL 244
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
V L+ACA LG L+QG +H Y+ RN I +D L T ++D+YAKCGC+ETA VF+S
Sbjct: 245 VSVLSACAQLGELEQGSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVETARDVFESCME 304
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------------- 320
+ VF + +++ G A H + + +E F RM EGV P+
Sbjct: 305 KYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDGVTLLGVLVGCSHAGLVLEARRI 364
Query: 321 -ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+ M +YG++ +HYGC+ D+L RAG++E ++V+ MP D + G LL CR+HG
Sbjct: 365 FDEMENVYGVKREGKHYGCMADMLARAGLIEEGVEMVKAMPSGGDVFAWGGLLGGCRIHG 424
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE-VRKVPGCSL 438
+V++ K+ + ++E + GV+ +++NIYA TEQW+ + KVRR + N+ +K+ G SL
Sbjct: 425 NVEVAKKAAQQVMEIKPEDGGVYSVMANIYAHTEQWDDLVKVRRSLSANKRAKKITGRSL 484
Query: 439 IEVD 442
I ++
Sbjct: 485 IRLN 488
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 129/297 (43%), Gaps = 36/297 (12%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
+S LF + R W TMI G++ +A L+ +M+R + P+N +L
Sbjct: 190 QISRARELFDEMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALVSVLS 249
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
ACA L G I H + R ++ GL+ LYA C C++ AR +F+ + + V +
Sbjct: 250 ACAQLGELEQGSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVETARDVFESCMEKYVFT 309
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W +++ G+A G+ S+ LE+F+ M G
Sbjct: 310 WNAMLVGFAIHGEGSM-------------------------------VLEYFSRMVSEGV 338
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ ++G L C+ G + + R I ++ G++ + + DM A+ G IE
Sbjct: 339 KPDGVTLLGVLVGCSHAGLVLEARRIFDEMENVYGVKREGKHYGCMADMLARAGLIEEGV 398
Query: 276 SVFDSMPN-RDVFAYTSLISGLANH---DQSASAIELFMRMQLEGVVPNESMSEIYG 328
+ +MP+ DVFA+ L+ G H + + A + M ++ E M+ IY
Sbjct: 399 EMVKAMPSGGDVFAWGGLLGGCRIHGNVEVAKKAAQQVMEIKPEDGGVYSVMANIYA 455
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 256/468 (54%), Gaps = 25/468 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G + +LF + + WNTM+ +A+ A Y+++ R N Y+F+
Sbjct: 128 AKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFA 187
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L C L + H QV+ G+ S + + +L YA C+ M AR+LFD + R
Sbjct: 188 GLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIR 247
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV++WT++++GYA+ G + AR++FD MPEKN V+W+++I GY + DL +ALE F M
Sbjct: 248 DVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMM 307
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
RP+ L A A + +L+ G+ IH Y+ R I + I+ +++IDMY+KCGC+E
Sbjct: 308 ALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLE 367
Query: 273 TACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
VFD M ++ DV + ++IS LA H + AI++F M G+ P+
Sbjct: 368 VGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNAC 427
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
ES++ +G+ P +HY CL+DLLGRAG + + +MP +P++ +
Sbjct: 428 SHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEI 487
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
ALL CR+HG+++ G+E E ++E +VLLS+I+A+ +W VE VR+ M +
Sbjct: 488 WNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNE 547
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
VRK S IE++ V F + +R + L E I L L + H++ +
Sbjct: 548 RHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYLALKQLAGHMEEV 595
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 166/360 (46%), Gaps = 59/360 (16%)
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD-FVLNGLLHLYATCNCMDPAR 143
LP+ T +++L+ CA+T L +G H + G + + F+ N L+++Y+ C A
Sbjct: 48 LPSK-TLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAY 106
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K+FD R++ SW +++GYAK G+I AR++FDKMPEK+ VSW+ M+ Y + +
Sbjct: 107 KVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCND 166
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
AL + ++ G N G L C + L+ + H V G ++++ ++++D
Sbjct: 167 ALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLD 226
Query: 264 MYAKC-------------------------------GCIETACSVFDSMPNRDVFAYTSL 292
YAKC G +E A +FD MP ++ A+TSL
Sbjct: 227 AYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSL 286
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESM-----------------SEIYG------I 329
I+G A HD A+ELF +M + P++ +I+G I
Sbjct: 287 IAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNI 346
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P L+D+ + G LE + V M + D + ++++ HG G+E ++
Sbjct: 347 RPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGR---GQEAIQ 403
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DI 255
Q LF +A+ + G R + L CA +L G+W+H ++ G++ +
Sbjct: 28 QGQLF-QAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNT 86
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
L +I+MY+KCG +A VFD M R+++++ ++SG A + A +LF +M +
Sbjct: 87 FLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEK 146
Query: 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALL 372
VV +M Y ++G A + RE+ I + Y LL
Sbjct: 147 DVVSWNTMVIAY----------------AKSGFCNDALRFYRELRRLGIGYNEYSFAGLL 190
Query: 373 NACRVHGDVDLGKET 387
N C +++L K+
Sbjct: 191 NICVKVKELELSKQA 205
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 257/463 (55%), Gaps = 28/463 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+++I +H G + + C + + +++ R+F Q T ++N MI+G
Sbjct: 24 QLREIHAHFLRHGLNQLNQILSHFVSICGS--LNKMAYANRIFKQTQNPTIILFNAMIKG 81
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ ++F L+ M P+ YT + +L+AC+ L +G H +V+ +G+E +
Sbjct: 82 YSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGF 141
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ G++ LY++C M+ A K+FD RDVI W +I+G+ K G + + +F +M +
Sbjct: 142 SAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRK 201
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ VSW+ MI+ Q EAL F+ M GF+P+ A +V L CA LG++D G+WI
Sbjct: 202 RSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWI 261
Query: 243 HAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H+Y +G+ D + +G A++D Y K G ETA VFD MP ++V ++ +LISGLA +
Sbjct: 262 HSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGN 321
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
+EL M EGV PN+ SM E + IEP ++HYG
Sbjct: 322 GELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYG 381
Query: 338 CLVDLLGRAGMLEAAKKVVREMP-IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+VDLLGR+G + A ++R MP P+ + G+LL+ACR HGDV+L V+ L++
Sbjct: 382 CMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGSLLSACRTHGDVELAHLAVKELIDLEP 441
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+ G +VLLSN+YA E+W+ V VR M + V+K PG S+I
Sbjct: 442 WNSGNYVLLSNMYAEEERWDKVANVRGMMREKNVKKTPGQSVI 484
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 262/485 (54%), Gaps = 65/485 (13%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ + G L DP + +++ + + G ++H Y +F + F++NT+IRG A P
Sbjct: 1 MALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPR 60
Query: 71 KAFALYKQMLRSDFL----PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
A +LY +MLR P+ TF F+LRAC G+ HA V++ G ES FV
Sbjct: 61 DAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVK 120
Query: 127 NGLLHLYATCNCM-------------------------------DPARKLFDMSVNRDVI 155
N L+ ++A+C + AR LFD +D++
Sbjct: 121 NALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLV 180
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW +I YAK G +++AR++FD++PE++ VSW+ MI+GYV+ ALE F MQ G
Sbjct: 181 SWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG 240
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCI 271
+P+ ++ L+ACA G LD G+ +H+ + RNG ++LG A+IDMYAKCG +
Sbjct: 241 EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNALIDMYAKCGSM 298
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------- 322
++A VF SM ++DV + S++ GLA H +I++F +M V P+E
Sbjct: 299 KSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIAC 358
Query: 323 ---------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
M Y +EP ++HYGC+VD+LGRAG+L+ A + + M EP++ +
Sbjct: 359 SHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVI 418
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
LL+ACRVHG+++L K L++ D G +VLLSNIYAS +W G EK+R+ M+D
Sbjct: 419 WRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDD 478
Query: 428 NEVRK 432
+ V K
Sbjct: 479 SGVNK 483
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 170/487 (34%), Positives = 263/487 (54%), Gaps = 46/487 (9%)
Query: 36 GDLSHGYRL--FVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
D+SH Y L F C + F N ++R P++ L+ ++ R N ++F+F
Sbjct: 75 ADVSHSYPLLLFRCSNCTSAFASNHLLRVLPHP-LPLR---LFPRLPRR----NPHSFTF 126
Query: 94 ILR-----------ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
+L A + F+G HA ++ G +V N +H Y C +
Sbjct: 127 LLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAM 186
Query: 143 RKLFD-MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
RK+FD + + RDV++W +++ GY ++G + +AR++FD MP ++ VSWS +I GYV+
Sbjct: 187 RKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEP 246
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
+ AL F M G + N A IV AL+A A LG L+QG+++H V R G+ + + LG A+
Sbjct: 247 EVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAAL 306
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
IDMY+KCG + A VFD+MP RDVFA+ S+I GLA H A++LF + EG P
Sbjct: 307 IDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTS 366
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
+ M+E Y IE ++HYGC+VDLL RAG+++ A +++
Sbjct: 367 ITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE 426
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
M I PD + G +L+AC+ HG VDLG L+E H+G +VLL++IYA ++W+
Sbjct: 427 GMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDE 486
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
V KVR+ M + K G SL+E G+V +F+ G+ + I +L I++ L +
Sbjct: 487 VRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGY 546
Query: 478 FDDGNEV 484
D + V
Sbjct: 547 VPDVSSV 553
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G ++ +F + R F WN+MI G A A L+++ + F P + TF
Sbjct: 311 SKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFV 370
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFV-----LNGLLHLYATCNCMDPARKLFD 147
+L AC+ T + G + +L E YD ++ L + + A +L +
Sbjct: 371 GVLNACSRTGLVDEG----RRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE 426
Query: 148 -MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
M + D + W ++++ + G + + + +K+ E
Sbjct: 427 GMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIE 462
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 182/521 (34%), Positives = 281/521 (53%), Gaps = 74/521 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAV---GKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
M Q+KQI + + P A+ I+ S+ +L++ R+F +F+WN
Sbjct: 35 MPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWN 94
Query: 58 TMIRGFAEK---NEPIKAFALYKQML---RSDFLPNNYTFSFILRACADTSCLFVGLICH 111
T+IR +A N KA LYK M+ +P+N+TF +L+ACA T L G H
Sbjct: 95 TLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVH 154
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
A V++ G+ES ++ N L+H YATC C+D
Sbjct: 155 AHVLKHGFESDTYICNSLVHFYATCGCLD------------------------------- 183
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+A +MF KM E+N VSW+ MI+ Y + +F AL F MQ P+ + ++ACA
Sbjct: 184 LAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRV-HDPDGYTMQSVISACA 242
Query: 232 FLGALDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
LGAL G W+HAY+ D+N ++ D+++ T ++DMY K G +E A VF+SM RD+
Sbjct: 243 GLGALSLGLWVHAYILKKCDKNMVD-DVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLN 301
Query: 288 AYTSLISGLANHDQSASAIELFMRM-QLEGVVPN------------------------ES 322
A+ S+I GLA H ++ +A+ ++RM ++E +VPN +
Sbjct: 302 AWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDM 361
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC-RVHGDV 381
M++ Y +EP ++HYGCLVDL RAG + A +V EM I+PD + +LL+AC + + V
Sbjct: 362 MTKEYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASV 421
Query: 382 DLGKETVESLVER--SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+L +E + + E S+ GV+VLLS +YAS +WN V +R+ M + V K PGCS+I
Sbjct: 422 ELSEEMAKQVFESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSII 481
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
E+DGVV EF +G+ T+ E I ++ I++ L+S+ + D
Sbjct: 482 EIDGVVHEFFAGDTTHPKSENIYKVVTEIEEKLESIGYLPD 522
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 165/453 (36%), Positives = 246/453 (54%), Gaps = 57/453 (12%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLI 109
R WN+MI G+ + + A ++ ++L L P+ T L C L +G
Sbjct: 193 RDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKK 252
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
H G FVL DV +SLI+ Y+K GQ
Sbjct: 253 IHGLFTGSG-----FVL--------------------------DVFVGSSLIDMYSKCGQ 281
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
I AR++FD++P +N V W++MI GY Q DLFKEA+E F MQ+ GF + A I L+A
Sbjct: 282 IEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSA 341
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
C GAL QGRWIH Y +RN IE+D+ A+I MY+KCG I+ A +F + D+F++
Sbjct: 342 CGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSW 401
Query: 290 TSLISGLANHDQSASAIELFMRMQL-EGVVPNE------------------------SMS 324
+++ISGLA + +S A+ LF +M++ + PNE +M+
Sbjct: 402 SAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMT 461
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+IY + PG++HYGC+VDLLGRA +L A+K +R +PI+PD + +LL ACR HG+++L
Sbjct: 462 QIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELA 521
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ + + E G VLLSN+YAS +W V++VR+ M ++K PGCS +E+DG+
Sbjct: 522 EFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGL 581
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
V E +R++ M I + I+K L+S F
Sbjct: 582 VHELFVADRSHPEMGAIYETMISINKALQSKGF 614
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 195/394 (49%), Gaps = 42/394 (10%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ QI SH SG DP K++ + + D D + LF + F WN M R
Sbjct: 42 RSFNQILSHAIASGVFRDPVVSSKLLYYSLSHD-HDFAFSRTLFFQIHKPNVFSWNFMFR 100
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
++ + P + ALY MLR+ LP+NY+F F+L+ACA S L G H+ ++LG
Sbjct: 101 AYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHL 160
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDM--SVNRDVISWTSLINGYAKSGQISIARQMFDK 179
FV N L+ +++C ++ AR +FDM ++ RDV+SW S+I+GY +S + +A ++F
Sbjct: 161 DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVF-- 218
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
W + +G P+ +V AL+ C LG LD G
Sbjct: 219 --------WELLGDG--------------------SLSPDEVTLVSALSVCGRLGLLDLG 250
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH +G LD+ +G+++IDMY+KCG IE A VFD +P+R+ +TS+I+G A
Sbjct: 251 KKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQS 310
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
D AIELF MQ+ G + + I + H+G L GR L + + EM
Sbjct: 311 DLFKEAIELFREMQIGGFAADA--ATIACVLSACGHWGALAQ--GRWIHLYCERNSI-EM 365
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+ N ++G + + C GD+ E L +
Sbjct: 366 DLNARNALIG-MYSKC---GDIQKALEIFHGLTQ 395
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 134/322 (41%), Gaps = 42/322 (13%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I T SG + D F +I S G + ++F + +R T W +MI G+A
Sbjct: 251 KKIHGLFTGSGFVLDVFVGSSLIDM--YSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYA 308
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + +A L+++M F + T + +L AC L G W
Sbjct: 309 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG----------RW----- 353
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+HLY N S+ D+ + +LI Y+K G I A ++F + + +
Sbjct: 354 -----IHLYCERN-----------SIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPD 397
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG-RWI 242
SWSA+I+G +AL F+ M++ RPN +G L AC G +D+G +
Sbjct: 398 IFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYF 457
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQ 301
+A + I ++D+ + + A ++P DV + SL+ NH
Sbjct: 458 NAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGN 517
Query: 302 SASAIEL--FMRMQLEGVVPNE 321
IEL F Q+E + P
Sbjct: 518 ----IELAEFAAKQIEELEPRR 535
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 256/463 (55%), Gaps = 24/463 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ R+F + RT WN+MI G+++ +A ++++M P+ +T +L
Sbjct: 183 GLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLL 242
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+G H ++ G E V N L+ +YA C + A+ +FD +++DV+
Sbjct: 243 SVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVV 302
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT +IN YA G I A + F++MP KN VSW+++I +VQ L+ EA++ F M G
Sbjct: 303 SWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG 362
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
N +V L++C+ +G L G+ H+Y+ N I L L AIIDMYAKCG ++TA
Sbjct: 363 VMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAM 422
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
VF MP ++ ++ +I LA H AIE+F +MQ GV P+
Sbjct: 423 DVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSG 482
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
E M+ +GI P V+HY C+VDLLGR G+L A ++++MP++PD V AL
Sbjct: 483 LVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSAL 542
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR +G++ +GK+ ++ L+E + G++VLLSN+Y+ +++W+ ++ + + ++ N ++
Sbjct: 543 LGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIK 602
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
K S IE+DG +F+ ++ + I +L + HLKS
Sbjct: 603 KCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMDHLKS 645
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 209/387 (54%), Gaps = 46/387 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+KQ+K + + + + G +GK++ S+ + DL + ++LF + F++N +I
Sbjct: 49 LKQLKHVHAQIILHGLATQVLTLGKLVS--SSVQLRDLRYAHKLFDQIPQPNKFMFNHLI 106
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G++ ++PIK+ LY++M+ LPN +T F+L+ACA SC ++G+ HAQ +LG
Sbjct: 107 KGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMG 166
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S+ V N +L++Y C G I+ AR++FD +
Sbjct: 167 SHACVQNAILNIYVAC-------------------------------GLITSARRVFDDI 195
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E+ VSW++MINGY ++ +EA+ F MQ G P+ +VG L+ G D GR
Sbjct: 196 SERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGR 255
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
++H ++ GIE+D I+ A++DMYAKCG ++ A SVFD M ++DV ++T +I+ ANH
Sbjct: 256 FVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHG 315
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
A+E F +M + VV S+ + ++ G+ Y VDL R M ++
Sbjct: 316 LIDCALEFFNQMPGKNVVSWNSIIWCH-VQEGL--YAEAVDLFYR--MCDSG-------- 362
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKET 387
+ ++ L A+L++C GD+ LGK+
Sbjct: 363 VMANDTTLVAILSSCSHMGDLALGKQA 389
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/271 (18%), Positives = 105/271 (38%), Gaps = 61/271 (22%)
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P H + + C +L Q + +HA + +G+ ++ ++ + + A +
Sbjct: 34 PTHQTLHYLIDQCI---SLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKL 90
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------SMSEIY 327
FD +P + F + LI G +N ++ L+ RM +G++PN+ + Y
Sbjct: 91 FDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCY 150
Query: 328 ---------GIEPGVQHYGC----LVDLLGRAGMLEAAKKV------------------- 355
+ G+ + C ++++ G++ +A++V
Sbjct: 151 WLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGY 210
Query: 356 ---------------VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
++E+ +EPD + L LL+ HG+ DLG+ +V ++ +
Sbjct: 211 SKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDS 270
Query: 401 VHV-LLSNIYASTEQWNGVEKVRRGMEDNEV 430
+ L ++YA + V M D +V
Sbjct: 271 IVTNALMDMYAKCGNLKCAKSVFDQMLDKDV 301
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 170/508 (33%), Positives = 263/508 (51%), Gaps = 57/508 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q++Q+ + +V G L + K+I F S D ++G LF + R + W+ M+
Sbjct: 75 LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYG--LFDGMCVRDSVSWSVMV 132
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GFA+ + I F +++++R P+NYT F++RAC D L +G + H V + G +
Sbjct: 133 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 192
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV L+ +Y C +I AR +FDKM
Sbjct: 193 LDHFVCAALVDMYVKCR-------------------------------EIEDARFLFDKM 221
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E++ V+W+ MI GY + E+L F M+ G P+ +V + ACA LGA+ + R
Sbjct: 222 QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 281
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
I Y+ R +LD+ILGTA+IDMYAKCGC+E+A +FD M ++V +++++I+ H
Sbjct: 282 IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 341
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
Q A++LF M G++P++ SM E Y + V+HY
Sbjct: 342 QGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHY 401
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+VDLLGRAG L+ A K+++ M IE D + GA L ACR H DV L ++ SL+E
Sbjct: 402 TCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQS 461
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ G +VLLSNIYA+ +W V K+R M ++K PG + IEVD +F G+ T+
Sbjct: 462 QNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHP 521
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EI +L + L+ + + D N V
Sbjct: 522 RSKEIYEMLKSLSNKLELVGYVPDTNFV 549
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 165/508 (32%), Positives = 261/508 (51%), Gaps = 57/508 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q++Q+ +V G L + K++ F S D ++G LF + R + W+ M+
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYG--LFDGMCVRDSVSWSVMV 808
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GFA+ + + F +++++R P+NYT F++RAC D L +G + H V + G +
Sbjct: 809 GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 868
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV L+ +Y C +I AR +FDKM
Sbjct: 869 LDHFVCAALVDMYGKCR-------------------------------EIEDARFLFDKM 897
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E++ V+W+ MI GY + E+L F+ M+ G P+ +V + ACA LGA+ + R
Sbjct: 898 XERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 957
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
I Y+ R +LD+ILGTA+IDM+AKCGC+E+A +FD M ++V +++++I+ H
Sbjct: 958 TIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 1017
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
Q A++LF M G++PN+ M E Y + V+HY
Sbjct: 1018 QGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHY 1077
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+VDLLGRAG L+ A K++ M E D + GA L ACR H DV L ++ SL+E
Sbjct: 1078 TCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQP 1137
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ G ++LLSNIYA+ +W V K+R M ++K+PG + IEVD +F G+ T+
Sbjct: 1138 QNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHP 1197
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EI +L + L+ + + D N V
Sbjct: 1198 RSKEIYEMLKSLGNKLELVGYVPDTNFV 1225
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 257/462 (55%), Gaps = 36/462 (7%)
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
MIRG ++ P K LY +M+ ++ PN +T+SF++ CA + L G H +V+ G
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60
Query: 119 WESYDFVLNGLLHLYATCNCMD---PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ + FV L++LYA D AR++FD V+R+++SW SL+ GY + G + AR+
Sbjct: 61 YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE+N VSW+ MI G Q+ K+AL F+ M+ G + + +V AL+ACA LG
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180
Query: 236 LDQGRWIHAYVDRN----GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
L G WIH+Y+D L + L ++I MYA CG I+ A VF M R ++TS
Sbjct: 181 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTS 240
Query: 292 LISGLANHDQSASAIELFMRMQLEGV---VPN------------------------ESMS 324
+I+G A + A+ +F MQ G P+ E M+
Sbjct: 241 MITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMN 300
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ +GI P ++HYGC+VDLL RAG L+ A +++ MP++P++ V GALL CR+H + +L
Sbjct: 301 KKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELA 360
Query: 385 KETVESL-VERSLDH-EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+ L +E D G VLLSN+YA+ ++W V VR+ M + VRK G S ++++
Sbjct: 361 SHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 420
Query: 443 GVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
GVV +FV+G+ T+ + +L I + K + D +EV
Sbjct: 421 GVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEV 462
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 41/296 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ R+F + R W TMI G A+ +A L+ +M R+ + L
Sbjct: 113 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAAL 172
Query: 96 RACADTSCLFVGLICHAQV-IRLGWESYDFVL---NGLLHLYATCNCMDPARKLFDMSVN 151
ACA+ L +G H+ + RL + ++ N L+H+YA+C +D A K+F
Sbjct: 173 SACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQ 232
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
R ISWTS+I G+AK G +EAL F +M
Sbjct: 233 RSTISWTSMITGFAKQGHA-------------------------------EEALGVFQWM 261
Query: 212 QLCGF---RPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAK 267
Q G RP+ +G L AC+ G +DQGR +++ GI I ++D+ ++
Sbjct: 262 QRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSR 321
Query: 268 CGCIETACSVFDSMPNRDVFA-YTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
G ++ A + +SMP + A + +L+ G H + A + ++ LE + P+++
Sbjct: 322 AGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALE-LKPDQA 376
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/482 (34%), Positives = 251/482 (52%), Gaps = 33/482 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M +++Q+ L SG DP A +++ F A D+++ RL F+WNT I
Sbjct: 49 MARLRQLHGALVKSGLAKDPIAASRVVAFL-AGKGRDVAYAARLVRHHPRPNAFMWNTAI 107
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLF----VGLICHAQVIR 116
R ++ P A AL+ MLRS P TF + + A G H V++
Sbjct: 108 RALSDGPGPDAAVALFLDMLRSPTPPERRTFPSLFASYARLGVRADDDGAGAALHGMVLK 167
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DVISWTSLINGYAKSGQISIARQ 175
LG +V N ++ +YA+ D A L+ DV++ S I ++G++ AR+
Sbjct: 168 LGLAGDAYVRNSMIAMYASWGRADEALLLYGQCGQAFDVVACNSAIVALTRAGRVDEARE 227
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD MP + +WSAM++ Y + ++A+E F+ MQ G PN +V L CA LGA
Sbjct: 228 VFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQASGVEPNANVLVSVLGCCAALGA 287
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSL 292
L+QG W+HAY+D++G+ ++ ++ TA++DMY KCG I A VFD+ ++ + ++ ++
Sbjct: 288 LEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIHKARHVFDASRSQGLAKLSSWNAM 347
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYG 328
+ GLA H Q A+ LF ++ G+ P+ +M Y
Sbjct: 348 MLGLAVHGQCQEALALFSELETYGLSPDNVTFITILMAYGHSGMADEAKALFSAMEREYA 407
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
+ PG++HYGCLVD L RAG L A+ V+R MP+ PD + GALL+ CR+HGD + G
Sbjct: 408 VTPGIEHYGCLVDALARAGRLGEAEDVIRTMPMRPDTAIWGALLSGCRLHGDAEAGARAA 467
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+E G +VL +++ A + VR M V KVPGCS+IEV+GVV EF
Sbjct: 468 SGAMECDPQDSGAYVLAASVLARDGEVGAGVSVRERMRVEGVAKVPGCSMIEVNGVVHEF 527
Query: 449 VS 450
VS
Sbjct: 528 VS 529
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 167/484 (34%), Positives = 266/484 (54%), Gaps = 46/484 (9%)
Query: 39 SHGY--RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
SH Y LF C + F N ++R P++ L+ ++ R N ++F+F+L
Sbjct: 76 SHSYPLSLFRCASCASAFASNHLLRVLPHP-LPLR---LFPRLPRR----NPHSFTFLLA 127
Query: 97 ACAD-----------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
+ ++ + +G HA ++ G +V N L+H Y C + RK+
Sbjct: 128 SLSNHLDADPAVAVSIASRLMGAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKV 187
Query: 146 FD-MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
FD + + RDV++W +++ GY ++G + +AR++FD MP ++ VSWS ++ GYV+ + A
Sbjct: 188 FDELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVA 247
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
L F M + G + N A IV AL+A A LG L+QG+++H + R G+ + + LG A++DM
Sbjct: 248 LGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDM 307
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---- 320
Y+KCG + A VFD+MP RDVFA+ S+I GLA H A++LF + EG P
Sbjct: 308 YSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITF 367
Query: 321 --------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+ M+E YGIE ++HYGC+VDLL RAG+++ A +++ M
Sbjct: 368 VGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMH 427
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420
I PD + G +L+AC+ HG VDLG L+E H+G +VLL++IYA ++W+ V K
Sbjct: 428 IPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRK 487
Query: 421 VRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
VR+ M + K G SL+E G+V +F+ G+ + +I +L ID+ L + D
Sbjct: 488 VRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMDHKDSVQIYNMLCMIDRRLAEAGYVPD 547
Query: 481 GNEV 484
+ V
Sbjct: 548 VSSV 551
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G ++ +F + +R F WN+MI G A A L+++ + F P N TF
Sbjct: 309 SKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFV 368
Query: 93 FILRACADTSCL-----FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
+L AC+ T + + L+ I E Y +++ L + + A +L +
Sbjct: 369 GVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVD----LLSRAGLVQEAIELIE 424
Query: 148 -MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
M + D + W ++++ + G + + + +K+ E
Sbjct: 425 GMHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIE 460
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 254/462 (54%), Gaps = 61/462 (13%)
Query: 53 TFIWNTMIRGFAEKNEPI-----KAFALYKQMLRSDFLPNNYTFSFILRACAD-TSCLFV 106
F+ NT+IR A PI +A A + MLR +PN +TF F+L+ACA V
Sbjct: 88 AFLANTLIRAHA--TSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDV 145
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
GL HA ++ G+ + +V N L+H+Y +C
Sbjct: 146 GLQAHAAALKFGFATDQYVSNTLIHMY---SCFG-------------------------- 176
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226
G + AR +FD+MP+++AV+WSAMI GYV+ L +A+E F MQ G + + ++G
Sbjct: 177 GGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGV 236
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L A LGAL+ RW+ +V+R GI + L A+ID AKCG ++ A +VF+ M R V
Sbjct: 237 LAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSV 296
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------S 322
++TS+I LA + A+ +F M++ GV P++ +
Sbjct: 297 VSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDA 356
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
M YGIEP ++HYGC+VD+ GRAGM+E A + VR MPI+P+ + +L++ACR HG ++
Sbjct: 357 MKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLE 416
Query: 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
LG+ SL+ HE +++LSN++A T++W ++RR M ++KVPGCS++E+D
Sbjct: 417 LGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELD 476
Query: 443 GVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
G V EF++G+ ++ ++I ++ + + L+ + +EV
Sbjct: 477 GEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEV 518
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 23 VGKIIGFCSA-----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
+GK + C+A + GD+ +F +Q R+ W ++I A + +A +++
Sbjct: 261 IGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFE 320
Query: 78 QMLRSDFLPNNYTFSFILRACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132
+M + P++ F +L AC+ D C + A + G E ++ +
Sbjct: 321 EMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYF----DAMKVEYGIEPKIEHYGCMVDM 376
Query: 133 YATCNCMDPARKLF-DMSVNRDVISWTSLINGYAKSGQI----SIARQMFDKMPEKNAVS 187
+ ++ A + M + + + W SL++ G++ SI R + + P A +
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEA-N 435
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+ + N + +KE E M G +
Sbjct: 436 YIMLSNVFALTQRWKEKSEIRREMSKRGIK 465
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 262/485 (54%), Gaps = 65/485 (13%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ + G L DP + +++ + + G ++H Y +F + F++NT+IRG A P
Sbjct: 1 MALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPR 60
Query: 71 KAFALYKQMLRSDFL----PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
A +LY +MLR P+ TF F+LRAC G+ HA V++ G ES FV
Sbjct: 61 DAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVK 120
Query: 127 NGLLHLYATCNCM-------------------------------DPARKLFDMSVNRDVI 155
N L+ ++A+C + AR LFD +D++
Sbjct: 121 NALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLV 180
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW +I YAK G +++AR++FD++PE++ VSW+ MI+GYV+ ALE F MQ G
Sbjct: 181 SWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG 240
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCI 271
+P+ ++ L+ACA G LD G+ +H+ + RNG ++LG A+IDMYAKCG +
Sbjct: 241 EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNALIDMYAKCGSM 298
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------- 322
++A VF SM ++DV + S++ GLA H +I++F +M V P+E
Sbjct: 299 KSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIAC 358
Query: 323 ---------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
M Y +EP ++HYGC+VD+LGRAG+L+ A + + M EP++ +
Sbjct: 359 SHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVI 418
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
LL+ACRVHG+++L K L++ D G +VLLSNIYAS +W G EK+R+ M+D
Sbjct: 419 WRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDD 478
Query: 428 NEVRK 432
+ V K
Sbjct: 479 SGVNK 483
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/483 (32%), Positives = 267/483 (55%), Gaps = 25/483 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+ +IQ + + +P V + G L LF + + + W MI G
Sbjct: 470 QVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F + E +A L ++ RS +P++ +F+ L ACA+ + +G + H+ I+ G +
Sbjct: 530 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 589
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+V+NGL+ +YA C ++ +F +D +SW SLI+G +++ + AR +F+KMP+
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPK 649
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ VSW+A+I+ YVQ + AL+ F M G +PN + L+AC LGA+ G
Sbjct: 650 RDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQF 709
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
HA + + G + + +G ++I MY KCG + C VF+ MP D+ + +++ G A +
Sbjct: 710 HALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEEMPEHDLITWNAVLVGCAQNGLG 768
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
AI++F +M++EG++P++ SM++ YGI P V HY C
Sbjct: 769 KEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTC 828
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG L A+ ++ MP++PD+ + ALL ACR+H +V+LG+ E L + +
Sbjct: 829 MVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPK 888
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
+VLLSN++AS W+ V ++R+ M+D + K PG S I+V + FV+G+RT+ +
Sbjct: 889 SATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQI 948
Query: 459 EEI 461
EEI
Sbjct: 949 EEI 951
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 170/344 (49%), Gaps = 25/344 (7%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G + R+F + R WN+MI G+++ + +A L+ + N T++ +
Sbjct: 184 LGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK----NIRTWTIL 239
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRD 153
L A G I A+ + + V N ++ Y + ARKLFD ++
Sbjct: 240 LTGYAKE-----GRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKN 294
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V SW S++ GY ++S AR++FD+MPE+N+VSW MI+GYV + + EA + F M
Sbjct: 295 VASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCR 354
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
RP+ + V L+A L L+ + + G E D+++G+AI++ Y + G ++
Sbjct: 355 TVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDL 414
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG----- 328
A F++MP R+ +++T++I+ A + AI+L+ R+ + V +M Y
Sbjct: 415 AMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRI 474
Query: 329 ----------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
+ P V + ++ + GML+ AK + ++MP++
Sbjct: 475 QKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK 518
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 164/353 (46%), Gaps = 56/353 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L F + R + W TMI FA+ A LY++ +P
Sbjct: 410 GSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER------VPE-------- 455
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+ A + + + +AQV R+ AR +FD +N +V+
Sbjct: 456 QTVATKTAM---MTAYAQVGRI----------------------QKARLIFDEILNPNVV 490
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++I GY ++G + A+ +F KMP KN+ SW+AMI G+VQ + +EALE + G
Sbjct: 491 AWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSG 550
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ + AL+ACA +G ++ GR IH+ + G + + + +I MYAKCG +E
Sbjct: 551 SVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGS 610
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335
VF ++ +D ++ SLISGL+ + A +F +M VV ++ Y ++ G
Sbjct: 611 HVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAY-VQAGHGE 669
Query: 336 YG--CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+D+L R I+P+ + +LL+AC G + LG++
Sbjct: 670 VALDLFLDMLARG--------------IKPNQLTVTSLLSACGNLGAIKLGEQ 708
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 58/274 (21%)
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N +++ Y+ +D AR LFD V +++ +WT L+ GYAK G+I AR++F+ M E+N V
Sbjct: 206 NSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVV 265
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
SW+AMI+GYVQ K A + F+ M
Sbjct: 266 SWNAMISGYVQNGDLKNARKLFDEMP---------------------------------- 291
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
E ++ +++ Y C + A +FD MP R+ ++ +ISG + A
Sbjct: 292 -----EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 346
Query: 307 ELFMRMQLEGVVPNES-----MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
++F++M P++S +S I G++ ++L+G + + + +
Sbjct: 347 DVFVKMCRTVARPDQSIFVVVLSAITGLDD--------LELIG------SLRPIAIKTGY 392
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
E D V A+LNA +G +DL E++ ER+
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDLAMHFFETMPERN 426
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 170/451 (37%), Positives = 246/451 (54%), Gaps = 56/451 (12%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
T WNT+I G+ P KA + QM + + ++ T L ACA T + VG +CHA
Sbjct: 161 TVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHA 220
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++ G+E NC +SLI+ YAK GQ+
Sbjct: 221 LLVTNGFE---------------INCY----------------MGSSLISMYAKCGQVED 249
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR++FD MP++NAV W++MI+GY Q+ KEA++ F MQ+ G + + A I +++C
Sbjct: 250 ARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQ 309
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+GALD GR++HAY D +G+ DI + ++IDMY+KCG I+ A +F M RD F++T +
Sbjct: 310 MGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVI 369
Query: 293 ISGLANHDQSASAIELFMRMQLE-GVVPNE------------------------SMSEIY 327
I G A + S A++LF +M+ E GV+PNE MS IY
Sbjct: 370 IMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIY 429
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GI P ++HYGC+VDLLGRA +L A++ ++EMPI PD + +LL ACR G+V L +
Sbjct: 430 GIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYV 489
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E + + G VLLS +YA+T +W KVR G+ K PGCS IEVDG V E
Sbjct: 490 AERIQVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHE 549
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
F +G+ ++ E I L GI++ L + F
Sbjct: 550 FFAGDESHFETEAIYSTLLGINELLVAESFL 580
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 31/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F + R W +MI G+ + + +A L++ M + ++ T S ++
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+C L +G HA G V N L+ +Y+ C + A +F V RD
Sbjct: 305 SSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNF 364
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT +I G+A +G A +F +M E+ G
Sbjct: 365 SWTVIIMGFAANGLSGEALDLFAQMEEEG------------------------------G 394
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
PN +G LT+C+ G ++QG R H GI I ++D+ + + A
Sbjct: 395 VMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEA 454
Query: 275 CSVFDSMP 282
MP
Sbjct: 455 EQFIKEMP 462
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 25/162 (15%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTF 91
S GD+ Y +F + R F W +I GFA +A L+ QM +PN TF
Sbjct: 343 SKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITF 402
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCM---------- 139
+L +C+ H ++ G+ + + + G+ CM
Sbjct: 403 LGVLTSCS-----------HGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLL 451
Query: 140 -DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ + + +M + D + W SL+ G++ +A + +++
Sbjct: 452 AEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERI 493
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/508 (32%), Positives = 267/508 (52%), Gaps = 74/508 (14%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++Q+ + + G D F + + + C++ + + S+ +F + +T +WNT I+G+
Sbjct: 41 LEQVHARIIRKGLHQDHFLISQFLTLCNS--LSNFSYTTSVFNGVSSPSTVLWNTYIKGY 98
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+E +L+ +M RSD +P+ +T+ +++AC+ + G+ H +R G
Sbjct: 99 SENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDV 158
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV+ L+ LY C + ARK+FD R+V+SWT++I GYA + AR++FD+MPEK
Sbjct: 159 FVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEK 218
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYM-------------------------------- 211
NAVSW+A+I+GYV+ + A + F+ M
Sbjct: 219 NAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAP 278
Query: 212 ------------QLCG---FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
++C +P+ +V ++AC+ +G+L+ +W+ YV ++ I++
Sbjct: 279 ERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRA 338
Query: 257 -LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+ A+IDM AKCG ++ A +F+ MP RD+ +Y S++ GL+ H A+ LF RM E
Sbjct: 339 HVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNE 398
Query: 316 GVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
G+ P+ ESM Y I P HY C+VDLLGRAG L+
Sbjct: 399 GLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKE 458
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411
A ++++ MP+EP GALL AC++H D++LG+ + L E + G +VLLSNIYA+
Sbjct: 459 AYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAA 518
Query: 412 TEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
EQW V +R M + +RK+PGCS I
Sbjct: 519 AEQWLDVSLLRNKMRERGIRKIPGCSWI 546
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/463 (36%), Positives = 254/463 (54%), Gaps = 26/463 (5%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFIL 95
L+H LF + R W T++ G+A + +A+ ++ +M+ + L PN T ++
Sbjct: 191 SLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVV 250
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A L G + + V G + N L+ ++ C AR++FD +DV
Sbjct: 251 SAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVY 310
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT+++N YAK G + A ++FD MP +NAVSWS MI Y Q + +EA+ F M G
Sbjct: 311 SWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEG 370
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIH-AYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P +AG+V L+ACA LG LD GRWI+ YV L + LG A ID+YAKCG + A
Sbjct: 371 VEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAA 430
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
+F M R+V ++ S+I A H QS + LF +++ +VP+E
Sbjct: 431 SKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHS 490
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M IYGIEP +HY C++DLLG+ G+LE A +V + MP+E D GA
Sbjct: 491 GLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGA 550
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LLNACR++G+V++G+ + LV+ + G++VL+S IYAS +W+ V+ +R M + V
Sbjct: 551 LLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGV 610
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+K PGCS IEVDG EF+ + ++V E+I L I HLK
Sbjct: 611 KKNPGCSSIEVDGKFHEFLVADVSHVHSEDIYAALKNIYFHLK 653
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 176/387 (45%), Gaps = 53/387 (13%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q+ + LTVSG F +++ FC+ S + H + ++ TM+R F
Sbjct: 55 QLHALLTVSGLAAHRFPASRLLAFCALSTPPRVDHAAAILARASAPNAYMLATMMRAFLR 114
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA---DTSCLFVGLICHAQVIRLGWESY 122
P +A AL+++++R + T F ++A A + G H ++ G +
Sbjct: 115 ARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVHCVALKWGHVAQ 174
Query: 123 DFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
++ N L+H YA + AR LFD +RDV+SWT+L++GYA+ G A ++F +M
Sbjct: 175 SVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM- 233
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
++ G G +PN +V ++A +G L GR
Sbjct: 234 ---------VVAG--------------------GLQPNEVTLVAVVSAMGQMGLLAFGRM 264
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
++ YV G+ + L A+IDM+ K GC +A VFDSM +DV+++T++++ A
Sbjct: 265 VYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGD 324
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-- 359
SA LF M V + C++ +A E A ++ + M
Sbjct: 325 LESAARLFDDMPRRNAVS----------------WSCMIAAYSQANQPEEAVRLFKAMIE 368
Query: 360 -PIEPDNYVLGALLNACRVHGDVDLGK 385
+EP N L ++L+AC G +DLG+
Sbjct: 369 EGVEPINAGLVSVLSACAQLGCLDLGR 395
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD +LF + R WN+MI A + + L++Q+ + +P+ TF +L
Sbjct: 425 GDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLL 484
Query: 96 RACADTSCLFVGLICHAQV-IRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRD 153
AC+ + + G ++ + G E ++ L ++ A ++ M + D
Sbjct: 485 SACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETD 544
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
W +L+N G + I DK+ + N +
Sbjct: 545 EAGWGALLNACRMYGNVEIGEFAADKLVQLNPL 577
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 262/485 (54%), Gaps = 65/485 (13%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ + G L DP + +++ + + G ++H Y +F + F++NT+IRG A P
Sbjct: 1 MALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPR 60
Query: 71 KAFALYKQMLRSDFL----PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
A +LY +MLR P+ TF F+LRAC G+ HA V++ G ES FV
Sbjct: 61 DAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVK 120
Query: 127 NGLLHLYATCNCM-------------------------------DPARKLFDMSVNRDVI 155
N L+ ++A+C + AR LFD +D++
Sbjct: 121 NALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLV 180
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW +I YAK G +++AR++FD++PE++ VSW+ MI+GYV+ ALE F MQ G
Sbjct: 181 SWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG 240
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCI 271
+P+ ++ L+ACA G LD G+ +H+ + RNG ++LG A+IDMYAKCG +
Sbjct: 241 EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNALIDMYAKCGSM 298
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------- 322
++A VF SM ++DV + S++ GLA H +I++F +M V P+E
Sbjct: 299 KSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIAC 358
Query: 323 ---------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
M Y +EP ++HYGC+VD+LGRAG+L+ A + + M EP++ +
Sbjct: 359 SHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVI 418
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
LL+ACRVHG+++L K L++ D G +VLLSNIYAS +W G EK+R+ M+D
Sbjct: 419 WRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDD 478
Query: 428 NEVRK 432
+ V K
Sbjct: 479 SGVNK 483
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 169/512 (33%), Positives = 274/512 (53%), Gaps = 31/512 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSA-SDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ KQ+ +H+ + + + ++ F + I ++ + LF + F+++ +
Sbjct: 24 LNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSAL 83
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR +A + LY ML ++ P ++TFS + + S +G H G+
Sbjct: 84 IRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPS---LGSQLHLHAFLFGF 140
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V N ++H+Y +D ARK+FD +RDV++WT LI YA+SG + A ++F
Sbjct: 141 VNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVG 200
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ V+W++M+ GY Q + K+AL+ F M+ G + +VGA++ACA LG
Sbjct: 201 LPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYA 260
Query: 240 RWIH--AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
WI A R G ++ +G+A+IDMY+KCG +E A +VF M +VF+Y+S+I G A
Sbjct: 261 DWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFA 320
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H ++ SAI+LF M G+ PN +M E YG+ P
Sbjct: 321 VHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTA 380
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
HY C+ DLLGRAG LE A ++V+ MP+EP+ V GALL A +HG+ D+ + SL E
Sbjct: 381 DHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFE 440
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV-DGVVCEFVSGE 452
D+ G ++LLS YA +W+ V +VR+ M + ++RK PGCS +E +G++ EF +G+
Sbjct: 441 LEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGD 500
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ + EI L + + LK + N V
Sbjct: 501 VKHPEINEIKKALDDLLQRLKCTGYQPKLNSV 532
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 252/465 (54%), Gaps = 57/465 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK ++Q+ +H+ +G + F +GKII FC+ S+ G + + R+F ++ F+WNTMI
Sbjct: 64 MKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFLWNTMI 123
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG +P KAF YK+M + +N+T+SF+++ C +G H V++ G E
Sbjct: 124 RGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLE 183
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ FV N L+H+Y +F I A +F++M
Sbjct: 184 EHVFVRNTLVHMYG----------MFK---------------------DIEAATHLFEEM 212
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+ V+W+ +I+ V +KEA+E F M G +P+ A V L+ACA LG LD GR
Sbjct: 213 PKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGR 272
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H+ +D G+ + + ++IDMYAKCG +E A +F+ M R++ ++ ++I GLA H
Sbjct: 273 RVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHG 332
Query: 301 QSASAIELFMRMQLEGV-VPNES------------------------MSEIYGIEPGVQH 335
A+ELF +M E + PNE M Y I+P ++H
Sbjct: 333 HGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKH 392
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YG +VD+LGRAG++E A ++++ MPIE ++ V LL ACRVHG+++L ++ + L+E
Sbjct: 393 YGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELE 452
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV-PGCSLI 439
DH +VLL+N+YAS QWN V +VR+ M V+K PG S I
Sbjct: 453 PDHSSDYVLLANMYASAGQWNKVXRVRKSMHIRGVQKPKPGNSYI 497
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 163/439 (37%), Positives = 250/439 (56%), Gaps = 28/439 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
TT + + I + + + A AL +ML +P ++T S L AC L +G H
Sbjct: 97 TTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALH 153
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
A +L +V LL +YA D AR LFD + V+ T+++ YAK G +
Sbjct: 154 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 213
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
AR++FD MP K+ + W+AMI+GY Q EAL F +M G P+ I+ AL+A A
Sbjct: 214 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 273
Query: 232 FLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
LG + GRW+H+YV + ++L+ +GTA+IDMY KCG +E A SVF+S+ ++D+ +
Sbjct: 274 QLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWN 333
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
++I+G A H S A+E+F +++ +G+ P +SM E
Sbjct: 334 AMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEE 393
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I P ++HYGC+VDLLGRAG++E A +V+ M I PD + +LL ACR+H ++ LG++
Sbjct: 394 YAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQ 453
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+ LV L + G+++LLSNIYA+ W V +VR M+ + ++K PGCS IEV V
Sbjct: 454 IADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 513
Query: 447 EFVSGERTNVLMEEIVLLL 465
EFV+G+ ++ +EI +L
Sbjct: 514 EFVAGDMSHPRTDEIYAML 532
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 113/292 (38%), Gaps = 42/292 (14%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DP V + +G L LF + + WN MI G+ + P +A L++
Sbjct: 193 DPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRW 252
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN-----GLLHLY 133
MLRS P+ L A A G H+ V S LN L+ +Y
Sbjct: 253 MLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK----NSRRVQLNARVGTALIDMY 308
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
C ++ A +F+ ++D++ W ++INGYA G
Sbjct: 309 CKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGD------------------------ 344
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIE 252
++ALE F+ ++ G P +G L AC+ G +D+G ++ + + I
Sbjct: 345 -------SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 397
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSA 303
I ++D+ + G IE A + SM D + SL++ H A
Sbjct: 398 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 449
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 13/191 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +F + + +WN MI G+A + KA ++ Q+ P + TF +L
Sbjct: 312 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLL 371
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFV-----LNGLLHLYATCNCMDPARKLF-DMS 149
AC+ + + G Q + E Y V ++ L ++ A L M+
Sbjct: 372 NACSHSGLVDEG----HQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT 427
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALE 206
+ D + W SL+ +++ +Q+ D + N+ + + N Y V ++E
Sbjct: 428 IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVAR 487
Query: 207 HFNYMQLCGFR 217
+ M+ G +
Sbjct: 488 VRSMMKASGIQ 498
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 163/439 (37%), Positives = 250/439 (56%), Gaps = 28/439 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
TT + + I + + + A AL +ML +P ++T S L AC L +G H
Sbjct: 96 TTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALH 152
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
A +L +V LL +YA D AR LFD + V+ T+++ YAK G +
Sbjct: 153 AYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 212
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
AR++FD MP K+ + W+AMI+GY Q EAL F +M G P+ I+ AL+A A
Sbjct: 213 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 272
Query: 232 FLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
LG + GRW+H+YV + ++L+ +GTA+IDMY KCG +E A SVF+S+ ++D+ +
Sbjct: 273 QLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWN 332
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
++I+G A H S A+E+F +++ +G+ P +SM E
Sbjct: 333 AMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEE 392
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I P ++HYGC+VDLLGRAG++E A +V+ M I PD + +LL ACR+H ++ LG++
Sbjct: 393 YAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQ 452
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+ LV L + G+++LLSNIYA+ W V +VR M+ + ++K PGCS IEV V
Sbjct: 453 IADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 512
Query: 447 EFVSGERTNVLMEEIVLLL 465
EFV+G+ ++ +EI +L
Sbjct: 513 EFVAGDMSHPRTDEIYAML 531
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 113/292 (38%), Gaps = 42/292 (14%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DP V + +G L LF + + WN MI G+ + P +A L++
Sbjct: 192 DPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRW 251
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN-----GLLHLY 133
MLRS P+ L A A G H+ V S LN L+ +Y
Sbjct: 252 MLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK----NSRRVQLNARVGTALIDMY 307
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
C ++ A +F+ ++D++ W ++INGYA G
Sbjct: 308 CKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGD------------------------ 343
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIE 252
++ALE F+ ++ G P +G L AC+ G +D+G ++ + + I
Sbjct: 344 -------SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 396
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSA 303
I ++D+ + G IE A + SM D + SL++ H A
Sbjct: 397 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMA 448
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 13/191 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +F + + +WN MI G+A + KA ++ Q+ P + TF +L
Sbjct: 311 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLL 370
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFV-----LNGLLHLYATCNCMDPARKLF-DMS 149
AC+ + + G Q + E Y V ++ L ++ A L M+
Sbjct: 371 NACSHSGLVDEG----HQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT 426
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALE 206
+ D + W SL+ +++ +Q+ D + N+ + + N Y V ++E
Sbjct: 427 IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVAR 486
Query: 207 HFNYMQLCGFR 217
+ M+ G +
Sbjct: 487 VRSMMKASGIQ 497
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/455 (35%), Positives = 255/455 (56%), Gaps = 28/455 (6%)
Query: 40 HGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA 99
H +F LQ++ F+WN++I G+A+ +AF L+ QM SD LP+++T S + + +
Sbjct: 76 HSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSS 135
Query: 100 DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTS 159
+ LF G H + IR+G+ S V N ++ +Y C + +RK+FD R+ SW
Sbjct: 136 ELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNV 195
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-GFRP 218
LI GYA SG + + R++FD+M +N SW+AMINGYV+ EAL F MQ+ G P
Sbjct: 196 LIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEP 255
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
N +V L AC+ L GR IH + R + ++ L A+IDMY+KCG +++A VF
Sbjct: 256 NRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF 315
Query: 279 -DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------- 320
D +D +++S+ISG H + AI L+ +M G+ P+
Sbjct: 316 EDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLV 375
Query: 321 -------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
S+ YGIEP ++ + C+VD+LGRAG L+ A ++ MP+EP V GAL++
Sbjct: 376 NEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVS 435
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
+HGD+++ + L++ ++ +V +SN+YAS+ +W+ V +VRR M+D +RKV
Sbjct: 436 CSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKV 495
Query: 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
PGCS I ++ F + + + L + ++LLF I
Sbjct: 496 PGCSWISINNKTHCFYTLKYS--LRQVCLILLFII 528
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 135/318 (42%), Gaps = 62/318 (19%)
Query: 130 LHLYATCNCMDPAR----KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
LH T + R ++ + ++++ + T LI YA +R +FD + KN
Sbjct: 30 LHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNV 89
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
W+++INGY + L+ EA + FN M P+ + + LGAL G+ IH
Sbjct: 90 FLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGK 149
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS------------------------- 280
R G D ++ +I+ MY KCG E + VFD
Sbjct: 150 SIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVG 209
Query: 281 ------MPNRDVFAYTSLISGLANHDQSASAIELFMRMQ-LEGVVPNE--------SMSE 325
M R+VF++T++I+G + S A+ LF MQ ++G+ PN + S
Sbjct: 210 RRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSS 269
Query: 326 IYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
G+ G Q +G L+D+ + G L++A++V + + D +
Sbjct: 270 FSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSS 329
Query: 371 LLNACRVHGDVDLGKETV 388
+++ +HG G+E +
Sbjct: 330 MISGYGLHGK---GQEAI 344
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 273/502 (54%), Gaps = 39/502 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ +Q+ H+ +G D ++ + G L R+F L + ++NTMI
Sbjct: 120 LREGEQVHVHVFKNGFQTDERIATTLVDLYA--RCGRLDDARRVFDRLLVKDAQLYNTMI 177
Query: 61 RGFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ E E A L++ M R+ + R D++ V +
Sbjct: 178 AAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSA---------KHVFEMAN 228
Query: 120 ESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN-GYAKSGQISIARQMF 177
+ VL ++ +A +D AR +FD RDV +W +I YAK G + AR++F
Sbjct: 229 GVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVF 288
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D MPE+N V W++MI+GY QV FK+A++ F MQ+ G + + A I +++C +GALD
Sbjct: 289 DAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALD 348
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
GR++HAY D +G+ I + ++IDMY+KCG I+ A +F + RD F++T +I G A
Sbjct: 349 LGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFA 408
Query: 298 NHDQSASAIELFMRMQLEG-VVPNE------------------------SMSEIYGIEPG 332
+ S A++LF +M+ EG V+PNE MS++YGI P
Sbjct: 409 VNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPR 468
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLLGRA +L A++ + EMPI PD + +LL ACR G+V L + E +
Sbjct: 469 IEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVE 528
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E G +VLLSN+YA+T +W V KVR GM + V K PGCS+IEV+G EF+SG+
Sbjct: 529 ELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVNGCAHEFLSGD 588
Query: 453 RTNVLMEEIVLLLFGIDKHLKS 474
T++ E I +L GI++ L +
Sbjct: 589 ETHLETEAIYNILLGINELLAA 610
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 163/340 (47%), Gaps = 46/340 (13%)
Query: 72 AFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL 129
A ALY QM R P +T S +L+A A L G H V + G+++ + + L
Sbjct: 86 AVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTL 145
Query: 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS 189
+ LYA C +D AR++FD + +D + ++I Y ++G++ +A ++F+ MPE+N +
Sbjct: 146 VDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLM 205
Query: 190 AMINGYV---QVDLFKEALEHFN---YMQLCGFRPNHAGIVGALTACAFLGALDQGRWI- 242
M+ GY +D K E N M LC ++ A G++D R +
Sbjct: 206 EMVGGYSARGDMDSAKHVFEMANGVVNMVLC---------TAMISGFAKTGSVDDARSVF 256
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
R+ ++++G MYAKCG +E A VFD+MP R+V +TS+ISG +
Sbjct: 257 DGMRQRDVATWNVMIGV----MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKF 312
Query: 303 ASAIELFMRMQLEGVVPNESM-----------------------SEIYGIEPGVQHYGCL 339
A++LF MQ+ GV +++ +++G+ G+ L
Sbjct: 313 KQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSL 372
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+D+ + G ++ A ++ R + ++ D++ ++ V+G
Sbjct: 373 IDMYSKCGDIKKAHEIFRGL-VKRDDFSWTVMIMGFAVNG 411
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/437 (36%), Positives = 249/437 (56%), Gaps = 27/437 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC--LFVGLICHAQ 113
W + I + +A A + +M + PN+ TF +L AC D L G HA
Sbjct: 57 WTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAY 116
Query: 114 VIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
V +LG ++ + ++ L+ +Y+ C +D A +FD R+ +SW ++I+G ++G++
Sbjct: 117 VRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGE 176
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
A +FD+M E++A+SW++MI G+V+ F++ALE F MQL G P++ I+ L ACA
Sbjct: 177 AIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACAN 236
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGAL G WI+ +V + + +I + ++IDMY++CGCI A VF+ MP R + ++ S+
Sbjct: 237 LGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSM 296
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYG 328
I G A + + A+E F M+ EG P+ + M
Sbjct: 297 IVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRK 356
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I P ++HYGCLVDL RAG LE A V+ MP++P+ VLG+LL ACR HGDV L + +
Sbjct: 357 ISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLM 416
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ L E + +VLLSNIYA+ +W+G KVR+ M+ + K PG S IE+DG + EF
Sbjct: 417 KYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHEF 476
Query: 449 VSGERTNVLMEEIVLLL 465
V+G++T+V + I +L
Sbjct: 477 VAGDKTHVETQNIYAML 493
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/412 (23%), Positives = 162/412 (39%), Gaps = 92/412 (22%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL------- 85
S G L + +F + R + WNTMI G E +A L+ QM D +
Sbjct: 138 SKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIG 197
Query: 86 ------------------------PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
P+ T +L ACA+ L +GL + V++ ++
Sbjct: 198 GFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKD 257
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N L+ +Y+ C C+ AR++F+ R ++SW S+I G+A
Sbjct: 258 NIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFA---------------- 301
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+NG+ + EALE FN M+ GFRP+ GALTAC+ G +D+G
Sbjct: 302 ----------LNGHAE-----EALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQ 346
Query: 242 IHAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANH 299
+ R I I ++D+Y++ G +E A +V +MP + + SL++ H
Sbjct: 347 FFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTH 406
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-QHYGCLVDLLGRAGMLEAAKKVVRE 358
A L M + ++PG +Y L ++ G + A KV ++
Sbjct: 407 GDVGLAERL--------------MKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKK 452
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
M A +H ++ + + + HV NIYA
Sbjct: 453 M-------------KALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYA 491
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 22/210 (10%)
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA--FLGALDQ 238
P VSW++ I + + EA F+ MQ+ G RPNH + L+AC L L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 239 GRWIHAYVDRNGIELD-IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G IHAYV + G++ + +++GTA++DMY+KCG ++ A +FD M R+ ++ ++I G
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
+ + AI LF +M + SM G V + G E A + R
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSM------------IGGFV----KKGCFEQALEWFR 213
Query: 358 EMP---IEPDNYVLGALLNACRVHGDVDLG 384
EM +EPD + ++L AC G + LG
Sbjct: 214 EMQLAGVEPDYVTIISVLAACANLGALGLG 243
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 253/452 (55%), Gaps = 25/452 (5%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W ++I ++ N +A +K ML P+ T +L ACA L +G
Sbjct: 202 RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSL 261
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQ 169
H V G + + ++ L+ +YA C A+++FD + SW ++I+GY K G
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ +AR +FD+M ++ +++++M+ GY+ +EAL F M+ R ++ +V LTA
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTA 381
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGAL QGR +HA +++ +E DI LGTA++DMY KCG ++ A VF M RDV +
Sbjct: 382 CASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTW 441
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
T++I+GLA + +A+E F +M+ +G PN + M
Sbjct: 442 TAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRI 501
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+Y I P ++HYGC++DLLGR+G+L+ A +V+ MPI+P+ + ++L+ACRVH +DL +
Sbjct: 502 LYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQ 561
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
E L++ D +GV+V L NIY + QW K+R ME+ +V+K G S I V G V
Sbjct: 562 CAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQV 621
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+FV ++++ + EI+ +L I LKSL +
Sbjct: 622 HKFVVSDKSHPRILEIIAMLEEISHRLKSLGY 653
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 195/408 (47%), Gaps = 29/408 (7%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVGKIIGF---CSASDIGDLSHGYRLFVCLQYRTTFIW 56
++Q ++ + LT SG L P + ++ C L + LF + +TF++
Sbjct: 12 VRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLF 70
Query: 57 NTMIRGFAEK-NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC---HA 112
+T +R + ++P + F L+++M R+ P+ +TF F+ + + +S L+C HA
Sbjct: 71 DTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHA 130
Query: 113 QVIRLGWESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
+R S FV N L+H+Y AR+ FD +D ++WT LI+G AK G +
Sbjct: 131 ACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLC 190
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+ + + P ++ +SW+++I Y + + +EA+ F M G P+ ++ L+ACA
Sbjct: 191 DTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACA 250
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM---PNRDVFA 288
L L+ GR +H V+ G+ L A+IDMYAKCG A VFD++ P +
Sbjct: 251 KLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ--S 308
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+ ++I G H A LF M++ ++ SM G H G L R +
Sbjct: 309 WNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMT------GYIHSGQL-----REAL 357
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L +R + DN+ + LL AC G + G+ + + +E+ L
Sbjct: 358 LLFMS--MRRHDLRVDNFTVVNLLTACASLGALQQGR-ALHACIEQRL 402
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 126/296 (42%), Gaps = 45/296 (15%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+C G + LF ++ R +N+M+ G+ + +A L+ M R D
Sbjct: 313 IDGYCKH---GHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
+N+T +L ACA L G HA + + E+ ++ LL +Y C +D A +
Sbjct: 370 VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIV 429
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F RDV +WT++I G A +G + K AL
Sbjct: 430 FQRMGKRDVHTWTAMIAGLAFNG-------------------------------MGKAAL 458
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT----AI 261
EHF M+ GF+PN + LTAC+ L++GR Y D I +I +
Sbjct: 459 EHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRL---YFDEMRILYNIHPQIEHYGCM 515
Query: 262 IDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANH---DQSASAIELFMRMQ 313
ID+ + G ++ A + +MP + + S++S H D + A E ++++
Sbjct: 516 IDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLE 571
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 257/462 (55%), Gaps = 25/462 (5%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W ++I ++ N +A +K ML P+ T +L ACA L +G
Sbjct: 202 RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSL 261
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQ 169
H V G + + ++ L+ +YA C A+++FD + SW ++I+GY K G
Sbjct: 262 HLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ +AR +FD+M ++ +++++M+ GY+ +EAL F M+ R ++ +V LTA
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTA 381
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGAL QGR +HA +++ +E DI LGTA++DMY KCG ++ A VF M RDV +
Sbjct: 382 CASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTW 441
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
T++I+GLA + +A+E F +M+ +G PN + M
Sbjct: 442 TAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRI 501
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+Y I P ++HYGC++DLLGR+G+L+ A +V+ MPI+P+ + ++L+ACRVH +DL +
Sbjct: 502 LYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQ 561
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
E L++ D +GV+V L NIY + QW K+R ME+ +V+K G S I V G V
Sbjct: 562 CAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQV 621
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
+FV ++++ + EI+ +L I LKSL + +++ +
Sbjct: 622 HKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVD 663
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 195/408 (47%), Gaps = 29/408 (7%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVGKIIGF---CSASDIGDLSHGYRLFVCLQYRTTFIW 56
++Q ++ + LT SG L P + ++ C L + LF + +TF++
Sbjct: 12 VRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PSTFLF 70
Query: 57 NTMIRGFAEK-NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC---HA 112
+T +R + ++P + F L+++M R+ P+ +TF F+ + + +S L+C HA
Sbjct: 71 DTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHA 130
Query: 113 QVIRLGWESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
+R S FV N L+H+Y AR+ FD +D ++WT LI+G AK G +
Sbjct: 131 ACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLC 190
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+ + + P ++ +SW+++I Y + + +EA+ F M G P+ ++ L+ACA
Sbjct: 191 DTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACA 250
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM---PNRDVFA 288
L L+ GR +H V+ G+ L A+IDMYAKCG A VFD++ P +
Sbjct: 251 KLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ--S 308
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+ ++I G H A LF M++ ++ SM G H G L R +
Sbjct: 309 WNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMT------GYIHSGQL-----REAL 357
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L +R + DN+ + LL AC G + G+ + + +E+ L
Sbjct: 358 LLFMS--MRRHDLRVDNFTVVNLLTACASLGALQQGR-ALHACIEQRL 402
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 126/302 (41%), Gaps = 57/302 (18%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+C G + LF ++ R +N+M+ G+ + +A L+ M R D
Sbjct: 313 IDGYCKH---GHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
+N+T +L ACA L G HA + + E+ ++ LL +Y C +D A +
Sbjct: 370 VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIV 429
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F RDV +WT++I G A +G + K AL
Sbjct: 430 FQRMGKRDVHTWTAMIAGLAFNG-------------------------------MGKAAL 458
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW----------IHAYVDRNGIELDI 255
EHF M+ GF+PN + LTAC+ L++GR IH ++ G
Sbjct: 459 EHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYG----- 513
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANH---DQSASAIELFMR 311
+ID+ + G ++ A + +MP + + S++S H D + A E ++
Sbjct: 514 ----CMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLK 569
Query: 312 MQ 313
++
Sbjct: 570 LE 571
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 240/412 (58%), Gaps = 31/412 (7%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQ 169
H+ ++R G + L+ Y +C + AR++FD + + DV+SW +I+GY KSG
Sbjct: 98 HSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSGD 157
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
++ AR++FD MP +N VSW+ +I Y Q+ +EA+E F MQ+ G P+ ++ L+A
Sbjct: 158 LARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSA 217
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
C LG +D G W+H +V R G+ +I L AIIDMY KCG ++ A VF+ M + + +
Sbjct: 218 CGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTW 277
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSE 325
T++I+G A H A+ELF RM+ E V PN+ +M
Sbjct: 278 TTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVS 337
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y I+P V+HYGC++DLLGRAG L A+ ++++MP + + + GALL A R HGD +LG+
Sbjct: 338 QYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGE 397
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ + L+E + G ++LLSNIYA E+W+ V ++R M D +R VPG S I+VDG+V
Sbjct: 398 QALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVDGMV 457
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQKG 497
EF S + ++ + +I +L I+ ++KS+ +A SL D ++G
Sbjct: 458 HEFTSRDGSHPSLHKIREVLCAINSNIKSV------GHIALLPESLHDVEEG 503
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL+ LF + R W +I +A+ +P +A ++++M P+ +L
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 215
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC D + +G H V+R G ++N ++ +Y C + A ++F+ + ++
Sbjct: 216 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 275
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+WT++I G+A G L EA+E F M+
Sbjct: 276 TWTTMIAGFALHG-------------------------------LGLEAVELFRRMEKEN 304
Query: 216 FRPNHAGIVGALTACAFLGALDQGRW-IHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
PN + L+ C+ +G D GRW V + I+ + +ID+ + GC+ A
Sbjct: 305 VSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEA 364
Query: 275 CSVFDSMP 282
+ MP
Sbjct: 365 RGLIQDMP 372
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 24/224 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F ++ ++ W TMI GFA ++A L+++M + + PN+ TF +L
Sbjct: 257 GSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVL 316
Query: 96 RACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMS 149
C+ D + + I+ E Y +++ L C+ AR L DM
Sbjct: 317 SVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMID----LLGRAGCLMEARGLIQDMP 372
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALE 206
+ W +L+ G + Q + E N+ ++ + N Y + + + E
Sbjct: 373 FKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRE 432
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
M+ G R + GA ++D +H + R+G
Sbjct: 433 LRISMRDRGLR----NVPGA-------SSIDVDGMVHEFTSRDG 465
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 32/111 (28%)
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCI--------ETACS----------------- 276
+H+ + R G D +++ Y CG + ETA S
Sbjct: 97 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSG 156
Query: 277 -------VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+FD MP R+V ++T +I A Q AIE+F RMQ+EG+ P+
Sbjct: 157 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPD 207
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 240/412 (58%), Gaps = 31/412 (7%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQ 169
H+ ++R G + L+ Y +C + AR++FD + DV+SW +I+GY KSG
Sbjct: 94 HSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSGD 153
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
++ AR++FD MP +N VSW+ +I Y Q+ +EA+E F MQ+ G P+ ++ L+A
Sbjct: 154 LARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSA 213
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
C LG +D G W+H +V R G+ +I L AIIDMY KCG ++ A VF+ M + + +
Sbjct: 214 CGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTW 273
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSE 325
T++I+G A H + A+ELF RM+ E V PN+ +M
Sbjct: 274 TTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVS 333
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y I+P V+HYGC++DLLGRAG L A+ ++++MP + + + GALL A R HGD +LG+
Sbjct: 334 QYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGE 393
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ + L+E + G ++LLSNIYA E+W+ V ++R M D +R VPG S I+VDG+V
Sbjct: 394 QALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVDGMV 453
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQKG 497
EF S + ++ + +I +L I+ ++KS+ +A SL D ++G
Sbjct: 454 HEFTSRDGSHPSLHKIREVLCAINSNIKSV------GHIALLPESLHDVEEG 499
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL+ LF + R W +I +A+ +P +A ++++M P+ +L
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC D + +G H V+R G ++N ++ +Y C + A ++F+ + ++
Sbjct: 212 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 271
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+WT++I G+A G S A ++F +M ++N
Sbjct: 272 TWTTMIAGFALHGLGSEAVELFRRMEKEN------------------------------- 300
Query: 216 FRPNHAGIVGALTACAFLGALDQGRW-IHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
PN + L+ C+ +G D GRW V + I+ + +ID+ + GC+ A
Sbjct: 301 VSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEA 360
Query: 275 CSVFDSMP 282
+ MP
Sbjct: 361 RGLIQDMP 368
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 24/224 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F ++ ++ W TMI GFA +A L+++M + + PN+ TF +L
Sbjct: 253 GSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVL 312
Query: 96 RACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMS 149
C+ D + + I+ E Y +++ L C+ AR L DM
Sbjct: 313 SVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMID----LLGRAGCLMEARGLIQDMP 368
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALE 206
+ W +L+ G + Q + E N+ ++ + N Y + + + E
Sbjct: 369 FKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRE 428
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
M+ G R + GA ++D +H + R+G
Sbjct: 429 LRISMRDRGLR----NVPGA-------SSIDVDGMVHEFTSRDG 461
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 32/111 (28%)
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS--------------------- 280
+H+ + R G D +++ Y CG + +A VFD
Sbjct: 93 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSG 152
Query: 281 -----------MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
MP R+V ++T +I A Q AIE+F RMQ+EG+ P+
Sbjct: 153 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPD 203
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 249/421 (59%), Gaps = 11/421 (2%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC--LFVGLICHAQ 113
W + I + +A A + +M + PN+ TF +L AC D L G HA
Sbjct: 57 WTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAY 116
Query: 114 VIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
V +LG ++ + ++ L+ +Y+ C +D A +FD R+ +SW ++I+G ++G++
Sbjct: 117 VRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGE 176
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
A +FD+M E++A+SW++MI G+V+ F++ALE F MQL G P++ I+ L ACA
Sbjct: 177 AIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACAN 236
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGAL G WI+ +V + + +I + ++IDMY++CGCI A VF+ MP R + ++ S+
Sbjct: 237 LGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSM 296
Query: 293 ISGLANHDQSASAIELFMRMQLE---GVVPN-----ESMSEIYGIEPGVQHYGCLVDLLG 344
I G A + + A+E F M+ E G+V + M I P ++HYGCLVDL
Sbjct: 297 IVGFALNGHAEEALEFFNLMRKEGHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYS 356
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404
RAG LE A V+ MP++P+ VLG+LL ACR HGDV L + ++ L E + +VL
Sbjct: 357 RAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVL 416
Query: 405 LSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLL 464
LSNIYA+ +W+G KVR+ M+ + K PG S IE+DG + EFV+G++T+V + I +
Sbjct: 417 LSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYAM 476
Query: 465 L 465
L
Sbjct: 477 L 477
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 22/210 (10%)
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA--FLGALDQ 238
P VSW++ I + + EA F+ MQ+ G RPNH + L+AC L L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 239 GRWIHAYVDRNGIELD-IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G IHAYV + G++ + +++GTA++DMY+KCG ++ A +FD M R+ ++ ++I G
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
+ + AI LF +M + SM G V + G E A + R
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSM------------IGGFV----KKGCFEQALEWFR 213
Query: 358 EMP---IEPDNYVLGALLNACRVHGDVDLG 384
EM +EPD + ++L AC G + LG
Sbjct: 214 EMQLAGVEPDYVTIISVLAACANLGALGLG 243
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 155/411 (37%), Gaps = 106/411 (25%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL------- 85
S G L + +F + R + WNTMI G E +A L+ QM D +
Sbjct: 138 SKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIG 197
Query: 86 ------------------------PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
P+ T +L ACA+ L +GL + V++ ++
Sbjct: 198 GFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKD 257
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N L+ +Y+ C C+ AR++F+ R ++SW S+I G+A
Sbjct: 258 NIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFA---------------- 301
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+NG+ + EALE FN M+ + H+G+V F + + R
Sbjct: 302 ----------LNGHAE-----EALEFFNLMR----KEGHSGLVD--EGLQFFDIMKRTRK 340
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANHD 300
I ++ G ++D+Y++ G +E A +V +MP + + SL++ H
Sbjct: 341 ISPRIEHYG---------CLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHG 391
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-QHYGCLVDLLGRAGMLEAAKKVVREM 359
A L M + ++PG +Y L ++ G + A KV ++M
Sbjct: 392 DVGLAERL--------------MKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKM 437
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A +H ++ + + + HV NIYA
Sbjct: 438 -------------KALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYA 475
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 254/462 (54%), Gaps = 61/462 (13%)
Query: 53 TFIWNTMIRGFAEKNEPI-----KAFALYKQMLRSDFLPNNYTFSFILRACAD-TSCLFV 106
F+ NT+IR A PI +A A + MLR +PN +TF F+L+ACA V
Sbjct: 88 AFLANTLIRAHA--TSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDV 145
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
GL HA ++ G+ + +V N L+H+Y +C
Sbjct: 146 GLQAHAAALKFGFATDQYVSNTLIHMY---SCFG-------------------------- 176
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226
G + AR +FD+MP+++AV+WSAMI GYV+ L +A++ F MQ G + + ++G
Sbjct: 177 GGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGV 236
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L A LGAL+ RW+ +V+R GI + L A+ID AKCG ++ A +VF+ M R V
Sbjct: 237 LAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSV 296
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------S 322
++TS+I LA + A+ +F M++ GV P++ +
Sbjct: 297 VSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDA 356
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
M YGIEP ++HYGC+VD+ GRAGM+E A + VR MPI+P+ + +L++ACR HG ++
Sbjct: 357 MKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLE 416
Query: 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
LG+ SL+ HE +++LSN++A T++W ++RR M ++KVPGCS++E+D
Sbjct: 417 LGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELD 476
Query: 443 GVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
G V EF++G+ ++ ++I ++ + + L+ + +EV
Sbjct: 477 GEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEV 518
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 23 VGKIIGFCSA-----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
+GK + C+A + GD+ +F +Q R+ W ++I A + +A +++
Sbjct: 261 IGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFE 320
Query: 78 QMLRSDFLPNNYTFSFILRACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132
+M + P++ F +L AC+ D C + A + G E ++ +
Sbjct: 321 EMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYF----DAMKVEYGIEPKIEHYGCMVDM 376
Query: 133 YATCNCMDPARKLF-DMSVNRDVISWTSLINGYAKSGQI----SIARQMFDKMPEKNAVS 187
+ ++ A + M + + + W SL++ G++ SI R + + P A +
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEA-N 435
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+ + N + +KE E M G +
Sbjct: 436 YIMLSNVFALTQRWKEKSEIRREMSKRGIK 465
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 161/478 (33%), Positives = 265/478 (55%), Gaps = 31/478 (6%)
Query: 14 SGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
+G L D F + G +A G + ++F + R W M+ + + +A
Sbjct: 179 TGALDDGFVGTALAGAYAA--CGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEAL 236
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
L+ +M S +P+ + +L AC L +G H+ ++ + + L+ LY
Sbjct: 237 LLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLY 296
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
A+C M+ A KL++ +D++S T++++GYA++ ++ IAR +FD MPEK+ VSWSAMI+
Sbjct: 297 ASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMIS 356
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
GYV + EAL FN MQ CG R + ++ ++ACA LG+LD+ +WIHA++ +G+
Sbjct: 357 GYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNK 416
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ + A+IDM+AKCG I A +VF+ MP ++V +TS+IS A H S++ LF +M+
Sbjct: 417 VLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMK 476
Query: 314 LEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGML 349
EG PNE SM + YGIEP +HYGC+VDLLGRA ++
Sbjct: 477 DEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLM 536
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409
+ A ++ M +EP+ + G+LL AC +HGD+ LG + +++ +H+G VLL IY
Sbjct: 537 QEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLLKIY 596
Query: 410 ASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG-----ERTNVLMEEIV 462
++ N ++VR M+ + V K G S +E++ EF +G E + ++++V
Sbjct: 597 MKSDNLNNAQEVRGVMKLHRVSKETGLSWMELNEPFHEFAAGGEKHPESGKIFLQKVV 654
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 140/354 (39%), Gaps = 87/354 (24%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HA +R G FV L YA C C+ RK+FD RDV+SW
Sbjct: 173 HALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSW------------- 219
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
M++ Y Q +KEAL F M+ G P+ + L AC
Sbjct: 220 ------------------GVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPAC 261
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC-------------------- 270
+ L G+ IH+Y+ + + + + +A+I +YA C
Sbjct: 262 GHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSST 321
Query: 271 -----------IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
+E A S+FD MP +DV +++++ISG + +Q A+ LF MQ G+
Sbjct: 322 AMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRS 381
Query: 320 NE--------------SMSEIYGIEPGVQHYG---------CLVDLLGRAGMLEAAKKVV 356
+E S+ + I +++ G L+D+ + G + A V
Sbjct: 382 DEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVF 441
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
EMP++ + ++++A +HGD E + + + V LS +YA
Sbjct: 442 NEMPLK-NVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEV-TFLSLLYA 493
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 157/429 (36%), Positives = 246/429 (57%), Gaps = 32/429 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++KQI +H ++G + K++ F + S GDL++ RLF L + TF +NT+I
Sbjct: 8 MSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLI 67
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC-----LFVGLIC---HA 112
RG+A+ + P + L QM ++ P+ +TF+F+++A + L + + C H
Sbjct: 68 RGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHG 127
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
V++LG+ S+ FV N L+HLYA A ++FD +V DV+SW+ L+ + ++G++
Sbjct: 128 AVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELER 187
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR +FD+MPE++ VSW+ M++ Y Q +EALE + M G RP+ +V ++AC
Sbjct: 188 ARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTN 247
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LG L G +H+Y+D NG + L A+IDMYAKCGC++ A VF+SM + + + S+
Sbjct: 248 LGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSM 307
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYG 328
IS AN+ A LF RM GV P+ ESM +G
Sbjct: 308 ISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHG 367
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
IE ++HYGC+V++LG+AG LE A +++ MP+ ++ V G LL ACR HGDV +G+ V
Sbjct: 368 IEARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVV 427
Query: 389 ESLVERSLD 397
+ L+E LD
Sbjct: 428 KKLLELKLD 436
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 265/499 (53%), Gaps = 47/499 (9%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQI + + + + F K+I + S ++ +F +Q ++NT+I
Sbjct: 30 LNQVKQIHAQVLKANLHRESFVGQKLIA--AFSLCRQMTLAVNVFNQIQDPDVLLYNTLI 87
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +EP+ AF+++ +M S +N+T+ F+L+AC+ + V + HAQV ++G+
Sbjct: 88 RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFC 147
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N L+ Y + AR+LFD RD +SW ++++GY K+G+++ A ++F+KM
Sbjct: 148 LDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKM 207
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P +N VSWS M EA G + + ++ L+ACA G L G+
Sbjct: 208 PARNVVSWSTM-----------EA----------GLKFDDGTVISILSACAVSGLLGLGK 246
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+HA ++R + + A+IDMYAKCG +E A S+F M +DV ++ ++I GLA H
Sbjct: 247 RVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHG 306
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
A++LF RM+ EG VP++ +M YG+ P V+HY
Sbjct: 307 HGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHY 366
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGR G L+ A ++V MP+EP+ + G LL ACR+H L +E + LV+ L
Sbjct: 367 GCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSEL 426
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
G +LSNIYA+ W+ +R M+ ++K G S IEVD V EF +R++
Sbjct: 427 SDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHP 486
Query: 457 LMEEIVLLLFGIDKHLKSL 475
+ I + G+ +H+ L
Sbjct: 487 KSDRIYKTIDGLGQHINKL 505
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 24/185 (12%)
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+L+Q + IHA V + + + +G +I ++ C + A +VF+ + + DV Y +LI
Sbjct: 29 SLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIR 88
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNES--------------MSEIYGIEPGVQHYG--- 337
+ + A +F MQ GV + + + I V+ G
Sbjct: 89 AHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCL 148
Query: 338 ------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
L+D + G L A+++ EMP E D +L+ G+++ E E +
Sbjct: 149 DIFVPNSLIDSYFKLGELGEARRLFDEMP-ERDTVSWNTILDGYVKAGEMNAAFELFEKM 207
Query: 392 VERSL 396
R++
Sbjct: 208 PARNV 212
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 252/482 (52%), Gaps = 87/482 (18%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR---------------------- 116
MLR+D LP+ +FS ILR+CA + +G H Q+++
Sbjct: 1 MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 117 --------LGWESYDFVLNGLL------HLYA----------------------TCNC-- 138
+G D V N + H Y TC C
Sbjct: 61 LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120
Query: 139 --MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM-PEKNAVSWSAMINGY 195
++ AR +FD + +DV+SW ++I+GY KS Q+ A+++F M +N+V+W+ MI+ Y
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
VQ F A+ F MQ +P +V L+ACA LGALD G WIH Y+ +++D+
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+LG A+IDMY KCG +E A VF + +++F + S+I GL + + AI F+ M+ E
Sbjct: 241 VLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKE 300
Query: 316 GVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
G+ P+ M +YG+EPGV+HYGC+VDLLGRAG L+
Sbjct: 301 GIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKE 360
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411
A +++R MP++P++ VLG+LL AC++H D LG++ + L+E G +V LSN+YAS
Sbjct: 361 ALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYAS 420
Query: 412 TEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKH 471
+W+ V R+ M V K PGCS IEV+ +V EFV+G+ ++ +I L I K
Sbjct: 421 LSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKE 480
Query: 472 LK 473
LK
Sbjct: 481 LK 482
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 38/260 (14%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCL-QYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84
I G+C + L LF+ + R + WNTMI + + E A ++++QM +
Sbjct: 145 IDGYCKSKQ---LVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENV 201
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPAR 143
P T +L ACA L +G H IR D VL N L+ +Y C ++ A
Sbjct: 202 KPTEVTMVSLLSACAHLGALDMGEWIHG-YIRTKRLKIDVVLGNALIDMYCKCGALEAAI 260
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
+F +++ W S+I G +G+ +E
Sbjct: 261 DVFHGLSRKNIFCWNSIIVGLGMNGR-------------------------------GEE 289
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAII 262
A+ F M+ G +P+ VG L+ C+ G L G R+ + G+E + ++
Sbjct: 290 AIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMV 349
Query: 263 DMYAKCGCIETACSVFDSMP 282
D+ + G ++ A + +MP
Sbjct: 350 DLLGRAGYLKEALELIRAMP 369
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 163/456 (35%), Positives = 262/456 (57%), Gaps = 24/456 (5%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
+LF + +T WN+MI G+A +AF L+++M P+ +TF +L C+ +
Sbjct: 144 KLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSR 203
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L +G H + G + V N L+ +YA C + A+ +FD + ++V+SWTS+I+
Sbjct: 204 DLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMIS 263
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
YA+ G I +ARQ+FD+MP KN VSW++MI+ Y++ ++EAL+ FN M+ P+ A
Sbjct: 264 AYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEAT 323
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+V L AC+ LG L G+ IH Y+ N + L ++IDMYAKCG + TA +F MP
Sbjct: 324 LVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP 383
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+++ ++ +I LA H AI+LF MQ +G +P+E
Sbjct: 384 GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLY 443
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
M IY + ++HY C+VDLLGR G+L A +++ MP++PD V GALL ACR+H
Sbjct: 444 YFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIH 503
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
G+V++GK+ ++ L+E G++VL+SNIY ++W V+K+R+ M D ++K S
Sbjct: 504 GNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISS 563
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
IE+DG + EF+ ++ + + I +L + HL+S
Sbjct: 564 IEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRS 599
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 195/386 (50%), Gaps = 44/386 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K + + + + G + +GK+I FC+ D GDL + R+F + F++N++I
Sbjct: 1 MRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLI 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ ++PI A L+++M+ S PN +T F+L+AC S + ++ H I+LG
Sbjct: 61 RGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIG 120
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV N L+ +Y C + ARKLFD ++ ++SW S+I GYA G
Sbjct: 121 SLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGN----------- 169
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+KEA F M+ G P+ V L+ C+ LD GR
Sbjct: 170 --------------------WKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGR 209
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
++H ++ G+++DII+ A++DMYAKCG + +A ++FD ++V ++TS+IS A H
Sbjct: 210 YVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHG 269
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
A ++F +M + VV SM Y E Y +DL + +R
Sbjct: 270 SIEVARQIFDQMPGKNVVSWNSMISCYLREG---QYREALDLFNK----------MRNSR 316
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKE 386
+ PD L ++L AC GD+ +GK+
Sbjct: 317 VVPDEATLVSILAACSQLGDLVMGKK 342
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 254/469 (54%), Gaps = 24/469 (5%)
Query: 29 FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88
F S ++ G + RLF + + + +++ + + KA +++ + S P+
Sbjct: 60 FRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDG 119
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+ L A +G + H + R G +S V N L+ +Y C +PAR +FD
Sbjct: 120 FAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDR 179
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+ +D ++W S++ GY K + A F +MP K+ VSW+A+I G+VQ +ALE F
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
M L G RPNH IVG L+ACA +GALD GR IH Y ++ +II+ A++DMYAK
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G I +A SVF+ + +D F +T++IS A+ELF M G++PN
Sbjct: 300 GSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVL 359
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+ M E+Y I+P ++HYGC+VDLLGR G+LE A+ ++ M +EPD
Sbjct: 360 SACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPD 419
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ +LL+AC HG+ L + +++R +GV+VLL N+YA + +W +R+
Sbjct: 420 IVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQ 479
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
M ++ K PGCS IEVDGVV EF+ ++T+ EI + L + +HLK
Sbjct: 480 MLSRKIYKKPGCSWIEVDGVVHEFLVEDKTHDARREIYVTLEIMARHLK 528
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 150/319 (47%), Gaps = 65/319 (20%)
Query: 131 HLYATCNCMDPARKLFDMSV------NRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
HL C + +++ ++ N+ IS + YA+ G+ + A ++FD++P +
Sbjct: 25 HLLTQCKTIRELQRIHAQALTHGLHPNQQSIS-CKIFRSYAEFGRPADAGRLFDEIPHPD 83
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+S++++++ ++++D +A+ F++ G RP+ VGAL+A LG G +H
Sbjct: 84 IISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHG 143
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD------------------------- 279
+ R G++ ++++ A++DMY +CG E A +VFD
Sbjct: 144 LIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDS 203
Query: 280 ------SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSE 325
MP + ++T+LI+G Q A+ELF +M LEG PN + ++
Sbjct: 204 ALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACAD 263
Query: 326 IYGIEPG--VQHYG-------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
I ++ G + YG L+D+ ++G + +A V E+ ++ D +
Sbjct: 264 IGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMK-DAFTWTT 322
Query: 371 LLNACRVHGDVDLGKETVE 389
++++ V G+ G++ VE
Sbjct: 323 MISSFTVQGN---GRKAVE 338
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 255/469 (54%), Gaps = 24/469 (5%)
Query: 29 FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88
F S ++ G + RLF + + + +++ + + KA +++ + S P+
Sbjct: 60 FRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDG 119
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+ L A +G + H + R G +S V N L+ +Y C +PAR +FD
Sbjct: 120 FAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDR 179
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+ +D ++W S++ GY K + A F +MP K+ VSW+A+I G+VQ +ALE F
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
M L G RPNH IVG L+ACA +GALD GR IH Y ++ +II+ A++DMYAK
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G I +A SVF+ + +D F +T++IS A+ELF M G++PN
Sbjct: 300 GSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVL 359
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+ M E+Y I+P ++HYGC+VDLLGR G+LE A+ ++ M +EPD
Sbjct: 360 SACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPD 419
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ +LL+AC HG+ L + + +++R +GV+VLL N+YA + +W +R+
Sbjct: 420 IVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQ 479
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
M ++ K PGCS IEVDGVV EF+ ++++ EI + L + +HLK
Sbjct: 480 MLSRKIYKKPGCSWIEVDGVVHEFLVEDKSHDARREIYVTLEIMARHLK 528
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 150/319 (47%), Gaps = 65/319 (20%)
Query: 131 HLYATCNCMDPARKLFDMSV------NRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
HL C + +++ ++ N+ IS + YA+ G+ + A ++FD++P +
Sbjct: 25 HLLTQCKTIRELQRIHAQALTHGLHPNQQSIS-CKIFRSYAEFGRPADAGRLFDEIPHPD 83
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+S++++++ ++++D +A+ F++ G RP+ VGAL+A LG G +H
Sbjct: 84 IISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHG 143
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD------------------------- 279
+ R G++ ++++ A++DMY +CG E A +VFD
Sbjct: 144 LIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDS 203
Query: 280 ------SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSE 325
MP + ++T+LI+G Q A+ELF +M LEG PN + ++
Sbjct: 204 ALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACAD 263
Query: 326 IYGIEPG--VQHYG-------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
I ++ G + YG L+D+ ++G + +A V E+ ++ D +
Sbjct: 264 IGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMK-DAFTWTT 322
Query: 371 LLNACRVHGDVDLGKETVE 389
++++ V G+ G++ VE
Sbjct: 323 MISSFTVQGN---GRKAVE 338
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 224/414 (54%), Gaps = 56/414 (13%)
Query: 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQ 113
FI N++IR F+ + P F++Y M + LPNN+TF F+L++ AD L G H
Sbjct: 75 FICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGLSEGQCIHTH 134
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
V++LG FD D+ SL+N YA G + +
Sbjct: 135 VVKLG--------------------------QFD-----DIYVQNSLLNVYASCGDMGLC 163
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
++FD+MP ++ VSW+ +I GY + + +AL F MQ G PNH +V AL+ACA
Sbjct: 164 MRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADF 223
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
GAL+ G WIH ++ R+G E D+ILGT++IDMY KCG IE VF SM ++VF + SLI
Sbjct: 224 GALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLI 283
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNES-------------------------MSEIYG 328
GLA A A+ F RM+ EG+ +E M+ Y
Sbjct: 284 KGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHSGMVQMGRQIFGSLMNGKYE 343
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
PGV+HY C++DLL RAG+L+ A +V+ MP EP+ + GA L CR HGD++L +
Sbjct: 344 FFPGVKHYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWGAFLAGCRAHGDLELSEFAA 403
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
LVE + +VLLSNIYA +W+ VEKVRR M++ + K GCS IE++
Sbjct: 404 RKLVELEPGNGAYYVLLSNIYAEMGRWSDVEKVRRLMKEGGLTKDLGCSSIELE 457
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 37/279 (13%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
I +H+ G D + ++ ++ GD+ R+F + +R W +I G+
Sbjct: 131 IHTHVVKLGQFDDIYVQNSLLNVYASC--GDMGLCMRVFDEMPHRDVVSWTVLITGYRSA 188
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
A ++QM + +PN+ T L ACAD L +G+ H + R GWE +D +L
Sbjct: 189 ERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWE-FDVIL 247
Query: 127 -NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
L+ +Y C ++ +F ++V +W SLI G A +AR A
Sbjct: 248 GTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLA------LARS------GAEA 295
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V W F M+ G + + ++ L AC+ G + GR I
Sbjct: 296 VWW-------------------FYRMEQEGIKADEVTLIAVLCACSHSGMVQMGRQIFGS 336
Query: 246 VDRNGIEL--DIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ E + +ID+ A+ G ++ A V MP
Sbjct: 337 LMNGKYEFFPGVKHYACVIDLLARAGILQEAMEVMTRMP 375
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + G +F ++ + F WN++I+G A +A + +M + + T +L
Sbjct: 259 GRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVL 318
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ H+ ++++G + + ++NG + V
Sbjct: 319 CACS-----------HSGMVQMGRQIFGSLMNGKYEFFP------------------GVK 349
Query: 156 SWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMING 194
+ +I+ A++G + A ++ +MP E N V W A + G
Sbjct: 350 HYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWGAFLAG 389
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 249/433 (57%), Gaps = 33/433 (7%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
ML+ P++ T+ F+ +A + +G+ H VI+ G+E FV N L+H+Y +C
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+ ARK+FD + ++++SW S+++GYAK G + +AR +FD MPE++ SWS +I+GY +
Sbjct: 61 IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+ +A+ F M+ G + N +V L ACA LGALD+GR +H Y+ NG EL+++L
Sbjct: 121 GNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLR 180
Query: 259 TAIIDMYAKCGCIETACSVFD--SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
T++IDMYAKCG +E A +VF S+ DV + ++I GLA H +++L+ MQ+ G
Sbjct: 181 TSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAG 240
Query: 317 VVPNE-----------------SMSEIY------GIEPGVQHYGCLVDLLGRAGMLEAAK 353
+ P+E S ++ G+ P +HY C+VD++ RAG + A
Sbjct: 241 IKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAEAY 300
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+ + +MP+EP +LGALL+ C HG +DL + + L+E +H+G +V LSN+YA
Sbjct: 301 QFLCQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVYAIGR 360
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL-------- 465
+W+ +R ME V+K PG S +E+ G F++ ++++ E+I +L
Sbjct: 361 RWDEARIMREAMERRGVKKTPGYSFLEMSGAHHRFIAHDKSHPSSEQIYTMLSFIVSQMQ 420
Query: 466 FGIDKHLKSLCFF 478
FG+ K + C +
Sbjct: 421 FGVLKEGQEHCLY 433
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 19/305 (6%)
Query: 7 IQSHLTVSGTLWDPFAVGKII---GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
I H+ SG D F +I G C GD+ + ++F + WN+M+ G+
Sbjct: 32 IHGHVIKSGFEIDRFVANSLIHMYGSC-----GDIVYARKVFDGTPVKNLVSWNSMVDGY 86
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
A+ A L+ M D ++S ++ A + + ++ G ++ +
Sbjct: 87 AKCGYLDLARGLFDLMPERDV----RSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANE 142
Query: 124 FVLNGLLHLYATCNCMDPARK----LFDMSVNRDVISWTSLINGYAKSGQISIARQMFD- 178
+ +L A +D R L D +++ TSLI+ YAK G + A +F
Sbjct: 143 VTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRG 202
Query: 179 -KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
+ + + + W+AMI G L KE+L+ + MQ+ G +P+ + L+ACA G +
Sbjct: 203 VSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLSACAHGGLVK 262
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT-SLISGL 296
Q ++ + +NG+ ++D+ A+ G + A MP + +L+SG
Sbjct: 263 QASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAEAYQFLCQMPLEPTASMLGALLSGC 322
Query: 297 ANHDQ 301
NH +
Sbjct: 323 MNHGK 327
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/482 (34%), Positives = 260/482 (53%), Gaps = 32/482 (6%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G ++ +F + R WN++I + + +A ++ +M+ S P+ T +
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVN 151
++ ACA L GL HA+V++ D VL N L+ +YA C+ ++ AR++FD
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
R+V+S TS+++GYA++ + AR MF KM ++N VSW+A+I GY Q +EAL F +
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL------DIILGTAIIDMY 265
+ P H L+ACA L L GR H +V + G E DI +G ++IDMY
Sbjct: 373 KRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMY 432
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---- 321
KCG IE VF+ M RD ++ ++I G A + A A+++F +M + G P+
Sbjct: 433 MKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMI 492
Query: 322 --------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
SM E +G+ P HY C+VDLLGRAG L AK ++ MP+
Sbjct: 493 GVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPV 551
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
PD V G+LL AC+VHG++++GK E L+E + G +VLLSN+YA +W V +V
Sbjct: 552 NPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRV 611
Query: 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDG 481
R+ M V K PGCS IEV+ V F+ ++++ ++I +L + + +K + + D
Sbjct: 612 RKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDA 671
Query: 482 NE 483
N+
Sbjct: 672 ND 673
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 163/308 (52%), Gaps = 24/308 (7%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
++R +LPN+ F+ +L +C + + HA+++ + F+ N L+ +Y C+C
Sbjct: 6 LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D ARKLFD R+ +W SLI+ KSG + A ++F MPE + SW++M++G+ Q
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
D F+E+LE+F M F N AL+ACA L L+ G +HA V ++ D+ +G
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+A+IDMY+KCG + A VF M R++ + SLI+ + ++ A+E+F+RM G+
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245
Query: 319 PNE--------SMSEIYGIEPGVQHYG----------------CLVDLLGRAGMLEAAKK 354
P+E + + + ++ G+Q + LVD+ + + A++
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305
Query: 355 VVREMPIE 362
V M I
Sbjct: 306 VFDRMSIR 313
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 169/368 (45%), Gaps = 51/368 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L RLF + WN+M+ GFA+ + ++ + +M R DFL N Y+F L
Sbjct: 95 GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L +G HA V + + + ++ + L+ +Y+ C + A ++F + R+++
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLV 214
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W SLI Y ++G S EALE F M G
Sbjct: 215 TWNSLITCYEQNGPAS-------------------------------EALEVFVRMMDSG 243
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETA 274
P+ + ++ACA L AL +G IHA V + N D++LG A++DMYAKC + A
Sbjct: 244 LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
VFD M R+V + TS++SG A +A +F +M VV
Sbjct: 304 RRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVS--------------- 348
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHGDVDLGKETVESL 391
+ L+ + G E A ++ R + E P +Y G LL+AC D+ LG++ +
Sbjct: 349 -WNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHV 407
Query: 392 VERSLDHE 399
+++ + +
Sbjct: 408 LKQGFEFQ 415
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/417 (36%), Positives = 234/417 (56%), Gaps = 25/417 (5%)
Query: 49 QYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
++R F W M+ F + ++A A++ M + + ++ ACA + + G
Sbjct: 230 EHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGE 289
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
+CH V+R G S V N L+H+Y++C + AR+LFD + D SW S+I+GY K+G
Sbjct: 290 VCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNG 349
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
++ A+ +FD MP+K+ VSWSAMI G V + EAL F+ M+ +P+ +V ++
Sbjct: 350 RVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVIS 409
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC+ L AL+QG+ +H Y+ + + I+LGT++IDMY KCGC+E A VFD + +
Sbjct: 410 ACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPC 469
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGV-VPNES------------------------M 323
+ ++I GLA + ++++F M+ G VPNE M
Sbjct: 470 WNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLM 529
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
Y I P ++HYGC+VDLLGRAG + A+ +++ MP+ PD GALL AC HGD ++
Sbjct: 530 QNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEV 589
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
G+ + LV+ DH+G +LSNIYAS W V+ +R M+ V KV GCS++E
Sbjct: 590 GERVGKKLVKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVE 646
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/444 (23%), Positives = 197/444 (44%), Gaps = 93/444 (20%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG-----DLSHGYRLFVCLQYRTTFIW 56
+ + QI + SG L D +A +++ F +++ L H +LF ++ F
Sbjct: 18 RHLLQIHAQFLASGLLADAYAASRLLLFTTSATAARLLPHPLHHSLQLFGLVRSPNAFTC 77
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
NT+++ + P F LY M + P+ YT + ACA + GL H+ ++
Sbjct: 78 NTLLKAALRQGFPHLCFPLYASMPAA---PDTYTHPLLAAACAARGDVREGLQVHSHSVK 134
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ ++ N L+H+Y+ C C+ AR++FD D +SW +++ Y + G + A ++
Sbjct: 135 HGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKV 194
Query: 177 FDKMPE-------------------------------KNAVSWSAMINGYVQVDLFKEAL 205
F +MPE ++A +W+AM++ + + DLF EAL
Sbjct: 195 FTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEAL 254
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
F+ M+ G+ + A +V + ACA G + G H V R G+ + + +I MY
Sbjct: 255 AVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMY 314
Query: 266 AKC-------------------------------GCIETACSVFDSMPNRDVFAYTSLIS 294
+ C G +E A ++FD MP++D +++++I+
Sbjct: 315 SSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIA 374
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG--VQHY-------- 336
G +++QS+ A+ +F M+ + P++ + S + +E G V Y
Sbjct: 375 GCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNI 434
Query: 337 -----GCLVDLLGRAGMLEAAKKV 355
L+D+ + G +EAA +V
Sbjct: 435 TIVLGTSLIDMYMKCGCMEAALEV 458
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 136/339 (40%), Gaps = 47/339 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + + W+ MI G N+ +A ++ M + P++ T ++
Sbjct: 349 GRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVI 408
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC++ S L G + H + + + + L+ +Y C CM+ A ++FDM +
Sbjct: 409 SACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTP 468
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
W ++I G A +G ++ + MF +M
Sbjct: 469 CWNAVIVGLAMNGLVTRSLDMFSEMEATGTAV---------------------------- 500
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETA 274
PN G L+AC G +++GR + ++ I +I ++D+ + G + A
Sbjct: 501 --PNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREA 558
Query: 275 CSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRM--QLEGVVPNES-----MSEI 326
+ SMP + DV A+ +L+ H S E+ R+ +L + P+ +S I
Sbjct: 559 EDMIQSMPMSPDVPAWGALLGACWKHGDS----EVGERVGKKLVKLDPDHDGFQTMLSNI 614
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
Y E Q C+ DL G AK M +EP +
Sbjct: 615 YASEGMWQ---CVKDLRGSMKQQHVAKVAGCSM-VEPSH 649
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 24/222 (10%)
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
ACA G + +G +H++ ++G ++ L A++ MY+ CGC+ +A VFD+ P D
Sbjct: 114 AACAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAV 173
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNES----------MSEIYGIEPGVQH-- 335
++ ++++ A+++F RM + + E G+ G +H
Sbjct: 174 SWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRD 233
Query: 336 ---YGCLVDLLGRAGMLEAAKKVVREMPIEP---DNYVLGALLNACRVHGDVDLGKETVE 389
+ +V R + A V +M E D V+ +++ AC G + G E
Sbjct: 234 AFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNG-EVCH 292
Query: 390 SLVERSLDHEGVHV--LLSNIYASTEQWNGVEKVRRGMEDNE 429
LV R+ V+V +L ++Y+S + V RR ++ E
Sbjct: 293 GLVVRAGLGSRVNVQNVLIHMYSSCQD---VVAARRLFDNGE 331
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 251/438 (57%), Gaps = 27/438 (6%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLICHA 112
+W + + + + +A A + +M + PN+ TF +L ACAD + F H
Sbjct: 59 LWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHG 118
Query: 113 QVIRLGWES-YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
+ G ++ + V L+ +Y+ C + ARK+F ++ +SW +++NG+ ++G+I
Sbjct: 119 YACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIE 178
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+A Q+FD+MP ++A+SW+A+ING ++ ++ALE F+ MQ G ++ I+ L ACA
Sbjct: 179 LAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACA 238
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LGAL G W+H +V + +I + ++IDMY++CGCIE A VF M R + ++ S
Sbjct: 239 DLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I G A + + ++E F MQ EG P+ ++M ++
Sbjct: 299 IIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVH 358
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
I P ++HYGC+VDL GRAG LE A ++ EMP++P+ VLG+LL ACR HGDV+L +
Sbjct: 359 KITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERL 418
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
++ L + + + +VLLSNIYA+ +W+G VRR M+ V+K PG S +E+DG V E
Sbjct: 419 MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHE 478
Query: 448 FVSGERTNVLMEEIVLLL 465
FV+G+ + + I +L
Sbjct: 479 FVAGDNYHADADNIYSML 496
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 146/367 (39%), Gaps = 91/367 (24%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNE-----------PIK---------- 71
S L H ++F L + + WNTM+ GF E P +
Sbjct: 141 SKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALIN 200
Query: 72 ----------AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
A + QM RS + + +L ACAD L +GL H V+ ++
Sbjct: 201 GLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKD 260
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N L+ +Y+ C C++ AR++F R ++SW S+I G+A
Sbjct: 261 NIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA---------------- 304
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-- 239
+NG+ E+LE F MQ GF+P+ GALTAC+ G +++G
Sbjct: 305 ----------VNGFAD-----ESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLE 349
Query: 240 -----RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLI 293
+ +H R I I+D+Y + G +E A ++ + MP + + SL+
Sbjct: 350 LFDNMKSVHKITPR------IEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLL 403
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAA 352
+ H + L R+ M ++ ++P G +Y L ++ G + A
Sbjct: 404 AACRTHGD----VNLAERL----------MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGA 449
Query: 353 KKVVREM 359
V R M
Sbjct: 450 NNVRRTM 456
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD--QGRWIH 243
V W++ + Y + EA F M+L G PNH + L+ACA + +H
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 244 AYVDRNGIEL-DIILGTAIIDMYAKC-------------------------------GCI 271
Y + G++ +++GTA+IDMY+KC G I
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
E A +FD MP RD ++T+LI+GL H S A+E F +MQ GV
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVA 224
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 251/438 (57%), Gaps = 27/438 (6%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLICHA 112
+W + + + + +A A + +M + PN+ TF +L ACAD + F H
Sbjct: 59 LWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHG 118
Query: 113 QVIRLGWES-YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
+ G ++ + V L+ +Y+ C + ARK+F ++ +SW +++NG+ ++G+I
Sbjct: 119 YACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIE 178
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+A Q+FD+MP ++A+SW+A+ING ++ ++ALE F+ MQ G ++ I+ L ACA
Sbjct: 179 LAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACA 238
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LGAL G W+H +V + +I + ++IDMY++CGCIE A VF M R + ++ S
Sbjct: 239 DLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I G A + + ++E F MQ EG P+ ++M ++
Sbjct: 299 IIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVH 358
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
I P ++HYGC+VDL GRAG LE A ++ EMP++P+ VLG+LL ACR HGDV+L +
Sbjct: 359 KITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERL 418
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
++ L + + + +VLLSNIYA+ +W+G VRR M+ V+K PG S +E+DG V E
Sbjct: 419 MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHE 478
Query: 448 FVSGERTNVLMEEIVLLL 465
FV+G+ + + I +L
Sbjct: 479 FVAGDNYHADADNIYSML 496
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 146/367 (39%), Gaps = 91/367 (24%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNE-----------PIK---------- 71
S L H ++F L + + WNTM+ GF E P +
Sbjct: 141 SKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALIN 200
Query: 72 ----------AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
A + QM RS + + +L ACAD L +GL H V+ ++
Sbjct: 201 GLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKD 260
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N L+ +Y+ C C++ AR++F R ++SW S+I G+A
Sbjct: 261 NIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA---------------- 304
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-- 239
+NG+ E+LE F MQ GF+P+ GALTAC+ G +++G
Sbjct: 305 ----------VNGFAD-----ESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLE 349
Query: 240 -----RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLI 293
+ +H R I I+D+Y + G +E A ++ + MP + + SL+
Sbjct: 350 LFDNMKSVHKITPR------IEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLL 403
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAA 352
+ H + L R+ M ++ ++P G +Y L ++ G + A
Sbjct: 404 AACRTHGD----VNLAERL----------MKHLFKLDPEGDAYYVLLSNIYAAIGKWDGA 449
Query: 353 KKVVREM 359
V R M
Sbjct: 450 NNVRRTM 456
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD--QGRWIH 243
V W++ + Y + EA F M+L G PNH + L+ACA + +H
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 244 AYVDRNGIEL-DIILGTAIIDMYAKC-------------------------------GCI 271
Y + G++ +++GTA+IDMY+KC G I
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
E A +FD MP RD ++T+LI+GL H S A+E F +MQ GV
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVA 224
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/499 (33%), Positives = 259/499 (51%), Gaps = 66/499 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+ +++ + SG +PF +I ++ G + YR+F + R W MI
Sbjct: 67 LKEGEEVHCFVIKSGFRANPFVATTLIDMYASG--GAIHAAYRVFGEMIERNVIAWTAMI 124
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+ + + A L+ D + N S G I VIR
Sbjct: 125 NGYITCCDLVTARRLFDLAPERDIVLWNTMIS--------------GYIEAKDVIR---- 166
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
AR+LFD N+DV+SW +++NGYA +G + ++F++M
Sbjct: 167 ---------------------ARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEM 205
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
PE+N SW+A+I GY + F E L F M + G PN A +V L+ACA LGALD G
Sbjct: 206 PERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLG 265
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+W+H Y + +G + ++ + A++DMYAKCG +ETA VF SM N+D+ ++ ++I GLA H
Sbjct: 266 KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVH 325
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
A A+ LF M++ G P+ +SM++ Y I P ++H
Sbjct: 326 GHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEH 385
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG+L A +R+MPIE D + ALL ACRV+ +V+L + +E L+E
Sbjct: 386 YGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFE 445
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ +V+LSNIY +W V +++ M D +K+PGCSLIEV+ + EF S + +
Sbjct: 446 PKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLDERH 505
Query: 456 VLMEEIVLLLFGIDKHLKS 474
E+I L + K L+S
Sbjct: 506 PEKEQIYGTLRTLTKLLRS 524
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 163/366 (44%), Gaps = 64/366 (17%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+ + +++F + IWN M RG+++ L++QM D +PN +TF IL++
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C + L G H VI+ G+ + FV L+ +YA+ + A ++F + R+VI+W
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T++INGY + AR++FD PE++ V W+ MI+GY++ A E F+ M
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKM------ 174
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
PN D++ +++ YA G + +
Sbjct: 175 PNK---------------------------------DVMSWNTVLNGYASNGDVMACERL 201
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VVPNESM------------- 323
F+ MP R+VF++ +LI G + + + F RM ++G VVPN++
Sbjct: 202 FEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGA 261
Query: 324 ----------SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
+E +G + V L+D+ + G++E A V + M D ++
Sbjct: 262 LDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMD-NKDLISWNTIIG 320
Query: 374 ACRVHG 379
VHG
Sbjct: 321 GLAVHG 326
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 256/462 (55%), Gaps = 28/462 (6%)
Query: 15 GTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
G+L D F ++G + + +GD ++F + R W M+ + + +A
Sbjct: 100 GSLDDGFVRTALVGAYAACGCVGD---ARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEAL 156
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
+ +M S L + + +L AC L G H+ ++ + + L++LY
Sbjct: 157 LQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLY 216
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
A+C M+ A KL++ +D++S T+++ GYA++ + IAR +FD MPEK+ VSWSAMI+
Sbjct: 217 ASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMIS 276
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
GY + EAL FN MQ CG RP+ ++ ++ACA LG+LD+ +WIHA++ NG+
Sbjct: 277 GYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNK 336
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ + A+IDM+AKCG I A ++F+ MP ++V +TS+I+ A H SA+ LF +M+
Sbjct: 337 ILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMR 396
Query: 314 LEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGML 349
EGV PNE SM + YGIEP +HYGC+VDLLGRA ++
Sbjct: 397 NEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLM 456
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409
+ A ++ M + P+ V G+LL AC +HGD+ LG + +++ +H+G VLLS IY
Sbjct: 457 QEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLSKIY 516
Query: 410 ASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ N ++VR M+ V K G S ++++ EF +G
Sbjct: 517 MKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLNEPFHEFTAG 558
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 142/352 (40%), Gaps = 91/352 (25%)
Query: 86 PNNYTFSFILRACADTSCLFVGLI---CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
P +LR+ A C+ G HA R+G FV L+ YA C C+ A
Sbjct: 67 PGPRALPALLRSAA--RCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDA 124
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
RK+FD RDV+SW M++ Y Q +K
Sbjct: 125 RKVFDGMAVRDVVSW-------------------------------GVMLDSYCQTRNYK 153
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EAL F M+ G + + L+AC + L G+ IH+Y+ + I ++ L +A+I
Sbjct: 154 EALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALI 213
Query: 263 DMYAKCGCIETACS-------------------------------VFDSMPNRDVFAYTS 291
++YA C +E A +FD MP +DV ++++
Sbjct: 214 NLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSA 273
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNE--------------SMSEIYGIEPGVQHYG 337
+ISG A+ +Q A+ LF MQ G+ P+E S+ + I +++ G
Sbjct: 274 MISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNG 333
Query: 338 ---------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
L+D+ + G + A + EMP + + +++ A +HGD
Sbjct: 334 LNKILHICNALIDMFAKCGGINLALNIFNEMP-QKNVITWTSMITAFAMHGD 384
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 164/507 (32%), Positives = 265/507 (52%), Gaps = 60/507 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
I+Q+ +H+ +GTL D K++ + I D Y LF L R + W+ M+
Sbjct: 18 HIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDD---AYSLFDGLTMRDSKTWSVMVG 74
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
GFA+ + +A ++++LR P+NYT F++R C D + L +G + H V++ G S
Sbjct: 75 GFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLS 134
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV L+ +YA C ++ A +++F++M
Sbjct: 135 DHFVCASLVDMYAKCIVVEDA-------------------------------QRLFERML 163
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
K+ V+W+ MI Y + + E+L F+ M+ G P+ +V + ACA LGA+ + R+
Sbjct: 164 SKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARF 222
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+ Y+ RNG LD+ILGTA+IDMYAKCG +E+A VFD M ++V +++++I+ H +
Sbjct: 223 ANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGR 282
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
AI+LF M ++PN SM E + + P V+HY
Sbjct: 283 GKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYT 342
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLLGRAG L+ A +++ M +E D + ALL ACR+H ++L ++ SL+E
Sbjct: 343 CMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQ 402
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ G +VLLSNIYA +W V K R M +++K+PG + IEVD +F G+R++
Sbjct: 403 NPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQ 462
Query: 458 MEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EI +L + K L+ + D + V
Sbjct: 463 SKEIYEMLMSLIKKLEMAGYVPDTDFV 489
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 164/479 (34%), Positives = 255/479 (53%), Gaps = 26/479 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DPF +I +A G + LF + +R WN MI G+++ LY++
Sbjct: 150 DPFIQSALIAMYAAC--GRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEE 207
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M S P+ +L ACA L G H + G+ + L+++YA C
Sbjct: 208 MKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGA 267
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
M AR+++D ++ ++ T++++GYAK G + AR +FD+M EK+ V WSAMI+GY +
Sbjct: 268 MHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAES 327
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
EAL+ FN MQ P+ ++ ++ACA +GAL Q +WIH Y D+NG + +
Sbjct: 328 YQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPIN 387
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A+IDMYAKCG + A VF++MP ++V +++S+I+ A H + SAI LF RM+ + +
Sbjct: 388 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIE 447
Query: 319 PN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PN SM + I P +HYGC+VDL RA L A +
Sbjct: 448 PNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAME 507
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
++ MP P+ + G+L++AC+ HG+++LG+ L+E DH+G V+LSNIYA ++
Sbjct: 508 LIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKR 567
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
W+ V VR+ M+ V K CS IEV+ V F+ +R + +EI L + LK
Sbjct: 568 WDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLK 626
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/419 (22%), Positives = 175/419 (41%), Gaps = 87/419 (20%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L + LF + T N ++R F+ P +LY + R+ F + ++F +L+A
Sbjct: 65 LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124
Query: 98 CADTSCLFVGLICHAQVIRLGWESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
+ S L +GL H + G+ D F+ + L+ +YA C + AR LFD +RDV++
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W +I+GY+++ + L+ + M+ G
Sbjct: 185 WNIMIDGYSQNAH-------------------------------YDHVLKLYEEMKTSGT 213
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
P+ + L+ACA G L G+ IH ++ NG + + T++++MYA CG + A
Sbjct: 214 EPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLARE 273
Query: 277 VFDSMPN-------------------------------RDVFAYTSLISGLANHDQSASA 305
V+D +P+ +D+ ++++ISG A Q A
Sbjct: 274 VYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEA 333
Query: 306 IELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYGCLVDL 342
++LF MQ +VP++ + ++ G + L+D+
Sbjct: 334 LQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDM 393
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
+ G L A++V MP + +++NA +HGD D + E++++ GV
Sbjct: 394 YAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGV 451
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 171/500 (34%), Positives = 253/500 (50%), Gaps = 67/500 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G L LF + R WN MI G+A+ +A A +++M R+
Sbjct: 201 ITGYASK---GFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT 257
Query: 86 PNNYTFSFILRACADT-SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
PN T +L ACA + S L +G + + G S ++NGL+ +Y C
Sbjct: 258 PNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKC-------- 309
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
G + A +F+K+ +KN VSW+ MI GY + +KEA
Sbjct: 310 -----------------------GDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEA 346
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN--GIELDIILGTAII 262
L F M PN + L ACA LGALD G+W+HAYVD+N ++ + L T++I
Sbjct: 347 LGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLI 406
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
DMYAKCG + A +FD M + + + ++ISG A H + +A+ LF RM EG VP++
Sbjct: 407 DMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDI 466
Query: 322 -----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
SM + Y + P + HYGC++DL GRAG+ + A+ +V+
Sbjct: 467 TFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKN 526
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
M ++PD + +LL ACR+H ++L + + L E ++ +VLLSNIYA +W V
Sbjct: 527 MEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDV 586
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
K+R + DN ++KVPGCS IEVD VV EF+ G++ + EI +L ID L+ F
Sbjct: 587 AKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFV 646
Query: 479 DDGNEVATEGGSLLDCQKGW 498
D +EV L D + W
Sbjct: 647 PDTSEV------LYDMDEEW 660
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 185/340 (54%), Gaps = 3/340 (0%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ +KQI S + +G FA+ K+I FC+ S GDLS+ LF ++ IWN MI
Sbjct: 41 LQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMI 100
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + P A Y M+ S PN YTF I ++C G HA V++LG E
Sbjct: 101 RGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLE 160
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV L+++YA + AR +FD S RD +S+T+LI GYA G + AR++FD++
Sbjct: 161 HNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEI 220
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG-ALDQG 239
P ++ VSW+AMI+GY Q +EA+ F M+ PN + ++ L+ACA G +L G
Sbjct: 221 PVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLG 280
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W+ ++++ G+ +I L +IDMY KCG +E A ++F+ + +++V ++ +I G +
Sbjct: 281 NWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHM 340
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339
A+ LF RM + PN+ I P + G L
Sbjct: 341 SCYKEALGLFRRMMQSNIDPNDVT--FLSILPACANLGAL 378
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 48/272 (17%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H+Q+I+ G + F L+ L+ A + G +
Sbjct: 48 HSQIIKTGLHNTHFALSKLIEFCAV-----------------------------SPHGDL 78
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
S A +F + N V W+ MI G + ALE++ +M G PN +C
Sbjct: 79 SYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSC 138
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
+ +G+ +HA+V + G+E + + T++I+MYA+ G + A VFD RD ++T
Sbjct: 139 TKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFT 198
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
+LI+G A+ A ELF + + VV +M Y ++G +E
Sbjct: 199 ALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGY----------------AQSGRVE 242
Query: 351 AAKKVVREM---PIEPDNYVLGALLNACRVHG 379
A EM + P+ + ++L+AC G
Sbjct: 243 EAMAFFEEMRRAKVTPNVSTMLSVLSACAQSG 274
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/485 (33%), Positives = 258/485 (53%), Gaps = 26/485 (5%)
Query: 15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFA 74
G + F ++ F +++ G L R F + R WNTMI G+A+ E +A A
Sbjct: 144 GFVQQIFVANALLHFHASA--GSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACA 201
Query: 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA 134
L+ +M L + +T +L AC+ L VG + H ++ G + N LL +Y
Sbjct: 202 LFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYG 261
Query: 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
C + A + FDM ++V++WTS++ AK G + R F++MPE+N VSW+AMI+
Sbjct: 262 KCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISC 321
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254
YVQ E L+ +N M+ G P+ + G L+AC G L G+ IH YV N +
Sbjct: 322 YVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPG 381
Query: 255 IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314
+ L +++DMYA+CG ++TA +F MPN++V ++ +I LA H ++ + F M
Sbjct: 382 VTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVS 441
Query: 315 EGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
+ P+ E+M+ +Y +EP V+HYGC+VDLLGR G L
Sbjct: 442 DAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLA 501
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A ++++M I+PD V GALL ACR+HG+V++GK ++ L+E G+ VL+ N++
Sbjct: 502 KAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFY 561
Query: 411 STEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDK 470
T QW ++K+R+ M++ +K G S IEV ++ EF + + EI + +
Sbjct: 562 ETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVEDLRHESTNEIYAAVDQLSY 621
Query: 471 HLKSL 475
HL SL
Sbjct: 622 HLVSL 626
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 200/420 (47%), Gaps = 51/420 (12%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVGKIIGFC--SASDI-GDLSHGYRLFVCLQYRTTFIW 56
++ + QI +HL V G + A I +C SA D G L H RLF + F++
Sbjct: 23 IQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMY 82
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
NT++R ++ + P +A L++ +L+ LPN +T F+L+AC + L H V++
Sbjct: 83 NTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVK 142
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG+ FV N LLH +A+ +G + +R+
Sbjct: 143 LGFVQQIFVANALLHFHAS-------------------------------AGSLRDSRRF 171
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F +M ++N VSW+ MI GY Q EA F M+ G + +V L AC+ G L
Sbjct: 172 FGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNL 231
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ GR +H ++ +G +D ILG A++DMY KCG + A FD MP ++V +TS++
Sbjct: 232 EVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQ 291
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
A H + + F +M +V +M Y ++ G H +DL R +
Sbjct: 292 AKHGSVDAVRDWFEQMPERNIVSWNAMISCY-VQCGRLHE--TLDLYNR----------M 338
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYASTEQ 414
R + I PD + L +L+AC +GD+ GK + V + + GV +L L ++YA Q
Sbjct: 339 RSLGITPDEFTLAGVLSACGQNGDLASGK-MIHCYVRDNFNDPGVTLLNSLLDMYARCGQ 397
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 227 LTACAFLGALDQGRW---IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
L C + LDQ +H + D + + +I + + G + A +FD +P
Sbjct: 17 LRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPE 76
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQH 335
D F Y +L+ +N D A+ L + G++PNE + + + +E +
Sbjct: 77 PDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAA 136
Query: 336 YGCLVDL 342
+G +V L
Sbjct: 137 HGVVVKL 143
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 170/451 (37%), Positives = 246/451 (54%), Gaps = 57/451 (12%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
T WNT+I G+ P KA + QM + + ++ T L ACA T + VG +CHA
Sbjct: 161 TVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHA 220
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++ G+E NC +SLI+ YAK GQ+
Sbjct: 221 LLVTNGFE---------------INCY----------------MGSSLISMYAKCGQVED 249
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR++FD MP++NAV W++MI+GY Q+ KEA++ F MQ+ G + + A I +++C
Sbjct: 250 ARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQ 309
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+GALD GR++HAY D +G+ DI + ++IDMY+KCG I+ A +F M RD F++T +
Sbjct: 310 MGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWT-V 368
Query: 293 ISGLANHDQSASAIELFMRMQLE-GVVPNE------------------------SMSEIY 327
I G A + S A++LF +M+ E GV+PNE MS IY
Sbjct: 369 IMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIY 428
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GI P ++HYGC+VDLLGRA +L A++ ++EMPI PD + +LL ACR G+V L +
Sbjct: 429 GIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYV 488
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E + + G VLLS +YA+T +W KVR G+ K PGCS IEVDG V E
Sbjct: 489 AERIQVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHE 548
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
F +G+ ++ E I L GI++ L + F
Sbjct: 549 FFAGDESHFETEAIYSTLLGINELLVAESFL 579
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F + R W +MI G+ + + +A L++ M + ++ T S ++
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+C L +G HA G V N L+ +Y+ C + A +F V RD
Sbjct: 305 SSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNF 364
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT +I G+A +G A +F +M E+ G
Sbjct: 365 SWT-VIMGFAANGLSGEALDLFAQMEEEG------------------------------G 393
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
PN +G LT+C+ G ++QG R H GI I ++D+ + + A
Sbjct: 394 VMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEA 453
Query: 275 CSVFDSMP 282
MP
Sbjct: 454 EQFIKEMP 461
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 26/162 (16%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTF 91
S GD+ Y +F + R F W T+I GFA +A L+ QM +PN TF
Sbjct: 343 SKCGDIKKAYDIFCGMVKRDNFSW-TVIMGFAANGLSGEALDLFAQMEEEGGVMPNEITF 401
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCM---------- 139
+L +C+ H ++ G+ + + + G+ CM
Sbjct: 402 LGVLTSCS-----------HGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLL 450
Query: 140 -DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ + + +M + D + W SL+ G++ +A + +++
Sbjct: 451 AEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERI 492
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/457 (36%), Positives = 246/457 (53%), Gaps = 28/457 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN MI GF +A ++ M F P+ T S +L A D L +G++ H VI
Sbjct: 218 WNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVI 277
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS---- 171
+ G S V + L+ +Y C+C ++FD + DV S + I G +++GQ+
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+ RQ+ D+ E N VSW++MI Q EALE F MQ+ G +PN I L AC
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACG 397
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
+ AL G+ H + R GI D+ +G+A+IDMYAKCG I+ + FD +P +++ + +
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNA 457
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I+G A H ++ A+E+F MQ G P+ SMS Y
Sbjct: 458 VIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKY 517
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GIE V+HY C+V LL RAG LE A ++R MP+ PD V GALL++CRVH +V LG+
Sbjct: 518 GIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVA 577
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E L E + G ++LLSNIYAS WN V +VR M++ +RK PGCS IEV V
Sbjct: 578 AEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHM 637
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++G++++ M +I+ L + +K L +F + N V
Sbjct: 638 LLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFV 674
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 186/389 (47%), Gaps = 35/389 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-------FCSASDIGDLSHGYRLFVCLQYRTT 53
+ Q +Q +H+ +G D K++ F A+ + DL +
Sbjct: 29 LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDL---------VPEPNV 79
Query: 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQ 113
F ++T+I F++ ++ A + + QML +P+N ++ACA S L H
Sbjct: 80 FSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGI 139
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
G++S FV + L+H+Y CN + A ++FD DV+SW++L+ YA+ G + A
Sbjct: 140 ASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEA 199
Query: 174 RQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+++F +M + N +SW+ MI G+ L+ EA+ F M L GF P+ I L A
Sbjct: 200 KRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPA 259
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
L L G IH YV + G+ D + +A+IDMY KC C VFD M + DV +
Sbjct: 260 VGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSC 319
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
+ I GL+ + Q S++ LF +++ + G+E V + ++ + G
Sbjct: 320 NAFIFGLSRNGQVESSLRLFRQLKDQ------------GMELNVVSWTSMIACCSQNGRD 367
Query: 350 EAAKKVVREMPI---EPDNYVLGALLNAC 375
A ++ REM I +P++ + LL AC
Sbjct: 368 IEALELFREMQIAGVKPNSVTIPCLLPAC 396
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 24/176 (13%)
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+L Q R HA++ + G+ D L T ++ YA C A V D +P +VF++++LI
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHYG-------- 337
+ Q A+ F +M G++P+ ++ + + ++P Q +G
Sbjct: 87 YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146
Query: 338 -------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
LV + + + A +V M EPD AL+ A G VD K
Sbjct: 147 SDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAKR 201
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 168/457 (36%), Positives = 246/457 (53%), Gaps = 28/457 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN MI GF +A ++ M F P+ T S +L A D L +G++ H VI
Sbjct: 218 WNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVI 277
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS---- 171
+ G S V + L+ +Y C+C ++FD + DV S + I G +++GQ+
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+ RQ+ D+ E N VSW++MI Q EALE F MQ+ G +PN I L AC
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACG 397
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
+ AL G+ H + R GI D+ +G+A+IDMYAKCG I+ + FD +P +++ + +
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNA 457
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I+G A H ++ A+E+F MQ G P+ SMS Y
Sbjct: 458 VIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKY 517
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GIE V+HY C+V LL RAG LE A ++R MP+ PD V GALL++CRVH +V LG+
Sbjct: 518 GIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVA 577
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E L E + G ++LLSNIYAS WN V +VR M++ +RK PGCS IEV V
Sbjct: 578 AEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHM 637
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++G++++ M +I+ L + +K L +F + N V
Sbjct: 638 LLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFV 674
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 186/389 (47%), Gaps = 35/389 (8%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-------FCSASDIGDLSHGYRLFVCLQYRTT 53
+ Q +Q +H+ +G D K++ F A+ + DL +
Sbjct: 29 LSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDL---------VPEPNV 79
Query: 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQ 113
F ++T+I F++ ++ A + + QML +P+N ++ACA S L H
Sbjct: 80 FSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGI 139
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
G++S FV + L+H+Y CN + A ++FD DV+SW++L+ YA+ G + A
Sbjct: 140 ASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEA 199
Query: 174 RQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+++F +M + N +SW+ MI G+ L+ EA+ F M L GF P+ I L A
Sbjct: 200 KRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPA 259
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
L L G IH YV + G+ D + +A+IDMY KC C VFD M + DV +
Sbjct: 260 VGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSC 319
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
+ I GL+ + Q S++ LF +++ + G+E V + ++ + G
Sbjct: 320 NAFIFGLSRNGQVESSLRLFRQLKDQ------------GMELNVVSWTSMIACCSQNGRD 367
Query: 350 EAAKKVVREMPI---EPDNYVLGALLNAC 375
A ++ REM I +P++ + LL AC
Sbjct: 368 MEALELFREMQIAGVKPNSVTIPCLLPAC 396
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 24/176 (13%)
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+L Q R HA++ + G+ D L T ++ YA C A V D +P +VF++++LI
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHYG-------- 337
+ Q A+ F +M G++P+ ++ + + ++P Q +G
Sbjct: 87 YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146
Query: 338 -------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
LV + + + A +V M EPD AL+ A G VD K
Sbjct: 147 SDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAKR 201
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 252/464 (54%), Gaps = 33/464 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD---LSHGYRLFVCLQYRTTFIWN 57
++ +KQI +HL ++ P+A+ ++ + S S+ +F LQ R F++N
Sbjct: 20 VQHLKQIHAHLLMTYLPQSPYAIAPLLEVAATSGCDRDSFFSYACGIFKNLQQRNIFMYN 79
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT--SCLFVGLICHAQVI 115
+MIRG+ P +A Y ++ FL N YTF +++ACA +G + HA VI
Sbjct: 80 SMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVI 139
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
LG+E+ FV++ L+ Y+ + + AR LFD S +DV+ WT +++GY K G I AR
Sbjct: 140 VLGYENDAFVVSALVEFYSLFD-LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARV 198
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE+N +SWSAM+ Y +V F+E L F MQ PN + IV LTACA LGA
Sbjct: 199 LFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSVLTACAHLGA 258
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
+ QG W+H+Y R G++ + IL TA++DMY+KCG IE+A VF+ + N+D A+ ++ISG
Sbjct: 259 ITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISG 318
Query: 296 LANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEP 331
A ++ELF +M G E+ M +Y ++P
Sbjct: 319 FAMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQP 378
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETV 388
+HY C+VDL+ RAGM+E A+K V E D V GA+L+ACR + ++++G
Sbjct: 379 QFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIW 438
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
L L G VL NI++ + ++VR+ + +K
Sbjct: 439 TKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARSKK 482
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 28/464 (6%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K+ +Q+ SH+ G L D F +I +A GDL +F + + WN++I
Sbjct: 427 KEGEQMHSHVIKLGFLLDIFVSNSLIHLYAAC--GDLVCARSIFDEMLVKDVVSWNSLIG 484
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G++++N + AL++ M + + T ++ AC + C + I
Sbjct: 485 GYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMA-DCMVRYIERNHIE 543
Query: 122 YDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
D L N L+ Y + A K+F +++ ++ ++I+ YAK G + A+++FD++
Sbjct: 544 VDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQI 603
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P K+ +SWS+MI Y Q F ++LE F MQ +P+ I L+ACA LGALD G+
Sbjct: 604 PNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGK 663
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH YV RN I+ D I+ ++IDM+AKCGC++ A VF M +D ++ S+I GLAN+
Sbjct: 664 WIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNG 723
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
A+ +F M EG PN E M ++ +EP ++HY
Sbjct: 724 FEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHY 783
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+V +L RAG LE AK + EMP+ PD V LL AC+ HG+V + + + L E
Sbjct: 784 GCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDP 843
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+ G ++LLSNIYAS ++W+ VR+ M D VRK P CS+++
Sbjct: 844 SNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVD 887
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 188/337 (55%), Gaps = 29/337 (8%)
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
++V+SW +I G+A G+I AR +FD+MP +N VSW+ +I+GY + L+ EA+ F +M
Sbjct: 4 KNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHM 63
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G P+ ++ + A + LG + G +H Y + GI D +G ++ID+YAK G +
Sbjct: 64 MAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSV 123
Query: 272 ETACSVFDSMPN-RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
+ + VFD M + R++ ++TS+ISG A H S A+ELF M+ G+ PN
Sbjct: 124 QNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINA 183
Query: 321 --------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
+SM Y I+P ++H+GC++D+LGRAG L A++++ +P+E +
Sbjct: 184 CSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVI 243
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V LL C +G+V++GK ++ + + + G +LSN+ +++ E+ R+ ++
Sbjct: 244 VWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLD 303
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVL 463
+ ++ KVPG +L+ V FV E L +V+
Sbjct: 304 ERKIVKVPGLALV----VTRSFVMMEAVKKLHAHLVV 336
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 188/385 (48%), Gaps = 45/385 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K++ +HL VSG +A+ K+I A DL +++F ++ TTF+WNT++
Sbjct: 324 MEAVKKLHAHLVVSGLHNCQYAMSKVIR-SYALQQSDLVFAHKVFEQIESPTTFLWNTLL 382
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG A+ + P A YK+ P+N TF F+L+ACA T G H+ VI+LG+
Sbjct: 383 RGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFL 442
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N L+HLYA C + AR +FD + +DV+SW SLI GY+
Sbjct: 443 LDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYS--------------- 487
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
Q + FKE L F MQ + + +V ++AC LG
Sbjct: 488 ----------------QRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMAD 531
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+ Y++RN IE+D+ LG +ID Y + G +++A VF M +++ ++I A
Sbjct: 532 CMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGG 591
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
SA ++F ++ + ++ SM Y H+ ++L + ++
Sbjct: 592 NLVSAKKIFDQIPNKDLISWSSMICAYS---QASHFSDSLELF----------RQMQRAK 638
Query: 361 IEPDNYVLGALLNACRVHGDVDLGK 385
++PD V+ ++L+AC G +DLGK
Sbjct: 639 VKPDAVVIASVLSACAHLGALDLGK 663
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 33/249 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ + LF + R W +I G+ +A AL++ M+ P+ T ++
Sbjct: 20 GEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVV 79
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDV 154
A ++ + +G + H ++ G S V N L+ LYA + + K+FD M R++
Sbjct: 80 PAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 139
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SWTS+I+G+A G L EALE F M+
Sbjct: 140 VSWTSIISGFAMHG-------------------------------LSVEALELFAEMRRA 168
Query: 215 GFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G RPN + + AC+ G ++QG + + V I+ +I IIDM + G +
Sbjct: 169 GIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCE 228
Query: 274 ACSVFDSMP 282
A + + +P
Sbjct: 229 AEQIIEGLP 237
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 180/579 (31%), Positives = 280/579 (48%), Gaps = 108/579 (18%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+KQ S L SG F + I+ S DL + LF L F+WNT+IRG
Sbjct: 23 HLKQTTSILITSGLAHHTFFLSDIL----RSATKDLGYTLLLFDRLATPYIFLWNTIIRG 78
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA----DTSCLFVGLICHAQVIRLG 118
F+ ++P Y ++ +P+ +TF +L+A + + F +A +++ G
Sbjct: 79 FSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQF-----YAHIVKFG 133
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ FV N L+ +A C +D +R+LF + +DV+SWT+LING ++G+ A + F
Sbjct: 134 LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFV 193
Query: 179 KMP-----------------------------------EKNAVSW-----SAMINGYVQV 198
+M E V W SA+++ Y +
Sbjct: 194 EMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKC 253
Query: 199 DLFKEALEHFNYMQ-------------------------------LCGFRPNHAGIVGAL 227
+A++ FN M + G PN + + AL
Sbjct: 254 GYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSAL 313
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
TACA LG+LDQGRW+H YVDR+ + L+ LGTA++DMY+KCGC++ A VF+ +P +DV+
Sbjct: 314 TACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY 373
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESM 323
+T++I+GLA + S++ LF +M V PN M
Sbjct: 374 PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLM 433
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
Y +EP V HYGC+VDLLGRAG LE A K + MP+EP V GAL + C +H +L
Sbjct: 434 ICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFEL 493
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
G+ L++ H G ++LL+N+Y+ ++W VRR M+ V K PGCS IEV+G
Sbjct: 494 GEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNG 553
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN 482
V+ EF++ ++++ + ++L + LK + D N
Sbjct: 554 VIHEFIAFDKSHTESINVYMMLESVSAQLKLATYALDSN 592
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 248/451 (54%), Gaps = 56/451 (12%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M+++ P ++TFS +++AC+ S L G H + + G++S+ FV L+ Y
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV-- 196
+ AR++FD RDV +WT++I+ +A++G +S ARQ+FD+MP +N SW+AMI+GY
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120
Query: 197 -----------------------------QVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
Q F+EAL FN MQ G P+ + +
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATII 180
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
+ACA LGALD G+ IH Y G +LD+ +G+A+IDMYAKCG ++ + VF + +++F
Sbjct: 181 SACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLF 240
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SM 323
+ S+I GLA H + A+ +F RMQ E + PN SM
Sbjct: 241 CWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSM 300
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
S + I P ++HYGC+VDLLG+AG+LE A ++VR M +EP++ + GALL C++H ++ +
Sbjct: 301 SRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKI 360
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV-PGCSLIEVD 442
+ V ++ G + LL N+YA +W+ V +R M++ V K PG S IE+D
Sbjct: 361 AQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMD 420
Query: 443 GVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+ +F + +++++ +EI LL +D LK
Sbjct: 421 RKIHQFAASDKSHLASDEIYTLLVELDGQLK 451
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 17/198 (8%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +F L+ + F WN++I G A +A A++ +M R PN TF +L
Sbjct: 222 GSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVL 281
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNG-------LLHLYATCNCMDPARKLF-D 147
AC GL+ + R S DF + ++ L ++ A +L
Sbjct: 282 GACTHA-----GLVEEGRK-RFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRS 335
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDK---MPEKNAVSWSAMINGYVQVDLFKEA 204
M + + + W +L+ G + IA+ ++ + N+ ++ ++N Y +V+ + E
Sbjct: 336 MRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEV 395
Query: 205 LEHFNYMQLCGFRPNHAG 222
M+ G G
Sbjct: 396 ANIRATMKELGVEKTSPG 413
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 163/477 (34%), Positives = 251/477 (52%), Gaps = 28/477 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL+ + + + WN MI G+ A L+++M + T++ ++
Sbjct: 237 GDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVI 296
Query: 96 RACADTSCLFVGLICHAQVIRLGWES-YDFVL---NGLLHLYATCNCMDPARKLFDMSVN 151
ACAD +G HA +++ DF+L N L+ LY +D ARK+F
Sbjct: 297 SACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPV 356
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+D+I+W +L++GY +G++ A+ F +MPEKN ++W+ MI+G Q ++AL+ FN M
Sbjct: 357 KDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQM 416
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+L G+ PN GA+TAC+ LGAL+ GR +HA + G + + +G A+I MYA+CG +
Sbjct: 417 KLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIV 476
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
E A ++F +MP D ++ S+I+ L H AIEL+ +M EG++P+
Sbjct: 477 EAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSAC 536
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
SM E YGI PG HY ++DL RAG AK V+ MP E +
Sbjct: 537 SHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPI 596
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
ALL CR HG++DLG E E L + H+G +VLLSN+YAS +WN V + R+ M D
Sbjct: 597 WEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRD 656
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V+K P CS EV+ V F+ + + + I L ++ +K + + D V
Sbjct: 657 RGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYV 713
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 195/399 (48%), Gaps = 39/399 (9%)
Query: 20 PFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
P + + + S +G+L +F L R T +N MI G++ N+ A L++
Sbjct: 77 PDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFR 136
Query: 78 QMLRSDFLPNNYTFSFILRACADTSCLFVGLIC---HAQVIRLGWESYDFVLNGLLHLYA 134
M ++F P+++TF+ +L A T + C H V++ G E + VLN LL +Y
Sbjct: 137 AMRWANFQPDDFTFASVL--SASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYV 194
Query: 135 TC---------NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
C + M ARKLFD R+ WT+LI GY ++G ++ AR++ D M E+
Sbjct: 195 KCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPG 254
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
++W+AMI+GY+ LF++AL F M+L G + + + ++ACA G G+ +HAY
Sbjct: 255 IAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314
Query: 246 VDRNGIELD----IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+ +N + D + +G +I +Y K G ++ A +F MP +D+ + +L+SG N +
Sbjct: 315 ILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR 374
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
A F +M E + + ++ L + G E A K+ +M +
Sbjct: 375 MEEAKSFFAQMP----------------EKNLLTWTVMISGLAQNGFGEQALKLFNQMKL 418
Query: 362 ---EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
EP++Y + AC V G ++ G++ +V D
Sbjct: 419 DGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHD 457
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 156/336 (46%), Gaps = 31/336 (9%)
Query: 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136
+ +L L N Y L + S + H VI G++ ++N L+ +Y
Sbjct: 2 RNVLDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKS 61
Query: 137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMING 194
+ ARKLFD DVI+ T+LI Y+ G + +AR++F++ P ++ V ++AMI G
Sbjct: 62 SDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITG 121
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD-QGRWIHAYVDRNGIEL 253
Y ++ A+E F M+ F+P+ L+A + + Q +H V + GIE+
Sbjct: 122 YSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEI 181
Query: 254 DIILGTAIIDMYAKCG---------CIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ A++ +Y KC + +A +FD MP R+ F +T+LI+G +
Sbjct: 182 FPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTG 241
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---I 361
A E+ ++M+E +PG+ + ++ G+ E A + R+M +
Sbjct: 242 AREIL-----------DTMTE----QPGIA-WNAMISGYLHHGLFEDALTLFRKMRLLGV 285
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+ D ++++AC G LGK+ +++ L+
Sbjct: 286 QVDESTYTSVISACADGGFFLLGKQVHAYILKNELN 321
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 252/476 (52%), Gaps = 34/476 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ F + +WN MI G+ + +AF L+++M+ P+ +TF+ +L
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVL-------NGLLHLYATCNCMDPARKLFDM 148
ACA+ G H Q IRL DFV N L+ LY+ + A K+FD
Sbjct: 304 SACANAGFFLHGKSVHGQFIRL---QPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDS 360
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+DV+SW ++++GY +SG + A ++F +MP K+ +SW M++GYV L ++AL+ F
Sbjct: 361 MTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLF 420
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
N M+ +P GA+ AC LGAL G+ +HA++ + G E G A++ MYA+C
Sbjct: 421 NQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARC 480
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G ++ A VF MPN D ++ ++IS L H A+ELF +M +G+ P+
Sbjct: 481 GAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTIL 540
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
ESM +GI PG HY L+DLLGRAG + A+ +++ MP EP
Sbjct: 541 TACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPT 600
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ A+L+ CR++GD++LG + L + +H+G ++LLSN Y++ +W +VR+
Sbjct: 601 PAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKL 660
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
M D V+K PGCS IEV V F+ G+ + E+ L + ++ L + D
Sbjct: 661 MRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPD 716
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 167/364 (45%), Gaps = 34/364 (9%)
Query: 46 VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSC 103
V + R T + N MI FA + A ++++ +L SD P++Y+F+ +L A
Sbjct: 115 VPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHD 174
Query: 104 LFVG--LICHAQVIRLGWESYDFVLNGLLHLYATCNC---MDPARKLFDMSVNRDVISWT 158
L V H V +LG + V N L+ LY C+ ARK+ D +D ++WT
Sbjct: 175 LAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWT 234
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
+++ G+ + G + AR F+++ + V W+AMI+GYVQ + EA E F M P
Sbjct: 235 TIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPP 294
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII------LGTAIIDMYAKCGCIE 272
+ L+ACA G G+ +H R ++ D + + A++ +Y+K G I
Sbjct: 295 DEFTFTSLLSACANAGFFLHGKSVHGQFIR--LQPDFVPEAALPVNNALVTLYSKSGKIA 352
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332
A +FDSM +DV ++ +++SG +A +F M P +S + G
Sbjct: 353 VATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEM------PYKSELSWMVMVSG 406
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVE 389
H G+ E A K+ +M ++P +Y + AC G + GK+
Sbjct: 407 YVH----------GGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHA 456
Query: 390 SLVE 393
LV+
Sbjct: 457 HLVQ 460
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 30/259 (11%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAV 186
LLHLY + LF + ++ TSL++ YA +G++ + FD +P ++ V
Sbjct: 66 LLHLYTLSPDLATPAVLF--RADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTV 123
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLG--ALDQGRWI 242
+AMI+ + + L A+ F + RP+ L+A + A+ +
Sbjct: 124 LHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQL 183
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKC---GCIETACSVFDSMPNRDVFAYTSLISGLANH 299
H V + G + + A+I +Y KC G A V D MP +D +T+++ G
Sbjct: 184 HCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRK 243
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+A F + E V +M Y VQ +GM A ++ R M
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGY-----VQ-----------SGMCAEAFELFRRM 287
Query: 360 ---PIEPDNYVLGALLNAC 375
I PD + +LL+AC
Sbjct: 288 VSKRIPPDEFTFTSLLSAC 306
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 161/488 (32%), Positives = 265/488 (54%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G + +++F + + WN I G+AE +A L+K+M++++
Sbjct: 176 ITGYASR---GXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR 232
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T +L ACA + + +G H+ + G+ ++N L+ LY+ C
Sbjct: 233 PDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKC--------- 283
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F + K+ +SW+ +I GY ++L+KEAL
Sbjct: 284 ----------------------GELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEAL 321
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIID 263
F M G +PN ++ L+ACA LGA+D GRWIH Y+D+ G+ L T++ID
Sbjct: 322 LLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 381
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VFDSM NR + ++ ++I G A H ++ +A ++F RM+ G+ P++
Sbjct: 382 MYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDIT 441
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM+ Y + P ++HYGC++DL G +G+ + A+K++ M
Sbjct: 442 FVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTM 501
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + +LL AC++HG+V+LG+ ++L++ ++ G +VLLSNIYA+ E+WN V
Sbjct: 502 EMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVA 561
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
K R + D ++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F
Sbjct: 562 KTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 621
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 622 DTSEVLQE 629
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 248/506 (49%), Gaps = 69/506 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTM 59
++ ++ I + + +G +A+ K++ C S D L + +F +Q IWNTM
Sbjct: 15 LQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTM 74
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG A ++P+ A LY M+ LPN+YTF F+L++CA + G H QV++ G+
Sbjct: 75 FRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGF 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ ++ L+ +Y ++ A+K+ D S +RDV+S+T+LI GYA G I A +MFD+
Sbjct: 135 DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDE 194
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ VSW+A I+GY + +KEALE F M RP+ + +V L+ACA G+++ G
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG 254
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H++++ +G ++ + A+ID+Y+KCG +ETAC +F + N+DV ++ +LI G +
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314
Query: 300 DQSASAIELFMRMQLEGVVPNESM-------------------------SEIYGIEPGVQ 334
+ A+ LF M G PN+ + G+
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374
Query: 335 HYGCLVDLLGRAGMLEAAKKV----------------------------------VREMP 360
L+D+ + G +EAA++V +R+
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNG 434
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGVHVLLSNIYASTEQW 415
IEPD+ LL+AC G +DLG+ S+ L+H G + ++ + +
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMI---DLXGHSGLF 491
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIEV 441
EK+ ME E V CSL++
Sbjct: 492 KEAEKMINTME-MEPDGVIWCSLLKA 516
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 167/523 (31%), Positives = 270/523 (51%), Gaps = 62/523 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ + KQ + L + L +P K+I F + S GDL++ +LF +Q FI NTMI
Sbjct: 24 ISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMI 83
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+A P +A +LY M+ +NYT+ F+L ACA + +G H +V++ G+
Sbjct: 84 RGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG 143
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV+N L+ Y C A +FD S RDV++W +IN + G A + D+M
Sbjct: 144 SDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEM 203
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+L RP+ +V + ACA LG L++G+
Sbjct: 204 ------------------------------TKLDNLRPDEVTMVSLVPACAQLGNLERGK 233
Query: 241 WIHAY---VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
++H+Y +D+ I D++L TA++DMYAKCG I+ A VF M R+VF + +LI GLA
Sbjct: 234 FLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLA 293
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H AI LF +M+ + ++P+ ++M + IEP +
Sbjct: 294 MHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRM 353
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLL RA ++ A + MPI+ ++ + LL ACR G DL ++ ++E
Sbjct: 354 EHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIE 413
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
D G +V+LSN+YA QW+ K+R+ M++ + K PGCS IE++G++ +FV+G+R
Sbjct: 414 LEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDR 473
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQK 496
+++ E+I ++ + + + DG V L D ++
Sbjct: 474 SHLQTEQIYAMIEEMTRRVNL-----DGGHVPGTANVLFDIEE 511
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 167/421 (39%), Positives = 242/421 (57%), Gaps = 33/421 (7%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLLHLYATCNCMDPARK 144
P++ TF F+ RA A + + HAQ +R G D V N L+H+YA C AR+
Sbjct: 60 PSHLTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARR 119
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
LFD + +SW +L++GYAK + AR++F +MP+++ VSWSAMI+G V+ +EA
Sbjct: 120 LFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREA 179
Query: 205 LEHFNYMQLC-----GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
L F M+ G R N +V L ACA LG L +GR +H Y++ +G L+I L T
Sbjct: 180 LAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLAT 239
Query: 260 AIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+++DMYAKCG I A VF ++P + DV + ++I GLA H S ++++F +M+ GV
Sbjct: 240 SLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGV 299
Query: 318 VPNE-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
VP+E E + P V+HY CLVD+LGRAG LE A
Sbjct: 300 VPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYG 359
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
VV+ MP++P VLGALLNAC +HG V+LG+ LV DH+G ++ LSNIYA +
Sbjct: 360 VVKSMPMKPSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARR 419
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI--VLLLFGIDKHL 472
W +K R+ ME+ V+KVPG S I+V +C F++ ++T+ EI +L L +D +
Sbjct: 420 WQEAKKARKVMEERGVKKVPGFSEIDVGRGLCRFIAQDKTHPGSAEIYALLKLIAMDMKM 479
Query: 473 K 473
K
Sbjct: 480 K 480
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 38/255 (14%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM----LRSDFL-PNNYTF 91
DL R+F + R W+ MI G + E +A A+++ M R D + N+ T
Sbjct: 144 DLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTM 203
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
+L ACA L G H + E + F LN L
Sbjct: 204 VSVLGACAHLGDLVRGRKMHRYL-----EEHGFPLNIRL--------------------- 237
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFN 209
TSL++ YAK G I A ++F +P + + W+A+I G + +E+L+ F
Sbjct: 238 -----ATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQ 292
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ G P+ + L+AC G +D+ ++ + + ++D+ + G
Sbjct: 293 KMEHAGVVPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAG 352
Query: 270 CIETACSVFDSMPNR 284
+E A V SMP +
Sbjct: 353 RLEEAYGVVKSMPMK 367
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 165/469 (35%), Positives = 248/469 (52%), Gaps = 44/469 (9%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+Q+ +H+T G L D F +I +A G+L + +F + + WN++I G++
Sbjct: 107 EQMHNHITKLGLLSDIFVSNSLIHLYAAC--GNLCYARSVFDEMVVKDVVSWNSLICGYS 164
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC--------ADTSCLFVGLICHAQVIR 116
+ N AL+K M + T ++ AC AD ++ C +
Sbjct: 165 QCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVY 224
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSVNRDVISWTSLINGYAKSGQISIARQ 175
LG N L+ + + A K+F +M V R++++ ++I YAK I AR+
Sbjct: 225 LG--------NTLVDYFGRRGQLQSAEKVFFNMKV-RNIVTMNAMIAAYAKGQDIVSARK 275
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD++P+K+ +SWS+MI+GY Q + F +ALE F MQ +P+ I +++CA LGA
Sbjct: 276 IFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGA 335
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
LD G+W+H YV RN I+ D I+ ++IDMY KCG + A VF M +D ++ S+I G
Sbjct: 336 LDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIG 395
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
LAN+ ++ LF M EG PN ESM +Y +EP
Sbjct: 396 LANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEP 455
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++HYGC+VDLLGRAG LE A + + EMPI+PD V LL +C HGDV + + + L
Sbjct: 456 QMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKL 515
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
E + G + LLSN YAS +W+ VR+ M D +VRK PGCS +E
Sbjct: 516 NELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 189/388 (48%), Gaps = 51/388 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ IK++ ++ VSG +A+ K++ A DL +++F ++ TTF+WN +I
Sbjct: 1 MEAIKRLHAYYIVSGLYNCHYAMSKVLR-SYAILQPDLVFAHKVFDQIEAPTTFLWNILI 59
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG A+ + P A A YK+ +P+N TF FIL+ACA + L G H + +LG
Sbjct: 60 RGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLL 119
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV N L+HLYA C + AR +FD V +DV+SW SLI GY+
Sbjct: 120 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYS--------------- 164
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
Q + FK+ L F MQ G + + ++ ++AC LG
Sbjct: 165 ----------------QCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMAD 208
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
++ Y++ IE+D+ LG ++D + + G +++A VF +M R++ ++I+ A
Sbjct: 209 YMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQ 268
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM- 359
SA ++F ++ + ++ SM Y +A A ++ R+M
Sbjct: 269 DIVSARKIFDQIPKKDLISWSSMISGY----------------SQANHFSDALEIFRQMQ 312
Query: 360 --PIEPDNYVLGALLNACRVHGDVDLGK 385
++PD V+ +++++C G +DLGK
Sbjct: 313 RAKVKPDAIVIASVVSSCAHLGALDLGK 340
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 24/247 (9%)
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
A ++FD++ W+ +I G Q D +A+ + Q G P++ L ACA
Sbjct: 40 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+ AL++G +H ++ + G+ DI + ++I +YA CG + A SVFD M +DV ++ SL
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE----------------SMS-------EIYGI 329
I G + ++ + LF MQ EGV ++ SM+ E Y I
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCI 219
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
E V LVD GR G L++A+KV M + + + A++ A D+ ++ +
Sbjct: 220 EVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVR-NIVTMNAMIAAYAKGQDIVSARKIFD 278
Query: 390 SLVERSL 396
+ ++ L
Sbjct: 279 QIPKKDL 285
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 167/484 (34%), Positives = 270/484 (55%), Gaps = 60/484 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGK--IIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWN 57
+ +++QI + +G +GK I S +S+ +++F ++ FIWN
Sbjct: 30 LTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIR 116
T+IRG+AE + A +LY++M S F+ P+ +T+ F+L+A + + +G H+ VIR
Sbjct: 90 TLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIR 149
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ S +V N LLHLYA C + A K+FD +D+++W S+ING+A++G+
Sbjct: 150 SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK------- 202
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
PE EAL + M L G +P+ IV L+ACA +GAL
Sbjct: 203 ----PE--------------------EALALYTEMDLKGIKPDGFTIVSLLSACAKIGAL 238
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G+ H Y+ + G+ ++ ++D+YA+CG +E A ++FD M +++ ++TSLI GL
Sbjct: 239 TLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 297 ANHDQSASAIELFMRMQ-LEGVVPNE------------------------SMSEIYGIEP 331
A + AIELF M+ EG++P E MSE Y IEP
Sbjct: 299 AVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEP 358
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++H+GC+VDLL RAG ++ A + + +MP++P+ + LL AC VHGD DL + +
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKI 418
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ +H G +VLLSN+YAS ++W+ V+K+R+ M + VRKVPG SL+EV V EF+ G
Sbjct: 419 LQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMG 478
Query: 452 ERTN 455
++++
Sbjct: 479 DKSH 482
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 233 LGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGC---IETACSVFDSMPNR-DVF 287
+ +L + R IHA+ RNG+ + D LG +I + A VF + +VF
Sbjct: 27 VSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVF 86
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
+ +LI G A S SA+ L+ M+ G V EP Y L+ +G+
Sbjct: 87 IWNTLIRGYAEIGNSVSAVSLYREMRASGFV-----------EPDTHTYPFLLKAVGKMA 135
Query: 348 ---MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+ E VV YV +LL+ GDV + + + E+ L
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDL 187
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 167/472 (35%), Positives = 260/472 (55%), Gaps = 30/472 (6%)
Query: 29 FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88
+ SA +GD R F + R WN+MI G+A+ + +A AL+ +M R FL +
Sbjct: 90 YASAGSLGD---SRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDE 146
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG-LLHLYATCNCMDPARKLFD 147
+T + +L AC+ L G + H ++ G D +L G L+ +Y+ C + AR+ F+
Sbjct: 147 FTLASLLLACSQEGNLEFGRLVHCLMLVSG-SPVDLILGGALVDMYSKCGDLCMARRCFE 205
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
M + V+SWTS++ K G + AR FD MPE+N VSW+ MI+ YVQ + EAL+
Sbjct: 206 MMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDL 265
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
+ MQ G P+ A +V L+AC +G L G+ +H Y+ N DI L +++DMYAK
Sbjct: 266 YKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAK 325
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
CG ++TA +F M NR+V ++ +I GLA H ++ AI F R + P+
Sbjct: 326 CGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFF-RSMVRNTSPDGITFVAL 384
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
ESM +Y ++ V+HY C+VDLLGR G LE A +++EMP++P
Sbjct: 385 LSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKP 444
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
D V GALL ACR+HG+V +GK+ ++ L+E G+ VL+SN+ T QW ++++R+
Sbjct: 445 DVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRK 504
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
M++ RK G S IE++ + EF + + EI ++ + HL S+
Sbjct: 505 LMKERGTRKDMGVSSIEINNSIHEFGVEDIRHESSSEIYAVVDQLSYHLISV 556
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 47/378 (12%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
++NT+ R + + P +A L++ MLR LPN +T F+++AC L H
Sbjct: 12 MYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALAVHGVA 71
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
++LG+ FV N LLH YA +G + +R
Sbjct: 72 LKLGFVGQVFVANALLH-------------------------------SYASAGSLGDSR 100
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+ FD+M +N VSW++MI GY Q +EA F M+ GF + + L AC+ G
Sbjct: 101 RFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEG 160
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L+ GR +H + +G +D+ILG A++DMY+KCG + A F+ MP + V ++TS++
Sbjct: 161 NLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLC 220
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
H +A F M V +M Y ++ G H L+ K+
Sbjct: 221 AQTKHGSVDAARCWFDHMPERNTVSWNTMISCY-VQRGQYHEA-----------LDLYKQ 268
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYAST 412
+ P PD L +L+AC GD+ +GK V + ++ + + ++ L ++YA
Sbjct: 269 MQSHGP-APDEATLVPVLSACGRIGDLTVGK-MVHLYIRDNIHNPDISLINSLLDMYAKC 326
Query: 413 EQWNGVEKVRRGMEDNEV 430
Q + ++ R M + V
Sbjct: 327 GQVDTAIRLFREMCNRNV 344
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 24/243 (9%)
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
MFD + + + V ++ + Y D +EAL M G PN + + AC A
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
D +H + G + + A++ YA G + + FD M R+V ++ S+I G
Sbjct: 61 WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHY----------- 336
A + A LF M+ +G + +E + S+ +E G +
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180
Query: 337 ----GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
G LVD+ + G L A++ MPI+ ++L A HG VD + + +
Sbjct: 181 LILGGALVDMYSKCGDLCMARRCFEMMPIK-SVVSWTSMLCAQTKHGSVDAARCWFDHMP 239
Query: 393 ERS 395
ER+
Sbjct: 240 ERN 242
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 156/467 (33%), Positives = 244/467 (52%), Gaps = 55/467 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G +++ + +F C + F+WNT+IRG++ + PI A ALYK M PN+YTF
Sbjct: 12 SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
F+L AC L G H+Q+++ G + +LNGL+ LYA C CMD
Sbjct: 72 FVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMD------------ 119
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
A MFD+MPE ++ SWS M++GY Q E L+ MQ
Sbjct: 120 -------------------YACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQ 160
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+ + + C LG LD G+W+H+Y+D+ G+++D++LGTA++ MY+KCG ++
Sbjct: 161 AENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLD 220
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
A VF M RDV ++ +I+G A H A++LF M+ ++PN
Sbjct: 221 NALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYS 280
Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
E+M Y I P ++HYGC+VDL RAGM+ A K ++ MPIEP+ +
Sbjct: 281 HSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLW 340
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
LL AC+ HG LG+ +++ +V +SN+YAS +W+ V +VR M++
Sbjct: 341 RTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEK 400
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
+K G S IE++ +V +F+ GE ++ E+I +L + + LK +
Sbjct: 401 APKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQV 447
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 18/188 (9%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K + S++ G D ++G S G L + ++F + R W+ MI G+A
Sbjct: 188 KWVHSYIDKEGVKIDVVLGTALVGM--YSKCGSLDNALKVFQGMAERDVTTWSIMIAGYA 245
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
KA L+ M RS +PN TF+ +L A + + + G Q+ W Y
Sbjct: 246 IHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKG----HQIFETMWTEYKI 301
Query: 125 V-----LNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLI-----NGYAKSGQISIA 173
++ L+ + A K M + +V+ W +L+ +GY G+ I+
Sbjct: 302 TPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGE-HIS 360
Query: 174 RQMFDKMP 181
R++ P
Sbjct: 361 RKILKLDP 368
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 179/591 (30%), Positives = 285/591 (48%), Gaps = 100/591 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ + KQ + L + L +P K+I F + S GDL++ +LF +Q FI NTMI
Sbjct: 24 ISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMI 83
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+A P +A +LY M+ +NYT+ F+L ACA + +G H +V++ G+
Sbjct: 84 RGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG 143
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV+N L+ Y C A +FD S RDV++W +IN + G A + D+M
Sbjct: 144 SDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEM 203
Query: 181 P----------------------------------------EKNAVSWSAMINGYVQVDL 200
++N +A+++ Y + D
Sbjct: 204 TKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDD 263
Query: 201 FKEALEHFNY-------------------------------MQLCGFRPNHAGIVGALTA 229
+ A E FN MQL + +VG L+A
Sbjct: 264 IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSA 323
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA GALDQG++IH +D+ I D++L TA++DMYAKCG I+ A VF M R+VF +
Sbjct: 324 CAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 383
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
+LI GLA H AI LF +M+ + ++P+ ++M
Sbjct: 384 NALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN 443
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+ IEP ++HYGC+VDLL RA ++ A + MPI+ ++ + LL ACR G DL +
Sbjct: 444 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAE 503
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ ++E D G +V+LSN+YA QW+ K+R+ M++ + K PGCS IE++G++
Sbjct: 504 KIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMI 563
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQK 496
+FV+G+R+++ E+I ++ + + + DG V L D ++
Sbjct: 564 HQFVAGDRSHLQTEQIYAMIEEMTRRVNL-----DGGHVPGTANVLFDIEE 609
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 266/485 (54%), Gaps = 64/485 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWD--PFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNT 58
M+ ++Q+ +H+ FA+ KI+ FC+ S G++++ +F + + F WN+
Sbjct: 1 MRVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNS 60
Query: 59 MIRGFAE----KNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQ 113
+I+G+++ EPI L+K++ + + +PN++T +F+L+ACA + GL H+
Sbjct: 61 LIKGYSQIHTLSKEPI---FLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSH 117
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
V++ G+ S FV L++ Y C + ARK+F+ R++++WT++I+G+A+ G +
Sbjct: 118 VLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVD-- 175
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
EA+E F MQ G +P+ +V ++ACA
Sbjct: 176 -----------------------------EAMELFREMQKAGIQPDAMTLVSVVSACAVA 206
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
GALD G W+HAY+++ + D+ L TA++DMYAKCGCIE A VF MP +D A++S+I
Sbjct: 207 GALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMI 266
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIE 330
G A H + AI+ F +M V P+ S+ +GIE
Sbjct: 267 MGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIE 326
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P V+HYGC VDLL R+G++E A ++ M I P+ +LL C+ ++LG+
Sbjct: 327 PSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARY 386
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
L+E + ++++SN+Y+S QW + ++R+ M++ ++ VPGCS IEVDGVV EFV
Sbjct: 387 LLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVM 446
Query: 451 GERTN 455
G++++
Sbjct: 447 GDQSH 451
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 257/487 (52%), Gaps = 31/487 (6%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
++G+ D+G +F + + +WN MI G+ ++AF L+++M+
Sbjct: 235 VVGYVRRGDVGA---ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVP 291
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW----ESYDFVLNGLLHLYATCNCMDP 141
+ +TF+ +L ACA+ G H Q+ RL E+ V N L+ LY+ C +
Sbjct: 292 LDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAV 351
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
AR++FD ++DV+SW ++++GY +S + A ++F++MP KN +SW M++GYV
Sbjct: 352 ARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFS 411
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
++AL+ FN M+ +P GA++AC LG+L G+ +H ++ + G E G A+
Sbjct: 412 EDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNAL 471
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
I MYA+CG ++ A +F MPN D ++ ++IS L H A+ELF RM EG+ P+
Sbjct: 472 ITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR 531
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
ESM +GI PG HY L+DLLGRAG + A+ +++
Sbjct: 532 ISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIK 591
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP EP + A+L+ CR GD++LG + L + + H+G ++LLSN Y++ +W
Sbjct: 592 TMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVD 651
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+VR+ M D V+K PGCS IE V FV G+ + ++ L + ++ L +
Sbjct: 652 AARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGY 711
Query: 478 FDDGNEV 484
D V
Sbjct: 712 VPDTKVV 718
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 182/397 (45%), Gaps = 27/397 (6%)
Query: 11 LTVSGTLW--DPFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRGFAEK 66
L + TL+ DP V + + G L F V R T + N +I +A
Sbjct: 75 LPAAATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARA 134
Query: 67 NEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQ--VIRLGWESYD 123
+ A A+++ +L S L P++Y+F+ +L A + V Q V++ G
Sbjct: 135 SHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVL 194
Query: 124 FVLNGLLHLYATCNCMDP---ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V N L+ LY C ++ ARK+ D ++D ++WT+++ GY + G + AR +F+++
Sbjct: 195 SVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEV 254
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K V W+AMI+GYV + EA E F M L + L+ACA G G+
Sbjct: 255 DVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGK 314
Query: 241 WIHAYVDR---NGI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+H + R N + E + + A++ +Y+KCG I A +FD+M ++DV ++ +++SG
Sbjct: 315 SVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGY 374
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
A+E+F M P ++ + G H G D L + A
Sbjct: 375 VESSCLDKAVEVFEEM------PYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED--- 425
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
++P +Y ++AC G + GK+ LV+
Sbjct: 426 ----VKPCDYTYAGAISACGELGSLKHGKQLHGHLVQ 458
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 135/316 (42%), Gaps = 31/316 (9%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
+LR + T S LRA CL L+ A L + + L+HLY
Sbjct: 21 LLRRLAASRSLTSSSFLRAL---RCLHARLLTSAL---LHAPPHPHLTLRLIHLYTLSGD 74
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYV 196
+ A LF + ++ TSL+ YA +G++ A FD +P+ ++ V +A+I+ Y
Sbjct: 75 LPAAATLF--RADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYA 132
Query: 197 QVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLG--ALDQGRWIHAYVDRNGIEL 253
+ A+ F + G RP+ L+A L ++ + V ++G
Sbjct: 133 RASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGG 192
Query: 254 DIILGTAIIDMYAKCGCIET---ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+ + A++ +Y KC +E A V D MP++D +T+++ G +A +F
Sbjct: 193 VLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFE 252
Query: 311 RMQLE-GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ ++ VV N +S G H G +V+ E +++V E + D +
Sbjct: 253 EVDVKFDVVWNAMIS-------GYVHSGMVVE------AFELFRRMVLER-VPLDEFTFT 298
Query: 370 ALLNACRVHGDVDLGK 385
++L+AC G GK
Sbjct: 299 SVLSACANAGFFAHGK 314
>gi|218193370|gb|EEC75797.1| hypothetical protein OsI_12731 [Oryza sativa Indica Group]
Length = 523
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 243/477 (50%), Gaps = 28/477 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++Q+ + L SG DP A + + FC A D D ++ RL F+WNT I
Sbjct: 48 MAHLRQLHAALVKSGLARDPIAASRAVAFC-AGDGRDAAYAARLVRHHPRPNAFMWNTAI 106
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A+ P A AL+ ML S P TF + A A G H V++LG
Sbjct: 107 RALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLG 166
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N ++ +YA+ D A L D ++ S I A++G++ AR +FD M
Sbjct: 167 GDAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFDGM 226
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P + +WSAM++ Y + +A+E F+ MQ G PN +V L CA LGAL+QG
Sbjct: 227 PARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGA 286
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLA 297
W+HAY+D++ + ++ ++ TA++DMY KCG I A VFD+ +R + ++ S++ G A
Sbjct: 287 WVHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHA 346
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H Q A LF ++ G+ P+ SM+ +G+ PGV
Sbjct: 347 VHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGVVPGV 406
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVD L RAG L A+ V+ MP+ PD V GALL+ CR+HGD + V
Sbjct: 407 EHYGCLVDALARAGRLREAEGVIAAMPVAPDAAVWGALLSGCRLHGDAEAAARAAREAVR 466
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
G +VL ++ A + VR M + V KVPGCS+IEVDGVV EFVS
Sbjct: 467 CDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGVVHEFVS 523
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/489 (33%), Positives = 262/489 (53%), Gaps = 61/489 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S GD+ ++F + R WN MI G+ E +A L+K+M+R++
Sbjct: 156 ITGYASR---GDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVR 212
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVI-RLGWESYDFVLNGLLHLYATCNCMDPARK 144
P+ T +L ACA + + +G H V G+ S ++N + LY+ C
Sbjct: 213 PDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKC-------- 264
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
G + IA +F+ + K+ VSW+ +I GY ++L+KEA
Sbjct: 265 -----------------------GDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEA 301
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAII 262
L F M G PN ++ L ACA LGA+D GRWIH Y+D+ G+ L T++I
Sbjct: 302 LLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLI 361
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
DMYAKCG IE A VF+SM ++ + ++ ++I G A H ++ +A +LF RM+ G+ P++
Sbjct: 362 DMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDI 421
Query: 322 -----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
S+++ Y I P ++HYGC++DLLG AG+ + A++++
Sbjct: 422 TLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHM 481
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
MP+EPD + +LL AC++HG+++L + + L+E ++ G +VLLSNIYA+ +W V
Sbjct: 482 MPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDV 541
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
++R + ++KVPGCS IE+D VV EF+ G++ + EI +L +D L+ F
Sbjct: 542 ARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFV 601
Query: 479 DDGNEVATE 487
D +EV E
Sbjct: 602 PDTSEVLQE 610
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 213/436 (48%), Gaps = 65/436 (14%)
Query: 21 FAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM 79
+A+ K++ C S D L + +F Q IWNTM+RG A ++ + +Y +M
Sbjct: 15 YALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRM 74
Query: 80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
+ +PN YTF F+L++CA + G HAQV++LG E + L+ +YA +
Sbjct: 75 VSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRL 134
Query: 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
+ ARK+FD S RDV+S T+LI GYA G + AR++FD + E++ VSW+AMI GYV+
Sbjct: 135 EDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENC 194
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILG 258
++EALE F M RP+ +V L+ACA G+++ GR IH V D +G + +
Sbjct: 195 GYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIV 254
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A I +Y+KCG +E A +F+ + +DV ++ +LI G + + A+ LF M G
Sbjct: 255 NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 314
Query: 319 PNESMSEIYGIEPGVQHYGC---------------------------LVDLLGRAGMLEA 351
PN+ + + P H G L+D+ + G +EA
Sbjct: 315 PNDVT--MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEA 372
Query: 352 AKKV----------------------------------VREMPIEPDNYVLGALLNACRV 377
A +V +R+ IEPD+ L LL+AC
Sbjct: 373 AHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSH 432
Query: 378 HGDVDLGKETVESLVE 393
G +DLG+ +S+ +
Sbjct: 433 SGLLDLGRHIFKSVTQ 448
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 162/483 (33%), Positives = 264/483 (54%), Gaps = 62/483 (12%)
Query: 36 GDLSHGY-----RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90
G S+GY ++F + + WN +I G+AE +A L+K+M++++ P+ T
Sbjct: 178 GYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDEST 237
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+L ACA ++ + +G H+ + G+ S ++N L+ LY C
Sbjct: 238 MVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC-------------- 283
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
G++ A +F+ + K+ +SW+ +I GY ++L+KEAL F
Sbjct: 284 -----------------GEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQE 326
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIIDMYAKC 268
M G PN ++ L ACA LGA+D GRWIH Y+D+ G+ L T++IDMYAKC
Sbjct: 327 MLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKC 386
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G IE A VFDSM NR + ++ ++I G A H ++ A ++F RM+ +G+ P++
Sbjct: 387 GDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLL 446
Query: 322 -----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
SM+E Y I P ++HYGC++DLLG +G+ + A++++ M ++PD
Sbjct: 447 SACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPD 506
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ +LL AC++HG+V+LG+ ++L++ + G +VLLSNIYA+ +WN V K R
Sbjct: 507 GVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRAL 566
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ D ++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F D +EV
Sbjct: 567 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEV 626
Query: 485 ATE 487
E
Sbjct: 627 LQE 629
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/455 (30%), Positives = 230/455 (50%), Gaps = 64/455 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTM 59
++ ++ I + + +G +A+ K+I F S D L++ +F +Q IWNTM
Sbjct: 15 LQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTM 74
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG A ++P+ A LY M+ +PN+YTF F+L+ACA + G H V++LG
Sbjct: 75 FRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGC 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V L+ +Y + ARK+FD S +RDV+S+T+LI GYA +G I A++MFD+
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ VSW+A+I+GY + +KEALE F M +P+ + +V L+ACA +++ G
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H+++D +G ++ + A+ID+Y KCG +ETA +F+ + +DV ++ +LI G +
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHM 314
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC--------------------- 338
+ A+ LF M G PNE + I P H G
Sbjct: 315 NLYKEALLLFQEMLRSGESPNEVT--MLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNP 372
Query: 339 ------LVDLLGRAGMLEAAKKV----------------------------------VRE 358
L+D+ + G +EAA++V +R+
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRK 432
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
IEPD+ LL+AC G +DLG+ S+ E
Sbjct: 433 DGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTE 467
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 172/511 (33%), Positives = 258/511 (50%), Gaps = 70/511 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+++Q Q +T SG PF + KII F S S +G L + +F F+ NTMI
Sbjct: 125 VKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAMDNPFVCNTMI 184
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA--------DTSCLFVGLIC-- 110
R +A+ PIKA LY M R D +++T+ F L+ACA D C + + C
Sbjct: 185 RAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCTQLDIACKG 244
Query: 111 ---HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---------------- 151
H ++ RLG + F+ N L++LY+ C +D AR +FD
Sbjct: 245 AEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQI 304
Query: 152 ---------------RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV 196
++V+SW LI Y + G+I A+ +F +MPE++AVSW++MI GYV
Sbjct: 305 NDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYV 364
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
Q+ + AL F M++ ++ L ACA GAL+ GR IH + + +++
Sbjct: 365 QIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGY 424
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF--MRMQL 314
L A++DMYAKCG + A VF + + + + ++I LA H A+ LF M M +
Sbjct: 425 LSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSV 484
Query: 315 EGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
+G PN M Y I P ++HYGC+VDLL R G+L+
Sbjct: 485 DGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLK 544
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A +++ MP E ++ + LL ACRVH VDL +E+ + L + +G +VLLSNIYA
Sbjct: 545 EAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYA 604
Query: 411 STEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
++WN VE+VR M + V K PG S I +
Sbjct: 605 EAQRWNDVERVRSEMIGSGVPKKPGSSHIGI 635
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/465 (34%), Positives = 254/465 (54%), Gaps = 36/465 (7%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+++ +LF + +WN+M RG+A+ Y+++ F N ++ ++
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYAQSES-------YREIFCEMFERNVVAWTSMI-- 51
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
+ L L+ ++ L E + N ++ Y M ARKLF NRDV+ W
Sbjct: 52 --NGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFW 109
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGF 216
+++ GYA +G + +F++MPE+N SW+A+I GY LF E L F M
Sbjct: 110 NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDV 169
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
PN A +V L+ACA LGALD G+W+H Y + +G++ ++ +G A++DMYAKCG IE A S
Sbjct: 170 PPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAIS 229
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------------- 320
VF M +D+ ++ +LI GLA H + A A+ LF +M+ G P+
Sbjct: 230 VFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGL 289
Query: 321 --------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+SM++ Y I P ++HYGC+VD+L RAG LE A VR+MP+E D + LL
Sbjct: 290 VEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLL 349
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
ACR++ +V+L + ++ L+E + +V+LSNIY +W V +++ M D +K
Sbjct: 350 GACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKK 409
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+PGCSLIEV+ V EF S + + +EEI +L G+ K L+S +
Sbjct: 410 LPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGY 454
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 116/300 (38%), Gaps = 71/300 (23%)
Query: 16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK--------- 66
LW+ G I G GD+ +LF + R WNT+++G+A
Sbjct: 76 VLWNIMVSGYIEG-------GDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGL 128
Query: 67 ------------NEPIKAFA----------LYKQML-RSDFLPNNYTFSFILRACADTSC 103
N I +A +K+ML SD PN+ T +L ACA
Sbjct: 129 FEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGA 188
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L +G H G + +V N L+ +YA C ++ A +F +D+ISW +LI G
Sbjct: 189 LDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGG 248
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
A + + A +F +M KNA G +P+
Sbjct: 249 LAMHSRGADALNLFFQM--KNA-----------------------------GQKPDGITF 277
Query: 224 VGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+G L AC +G ++ G + + D I I ++DM A+ G +E A + MP
Sbjct: 278 IGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMP 337
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 259/468 (55%), Gaps = 57/468 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + Q+ + + G + F +GK+I FC+ SD GD+++ +F ++ F+WNTMI
Sbjct: 68 LKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFLWNTMI 127
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RGF + + AF YK+ML +N+TFSF+L+ + +G H +++LG +
Sbjct: 128 RGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLD 187
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S+ +V N L+H+Y + ++IAR +FD++
Sbjct: 188 SHVYVRNTLIHMYG-------------------------------RLKDVNIARNLFDEL 216
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+ + V+W+A+I+ +V ++ EAL+ F M G P+ A +V ++AC+ LGALD GR
Sbjct: 217 PKTDLVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGR 276
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H++V+ N I + ++IDMYAKCG +E A +F+++ +++ + ++I GLA H
Sbjct: 277 WVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHG 336
Query: 301 QSASAIELFMRMQLEGV-VPN------------------------ESMSEIYGIEPGVQH 335
+ A+ LF M E V P+ + M++ + I+P ++H
Sbjct: 337 DAEDALTLFSNMLAERVETPDGVTFLAVLCACNYGGKVEEGRRYFDLMTKHFNIQPTLKH 396
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YG +VD+LGRAG +E A ++++ MP+E + + LL AC++HG+V+LG+ ++E
Sbjct: 397 YGSMVDILGRAGFVEEAYQLIKSMPMECNAVIWRTLLAACQMHGNVELGERVSSHVLEIV 456
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV-PGCSLIEVD 442
DH +VLL+N+YAS+ QWN + K R+ M V K PG S +E++
Sbjct: 457 ADHSSDYVLLANMYASSGQWNEMIKTRKSMHRKGVEKPEPGNSYLEIN 504
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 111/249 (44%), Gaps = 42/249 (16%)
Query: 82 SDFLPN------NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT 135
+D +PN F F+ + C+ L HA +IRLG++ FV+ L+ A
Sbjct: 43 TDTIPNGGYFAKEQKFMFLFKQCSTLKDLNQ---LHASIIRLGFDQNLFVIGKLIDFCAV 99
Query: 136 CNC--MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
+ M+ A +FD N D W ++I G+ ++ ++ +A + + +M EK
Sbjct: 100 SDHGDMNYAVVVFDRIENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGI-------- 151
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
A ++F + L L LG++ G+ +H + + G++
Sbjct: 152 ----------AADNFTFSFL-------------LKMTGQLGSIMLGKQLHVNILKLGLDS 188
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ + +I MY + + A ++FD +P D+ A+ ++I + A++LF++M
Sbjct: 189 HVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFVQML 248
Query: 314 LEGVVPNES 322
GV P+E+
Sbjct: 249 QSGVEPDEA 257
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/503 (32%), Positives = 269/503 (53%), Gaps = 27/503 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q +QI +HL + + +++ S+ G L++ +F + R + WN+MI G
Sbjct: 497 QGRQIHAHLIRANITKNIIVETELVHM--YSECGRLNYAKEIFNRMAERNAYSWNSMIEG 554
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ + E +A L+KQM + P+ ++ S +L +C S G H ++R E
Sbjct: 555 YQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE 614
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ L+ +YA C MD A K++D ++ +DVI +++ + SG+ + A+ +FD+M +
Sbjct: 615 GILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQ 674
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+N W++++ GY L KE+ HF M + +V + C+ L AL+ G +
Sbjct: 675 RNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQL 734
Query: 243 HAYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H+ + + G + ++L TA++DMY+KCG I A +VFD+M +++ ++ ++ISG + H
Sbjct: 735 HSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGC 794
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
S A+ L+ M +G+ PNE SM E Y IE +HY
Sbjct: 795 SKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYT 854
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLLGRAG LE AK+ V +MPIEP+ GALL ACRVH D+D+G+ + L E
Sbjct: 855 CMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQ 914
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ G +V++SNIYA+ +W VE +R+ M+ V+K PG S IE++ + F +G +T+
Sbjct: 915 NPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPK 974
Query: 458 MEEIVLLLFGIDKHLKSLCFFDD 480
EEI L + K L + D
Sbjct: 975 TEEIYNNLRHLTLQSKGLGYIPD 997
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 220/514 (42%), Gaps = 100/514 (19%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++Q+QS + +G + F G ++ + G + ++ + WN +I
Sbjct: 191 MGGVRQLQSSVVKAGLNCNLFVGGALVD--GYARFGWMDDAVTSLDEIEGTSVVTWNAVI 248
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+ + +A+ ++ +ML+ P+N+TF+ LR C G H+++I G++
Sbjct: 249 AGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 308
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N L+ +YA C+ + K+FD R+ ++W S+I+ A+ G
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH----------- 357
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
F +AL F MQ G++ N + L A A L + +GR
Sbjct: 358 --------------------FNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGR 397
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H ++ RN + DIILG+A++DMY+KCG +E A VF S+ R+ +Y +L++G
Sbjct: 398 ELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEG 457
Query: 301 QSASAIELFMRMQLE-GVVPNE-----------------SMSEIYG------IEPGVQHY 336
++ A+EL+ MQ E G+ P++ +I+ I +
Sbjct: 458 KAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 517
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP----------------------------------IE 362
LV + G L AK++ M I+
Sbjct: 518 TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK 577
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV-HVLLSNIYASTEQWNGVEKV 421
PD + L ++L++C D G+E +V +++ EG+ V+L ++YA + KV
Sbjct: 578 PDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKV 637
Query: 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
D ++K +I + +V FV+ R N
Sbjct: 638 Y----DQTIKK----DVILNNVMVSAFVNSGRAN 663
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 163/392 (41%), Gaps = 56/392 (14%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASD-IGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
K I + + +G D + + KI+ + S + DL + +LF + R WNTMI +
Sbjct: 91 KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
A ++ ++ LY +M S + +TF +++AC + + V++ G
Sbjct: 151 ARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNL 210
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV L+ YA MD A D V++W ++I GY K
Sbjct: 211 FVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK----------------- 253
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+SW +EA F+ M G P++ AL C L + D G+ +H
Sbjct: 254 -ILSW-------------EEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVH 299
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+ + G + D +G A+IDMYAKC E+ VFD M R+ + S+IS A
Sbjct: 300 SKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFN 359
Query: 304 SAIELFMRMQLEGVVPNE-SMSEIYGIEPGVQHYG----------------------CLV 340
A+ LF+RMQ G N ++ I G+ G LV
Sbjct: 360 DALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALV 419
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
D+ + GM+E A +V R + +E + ALL
Sbjct: 420 DMYSKCGMVEEAHQVFRSL-LERNEVSYNALL 450
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 34/237 (14%)
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP---AR 143
N +S +++ C D++ G H Q+I G+ +++ +L LYA C+D AR
Sbjct: 70 NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
KLF+ R++ +W ++I YA+ VD + E
Sbjct: 130 KLFEEMPERNLTAWNTMILAYAR-------------------------------VDDYME 158
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
L + M+ G + + AC + + R + + V + G+ ++ +G A++D
Sbjct: 159 VLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVD 218
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
YA+ G ++ A + D + V + ++I+G A +F RM GV P+
Sbjct: 219 GYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPD 275
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/475 (34%), Positives = 257/475 (54%), Gaps = 42/475 (8%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--- 100
LF + F N ++R P+ F+ +++ N ++F+F+L + ++
Sbjct: 101 LFRRANSTSAFASNNLLRVLPHP-LPLTLFSRFRRR-------NPHSFTFLLASISNHLN 152
Query: 101 ------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRD 153
++C F+G HA ++ G FV N L+H Y + R++FD + RD
Sbjct: 153 AAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRD 212
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V++W ++ GY ++G +++AR++FD+MP ++ +SWS ++ GYV+ + + AL F M
Sbjct: 213 VLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE 272
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G RPN A +V AL+A A LG L+ G+++H V R+G+ + + +G A++DMYAKCGC+
Sbjct: 273 QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAV 332
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
A VFD M RDVFA+ ++I GLA H A+ELF R EG+ P
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSR 392
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ + E Y IEP ++HYGC+VDLLGRAG++ A +++ M I PD + G
Sbjct: 393 SGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWG 452
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+L++C+ HG VDLG L+E H G +VLLS IYA +W+ V +VR+ M
Sbjct: 453 TILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRG 512
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
K G SL+E G V +F+ G+ + +I L I+K L + D + V
Sbjct: 513 TNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSV 567
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 32/247 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ +F + R W+T++ G+ ++ E A +++ M+ PN L
Sbjct: 227 GMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTAL 286
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A L G H V R G V L+ +YA C C+ AR++FD RDV
Sbjct: 287 SAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVF 346
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++I G A G L ++A+E F G
Sbjct: 347 AWNAMICGLAAHG-------------------------------LGRDAVELFERFISEG 375
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P + VG L C+ G + +G R+ V++ IE ++ ++D+ + G + A
Sbjct: 376 LSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEA 435
Query: 275 CSVFDSM 281
+ + M
Sbjct: 436 IELIEGM 442
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/508 (33%), Positives = 260/508 (51%), Gaps = 58/508 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+ +QIQ H+ +G D ++ + G L +R+F + + WN MI
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSM--YAKCGSLKDAHRVFEKISKQNVVAWNAMI 486
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + + A A ++ +L+ PN+ TF+ IL C + L +G H +++ G E
Sbjct: 487 TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S V N L+ ++ C + A+ LF+ RD++SW ++I G+ + G
Sbjct: 547 SDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG------------ 594
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
KN V A ++F MQ G +P+ G L ACA AL +GR
Sbjct: 595 --KNQV-----------------AFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGR 635
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+HA + + D+++GT +I MY KCG IE A VF +P ++V+++TS+I+G A H
Sbjct: 636 RLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHG 695
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+ELF +MQ EGV P+ +SM E + IEP ++HY
Sbjct: 696 RGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHY 754
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDL GRAG+L A + + +M +EPD+ V GALL AC+VH +V+L ++ + +E
Sbjct: 755 GCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDP 814
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ GV V+LSNIYA+ W V K+R+ M D V K PG S IEVDG V F S ++T+
Sbjct: 815 NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHP 874
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EEI L + ++ L + D V
Sbjct: 875 QTEEIHAELERLHMEMRQLGYVPDTRYV 902
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 157/317 (49%), Gaps = 33/317 (10%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
++I +H+ SG D F +I + G+ ++F ++ + + WN ++ G+
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINM--YAKCGNTISAKQIFDDMREKDVYSWNLLLGGYV 187
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +AF L++QM++ P+ TF +L ACAD + G + +++ GW++ F
Sbjct: 188 QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLF 247
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V L++++ C + A K+FD RD+++WTS+I G A+ G+
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGR--------------- 292
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
FK+A F M+ G +P+ V L AC AL+QG+ +HA
Sbjct: 293 ----------------FKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ G + +I +GTAI+ MY KCG +E A VFD + R+V ++T++I+G A H +
Sbjct: 337 RMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDE 396
Query: 305 AIELFMRMQLEGVVPNE 321
A F +M G+ PN
Sbjct: 397 AFLFFNKMIESGIEPNR 413
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 160/364 (43%), Gaps = 46/364 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ ++F L R W +MI G A +A L+++M P+ F +L
Sbjct: 260 GDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLL 319
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
RAC L G HA++ +GW++ +V +L +Y C M+
Sbjct: 320 RACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED-------------- 365
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
A ++FD + +N VSW+AMI G+ Q EA FN M G
Sbjct: 366 -----------------ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN + L AC+ AL +G+ I ++ G D + TA++ MYAKCG ++ A
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335
VF+ + ++V A+ ++I+ H+Q +A+ F + EG+ PN S
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST------------ 516
Query: 336 YGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+ ++++ + LE K V + + +E D +V AL++ GD+ K +
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576
Query: 393 ERSL 396
+R L
Sbjct: 577 KRDL 580
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T+S +L+ C L G + + + G + F+ N L+++YA C A+++FD
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+DV SW L+ GY + G L++EA +
Sbjct: 172 REKDVYSWNLLLGGYVQHG-------------------------------LYEEAFKLHE 200
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M +P+ V L ACA +D+GR ++ + + G + D+ +GTA+I+M+ KCG
Sbjct: 201 QMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCG 260
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
I A VFD++P RD+ +TS+I+GLA H + A LF RM+ EGV P++
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 183 KNAVSWSAMINGYVQVDLFKEA---LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
K+ +A++N + F EA LE + + +R ++ + L C L G
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSAL---LQLCIKFKNLGDG 129
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
I+ ++ ++G++ DI + +I+MYAKCG +A +FD M +DV+++ L+ G H
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189
Query: 300 DQSASAIELFMRMQLEGVVPNE 321
A +L +M + V P++
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDK 211
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 252/466 (54%), Gaps = 56/466 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QIKQ+ + +T + L++ V + + L+ Y LF + + W+ MI G
Sbjct: 1097 QIKQLHALITTNSVLYNNLTVANKLLYVYVHHKC-LTDAYALFDEMPQKNPVSWSIMIGG 1155
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F + E ++ + +K+++R+ P+NYT F+++AC DT L +G + H V++ G
Sbjct: 1156 FVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLD 1215
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
FV L+ +YA C ++ A + +FD MP
Sbjct: 1216 HFVCAALVDMYAKCKVIEDA-------------------------------KLLFDVMPS 1244
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ V+W+ MI GY + KE+L F++++ GF P+ +V + ACA LGA+++ R++
Sbjct: 1245 KDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFV 1304
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H YV+RN LD+ILGTA+IDMYAKCG +++A +FD+M +++V +++++I+ H Q
Sbjct: 1305 HEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQG 1364
Query: 303 ASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGC 338
A+ELF M G++PN M E +G+ P ++H+ C
Sbjct: 1365 KKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTC 1424
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG L A + + M +E D + +LL ACR+H +DL ++ +SL+E +
Sbjct: 1425 MVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQN 1484
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
G ++LLSNIYA+ QW V K+R M +++K+PG + IE+ +
Sbjct: 1485 PGNYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIELKSI 1530
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/475 (34%), Positives = 257/475 (54%), Gaps = 42/475 (8%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--- 100
LF + F N ++R P+ F+ +++ N ++F+F+L + ++
Sbjct: 101 LFRRANSTSAFASNNLLRVLPHP-LPLTLFSRFRRR-------NPHSFTFLLASISNHLN 152
Query: 101 ------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRD 153
++C F+G HA ++ G FV N L+H Y + R++FD + RD
Sbjct: 153 AAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRD 212
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V++W ++ GY ++G +++AR++FD+MP ++ +SWS ++ GYV+ + + AL F M
Sbjct: 213 VLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE 272
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G RPN A +V AL+A A LG L+ G+++H V R+G+ + + +G A++DMYAKCGC+
Sbjct: 273 QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAV 332
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
A VFD M RDVFA+ ++I GLA H A+ELF R EG+ P
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSR 392
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ + E Y IEP ++HYGC+VDLLGRAG++ A +++ M I PD + G
Sbjct: 393 SGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWG 452
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+L++C+ HG VDLG L+E H G +VLLS IYA +W+ V +VR+ M
Sbjct: 453 TILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRG 512
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
K G SL+E G V +F+ G+ + +I L I+K L + D + V
Sbjct: 513 TNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSV 567
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 32/247 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ +F + R W+T++ G+ ++ E A +++ M+ PN L
Sbjct: 227 GMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTAL 286
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A L G H V R G V L+ +YA C C+ AR++FD RDV
Sbjct: 287 SAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVF 346
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++I G A G L ++A+E F G
Sbjct: 347 AWNAMICGLAAHG-------------------------------LGRDAVELFERFISEG 375
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P + VG L C+ G + +G R+ V++ IE ++ ++D+ + G + A
Sbjct: 376 LSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEA 435
Query: 275 CSVFDSM 281
+ + M
Sbjct: 436 IELIEGM 442
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/475 (34%), Positives = 257/475 (54%), Gaps = 42/475 (8%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--- 100
LF + F N ++R P+ F+ +++ N ++F+F+L + ++
Sbjct: 101 LFRRANSTSAFASNNLLRVLPHP-LPLTLFSRFRRR-------NPHSFTFLLASISNHLN 152
Query: 101 ------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRD 153
++C F+G HA ++ G FV N L+H Y + R++FD + RD
Sbjct: 153 AAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRD 212
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V++W ++ GY ++G +++AR++FD+MP ++ +SWS ++ GYV+ + + AL F M
Sbjct: 213 VLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE 272
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G RPN A +V AL+A A LG L+ G+++H V R+G+ + + +G A++DMYAKCGC+
Sbjct: 273 QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAV 332
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
A VFD M RDVFA+ ++I GLA H A+ELF R EG+ P
Sbjct: 333 AREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSR 392
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ + E Y IEP ++HYGC+VDLLGRAG++ A +++ M I PD + G
Sbjct: 393 SGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWG 452
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+L++C+ HG VDLG L+E H G +VLLS IYA +W+ V +VR+ M
Sbjct: 453 TILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRG 512
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
K G SL+E G V +F+ G+ + +I L I+K L + D + V
Sbjct: 513 TNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSV 567
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 32/247 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ +F + R W+T++ G+ ++ E A +++ M+ PN L
Sbjct: 227 GMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTAL 286
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A L G H V R G V L+ +YA C C+ AR++FD RDV
Sbjct: 287 SAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVF 346
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++I G A G L ++A+E F G
Sbjct: 347 AWNAMICGLAAHG-------------------------------LGRDAVELFERFISEG 375
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P + VG L C+ G + +G R+ V++ IE ++ ++D+ + G + A
Sbjct: 376 LSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEA 435
Query: 275 CSVFDSM 281
+ + M
Sbjct: 436 IELIEGM 442
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/508 (33%), Positives = 260/508 (51%), Gaps = 58/508 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+ +QIQ H+ +G D ++ + G L +R+F + + WN MI
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVRTALLSM--YAKCGSLKDAHRVFEKISKQNVVAWNAMI 486
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + + A A ++ +L+ PN+ TF+ IL C + L +G H +++ G E
Sbjct: 487 TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S V N L+ ++ C + A+ LF+ RD++SW ++I G+ + G
Sbjct: 547 SDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG------------ 594
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
KN V A ++F MQ G +P+ G L ACA AL +GR
Sbjct: 595 --KNQV-----------------AFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGR 635
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+HA + + D+++GT +I MY KCG IE A VF +P ++V+++TS+I+G A H
Sbjct: 636 RLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHG 695
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+ELF +MQ EGV P+ +SM E + IEP ++HY
Sbjct: 696 RGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHY 754
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDL GRAG+L A + + +M +EPD+ V GALL AC+VH +V+L ++ + +E
Sbjct: 755 GCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDP 814
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ GV V+LSNIYA+ W V K+R+ M D V K PG S IEVDG V F S ++T+
Sbjct: 815 NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHP 874
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EEI L + ++ L + D V
Sbjct: 875 QTEEIHAELERLHMEMRQLGYVPDTRYV 902
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 157/317 (49%), Gaps = 33/317 (10%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
++I +H+ SG D F +I + G+ ++F ++ + + WN ++ G+
Sbjct: 130 ERIYNHIKKSGVQPDIFMRNTLINM--YAKCGNTISAKQIFDDMREKDVYSWNLLLGGYV 187
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +AF L++QM++ P+ TF +L ACAD + G + +++ GW++ F
Sbjct: 188 QHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLF 247
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V L++++ C + A K+FD RD+++WTS+I G A+ G+
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGR--------------- 292
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
FK+A F M+ G +P+ V L AC AL+QG+ +HA
Sbjct: 293 ----------------FKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ G + +I +GTAI+ MY KCG +E A VFD + R+V ++T++I+G A H +
Sbjct: 337 RMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDE 396
Query: 305 AIELFMRMQLEGVVPNE 321
A F +M G+ PN
Sbjct: 397 AFLFFNKMIESGIEPNR 413
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 160/364 (43%), Gaps = 46/364 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ ++F L R W +MI G A +A L+++M P+ F +L
Sbjct: 260 GDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLL 319
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
RAC L G HA++ +GW++ +V +L +Y C M+
Sbjct: 320 RACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED-------------- 365
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
A ++FD + +N VSW+AMI G+ Q EA FN M G
Sbjct: 366 -----------------ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN + L AC+ AL +G+ I ++ G D + TA++ MYAKCG ++ A
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335
VF+ + ++V A+ ++I+ H+Q +A+ F + EG+ PN S
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST------------ 516
Query: 336 YGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+ ++++ + LE K V + + +E D +V AL++ GD+ K +
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP 576
Query: 393 ERSL 396
+R L
Sbjct: 577 KRDL 580
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T+S +L+ C L G + + + G + F+ N L+++YA C A+++FD
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+DV SW L+ GY + G L++EA +
Sbjct: 172 REKDVYSWNLLLGGYVQHG-------------------------------LYEEAFKLHE 200
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M +P+ V L ACA +D+GR ++ + + G + D+ +GTA+I+M+ KCG
Sbjct: 201 QMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCG 260
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
I A VFD++P RD+ +TS+I+GLA H + A LF RM+ EGV P++
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 183 KNAVSWSAMINGYVQVDLFKEA---LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
K+ +A++N + F EA LE + + +R ++ + L C L G
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSAL---LQLCIKFKNLGDG 129
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
I+ ++ ++G++ DI + +I+MYAKCG +A +FD M +DV+++ L+ G H
Sbjct: 130 ERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189
Query: 300 DQSASAIELFMRMQLEGVVPNE 321
A +L +M + V P++
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDK 211
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 245/468 (52%), Gaps = 42/468 (8%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+Q+ +H+T G L D F +I +A G+L + +F + + WN++I G++
Sbjct: 572 EQMHNHITKLGLLSDIFVSNSLIHLYAAC--GNLCYARSVFDEMVVKDVVSWNSLICGYS 629
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC--------ADTSCLFVGLICHAQVIR 116
+ N AL+K M + T ++ AC AD ++ C +
Sbjct: 630 QCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVY 689
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG N L+ + + A K+F R++++ ++I YAK I AR++
Sbjct: 690 LG--------NTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKI 741
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD++P+K+ +SWS+MI+GY Q + F +ALE F MQ +P+ I +++CA LGAL
Sbjct: 742 FDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGAL 801
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D G+W+H YV RN I+ D I+ ++IDMY KCG + A VF M +D ++ S+I GL
Sbjct: 802 DLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGL 861
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
AN+ ++ LF M EG PN ESM +Y +EP
Sbjct: 862 ANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQ 921
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLLGRAG LE A + + EMPI+PD V LL +C HGDV + + + L
Sbjct: 922 MKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLN 981
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
E + G + LLSN YAS +W+ VR+ M D +VRK PGCS +E
Sbjct: 982 ELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 213/398 (53%), Gaps = 26/398 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W+ +++ ++ P A L++ R + Y F+F L+ACA +
Sbjct: 53 RRPTPWHALLKAYSHGPHPQDALQLFRHA-RWHAADDTYAFTFALKACAGLGWPRCCMQL 111
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H V+R G+E +V L+++Y C C+ +R F+ ++ +SW +I G+A G++
Sbjct: 112 HGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEV 171
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
AR +F++MP +N VSWS MI+GY + EA+ F M G P+ ++ + A
Sbjct: 172 EYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPAL 231
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAY 289
+ +G + G +H Y ++ G+ D+ +G ++ID+YAK G I+ + VFD M R++ ++
Sbjct: 232 SNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSW 291
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
TS+ISG A H S A+ELF M+ G+ PN +SM
Sbjct: 292 TSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIY 351
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y I P V+H+GC++D+LGRAG L A++++R+ P+E + V LL C +G+V++G+
Sbjct: 352 EYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGE 411
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
T++ ++ + G V+LSN+ +++ E VR+
Sbjct: 412 RTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRK 449
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 189/388 (48%), Gaps = 51/388 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ IK++ ++ VSG +A+ K++ A DL +++F ++ TTF+WN +I
Sbjct: 466 MEAIKRLHAYYIVSGLYNCHYAMSKVLR-SYAILQPDLVFAHKVFDQIEAPTTFLWNILI 524
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG A+ + P A A YK+ +P+N TF FIL+ACA + L G H + +LG
Sbjct: 525 RGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLL 584
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV N L+HLYA C + AR +FD V +DV+SW SLI GY+
Sbjct: 585 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYS--------------- 629
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
Q + FK+ L F MQ G + + ++ ++AC LG
Sbjct: 630 ----------------QCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMAD 673
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
++ Y++ IE+D+ LG ++D + + G +++A VF +M R++ ++I+ A
Sbjct: 674 YMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQ 733
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM- 359
SA ++F ++ + ++ SM Y +A A ++ R+M
Sbjct: 734 DIVSARKIFDQIPKKDLISWSSMISGY----------------SQANHFSDALEIFRQMQ 777
Query: 360 --PIEPDNYVLGALLNACRVHGDVDLGK 385
++PD V+ +++++C G +DLGK
Sbjct: 778 RAKVKPDAIVIASVVSSCAHLGALDLGK 805
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 24/247 (9%)
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
A ++FD++ W+ +I G Q D +A+ + Q G P++ L ACA
Sbjct: 505 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 564
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+ AL++G +H ++ + G+ DI + ++I +YA CG + A SVFD M +DV ++ SL
Sbjct: 565 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 624
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE----------------SMS-------EIYGI 329
I G + ++ + LF MQ EGV ++ SM+ E Y I
Sbjct: 625 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCI 684
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
E V LVD GR G L++A+KV M + + + A++ A D+ ++ +
Sbjct: 685 EVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVR-NIVTMNAMIAAYAKGQDIVSARKIFD 743
Query: 390 SLVERSL 396
+ ++ L
Sbjct: 744 QIPKKDL 750
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 33/249 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ + LF + R W+ MI G+ P++A AL+++M+ P+ T ++
Sbjct: 169 GEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVV 228
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDV 154
A ++ + +G H + G V N L+ LYA + + ++FD M R++
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SWTS+I+G+A G L +A+E F M+
Sbjct: 289 VSWTSIISGFAMHG-------------------------------LSVKAVELFADMRRA 317
Query: 215 GFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G RPN + L AC+ G ++QG + + + I D+ IIDM + G +
Sbjct: 318 GIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLRE 377
Query: 274 ACSVFDSMP 282
A + P
Sbjct: 378 AEQIIRDFP 386
>gi|41469497|gb|AAS07282.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 476
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 242/477 (50%), Gaps = 28/477 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++Q+ + L SG DP A + + FC A D D ++ RL F+WNT I
Sbjct: 1 MAHLRQLHAALVKSGLARDPIAASRAVAFC-AGDGRDAAYAARLVRHHPRPNAFMWNTAI 59
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A+ P A AL+ ML S P TF + A A G H V++LG
Sbjct: 60 RALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLG 119
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N ++ +YA+ D A L D ++ S I A++G++ AR +FD M
Sbjct: 120 GDAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFDGM 179
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P + +WSAM++ Y + +A+E F+ MQ G PN +V L CA LGAL+QG
Sbjct: 180 PARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGA 239
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLA 297
W+HAY+D++ + ++ ++ TA++DMY KCG I A VFD+ +R + ++ S++ G A
Sbjct: 240 WVHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHA 299
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H Q A LF ++ G+ P+ SM+ +G+ PGV
Sbjct: 300 VHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGVVPGV 359
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVD L RAG L A+ + MP+ PD V GALL+ CR+HGD + V
Sbjct: 360 EHYGCLVDALARAGRLREAEGAIAAMPVAPDAAVWGALLSGCRLHGDAEAAARAAREAVR 419
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
G +VL ++ A + VR M + V KVPGCS+IEVDGVV EFVS
Sbjct: 420 CDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGVVHEFVS 476
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 263/488 (53%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G++ ++F + + WN MI G+AE +A L+ +M++ D
Sbjct: 151 ITGYASR---GNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T + +L C + + +G H+ + G+ S ++N L+ LY+ C
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKC--------- 258
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F+ + K+ +SW+ +I GY ++ KEAL
Sbjct: 259 ----------------------GEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEAL 296
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN--GIELDIILGTAIID 263
F M G PN ++ L ACA LGA+D GRWIH Y+D+ GI + L T++ID
Sbjct: 297 LVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLID 356
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VFD++ N+ + + ++I G A H ++ +A +L RM+ +G+ P++
Sbjct: 357 MYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDIT 416
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM+ Y IEP ++HYGC++DLLGR+G+ + A++++ M
Sbjct: 417 FVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSM 476
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + G+LL AC++H +++LG+ + L++ + G +VLLSNIYA++ +W+ V
Sbjct: 477 TMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVA 536
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
+VR + D ++KVPGCS IE+D +V EF+ G++ + +EI +L ID L F
Sbjct: 537 RVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVS 596
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 597 DTSEVLQE 604
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 170/499 (34%), Positives = 264/499 (52%), Gaps = 33/499 (6%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI + ++ S L D + ++ S G ++ R F + R WN++I + +
Sbjct: 172 QIHALISKSRYLLDVYMGSALVDM--YSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQ 229
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
KA ++ M+ + P+ T + ++ ACA S + GL HA+V++ D V
Sbjct: 230 NGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLV 289
Query: 126 L-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L N L+ +YA C ++ AR +FD R+V+S TS++ GYA++ + AR MF M EKN
Sbjct: 290 LGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKN 349
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+A+I GY Q +EA+ F ++ P H L ACA L L GR H
Sbjct: 350 VVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHT 409
Query: 245 YVDRNGI------ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+ ++G E DI +G ++IDMY KCG +E C VF+ M RDV ++ ++I G A
Sbjct: 410 QILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQ 469
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
+ +A+E+F +M + G P+ SM G+ P
Sbjct: 470 NGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKD 529
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
H+ C+VDLLGRAG L+ A +++ MP++PDN V G+LL AC+VHG+++LGK E L+E
Sbjct: 530 HFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEI 589
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +VLLSN+YA +W V +VR+ M V K PGCS IE+ V F+ ++
Sbjct: 590 DPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKR 649
Query: 455 NVLMEEIVLLLFGIDKHLK 473
+ L ++I L+L + + +K
Sbjct: 650 HPLKKDIHLVLKFLTEQMK 668
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 128/231 (55%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
F+ +L +C + HA++I+ + S F+ N L+ Y C + ARK+FD
Sbjct: 22 FAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMP 81
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R+ S+ ++++ K G++ A +F MPE + SW+AM++G+ Q D F+EAL F
Sbjct: 82 QRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVD 141
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M F N AL+ACA L L+ G IHA + ++ LD+ +G+A++DMY+KCG
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGV 201
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+ A FD M R++ ++ SLI+ + + A+E+F+ M GV P+E
Sbjct: 202 VACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDE 252
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 160/359 (44%), Gaps = 51/359 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ G L + +F + WN M+ GFA+ + +A + M DF+ N Y+F
Sbjct: 96 TKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFG 155
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L ACA + L +G+ HA + + + ++ + L+ +Y+ C + A++ FD R
Sbjct: 156 SALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVR 215
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+++SW SLI Y ++G +ALE F M
Sbjct: 216 NIVSWNSLITCYEQNGPAG-------------------------------KALEVFVMMM 244
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHA-YVDRNGIELDIILGTAIIDMYAKCGCI 271
G P+ + ++ACA A+ +G IHA V R+ D++LG A++DMYAKC +
Sbjct: 245 DNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRV 304
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
A VFD MP R+V + TS++ G A +A +F M +E
Sbjct: 305 NEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNM----------------MEK 348
Query: 332 GVQHYGCLVDLLGRAGMLEAAKK---VVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
V + L+ + G E A + +++ I P +Y G LLNAC D+ LG++
Sbjct: 349 NVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQA 407
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 260/476 (54%), Gaps = 60/476 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL LF + +R +W +MI G+ + + P +A LYK+M F P+ T + ++
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLV 187
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L VG+ H+ + + DM + +
Sbjct: 188 SACAELKDLGVGMKLHSHI-----------------------------REMDMKIC--AV 216
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
++L+N YAK G + ARQ+FD++ +K+ +WSA+I GYV+ + EAL+ F ++ G
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR--EVAG 274
Query: 216 ---FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
RPN I+ ++ACA LG L+ GRW+H Y+ R + L ++IDM++KCG I+
Sbjct: 275 GSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDID 334
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
A +FDSM +D+ ++ S+++GLA H A+ F MQ + P+E
Sbjct: 335 AAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACS 394
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
+ +YG+ +HYGC+VDLL RAG+L A++ +R MP++PD +
Sbjct: 395 HAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIW 454
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G++L ACRV+ +++LG+E L+E ++GV++LLSNIYA + WN V+KVR M +
Sbjct: 455 GSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEK 514
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++K PGCS + +D + F++G+ ++ + EI ++L + + LK + + D +EV
Sbjct: 515 GIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEV 570
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 116/245 (47%), Gaps = 20/245 (8%)
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-Q 212
V+S SL GYA S +F + ++W++M+ +V ++ + AL+ + M +
Sbjct: 20 VLSMGSLGVGYAYS--------VFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
P+ L CA L G+ +H V + + D+ + T +++MYA CG ++
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYGIEP 331
+A +F+ M +R+ +TS+ISG + A+ L+ +M+ +G P+E +M+ +
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++ G + L +REM ++ + AL+N GD+ ++ + L
Sbjct: 192 ELKDLGVGMKLHSH----------IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQL 241
Query: 392 VERSL 396
++ +
Sbjct: 242 SDKDV 246
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GD+ R+F + Y+ WN+M+ G A +A A + M +D P+ TF
Sbjct: 328 SKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFI 387
Query: 93 FILRACA 99
+L AC+
Sbjct: 388 GVLTACS 394
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 254/487 (52%), Gaps = 31/487 (6%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
++G+ D+G +F + + +WN MI G+ ++AF L+++M+
Sbjct: 235 VVGYVRRGDVGA---ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVP 291
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW----ESYDFVLNGLLHLYATCNCMDP 141
+ +TF+ +L ACA+ G H Q+IRL E+ V N L+ Y+ C +
Sbjct: 292 LDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAV 351
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
AR++FD +DV+SW ++++GY +S + A ++F++MP KN +SW M++GYV
Sbjct: 352 ARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFA 411
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
++AL+ FN M+ +P GA+ AC LGAL G+ +H ++ + G E G A+
Sbjct: 412 EDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNAL 471
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
I MYA+CG ++ A +F MPN D ++ ++IS L H A+ELF RM EG+ P+
Sbjct: 472 ITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR 531
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
ESM +GI PG HY L+DLLGRAG + A+ +++
Sbjct: 532 ISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIK 591
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP EP + A+L+ CR GD++LG + L + + H+G ++LLSN Y++ W
Sbjct: 592 TMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVD 651
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+VR+ M D V+K PGCS IE V F+ G+ + E+ L + ++ L +
Sbjct: 652 AARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGY 711
Query: 478 FDDGNEV 484
D V
Sbjct: 712 VPDTKVV 718
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 178/387 (45%), Gaps = 29/387 (7%)
Query: 20 PFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM 79
P + ++ +A+D + + V R T + N +I +A + A A+++ +
Sbjct: 88 PVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL 147
Query: 80 LRSDFL-PNNYTFSFILRACADTSCLFVGLIC--HAQVIRLGWESYDFVLNGLLHLYATC 136
L S L P++Y+F+ +L A + V H V++ G V N L+ LY C
Sbjct: 148 LASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKC 207
Query: 137 NCMDP---ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
+ ARK+ D N+D ++WT+++ GY + G + AR +F+++ K V W+AMI+
Sbjct: 208 ESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMIS 267
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR---NG 250
GYV + EA E F M L + L+ACA +G G+ +H + R N
Sbjct: 268 GYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNF 327
Query: 251 I-ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
+ E + + A++ Y+KCG I A +FD+M +DV ++ +++SG A+E+F
Sbjct: 328 VPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVF 387
Query: 310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNY 366
M + NE + +V G E A K+ +M ++P +Y
Sbjct: 388 EEMPYK----NE------------LSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDY 431
Query: 367 VLGALLNACRVHGDVDLGKETVESLVE 393
+ AC G + GK+ +V+
Sbjct: 432 TYAGAIAACGELGALKHGKQLHGHIVQ 458
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 25/256 (9%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAV 186
L+HLY + A LF + +S TSL+ YA + ++ A FD +P ++ V
Sbjct: 65 LIHLYTLSRDLPAAATLF--CADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTV 122
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLG--ALDQGRWIH 243
+A+I+ Y + A+ F + G RP+ L+A L ++ +H
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLH 182
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIET---ACSVFDSMPNRDVFAYTSLISGLANHD 300
V ++G + + A++ +Y KC E A V D MPN+D +T+++ G
Sbjct: 183 CSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRG 242
Query: 301 QSASAIELFMRMQLE-GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+A +F + + VV N +S G H G V+ E +++V E
Sbjct: 243 DVGAARSVFEEVDGKFDVVWNAMIS-------GYVHSGMAVE------AFELFRRMVLER 289
Query: 360 PIEPDNYVLGALLNAC 375
+ D + ++L+AC
Sbjct: 290 -VPLDEFTFTSVLSAC 304
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 254/472 (53%), Gaps = 28/472 (5%)
Query: 15 GTLWDPF-AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
G + DPF G I + S I D LF + + WN +I G+ + A
Sbjct: 151 GFVDDPFIQTGLIAMYASCRRIMD---ARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDAL 207
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
L++ M SD P++ +L AC L G H V G+ + L+++Y
Sbjct: 208 RLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMY 267
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
A C MD ARK++D ++ +I T++++GYAK G + AR +FD+M E++ V WSAMI+
Sbjct: 268 ANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMIS 327
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
GY + D +EAL+ F+ M P+ ++ ++AC+ +GAL Q WIH YVDR+G
Sbjct: 328 GYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGR 387
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ + A+IDMYAKCG + A VF++MP ++V +++S+I+ A H + SAI+LF RM+
Sbjct: 388 ALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMK 447
Query: 314 LEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
+ PN SM +GI P +HYGC+VDL RA L
Sbjct: 448 EVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFL 507
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409
A +++ MP P+ + G+L++AC+VHG+ +LG+ + L+E DH+G V+LSNIY
Sbjct: 508 RKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIY 567
Query: 410 ASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
A ++WN V +R+ M + K S IE++ V F+ +R + +EI
Sbjct: 568 AKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEI 619
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 168/404 (41%), Gaps = 87/404 (21%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADTSCLFVGLICH 111
T N ++R + + P K LY + + F + ++F +L+A + S GL H
Sbjct: 85 THFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIH 144
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
+LG+ F+ GL+ +YA+C + AR LFD + D ++W +I+GY ++G
Sbjct: 145 GLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGH-- 202
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+ +AL F M+ +P+ + L+AC
Sbjct: 203 -----------------------------YDDALRLFEDMRSSDMKPDSVILCTVLSACG 233
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS--------------- 276
G L GR IH +V NG +D L TA+I+MYA CG ++ A
Sbjct: 234 HAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTA 293
Query: 277 ----------------VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+FD M RD+ ++++ISG A DQ A++LF M + VP+
Sbjct: 294 MLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPD 353
Query: 321 E--------------SMSEIYGIEPGVQHYG---------CLVDLLGRAGMLEAAKKVVR 357
+ ++++ I V G L+D+ + G L A++V
Sbjct: 354 QITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFE 413
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
MP + +++NA +HG+ D + + E +++ GV
Sbjct: 414 NMP-RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGV 456
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 248/463 (53%), Gaps = 26/463 (5%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILR 96
L +LF + R W T+I G+A P +A+ ++ +M+ ++ + PN T
Sbjct: 182 LPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAAS 241
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
A L +G H ++ G + N L+ ++ C C+ A+++FD +DV S
Sbjct: 242 AAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYS 301
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
WTS+++ YAK G + A ++F ++P +N VSWS M+ Y ++ EA+ FN M G
Sbjct: 302 WTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGV 361
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIH-AYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P A +V L+ACA L +LD G W++ Y+ + +EL L A IDM+AKCG + A
Sbjct: 362 EPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAAS 421
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------------- 322
+F +M +++V ++ ++I H Q A+ LF + G++P+E+
Sbjct: 422 RLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGG 481
Query: 323 -----------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M +YGIEP +HY C++DLLG+ G+L+ A +V R MP+ D GAL
Sbjct: 482 LVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGAL 541
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
LNACR+HG+V++GK + L G++VL+S IYAS +W V+ +R M D V+
Sbjct: 542 LNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVK 601
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
K PGCS IEVDG EF+ + ++V E+I L I H K+
Sbjct: 602 KNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNIYLHSKA 644
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 180/378 (47%), Gaps = 53/378 (14%)
Query: 12 TVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFV-CLQYRTTFIWNTMIRGFAEKNEPI 70
TVSG + F +++ FC+ SD L+H + C + ++ TM+RGF +P
Sbjct: 55 TVSGLASNRFPASRLLAFCALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPT 114
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGL 129
A L++++LR + T F ++A A +S + C A + G+ + N L
Sbjct: 115 HALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVA--FKRGFIGQSVLAGNAL 172
Query: 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS 189
+H+Y + + ARKLFD +RDV+SWT+LI+GYA+ G A ++F +M +V W
Sbjct: 173 VHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-W- 230
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
PN +V A +A +G L GR +H + +
Sbjct: 231 ----------------------------PNEVTLVAAASAAGQMGLLGLGRTVHQCIVES 262
Query: 250 GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
G + + L A++DM+ KCGC+ A VFD MP +DV+++TS++S A +A +LF
Sbjct: 263 GGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLF 322
Query: 310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNY 366
+PN + V + C+V A M + A ++ +M +EP +
Sbjct: 323 KE------IPNRN----------VVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Query: 367 VLGALLNACRVHGDVDLG 384
L ++L+AC +D+G
Sbjct: 367 TLVSVLSACAQLCSLDVG 384
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 40/316 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ +F + + + W +M+ +A+ + A L+K+ +PN S+
Sbjct: 282 GCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKE------IPNRNVVSW-- 333
Query: 96 RACADTSCLFVGLICHA----QVIRL-------GWESYDFVLNGLLHLYATCNCMDPARK 144
SC+ V HA + IR+ G E D L +L A +D
Sbjct: 334 ------SCM-VAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTW 386
Query: 145 LFDMSVNRDVISWT-----SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
L+D + + T + I+ +AK G + A ++F M +KN VSW+ MI +
Sbjct: 387 LYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHG 446
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD-RNGIELDIILG 258
+EAL F + G P+ A +G L+AC+ G + +GR + GIE
Sbjct: 447 QPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHY 506
Query: 259 TAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+ID+ K G ++ A V SMP D + +L++ H I +L G+
Sbjct: 507 ACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGN--VEIGKCAADKLAGL 564
Query: 318 VPNES-----MSEIYG 328
P++S MS+IY
Sbjct: 565 DPSDSGIYVLMSQIYA 580
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 28/238 (11%)
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
NA + M+ G+++ AL F + + IV A+ A A + + IH
Sbjct: 96 NAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA--IH 153
Query: 244 AYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
+ G I ++ G A++ MY + A +FD M +RDV ++T+LI G A
Sbjct: 154 CVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLP 213
Query: 303 ASAIELFMRMQL-EGVVPNE----SMSEIYG---------------IEPG----VQHYGC 338
A +F RM + E V PNE + + G +E G V
Sbjct: 214 DEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENA 273
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
LVD+ G+ G + AAK+V MPI+ D Y ++++A GD++ + + + R++
Sbjct: 274 LVDMFGKCGCVAAAKEVFDGMPIK-DVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV 330
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 170/509 (33%), Positives = 267/509 (52%), Gaps = 60/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M I ++ + L +G P A+ +++ C+AS LS+ +F + + TF +NT+I
Sbjct: 1 MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A+ + K M + P+++TF F+L+ACA L GL H+ + +LG++
Sbjct: 61 RAHADSSPSFSLSLFSK-MAMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFD 116
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V NGL I+ Y G + A ++F++M
Sbjct: 117 SDVYVQNGL-------------------------------IHFYGCCGFLDFALKVFEEM 145
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
PE++ VSWS+MI + + EAL F MQL G +P+ ++ ++A + LG L+ G
Sbjct: 146 PERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG 205
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WI ++ RNG+E + LGTA++DM+++CGCIE + VFD M R+V +T+LI+GLA H
Sbjct: 206 KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVH 265
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
+SA A+ +F M+ G P+ ES+ YG+EP +H
Sbjct: 266 GRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEH 325
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG+L A K V MPI P++ + LL AC H ++L ++ E + E
Sbjct: 326 YGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELD 385
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H+G +VLLSN+Y +W VR M + + K PGCSLI V+ ++ EFV+G+ +
Sbjct: 386 SYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNH 445
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E I L + LK + + D + V
Sbjct: 446 PQFESIREFLVSMIDSLKVVGYTPDISNV 474
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 170/502 (33%), Positives = 255/502 (50%), Gaps = 68/502 (13%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+Q+ L G +PF +I SA G + Y++F + R W +MI G+
Sbjct: 219 EQVHCFLIKCGFRGNPFVGTTLIDMYSAG--GTVGDAYKIFCEMFERNVVAWTSMINGYI 276
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + A L+ D P D
Sbjct: 277 LSADLVSARRLF------DLAPER----------------------------------DV 296
Query: 125 VL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
VL N ++ Y M ARKLF NRDV+ W +++ GYA +G + +F++MPE+
Sbjct: 297 VLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPER 356
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
N SW+A+I GY LF E L F M PN A +V L+ACA LGALD G+W+
Sbjct: 357 NIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWV 416
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H Y + +G++ ++ +G A++DMYAKCG IE A SVF M +D+ ++ +LI GLA H +
Sbjct: 417 HVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRG 476
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A A+ LF +M+ G P+ +SM++ Y I P ++HYGC
Sbjct: 477 ADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGC 536
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VD+L RAG LE A VR+MP+E D + LL ACR++ +V+L + ++ L+E +
Sbjct: 537 MVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKN 596
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
+V+LSNIY +W V +++ M D +K+PGCSLIEV+ V EF S + + +
Sbjct: 597 PANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQI 656
Query: 459 EEIVLLLFGIDKHLKSLCFFDD 480
EEI +L G+ K L+S + D
Sbjct: 657 EEIYGVLRGLVKVLRSFGYVPD 678
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 172/382 (45%), Gaps = 65/382 (17%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+ QIQ+ + +G ++ + K++ C+ + +++ +LF + +WN+M R
Sbjct: 115 KQVHQIQAQIIANGFQYNEYITPKLVTICAT--LKRMTYARQLFDQIPDPNIALWNSMFR 172
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G+A+ + L+ QM D PN +TF +L++C + L G H +I+ G+
Sbjct: 173 GYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRG 232
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV L+ +Y+ + A K+F R+V++WTS+INGY S + AR++FD P
Sbjct: 233 NPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAP 292
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E++ V W+ M++GY++ EA + F M PN
Sbjct: 293 ERDVVLWNIMVSGYIEGGDMVEARKLFXEM------PNR--------------------- 325
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
D++ ++ YA G +E +F+ MP R++F++ +LI G A++
Sbjct: 326 ------------DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 373
Query: 302 SASAIELFMRMQLEG-VVPNESM-----------------------SEIYGIEPGVQHYG 337
+ F RM E V PN++ +E G++ V
Sbjct: 374 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGN 433
Query: 338 CLVDLLGRAGMLEAAKKVVREM 359
L+D+ + G++E A V R M
Sbjct: 434 ALMDMYAKCGIIENAISVFRGM 455
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+++ ARQ+FD++P+ N W++M GY Q + ++E + F M+ RPN L
Sbjct: 148 RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 207
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
+C + AL +G +H ++ + G + +GT +IDMY+ G + A +F M R+V A
Sbjct: 208 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 267
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+TS+I+G SA LF + P E V + +V G
Sbjct: 268 WTSMINGYILSADLVSARRLF------DLAP----------ERDVVLWNIMVSGYIEGGD 311
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+ A+K+ EMP D +L +G+V+ + E + ER++
Sbjct: 312 MVEARKLFXEMP-NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNI 358
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 248/463 (53%), Gaps = 26/463 (5%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILR 96
L +LF + R W T+I G+A P +A+ ++ +M+ ++ + PN T
Sbjct: 182 LPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAAS 241
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
A L +G H ++ G + N L+ ++ C C+ A+++FD +DV S
Sbjct: 242 AAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYS 301
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
WTS+++ YAK G + A ++F ++P +N VSWS M+ Y ++ EA+ FN M G
Sbjct: 302 WTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGV 361
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIH-AYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P A +V L+ACA L +LD G W++ Y+ + +EL L A IDM+AKCG + A
Sbjct: 362 EPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAAS 421
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------------- 322
+F +M +++V ++ ++I H Q A+ LF + G++P+E+
Sbjct: 422 RLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGG 481
Query: 323 -----------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M +YGIEP +HY C++DLLG+ G+L+ A +V R MP+ D GAL
Sbjct: 482 LVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGAL 541
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
LNACR+HG+V++GK + L G++VL+S IYAS +W V+ +R M D V+
Sbjct: 542 LNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVK 601
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
K PGCS IEVDG EF+ + ++V E+I L I H K+
Sbjct: 602 KNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNIYLHSKA 644
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 180/378 (47%), Gaps = 53/378 (14%)
Query: 12 TVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFV-CLQYRTTFIWNTMIRGFAEKNEPI 70
TVSG + F +++ FC+ SD L+H + C + ++ TM+RGF +P
Sbjct: 55 TVSGLASNRFPASRLLAFCALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPT 114
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGL 129
A L++++LR + T F ++A A +S + C A + G+ + N L
Sbjct: 115 HALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVA--FKRGFIGQSVLAGNAL 172
Query: 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS 189
+H+Y + + ARKLFD +RDV+SWT+LI+GYA+ G A ++F +M +V W
Sbjct: 173 VHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-W- 230
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
PN +V A +A +G L GR +H + +
Sbjct: 231 ----------------------------PNEVTLVAAASAAGQMGLLGLGRTVHQCIVES 262
Query: 250 GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
G + + L A++DM+ KCGC+ A VFD MP +DV+++TS++S A +A +LF
Sbjct: 263 GGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLF 322
Query: 310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNY 366
+PN + V + C+V A M + A ++ +M +EP +
Sbjct: 323 KE------IPNRN----------VVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Query: 367 VLGALLNACRVHGDVDLG 384
L ++L+AC +D+G
Sbjct: 367 TLVSVLSACAQLCSLDVG 384
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 40/316 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ +F + + + W +M+ +A+ + A L+K+ +PN S+
Sbjct: 282 GCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKE------IPNRNVVSW-- 333
Query: 96 RACADTSCLFVGLICHA----QVIRL-------GWESYDFVLNGLLHLYATCNCMDPARK 144
SC+ V HA + IR+ G E D L +L A +D
Sbjct: 334 ------SCM-VAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTW 386
Query: 145 LFDMSVNRDVISWT-----SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
L+D + + T + I+ +AK G + A ++F M +KN VSW+ MI +
Sbjct: 387 LYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHG 446
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD-RNGIELDIILG 258
+EAL F + G P+ A +G L+AC+ G + +GR + GIE
Sbjct: 447 QPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHY 506
Query: 259 TAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+ID+ K G ++ A V SMP D + +L++ H I +L G+
Sbjct: 507 ACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGN--VEIGKCAADKLAGL 564
Query: 318 VPNES-----MSEIYG 328
P++S MS+IY
Sbjct: 565 DPSDSGIYVLMSQIYA 580
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 28/238 (11%)
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
NA + M+ G+++ AL F + + IV A+ A A + + IH
Sbjct: 96 NAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA--IH 153
Query: 244 AYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
+ G I ++ G A++ MY + A +FD M +RDV ++T+LI G A
Sbjct: 154 CVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLP 213
Query: 303 ASAIELFMRMQL-EGVVPNE----SMSEIYG---------------IEPG----VQHYGC 338
A +F RM + E V PNE + + G +E G V
Sbjct: 214 DEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENA 273
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
LVD+ G+ G + AAK+V MPI+ D Y ++++A GD++ + + + R++
Sbjct: 274 LVDMFGKCGCVAAAKEVFDGMPIK-DVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV 330
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 176/458 (38%), Positives = 255/458 (55%), Gaps = 36/458 (7%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
TT + + +IR + P +F+L+ +LRS P+++TF F+ RA A S + H
Sbjct: 23 TTQLLDPLIRSASSSPSPSLSFSLFIHLLRSSLRPSHFTFPFLARAAARLSSASLAAALH 82
Query: 112 AQVIRLGWESYDF-VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
A +RLG D V N L+H+YA C D A ++FD +++SW +L++GYAK +
Sbjct: 83 AHPLRLGLLPADLHVANSLVHMYAACAMPDHAHRVFDEIPRPNLVSWNALLDGYAKCRDL 142
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC----------GFRPNH 220
ARQ+F +MP+++ VSWSAMI+G V+ +EAL F M+ G R N
Sbjct: 143 PAARQVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSVEDGGGGARAND 202
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V L ACA LG L++GRW+H + G L++ L T+++DMYAKCG I A +F +
Sbjct: 203 VTMVSVLGACANLGDLERGRWVHRCLRERGFPLNLKLATSLVDMYAKCGAIHEALEMFWA 262
Query: 281 MP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------------- 321
+P + DV + ++I GLA H + ++E+F MQ GV P+E
Sbjct: 263 VPVESTDVLIWNAVIGGLAVHGMATESVEIFQEMQCAGVAPDEITYLCLLSACVHGGLVD 322
Query: 322 ------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
E G+ P V+HY CLVD+LGRAG LE VV+ MP++P VLGA LNAC
Sbjct: 323 EAWKFFRSLEAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPSVSVLGAFLNAC 382
Query: 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
+HG V+LG+ LV+ DH+G ++ LSNIYA +W +K R+ MED V+KVPG
Sbjct: 383 HLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEDRGVKKVPG 442
Query: 436 CSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
S I V G + F + ++T+ EI LL I +K
Sbjct: 443 FSEIHVGGGLSRFTAQDKTHPGSVEIYDLLNLIAMEMK 480
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 43/260 (16%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS----------DFLP 86
DL ++F + R W+ MI G + E +A AL++ M +
Sbjct: 141 DLPAARQVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSVEDGGGGARA 200
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
N+ T +L ACA+ L G H + G F LN L
Sbjct: 201 NDVTMVSVLGACANLGDLERGRWVHRCLRERG-----FPLNLKLA--------------- 240
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEA 204
TSL++ YAK G I A +MF +P + + W+A+I G + E+
Sbjct: 241 -----------TSLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMATES 289
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
+E F MQ G P+ + L+AC G +D+ ++ G+ + ++D+
Sbjct: 290 VEIFQEMQCAGVAPDEITYLCLLSACVHGGLVDEAWKFFRSLEAQGLRPHVEHYACLVDV 349
Query: 265 YAKCGCIETACSVFDSMPNR 284
+ G +E V SMP +
Sbjct: 350 LGRAGRLEEVYGVVKSMPMK 369
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/505 (33%), Positives = 270/505 (53%), Gaps = 37/505 (7%)
Query: 4 IKQIQSH-LTVSGTLWDPFAVGKII-------GFCSASDIGDLSHGYRLFVCLQYRTTFI 55
I Q + H L V G VG++ + SA +GD R F + R
Sbjct: 124 IAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGD---SRRFFDEMVDRNVVS 180
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN+MI G+A+ + + +L+ +M R FL + +T +L AC+ L +G + H +++
Sbjct: 181 WNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRML 240
Query: 116 RLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
G D +L + L+ +Y C + AR+ F+M + V+SWTS++ K G ++ AR
Sbjct: 241 VSG-SRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAAR 299
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
FD MPE+N VSW+AMI+ YVQ EAL+ +N MQ G P+ +V L+A +G
Sbjct: 300 CWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIG 359
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L G+ +H Y+ N D+ L +++DMYAKCG ++TA S+F M NR+V ++ +I
Sbjct: 360 DLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIG 419
Query: 295 GLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIE 330
GLA H ++ I F M + P+ ESM +Y ++
Sbjct: 420 GLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVK 479
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
V+HY C+VDLLGR G LE A +++EMP++PD V GALL ACR+HG+V +G++ ++
Sbjct: 480 HEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQ 539
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
L+E G+ VL+SN+ T QW ++++R+ M++ RK G S IE++ + EF
Sbjct: 540 LLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGV 599
Query: 451 GERTNVLMEEIVLLLFGIDKHLKSL 475
+ + EI ++ + HL SL
Sbjct: 600 EDIRHERSSEIYAVVDQLSYHLISL 624
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 181/387 (46%), Gaps = 47/387 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD--LSHGYRLFVCLQYRTTFIWNT 58
++++ Q+ +HL V G+L + + +C+ + G L H RLF + ++NT
Sbjct: 24 IQRLNQLHAHLLVHGSLSAASDL-LLASYCALAKAGHGVLCHARRLFDGIPGPDRVMYNT 82
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IR + + P +A L++ MLR LPN +T F+++AC L H +RLG
Sbjct: 83 IIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLG 142
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
FV N LLH YA+ + +R+ FD V+R+V+SW S+I GYA++G
Sbjct: 143 LVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDT-------- 194
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+E F M+ GF + +V L AC+ G L+
Sbjct: 195 -----------------------REVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEI 231
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GR +H + +G +D+IL +A++DMY KCG + A F+ MP + V ++TS++
Sbjct: 232 GRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTK 291
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
H +A F M +V +M Y ++ G H +DL + ++
Sbjct: 292 HGSVNAARCWFDHMPERNIVSWNAMISCY-VQRGQCHEA--LDLYNQ----------MQS 338
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGK 385
+ PD L A+L+A GD+ +GK
Sbjct: 339 QGLAPDEITLVAVLSASGRIGDLTVGK 365
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 24/255 (9%)
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
A G + AR++FD +P + V ++ +I Y +EAL M G PN +
Sbjct: 57 AGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLP 116
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
+ AC A + +H R G+ + +G A++ YA G + + FD M +R
Sbjct: 117 FVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDR 176
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHY 336
+V ++ S+I G A + LF M+ +G + +E + S+ +E G +
Sbjct: 177 NVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVH 236
Query: 337 ---------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
LVD+ G+ G L A++ MPI+ ++L A HG V
Sbjct: 237 CRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIK-SVVSWTSMLCAQTKHGSV 295
Query: 382 DLGKETVESLVERSL 396
+ + + + ER++
Sbjct: 296 NAARCWFDHMPERNI 310
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 174/536 (32%), Positives = 284/536 (52%), Gaps = 80/536 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
M Q+KQ+ + + +P F GKI+ +S D+++ +R+F ++ ++F+WN
Sbjct: 61 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQL--SSSFSDVNYAFRVFDSIENHSSFMWN 118
Query: 58 TMIRGFAEK-NEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
T+IR A + +AF LY++ML R + P+ +TF F+L+ACA G H Q++
Sbjct: 119 TLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIV 178
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G+ +V NGL+HLY +C C+D +AR+
Sbjct: 179 KHGFGGDVYVNNGLIHLYGSCGCLD-------------------------------LARK 207
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE++ VSW++MI+ V+ + AL+ F MQ F P+ + L+ACA LG+
Sbjct: 208 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGS 266
Query: 236 LDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L G W HA++ R + +D+++ ++I+MY KCG + A VF M RD+ ++ ++
Sbjct: 267 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 326
Query: 293 ISGLANHDQSASAIELFMRM--QLEGVVPN------------------------ESMSEI 326
I G A H ++ A+ F RM + E V PN + M
Sbjct: 327 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 386
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDLGK 385
Y IEP ++HYGC+VDL+ RAG + A +V MP++PD + +LL+AC G V+L +
Sbjct: 387 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 446
Query: 386 ETVESLVERSLDHE-------GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
E +++ D+E G +VLLS +YAS +WN V VR+ M ++ +RK PGCS
Sbjct: 447 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 506
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV----ATEGGS 490
IE++G+ EF +G+ ++ ++I L ID L+S+ + D ++ AT GS
Sbjct: 507 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGS 562
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 123/315 (39%), Gaps = 58/315 (18%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS-------IARQMFDKMP 181
+ L TC+ M ++L ++ + + Y K Q+S A ++FD +
Sbjct: 51 IFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 110
Query: 182 EKNAVSWSAMINGYVQ-VDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
++ W+ +I V +EA + M G P+ L ACA++ +G
Sbjct: 111 NHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEG 170
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ +H + ++G D+ + +I +Y CGC++ A VFD MP R + ++ S+I L
Sbjct: 171 KQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRF 230
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ SA++LF MQ
Sbjct: 231 GEYDSALQLFREMQRS-------------------------------------------- 246
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN----IYASTEQW 415
EPD Y + ++L+AC G + LG L+ + + VL+ N +Y
Sbjct: 247 -FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 305
Query: 416 NGVEKVRRGMEDNEV 430
E+V +GM+ ++
Sbjct: 306 RMAEQVFQGMQKRDL 320
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/500 (33%), Positives = 264/500 (52%), Gaps = 50/500 (10%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+ I + + + D F V ++I CS D + + Y +F + +++ MI G
Sbjct: 44 QVPSIHAKIIRTFHDQDAFVVFELIRVCSTLD--SIDYAYDVFRYVSNPNVYLYTAMIDG 101
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F +LY +M+ S LP+NY + +L+AC C + H+QV++LG+ S
Sbjct: 102 FVSSGRSADGVSLYHRMIHSSVLPDNYVITSVLKACGLDECREI----HSQVLKLGFGSS 157
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
V L+ +Y + A+K+FD +RD + T +IN Y++ G I A ++F +
Sbjct: 158 RSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSECGCIKEALELFQDVKI 217
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW- 241
K+ V W+AMI+G V+ +ALE F MQL F +L A RW
Sbjct: 218 KDTVCWTAMIDGLVRNREMNKALELFREMQLSVF---------------YLPARIWVRWS 262
Query: 242 ----IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+H++V+ +EL +G A+I+MY++CG I A VF M ++DV +Y ++ISGLA
Sbjct: 263 SGAGVHSFVENQKMELSNFVGNALINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGLA 322
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H S AI +F M G PN+ SM ++ +EP +
Sbjct: 323 MHGASVEAINVFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQI 382
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLLGR G LE A + + M IEPD+ +LGALL+AC++HG+++LG++ + L E
Sbjct: 383 EHYGCIVDLLGRVGRLEEAYRFIENMLIEPDHIMLGALLSACKIHGNMELGEKIAKRLFE 442
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G +VLLS+IYAS+ +W ++R M ++ + K PGCS IEVD + EF G+
Sbjct: 443 SENPDSGTYVLLSHIYASSGKWKESTEIRESMRESGIEKEPGCSTIEVDNQIHEFHVGDI 502
Query: 454 TNVLMEEIVLLLFGIDKHLK 473
+ E I L ++++L+
Sbjct: 503 AHPRKEAIYQRLQELNRNLR 522
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 170/502 (33%), Positives = 255/502 (50%), Gaps = 68/502 (13%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+Q+ L G +PF +I SA G + Y++F + R W +MI G+
Sbjct: 156 EQVHCFLIKCGFRGNPFVGTTLIDMYSAG--GTVGDAYKIFCEMFERNVVAWTSMINGYI 213
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + A L+ D P D
Sbjct: 214 LSADLVSARRLF------DLAPER----------------------------------DV 233
Query: 125 VL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
VL N ++ Y M ARKLF NRDV+ W +++ GYA +G + +F++MPE+
Sbjct: 234 VLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPER 293
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
N SW+A+I GY LF E L F M PN A +V L+ACA LGALD G+W+
Sbjct: 294 NIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWV 353
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H Y + +G++ ++ +G A++DMYAKCG IE A SVF M +D+ ++ +LI GLA H +
Sbjct: 354 HVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRG 413
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A A+ LF +M+ G P+ +SM++ Y I P ++HYGC
Sbjct: 414 ADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGC 473
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VD+L RAG LE A VR+MP+E D + LL ACR++ +V+L + ++ L+E +
Sbjct: 474 MVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKN 533
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
+V+LSNIY +W V +++ M D +K+PGCSLIEV+ V EF S + + +
Sbjct: 534 PANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQI 593
Query: 459 EEIVLLLFGIDKHLKSLCFFDD 480
EEI +L G+ K L+S + D
Sbjct: 594 EEIYGVLRGLVKVLRSFGYVPD 615
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 173/382 (45%), Gaps = 65/382 (17%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+ QIQ+ + +G ++ + K++ C+ + +++ +LF + +WN+M R
Sbjct: 52 KQVHQIQAQIIANGFQYNEYITPKLVTICAT--LKRMTYARQLFDQIPDPNIALWNSMFR 109
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G+A+ + L+ QM D PN +TF +L++C + L G H +I+ G+
Sbjct: 110 GYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRG 169
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV L+ +Y+ + A K+F R+V++WTS+INGY S + AR++FD P
Sbjct: 170 NPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAP 229
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E++ V W+ M++GY++ EA + F+ M PN
Sbjct: 230 ERDVVLWNIMVSGYIEGGDMVEARKLFHEM------PNR--------------------- 262
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
D++ ++ YA G +E +F+ MP R++F++ +LI G A++
Sbjct: 263 ------------DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 310
Query: 302 SASAIELFMRMQLEG-VVPNESM-----------------------SEIYGIEPGVQHYG 337
+ F RM E V PN++ +E G++ V
Sbjct: 311 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGN 370
Query: 338 CLVDLLGRAGMLEAAKKVVREM 359
L+D+ + G++E A V R M
Sbjct: 371 ALMDMYAKCGIIENAISVFRGM 392
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+++ ARQ+FD++P+ N W++M GY Q + ++E + F M+ RPN L
Sbjct: 85 RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 144
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
+C + AL +G +H ++ + G + +GT +IDMY+ G + A +F M R+V A
Sbjct: 145 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 204
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+TS+I+G SA LF + P E V + +V G
Sbjct: 205 WTSMINGYILSADLVSARRLF------DLAP----------ERDVVLWNIMVSGYIEGGD 248
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+ A+K+ EMP D +L +G+V+ + E + ER++
Sbjct: 249 MVEARKLFHEMP-NRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNI 295
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/568 (29%), Positives = 278/568 (48%), Gaps = 90/568 (15%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
IK++ + + D + K+I S +L+ +F +Q ++NT+IR
Sbjct: 38 HIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLA--VNVFNQIQDPNVHLYNTLIRA 95
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ ++ +KAFA + M ++ +N+T+ F+L+AC L + H V + G+
Sbjct: 96 HVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGD 155
Query: 123 DFVLNGLLHLYATCNCMD---------------------------------PARKLFDMS 149
FV N L+ Y+ C + ARKLFD
Sbjct: 156 LFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM 215
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD---------- 199
RD +SW ++++GY K+G++S A +F+KMPE+N VSWS M++GY +
Sbjct: 216 AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFD 275
Query: 200 ---------------------LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
L KEA +N M+ G +P+ ++ L ACA G L
Sbjct: 276 KMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVL 335
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+ +HA + + I+ + + A++DMYAKCG ++ A S+F+ M RD+ ++ ++ GLA
Sbjct: 336 GKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAM 395
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H AI+LF +MQ EG P++ SM +GI P ++
Sbjct: 396 HGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIE 455
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC++DLLGR G LE A ++V+ MP+EP++ + G LL ACRVH V L ++ ++ L+
Sbjct: 456 HYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITL 515
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
G + +LSNI+A+ WN V +R M+ V+K G S IE+D V EF +++
Sbjct: 516 EQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKS 575
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGN 482
+ ++I +L + + LK + + + +
Sbjct: 576 HPETDKIYQILVKLGQDLKQVAYAPEAD 603
>gi|108709982|gb|ABF97777.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 523
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 242/477 (50%), Gaps = 28/477 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++Q+ + L SG DP A + + FC A D D ++ RL F+WNT I
Sbjct: 48 MAHLRQLHAALVKSGLARDPIAASRAVAFC-AGDGRDAAYAARLVRHHPRPNAFMWNTAI 106
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A+ P A AL+ ML S P TF + A A G H V++LG
Sbjct: 107 RALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGDGAGLHGMVVKLGLG 166
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N ++ +YA+ D A L D ++ S I A++G++ AR +FD M
Sbjct: 167 GDAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFDGM 226
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P + +WSAM++ Y + +A+E F+ MQ G PN +V L CA LGAL+QG
Sbjct: 227 PARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGA 286
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLA 297
W+HAY+D++ + ++ ++ TA++DMY KCG I A VFD+ +R + ++ S++ G A
Sbjct: 287 WVHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHA 346
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H Q A LF ++ G+ P+ SM+ +G+ PGV
Sbjct: 347 VHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGVVPGV 406
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVD L RAG L A+ + MP+ PD V GALL+ CR+HGD + V
Sbjct: 407 EHYGCLVDALARAGRLREAEGAIAAMPVAPDAAVWGALLSGCRLHGDAEAAARAAREAVR 466
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
G +VL ++ A + VR M + V KVPGCS+IEVDGVV EFVS
Sbjct: 467 CDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGVVHEFVS 523
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 245/462 (53%), Gaps = 29/462 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K++ +H+T +G D + ++ ++ G ++ RLF + +R WNT++ +
Sbjct: 94 KEVHAHVTKTGLDSDVYVGNALLHLYGST--GQVTDARRLFDGMPHRDLASWNTLLGAY- 150
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ ++ L+K+M+ ++ + + AC G H VI++G
Sbjct: 151 -NDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALS 209
Query: 125 VLNGLLHLYATCNCMDPARKLF-DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ N LL +Y C MD A+ LF +M+ RDV+S T L NGY G I +AR +FD+M K
Sbjct: 210 LSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVK 269
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ VSW++MI+ YV+ K+A+E F M+ P+ +V L ACA L L GR H
Sbjct: 270 DLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAH 329
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
++ +N D+ +GTA+IDMYAKCG +E A F M +RDVF +T+ I GLANH
Sbjct: 330 RFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGD 389
Query: 304 SAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCL 339
A+ LF M+ +G+ PN++ M E Y I+P ++H GCL
Sbjct: 390 KALSLFTEMEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCL 449
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
+D+L RAG+L A++ ++ MP + LL+AC H + DLG++ L E S
Sbjct: 450 LDILSRAGLLHQAEEFIKLMPPKEKIIANKTLLSACMNHLEYDLGEKIANGLTELSSQSH 509
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
H+LLSN YA QW V K RR M++ ++RKVPG S +++
Sbjct: 510 ATHILLSNFYALAGQWAEVAKTRRVMKEIDIRKVPGISSVDI 551
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 48/335 (14%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICH 111
T WN +IR F+ PI A +Y ++ F+ P+ YT+ +L+AC L G H
Sbjct: 38 TPTWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVH 97
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
A V + G +S +V N LLHLY + + AR+LFD +RD+ SW +L+ Y
Sbjct: 98 AHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY------- 150
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
NAV E L F M G +H +V +AC
Sbjct: 151 ----------NDNAV----------------EVLVLFKRMMYEGIGGDHISMVIVFSACG 184
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYT 290
+G + G+ +H YV + GI + L A++ +Y KCG ++ A S+F M RDV ++T
Sbjct: 185 KIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHT 244
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
L +G + A +F +M ++ +V SM Y +H ++L
Sbjct: 245 ILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAY---VKAKHPKKAIELF------- 294
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+K+ EM +EPD + ++L AC D+ G+
Sbjct: 295 --RKMENEM-VEPDETTMVSVLAACASLADLQNGR 326
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 169/496 (34%), Positives = 257/496 (51%), Gaps = 33/496 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M + Q+ S + S L D + ++ S G+++ R+F + R WN++I
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDM--YSKCGNVNDAQRVFDEMGDRNVVSWNSLI 225
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
F + ++A +++ ML S P+ T + ++ ACA S + VG H +V++
Sbjct: 226 TCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKL 285
Query: 121 SYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
D +L N + +YA C+ + AR +FD R+VI+ TS+I+GYA + AR MF K
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK 345
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M E+N VSW+A+I GY Q +EAL F ++ P H L ACA L L G
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405
Query: 240 RWIHAYVDRNGIEL------DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
H +V ++G + DI +G ++IDMY KCGC+E VF M RD ++ ++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
G A + A+ELF M G P+ SM+ +G+
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P HY C+VDLLGRAG LE AK ++ EMP++PD+ + G+LL AC+VH ++ LGK E
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAE 585
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L+E + G +VLLSN+YA +W V VR+ M V K PGCS I++ G F+
Sbjct: 586 KLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645
Query: 450 SGERTNVLMEEIVLLL 465
++++ ++I LL
Sbjct: 646 VKDKSHPRKKQIHSLL 661
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 156/297 (52%), Gaps = 27/297 (9%)
Query: 91 FSFILRACADT--SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
F+ +L +C + S ++V + HA VI+ G+ + F+ N L+ Y+ C ++ R++FD
Sbjct: 22 FAKLLDSCIKSKLSAIYVRYV-HASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDK 80
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
R++ +W S++ G K G + A +F MPE++ +W++M++G+ Q D +EAL +F
Sbjct: 81 MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
M GF N L+AC+ L +++G +H+ + ++ D+ +G+A++DMY+KC
Sbjct: 141 AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC 200
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G + A VFD M +R+V ++ SLI+ + + A+++F M V P+E
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260
Query: 322 -SMSEIYGIEPGVQHYG----------------CLVDLLGRAGMLEAAKKVVREMPI 361
+ + + I+ G + +G VD+ + ++ A+ + MPI
Sbjct: 261 SACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 165/356 (46%), Gaps = 45/356 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G L LF + R WN+M+ GFA+ + +A + M + F+ N Y+F+
Sbjct: 97 TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFA 156
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L AC+ + + G+ H+ + + + S ++ + L+ +Y+ C ++ A+++FD +R
Sbjct: 157 SVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDR 216
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+V+SW SLI + ++G AV EAL+ F M
Sbjct: 217 NVVSWNSLITCFEQNGP---------------AV----------------EALDVFQMML 245
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCI 271
P+ + ++ACA L A+ G+ +H V +N + DIIL A +DMYAKC I
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
+ A +FDSMP R+V A TS+ISG A + +A +F +M VV ++ Y
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
+ L LL R + P +Y +L AC ++ LG +
Sbjct: 366 ENEEALSLFCLLKRESVC-------------PTHYSFANILKACADLAELHLGMQA 408
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 170/509 (33%), Positives = 266/509 (52%), Gaps = 60/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M I ++ + L +G P A+ +++ C+AS LS+ +F + + TF +NT+I
Sbjct: 1 MNHIYKLHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTII 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A+ + K M + P+++TF F+L+ACA L GL H+ + +LG++
Sbjct: 61 RAHADSSPSFSLSLFSK-MTMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFD 116
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V NGL I+ Y G + A + F++M
Sbjct: 117 SDVYVQNGL-------------------------------IHFYGCCGFLDFALKAFEEM 145
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
PE++ VSWS+MI + + EAL F MQL G +P+ ++ ++A + LG L+ G
Sbjct: 146 PERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG 205
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WI ++ RNG+E + LGTA++DM+++CGCIE + VFD M R+V +T+LI+GLA H
Sbjct: 206 KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVH 265
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
+SA A+ +F M+ G P+ ES+ YG+EP +H
Sbjct: 266 GRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEH 325
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG+L A K V MPI P++ + LL AC H ++L ++ E + E
Sbjct: 326 YGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELD 385
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H+G +VLLSN+Y +W VR M + + K PGCSLI V+ ++ EFV+G+ +
Sbjct: 386 SYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNH 445
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E I L + LK + + D + V
Sbjct: 446 PQFESIREFLVSMIDSLKVVGYTPDISNV 474
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 174/536 (32%), Positives = 284/536 (52%), Gaps = 80/536 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
M Q+KQ+ + + +P F GKI+ +S D+++ +R+F ++ ++F+WN
Sbjct: 38 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQL--SSSFSDVNYAFRVFDSIENHSSFMWN 95
Query: 58 TMIRGFAEK-NEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
T+IR A + +AF LY++ML R + P+ +TF F+L+ACA G H Q++
Sbjct: 96 TLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIV 155
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G+ +V NGL+HLY +C C+D +AR+
Sbjct: 156 KHGFGGDVYVNNGLIHLYGSCGCLD-------------------------------LARK 184
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE++ VSW++MI+ V+ + AL+ F MQ F P+ + L+ACA LG+
Sbjct: 185 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGS 243
Query: 236 LDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L G W HA++ R + +D+++ ++I+MY KCG + A VF M RD+ ++ ++
Sbjct: 244 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 303
Query: 293 ISGLANHDQSASAIELFMRM--QLEGVVPN------------------------ESMSEI 326
I G A H ++ A+ F RM + E V PN + M
Sbjct: 304 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 363
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDLGK 385
Y IEP ++HYGC+VDL+ RAG + A +V MP++PD + +LL+AC G V+L +
Sbjct: 364 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 423
Query: 386 ETVESLVERSLDHE-------GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
E +++ D+E G +VLLS +YAS +WN V VR+ M ++ +RK PGCS
Sbjct: 424 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 483
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV----ATEGGS 490
IE++G+ EF +G+ ++ ++I L ID L+S+ + D ++ AT GS
Sbjct: 484 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGS 539
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 121/309 (39%), Gaps = 58/309 (18%)
Query: 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS-------IARQMFDKMPEKNAVS 187
TC+ M ++L ++ + + Y K Q+S A ++FD + ++
Sbjct: 34 TCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFM 93
Query: 188 WSAMINGYVQ-VDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAY 245
W+ +I V +EA + M G P+ L ACA++ +G+ +H
Sbjct: 94 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQ 153
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
+ ++G D+ + +I +Y CGC++ A VFD MP R + ++ S+I L + SA
Sbjct: 154 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA 213
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
++LF MQ EPD
Sbjct: 214 LQLFREMQ---------------------------------------------RSFEPDG 228
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN----IYASTEQWNGVEKV 421
Y + ++L+AC G + LG L+ + + VL+ N +Y E+V
Sbjct: 229 YTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQV 288
Query: 422 RRGMEDNEV 430
+GM+ ++
Sbjct: 289 FQGMQKRDL 297
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/582 (29%), Positives = 281/582 (48%), Gaps = 101/582 (17%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++ QIQ+ + G + + I C+ +G + R+F WN M RG
Sbjct: 37 RLHQIQAQIVTHGLEGNDYVTPSFITACAR--LGGIRRARRVFDKTAQPNGATWNAMFRG 94
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW--- 119
+A+ N + L+ +M R+ PN +TF ++++CA + G H V + G+
Sbjct: 95 YAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSN 154
Query: 120 --------------------ESYD----------FVLNGLLHLYATCNCMDPARKLFDMS 149
++Y F ++ + C M AR+LFD++
Sbjct: 155 TFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLA 214
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEK-------------------------- 183
RDV+ W +++GY + G + AR++FD+MP++
Sbjct: 215 PQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFE 274
Query: 184 -----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-----------FRPNHAGIVGAL 227
N SW+ +I GYV+ LFKEALE F M + PN +V L
Sbjct: 275 EMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVL 334
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
TAC+ LG L+ G+W+H Y + G + ++ +G A+IDMYAKCG IE A VFD + +D+
Sbjct: 335 TACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDII 394
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESM 323
+ ++I+GLA H A A+ LF RM+ G P+ +SM
Sbjct: 395 TWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSM 454
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
+ Y I P ++HYGC+VDLLGRAG+++ A +VR+MP+EPD + ALL ACR++ +V++
Sbjct: 455 VDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEM 514
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ ++ L+E ++ G V++SNIY + V +++ M D RKVPGCS+I +
Sbjct: 515 AELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCND 574
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
+ EF S + + + I L G+ L+S + + +VA
Sbjct: 575 SMVEFYSLDERHPETDSIYRALQGLTILLRSHGYVPNLVDVA 616
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 250/473 (52%), Gaps = 29/473 (6%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ + DL R F C+ R+ WN M+ G+A+ + L+ +M+ + P+ T+
Sbjct: 205 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWV 264
Query: 93 FILRACADT--SCLFVGLI--CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD- 147
++ AC+ CL L+ H + I+L FV LL +YA C + AR++FD
Sbjct: 265 TVISACSSRGDPCLAASLVRTLHQKQIQLNC----FVRTALLDMYAKCGSIGAARRIFDE 320
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+ R+ ++W ++I+ Y + G + AR++F+ MP +N V+W++MI GY Q A+E
Sbjct: 321 LGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL 380
Query: 208 FNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F M P+ +V ++AC LGAL+ G W+ ++ N I+L I A+I MY+
Sbjct: 381 FKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYS 440
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------ 320
+CG +E A VF M RDV +Y +LISG A H AI L M+ G+ P+
Sbjct: 441 RCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIG 500
Query: 321 -----------ESMSEIYGI--EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
E +++ +P + HY C+VDLLGR G LE AK+ + MP+EP V
Sbjct: 501 VLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGV 560
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
G+LLNA R+H V+LG+ L E D+ G +LLSNIYAS +W VE++R M+
Sbjct: 561 YGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKK 620
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
V+K G S +E G + +F+ +R++ ++I LL + K ++ + D
Sbjct: 621 GGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD 673
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/470 (24%), Positives = 198/470 (42%), Gaps = 128/470 (27%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
F++ +M+R ++ + K +++ M P+ + + ++++ + G+ H
Sbjct: 64 NVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNG-----GIGFH 118
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARK--------------------------- 144
A V++LG S FV N ++ +YA + ARK
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178
Query: 145 ------LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
LFD+ R+VI+WT+++ GYAK + AR+ FD MPE++ VSW+AM++GY Q
Sbjct: 179 EGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQN 238
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
L +E L F+ M G P+ V ++AC+ G + + + I+L+ +
Sbjct: 239 GLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVR 298
Query: 259 TAIIDMYAKCGCIETACSVFD--------------------------------SMPNRDV 286
TA++DMYAKCG I A +FD +MP R+V
Sbjct: 299 TALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNV 358
Query: 287 FAYTSLISGLANHDQSASAIELFMRM-QLEGVVPNE-SMSEIYG---------------- 328
+ S+I+G A + QSA AIELF M + + P+E +M +
Sbjct: 359 VTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVR 418
Query: 329 ------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---------------------- 360
I+ + + ++ + R G +E AK+V +EM
Sbjct: 419 FLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVE 478
Query: 361 ------------IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
IEPD +L AC G ++ G++ ES+ + ++DH
Sbjct: 479 AINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDH 528
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F+ N +++M+ Y + + + F +MQ CG RP+ A + L A G
Sbjct: 56 LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPD-AFVYPILIKSAGNGG 114
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLI 293
+ HA+V + G D + A+IDMYA+ G I A VFD +P+ R V + +++
Sbjct: 115 IG----FHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESM----SEIYGIEPGVQHYGCLVD-------- 341
SG + A LF M V+ +M +++ +E +++ C+ +
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNA 230
Query: 342 -LLGRA--GMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
L G A G+ E ++ EM IEPD +++AC GD L V +L ++
Sbjct: 231 MLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQ 290
Query: 396 L 396
+
Sbjct: 291 I 291
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 246/429 (57%), Gaps = 28/429 (6%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT---SCLFVGLI 109
T W + I + N +KA + + QML ++ PN+ T +L ACA + + + G
Sbjct: 52 TVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAA 111
Query: 110 CHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H + G+ D ++ L+ +YA C +D AR +FD R+++SW ++I+GY K+G
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ A ++FDK+P KN VSW+ +I G+V+ + ++EALE F MQL G P+ ++ ++
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA LGAL G W+H V + ++ + ++IDMYA+CGCIE A VFD M R++ +
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVS 291
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------ESMSEIYGIE 330
+ S+I G A + + A+ F M+ EG+ PN E + I+
Sbjct: 292 WNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIK 351
Query: 331 ------PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
P ++HYGCLVDL RAG L+ A V+++MP+ P+ VLG+LL ACR GDV+L
Sbjct: 352 RDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELA 411
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
++ ++ VE + +VL SNIYA+ +W+G KVRR M++ ++K S IE+D
Sbjct: 412 EKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSG 471
Query: 445 VCEFVSGER 453
+ +FVSG++
Sbjct: 472 IHKFVSGDK 480
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 142/328 (43%), Gaps = 50/328 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ +LF L + W +I GF +K +A +++M + +P+ T I+
Sbjct: 171 GDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAII 230
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L +GL H V++ + VLN L+ +YA C C++ AR++FD R+++
Sbjct: 231 SACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLV 290
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G L +AL F M+ G
Sbjct: 291 SWNSIIVGFAVNG-------------------------------LADKALSFFRSMKKEG 319
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA-IIDMYAKCGCIETA 274
PN ALTAC+ G +D+G I A + R+ I ++D+Y++ G ++ A
Sbjct: 320 LEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEA 379
Query: 275 CSVFDS---MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
V MPN V SL++ A E M+ Q+E + P
Sbjct: 380 WDVIKKMPMMPNEVVLG--SLLAACRTQGDVELA-EKVMKYQVE-LYPG----------- 424
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM 359
G +Y ++ G + A KV REM
Sbjct: 425 GDSNYVLFSNIYAAVGKWDGASKVRREM 452
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 27/240 (11%)
Query: 181 PEKN-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF---LGAL 236
P N VSW++ I+ + + + F +A F M PNH ++ L+ACA ++
Sbjct: 47 PNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSI 106
Query: 237 DQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
G +H + ++G + D+++GTA+IDMYAKCG ++ A VFD M R++ ++ ++I G
Sbjct: 107 TFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDG 166
Query: 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ A++LF ++ ++ VV S + + G G C E A +
Sbjct: 167 YMKNGDVDDALKLFDKLPVKNVV---SWTVVIG---GFVKKEC----------YEEALEC 210
Query: 356 VREMPIE---PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYA 410
REM + PD + A+++AC G + LG V LV + + V VL L ++YA
Sbjct: 211 FREMQLAGVVPDFVTVIAIISACANLGALGLGL-WVHRLVMKKEFRDNVKVLNSLIDMYA 269
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 174/536 (32%), Positives = 284/536 (52%), Gaps = 80/536 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
M Q+KQ+ + + +P F GKI+ +S D+++ +R+F ++ ++F+WN
Sbjct: 118 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQL--SSSFSDVNYAFRVFDSIENHSSFMWN 175
Query: 58 TMIRGFAEK-NEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
T+IR A + +AF LY++ML R + P+ +TF F+L+ACA G H Q++
Sbjct: 176 TLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIV 235
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G+ +V NGL+HLY +C C+D +AR+
Sbjct: 236 KHGFGGDVYVNNGLIHLYGSCGCLD-------------------------------LARK 264
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE++ VSW++MI+ V+ + AL+ F MQ F P+ + L+ACA LG+
Sbjct: 265 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGS 323
Query: 236 LDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L G W HA++ R + +D+++ ++I+MY KCG + A VF M RD+ ++ ++
Sbjct: 324 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 383
Query: 293 ISGLANHDQSASAIELFMRM--QLEGVVPN------------------------ESMSEI 326
I G A H ++ A+ F RM + E V PN + M
Sbjct: 384 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 443
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDLGK 385
Y IEP ++HYGC+VDL+ RAG + A +V MP++PD + +LL+AC G V+L +
Sbjct: 444 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 503
Query: 386 ETVESLVERSLDHE-------GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
E +++ D+E G +VLLS +YAS +WN V VR+ M ++ +RK PGCS
Sbjct: 504 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 563
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV----ATEGGS 490
IE++G+ EF +G+ ++ ++I L ID L+S+ + D ++ AT GS
Sbjct: 564 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGS 619
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 123/315 (39%), Gaps = 58/315 (18%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS-------IARQMFDKMP 181
+ L TC+ M ++L ++ + + Y K Q+S A ++FD +
Sbjct: 108 IFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 167
Query: 182 EKNAVSWSAMINGYVQ-VDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
++ W+ +I V +EA + M G P+ L ACA++ +G
Sbjct: 168 NHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEG 227
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ +H + ++G D+ + +I +Y CGC++ A VFD MP R + ++ S+I L
Sbjct: 228 KQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRF 287
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ SA++LF MQ
Sbjct: 288 GEYDSALQLFREMQ---------------------------------------------R 302
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN----IYASTEQW 415
EPD Y + ++L+AC G + LG L+ + + VL+ N +Y
Sbjct: 303 SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 362
Query: 416 NGVEKVRRGMEDNEV 430
E+V +GM+ ++
Sbjct: 363 RMAEQVFQGMQKRDL 377
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/418 (37%), Positives = 238/418 (56%), Gaps = 58/418 (13%)
Query: 106 VGLICHAQVIRLGWESYD-FVLNGLLHLYAT-----------------------CNCM-- 139
+G HA+ +R G+ + D FV L+ +YA CN M
Sbjct: 65 LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124
Query: 140 --------DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
ARK+FD RD++SW ++I+GYA G + +AR++FD +++A SWS+M
Sbjct: 125 AYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSM 184
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I+ Y + KEALE + M++ G P+ +V L+AC+ +GAL G +H +V+ N +
Sbjct: 185 ISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRV 244
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
E+D+ LGTA++DMYAKCG IE + VF +MP +DV ++S+I GLANH A+ LF
Sbjct: 245 EVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSE 304
Query: 312 MQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAG 347
M +G+ PNE SMS+++G+ P ++HYGC+VDLLGRAG
Sbjct: 305 MISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAG 364
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
+E A +++R M +PD + LL ACR+H +V++ +E + L +G +VLLSN
Sbjct: 365 HVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSN 424
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
IYA W GV ++R+ + +++VPG S IE + V EFVSG+R++ +EEI +L
Sbjct: 425 IYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKML 482
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 154/337 (45%), Gaps = 35/337 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+++ ++F + R WNTMI G+A + + + +++ + +++S ++
Sbjct: 130 GEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGD----VGMAREIFDGTRDRDAFSWSSMI 185
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM-------DPARKLFDM 148
A A C L + +R+ + D + ++ + + C+ M + R +
Sbjct: 186 SAYAKGRCSKEALELWRE-MRVAGVAPDCI--SMVSVLSACSAMGALAIGAEVHRFVESN 242
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
V D+ T+L++ YAK G I + ++F MP K+ ++WS+MI G L +AL F
Sbjct: 243 RVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLF 302
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAK 267
+ M G +PN +G L AC +G ++ G ++ + D +G+ + ++D+ +
Sbjct: 303 SEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGR 362
Query: 268 CGCIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326
G +E A + SM + D + +L+ H +E + E+M+++
Sbjct: 363 AGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKN----VE----------IAEEAMAKL 408
Query: 327 YGIEPGVQ-HYGCLVDLLGRA----GMLEAAKKVVRE 358
++P HY L ++ +A G+ E K + RE
Sbjct: 409 KVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRE 445
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 174/536 (32%), Positives = 284/536 (52%), Gaps = 80/536 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
M Q+KQ+ + + +P F GKI+ +S D+++ +R+F ++ ++F+WN
Sbjct: 52 MSQLKQLHAFTLRTTYPEEPATLFLYGKILQL--SSSFSDVNYAFRVFDSIENHSSFMWN 109
Query: 58 TMIRGFAEK-NEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
T+IR A + +AF LY++ML R + P+ +TF F+L+ACA G H Q++
Sbjct: 110 TLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIV 169
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G+ +V NGL+HLY +C C+D +AR+
Sbjct: 170 KHGFGGDVYVNNGLIHLYGSCGCLD-------------------------------LARK 198
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE++ VSW++MI+ V+ + AL+ F MQ F P+ + L+ACA LG+
Sbjct: 199 VFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGS 257
Query: 236 LDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L G W HA++ R + +D+++ ++I+MY KCG + A VF M RD+ ++ ++
Sbjct: 258 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 317
Query: 293 ISGLANHDQSASAIELFMRM--QLEGVVPN------------------------ESMSEI 326
I G A H ++ A+ F RM + E V PN + M
Sbjct: 318 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 377
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDLGK 385
Y IEP ++HYGC+VDL+ RAG + A +V MP++PD + +LL+AC G V+L +
Sbjct: 378 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 437
Query: 386 ETVESLVERSLDHE-------GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
E +++ D+E G +VLLS +YAS +WN V VR+ M ++ +RK PGCS
Sbjct: 438 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 497
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV----ATEGGS 490
IE++G+ EF +G+ ++ ++I L ID L+S+ + D ++ AT GS
Sbjct: 498 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGS 553
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 123/315 (39%), Gaps = 58/315 (18%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS-------IARQMFDKMP 181
+ L TC+ M ++L ++ + + Y K Q+S A ++FD +
Sbjct: 42 IFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 101
Query: 182 EKNAVSWSAMINGYVQ-VDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
++ W+ +I V +EA + M G P+ L ACA++ +G
Sbjct: 102 NHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEG 161
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ +H + ++G D+ + +I +Y CGC++ A VFD MP R + ++ S+I L
Sbjct: 162 KQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRF 221
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ SA++LF MQ
Sbjct: 222 GEYDSALQLFREMQRS-------------------------------------------- 237
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN----IYASTEQW 415
EPD Y + ++L+AC G + LG L+ + + VL+ N +Y
Sbjct: 238 -FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSL 296
Query: 416 NGVEKVRRGMEDNEV 430
E+V +GM+ ++
Sbjct: 297 RMAEQVFQGMQKRDL 311
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 259/476 (54%), Gaps = 28/476 (5%)
Query: 3 QIKQIQSHLTVSGTL-WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
++KQI H V G L + + +I D G +LF + R +NTMI
Sbjct: 145 EVKQIHCHALVFGLLSKEEYLRNSLIK--RYVDNGCFECARQLFDEMSDRNVVSYNTMIL 202
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
GFA+ + L+ M P+++T +L C +G HAQ+ + S
Sbjct: 203 GFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSS 262
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N LL +Y CN + ARK+FD + +D +SW ++I GYAK G++ +A +F+++P
Sbjct: 263 NLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIP 322
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
++ VSW+++I+GY Q + F M +P+ IV ++A A +GALDQGRW
Sbjct: 323 TRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRW 382
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IH + +++ G+A+IDMY KCG IE A +F+ +P +DV +T++I+G A H
Sbjct: 383 IHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGF 442
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
A+ELF MQ E PN+ SM + Y IEPGV+HYG
Sbjct: 443 GNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYG 501
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
CLVDLL R+G L A V+ +MP+EP + GA+L+ACR+H +++L + + L++ +
Sbjct: 502 CLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPE 561
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
EG ++LLSN+YA+ +W+ + +R M V+K+ GCS + VDG+V +F + +
Sbjct: 562 KEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNK 617
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 187/436 (42%), Gaps = 99/436 (22%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YRTTFIWNTMIR 61
Q KQI H+ + + F + +++ F + S +L LF Y +I+NTMI
Sbjct: 46 QFKQILGHMMRNNLVGQTFPMSRLLFFSAVSHPENLELAILLFNHFTPYPNLYIFNTMIL 105
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI----CHAQVIRL 117
GF NE KAF +Y+ ML++ P+ TF ++L+ FV + CHA V L
Sbjct: 106 GFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTTK-----FVAEVKQIHCHALVFGL 158
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
+++ N L+ Y C + AR+LFD +R+V+S+ ++I G+AK G I
Sbjct: 159 -LSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNI------- 210
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
LE F+ M+ G P+ ++G L C LG
Sbjct: 211 ------------------------LGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETK 246
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKC----------------------------- 268
G+ +HA ++++ ++IL A++DMY KC
Sbjct: 247 LGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYA 306
Query: 269 --GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
G +E AC +F+ +P RD+ ++ SLISG A + + LF RM E V P++
Sbjct: 307 KVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVN 366
Query: 322 ---SMSEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEP 363
+++E+ ++ G +G L+D+ + G +E A + ++P E
Sbjct: 367 LISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP-EK 425
Query: 364 DNYVLGALLNACRVHG 379
D ++ HG
Sbjct: 426 DVTTWTTMITGFAFHG 441
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 259/476 (54%), Gaps = 28/476 (5%)
Query: 3 QIKQIQSHLTVSGTL-WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
++KQI H V G L + + +I D G +LF + R +NTMI
Sbjct: 80 EVKQIHCHALVFGLLSKEEYLRNSLIK--RYVDNGCFECARQLFDEMSDRNVVSYNTMIL 137
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
GFA+ + L+ M P+++T +L C +G HAQ+ + S
Sbjct: 138 GFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSS 197
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N LL +Y CN + ARK+FD + +D +SW ++I GYAK G++ +A +F+++P
Sbjct: 198 NLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIP 257
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
++ VSW+++I+GY Q + F M +P+ IV ++A A +GALDQGRW
Sbjct: 258 TRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRW 317
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IH + +++ G+A+IDMY KCG IE A +F+ +P +DV +T++I+G A H
Sbjct: 318 IHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGF 377
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
A+ELF MQ E PN+ SM + Y IEPGV+HYG
Sbjct: 378 GNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYG 436
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
CLVDLL R+G L A V+ +MP+EP + GA+L+ACR+H +++L + + L++ +
Sbjct: 437 CLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPE 496
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
EG ++LLSN+YA+ +W+ + +R M V+K+ GCS + VDG+V +F + +
Sbjct: 497 KEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNK 552
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 178/416 (42%), Gaps = 99/416 (23%)
Query: 23 VGKIIGFCSASDIGDLSHGYRLFVCLQ-YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
+ +++ F + S +L LF Y +I+NTMI GF NE KAF +Y+ ML+
Sbjct: 1 MSRLLFFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQ 58
Query: 82 SDFLPNNYTFSFILRACADTSCLFVGLI----CHAQVIRLGWESYDFVLNGLLHLYATCN 137
+ P+ TF ++L+ FV + CHA V L +++ N L+ Y
Sbjct: 59 NGTYPDRQTFLYLLQTTK-----FVAEVKQIHCHALVFGL-LSKEEYLRNSLIKRYVDNG 112
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
C + AR+LFD +R+V+S+ ++I G+AK G I
Sbjct: 113 CFECARQLFDEMSDRNVVSYNTMILGFAKVGNI--------------------------- 145
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
LE F+ M+ G P+ ++G L C LG G+ +HA ++++ ++IL
Sbjct: 146 ----LGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLIL 201
Query: 258 GTAIIDMYAKC-------------------------------GCIETACSVFDSMPNRDV 286
A++DMY KC G +E AC +F+ +P RD+
Sbjct: 202 YNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDI 261
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHYG- 337
++ SLISG A + + LF RM E V P++ +++E+ ++ G +G
Sbjct: 262 VSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGL 321
Query: 338 --------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+D+ + G +E A + ++P E D ++ HG
Sbjct: 322 AVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAFHG 376
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 265/474 (55%), Gaps = 28/474 (5%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
D+++ Y+L L + WN +IRGF+ P K+ +Y Q+LRS F P++ T+ F+L+
Sbjct: 803 DVNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLK 862
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
+ + S +G H V++ G E F+ N L+H+Y + ARKLFD +++++
Sbjct: 863 SSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNLVT 922
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG- 215
W S+++ YAKSG + AR +FD+M ++ V+WS+MI+GYV+ + EALE F+ M G
Sbjct: 923 WNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGS 982
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ N +V L ACA LG L++G+ +H Y+ + L +IL T++IDMYAKCG I A
Sbjct: 983 SKANEVTMVSVLCACAHLGELNRGKVVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAW 1042
Query: 276 SVF--DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
VF S+ D + ++I GLA+H ++ LF +M+ + P+E
Sbjct: 1043 GVFCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKMRESEIDPDEITFLCLLAACSH 1102
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
S+ E G EP +HY C+VD+L RAG+++ A + EM I+P VLG
Sbjct: 1103 GGLVKEAWHFFTSLKE-SGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMLIKPTGSVLG 1161
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
AL N C HG+++L + + L+E ++G +V L+N+YA +Q+ +R ME
Sbjct: 1162 ALFNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFGAARSMREAMEKKG 1221
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
V+K+ G S+I+++G F++ ++T+ ++I +L I + +DD E
Sbjct: 1222 VKKIAGHSIIKLNGTSHRFIAHDQTHFHSDKIYAVLQLIGTGMNLDVDYDDSEE 1275
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 39/275 (14%)
Query: 31 SASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNY 89
S + GD+ +F + R W++MI G+ + E +A ++ QM+R N
Sbjct: 929 SYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEV 988
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T +L ACA L G + H R + D+
Sbjct: 989 TMVSVLCACAHLGELNRGKVVH-------------------------------RYILDVH 1017
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMF--DKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+ VI TSLI+ YAK G I A +F + + +A+ W+AMI G +E+L
Sbjct: 1018 LPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRESLLL 1077
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F+ M+ P+ + L AC+ G + + + +G E ++D+ ++
Sbjct: 1078 FHKMRESEIDPDEITFLCLLAACSHGGLVKEAWHFFTSLKESGAEPKSEHYACMVDVLSR 1137
Query: 268 CGCIETACSVFDSM---PNRDVFAYTSLISGLANH 299
G ++ A M P V +L +G NH
Sbjct: 1138 AGLVKDAHDFISEMLIKPTGSVLG--ALFNGCINH 1170
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 148/362 (40%), Gaps = 61/362 (16%)
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRL---GWESYDFVLNGLLHLYATCNCMDP 141
+PN YT++ +L A + ++ V L+ A++ + G+ F L +L +Y +
Sbjct: 174 VPNAYTYNCLLEAISKSNSSSVELV-EARLKEMRDCGFHFDKFTLTPVLQVYCNNGKSER 232
Query: 142 ARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMING 194
A +F+ ++R D T L+ + K GQ+ A ++ + + E+ N ++ +I+G
Sbjct: 233 ALSVFNEILSRGWLDEHISTILVVSFCKWGQVDKAFELIEMLEERHIRLNYKTFCVLIHG 292
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254
+V+ +A + F M+ G P+ A + L+ ++ + R+GI D
Sbjct: 293 FVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPD 352
Query: 255 I-ILGTAIIDMYAKCGCIETACSVFDSMPNRDV-FAYTSLISG----------------- 295
ILG + + + + + V Y SL+ G
Sbjct: 353 RGILGKLLCSFSEESELSRITKVIIGDIDTKSVMLLYKSLLEGFIRNDLVHEAYNFIQNL 412
Query: 296 LANHDQSA-SAIELFMRMQLEGVVPN-ESMSEIY----------------------GIEP 331
+ NH+ S I ++ Q + ++P+ +S+S + G+ P
Sbjct: 413 MGNHESDGMSEIVKLLKDQNKAILPDSDSLSIVIDCLVKANKVNMAVTLLHDIVQNGLIP 472
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVL----GALLNACRVHGDVDLG 384
+ Y +++ + + G E + K++ EM +EP Y L G L C G +DL
Sbjct: 473 SLMMYNNIIEGMCKEGRSEESLKLLAEMKDAGVEPSQYTLNCIYGCLAERCDFAGALDLL 532
Query: 385 KE 386
K+
Sbjct: 533 KK 534
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 107/279 (38%), Gaps = 41/279 (14%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
+ ++N +I G ++ ++ L +M + P+ YT + I C C F G +
Sbjct: 473 SLMMYNNIIEGMCKEGRSEESLKLLAEMKDAGVEPSQYTLNCIY-GCLAERCDFAGALDL 531
Query: 112 AQVIRL-GWESYDFVLNGLLH-LYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAK 166
+ +R G+E + L+ L +D + + D++ R ++S+T+ I G +
Sbjct: 532 LKKMRFYGFEPWIKHTTCLVKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIR 591
Query: 167 SGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
+ + ++F + +++ +I + EA FN M G +P+ A
Sbjct: 592 NEGVDRGLELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVAT 651
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ G +D+G + I+ MY +
Sbjct: 652 YNSMIDGWCKEGEIDRGL------------------SCIVRMY-------------EDEK 680
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
N DV YTSLI GL + + AI + M+ + PN
Sbjct: 681 NPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNR 719
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 158/463 (34%), Positives = 254/463 (54%), Gaps = 25/463 (5%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
F WN++I A + ++A + M + PN TF +++C+ L G H
Sbjct: 40 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
Q + G+E FV + L+ +Y+ C + AR LFD +R+++SWTS+I GY ++
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTAC 230
A ++FD M E++ +SW+++I Y Q + E++E F+ M G N + L AC
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 219
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
A G+ G+ IH V + G+E ++ +GT+IIDMY KCG +E A FD M ++V +++
Sbjct: 220 AHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWS 279
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
++++G H + A+E+F M + GV PN ++MS
Sbjct: 280 AMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHE 339
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+ +EPGV+HYGC+VDLLGRAG L+ A +++ M + PD V GALL ACR+H +VDLG+
Sbjct: 340 FDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEI 399
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+ L E + G +VLLSNIYA +W VE++R M+++ + K PG SL+++ G V
Sbjct: 400 SARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVH 459
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
F+ G+R + E+I L + L+ + + D V + G
Sbjct: 460 VFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVG 502
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 120/316 (37%), Gaps = 64/316 (20%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP------ 86
S G+L LF + +R W +MI G+ + ++ +A ++ M D +
Sbjct: 122 SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIA 181
Query: 87 --------------------------NNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
N T S +L ACA + +G H QVI++G E
Sbjct: 182 VYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE 241
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV ++ +Y C ++ ARK FD ++V SW++++ GY G
Sbjct: 242 SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHA---------- 291
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG- 239
KEALE F M + G +PN+ V L AC+ G L++G
Sbjct: 292 ---------------------KEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W A +E + ++D+ + G ++ A + M R F + G
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 390
Query: 300 DQSASAIELFMRMQLE 315
++ E+ R E
Sbjct: 391 HKNVDLGEISARKLFE 406
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 52/269 (19%)
Query: 145 LFDMSVNR-DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
LF+ V++ +V SW S+I A+SG E
Sbjct: 31 LFNKYVDKTNVFSWNSVIAELARSGDSV-------------------------------E 59
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
AL F+ M+ +PN + A+ +C+ L L GR H G E D+ + +A++D
Sbjct: 60 ALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVD 119
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM 323
MY+KCG + A ++FD + +R++ ++TS+I+G +D + A+ +F M V+ S+
Sbjct: 120 MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSI 179
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
+Y + G+ +E ++V++ I + L A+L AC G L
Sbjct: 180 IAVYA-QNGMS-----------TESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 227
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYAST 412
GK + +++ L+ SN++ T
Sbjct: 228 GKCIHDQVIKMGLE--------SNVFVGT 248
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 253/463 (54%), Gaps = 29/463 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ + +G WD + ++ + +G + ++F + R +WN M+R +
Sbjct: 66 RKVHAAAVKTGFRWDAYTASSLLEMYTM--LGRVDFARKVFDEMPQRFLVLWNMMMRCYI 123
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
A AL ++M RS P+ T + AC+ L +G A + + S
Sbjct: 124 RCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSLP- 182
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N LL +Y ++ A K+F R++ISWT L++GYA +GQ+ AR +F + +K+
Sbjct: 183 VANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKD 242
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+ W+AMIN VQ F+EAL F MQL P+ +V LT CA +GALDQG WIH
Sbjct: 243 LILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQ 302
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y + +++D +LGTA+I+MY+KCG ++ + +F M RD A+T++I GLA + Q++
Sbjct: 303 YAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASK 362
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ELF MQ P+ ++M EIY IEP ++HY CLV
Sbjct: 363 ALELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLV 422
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVL-GALLNACRVHGDVDLGKETVESLV-ERSLDH 398
+LLG AG+L A+K++R+MP+ D L GALL AC+ +G+V++ + + + E +
Sbjct: 423 NLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKEDCSQN 482
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
V+VL+SN+YA+ +W +VR M V+K GCS+IEV
Sbjct: 483 PDVNVLMSNVYATASRWEESIRVRSKMTHPAVKKTAGCSMIEV 525
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 142/332 (42%), Gaps = 51/332 (15%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
N +IR A + + A+Y + + ++YT+ F+LRA G HA ++
Sbjct: 15 NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVK 74
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ + + LL +Y +D ARK+FD R ++ W ++ Y + G+ + A +
Sbjct: 75 TGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVAL 134
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
++M A P+ +V A+TAC+ G L
Sbjct: 135 AEEMERSGAT-------------------------------PDRVTLVTAVTACSRAGDL 163
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
GR I AY+D + + A++DMY K G +E A +F MP R++ ++T L+SG
Sbjct: 164 SLGRRIRAYMD-GVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGY 222
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
A Q A LF + + ++ +M I VQH G E A +
Sbjct: 223 AVAGQLDKARMLFYQCTQKDLILWTAM-----INACVQH-----------GSFEEALTLF 266
Query: 357 REMP---IEPDNYVLGALLNACRVHGDVDLGK 385
R+M +EPD + + LL C G +D G+
Sbjct: 267 RDMQLQRVEPDKFTVVTLLTCCANIGALDQGE 298
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 242/448 (54%), Gaps = 56/448 (12%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WNT+I G+ P KA + QM + + T +L ACA T + VG +CHA V+
Sbjct: 76 WNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVV 135
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
G+E NC +SL++ YAK G + AR+
Sbjct: 136 LNGFE---------------INCYIG----------------SSLVSMYAKCGMVEEARR 164
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F++MPE+N V W++MI G Q FKEA++ F MQ+ G + + A I +++C +GA
Sbjct: 165 VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGA 224
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
LD GR++HAY D +G+ ++ + ++IDMY+KCG + A +F + RDVF +T +I G
Sbjct: 225 LDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMG 284
Query: 296 LANHDQSASAIELFMRMQLE-GVVPNE------------------------SMSEIYGIE 330
A + A++LF +M+ E V+PNE MS++Y +
Sbjct: 285 FAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLV 344
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P ++HYGC+VDLLGRA +L A++ +++MP+ PD V +LL ACR G V L + E
Sbjct: 345 PRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAER 404
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
+ + G HVLLSN+YA+T +W V VR GM ++ K PGCS IEVDG + EF +
Sbjct: 405 IEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFA 464
Query: 451 GERTNVLMEEIVLLLFGIDKHLKSLCFF 478
G+ ++ E I LFGI++ L + F
Sbjct: 465 GDESHFETEAICNTLFGINELLVAESFL 492
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 30/204 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F + R W +MI G + +A L++ M + ++ T + ++
Sbjct: 157 GMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVV 216
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+C L +G HA G V N L+ +Y+ C ++ A ++F RDV
Sbjct: 217 SSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVF 276
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+WT +I G+A +G A +F +M ++ V
Sbjct: 277 TWTVMIMGFAMNGLCVEALDLFAQMEGEDKV----------------------------- 307
Query: 216 FRPNHAGIVGALTACAFLGALDQG 239
PN +G LTAC+ G ++QG
Sbjct: 308 -MPNEVIFLGVLTACSHGGLVEQG 330
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTF 91
S GD++ Y++F L R F W MI GFA ++A L+ QM D +PN F
Sbjct: 255 SKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIF 314
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGW-------ESYDFV-----LNGLLHLYATCNCM 139
+L AC+ H ++ G+ + Y+ V ++ L +
Sbjct: 315 LGVLTACS-----------HGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLL 363
Query: 140 DPARKLF-DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
A + DM V DV+ W SL+ SGQ+ +A +++ +
Sbjct: 364 AEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQ 407
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 242/448 (54%), Gaps = 56/448 (12%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WNT+I G+ P KA + QM + + T +L ACA T + VG +CHA V+
Sbjct: 164 WNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVV 223
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
G+E NC +SL++ YAK G + AR+
Sbjct: 224 LNGFE---------------INCY----------------IGSSLVSMYAKCGMVEEARR 252
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F++MPE+N V W++MI G Q FKEA++ F MQ+ G + + A I +++C +GA
Sbjct: 253 VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGA 312
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
LD GR++HAY D +G+ ++ + ++IDMY+KCG + A +F + RDVF +T +I G
Sbjct: 313 LDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMG 372
Query: 296 LANHDQSASAIELFMRMQLE-GVVPNE------------------------SMSEIYGIE 330
A + A++LF +M+ E V+PNE MS++Y +
Sbjct: 373 FAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLV 432
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P ++HYGC+VDLLGRA +L A++ +++MP+ PD V +LL ACR G V L + E
Sbjct: 433 PRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAER 492
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
+ + G HVLLSN+YA+T +W V VR GM ++ K PGCS IEVDG + EF +
Sbjct: 493 IEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFA 552
Query: 451 GERTNVLMEEIVLLLFGIDKHLKSLCFF 478
G+ ++ E I LFGI++ L + F
Sbjct: 553 GDESHFETEAICNTLFGINELLVAESFL 580
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 30/204 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F + R W +MI G + +A L++ M + ++ T + ++
Sbjct: 245 GMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVV 304
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+C L +G HA G V N L+ +Y+ C ++ A ++F RDV
Sbjct: 305 SSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVF 364
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+WT +I G+A +G A +F +M ++ V
Sbjct: 365 TWTVMIMGFAMNGLCVEALDLFAQMEGEDKV----------------------------- 395
Query: 216 FRPNHAGIVGALTACAFLGALDQG 239
PN +G LTAC+ G ++QG
Sbjct: 396 -MPNEVIFLGVLTACSHGGLVEQG 418
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTF 91
S GD++ Y++F L R F W MI GFA ++A L+ QM D +PN F
Sbjct: 343 SKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIF 402
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGW-------ESYDFV-----LNGLLHLYATCNCM 139
+L AC+ H ++ G+ + Y+ V ++ L +
Sbjct: 403 LGVLTACS-----------HGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLL 451
Query: 140 DPARKLF-DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
A + DM V DV+ W SL+ SGQ+ +A +++ +
Sbjct: 452 AEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQ 495
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 255/462 (55%), Gaps = 25/462 (5%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W +I G++ +A + ML P+ T +L ACA L G
Sbjct: 200 RNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSL 259
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQ 169
H V G ++ L+ +YA C + A ++FD + R SW ++I+GY K G
Sbjct: 260 HKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGH 319
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ +AR +FD+M +++ V+++++I GY+ +EAL F M+ R ++ +V LTA
Sbjct: 320 VDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTA 379
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGAL QGR +HA +++ +E+DI LGTA++DMY KCG +E A VF +M RDV +
Sbjct: 380 CASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTW 439
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
+++I+GLA + +A+E F M+++G PN E M
Sbjct: 440 SAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRL 499
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
++ I P ++HYGC++DLLGR+G+L+ A +VR MP++P+ + ++L+ACRVH D +L +
Sbjct: 500 LHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLAR 559
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
E L++ D + V+V L NIY + QW ++RR ME+ V+K G S I V G V
Sbjct: 560 NAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQV 619
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
+F+ +RT+ + EI ++ I + LKS+ + +++ +
Sbjct: 620 HKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVD 661
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 193/404 (47%), Gaps = 23/404 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYR---TTFIW 56
++Q ++ + L SG L P + ++ + D H R +CL R +TF++
Sbjct: 12 VRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLH-LRYALCLFDRMPCSTFLF 70
Query: 57 NTMIRG-FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD-TSCLFVGLICHAQV 114
+T +R F + P LY++M R+ + +TF F+ + CA + + + + HA
Sbjct: 71 DTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAAC 130
Query: 115 IRLGWES-YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
R S V N ++H+Y AR+ FD +D ++WT++I+G AK G + A
Sbjct: 131 FRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDA 190
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+ P +N +SW+ +I+GY + EA++ FN M G P+ ++G L+ACA L
Sbjct: 191 WCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQL 250
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSL 292
L GR +H V G+ + L A+IDMYAKCG I A VFD++ R ++ ++
Sbjct: 251 KDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAM 310
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
I G A LF +M+ +V S+ G H G L R +L
Sbjct: 311 IDGYCKLGHVDVARYLFDQMEDRDLVTFNSLIT------GYIHGGRL-----REALLLFM 359
Query: 353 KKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+ +R + DN+ + +LL AC G + G+ + + +E+ L
Sbjct: 360 Q--MRRHDLRADNFTMVSLLTACASLGALPQGR-ALHACIEQRL 400
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 47/301 (15%)
Query: 15 GTLWDPF-AVGK----------IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
G W+ F A+G+ I G+C +G + LF ++ R +N++I G+
Sbjct: 289 GRAWEVFDALGRGRRPQSWNAMIDGYCK---LGHVDVARYLFDQMEDRDLVTFNSLITGY 345
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+A L+ QM R D +N+T +L ACA L G HA + + E
Sbjct: 346 IHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDI 405
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
++ LL +Y C ++ A +F RDV +W+++I G A +G
Sbjct: 406 YLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNG--------------- 450
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WI 242
+ K ALE+F +M++ GF+PN + LTAC+ LD+GR +
Sbjct: 451 ----------------MGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYF 494
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANHDQ 301
+ I I +ID+ + G ++ A + +MP + + + S++S H
Sbjct: 495 EEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKD 554
Query: 302 S 302
+
Sbjct: 555 A 555
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/488 (32%), Positives = 265/488 (54%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G +++ +LF + + WN MI G+ E +A LYK M++++
Sbjct: 138 ITGYASR---GYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T ++ ACA + + +G H+ + G+ S ++N L+ LY+ C
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKC--------- 245
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F + +K+ +SW+ +I G+ ++L+KEAL
Sbjct: 246 ----------------------GEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEAL 283
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIID 263
F M G PN ++ L ACA LGA+D GRWIH Y+++ G+ L T++ID
Sbjct: 284 LLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLID 343
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VFDSM R + ++ ++I G A H ++ +A +LF +M+ G+ P++
Sbjct: 344 MYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDIT 403
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SMS+ Y I P ++HYGC++DLLG G+ + AK+++R M
Sbjct: 404 FVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTM 463
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
P+EPD + +LL AC++H +V+LG+ ++L++ ++ G +VLLSNIYA+ +W+ V
Sbjct: 464 PMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVA 523
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
K+R + D ++K PGCS IE+D VV EF+ G++ + EI +L ++ ++ F
Sbjct: 524 KIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVP 583
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 584 DTSEVLQE 591
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 218/429 (50%), Gaps = 68/429 (15%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
LS+ +F +Q IWNTM RG A ++ + A LY M+ LPN+Y+F F+L++
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
CA + L G H V++LG++ +V L+ +YA ++ A K+FD S +R V+S+
Sbjct: 75 CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+LI GYA G I+ AR++FD++ K+ VSW+AMI+GYV+ FKEALE + M +
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+ + +V ++ACA G+++ GR +H++++ +G +I + +ID+Y+KCG +ETAC +
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYG 337
F + +DV ++ +LI G + + A+ LF M G PN+ + + P H G
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT--MLSVLPACAHLG 312
Query: 338 C---------------------------LVDLLGRAGMLEAAKKV--------------- 355
L+D+ + G +EAAK+V
Sbjct: 313 AIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAM 372
Query: 356 -------------------VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL----- 391
+R+ I+PD+ LL+AC G +DLG+ S+
Sbjct: 373 IFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYK 432
Query: 392 VERSLDHEG 400
+ L+H G
Sbjct: 433 ITPKLEHYG 441
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 162/510 (31%), Positives = 261/510 (51%), Gaps = 61/510 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ + D++ ++F + R I N MIR + + ++ M P++YTF
Sbjct: 86 ASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFP 145
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L+AC+ + + +G H ++G S FV NGL+ +Y C + AR + D R
Sbjct: 146 CVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRR 205
Query: 153 DVISWTSLINGYAKSGQISIA-------------------------------------RQ 175
DV+SW SL+ GYA++ + A +
Sbjct: 206 DVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKD 265
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
MF KM +K+ VSW+ MI Y++ + EA+E ++ M+ GF P+ I L AC A
Sbjct: 266 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSA 325
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L G+ IH Y++R + +++L A+IDMYAKCGC++ A VF++M +RDV ++T++IS
Sbjct: 326 LSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISA 385
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
+ A+ LF +MQ G+VP+ + M++ Y I P
Sbjct: 386 YGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 445
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++H C+VDLLGRAG ++ A K ++EMP+EP+ V GALL ACRVH + D+G + L
Sbjct: 446 RLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKL 505
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+ + + G +VLLSNIYA +W V +R M+ ++K PG S +EV+ ++ F+ G
Sbjct: 506 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 565
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDDG 481
+R++ EI L + K +K L + D
Sbjct: 566 DRSHPQSAEIYRELDVLVKKMKELGYVPDS 595
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
L+ YA ++ AR++FD++PE+N + + MI YV ++E ++ F M C +P+
Sbjct: 81 LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
H L AC+ G + G+ IH + G+ + +G ++ MY KCG + A V D
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
M RDV ++ SL++G A + + A+E+ M+
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREME 234
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 268/497 (53%), Gaps = 26/497 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+ +++ + + +G F G ++GF A G + G ++F ++ +W +I
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVAC--GLVGKGRQVFDEMRQPGLVLWTLII 164
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + P KA L++ M P+ S ++ AC L V H + + G E
Sbjct: 165 RAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIE 224
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV + L+ Y C +D A + F + ++++ W ++I+ + + + +Q+F M
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSM 284
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+++ VSW++MI G+ ++ ++EAL F+ M+ G PN ++ L+ACA GALD G
Sbjct: 285 PDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGA 344
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAYVD+N + D L +++IDMY+KCG I+ A +F+ RD+F +TS++ GLA H
Sbjct: 345 WIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHG 404
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+ F +M+ V P+ +SM +++G+ P V+HY
Sbjct: 405 RGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHY 464
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGR G L+ A ++ MP+E + + GA L+ACRVH +V+LG+ L+
Sbjct: 465 GCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDP 524
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
V+LSN+YA +W+ +R+ ++ ++K PGCS IEV+G V F+ G+ ++
Sbjct: 525 RDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHP 584
Query: 457 LMEEIVLLLFGIDKHLK 473
EI ++ I+K ++
Sbjct: 585 CYTEINSMVEKIEKLMR 601
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 144/339 (42%), Gaps = 58/339 (17%)
Query: 54 FIWNTMIR-----GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
F+WNTMIR G ++ P+ Y Q LR+ PN +TF ++L+A + G
Sbjct: 55 FVWNTMIRKQVENGLITRDPPL---LYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGE 111
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HA V+R G+ +FV LL Y C + R++FD
Sbjct: 112 EVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFD--------------------- 150
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+M + V W+ +I YV V ++ALE F M+ G P+ I ++
Sbjct: 151 ----------EMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVS 200
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LG L + +H +++++GIE+D + + +I Y +CG ++ A F P +++
Sbjct: 201 ACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVV 260
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+ ++I H+ +LF M VV SM + R G
Sbjct: 261 WNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSM----------------IGGFARIGQ 304
Query: 349 LEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLG 384
+ A EM + P+ L + L+AC HG +D G
Sbjct: 305 YQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG 343
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 26/238 (10%)
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQ--LCGFRPNHAGIVGALTACAFLGALDQGRW 241
N W+ MI V+ L YMQ G RPN + L A + +G
Sbjct: 53 NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+HA V R G + A++ Y CG + VFD M + +T +I
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172
Query: 302 SASAIELFMRMQLEGVVPN-----------------------ESMSEIYGIEPGVQHYGC 338
A+ELF M+ G+ P+ E GIE
Sbjct: 173 PEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L+ G G L+ A + +E P++ + V +++ H +++LGK+ +S+ +R +
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDV 289
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 158/455 (34%), Positives = 251/455 (55%), Gaps = 28/455 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L H L + TT + + I + + + AL ML LP +T S L
Sbjct: 70 GRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASL 129
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC S +G HA +L +V LL +YA AR LFD + V+
Sbjct: 130 PACRGLS---LGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVV 186
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
S T+++ YA G + AR++FD +P K+ + W+AMI+GY Q EAL+ F M
Sbjct: 187 SVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSS 246
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETA 274
P+ +V L+A A LG ++ G+W+H+YV + ++L++ + TA++DMY KCG +E A
Sbjct: 247 AEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDA 306
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
+VF + N+D+ + ++I+G A H S A+E+F++++ +G+ P
Sbjct: 307 VAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHS 366
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
+SM YGI+P ++HYGC+VDLLGRAG++E A +V+ + I PD + +
Sbjct: 367 GLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVS 426
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACR+H ++ LG+ + LV L + G+++LLSNIYA+ +W V +VR M+ + +
Sbjct: 427 LLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGI 486
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
+K PGCS IE+D V EFV+G+ ++ +EI +L
Sbjct: 487 QKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAML 521
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 34/288 (11%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DP V +++G L RLF L + WN MI G+ + +P +A L+++
Sbjct: 182 DPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRR 241
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLLHLYATCN 137
MLRS P+ T +L A A + G H+ V + V L+ +Y C
Sbjct: 242 MLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCG 301
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
++ A +F N+D++ W ++INGYA G
Sbjct: 302 SLEDAVAVFHGIGNKDIVVWNAMINGYAMHGD---------------------------- 333
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDII 256
++ALE F ++ G P +G L AC+ G +++GR + + GI+ I
Sbjct: 334 ---SRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIE 390
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSA 303
++D+ + G IE A + S+ D + SL++ H A
Sbjct: 391 HYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMA 438
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 125/324 (38%), Gaps = 63/324 (19%)
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTS----LINGYAKSGQISIARQMFDKMPEKNAVS 187
L A C+ A +L V + + S + L YA SG++ + + + + +
Sbjct: 30 LLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIF 89
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
+++ I+ + L L + M G P + +L AC L GR +HAY
Sbjct: 90 YTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACR---GLSLGRALHAYAF 146
Query: 248 RNGIELDIILGTAIIDM-------------------------------YAKCGCIETACS 276
+ + D + TA++ M YA G ++ A
Sbjct: 147 KLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARR 206
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYG 328
+FD +P +D + ++I G H + A++LF RM P+E +++++
Sbjct: 207 LFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGT 266
Query: 329 IEPG------VQHYGC----------LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+E G V++ C LVD+ + G LE A V + D V A++
Sbjct: 267 VESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIG-NKDIVVWNAMI 325
Query: 373 NACRVHGDVDLGKETVESLVERSL 396
N +HGD E L ++ L
Sbjct: 326 NGYAMHGDSRKALEMFVQLRDQGL 349
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 173/525 (32%), Positives = 277/525 (52%), Gaps = 54/525 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQ+QSHLT G F K+I FCS ++ +L + +++F + +++ +I
Sbjct: 19 LNQLKQLQSHLTTLGHSQTHFYAFKLIRFCSL-NLSNLHYAHQIFNHIHSPNIYLFTAII 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
F+ + F L+K ML S+ PNN+ + +L++ + F+ + HAQ+++ G+
Sbjct: 78 TAFSSQQHT--TFKLFKTMLNSNIRPNNFIYPHVLKSVKER---FLVDLVHAQIVKCGFL 132
Query: 121 SYDFVLNGLLHLYATC-NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+Y V L+ Y+ + A K+FD R+++ +T L++GY + G + +FD+
Sbjct: 133 NYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDE 192
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC----------GFRPNHAGIVGALTA 229
M +++ +W+A+I+G Q F E + F M G +PN +V L+A
Sbjct: 193 MVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSA 252
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
C G L G+WIH YV R+G +D + A++DMY KCG +E A VF+ + + ++
Sbjct: 253 CGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQRKGLTSW 312
Query: 290 TSLISGLANHDQSASAIELFMRMQLE---GVVPNE------------------------S 322
S+I+ A H + AI F +M +E GV P+E
Sbjct: 313 NSMINCYALHGKCEDAITFFEKM-VECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEM 371
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
M + YGIEP + HYGCL+DLLGRAG + A VV+ M +EPD V G+LLN C+VHG D
Sbjct: 372 MIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTD 431
Query: 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
L + + LVE + G +L+NIY +W+ + V ++ + K+PGCS IEVD
Sbjct: 432 LAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVWSKLKQQKSYKIPGCSWIEVD 491
Query: 443 GVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
V +F S +++N EE L+ I L+SL F +G+EV E
Sbjct: 492 DKVHQFFSLDQSNPKTEE----LYNI---LESL--FGNGSEVVVE 527
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 156/512 (30%), Positives = 265/512 (51%), Gaps = 60/512 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWN 57
+ ++ Q+ +H+ G +P + K ++S++ + + L ++ F+++
Sbjct: 20 LPKLAQLHTHIIKLGFQNNPLVLTKFTS--ASSNLDAIPYAMSLVFSVEDARVYDAFLFS 77
Query: 58 TMIRGFAEKNEPI-KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
T+IR +AE ++ A Y ML PN Y F F+L+ACA L +G H +++
Sbjct: 78 TIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVK 137
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G++ FV N ++H+Y C SG + AR++
Sbjct: 138 FGFDDDIFVQNTMVHMYCCC------------------------------SGGMEFARKL 167
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD+MP+ + V+W+AMI GY ++ A+ F MQ+ G P+ +V L+AC LGAL
Sbjct: 168 FDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGAL 227
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ G+WI +Y+++ + + L A++DM+AKCG ++ A +F +M R + ++TS+I GL
Sbjct: 228 ELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGL 287
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A H + A+ LF M+ G+VP + M+ +GI P
Sbjct: 288 AMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPK 347
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLL RAG++ A + V MPIEP+ + L++ACRVHG++ LG+ + L+
Sbjct: 348 IEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLI 407
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
HE +VLLSNIY W K+R M ++KVPG ++IE+D + EF+ G+
Sbjct: 408 RNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGD 467
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
R++ EI+ ++ + + +K + EV
Sbjct: 468 RSHNQYNEIIKMVNEMGREMKRAGYAPTTTEV 499
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 166/471 (35%), Positives = 247/471 (52%), Gaps = 59/471 (12%)
Query: 23 VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS 82
+ K+ F + S GDL++ L ++ +NT++R F++ P F L
Sbjct: 30 LSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSM 89
Query: 83 DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
P+N+TF F+L+ C+ + +G HA + +LG+ ++ N LLH+Y+
Sbjct: 90 PSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYS-------- 141
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
+ G + +AR +FD+MP ++ VSW++MI G V DL
Sbjct: 142 -----------------------EFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPV 178
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII--LGTA 260
EA+ F M CG N A ++ L ACA GAL GR +HA ++ GIE+ + TA
Sbjct: 179 EAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTA 238
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++DMYAK GCI +A VFD + +RDVF +T++ISGLA+H AI++F+ M+ GV P+
Sbjct: 239 LVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPD 298
Query: 321 E------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
E + YG++P +QH+GCLVDLL RAG L+ A+ V
Sbjct: 299 ERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFV 358
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL--DHEGVHVLLSNIYASTEQ 414
MPIEPD + L+ AC+VHGD D + ++ L + + D G ++L SN+YAST +
Sbjct: 359 NAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGK 418
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
W +VR M + K PG S IEVDG V EFV G+ + EEI + L
Sbjct: 419 WCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVEL 469
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 148/326 (45%), Gaps = 37/326 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ + LT G D + ++ S+ GDL LF + +R W +MI G
Sbjct: 115 KQLHALLTKLGFAPDLYIQNVLLHM--YSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLV 172
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE--SY 122
+ P++A L+++ML+ N T +LRACAD+ L +G HA + G E S
Sbjct: 173 NHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSK 232
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
V L+ +YA C+ ARK+FD V+RDV WT++I+G A G
Sbjct: 233 SNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHG-------------- 278
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
L K+A++ F M+ G +P+ + LTAC G + +G +
Sbjct: 279 -----------------LCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFML 321
Query: 243 HAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHD 300
+ V R G++ I ++D+ A+ G ++ A ++MP D + +LI H
Sbjct: 322 FSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHG 381
Query: 301 QSASAIELFMRMQLEGVVPNESMSEI 326
+ A L ++++ + ++S S I
Sbjct: 382 DADRAERLMKHLEIQDMRADDSGSYI 407
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 249/473 (52%), Gaps = 28/473 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD++ +F + + +WN MI G+ + AF L+++M+ + +TF+ +L
Sbjct: 246 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 305
Query: 96 RACADTSCLFVGLICHAQVIRLGW----ESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
ACA+ G H Q+IRL E+ V N L+ LY+ + A+++FD
Sbjct: 306 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 365
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+DV+SW ++++GY SG + A ++F MP KN +SW M++GYV L ++AL+ FN M
Sbjct: 366 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 425
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ +P GA+ AC LGAL GR +HA++ + G E G A++ MYAKCG +
Sbjct: 426 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 485
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
A VF MPN D ++ ++IS L H A+ELF +M EG+ P+
Sbjct: 486 NDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTAC 545
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
ESM +GI PG HY L+DLLGR+G + A+ +++ MP EP +
Sbjct: 546 NHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI 605
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
A+L+ CR +GD++ G + L H+G ++LLSN Y++ +W +VR+ M D
Sbjct: 606 WEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 665
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
V+K PGCS IEV + F+ G+ + +E+ L I ++ L + D
Sbjct: 666 RGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPD 718
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 170/356 (47%), Gaps = 29/356 (8%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVG-- 107
R T + N M+ FA + A +++ +L S L P++Y+F+ ++ A L
Sbjct: 123 RDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC 182
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP---ARKLFDMSVNRDVISWTSLINGY 164
H V++ G + V N L+ LY C+ + ARK+ D ++D ++WT+++ GY
Sbjct: 183 TQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGY 242
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
+ G ++ AR +F+++ K V W+AMI+GYVQ + +A E F M +
Sbjct: 243 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302
Query: 225 GALTACAFLGALDQGRWIHAYVDR---NGI-ELDIILGTAIIDMYAKCGCIETACSVFDS 280
L+ACA G G+ +H + R N + E + + A++ +Y+K G I A +FD+
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340
M +DV ++ +++SG + A+E+F V+P ++ + G H
Sbjct: 363 MNLKDVVSWNTILSGYIDSGCLDKAVEVFK------VMPYKNDLSWMVMVSGYVH----- 411
Query: 341 DLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
G+ E A K+ +M ++P +Y + AC G + G++ LV+
Sbjct: 412 -----GGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQ 462
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 32/250 (12%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
D G L +F + Y+ W M+ G+ A L+ QM D P +YT++
Sbjct: 380 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 439
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+ AC + L G HA +++ G+E+ + N LL +YA C ++ AR +F + N D
Sbjct: 440 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 499
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
+SW ++I+ + G +EALE F+ M
Sbjct: 500 SVSWNAMISALGQHGH-------------------------------GREALELFDQMVA 528
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIE 272
G P+ + LTAC G +D+G + R+ GI +ID+ + G I
Sbjct: 529 EGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIG 588
Query: 273 TACSVFDSMP 282
A + +MP
Sbjct: 589 EARDLIKTMP 598
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 158 TSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
TSL+ A +G++ A FD +P ++ V +AM++ + + L A+ F+ + G
Sbjct: 96 TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155
Query: 216 -FRPNHAGIVGALTACAFLG--ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
RP+ ++A + A +H V ++G + + A+I +Y KC E
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215
Query: 273 T---ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
A V D MP++D +T+++ G +A +F
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVF 255
>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
Length = 573
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 160/446 (35%), Positives = 251/446 (56%), Gaps = 32/446 (7%)
Query: 69 PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW-ESYDFVLN 127
P A L+ +LRS P+ + L +CA HA + G+ S+ V
Sbjct: 59 PHLALRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRC 118
Query: 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG-QISIARQMFDKMPEKNAV 186
L+H YA C + AR++FD + D+++W L+ GYA+ G + R F +MP +++V
Sbjct: 119 RLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSV 178
Query: 187 SWSAMINGYVQVDLFKEALEHFNYM---QLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
SW+ +++ V + EA+ F M Q C +P+ +V ++A A+LGAL QG W H
Sbjct: 179 SWNTVLSLCVVNGEYDEAIAVFREMLASQEC--QPDRVTLVSVVSAIAYLGALAQGLWAH 236
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQS 302
AYV R G+E++ L +A+I+MY+KCG +E A VFD++ R + + ++++G + S
Sbjct: 237 AYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCS 296
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A+ LF RM+ G++PN + MS +YGIEP + HYGC
Sbjct: 297 GRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGC 356
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDL RAGM E A+++++ MP+EPD +L ALL ACR H +++LGK+ L+E + +
Sbjct: 357 MVDLFCRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPND 416
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
+VLLSNIYA W V KVR+ M D V K PG S +E++GV+ EF+SG++++
Sbjct: 417 HAGYVLLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRK 476
Query: 459 EEIVLLLFGIDKHLKSLCFFDDGNEV 484
+I +L I + LKS + D ++V
Sbjct: 477 RDIYKMLDEICQQLKSAGYTPDTSQV 502
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 34/254 (13%)
Query: 32 ASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYT 90
A + GD F + R + WNT++ E +A A++++ML S + P+ T
Sbjct: 156 AQEGGDADLLRDFFARMPSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVT 215
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MS 149
++ A A L GL HA VIR G E + + + L+++Y+ C ++ A +FD +
Sbjct: 216 LVSVVSAIAYLGALAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVR 275
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
R + +W +++ G+ +G AL F
Sbjct: 276 GKRSLDTWNAMLAGFTANG-------------------------------CSGRALALFT 304
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKC 268
M+ G PN L AC+ G +++G + R GIE DI ++D++ +
Sbjct: 305 RMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRA 364
Query: 269 GCIETACSVFDSMP 282
G E A + MP
Sbjct: 365 GMFEKAEEIIQIMP 378
>gi|242078691|ref|XP_002444114.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
gi|241940464|gb|EES13609.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
Length = 718
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 225/372 (60%), Gaps = 10/372 (2%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL----FV 106
R+ + + +IR + P A LY +LR+ LP +T +L++ A + +
Sbjct: 35 RSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAAPGVAVL 94
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYAT-CNCMDPARKLFDMSVNRDVISWTSLINGYA 165
L HA ++LG E + V N L+ ++A + L + D ++ +LI YA
Sbjct: 95 ALTVHAHAVKLGLERFVLVSNALIRVHAGFLGRLADGLLLLRTAAAVDASTFNTLITAYA 154
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++G+++ AR +FD+MP +NAVSWSAM+NGYVQ +EAL+ F MQ RP+ +VG
Sbjct: 155 RAGRVADARALFDEMPVRNAVSWSAMVNGYVQAGDAREALQIFAQMQAEDVRPDDTVLVG 214
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
L ACA GAL+QG+W+H Y+ +GI + + GTA++DMY+KCG ++ A VF+ M +++
Sbjct: 215 VLAACAQHGALEQGKWVHGYLKAHGIRITVFFGTALVDMYSKCGEVQLAMEVFERMEDKN 274
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-----ESMSEIYGIEPGVQHYGCLV 340
V A+T++I LA H + + A+ LF +M G+V +SM YGI+P ++HYGC+V
Sbjct: 275 VLAWTTMIKSLAMHGRGSEALMLFTQMVSSGLVDKGRELFDSMVRKYGIKPKIEHYGCMV 334
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLL R G L+ AK+++++MP++PD + GAL+ CR H +V+L + V + D G
Sbjct: 335 DLLARNGFLDEAKEMIQKMPMKPDALIWGALMAGCRFHKNVELAEYVVRHWILLEPDKSG 394
Query: 401 VHVLLSNIYAST 412
+VLL+NIYA++
Sbjct: 395 AYVLLANIYAAS 406
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 258/476 (54%), Gaps = 60/476 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL LF + +R +W +MI G+ + + P +A LYK+M F P+ T + ++
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLV 187
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L VG+ H+ + + DM + +
Sbjct: 188 SACAELKDLGVGMKLHSHI-----------------------------REMDMKIC--AV 216
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
++L+N YAK G + ARQ+FDK+ +K+ +WSA+I GYV+ + EAL+ F ++ G
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR--EVAG 274
Query: 216 ---FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
RPN I+ ++ACA LG L+ GRW+H Y+ R + L ++IDM++KCG I+
Sbjct: 275 GSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDID 334
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
A +FDSM +D+ ++ S+++G A H A+ F MQ + P+E
Sbjct: 335 AAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACS 394
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
+ +YG+ +HYGC+VDLL RAG+L A++ +R MP++PD +
Sbjct: 395 HAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIW 454
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G++L ACRV+ +++LG+E L++ ++GV++LLSNIYA + WN V+KVR M +
Sbjct: 455 GSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEK 514
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++K PGCS + +D + F++G+ ++ + EI ++L + + LK + D +EV
Sbjct: 515 GIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEV 570
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 117/245 (47%), Gaps = 20/245 (8%)
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-Q 212
V+S SL GYA S +F E + ++W++M+ +V ++ + AL+ + M +
Sbjct: 20 VLSMGSLGVGYAYS--------VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
P+ L CA L G+ +H V + + D+ + T +++MYA CG ++
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYGIEP 331
+A +F+ M +R+ +TS+ISG + A+ L+ +M+ +G P+E +M+ +
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++ G + L +REM ++ + AL+N GD+ ++ + L
Sbjct: 192 ELKDLGVGMKLHSH----------IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKL 241
Query: 392 VERSL 396
++ +
Sbjct: 242 SDKDV 246
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GD+ R+F + Y+ WN+M+ GFA +A A ++ M +D P+ TF
Sbjct: 328 SKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFI 387
Query: 93 FILRACA 99
+L AC+
Sbjct: 388 GVLTACS 394
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/505 (33%), Positives = 269/505 (53%), Gaps = 35/505 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K QI S + S L D + ++ S G + + +F + R+ WN++I
Sbjct: 167 LKLGSQIHSLVYRSNYLSDVYMGSALVDM--YSKCGRVEYAQSVFDEMTVRSRVSWNSLI 224
Query: 61 RGFAEKNEPI-KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ E+N P+ +A ++ +M++ P+ T + ++ ACA S + G HA+V++
Sbjct: 225 TCY-EQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDE 283
Query: 120 ESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
D +L N LL +YA CN ++ AR +FDM R V+S TS+++GYAK+ ++ +AR MF
Sbjct: 284 FRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFS 343
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
M K+ ++W+A+I G Q +EAL F ++ P H L ACA L L
Sbjct: 344 NMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQL 403
Query: 239 GRWIHAYVDRNGIEL------DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
GR H++V ++G D+ +G ++IDMY KCG +E C VF M +D ++ ++
Sbjct: 404 GRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAM 463
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYG 328
I G A + A+E+F +M G P+ SM+ +G
Sbjct: 464 IVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHG 523
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
+ P HY C+VDLLGRAG LE AK ++ EM ++PD V G+LL AC+VH ++ LG+ V
Sbjct: 524 LMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVV 583
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ L+E ++ G +VLLSN+YA W V +VR+ M V K PGCS IE+ G + F
Sbjct: 584 KKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVF 643
Query: 449 VSGERTNVLMEEIVLLLFGIDKHLK 473
+ ++ + +EI ++L I + +K
Sbjct: 644 MVKDKRHARKKEIYMVLRTILQQMK 668
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 158/308 (51%), Gaps = 25/308 (8%)
Query: 80 LRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
L+ D L ++ FS +L CA + HA +I+ + S F+ N L+ +Y C C
Sbjct: 10 LKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGC 69
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D ARKLFD + R++ SW S+I + KSG + A +F+KMP+ + SW++MI+G+ Q
Sbjct: 70 VDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQH 129
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
F EAL +F M GF N AL+ACA L L G IH+ V R+ D+ +G
Sbjct: 130 GRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMG 189
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+A++DMY+KCG +E A SVFD M R ++ SLI+ + A+++F+ M GV
Sbjct: 190 SALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVE 249
Query: 319 PNE--------SMSEIYGIEPGVQHYG----------------CLVDLLGRAGMLEAAKK 354
P+E + + I I+ G Q + L+D+ + + A+
Sbjct: 250 PDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARI 309
Query: 355 VVREMPIE 362
+ MPI
Sbjct: 310 IFDMMPIR 317
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 164/359 (45%), Gaps = 45/359 (12%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
C+ + G L +F + WN+MI GF + +A + QM FL N Y
Sbjct: 93 CAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEY 152
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
+F L ACA L +G H+ V R + S ++ + L+ +Y+ C ++ A+ +FD
Sbjct: 153 SFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEM 212
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
R +SW SLI Y ++G + EAL+ F
Sbjct: 213 TVRSRVSWNSLITCYEQNGPVD-------------------------------EALKIFV 241
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKC 268
M CG P+ + ++ACA + A+ +G+ IHA V + + D+ILG A++DMYAKC
Sbjct: 242 EMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKC 301
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328
I A +FD MP R V + TS++SG A + A +F M ++ V+ ++ I G
Sbjct: 302 NRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNAL--IAG 359
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
++ L+ ++++ + P +Y G LLNAC D+ LG++
Sbjct: 360 CTQNGENEEALILF-----------RLLKRESVWPTHYTFGNLLNACANLADLQLGRQA 407
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 268/497 (53%), Gaps = 30/497 (6%)
Query: 4 IKQIQSHLTVSGTLW--DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+KQI + G L+ P A + + + +G+ ++F +Q + ++I
Sbjct: 19 LKQIHAQALTQGLLFIEQPLACKLVNRY---AKLGNPRDAQKVFGYIQDPDRVTYTSLIN 75
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ PIKAF+++ +++ P++++ L AC L G + H + R +
Sbjct: 76 LYLSTQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGA 135
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
V N L+ +Y + A+ +F +DV SWTSL+NG+ + AR++FD+MP
Sbjct: 136 NSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMP 195
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGR 240
+N V+W+AMI GYV+ + LE F M+ G +P V L+ CA LGA D G+
Sbjct: 196 WRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQ 255
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H Y+ + ++ + + A++DMY+K GC+E+A +FD + +DVF++T++IS ++H
Sbjct: 256 AVHGYISKVNLDKGVTVSNALMDMYSKGGCVESAMKIFDRLVKKDVFSWTTMISAHSSHG 315
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
+ A+E+F M GV+PN+ M + YG EP ++HY
Sbjct: 316 KGNHALEVFYDMLESGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIEHY 375
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLL RAG+LE AK+++ MP++PD + +LL+AC ++ L + + ++E
Sbjct: 376 GCMVDLLCRAGLLEEAKELIDNMPMDPDAVIWRSLLSACMNQRNLGLAEIAGKKIIELEP 435
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+GV+VLLSNIY + K+R+ M D +V K P CS IE++GVV +F + T+
Sbjct: 436 HDDGVYVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPACSYIELNGVVHQFHTENATHH 495
Query: 457 LMEEIVLLLFGIDKHLK 473
+I +LL I++HL+
Sbjct: 496 ASTKIYMLLEMINEHLR 512
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/479 (34%), Positives = 259/479 (54%), Gaps = 30/479 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQI V+G + +I + + L+H ++F + +N MI
Sbjct: 79 ISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAH--QVFEKMPSPDIVSFNVMI 136
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+A+K ++A L+ +M+ P+ +T +L +C + G H + R
Sbjct: 137 VGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPT 196
Query: 121 -SYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
S + +L N LL +Y C ++ A + F +D++SW ++ G AK G++ AR F
Sbjct: 197 ISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFY 256
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP ++ VSW++++ GY F E M + P+ ++ ++A GALDQ
Sbjct: 257 QMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQ 316
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GRW H +V R I+LD LG+A+IDMY KCG IE A VF + +DV +T++I+GLA
Sbjct: 317 GRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAF 376
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H + A+ELF MQ E V P++ SM++ YGIEPGV+
Sbjct: 377 HGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVE 434
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGCLVDLL R+G L AK ++ +MP++P + GA+LNAC+ GDV+L + L+
Sbjct: 435 HYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNL 494
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ EG + LLSNIYA++ +W+ +K+R ME V+K GCS + VDGVV F+S ++
Sbjct: 495 DPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHNFISADK 553
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/492 (33%), Positives = 259/492 (52%), Gaps = 64/492 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S GD ++F + R WN MI G+ E +A L+K+M+R++
Sbjct: 137 ITGYASR---GDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRL----GWESYDFVLNGLLHLYATCNCMDP 141
P+ T ++ ACA + + +G H+ V G+ S ++N L+ LY+ C
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC----- 248
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
G + A +F+ + K+ VSW+ +I GY +L+
Sbjct: 249 --------------------------GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLY 282
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN--GIELDIILGT 259
KEAL F M G PN ++ L ACA LGA+D GRWIH Y+D+ G+ + L T
Sbjct: 283 KEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRT 342
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
++IDMYAKCG IE A VF+SM R + ++ ++I G A H ++ +A +LF RM+ V P
Sbjct: 343 SLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP 402
Query: 320 NE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
++ SM++ Y + P ++HYGC++DLLG +G+ + A+++
Sbjct: 403 DDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEM 462
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
+ MP+EPD + +LL AC+ HG+++L + + L++ ++ G +VLLSNIYA+ +W
Sbjct: 463 IHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRW 522
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
V +VR + ++KVPGCS IEVD VV EF+ G++ + EI +L +D L+
Sbjct: 523 EDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEA 582
Query: 476 CFFDDGNEVATE 487
F D +EV E
Sbjct: 583 GFAPDTSEVLQE 594
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 212/421 (50%), Gaps = 67/421 (15%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L + +F +Q IWNTM+RG A ++P+ A +Y +M+ LPN+Y+F F+L++
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
CA + G HAQV++LG +V L+ +YA ++ ARK+FD S +RDV+S
Sbjct: 74 CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+LI GYA G AR++FD++ E++ VSW+AMI GYV+ ++EALE F M R
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCIET 273
P+ +V ++ACA G+++ GR +H++V D +G + + A+ID+Y+KCG +ET
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
A +F+ + +DV ++ +LI G + + A+ LF M G PN+ + + P
Sbjct: 254 AFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVT--LLSVLPAC 311
Query: 334 QHYGC---------------------------LVDLLGRAGMLEAAKKVVREM------- 359
H G L+D+ + G +EAA +V M
Sbjct: 312 AHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS 371
Query: 360 ---------------------------PIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+EPD+ LL+AC G +DLG++ +S+
Sbjct: 372 WNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMT 431
Query: 393 E 393
+
Sbjct: 432 Q 432
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 266/490 (54%), Gaps = 57/490 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K ++QI + + ++G + K++ F A+ +S+ RLF + TF+++++I
Sbjct: 32 LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAA-SPISYTRRLFFSIPKPDTFLFHSLI 90
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
++ + P ++ Y++ML ++ +NYTFS ++++ AD + +G H V G+
Sbjct: 91 TLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGY- 149
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
GL D +L++ YAKSG + IAR++FDKM
Sbjct: 150 -------GL-----------------------DAYVQAALVSFYAKSGHVMIARKVFDKM 179
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEK V+W++MI+GY Q KEA+E F MQ G +P+ + V L+ACA +GA+ G
Sbjct: 180 PEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGF 239
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H Y+ RN +L+++LGTA+++MY++CG + A VFDSM +++ A+T++ISG H
Sbjct: 240 WVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHG 299
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
+ AIELF M +G PN +M + YG+ P V+H
Sbjct: 300 HGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQ 359
Query: 337 GCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
C+VD+LGRAG L A + ++ P EP V A+L AC++H + DLG E E L+
Sbjct: 360 VCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIE 419
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
++ G +V+LSNIYA + + VEK+R M N ++K G S I+VD V F G++++
Sbjct: 420 PENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSH 479
Query: 456 VLMEEIVLLL 465
+I L L
Sbjct: 480 PKTNQIYLYL 489
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 257/465 (55%), Gaps = 35/465 (7%)
Query: 8 QSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN 67
+S+L VS L +A+ +GF ++F + R WNT+I G+++ N
Sbjct: 148 ESYLFVSNALIHMYAMCGQLGFAQ-----------KMFDGMLDRDLVSWNTLICGYSQYN 196
Query: 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
+ + L+ M ++ + T I+ AC+ + E ++ N
Sbjct: 197 KYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGN 256
Query: 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
L+ +Y + + A+ +FD R+++SW +L+ G+AK G ++ AR++FD MP+++ +S
Sbjct: 257 TLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVIS 316
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
W++MI GY Q F +A++ F M +P+ + L+ACA LG LD G +H Y+
Sbjct: 317 WTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIR 376
Query: 248 RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIE 307
R+G++ DI +G ++IDMY KCG +E A VF M ++D ++TS+ISGLA + + SA++
Sbjct: 377 RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALD 436
Query: 308 LFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLL 343
LF +M EGV P ESM ++G+ P ++HYGC+VDLL
Sbjct: 437 LFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLL 496
Query: 344 GRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403
R+G ++ A + +++MPI PD V LL+AC++HG+V L + + L+E G +V
Sbjct: 497 SRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYV 556
Query: 404 LLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
LLSN YA ++W+ K+R MED++V+K G S IEVDG+V +
Sbjct: 557 LLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 601
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 181/383 (47%), Gaps = 51/383 (13%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K++ +HL + DPF + +I S S +L + +F ++ T +WN MIRG +
Sbjct: 34 KELHAHLIRTQLHTDPFLMSDVIRSYSLSST-NLHKAHLVFNQIECPTLVVWNHMIRGLS 92
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + P++A +Y +M NN T F+ +ACA S + G H ++LG+ESY F
Sbjct: 93 QSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLF 152
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N L+H+YA C + A+K+FD ++RD++SW +LI GY+
Sbjct: 153 VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYS------------------- 193
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
Q + +KE L F+ M + + +V + AC+ LG + +
Sbjct: 194 ------------QYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVK 241
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+ N +E+D+ LG +IDMY + E A VFD M R++ ++ +L+ G A +
Sbjct: 242 YIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTA 301
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PI 361
A +LF M V+ SM Y +A A K+ +EM +
Sbjct: 302 ARKLFDNMPKRDVISWTSMITGY----------------SQASQFSDAVKLFQEMMAAKV 345
Query: 362 EPDNYVLGALLNACRVHGDVDLG 384
+PD + ++L+AC G +D+G
Sbjct: 346 KPDKVTVASVLSACAHLGKLDVG 368
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 118/267 (44%), Gaps = 23/267 (8%)
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA 190
HL T DP F MS DVI SL S + A +F+++ V W+
Sbjct: 39 HLIRTQLHTDP----FLMS---DVIRSYSL-----SSTNLHKAHLVFNQIECPTLVVWNH 86
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
MI G Q D EA+ + M G N+ ++ ACA + + GR IH + + G
Sbjct: 87 MIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLG 146
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
E + + A+I MYA CG + A +FD M +RD+ ++ +LI G + +++ + LF
Sbjct: 147 FESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFD 206
Query: 311 RMQLEGVVPNE-SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
M + + +M +I C LG ++ K ++E +E D Y+
Sbjct: 207 AMTAANIKADAVTMVKII--------LAC--SHLGDWEFADSMVKYIKENNLEIDVYLGN 256
Query: 370 ALLNACRVHGDVDLGKETVESLVERSL 396
L++ +L + + + ER++
Sbjct: 257 TLIDMYGRRSLAELAQGVFDRMRERNI 283
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 249/473 (52%), Gaps = 28/473 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD++ +F + + +WN MI G+ + AF L+++M+ + +TF+ +L
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307
Query: 96 RACADTSCLFVGLICHAQVIRLGW----ESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
ACA+ G H Q+IRL E+ V N L+ LY+ + A+++FD
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+DV+SW ++++GY SG + A ++F MP KN +SW M++GYV L ++AL+ FN M
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 427
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ +P GA+ AC LGAL GR +HA++ + G E G A++ MYAKCG +
Sbjct: 428 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 487
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
A VF MPN D ++ ++IS L H A+ELF +M EG+ P+
Sbjct: 488 NDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTAC 547
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
ESM +GI PG HY L+DLLGR+G + A+ +++ MP EP +
Sbjct: 548 NHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI 607
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
A+L+ CR +GD++ G + L H+G ++LLSN Y++ +W +VR+ M D
Sbjct: 608 WEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 667
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
V+K PGCS IEV + F+ G+ + +E+ L I ++ L + D
Sbjct: 668 RGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPD 720
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 176/387 (45%), Gaps = 25/387 (6%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRGFAEKNEPIKAFALY 76
DP V + + G L F V R T + N M+ FA + A +++
Sbjct: 91 DPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVF 150
Query: 77 KQMLRSDFL-PNNYTFSFILRACADTSCLFVGLIC--HAQVIRLGWESYDFVLNGLLHLY 133
+L S L P++Y+F+ ++ A L H V++ G + V N L+ LY
Sbjct: 151 HALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALY 210
Query: 134 ATCNCMDP---ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA 190
C+ + ARK+ D ++D ++WT+++ GY + G ++ AR +F+++ K V W+A
Sbjct: 211 MKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNA 270
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-- 248
MI+GYVQ + +A E F M + L+ACA G G+ +H + R
Sbjct: 271 MISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQ 330
Query: 249 -NGI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
N + E + + A++ +Y+K G I A +FD+M +DV ++ +++SG + A+
Sbjct: 331 PNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAV 390
Query: 307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
E+F V+P ++ + G H G D L + A ++P +Y
Sbjct: 391 EVFK------VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED-------VKPCDY 437
Query: 367 VLGALLNACRVHGDVDLGKETVESLVE 393
+ AC G + G++ LV+
Sbjct: 438 TYAGAIAACGELGALKHGRQLHAHLVQ 464
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 32/250 (12%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
D G L +F + Y+ W M+ G+ A L+ QM D P +YT++
Sbjct: 382 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 441
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+ AC + L G HA +++ G+E+ + N LL +YA C ++ AR +F + N D
Sbjct: 442 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 501
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
+SW ++I+ + G +EALE F+ M
Sbjct: 502 SVSWNAMISALGQHGH-------------------------------GREALELFDQMVA 530
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIE 272
G P+ + LTAC G +D+G + R+ GI +ID+ + G I
Sbjct: 531 EGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIG 590
Query: 273 TACSVFDSMP 282
A + +MP
Sbjct: 591 EARDLIKTMP 600
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 11/223 (4%)
Query: 98 CADTSCLFVGLICHAQVIR---LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
C +S L HA+++ L S+ + L+HLY + LF +
Sbjct: 35 CPSSSFLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSDPDPGP 94
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
++ TSL+ +A +G++ A FD +P ++ V +AM++ + + L A+ F+ +
Sbjct: 95 VAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALL 154
Query: 213 LCG-FRPNHAGIVGALTACAFLG--ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
G RP+ ++A + A +H V ++G + + A+I +Y KC
Sbjct: 155 GSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCD 214
Query: 270 CIET---ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
E A V D MP++D +T+++ G +A +F
Sbjct: 215 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVF 257
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 247/469 (52%), Gaps = 25/469 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ LF + +R T W MI G+A+ +A L +++ RS LP+ + + I
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC++ L G H+ +++G + F N L+ +Y C M+ AR++F V +D++
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S + ++ + AR FD M ++ VSW+ +I+ Y + EA+ F M
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN + L C LGA G+ IH + G++ ++I+ A+I MY KCGC ++
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSR- 605
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD M RD+F + ++I+G A H AI+++ M+ GV+PNE
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SMS+ YG+ P +HY C+VDLLGR G ++ A++ + +MPIEPD + AL
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L AC++H + ++GK E L + G +V+LSNIY+S W V +VR+ M+ V
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
K PGCS ++ + FV+G++ + +EEIV L + LK+ + D
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPD 834
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 30/345 (8%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G + +F + R WN+MI + P A LY + + S
Sbjct: 47 LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106
Query: 95 LRACADTSCLFVGLICHAQVIRLGW-ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
R +G + A+ + G E N ++ Y + AR+LFD +RD
Sbjct: 107 GR---------LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V SW S++ GY S Q+ AR +F+KMPE+N VSW+ MI+GY +++ +A + F M
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR 217
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK-CGCIE 272
G P+ + AL+A LG LD + + G E D+++GTAI+++Y++ ++
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI--- 329
TA F+SM R+ + ++++I+ L++ + +AI ++ R ++ + ++ I G+
Sbjct: 278 TAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL--ITGLAQC 335
Query: 330 --------------EPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
EP V + L+ + GM+ AK++ +MP
Sbjct: 336 GRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMP 380
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 157/380 (41%), Gaps = 58/380 (15%)
Query: 23 VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS 82
+G I + D L + F + R + W+TMI + A A+Y++
Sbjct: 261 IGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERD--- 317
Query: 83 DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
+++ A + L GL A C +D A
Sbjct: 318 -----------PVKSIACRTALITGL-------------------------AQCGRIDDA 341
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
R LF+ V+SW +LI GY ++G ++ A+++FDKMP +N +SW+ MI GY Q +
Sbjct: 342 RILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSE 401
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EAL + G P+ + + AC+ + AL+ G +H+ + G + + A+I
Sbjct: 402 EALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALI 461
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
MY KC +E A VF M +D+ ++ S ++ L +D A R + ++ +
Sbjct: 462 TMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA-----RNTFDNMLSRDD 516
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHG 379
+S + ++ A A + M E P++ +L LL C G
Sbjct: 517 VS-----------WTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565
Query: 380 DVDLGKETVESLVERSLDHE 399
+G++ ++ +D E
Sbjct: 566 ASKIGQQIHTVAIKLGMDSE 585
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
++ I + G++ AR++FD MP ++ ++W++MI+ Y + A + ++ + R
Sbjct: 38 SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETACS 276
GA+ + G L GR + A +G +E + + A+I Y + G I A
Sbjct: 98 ------TGAILLSGY-GRL--GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336
+FD+MP+RDV ++ S+++G + Q A LF +M +V M YG ++++
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYG---RIENH 205
Query: 337 GCLVDL---LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
G D+ + R G+L PD + L+A + G++D+
Sbjct: 206 GKAWDIFCKMHREGLL-------------PDQSNFASALSAVKGLGNLDV 242
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
EL++ +A I + G + A VFD+MP RD+ A+ S+IS ++ +A +L+
Sbjct: 31 ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-- 88
Query: 312 MQLEGVVPNESMSEIYGIEPGVQHYGC-LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
I G G L+ GR G + A++V M +E + A
Sbjct: 89 ---------------DAISGGNMRTGAILLSGYGRLGRVLEARRVFDGM-LERNTVAWNA 132
Query: 371 LLNACRVHGDVDLGKETVESLVERSL 396
+++ +GD+ + + +++ R +
Sbjct: 133 MISCYVQNGDITMARRLFDAMPSRDV 158
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 168/503 (33%), Positives = 275/503 (54%), Gaps = 60/503 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGK--IIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWN 57
+ +++QI + G +GK I S +S+ +++F ++ FIWN
Sbjct: 30 ITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWN 89
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIR 116
T+IRG+AE I AF+LY++M S + P+ +T+ F+++A + + +G H+ VIR
Sbjct: 90 TLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIR 149
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ S +V N LLHLYA C + A K+FD +D+++W S+ING+A++G+
Sbjct: 150 SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK------- 202
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
PE EAL + M G +P+ IV L+ACA +GAL
Sbjct: 203 ----PE--------------------EALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
G+ +H Y+ + G+ ++ ++D+YA+CG +E A ++FD M +++ ++TSLI GL
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 297 ANHDQSASAIELFMRMQ-LEGVVPNE------------------------SMSEIYGIEP 331
A + AIELF M+ EG++P E M E Y IEP
Sbjct: 299 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 358
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++H+GC+VDLL RAG ++ A + ++ MP++P+ + LL AC VHGD DL + +
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQI 418
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ +H G +VLLSN+YAS ++W+ V+K+R+ M + V+KVPG SL+EV V EF+ G
Sbjct: 419 LQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMG 478
Query: 452 ERTNVLMEEIVLLLFGIDKHLKS 474
++++ + I L + L+S
Sbjct: 479 DKSHPQSDAIYAKLKEMTGRLRS 501
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/441 (35%), Positives = 242/441 (54%), Gaps = 55/441 (12%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
N+MIR + + N+ + + ++ M + LP++ TF +L+A A VG + H VI+
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
+G+ + L+HLY TC IS A Q+
Sbjct: 118 MGFICDVYTSTALVHLYCTC-------------------------------LSISDASQL 146
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD+MPE+NAV+W+A+I GY F +A++ F M G +P+ +V L+AC+ LGA
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+QG+WIH ++ N + L++ +GTA+IDMYAKCG + VF+ + ++V+ + LISG
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A + Q +A++ F RM +E P+E SM + +G++P
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLLGRAG+LE A ++++ M IEPD + ALL ACRVHG+ LG+ ++ L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E ++ +VLLSNIY+ +W V K+R M +RKVPGCS IE++ VV EFV+
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASN 446
Query: 453 RTNVLMEEIVLLLFGIDKHLK 473
E I L + K LK
Sbjct: 447 DRKPEFEAIYKQLDNLIKKLK 467
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 49/347 (14%)
Query: 29 FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88
+C+ I D S +LF + R WN +I G+ + +KA ++ ML P+
Sbjct: 134 YCTCLSISDAS---QLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
T +L AC+ G H + FV L+ +YA C + K+F+
Sbjct: 191 RTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEE 250
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++V +W LI+GYA +GQ A Q F +M +N
Sbjct: 251 IREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMEN------------------------ 286
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAK 267
F+P+ +G L AC G + +GRW + + G++ I ++D+ +
Sbjct: 287 -------FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGR 339
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPNES--- 322
G +E A + SM D + +L+ H + + R+ +LE PN
Sbjct: 340 AGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE---PNNGENY 396
Query: 323 --MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+S IY E G L ++ G+ +KV IE +N V
Sbjct: 397 VLLSNIYSRERRWAEVGKLRGMMSLRGI----RKVPGCSSIEINNVV 439
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
+++G SIAR N+ ++MI Y+ ++ +L F M P+ +
Sbjct: 34 SRNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFP 93
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L A A L G+ IH V + G D+ TA++ +Y C I A +FD MP R
Sbjct: 94 AVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPER 153
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+ + +LI+G ++ + AI+ F M +G P+E
Sbjct: 154 NAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 247/469 (52%), Gaps = 25/469 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ LF + +R T W MI G+A+ +A L +++ RS LP+ + + I
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC++ L G H+ +++G + F N L+ +Y C M+ AR++F V +D++
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S + ++ + AR FD M ++ VSW+ +I+ Y + EA+ F M
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEH 546
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN + L C LGA G+ IH + G++ ++I+ A+I MY KCGC ++
Sbjct: 547 ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSR- 605
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD M RD+F + ++I+G A H AI+++ M+ GV+PNE
Sbjct: 606 RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAG 665
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SMS+ YG+ P +HY C+VDLLGR G ++ A++ + +MPIEPD + AL
Sbjct: 666 LVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSAL 725
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L AC++H + ++GK E L + G +V+LSNIY+S W V +VR+ M+ V
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVI 785
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
K PGCS ++ + FV+G++ + +EEIV L + LK+ + D
Sbjct: 786 KEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPD 834
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 30/345 (8%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G + +F + R WN+MI + P A LY + + S
Sbjct: 47 LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106
Query: 95 LRACADTSCLFVGLICHAQVIRLGW-ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
R +G + A+ + G E N ++ Y + AR+LFD +RD
Sbjct: 107 GR---------LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V SW S++ GY S Q+ AR +F+KMPE+N VSW+ MI+GY +++ +A + F M
Sbjct: 158 VSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR 217
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK-CGCIE 272
G P+ + AL+A LG LD + + G E D+++GTAI+++Y++ ++
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI--- 329
TA F+SM R+ + ++++I+ L++ + +AI ++ R ++ + ++ I G+
Sbjct: 278 TAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL--ITGLAQC 335
Query: 330 --------------EPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
EP V + L+ + GM+ AK++ +MP
Sbjct: 336 GRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMP 380
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 157/380 (41%), Gaps = 58/380 (15%)
Query: 23 VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS 82
+G I + D L + F + R + W+TMI + A A+Y++
Sbjct: 261 IGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERD--- 317
Query: 83 DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
+++ A + L GL A C +D A
Sbjct: 318 -----------PVKSIACRTALITGL-------------------------AQCGRIDDA 341
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
R LF+ V+SW +LI GY ++G ++ A+++FDKMP +N +SW+ MI GY Q +
Sbjct: 342 RILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSE 401
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EAL + G P+ + + AC+ + AL+ G +H+ + G + + A+I
Sbjct: 402 EALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALI 461
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
MY KC +E A VF M +D+ ++ S ++ L +D A R + ++ +
Sbjct: 462 TMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA-----RNTFDNMLSRDD 516
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHG 379
+S + ++ A A + M E P++ +L LL C G
Sbjct: 517 VS-----------WTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565
Query: 380 DVDLGKETVESLVERSLDHE 399
+G++ ++ +D E
Sbjct: 566 ASKIGQQIHTVAIKLGMDSE 585
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
++ I + G++ AR++FD MP ++ ++W++MI+ Y + A + ++ + R
Sbjct: 38 SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETACS 276
GA+ + G L GR + A +G +E + + A+I Y + G I A
Sbjct: 98 ------TGAILLSGY-GRL--GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336
+FD+MP+RDV ++ S+++G + Q A LF +M +V M YG ++++
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYG---RIENH 205
Query: 337 GCLVDL---LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
G D+ + R G+L PD + L+A + G++D+
Sbjct: 206 GKAWDIFCKMHREGLL-------------PDQSNFASALSAVKGLGNLDV 242
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
EL++ +A I + G + A VFD+MP RD+ A+ S+IS ++ +A +L+
Sbjct: 31 ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY-- 88
Query: 312 MQLEGVVPNESMSEIYGIEPGVQHYGC-LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
I G G L+ GR G + A++V M +E + A
Sbjct: 89 ---------------DAISGGNMRTGAILLSGYGRLGRVLEARRVFDGM-LERNTVAWNA 132
Query: 371 LLNACRVHGDVDLGKETVESLVERSL 396
+++ +GD+ + + +++ R +
Sbjct: 133 MISCYVQNGDITMARRLFDAMPSRDV 158
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/491 (33%), Positives = 255/491 (51%), Gaps = 33/491 (6%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI S + S L D + ++ S G+++ ++F + R WN++I + +
Sbjct: 173 QIHSLIAKSPCLSDVYIGSALVDM--YSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQ 230
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
++A +++ ML S P+ T + ++ ACA S + VG HA+V+++ D +
Sbjct: 231 NGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDII 290
Query: 126 L-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L N + +YA C+ + AR +FD R+VI+ TS+++GYA + AR MF KM E+N
Sbjct: 291 LSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERN 350
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+A+I GY Q +EAL F ++ P H L ACA L L G H
Sbjct: 351 VVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHV 410
Query: 245 YVDRNGIEL------DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+V ++G + DI +G ++IDMY KCGC+E VF M RD ++ ++I G A
Sbjct: 411 HVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQ 470
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
+ A+ELF M G P+ SM+ +G+ P
Sbjct: 471 NGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRD 530
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY C+VDLLGRAG LE AK ++ EMP++PD+ + G+LL AC+VH ++ LGK E L E
Sbjct: 531 HYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEV 590
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +VLLSN+YA +W VR+ M V K PGCS I++ G F+ +++
Sbjct: 591 ETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKS 650
Query: 455 NVLMEEIVLLL 465
+ ++I LL
Sbjct: 651 HPRKKQIHSLL 661
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 132/232 (56%), Gaps = 1/232 (0%)
Query: 91 FSFILRACADTSCLFVGLIC-HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
F+ +L +C + + C HA VI+ G+ + F+ N L+ YA C ++ R+LFD
Sbjct: 22 FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
R+V +W S++ G K G + A +F MPE++ +W++M++G+ Q D +EAL +F
Sbjct: 82 PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M GF N L+AC+ L +++G IH+ + ++ D+ +G+A++DMY+KCG
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+ A VFD M +R+V ++ SLI+ + + A+++F M V P+E
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDE 253
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 164/356 (46%), Gaps = 45/356 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G L LF + R WN+M+ GFA+ + +A + M + F+ N YTF+
Sbjct: 97 TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFA 156
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L AC+ + + G+ H+ + + S ++ + L+ +Y+ C ++ A+++FD +R
Sbjct: 157 SGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDR 216
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+V+SW SLI Y ++G A ++F M E SW
Sbjct: 217 NVVSWNSLITCYEQNGPAVEALKVFQVMLE----SW------------------------ 248
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCI 271
P+ + ++ACA L A+ G+ +HA V + + + DIIL A +DMYAKC I
Sbjct: 249 ---VEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRI 305
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
+ A +FDSMP R+V A TS++SG A + +A +F +M VV ++ Y
Sbjct: 306 KEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
+ L LL R + P +Y +L AC D+ LG +
Sbjct: 366 ENEEALSLFCLLKRESVC-------------PTHYTFANILKACADLADLHLGMQA 408
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/441 (35%), Positives = 242/441 (54%), Gaps = 55/441 (12%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
N+MIR + + N+ + + ++ M + LP++ TF +L+A A VG + H VI+
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
+G+ + L+HLY TC IS A Q+
Sbjct: 118 MGFICDVYTSTALVHLYCTC-------------------------------LSISDASQL 146
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD+MPE+NAV+W+A+I GY F +A++ F M G +P+ +V L+AC+ LGA
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+QG+WIH ++ N + L++ +GTA+IDMYAKCG + VF+ + ++V+ + LISG
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A + Q +A++ F RM +E P+E SM + +G++P
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLLGRAG+LE A ++++ M IEPD + ALL ACRVHG+ LG+ ++ L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E ++ +VLLSNIY+ +W V K+R M +RKVPGCS IE++ VV EFV+
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASN 446
Query: 453 RTNVLMEEIVLLLFGIDKHLK 473
E I L + K LK
Sbjct: 447 DRKPEFEAIYKQLDNLIKKLK 467
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 49/347 (14%)
Query: 29 FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88
+C+ I D S +LF + R WN +I G+ + +KA ++ ML P+
Sbjct: 134 YCTCLSISDAS---QLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
T +L AC+ G H + FV L+ +YA C + K+F+
Sbjct: 191 RTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEE 250
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++V +W LI+GYA +GQ A Q F +M +N
Sbjct: 251 IREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMEN------------------------ 286
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAK 267
F+P+ +G L AC G + +GRW + + G++ I ++D+ +
Sbjct: 287 -------FKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGR 339
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPNES--- 322
G +E A + SM D + +L+ H + + R+ +LE PN
Sbjct: 340 AGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELE---PNNGENY 396
Query: 323 --MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+S IY E G L ++ G+ +KV IE +N V
Sbjct: 397 VLLSNIYSRERRWAEVGKLRGMMNLRGI----RKVPGCSSIEINNVV 439
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
+++G SIAR N+ ++MI Y+ ++ +L F M P+ +
Sbjct: 34 SRNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFP 93
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L A A L G+ IH V + G D+ TA++ +Y C I A +FD MP R
Sbjct: 94 AVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPER 153
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+ + +LI+G ++ + AI+ F M +G P+E
Sbjct: 154 NAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 175/530 (33%), Positives = 282/530 (53%), Gaps = 80/530 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDP----FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIW 56
M Q+KQ+ + T+ T D F GKI+ +S D+++ +R+F ++ ++F+W
Sbjct: 42 MSQLKQLHA-FTLRTTYPDEPATLFLYGKILQL--SSSFSDVNYAFRVFDSIENHSSFMW 98
Query: 57 NTMIRGFAEK-NEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
NT+IR A + +AF LY++ML R + P+ +TF F+L+ACA L G H Q+
Sbjct: 99 NTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQI 158
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
++ G+ +V NGL+H Y +C C+D +AR
Sbjct: 159 VKHGFSGDVYVNNGLIHFYGSCGCLD-------------------------------LAR 187
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++FD+MPE++ VSW++MI+ V+V + AL+ F MQ F P+ + L+ACA LG
Sbjct: 188 KVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQK-SFEPDGYTMQSVLSACAGLG 246
Query: 235 ALDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
+L G W H ++ RN + +D+++ ++I+MY KCG + A VF M D+ ++ +
Sbjct: 247 SLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNA 306
Query: 292 LISGLANHDQSASAIELFMRMQLEG--VVPN------------------------ESMSE 325
+I G A H ++ A+ F M EG V PN + M
Sbjct: 307 MILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVR 366
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDLG 384
YGIEP ++HYGC++DLL RAG + A +V MP++PD + +LL+AC G V+L
Sbjct: 367 EYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELS 426
Query: 385 KETVESLVERSLDHE-------GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+E +++ D++ G +VLLS +YAS +WN V VR+ M D+ +RK PGCS
Sbjct: 427 EEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCS 486
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
IE++G+ EF +G+ ++ ++I L ID L+S+ D N+ + E
Sbjct: 487 SIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRLRSI--VDATNDSSKE 534
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 9/194 (4%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS-------IARQMFDKMP 181
+L L TC+ M ++L ++ + + Y K Q+S A ++FD +
Sbjct: 32 ILSLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 91
Query: 182 EKNAVSWSAMINGYVQ-VDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
++ W+ +I V +EA + M G P+ L ACA++ L +G
Sbjct: 92 NHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEG 151
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ +H + ++G D+ + +I Y CGC++ A VFD MP R + ++ S+I L
Sbjct: 152 KQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRV 211
Query: 300 DQSASAIELFMRMQ 313
+ SA++LF MQ
Sbjct: 212 GEYDSALQLFRDMQ 225
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/450 (34%), Positives = 238/450 (52%), Gaps = 55/450 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L Y +F L++R W MI GFA++ E KAF L+ QM F P TFS IL
Sbjct: 636 GSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSIL 695
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC ++CL G A ++ G+E D V
Sbjct: 696 KACMSSACLDEGKKVIAHILNSGYE-------------------------LDTGVG---- 726
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+LI+ Y+KSG ++ AR++FDKMP ++ +SW+ MI GY Q L AL+ MQ G
Sbjct: 727 --NALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
N V L AC+ AL++G+ +HA + + ++ D+ +G A+I MYAKCG +E A
Sbjct: 785 VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQ 844
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
VFD+ ++V + ++I+ A H ++ A++ F M EG+ P+
Sbjct: 845 EVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
S+ +G+ P ++HYGCLV LLGRAG + A+ ++ +MP PD V L
Sbjct: 905 LVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR+HG+V L + + ++ + + V+VLLSN+YA+ +W+ V K+RR ME +R
Sbjct: 965 LGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIR 1024
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
K PG S IEVD ++ EF++ +R++ EI
Sbjct: 1025 KEPGRSWIEVDNIIHEFIAADRSHPETAEI 1054
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 58/350 (16%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL LF + R WN +I G+A + + +A LYKQM P TF +L
Sbjct: 434 GDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLL 493
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC ++S G + H ++R G +S + N L+++Y C + A+ +F+ + RD+I
Sbjct: 494 SACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDII 553
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A+ G A ++F +++ KE LE
Sbjct: 554 SWNSMIAGHAQHGSYEAAYKLF--------------------LEMKKEGLE--------- 584
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ L C AL+ GR IH + +G++LD+ LG A+I+MY +CG ++ A
Sbjct: 585 --PDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAY 642
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------------- 322
VF S+ +R+V ++T++I G A+ + A ELF +MQ +G P +S
Sbjct: 643 EVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSA 702
Query: 323 ------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
++ Y ++ GV + L+ ++G + A+KV +MP
Sbjct: 703 CLDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMP 750
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 31/286 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD++ + R ++N +I A+ +AF Y QM + N T+ +L
Sbjct: 333 GDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVL 392
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ + L G + H+ + +G S DV
Sbjct: 393 NACSTSKALGAGELIHSHISEVGHSS-------------------------------DVQ 421
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SLI+ YA+ G + AR++F+ MP+++ +SW+A+I GY + + EA++ + MQ G
Sbjct: 422 IGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG 481
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P + L+AC A G+ IH + R+GI+ + L A+++MY +CG I A
Sbjct: 482 VKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQ 541
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+VF+ RD+ ++ S+I+G A H +A +LF+ M+ EG+ P++
Sbjct: 542 NVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDK 587
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 161/367 (43%), Gaps = 55/367 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F + R WN+MI G A+ A+ L+ +M + P+ TF+ +L
Sbjct: 535 GSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVL 594
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C + L +G H +I G + DV
Sbjct: 595 VGCKNPEALELGRQIHMLIIESG-------------------------------LQLDVN 623
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+LIN Y + G + A ++F + +N +SW+AMI G+ ++A E F MQ G
Sbjct: 624 LGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDG 683
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
F+P + L AC LD+G+ + A++ +G ELD +G A+I Y+K G + A
Sbjct: 684 FKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDAR 743
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIY 327
VFD MPNRD+ ++ +I+G A + +A++ +MQ +GVV N+ + S
Sbjct: 744 KVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFS 803
Query: 328 GIEPG---------------VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+E G V+ L+ + + G LE A++V E + A++
Sbjct: 804 ALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF-TEKNVVTWNAMI 862
Query: 373 NACRVHG 379
NA HG
Sbjct: 863 NAYAQHG 869
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 166/385 (43%), Gaps = 60/385 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ + K+I + + +G D F +I + + D +++F+ + R WN++
Sbjct: 98 LAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD---AHQVFLKMPRRDVISWNSL 154
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I +A++ KAF L+++M + F+P+ T+ IL AC + L G H+++I G+
Sbjct: 155 ISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGY 214
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ RD SL+N Y K + ARQ+F
Sbjct: 215 Q-------------------------------RDPRVQNSLLNMYGKCEDLPSARQVFSG 243
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ ++ VS++ M+ Y Q +E + F M G P+ + L A LD+G
Sbjct: 244 IYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEG 303
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH G+ DI +GTA+ M+ +CG + A ++ +RDV Y +LI+ LA H
Sbjct: 304 KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQH 363
Query: 300 DQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQH 335
A E + +M+ +GVV N + +SE+ G VQ
Sbjct: 364 GHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV-GHSSDVQI 422
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMP 360
L+ + R G L A+++ MP
Sbjct: 423 GNSLISMYARCGDLPRARELFNTMP 447
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 141/315 (44%), Gaps = 33/315 (10%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I S + +G DP ++ + DL ++F + R +NTM+ +A
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLNMYGKCE--DLPSARQVFSGIYRRDVVSYNTMLGLYA 260
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+K + L+ QM P+ T+ +L A S L G H + G
Sbjct: 261 QKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEG------ 314
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+N D+ T+L + + G ++ A+Q + +++
Sbjct: 315 -------------------------LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRD 349
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V ++A+I Q ++EA E + M+ G N + L AC+ AL G IH+
Sbjct: 350 VVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHS 409
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
++ G D+ +G ++I MYA+CG + A +F++MP RD+ ++ ++I+G A +
Sbjct: 410 HISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGE 469
Query: 305 AIELFMRMQLEGVVP 319
A++L+ +MQ EGV P
Sbjct: 470 AMKLYKQMQSEGVKP 484
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 15/256 (5%)
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
++ + V D+ LIN Y K +S A Q+F KMP ++ +SW+++I+ Y Q K+
Sbjct: 107 QMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKK 166
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
A + F MQ GF P+ + LTAC L+ G+ IH+ + G + D + ++++
Sbjct: 167 AFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLN 226
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM 323
MY KC + +A VF + RDV +Y +++ A I LF +M EG+ P++
Sbjct: 227 MYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVT 286
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR---EMPIEPDNYVLGALLNACRVHGD 380
Y L+D ML+ K++ + + D V AL GD
Sbjct: 287 ------------YINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGD 334
Query: 381 VDLGKETVESLVERSL 396
V K+ +E+ +R +
Sbjct: 335 VAGAKQALEAFADRDV 350
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 34/279 (12%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K++ +H+ SG D +I S S G ++ ++F + R WN MI G+A
Sbjct: 708 KKVIAHILNSGYELDTGVGNALISAYSKS--GSMTDARKVFDKMPNRDIMSWNKMIAGYA 765
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ A QM + N ++F IL AC+ S L G HA++++ +
Sbjct: 766 QNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVR 825
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V L+ +YA C ++ A+++FD ++V++W ++IN YA+ G
Sbjct: 826 VGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHG---------------- 869
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
L +AL+ FN M G +P+ + L+AC G + +G I +
Sbjct: 870 ---------------LASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFS 914
Query: 245 YVD-RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
++ ++G+ I ++ + + G + A ++ + MP
Sbjct: 915 SLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMP 953
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 217 RP---NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
RP N A V + C +L + + IHA + G+ DI L +I+MY KC +
Sbjct: 76 RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD 135
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
A VF MP RDV ++ SLIS A A +LF MQ G +P++
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSK 183
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/480 (32%), Positives = 261/480 (54%), Gaps = 25/480 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G LS L R W ++I ++ + +A +K ML P++ T
Sbjct: 185 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 244
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVN 151
+L AC+ L +G H+ V G + ++ L+ +YA C AR++FD +
Sbjct: 245 GVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRG 304
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
R SW ++I+GY K G + +AR +FD+M ++ +++++MI GY+ +EAL F M
Sbjct: 305 RRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNM 364
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ R ++ +V L+ACA LGAL QGR +HA ++ +E DI +GTA++DMY KCG +
Sbjct: 365 RRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 424
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
A VF M RDV A+T++I+GLA + + +E F +M+ +G PN
Sbjct: 425 NEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTAC 484
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+ M +Y I P ++HYGC++DLLGR+G+L+ A +V+ MP++P++ +
Sbjct: 485 SHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVI 544
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
++L+ACRVH +DL + E L++ D + V+V L NI + +W K+R ME+
Sbjct: 545 WASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEE 604
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
+V+K G S + V G V +FV ++++ + EI+ +L I LKS + ++V +
Sbjct: 605 RQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVTVD 664
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 196/398 (49%), Gaps = 29/398 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFA----VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIW 56
++Q ++ +HLT SG L P + + ++ SD L + LF + +TF++
Sbjct: 12 VRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPA-STFLF 70
Query: 57 NTMIRGF----AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC-- 110
+T +R +P F L+++M R+ P+ +TF F+ + C+ +S L+C
Sbjct: 71 DTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFK-CSSSS-RPRALLCTM 128
Query: 111 -HAQVIRLGWESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HA +R S FV N L+H+Y R+ FD +D +SWT +I+G AK G
Sbjct: 129 LHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMG 188
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+S AR + + P ++ +SW+++I Y + D KEA++ F M G P+ ++G L+
Sbjct: 189 MLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLS 248
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVF 287
AC+ L L+ G +H+ V G+ + L A+IDMYAKCG A VFD++ R
Sbjct: 249 ACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQ 308
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
++ ++I G H A LF +M++ ++ SM G H G L R
Sbjct: 309 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMIT------GYIHSGQL-----REA 357
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+L +R + DN+ + +LL+AC G + G+
Sbjct: 358 LLLFMN--MRRHDLRVDNFTVVSLLSACASLGALPQGR 393
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 195/464 (42%), Gaps = 64/464 (13%)
Query: 8 QSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
Q H V W P F ++ SA IGD + + WN+++ +A
Sbjct: 916 QLHGVVLKAGWIPSNIFLSNSLVDLYSA--IGDSVDTVKALNDILSEDVISWNSILSMYA 973
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE-SYD 123
++ +A KQML +P+ +F +L T +G+ H V +LG+ S
Sbjct: 974 DRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSV 1033
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
V L+ +Y C C FD S+ +F+++P
Sbjct: 1034 HVQTTLIDMYGKCCC-------FDHSL------------------------AIFNEIPSI 1062
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA--LDQGRW 241
+++I ++ ++F ALE + M + G P+ + A + + L +
Sbjct: 1063 ALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQM 1122
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H+ + + G E+D+ + +++I YA G + ++ +F+ + + +V +T++IS A +
Sbjct: 1123 LHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGD 1182
Query: 302 SASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYG 337
A A+ELF +M G+ P+ E M ++P +H+
Sbjct: 1183 GARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFA 1242
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+V+LL R G ++ A +++ + P+ +LL +C+ HG+ LGK L++
Sbjct: 1243 CMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRK 1302
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
+ +SN + +++ EV+K G SLIEV
Sbjct: 1303 DPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEV 1345
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 157/390 (40%), Gaps = 62/390 (15%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC-ADTS 102
LF L + T + N ++RG + + M R N ++ + ++ C +
Sbjct: 850 LFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 909
Query: 103 CLFVGLICHAQVIRLGW-ESYDFVLNGLLHLY-ATCNCMDPARKLFDMSVNRDVISWTSL 160
L G H V++ GW S F+ N L+ LY A + +D + L D+ ++ DVISW S+
Sbjct: 910 WLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI-LSEDVISWNSI 968
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
++ YA G + KEA+ + M G P+
Sbjct: 969 LSMYADRGHM-------------------------------KEAVYYLKQMLWHGKMPSI 997
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFD 279
V L G G IH V + G + + T +IDMY KC C + + ++F+
Sbjct: 998 RSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN 1057
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------SMSEIYGI 329
+P+ + SLI+ + +A+E+ M +EGV P++ S+S +
Sbjct: 1058 EIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSL 1117
Query: 330 EPGVQHYGCLVDL---------------LGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
+ CLV L AG L ++ ++ E ++P+ A+++A
Sbjct: 1118 TSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSS-HLIFEGLLDPNVICFTAIISA 1176
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVL 404
C +GD E + +V L + V L
Sbjct: 1177 CARYGDGARAMELFDQMVSSGLKPDNVTFL 1206
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 262/510 (51%), Gaps = 61/510 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ + D++ ++F + R I N MIR + + ++ M + P++YTF
Sbjct: 85 ASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFP 144
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L+AC+ + + +G H ++G S FV NGL+ +Y C + AR + D R
Sbjct: 145 CVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRR 204
Query: 153 DVISWTSLINGYAKSGQISIA-------------------------------------RQ 175
DV+SW SL+ GYA++ + A +
Sbjct: 205 DVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKD 264
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
MF KM +K+ VSW+ MI Y++ + EA+E ++ M+ GF P+ I L AC A
Sbjct: 265 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L G+ IH Y++R + +++L A+IDMYAKCGC+E A VF++M +RDV ++T++IS
Sbjct: 325 LSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
+ A+ LF ++Q G+VP+ + M++ Y I P
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++H C+VDLLGRAG ++ A + +++M +EP+ V GALL ACRVH D D+G + L
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+ + + G +VLLSNIYA +W V +R M+ ++K PG S +EV+ ++ F+ G
Sbjct: 505 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDDG 481
+R++ +EI L + K +K L + D
Sbjct: 565 DRSHPQSDEIYRELDVLVKKMKELGYVPDS 594
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
L+ YA ++ AR++FD++PE+N + + MI YV + E ++ F M C RP+
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
H L AC+ G + GR IH + G+ + +G ++ MY KCG + A V D
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
M RDV ++ SL+ G A + + A+E+ M+
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 262/510 (51%), Gaps = 61/510 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ + D++ ++F + R I N MIR + + ++ M + P++YTF
Sbjct: 85 ASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFP 144
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L+AC+ + + +G H ++G S FV NGL+ +Y C + AR + D R
Sbjct: 145 CVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRR 204
Query: 153 DVISWTSLINGYAKSGQISIA-------------------------------------RQ 175
DV+SW SL+ GYA++ + A +
Sbjct: 205 DVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKD 264
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
MF KM +K+ VSW+ MI Y++ + EA+E ++ M+ GF P+ I L AC A
Sbjct: 265 MFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L G+ IH Y++R + +++L A+IDMYAKCGC+E A VF++M +RDV ++T++IS
Sbjct: 325 LSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
+ A+ LF ++Q G+VP+ + M++ Y I P
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++H C+VDLLGRAG ++ A + +++M +EP+ V GALL ACRVH D D+G + L
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+ + + G +VLLSNIYA +W V +R M+ ++K PG S +EV+ ++ F+ G
Sbjct: 505 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVG 564
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDDG 481
+R++ +EI L + K +K L + D
Sbjct: 565 DRSHPQSDEIYRELDVLVKKMKELGYVPDS 594
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
L+ YA ++ AR++FD++PE+N + + MI YV + E ++ F M C RP+
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
H L AC+ G + GR IH + G+ + +G ++ MY KCG + A V D
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
M RDV ++ SL+ G A + + A+E+ M+
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 162/520 (31%), Positives = 269/520 (51%), Gaps = 76/520 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++K++ + + + D + +++ FC+ SD G+L++ +F + + +IWN+MI
Sbjct: 18 MAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G++ P +A +Y++M + + P+++TF F+L+AC+ + +G H +++ G+E
Sbjct: 78 KGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFE 137
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ LL +YA C M+ A K+FD +V++WTSLI G + S A +++ M
Sbjct: 138 VDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDM 197
Query: 181 ------PEK----------------NAVSWSAMINGYVQVDLFK---------------- 202
P + NA W G + +D F+
Sbjct: 198 ELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDM 257
Query: 203 -------------EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
EAL+ F+ M++ GF P+ A + + ACA LGAL G+ +HAYV +
Sbjct: 258 YAKCAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKT 317
Query: 250 GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
+ D +GTA++DMYAK G E A VF + +DV A+TSLI GLA H A+ F
Sbjct: 318 NLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFF 377
Query: 310 MRMQLE-GVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLG 344
+MQ + ++P+E SM ++GIEP QHYGC+VDLL
Sbjct: 378 KKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLS 437
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404
RAG L A+++V +MP+EP+ + ALLN C+++ ++D+ + E +D GV+VL
Sbjct: 438 RAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVL 497
Query: 405 LSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
LSNIYA +W V+ R M++ +++K G S +E+ V
Sbjct: 498 LSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEMKMV 537
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 6/201 (2%)
Query: 127 NGLLHLYATCNCMDPARKLFDM----SVNRDVISWTSLIN--GYAKSGQISIARQMFDKM 180
N +L L C M ++L + SV +DVI + L++ Y+ SG ++ A+ +F+++
Sbjct: 6 NSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQI 65
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ W++MI GY + EAL + M+ G+ P+H L AC+ + + G+
Sbjct: 66 DRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQ 125
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H + + G E+D+ TA++ MYA CG +E A VFD +P +V A+TSLI+G ++D
Sbjct: 126 CVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISND 185
Query: 301 QSASAIELFMRMQLEGVVPNE 321
+ A+ ++ M+L V PNE
Sbjct: 186 CPSEAVRVYKDMELWSVAPNE 206
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 170/523 (32%), Positives = 258/523 (49%), Gaps = 62/523 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+ QI + + + ++I S+S ++H +F + + F +N +IRG
Sbjct: 96 QLHQIHAQIIIHNLSSSSLITTQLIS--SSSLRKSINHSLAVFNHHKPKNLFTFNALIRG 153
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ A ++ MLRS P+ T+ F+L++ A +G+ H ++R G E
Sbjct: 154 LTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELD 213
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNR------------------------------ 152
FV L+ +Y + A K+FD S R
Sbjct: 214 SFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLF 273
Query: 153 ------DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
+ +SW++LI+G+AK+G + A ++FD+MPEKN VSW+ M++G+ + ++AL
Sbjct: 274 KAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALS 333
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F+ M G RPN IV AL+ACA +G L+ G IH Y+ NG+ L LGTA++DMYA
Sbjct: 334 MFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYA 393
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
KCG IE+A VF + + +T +I G A H S AI F +M G+ P+E
Sbjct: 394 KCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLA 453
Query: 322 -------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
SM Y IEP ++HY +VD+LGR+G L+ A + + MP+
Sbjct: 454 LLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMN 513
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
PD + GAL ACR H + K + L++ H G ++ LSN YA+ QW E+VR
Sbjct: 514 PDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVR 573
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
M++ V K G S IEV+G V FVSG+ + + I L L
Sbjct: 574 VLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKL 616
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 232/391 (59%), Gaps = 27/391 (6%)
Query: 121 SYDFVLNGLLHLYATCNCMDPARK-LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
++ V N LL LY + +D AR+ L+ DV+SW ++++GY K G + AR++F +
Sbjct: 111 AHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFAR 170
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE+N VSWSAM++ V+ F EAL F+ M FRP+ +V L ACA LGA+++G
Sbjct: 171 MPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERG 230
Query: 240 RWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
RW+H Y++ G +++L TA++DMY KCGC+E A VFD + RDV + ++I GL
Sbjct: 231 RWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGL 290
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESM-----------------------SEIYGIEPGV 333
A + A+ELF RM +G +PNES + YGI+P
Sbjct: 291 AMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQR 350
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCL DLLGRAG +E A+ ++ +MP+EP GAL+++C++H D+++G+ + L+E
Sbjct: 351 EHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIE 410
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G +V+L N+YA +W +R+ MED +K G S IE++G+V EF+SG+
Sbjct: 411 LEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDT 470
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ L +I LL I++ L+ + + D ++V
Sbjct: 471 RHPLTRKIYALLEDIERRLQLIGYVKDTSQV 501
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL +F + R W+ M+ E +A ++ +M+R +F P+ +L
Sbjct: 159 GDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVL 218
Query: 96 RACADTSCLFVGLICHA--QVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNR 152
+ACA + G H + G + +L L+ +Y C CM+ A ++FD R
Sbjct: 219 KACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRR 278
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV+ W ++I G A +NGY + ALE F M
Sbjct: 279 DVVLWNAMIGGLA--------------------------MNGYGE-----RALELFRRML 307
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
GF PN + + L AC G +D+G+ + + GI+ + D+ + G +E
Sbjct: 308 QKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVE 367
Query: 273 TACSVFDSMP 282
A ++ MP
Sbjct: 368 EAEALLLDMP 377
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +++F + R +WN MI G A +A L+++ML+ F+PN TF +L
Sbjct: 263 GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVL 322
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK-LFDMSVNRDV 154
AC T + G + G + L L ++ A L DM +
Sbjct: 323 CACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPE 182
W +L++ I++ ++ ++ E
Sbjct: 383 SQWGALMSSCQMHNDINVGERVGKRLIE 410
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/503 (30%), Positives = 270/503 (53%), Gaps = 58/503 (11%)
Query: 29 FCSAS-DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLP 86
F SAS + + + F ++ F++N MI+GF P +A Y ML S+ LP
Sbjct: 174 FISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLP 233
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
+YTFS +++AC + +G + H + + G+ES+ FV L+ Y+ + ARK+F
Sbjct: 234 TSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVF 293
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV---------- 196
D RD +WT++++ A+ G + AR++F++MPE+N +W+ MI+GY
Sbjct: 294 DEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAEL 353
Query: 197 ---------------------QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
Q +++AL ++ M+L G P+ + +ACA +GA
Sbjct: 354 LFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGA 413
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ G+ IH YV G+ LD+ +G+A++DMYAKCG ++ + +F + +++++ + ++I G
Sbjct: 414 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 473
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEP 331
LA H + A+ +F M+ E ++PN SM+ Y I P
Sbjct: 474 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 533
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++HYGC+VD+L ++G L A ++++ M EP++ + GALLN C++HG+ ++ ++ VE L
Sbjct: 534 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 593
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV-RKVPGCSLIEVDGVVCEFVS 450
+ + G + LL ++YA + W V +R M++ V +K PG S IE++G + +F +
Sbjct: 594 MILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSA 653
Query: 451 GERTNVLMEEIVLLLFGIDKHLK 473
++ ++I +L +D LK
Sbjct: 654 SADSHPDSDKIYFVLTELDGQLK 676
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/486 (30%), Positives = 263/486 (54%), Gaps = 57/486 (11%)
Query: 45 FVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSC 103
F ++ F++N MI+GF P +A Y ML S+ LP +YTFS +++AC
Sbjct: 94 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 153
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
+ +G + H + + G+ES+ FV L+ Y+ + ARK+FD RD +WT++++
Sbjct: 154 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSA 213
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYV--------------------------- 196
A+ G + AR++F++MPE+N +W+ MI+GY
Sbjct: 214 LARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMI 273
Query: 197 ----QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252
Q +++AL ++ M+L G P+ + +ACA +GAL+ G+ IH YV G+
Sbjct: 274 TCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLN 333
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312
LD+ +G+A++DMYAKCG ++ + +F + +++++ + ++I GLA H + A+ +F M
Sbjct: 334 LDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIM 393
Query: 313 QLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+ E ++PN SM+ Y I P ++HYGC+VD+L ++G
Sbjct: 394 EREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGY 453
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408
L A ++++ M EP++ + GALLN C++HG+ ++ ++ VE L+ + G + LL ++
Sbjct: 454 LNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSM 513
Query: 409 YASTEQWNGVEKVRRGMEDNEV-RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
YA + W V +R M++ V +K PG S IE++G + +F + ++ ++I +L
Sbjct: 514 YAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTE 573
Query: 468 IDKHLK 473
+D LK
Sbjct: 574 LDGQLK 579
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 137/333 (41%), Gaps = 73/333 (21%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE-----------KN 67
D FA ++ + + +GD+ +LF + R T WNTMI G+
Sbjct: 203 DAFAWTAMLS--ALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQ 260
Query: 68 EPIK--------------------AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
P K A A+Y +M + +P+ T S + ACA
Sbjct: 261 MPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACA-------- 312
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
H + LG E + +V++ +N DV ++L++ YAK
Sbjct: 313 ---HIGALELGKEIHHYVMS--------------------QGLNLDVYIGSALVDMYAKC 349
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G + ++ +F K+ +KN W+A+I G ++AL F M+ PN + L
Sbjct: 350 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 409
Query: 228 TACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSM---PN 283
+AC G +D+GR + R+ I DI ++DM +K G + A + SM PN
Sbjct: 410 SACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPN 469
Query: 284 RDVFAYTSLISGLANH---DQSASAIELFMRMQ 313
++ +L++G H + + A+E M ++
Sbjct: 470 SIIWG--ALLNGCKLHGNCEIAEDAVEQLMILE 500
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 166/444 (37%), Positives = 244/444 (54%), Gaps = 37/444 (8%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQML--RSDFLPNNYTFSFILRACADTSCLFVGLI 109
T + + I + + A AL +ML R LP +T S L AC CL VG
Sbjct: 86 TAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRA 142
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSG 168
H ++L +V LL +YA AR LFD M + V+S T++++ YAK G
Sbjct: 143 LHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMG 202
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ AR +FD +P K+ V W+AM++GY Q EAL F M G P+ +V AL+
Sbjct: 203 QLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALS 262
Query: 229 ACAFLGALDQGRWIHAYVDRNG----IELDIILGTAIIDMYAKCGCIETACSVFDSMP-- 282
A A LG + GRW+H++V G + L+ +GTA++DMY KCG +E A +VF +
Sbjct: 263 AVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGG 322
Query: 283 -NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------------- 321
+RDV A+ ++I+G A H +S A+E F +++ +G+ P +
Sbjct: 323 GDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGR 382
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
+M E YGI P V+HYGC+VDLLGRAG +E A +V+ M +PD + +LL ACR+
Sbjct: 383 ALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRL 442
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H ++ LG+ + LV L + G +VLLSN+YA+ +W V +VR M + V+K PGCS
Sbjct: 443 HKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCS 502
Query: 438 LIEVDGVVCEFVSGERTNVLMEEI 461
+EV V EFV+G+R++ EI
Sbjct: 503 AVEVGRRVVEFVAGDRSHPRSAEI 526
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 120/298 (40%), Gaps = 40/298 (13%)
Query: 15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFA 74
G DP V + +G L LF L + WN M+ G+ + P +A
Sbjct: 181 GMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALR 240
Query: 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY----DFVLNGLL 130
L++QMLRS P+ + L A A G H+ V G + V L+
Sbjct: 241 LFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALV 300
Query: 131 HLYATCNCMDPARKLF-DM--SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
+Y C ++ A +F D+ +RDV++W ++INGYA G+
Sbjct: 301 DMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGR------------------ 342
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
+EALE F ++ G P +G L AC+ G +D+GR + A ++
Sbjct: 343 -------------SREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAME 389
Query: 248 RN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANHDQSA 303
GI + ++D+ + G +E A + SM + D + SL+ H A
Sbjct: 390 EEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLA 447
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 66/294 (22%)
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
SV++D L YA SG++ +A + + P+ AV +++ I+ + L + AL
Sbjct: 51 SVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALL 110
Query: 209 NYMQLC--GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR------------------ 248
+ M L G P + +L AC G L GR +H Y +
Sbjct: 111 SEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRALHGYAVKLALSGEPYVATALLGMYA 167
Query: 249 ------------NGIELD--IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+G+ D ++ TA++ YAK G ++ A +FD++P +D+ + +++
Sbjct: 168 RAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMD 227
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG------VQHYG--- 337
G H + + A+ LF +M GV P+E +++++ E G V + G
Sbjct: 228 GYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRA 287
Query: 338 ----------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG--ALLNACRVHG 379
LVD+ + G LE A V R++ D V+ A++N +HG
Sbjct: 288 RVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHG 341
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 175/506 (34%), Positives = 272/506 (53%), Gaps = 33/506 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +++Q S L G P +++ F + + RL ++N +
Sbjct: 23 IAELRQHHSQLIRLGVASHPAHARRLLSFLARDPDSHFPYASRLLAHHPAPHPALFNPLF 82
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
++ A L ML P+++TF IL L + HA +++LG+
Sbjct: 83 SALPTRH----AARLLALMLSLPLHPDHFTFPRIL---PGAQPLHLVAQLHALLLKLGFH 135
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--DVISWTSLINGYAKSGQISIARQMFD 178
++ LN LL Y D A ++F DV+SWT+++ G K G++ AR++FD
Sbjct: 136 AHTQSLNALLAAYLANARPDLASRVFRGGGGDALDVVSWTTMVGGLVKLGRVDDARELFD 195
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
MPE+N VSW+AM++GYV+ F +ALE F+ M+ G N A+ AC GAL +
Sbjct: 196 GMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMRARGVDGNAFVAATAVVACTGAGALAR 255
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GR +H +V+R+GIE+D L TA++DMY KCGC+E A VF+++P R + ++ +I G A
Sbjct: 256 GREVHRWVERSGIEMDDKLATAVVDMYCKCGCVEEAWRVFEALPARGLTSWNCMIGGFAV 315
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H + A+ LF M+ EGV P++ +S+ YGI P ++
Sbjct: 316 HGRGEDALNLFGLMEREGVAPDDVTLVNVLTACAHAGMVSEGRHYFNYISQRYGIVPKME 375
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDL GRAG LE AKKV+++MP+EPD VLGAL A ++HGDVDLG+ ++E
Sbjct: 376 HYGCMVDLYGRAGQLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIEL 435
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ G +VLL+N+ A+ +W V +VRR M++ V K G S+IEV G VCEF G
Sbjct: 436 DPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLC 495
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDD 480
+ EE+ + + + +++ + D
Sbjct: 496 HPQAEEVYAMARDMMRKIRAEGYVPD 521
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 255/467 (54%), Gaps = 25/467 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G LS L R W ++I ++ + +A +K ML P++ T
Sbjct: 123 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 182
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVN 151
+L AC+ L +G H V G + ++ L+ +YA C AR++FD +
Sbjct: 183 GVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRG 242
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
R SW ++I+GY K G + +AR +FD+M ++ +++++MI GY+ +EAL F M
Sbjct: 243 RRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNM 302
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ R ++ +V L+ACA LGAL QGR +HA ++ +E DI +GTA++DMY KCG +
Sbjct: 303 RRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 362
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
A VF M RDV A+T++I+GLA + + +E F +M+ +G PN
Sbjct: 363 NEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTAC 422
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+ M +Y I P ++HYGC++DLLGR+G+L+ A +V+ MP++P++ +
Sbjct: 423 SHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVI 482
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
++L+ACRVH +DL + E L++ D + V+V L NI + +W K+R ME+
Sbjct: 483 WASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEE 542
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
+V+K G S + V G V +FV ++++ + EI+ +L I LKS
Sbjct: 543 RQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKS 589
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 24/343 (6%)
Query: 52 TTFIWNTMIRGF----AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
+TF+++T +R +P F L+++M R+ P+ +TF F+ + C+ +S
Sbjct: 4 STFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFK-CSSSS-RPRA 61
Query: 108 LIC---HAQVIRLGWESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L+C HA +R S FV N L+H+Y R+ FD +D +SWT +I+G
Sbjct: 62 LLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISG 121
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
AK G +S AR + + P ++ +SW+++I Y + D KEA++ F M G P+ +
Sbjct: 122 LAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTV 181
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-P 282
+G L+AC+ L L+ G +H V G+ + L A+IDMYAKCG A VFD++
Sbjct: 182 IGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGR 241
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342
R ++ ++I G H A LF +M++ ++ SM G H G L
Sbjct: 242 GRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMIT------GYIHSGQL--- 292
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
R +L +R + DN+ + +LL+AC G + G+
Sbjct: 293 --REALLLFMN--MRRHDLRVDNFTVVSLLSACASLGALPQGR 331
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 194/464 (41%), Gaps = 64/464 (13%)
Query: 8 QSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
Q H V W P F ++ SA IGD + + WN+++ +A
Sbjct: 854 QLHGVVLKAGWIPSNIFLSNSLVDLYSA--IGDSVDTVKALNDILSEDVISWNSILSMYA 911
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE-SYD 123
++ +A KQML +P+ +F +L T +G+ H V +LG+ S
Sbjct: 912 DRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSV 971
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
V L+ +Y C C FD S+ +F+++P
Sbjct: 972 HVQTTLIDMYGKCCC-------FDHSL------------------------AIFNEIPSI 1000
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA--LDQGRW 241
+++I + ++F ALE + M + G P+ + A + + L +
Sbjct: 1001 ALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQM 1060
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H+ + + G E+D+ + +++I YA G + ++ +F+ + + +V +T++IS A +
Sbjct: 1061 LHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGD 1120
Query: 302 SASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYG 337
A A+ELF +M G+ P+ E M ++P +H+
Sbjct: 1121 GARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFA 1180
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+V+LL R G ++ A +++ + P+ +LL +C+ HG+ LGK L++
Sbjct: 1181 CMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRK 1240
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
+ +SN + +++ EV+K G SLIEV
Sbjct: 1241 DPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEV 1283
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 157/390 (40%), Gaps = 62/390 (15%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC-ADTS 102
LF L + T + N ++RG + + M R N ++ + ++ C +
Sbjct: 788 LFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGE 847
Query: 103 CLFVGLICHAQVIRLGW-ESYDFVLNGLLHLY-ATCNCMDPARKLFDMSVNRDVISWTSL 160
L G H V++ GW S F+ N L+ LY A + +D + L D+ ++ DVISW S+
Sbjct: 848 WLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDI-LSEDVISWNSI 906
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
++ YA G + KEA+ + M G P+
Sbjct: 907 LSMYADRGHM-------------------------------KEAVYYLKQMLWHGKMPSV 935
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFD 279
V L G G IH V + G + + T +IDMY KC C + + ++F+
Sbjct: 936 RSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN 995
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------SMSEIYGI 329
+P+ + SLI+ + +A+E+ M +EGV P++ S+S +
Sbjct: 996 EIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSL 1055
Query: 330 EPGVQHYGCLVDL---------------LGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
+ CLV L AG L ++ ++ E ++P+ A+++A
Sbjct: 1056 TSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSS-HLIFEGLLDPNVICFTAIISA 1114
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVL 404
C +GD E + +V L + V L
Sbjct: 1115 CARYGDGARAMELFDQMVSSGLKPDNVTFL 1144
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 251/489 (51%), Gaps = 57/489 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSAS-DIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ +I+Q + + +G D F+ K++ F + + + +S+ + + + F N++
Sbjct: 52 LTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSV 111
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR +A + P A ++++ML P+ Y+F+F+L+ACA G H I+ G
Sbjct: 112 IRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGL 171
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL------------------- 160
+ FV N L+++Y + ARK+ D RD +SW SL
Sbjct: 172 VTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDE 231
Query: 161 ------------INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
I+GYA +G + A+++FD MP ++ VSW+AM+ Y V + E LE F
Sbjct: 232 MEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVF 291
Query: 209 NYM-QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
N M +P+ +V L+ACA LG+L QG W+H Y+D++GIE++ L TA++DMY+K
Sbjct: 292 NKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK 351
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------- 320
CG I+ A VF + RDV + S+IS L+ H A+E+F M EG PN
Sbjct: 352 CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411
Query: 321 -----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
E MS +Y +EP ++HYGC+VDLLGR G +E A+++V E+P +
Sbjct: 412 LSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADE 471
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
+ +L +LL AC+ G ++ + L+E +L + +SN+YAS +W V RR
Sbjct: 472 ASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRR 531
Query: 424 GMEDNEVRK 432
M V +
Sbjct: 532 NMRAERVNR 540
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 232/391 (59%), Gaps = 27/391 (6%)
Query: 121 SYDFVLNGLLHLYATCNCMDPARK-LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
++ V N LL LY + +D AR+ L+ DV+SW ++++GY K G + AR++F +
Sbjct: 111 AHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFAR 170
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE+N VSWSAM++ V+ F EAL F+ M FRP+ +V L ACA LGA+++G
Sbjct: 171 MPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERG 230
Query: 240 RWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
RW+H Y++ G +++L TA++DMY KCGC+E A VFD + RDV + ++I GL
Sbjct: 231 RWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGL 290
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESM-----------------------SEIYGIEPGV 333
A + A+ELF RM +G +PNES + YGI+P
Sbjct: 291 AMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQR 350
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCL DLLGRAG +E A+ ++ +MP+EP GAL+++C++H D+++G+ + L+E
Sbjct: 351 EHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIE 410
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G +V+L N+YA +W +R+ MED +K G S IE++G+V EF+SG+
Sbjct: 411 LEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDT 470
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ L +I LL I++ L+ + + D ++V
Sbjct: 471 RHPLTRKIYALLEDIERRLQLIGYVKDTSQV 501
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL +F + R W+ M+ E +A ++ +M+R +F P+ +L
Sbjct: 159 GDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVL 218
Query: 96 RACADTSCLFVGLICHA--QVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNR 152
+ACA + G H + G + +L L+ +Y C CM+ A ++FD R
Sbjct: 219 KACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRR 278
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV+ W ++I G A +NGY + ALE F M
Sbjct: 279 DVVLWNAMIGGLA--------------------------MNGYGE-----RALELFRRML 307
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
GF PN + + L AC G +D+G+ + + GI+ + D+ + G +E
Sbjct: 308 QKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVE 367
Query: 273 TACSVFDSMP 282
A ++ MP
Sbjct: 368 EAEALLLDMP 377
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +++F + R +WN MI G A +A L+++ML+ F+PN TF +L
Sbjct: 263 GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVL 322
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK-LFDMSVNRDV 154
AC T + G + G + L L ++ A L DM +
Sbjct: 323 CACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPE 182
W +L++ I++ ++ ++ E
Sbjct: 383 SQWGALMSSCQMHNDINVGERVGKRLIE 410
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 168/501 (33%), Positives = 274/501 (54%), Gaps = 60/501 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGK--IIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWNTM 59
+++QI + G +GK I S +S+ +++F ++ FIWNT+
Sbjct: 32 KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
IRG+AE I AF+LY++M S + P+ +T+ F+++A + + +G H+ VIR G
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ S +V N LLHLYA C + A K+FD +D+++W S+ING+A++G+
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK--------- 202
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
PE EAL + M G +P+ IV L+ACA +GAL
Sbjct: 203 --PE--------------------EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+ +H Y+ + G+ ++ ++D+YA+CG +E A ++FD M +++ ++TSLI GLA
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 299 HDQSASAIELFMRMQ-LEGVVPNE------------------------SMSEIYGIEPGV 333
+ AIELF M+ EG++P E M E Y IEP +
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 360
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+H+GC+VDLL RAG ++ A + ++ MP++P+ + LL AC VHGD DL + +++
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 420
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+H G +VLLSN+YAS ++W+ V+K+R+ M + V+KVPG SL+EV V EF+ G++
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 480
Query: 454 TNVLMEEIVLLLFGIDKHLKS 474
++ + I L + L+S
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRS 501
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 164/508 (32%), Positives = 265/508 (52%), Gaps = 57/508 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ QIQ++ + D K+I FC+ S +S+ LF + I+N++
Sbjct: 45 RELMQIQAY-AIKSHQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIA 103
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG++ P++ F L+ ++L D LP+NYTF +L+ACA L G H ++LG
Sbjct: 104 RGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLG-- 161
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V+ +V +LIN Y + + AR +FD++
Sbjct: 162 -----------------------------VDDNVYVCPTLINMYTECEDVDAARCVFDRI 192
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E V ++AMI GY + + EAL F MQ +PN ++ L++CA LG+LD G+
Sbjct: 193 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGK 252
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH Y ++G + + TA+IDM+AKCG ++ A S+F++M +D A++++I ANH
Sbjct: 253 WIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHG 312
Query: 301 QSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHY 336
Q+ +++ +F RM+ E V P+E M +GI P ++HY
Sbjct: 313 QAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHY 372
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
G +VDLLGRAG LE A + + ++PI P + LL AC H +++L ++ E ++E
Sbjct: 373 GSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDD 432
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
H G +V+LSN+YA ++W V+ +R+ M+D + KVPGCS IEV+ VV EF SG+
Sbjct: 433 SHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKS 492
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ L + K LK + D + V
Sbjct: 493 ATTKLHRALDEMVKELKLAGYVPDTSMV 520
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 164/508 (32%), Positives = 262/508 (51%), Gaps = 58/508 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+KQ +QI + +G + D ++ + G L +F + + WN MI
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRVRTALLSM--YAKCGSLMDARNVFERISKQNVVAWNAMI 480
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + + A A ++ +L+ P++ TF+ IL C L +G + +IR G+E
Sbjct: 481 TAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S + N L+ ++ C G + A +F+ M
Sbjct: 541 SDLHIRNALVSMFVNC-------------------------------GDLMSAMNLFNDM 569
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE++ VSW+ +I G+VQ + A ++F MQ G +P+ G L ACA AL +GR
Sbjct: 570 PERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGR 629
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+HA + ++ D+++GT +I MY KCG I+ A VF ++P ++V+++TS+I+G A H
Sbjct: 630 RLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHG 689
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+ELF +MQ EGV P+ ESM + + IEP ++HY
Sbjct: 690 RGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHY 748
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDL GRAG+L A + + +M ++PD+ + GALL AC+VH DV+L ++ + +E
Sbjct: 749 GCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDP 808
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ +GV+V+LSNIYA+ W V K+R+ M D V K PG S IEVDG V F S ++T+
Sbjct: 809 NDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHP 868
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+EEI L + +K L + D V
Sbjct: 869 QIEEIHAELGRLHMEMKKLGYVPDTRYV 896
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 158/317 (49%), Gaps = 33/317 (10%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
++I +H+ S D F +I + G+ + ++F + + + WN ++ G+
Sbjct: 124 ERIHNHIKFSKIQPDIFMWNMLISM--YAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYV 181
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +AF L++QM++ P+ YTF ++L ACAD + G + ++ GW++
Sbjct: 182 QHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDT--- 238
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
D+ T+LIN + K G + A ++F+ +P ++
Sbjct: 239 ----------------------------DLFVGTALINMHIKCGGVDDALKVFNNLPRRD 270
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
++W++MI G + FK+A F M+ G +P+ V L AC AL+QG+ +HA
Sbjct: 271 LITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHA 330
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ G++ +I +GTA++ MY KCG +E A VF+ + R+V ++T++I+G A H +
Sbjct: 331 RMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEE 390
Query: 305 AIELFMRMQLEGVVPNE 321
A F +M G+ PN
Sbjct: 391 AFLFFNKMIESGIEPNR 407
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 31/286 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F ++ R W MI GFA+ +AF + +M+ S PN TF IL
Sbjct: 355 GSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSIL 414
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ S L G H ++I+ G+ + D V LL +YA C + AR +F+ ++V+
Sbjct: 415 GACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVV 474
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W +AMI YVQ + + A+ F + G
Sbjct: 475 AW-------------------------------NAMITAYVQHEKYDNAVATFQALLKEG 503
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ + L C AL+ G+W+ + + R G E D+ + A++ M+ CG + +A
Sbjct: 504 IKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAM 563
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
++F+ MP RD+ ++ ++I+G H ++ A + F MQ GV P++
Sbjct: 564 NLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQ 609
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 15/228 (6%)
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+ D+ W LI+ YAK G + A+Q+FD+MP+K+ SW+ ++ GYVQ ++EA
Sbjct: 134 KIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLH 193
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
M G +P+ V L ACA +D+G + + + G + D+ +GTA+I+M+ KC
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKC 253
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328
G ++ A VF+++P RD+ +TS+I+GLA H Q A LF M+ EGV P++
Sbjct: 254 GGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVA----- 308
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLN 373
+ L+ LE K+V ++E+ ++ + YV ALL+
Sbjct: 309 -------FVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLS 349
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 133/287 (46%), Gaps = 31/287 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F L R W +MI G A + +A L++ M P+ F +L
Sbjct: 254 GGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLL 313
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC L G HA++ +G ++ +V
Sbjct: 314 KACNHPEALEQGKRVHARMKEVGLDTEIYV------------------------------ 343
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+L++ Y K G + A ++F+ + +N VSW+AMI G+ Q +EA FN M G
Sbjct: 344 -GTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN + L AC+ AL QGR IH + + G D + TA++ MYAKCG + A
Sbjct: 403 IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDAR 462
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
+VF+ + ++V A+ ++I+ H++ +A+ F + EG+ P+ S
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSS 509
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L C L G IH ++ + I+ DI + +I MYAKCG +A +FD MP++DV
Sbjct: 111 LQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDV 170
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+++ L+ G H + A L +M +GV P++
Sbjct: 171 YSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDK 205
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 153/444 (34%), Positives = 245/444 (55%), Gaps = 27/444 (6%)
Query: 31 SASDIGDLSHGYRLFVCL-QYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
S++ G L RLF + +R WNTMI G A+ E +A AL+++M R L + +
Sbjct: 151 SSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVF 210
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDM 148
TF +L C+ L VG + H ++ G D +L N L+ +Y C + A + FD+
Sbjct: 211 TFVSLLLVCSKEGNLEVGRLVHCHMLASG-SRVDLILGNALVDMYGKCGDLWMAHRCFDV 269
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++V+SWTS++ AK G + AR F++MPE+N +SW+AMI+ YVQ F E L +
Sbjct: 270 MPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLY 329
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
N M+ G P+ + G L+ G L GR IH Y+ + + + + ++IDMYA+C
Sbjct: 330 NRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARC 389
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G ++T+ S+F MPN++ ++ +I LA H ++ A+ F M + P+E
Sbjct: 390 GQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLL 449
Query: 322 -----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+M IY ++P V+HY C+VDLLGR G L A ++++MP++PD
Sbjct: 450 SACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPD 509
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
V GAL+ ACR+HG V++GK ++ L+E + G+ VL+SN+ T QW ++++R+
Sbjct: 510 VVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKL 569
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEF 448
M D +K G S IE++ + EF
Sbjct: 570 MRDRGTKKDMGVSSIEINNSIHEF 593
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 200/425 (47%), Gaps = 60/425 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKII-----GFCSAS-DIGD--LSHGYRLFVCLQYRT 52
++ + Q+ +HL G P AV ++ +C+ S GD L H R+F +
Sbjct: 16 IRHLDQLHAHLLAHG----PSAVASVVPQLVASYCALSGRAGDVALCHARRMFDRVPDPD 71
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
F +N++IR ++ P +A L++ +LR LPN +T F+L+AC+ L H
Sbjct: 72 RFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALATHG 131
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSVNRDVISWTSLINGYAKSGQIS 171
I+LG+ FV N LLH A+ + +R+LF +M+ +R+V+SW ++I G A++G+ S
Sbjct: 132 VAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETS 191
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
A +F +M + V D+F V L C+
Sbjct: 192 EACALFREMRRQG-----------VLADVFT--------------------FVSLLLVCS 220
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
G L+ GR +H ++ +G +D+ILG A++DMY KCG + A FD MP ++V ++TS
Sbjct: 221 KEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTS 280
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
++ LA H +A + F +M ++ +M Y VQ GR
Sbjct: 281 MLCALAKHGSVDAARDWFEQMPERNIISWNAMISCY-----VQG--------GRFPETLG 327
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIY 409
++ + + PD L +L+ +GD+ G+ + ++ S GV VL L ++Y
Sbjct: 328 LYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGR-MIHCYIQDSFSDPGVTVLNSLIDMY 386
Query: 410 ASTEQ 414
A Q
Sbjct: 387 ARCGQ 391
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 164/501 (32%), Positives = 261/501 (52%), Gaps = 56/501 (11%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q +H+ G +D F ++ + D S RLF+ + W +I G
Sbjct: 124 QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSR--RLFIETAKKDVVSWTALINGCLR 181
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
++A + +M S + T V ++C A ++R W +
Sbjct: 182 NGRAVEALECFVEMRSSGVEVDEVTV--------------VSVLCAAAMLRDVW--FGRW 225
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
++G ++ R ++D+ V ++L++ Y+K G A ++F++MP +N
Sbjct: 226 VHGFY--------VESGRVIWDVYVG------SALVDMYSKCGYCDDAVKVFNEMPTRNL 271
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
VSW A+I GYVQ + +KEAL+ F M + G PN + + ALTACA LG+LDQGRW+H Y
Sbjct: 272 VSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEY 331
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
VDR+ + L+ LGTA++DMY+KCGC++ A VF+ +P +DV+ +T++I+GLA + S+
Sbjct: 332 VDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSS 391
Query: 306 IELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVD 341
+ LF +M V PN M Y +EP V HYGC+VD
Sbjct: 392 LNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVD 451
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG LE A K + MP+EP V GAL + C +H +LG+ L++ H G
Sbjct: 452 LLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGR 511
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
++LL+N+Y+ ++W VRR M+ V K P CS IEV+GV+ EF++ +++++ +
Sbjct: 512 YILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESINV 571
Query: 462 VLLLFGIDKHLKSLCFFDDGN 482
++L + LK + D N
Sbjct: 572 YMMLGSVTAQLKLATYALDSN 592
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 169/472 (35%), Positives = 249/472 (52%), Gaps = 28/472 (5%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
DL+ +F + WN MI G+ +A L ++M ++ T++ I+
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297
Query: 97 ACADTSCLFVGLICHAQVIRLGWE-SYDFVL---NGLLHLYATCNCMDPARKLFDMSVNR 152
ACA+ +G HA +++ ++ F L N L+ LY N +D ARK+F R
Sbjct: 298 ACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
++I+W ++++GY +G++ A+ F++MP KN ++ + MI+G Q E L+ F M+
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR 417
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
L GF P GALTAC+ LGAL+ GR +HA + G E + +G A+I MYAKCG +E
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVE 477
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
A SVF +MP+ D+ ++ S+I+ L H AIELF +M EGV P+
Sbjct: 478 AAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS 537
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM E YGI P HY +VDL RAGM A+ V+ MP +P V
Sbjct: 538 HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVW 597
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
ALL CR+HG++DLG E E L + ++G +VLLSNIYA +WN V KVR+ M D
Sbjct: 598 EALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQ 657
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
VRK P CS IEV+ V F+ + + + + L + +K L + D
Sbjct: 658 AVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPD 709
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 193/398 (48%), Gaps = 43/398 (10%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRGFAEKNEPIKAFALY 76
+P A+ + + +G+L G +F L R + +N MI G+A + A L+
Sbjct: 76 NPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELF 135
Query: 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVG--LIC---HAQVIRLGWESYDF-VLNGLL 130
+ M R DF P+++TF+ +L A LFVG C H V++ G VLN LL
Sbjct: 136 RAMRRDDFRPDDFTFTSVLSALV----LFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191
Query: 131 HLYA--------TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+Y +C+ M ARKLFD RD ++WT++I GY ++ ++ AR++F+ M E
Sbjct: 192 SVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+W+AMI+GYV F+EAL M+ G + + ++ACA +G+ G+ +
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQV 311
Query: 243 HAYVDRNGIELD----IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
HAY+ +N + + + + A+I +Y K ++ A +F +MP R++ + +++SG N
Sbjct: 312 HAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVN 371
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+ A F M ++ ++ M + L + G + K+ ++
Sbjct: 372 AGRMEEAKSFFEEMPVKNLLTLTVM----------------ISGLAQNGFGDEGLKLFKQ 415
Query: 359 MPI---EPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
M + EP ++ L AC V G ++ G++ LV
Sbjct: 416 MRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVH 453
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 148/327 (45%), Gaps = 27/327 (8%)
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
L N Y L + D + + HA +I G++ LN LL +Y + + AR
Sbjct: 9 LLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYAR 68
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLF 201
+LF+ N D I+ T+LI Y G + + R++F+ P +++V ++AMI GY
Sbjct: 69 QLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACA-FLGALDQGRWIHAYVDRNGIE-LDIILGT 259
ALE F M+ FRP+ L+A F+G Q +H V + G+ + +
Sbjct: 129 HSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLN 188
Query: 260 AIIDMYAK--------CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
A++ +Y K C + +A +FD MP RD +T++I+G +D A E+F
Sbjct: 189 ALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEA 248
Query: 312 M-QLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M + G N +S G H GC + L + +R + I+ D+
Sbjct: 249 MVENLGAAWNAMIS-------GYVHCGCFQEALTLC-------RKMRFLGIQFDDITYTT 294
Query: 371 LLNACRVHGDVDLGKETVESLVERSLD 397
+++AC G +GK+ +++ L+
Sbjct: 295 IISACANVGSFQMGKQVHAYILKNELN 321
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 33/276 (11%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ G + F + + MI G A+ + L+KQM F P ++ F+
Sbjct: 371 NAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAG 430
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
L AC+ L G HAQ++ LG+ES V N ++ +YA C ++ A +F + D
Sbjct: 431 ALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVD 490
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
++SW S+I + G A ++FD+M KE
Sbjct: 491 LVSWNSMIAALGQHGHGVKAIELFDQM--------------------LKE---------- 520
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G P+ + LTAC+ G +++GR + ++ ++ GI ++D++ + G
Sbjct: 521 -GVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFS 579
Query: 273 TACSVFDSMPNRD-VFAYTSLISGLANHDQSASAIE 307
A V DSMP++ + +L++G H IE
Sbjct: 580 YARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIE 615
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 247/456 (54%), Gaps = 51/456 (11%)
Query: 54 FIWNTMIRGFAEK-NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
F++NT+IR FA+ + A Y M R PN +TF F+L+ACA L +G HA
Sbjct: 192 FLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHA 251
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
+++ G+E V N L+H+Y C C D SG +S
Sbjct: 252 SMVKFGFEEDPHVRNTLVHMYCCC-CQD------------------------GSSGPVS- 285
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
A+++FD+ P K++V+WSAMI GY + A+ F MQ+ G P+ +V L+ACA
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGAL+ G+W+ +Y++R I + L A+IDM+AKCG ++ A VF M R + ++TS+
Sbjct: 346 LGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSM 405
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYG 328
I GLA H + A+ +F M +GV P++ +M ++
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFS 465
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I P ++HYGC+VD+L RAG + A + VR MP+EP+ + +++ AC G++ LG+
Sbjct: 466 IVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVA 525
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ L+ R HE +VLLSNIYA +W KVR M+ +RK+PG ++IE++ + EF
Sbjct: 526 KELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEF 585
Query: 449 VSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V+G++++ +EI ++ + + +K + ++V
Sbjct: 586 VAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQV 621
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 84/193 (43%), Gaps = 17/193 (8%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ ++F ++ RT W +MI G A ++A ++ +M+ P++ F +L
Sbjct: 382 GDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVL 441
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-------M 148
AC+ + GL+ E+ ++ + H + + A ++ + M
Sbjct: 442 SACSHS-----GLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAM 496
Query: 149 SVNRDVISWTSLINGYAKSGQI----SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
V + + W S++ G++ S+A+++ + P + ++ + N Y ++ +++
Sbjct: 497 PVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHES-NYVLLSNIYAKLLRWEKK 555
Query: 205 LEHFNYMQLCGFR 217
+ M + G R
Sbjct: 556 TKVREMMDVKGMR 568
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 243/467 (52%), Gaps = 32/467 (6%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G H RLF + + M R + +A A++ M+ P+N +
Sbjct: 59 LGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVA 118
Query: 95 LRACAD----TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
L AC T+ G HA ++ G E FV L+ +Y C + +R++FD
Sbjct: 119 LGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMP 178
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+R I+W ++++ YA+ G++ A ++F MP ++ VSW+ ++ GY +EAL F
Sbjct: 179 SRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQ 238
Query: 211 M---QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
M C PN + L ACA G L+ G W+HAY++RN + D L +IDMY K
Sbjct: 239 MVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCK 298
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
CG I+ A VF+ P RD+F++T++I GLA H ++ A+ +F MQ G+ P++
Sbjct: 299 CGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVG 358
Query: 322 -------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
SM + I P ++HYGC++DLLGR G L+ A ++R MP++
Sbjct: 359 VLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD 418
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
P+ + GA L+AC+VHG+++LGK E L D V+LS++YA + W G+ + R
Sbjct: 419 PNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARER 478
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGID 469
R M +V+K PGCS IE+ G V EFV+G + EI +L ++
Sbjct: 479 REMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVE 525
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 27/248 (10%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+L++ YA G AR++FD+MPE+ V +AM +V +A+ F M G
Sbjct: 50 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 109
Query: 218 PNHAGIVGALTACAFLGA----LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P++ + AL AC G+ + G+ IHA + +GIE D+ + T +I +Y +CG +
Sbjct: 110 PDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAV 169
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
+ VFD MP+R + +++ A H + +A ELF+ M VV ++ Y +
Sbjct: 170 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCV---- 225
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM------PIEPDNYVLGALLNACRVHGDVDLGKET 387
AG A + R+M + P+ + +L AC G ++ G
Sbjct: 226 ------------AGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGI-W 272
Query: 388 VESLVERS 395
V + +ER+
Sbjct: 273 VHAYIERN 280
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 28/167 (16%)
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L TA++ YA G + A +FD MP + + T++ Q+A AI +F M +G
Sbjct: 48 LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 107
Query: 317 VVPN---------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
V P+ ++ GIEP V L+ + G G L
Sbjct: 108 VFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKL 167
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+++V +MP A+L+ HG VD E ++ R +
Sbjct: 168 AVSRRVFDDMPSR-STITWNAMLHQYARHGKVDTAYELFLAMPRRDV 213
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 169/472 (35%), Positives = 249/472 (52%), Gaps = 28/472 (5%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
DL+ +F + WN MI G+ +A L ++M ++ T++ I+
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297
Query: 97 ACADTSCLFVGLICHAQVIRLGWE-SYDFVL---NGLLHLYATCNCMDPARKLFDMSVNR 152
ACA+ +G HA +++ ++ F L N L+ LY N +D ARK+F R
Sbjct: 298 ACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
++I+W ++++GY +G++ A+ F++MP KN ++ + MI+G Q E L+ F M+
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR 417
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
L GF P GALTAC+ LGAL+ GR +HA + G E + +G A+I MYAKCG +E
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVE 477
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
A SVF +MP+ D+ ++ S+I+ L H AIELF +M EGV P+
Sbjct: 478 AAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS 537
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM E YGI P HY +VDL RAGM A+ V+ MP +P V
Sbjct: 538 HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVW 597
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
ALL CR+HG++DLG E E L + ++G +VLLSNIYA +WN V KVR+ M D
Sbjct: 598 EALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQ 657
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
VRK P CS IEV+ V F+ + + + + L + +K L + D
Sbjct: 658 AVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPD 709
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 192/398 (48%), Gaps = 43/398 (10%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRGFAEKNEPIKAFALY 76
+P A+ + + +G+L G +F L R + +N MI G+A + A L+
Sbjct: 76 NPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELF 135
Query: 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVG--LIC---HAQVIRLGWESYDF-VLNGLL 130
+ M R DF P+++TF+ +L A LFVG C H V++ G VLN LL
Sbjct: 136 RAMRRDDFRPDDFTFTSVLSALV----LFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191
Query: 131 HLYAT--------CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+Y C+ M ARKLFD RD ++WT++I GY ++ ++ AR++F+ M E
Sbjct: 192 SVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+W+AMI+GYV F+EAL M+ G + + ++ACA +G+ G+ +
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQM 311
Query: 243 HAYVDRNGIELD----IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
HAY+ +N + + + + A+I +Y K ++ A +F +MP R++ + +++SG N
Sbjct: 312 HAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVN 371
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+ A F M ++ ++ M + L + G + K+ ++
Sbjct: 372 AGRMEEAKSFFEEMPVKNLLTLTVM----------------ISGLAQNGFGDEGLKLFKQ 415
Query: 359 MPI---EPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
M + EP ++ L AC V G ++ G++ LV
Sbjct: 416 MRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVH 453
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 148/327 (45%), Gaps = 27/327 (8%)
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
L N Y L + D + + HA +I G++ LN LL +Y + + AR
Sbjct: 9 LLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYAR 68
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLF 201
+LF+ N D I+ T+LI Y G + + R++F+ P +++V ++AMI GY
Sbjct: 69 QLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACA-FLGALDQGRWIHAYVDRNGIE-LDIILGT 259
ALE F M+ FRP+ L+A F+G Q +H V + G+ + +
Sbjct: 129 HSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLN 188
Query: 260 AIIDMYAK--------CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
A++ +Y K C + +A +FD MP RD +T++I+G +D A E+F
Sbjct: 189 ALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEA 248
Query: 312 M-QLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M + G N +S G H GC + L + +R + I+ D+
Sbjct: 249 MVENLGAAWNAMIS-------GYVHCGCFQEALTLC-------RKMRFLGIQFDDITYTT 294
Query: 371 LLNACRVHGDVDLGKETVESLVERSLD 397
+++AC G +GK+ +++ L+
Sbjct: 295 IISACANVGSFQMGKQMHAYILKNELN 321
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 33/276 (11%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ G + F + + MI G A+ + L+KQM F P ++ F+
Sbjct: 371 NAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAG 430
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
L AC+ L G HAQ++ LG+ES V N ++ +YA C ++ A +F + D
Sbjct: 431 ALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVD 490
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
++SW S+I + G A ++FD+M KE
Sbjct: 491 LVSWNSMIAALGQHGHGVKAIELFDQM--------------------LKE---------- 520
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G P+ + LTAC+ G +++GR + ++ ++ GI ++D++ + G
Sbjct: 521 -GVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFS 579
Query: 273 TACSVFDSMPNRD-VFAYTSLISGLANHDQSASAIE 307
A V DSMP++ + +L++G H IE
Sbjct: 580 YARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIE 615
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 165/507 (32%), Positives = 258/507 (50%), Gaps = 55/507 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q + + +HL S L + + II A G L R+F + + W +I
Sbjct: 103 VEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAK-CGCLDDARRMFDEMPTKDMVTWTALI 161
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GF++ N P A L+ QMLR F PN++T S +L+A L G HA ++ G++
Sbjct: 162 AGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ 221
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V + L+ +YA C MD A+ FD + +SW +LI+G+A+ G+ A + KM
Sbjct: 222 SSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
KN F+P H L+ACA +GAL+QG+
Sbjct: 282 QRKN-------------------------------FQPTHFTYSSVLSACASIGALEQGK 310
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+HA++ ++G++L +G ++DMYAK G I+ A VFD + DV ++ ++++G A H
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370
Query: 301 QSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYG 337
++ F +M G+ PNE + + Y +EP V HY
Sbjct: 371 LGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYV 430
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
VDLLGR G+L+ A++ +REMPIEP V GALL ACR+H +++LG E E
Sbjct: 431 TFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPH 490
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
G +LLSNIYAS +W V KVR+ M+++ V+K P CS +E++ V FV+ + T+
Sbjct: 491 DSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPR 550
Query: 458 MEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++EI I +K + + D + V
Sbjct: 551 IKEIRGKWEEISGKIKEIGYVPDTSHV 577
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 24/181 (13%)
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY-VDRNGIELDIILGTAIIDMYA 266
+ +Q P++ L C LG ++QGR +HA+ VD + ++ ++L I++MYA
Sbjct: 75 LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSE 325
KCGC++ A +FD MP +D+ +T+LI+G + +++ A+ LF +M G PN ++S
Sbjct: 135 KCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSS 194
Query: 326 I-------YGIEPGVQ------HYG---------CLVDLLGRAGMLEAAKKVVREMPIEP 363
+ +G++PG Q YG LVD+ R G ++AA+ MP +
Sbjct: 195 LLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS 254
Query: 364 D 364
+
Sbjct: 255 E 255
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 162/488 (33%), Positives = 263/488 (53%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S+ G++ +F + + WN MI G+AE +A L+K+M++++
Sbjct: 139 ITGYASS---GNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVR 195
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T +L ACA + + +G H+ + G+ S ++N L+ LY+ C
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC--------- 246
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
GQ+ A +F+ + K+ VSW+ +I GY ++L+KEAL
Sbjct: 247 ----------------------GQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEAL 284
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN--GIELDIILGTAIID 263
F M G PN IV L ACA LGA+D GRWIH Y+D+ + L T++ID
Sbjct: 285 LLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLID 344
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VF+SM ++ + ++ ++I G A H ++ + +LF RM+ G+ P++
Sbjct: 345 MYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDIT 404
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM++ Y I P ++HYGC++DLLG +G+ + AK++++ M
Sbjct: 405 FVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTM 464
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
P+EPD + +LL ACR HG+++L + +L++ ++ G +VLLSNIYA+ +W+ V
Sbjct: 465 PMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVA 524
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
KVR + ++KVPGCS IE+D V EF+ G++ + EI +L ++ L+ F
Sbjct: 525 KVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVP 584
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 585 DTSEVLQE 592
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 222/431 (51%), Gaps = 64/431 (14%)
Query: 25 KIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD 83
K++ FC S D + +F +Q IWNTM+RG+A ++P+ A LY M+
Sbjct: 2 KLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLG 61
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
LPN+YTF F+L++CA + G H V++LG+E +V L+ +YA ++ A
Sbjct: 62 LLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAH 121
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K+FD S +RDV+S+T+LI GYA SG I A++MFD++P K+ VSW+AMI+GY + +KE
Sbjct: 122 KVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKE 181
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
ALE F M RP+ +V L+ACA +++ GR +H+++D +G ++ + A+ID
Sbjct: 182 ALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALID 241
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM 323
+Y+KCG +ETAC +F+ + +DV ++ +LI G + + A+ LF M G PN+
Sbjct: 242 LYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 301
Query: 324 SEIYGIEPGVQHYGC---------------------------LVDLLGRAGMLEAAKKV- 355
I I P H G L+D+ + G +EAA +V
Sbjct: 302 --IVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVF 359
Query: 356 ---------------------------------VREMPIEPDNYVLGALLNACRVHGDVD 382
+R+ IEPD+ LL+AC G +D
Sbjct: 360 NSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLD 419
Query: 383 LGKETVESLVE 393
LG+ +S+ +
Sbjct: 420 LGRHIFKSMTQ 430
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 156/440 (35%), Positives = 243/440 (55%), Gaps = 29/440 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
T + + I + + + A AL ML LP +T S L AC S G H
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLS---PGRALH 409
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQI 170
+L +V LL +YA AR LFD M + V+S T+++ YA G +
Sbjct: 410 GYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGAL 469
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
AR +FD +P K+ V W+AMI+GY Q EAL F M G P+ +V L+A
Sbjct: 470 DDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAV 529
Query: 231 AFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
A LG ++ G+W+H+YV + ++L + +GTA+IDMY KCG + A VF + ++D+ +
Sbjct: 530 AQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVW 589
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
++I+G A H S A+E+F++ + +G+ P +SM
Sbjct: 590 NAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMER 649
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
YGI+P ++HYGC+VDLLGRAG+++ A +V+ M I PD + +LL ACR+H ++ LG+
Sbjct: 650 EYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQ 709
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ + LV + L + G+++LLSNIYA+ W V +VR M+ + ++K PGCS IE+D V
Sbjct: 710 QIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREV 769
Query: 446 CEFVSGERTNVLMEEIVLLL 465
EFV+G+ ++ +EI ++L
Sbjct: 770 YEFVAGDMSHPRTDEIYVML 789
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 50/294 (17%)
Query: 17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALY 76
L DP V +D+G L LF L + WN MI G+ + P +A L+
Sbjct: 448 LPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLF 507
Query: 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV---------IRLGWESYDFVLN 127
++ML S P+ T +L A A + G H+ V +R+G
Sbjct: 508 RRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVG--------T 559
Query: 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
L+ +Y C + A +F ++D++ W ++INGYA G A +MF + E+
Sbjct: 560 ALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQ---- 615
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
G P +G L AC+ G +++GR ++
Sbjct: 616 ---------------------------GLWPTDITFIGLLNACSHSGMVEEGREFFQSME 648
Query: 248 RN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANH 299
R GI+ I ++D+ + G I+ A + SM D + SL++ H
Sbjct: 649 REYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLH 702
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 166/503 (33%), Positives = 264/503 (52%), Gaps = 39/503 (7%)
Query: 12 TVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIK 71
T +++P I G+ D L L L Y WN MI G+ + +
Sbjct: 210 TPKNQIYEPSWTTMIAGYVRNDD---LVAARELLDGLTYPIDVAWNAMISGYVRRGLYEE 266
Query: 72 AFALYKQMLRSDFLPNNYTFSFILRACADTSC-----LF-VGLICHAQVIRLGWE-SYDF 124
AF +++M + YT++ ++ AC SC +F G H ++R E S+ F
Sbjct: 267 AFDTFRRMHSMGIQEDEYTYTSLISACG--SCNEKMGMFNCGRQVHGYILRTVVEPSHHF 324
Query: 125 VL---NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
VL N L+ Y + M AR++FD RD+ISW ++++GY + +I A +F +MP
Sbjct: 325 VLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMP 384
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E+N ++W+ MI+G Q +E L+ FN M+ G P GA+TAC+ LG+LD G+
Sbjct: 385 ERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQ 444
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IH+ V R G + + G A+I MY++CG +E+A SVF +MP D ++ ++I+ LA H
Sbjct: 445 IHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGH 504
Query: 302 SASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYG 337
AIELF +M E ++P+ ++M YGI PG HY
Sbjct: 505 GVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYA 564
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
L+DLL RAGM A+ V++ MP E + ALL CR+HG+++LG + + L+E
Sbjct: 565 RLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPG 624
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+G +++LSN+YA+ QW+ V +VR M + V+K PGCS +EV+ +V F+ + +
Sbjct: 625 QDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPE 684
Query: 458 MEEIVLLLFGIDKHLKSLCFFDD 480
++ + L + +K L + D
Sbjct: 685 VQAVYTYLQQLVNEMKKLGYVPD 707
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 187/411 (45%), Gaps = 53/411 (12%)
Query: 9 SHLTVSGTLWD----PFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRG 62
S++T + L+D P V + + S G++ +LF L R T +N MI
Sbjct: 54 SNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITA 113
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA-----DTSCLFVGLICHAQVIRL 117
++ N+ A L+ QM R FLP+ +TFS +L A + + C + H +VI+L
Sbjct: 114 YSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQML----HCEVIKL 169
Query: 118 GWESYDFVLNGLLHLYATC---------NCMDPARKLFDMSVNRDVI--SWTSLINGYAK 166
G V N LL Y C M ARK+FD + + SWT++I GY +
Sbjct: 170 GTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVR 229
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226
+ + AR++ D + V+W+AMI+GYV+ L++EA + F M G + +
Sbjct: 230 NDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSL 289
Query: 227 LTACAF----LGALDQGRWIHAYVDRNGIELD----IILGTAIIDMYAKCGCIETACSVF 278
++AC +G + GR +H Y+ R +E + + A+I Y K + A VF
Sbjct: 290 ISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVF 349
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC 338
D MP RD+ ++ +++SG N + A +F M E V +
Sbjct: 350 DKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMP----------------ERNVLTWTV 393
Query: 339 LVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKE 386
++ L + G E K+ +M +EP +Y + AC V G +D G++
Sbjct: 394 MISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQ 444
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 170/365 (46%), Gaps = 42/365 (11%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HA ++ G++ F+LN L+++Y + + ARKLFD D+++ T+L++ Y+ SG +
Sbjct: 28 HAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNV 87
Query: 171 SIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+A+Q+F+ P ++ VS++AMI Y + AL F M+ GF P+ L+
Sbjct: 88 KLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLS 147
Query: 229 ACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGC---------IETACSVF 278
A + + ++ + +H V + G L + A++ Y C + +A VF
Sbjct: 148 ALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVF 207
Query: 279 DSMPNRDVF--AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336
D P ++ ++T++I+G +D +A EL L+G+ Y I+ +
Sbjct: 208 DETPKNQIYEPSWTTMIAGYVRNDDLVAAREL-----LDGLT--------YPIDVA---W 251
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNAC----RVHGDVDLGKETVE 389
++ R G+ E A R M I+ D Y +L++AC G + G++ V
Sbjct: 252 NAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQ-VH 310
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV-RKVPGCSLIEVDGVVCEF 448
+ R++ H +LS A + K R +E V K+P +I + V+ +
Sbjct: 311 GYILRTVVEPSHHFVLSVNNALITFYT---KYDRMIEARRVFDKMPVRDIISWNAVLSGY 367
Query: 449 VSGER 453
V+ +R
Sbjct: 368 VNAQR 372
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
R +HA++ +G + + + +I++Y K I A +FD +P D+ A T+L+S ++
Sbjct: 24 ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83
Query: 299 HDQSASAIELF 309
A +LF
Sbjct: 84 SGNVKLAQQLF 94
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 162/511 (31%), Positives = 265/511 (51%), Gaps = 41/511 (8%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + +I + + VSG + + ++ + G L ++F + +T +WN +I+
Sbjct: 41 RNLAKIHAQIVVSGFSQKNYILNHLLSLYIS--FGSLGSAQKVFEDITAPSTTVWNQIIK 98
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G K+ L+K+M + N +T+SF+L AC + G H +V+ G+ S
Sbjct: 99 GHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWS 158
Query: 122 YDFVLNGLLHLYATCNC-----MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
+V L++LYA + AR LFD + +V+ W SL+ GY + G AR++
Sbjct: 159 NLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKV 218
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD+MPE+N +W+ M+ G+ Q K AL F+ M+ G + +V AL+ACA LG L
Sbjct: 219 FDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDL 278
Query: 237 DQGRWIHAYVDRN----GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
G+WIH YV+R + + + L A+I MYA CG ++ A VF+ +P R+ +++S+
Sbjct: 279 TLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSI 338
Query: 293 ISGLANHDQSASAIELFMRMQLEG---VVPNE------------------------SMSE 325
I+G A AI +F M G V P+E SM +
Sbjct: 339 ITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHK 398
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+G+ P ++HYGC+VDLL RAG+L A ++ MP++P+N V GALL+ CR+H + ++
Sbjct: 399 TFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVS 458
Query: 386 ETVESL---VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+ L + + G +LL+N+YA+ +W VRR M D V+K G S IE++
Sbjct: 459 HVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518
Query: 443 GVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
GV+C F+ GE T+ + I +L I + +
Sbjct: 519 GVLCSFMVGEETHKDVNLIYEMLGNITRQTQ 549
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 255/480 (53%), Gaps = 61/480 (12%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
++F + R +N MIR + + ++++M+ F P+NYT+ +L+AC+ +
Sbjct: 74 KVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSE 133
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L GL+ H V+++G + FV NGL+ +Y C C+ AR++FD + +DV+SW S++
Sbjct: 134 NLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVA 193
Query: 163 GYAKSGQ----ISIARQM---------------------------------FDKMPEKNA 185
GYA + + + I R+M F + KN
Sbjct: 194 GYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNL 253
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
+SW+ MI Y++ L +A++ + M+ C P+ L AC L AL GR IH Y
Sbjct: 254 ISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEY 313
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V++ + +++L ++IDMYA+CGC++ A VFD M RDV ++TSLIS Q +A
Sbjct: 314 VEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNA 373
Query: 306 IELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVD 341
+ LF M G P+ + M++ Y I P ++HY CLVD
Sbjct: 374 VALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVD 433
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG ++ A ++++MPIEP+ V LL++CRV ++D+G ++L++ + + G
Sbjct: 434 LLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGY 493
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VLLSNIYA +W V ++R M+ ++RK PG S +E++ V F++G+ ++ +EI
Sbjct: 494 YVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEI 553
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%)
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
L+ YA G+ + R++FD+M ++N V ++ MI YV + + L F M GFRP
Sbjct: 58 KLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRP 117
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
++ L AC+ L G IH V + G++ ++ +G +I MY KCGC+ A VF
Sbjct: 118 DNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVF 177
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
D M +DV ++ S+++G A++ + A+E+ M+ G P+
Sbjct: 178 DEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPD 219
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L R+F +++R W ++I + + A AL+ +ML S P++ F IL
Sbjct: 337 GCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAIL 396
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ + L G I Q+ D + +
Sbjct: 397 SACSHSGLLDEGRIYFKQMTD------------------------------DYRITPRIE 426
Query: 156 SWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMING 194
+ L++ ++G++ A + +MP E N W+ +++
Sbjct: 427 HYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSS 466
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 255/466 (54%), Gaps = 24/466 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+D G ++ +LF + + +++ + + +A +L+ +++ + P+ +
Sbjct: 58 ADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVV 117
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L A + VG H + RLG + V N L+ +Y+ C + A K+FD +
Sbjct: 118 GALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLK 177
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D ++W S+++GY K + A FD++P ++ V+W+A+I G+VQ ALE F M
Sbjct: 178 DEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMV 237
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
L G RP H IVG L+ACA +GALD GR IH Y + L+II+ A++DMYAK G IE
Sbjct: 238 LEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIE 297
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
A SVF + ++D F +T++IS A+ELF M GVVPN
Sbjct: 298 MAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACS 357
Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
+ M ++Y I+P ++HYGC++DLLGR G+LE A+ ++ +M +EPD +
Sbjct: 358 HSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIW 417
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
+LL+AC V G+ L + + +V+R +GV+VLL N+YAS+ +W ++R+ M
Sbjct: 418 RSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQMLSL 477
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
++ K PGCS IE+DG V EF+ ++T+ EI L + + LK+
Sbjct: 478 KIFKKPGCSWIEIDGAVHEFLVEDKTHDARREIYETLEYMSRQLKT 523
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 160/321 (49%), Gaps = 69/321 (21%)
Query: 131 HLYATCNCMDPARKLFDMSV------NRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
HL A C + +++ +++ ++ +S + YA G+++ AR++FD++P +
Sbjct: 19 HLLAQCKKLRELQRIHALAIAHGLHPHQQSVS-CKIFRCYADFGRVADARKLFDEIPNPD 77
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ--GRWI 242
+S++++++ ++Q+D +EA+ F + G RP+ +VGAL+A + GA DQ GR +
Sbjct: 78 LISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASS--GAGDQVVGRAV 135
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM--------------------- 281
H + R G++ ++++G A+IDMY++CG E+A VFD M
Sbjct: 136 HGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGV 195
Query: 282 ----------PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SM 323
P R V A+T+LI+G Q A+ELF RM LEG P +
Sbjct: 196 DSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSAC 255
Query: 324 SEIYGIEPG--VQHYG-------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
++I ++ G + YG L+D+ ++G +E A V +E+ D++
Sbjct: 256 ADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQ-SKDSFTW 314
Query: 369 GALLNACRVHGDVDLGKETVE 389
+++ C V GD GK+ +E
Sbjct: 315 TTMISCCTVQGD---GKKALE 332
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 179/585 (30%), Positives = 286/585 (48%), Gaps = 99/585 (16%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSA--------SDIGDLSHGYRLFVCLQYRT-TFIW 56
QI + + + +P K I CS+ + + H R+F +R F+
Sbjct: 170 QIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLC 229
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
N+MI+ + + ++FALY+ + R + F P+++TFS + ++CA ++ G H+ V+
Sbjct: 230 NSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVV 289
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS---- 171
+G+ + L+ +YA MD ARKLFD ++R +SWT+LI GY +SG +
Sbjct: 290 AVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGK 349
Query: 172 ---------------------------IARQMFDKMPE---------------------- 182
AR++FD+MPE
Sbjct: 350 LFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSA 409
Query: 183 ---------KNAVSWSAMINGYVQVDLFKEALEHFNYMQ-LCGFRPNHAGIVGALTACAF 232
KN SW+AMI+GY Q EAL+ F+ MQ P+ IV L A A
Sbjct: 410 RSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIAD 469
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGALD G W+H +V R ++ +GTA+IDMYAKCG I + VFD+MP ++ ++ +L
Sbjct: 470 LGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNAL 529
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGI 329
I+ A + ++ A+ LFM M +G +PNE E +G+
Sbjct: 530 INAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGL 589
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P ++HYGC+VDLLGRAG L+ A+K++ MP E + +L + L AC DV + ++
Sbjct: 590 TPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLK 649
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
++ ++G +++L N+YA+ ++W ++V+ M N V+K GCS IEVD V EFV
Sbjct: 650 EAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFV 709
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDC 494
+G+R + E I +L + H+K + G +L+C
Sbjct: 710 AGDRVHPKWEAIHSVLGQLWVHMKGTRLH---TKTMKRGRDVLNC 751
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/409 (36%), Positives = 241/409 (58%), Gaps = 8/409 (1%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT---SCLFVGLI 109
T W + I + N +KA + + QML ++ PN+ T +L ACA + + + G
Sbjct: 52 TVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAA 111
Query: 110 CHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H + G+ D ++ L+ +YA C +D AR +FD R+++SW ++I+GY K+G
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ A ++FDK+P KN VSW+ +I G+V+ + ++EALE F MQL G P+ ++ ++
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA LGAL G W+H V + ++ + ++IDMYA+CGCIE A VFD M R++ +
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVS 291
Query: 289 YTSLISGLANHDQSASAIELF----MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG 344
+ S+I G A + + A+ F + EG+ + + P ++HYGCLVDL
Sbjct: 292 WNSIIVGFAVNGLADKALSFFPCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYS 351
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404
RAG L+ A V+++MP+ P+ VLG+LL ACR GDV+L ++ ++ VE + +VL
Sbjct: 352 RAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPGGDSNYVL 411
Query: 405 LSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
SNIYA+ +W+G KVRR M++ ++K S IE+D + +FVSG++
Sbjct: 412 FSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSGDK 460
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 44/330 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ +LF L + W +I GF +K +A +++M + +P+ T I+
Sbjct: 171 GDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAII 230
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L +GL H V++ + VLN L+ +YA C C++ AR++FD R+++
Sbjct: 231 SACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLV 290
Query: 156 SWTSLINGYAKSGQISIARQMFD-----------------KMPEKNAVS---WSAMINGY 195
SW S+I G+A +G A F K +N+ + +++ Y
Sbjct: 291 SWNSIIVGFAVNGLADKALSFFPCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLY 350
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIEL 253
+ KEA + M + PN + L AC G ++ + Y G +
Sbjct: 351 SRAGRLKEAWDVIKKMPMM---PNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPGGDS 407
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDV---FAYTSL---------ISGLANHDQ 301
+ +L + I YA G + A V M R + A++S+ +SG H++
Sbjct: 408 NYVLFSNI---YAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSGDKYHEE 464
Query: 302 S---ASAIELF-MRMQLEGVVPNESMSEIY 327
+ SA+EL + L G VP+ S E Y
Sbjct: 465 NDYIYSALELLSFELHLYGYVPDFSGKESY 494
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 27/240 (11%)
Query: 181 PEKN-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF---LGAL 236
P N VSW++ I+ + + + F +A F M PNH ++ L+ACA ++
Sbjct: 47 PNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSI 106
Query: 237 DQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
G +H + ++G + D+++GTA+IDMYAKCG ++ A VFD M R++ ++ ++I G
Sbjct: 107 TFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDG 166
Query: 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ A++LF ++ ++ VV S + + G G C E A +
Sbjct: 167 YMKNGDVDDALKLFDKLPVKNVV---SWTVVIG---GFVKKEC----------YEEALEC 210
Query: 356 VREMPIE---PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYA 410
REM + PD + A+++AC G + LG V LV + + V VL L ++YA
Sbjct: 211 FREMQLAGVVPDFVTVIAIISACANLGALGLGL-WVHRLVMKKEFRDNVKVLNSLIDMYA 269
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/535 (32%), Positives = 274/535 (51%), Gaps = 77/535 (14%)
Query: 1 MKQIKQIQSHLTVSG-TLWDPFAVGKIIGFCSASDIGDLSHGYRLF--------VCLQYR 51
+ +K I S L+ G L P + ++I S +GDL LF Q
Sbjct: 38 LTTLKLIHSSLSTRGFLLHTPHFLARLIIL--YSKLGDLHSARTLFDHRHHHHHGHTQAP 95
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
+F+ NTM+R +A +A LY M R NN+T+ F+L+ CA G + H
Sbjct: 96 NSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVH 155
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS---- 167
QV+R G+ S FV L+ +YA C + A ++FD + RDV+ WT++I Y ++
Sbjct: 156 GQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPL 215
Query: 168 ----------------------------GQ-------ISIARQMFDKMPEKNAVSWSAMI 192
GQ IS AR +FD+M E+N +SW++M+
Sbjct: 216 KALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSML 275
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252
+GY Q +AL FN MQ PN + ++AC++LG+ GR +H +V + ++
Sbjct: 276 SGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMD 335
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDS--MPNRDVFAYTSLISGLANHDQSASAIELFM 310
+D L AI+DMY KCG ++TA +F++ + RDV ++ LISG H A+ELF
Sbjct: 336 IDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFS 395
Query: 311 RMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRA 346
RMQ+EGV PN+ M+++ + P ++HY C+VD+LGRA
Sbjct: 396 RMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRA 454
Query: 347 GMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406
G L A ++++++P P + V GALL ACR+HG+ +LG+ +L + +H G +VL+S
Sbjct: 455 GFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMS 514
Query: 407 NIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
NIYA++ +W VE VR+ M+ ++K S+IE V F + ++++ E+
Sbjct: 515 NIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREV 569
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 236/430 (54%), Gaps = 51/430 (11%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
ML LPN +T+ F+L+ACA L +G H V++ G+ V N L+H+Y C
Sbjct: 1 MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCR- 59
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
G I AR++FD+M + ++VSWSAMI GYV+V
Sbjct: 60 --------------------------GGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRV 93
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+A+ F MQ+ G P+ +V L+AC LGAL+ G+W+ +YV++ ++ ++ L
Sbjct: 94 GRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELS 153
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A+IDM+AKCG ++ A ++F SM R++ ++TS+I GLA H + A+ +F M GV
Sbjct: 154 NALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVT 213
Query: 319 PN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
P+ +SM + + I P ++HYGC+VD+L RAG+++ A K
Sbjct: 214 PDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALK 273
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
V+EMPI+P+ V L+NACR HG++ LG++ L+ HE +VLLSNIYA
Sbjct: 274 FVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSD 333
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
W ++R M+ ++K+PG ++IE+D + EFV+G++++ +EI ++ + K +K
Sbjct: 334 WEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKR 393
Query: 475 LCFFDDGNEV 484
+ EV
Sbjct: 394 AGYMPTTTEV 403
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 42/191 (21%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++Q ++ +S L D FA GD+ LF ++ R W ++I G A
Sbjct: 144 ERVQKNVELSNALIDMFA-----------KCGDVDKATNLFRSMRERNIVSWTSVIGGLA 192
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
++A A++++M+RS P++ F +L AC+ H+ ++ G +D
Sbjct: 193 MHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACS-----------HSGLVDKGKRYFDS 241
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP-EK 183
+ RK D S+ + + +++ ++G + A + +MP +
Sbjct: 242 M-----------------RK--DFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDP 282
Query: 184 NAVSWSAMING 194
N V W +IN
Sbjct: 283 NPVVWRTLINA 293
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/497 (30%), Positives = 267/497 (53%), Gaps = 26/497 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+ +++ + + +G F G ++GF A G + G ++F ++ +W +I
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVAC--GLVGKGRQVFDEMRQPGLVLWTLII 164
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + P KA L++ M P+ S ++ AC L V H + + G E
Sbjct: 165 RAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIE 224
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV + L+ Y C +D A + F + ++++ W ++I+ + + + +Q+F M
Sbjct: 225 VDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSM 284
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+++ VSW++MI G+ ++ ++EAL F+ M+ G PN ++ L+ACA GALD G
Sbjct: 285 PDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGA 344
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIHAYVD+N + D L +++IDMY+KCG I+ A +F+ RD+F +TS++ GLA H
Sbjct: 345 WIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHG 404
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+ F +M+ V P+ +SM +++G+ P V+HY
Sbjct: 405 RGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHY 464
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
G +VDLLGR G L+ A ++ MP+E + + GA L+ACRVH +V+LG+ L+
Sbjct: 465 GXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXP 524
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
V+LSN+YA +W+ +R+ ++ ++K PGCS IEV+G V F+ G+ ++
Sbjct: 525 RDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHP 584
Query: 457 LMEEIVLLLFGIDKHLK 473
EI ++ I+K ++
Sbjct: 585 CYTEINSMVEKIEKLMR 601
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 144/339 (42%), Gaps = 58/339 (17%)
Query: 54 FIWNTMIR-----GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
F+WNTMIR G ++ P+ Y Q LR+ PN +TF ++L+A + G
Sbjct: 55 FVWNTMIRKQVENGLITRDPPL---LYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGE 111
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HA V+R G+ +FV LL Y C + R++FD
Sbjct: 112 EVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFD--------------------- 150
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+M + V W+ +I YV V ++ALE F M+ G P+ + ++
Sbjct: 151 ----------EMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVS 200
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LG L + +H +++++GIE+D + + +I Y +CG ++ A F P +++
Sbjct: 201 ACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVV 260
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
+ ++I H+ +LF M VV SM + R G
Sbjct: 261 WNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSM----------------IGGFARIGQ 304
Query: 349 LEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLG 384
+ A EM + P+ L + L+AC HG +D G
Sbjct: 305 YQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTG 343
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 26/238 (10%)
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQ--LCGFRPNHAGIVGALTACAFLGALDQGRW 241
N W+ MI V+ L YMQ G RPN + L A + +G
Sbjct: 53 NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+HA V R G + A++ Y CG + VFD M + +T +I
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172
Query: 302 SASAIELFMRMQLEGVVPN-----------------------ESMSEIYGIEPGVQHYGC 338
A+ELF M+ G+ P+ E GIE
Sbjct: 173 PEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L+ G G L+ A + +E P++ + V +++ H +++LGK+ +S+ +R +
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDV 289
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/445 (36%), Positives = 248/445 (55%), Gaps = 40/445 (8%)
Query: 80 LRSDFLPNNYTFSFILR------------ACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
+R+ LP YTFS +L + A L + H Q ++ G ++ V N
Sbjct: 96 IRAATLPTPYTFSLLLASLAASSSRSRTPSAAVCDRLAAAGLAHGQALKHGALAHPVVTN 155
Query: 128 GLLHLYATCNCMDPARKLFDMS--VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
LL LY + AR++FD S + D SW ++++GY K G + AR++F +MPE+
Sbjct: 156 CLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGL 215
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
VSWSAMI+ ++ F EAL F+ M GFRP+ + L ACA LGAL++GRW+H +
Sbjct: 216 VSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRF 275
Query: 246 VDRNGIEL---DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
+ G+ +++L TA++DMY KCGC++ A VFD + ++DV + ++I GLA +
Sbjct: 276 LKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHG 335
Query: 303 ASAIELFMRMQLEGVVPNESM-----------------SEIY------GIEPGVQHYGCL 339
A+ELF RM G VPNES EI+ GIEP +HYGCL
Sbjct: 336 KRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCL 395
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
DLLGRAG+LE A+ V+ +MP+EP GAL+++C +H +V +G+ + L+E D
Sbjct: 396 ADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDG 455
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +V+L N+YA W + +R+ ME+ +K G S IE +G+V EF SG+ +
Sbjct: 456 GRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTR 515
Query: 460 EIVLLLFGIDKHLKSLCFFDDGNEV 484
+I LL +++ L+ + + D ++V
Sbjct: 516 QIYALLEDMEQRLQLIGYVKDTSQV 540
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 104/250 (41%), Gaps = 34/250 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL +FV + R W+ MI E +A ++ QM+ + F P+ S +L
Sbjct: 198 GDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVL 257
Query: 96 RACADTSCLFVGLICHAQVIRLGW-ESYDFVL--NGLLHLYATCNCMDPARKLFDMSVNR 152
+ACA L G H + G S D V+ L+ +Y C CMD A +FD ++
Sbjct: 258 KACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQ 317
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV+ W ++I G A +G K ALE F M
Sbjct: 318 DVVLWNAMIGGLAMNGH-------------------------------GKRALELFRRML 346
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
GF PN + V L AC G +D+G+ I + +GIE + D+ + G +E
Sbjct: 347 DMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLE 406
Query: 273 TACSVFDSMP 282
A +V MP
Sbjct: 407 EAEAVLLDMP 416
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 1/148 (0%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +F +Q + +WN MI G A +A L+++ML F+PN TF +L
Sbjct: 302 GCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVL 361
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK-LFDMSVNRDV 154
AC T + G + G E L L ++ A L DM +
Sbjct: 362 CACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHA 421
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPE 182
W +L++ + + ++ K+ E
Sbjct: 422 SQWGALMSSCLMHNNVGVGERVGKKLIE 449
>gi|414864742|tpg|DAA43299.1| TPA: hypothetical protein ZEAMMB73_867482 [Zea mays]
Length = 501
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/442 (38%), Positives = 249/442 (56%), Gaps = 38/442 (8%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
TT + + +IR + P +F+++ +LRS P+++TF F+ RA A S + H
Sbjct: 25 TTQLLDHLIRSTSSSPFPSLSFSVFILLLRSSLRPSHFTFPFLARAAARLSSASLASALH 84
Query: 112 AQVIRLGWESYDF-VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
A +RLG D V N L+H+YA C D A ++FD +++SW +L++GYAK +
Sbjct: 85 AHPLRLGLLPADLHVANSLVHMYAACALPDHANRVFDEIPRPNLVSWNALLDGYAKCHDL 144
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC------------GFRP 218
AR++F +MP+++ VSWSAMI+G V+ +EAL F M+ G R
Sbjct: 145 PAARKVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSAEEEDGGGGARA 204
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
N +V L ACA LG L++GR H + G L++ L T+++DMYAKCG I A VF
Sbjct: 205 NDVTMVSVLGACAQLGDLERGRRAHRCLRERGFALNLRLATSLVDMYAKCGAISEAMEVF 264
Query: 279 DSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------- 321
++P + DV + ++I GLA H + ++E+F+ MQ GV P+E
Sbjct: 265 WAVPVESTDVLIWNAVIGGLAVHGMATKSVEIFLEMQRAGVAPDEITYLCLLSACAHGGL 324
Query: 322 --------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
E G+ P V+HY CLVD+LGRAG LE VV+ MP++P VLGALLN
Sbjct: 325 VDEAWEFFRSLEAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPSVSVLGALLN 384
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
AC +HG V+LG+ LV+ DH+G ++ LSNIYA +W +K R+ MED V+KV
Sbjct: 385 ACHLHGWVELGEVLGRRLVQLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEDRGVKKV 444
Query: 434 PGCSLIEVDGVVCEFVSGERTN 455
PG S I+V G + F + ++T+
Sbjct: 445 PGFSEIDVGGGLSRFTAQDKTH 466
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 45/262 (17%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS------------DF 84
DL ++F + R W+ MI G + E +A AL++ M +
Sbjct: 143 DLPAARKVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSAEEEDGGGGA 202
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
N+ T +L ACA L G H + G F LN L
Sbjct: 203 RANDVTMVSVLGACAQLGDLERGRRAHRCLRERG-----FALNLRLA------------- 244
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFK 202
TSL++ YAK G IS A ++F +P + + W+A+I G +
Sbjct: 245 -------------TSLVDMYAKCGAISEAMEVFWAVPVESTDVLIWNAVIGGLAVHGMAT 291
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
+++E F MQ G P+ + L+ACA G +D+ ++ G+ + ++
Sbjct: 292 KSVEIFLEMQRAGVAPDEITYLCLLSACAHGGLVDEAWEFFRSLEAQGLRPHVEHYACLV 351
Query: 263 DMYAKCGCIETACSVFDSMPNR 284
D+ + G +E V SMP +
Sbjct: 352 DVLGRAGRLEEVYGVVKSMPMK 373
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 175/511 (34%), Positives = 269/511 (52%), Gaps = 36/511 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ ++KQ S L G P V +++ F A D + + RL ++N +
Sbjct: 14 ISELKQHHSQLVRLGLASRPEHVRRLLAFL-ARDPAGVPYAARLLAHHPDPHPALFNPLF 72
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
P A A ML P+++T +L A + A +++L +
Sbjct: 73 ASLP----PHHAAAFLALMLSLPLHPDHFTLPRLLPAAPLPLAAQLH----ALLLKLNFH 124
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLF---DMSVNRDVISWTSLINGYAKSGQISIARQMF 177
S+ N LL Y D A +LF + DV+SWT+++ G + G + AR++F
Sbjct: 125 SHAHSFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLF 184
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D MPE+N +SW+AMI+GYV+ F +ALE F+ M+ G N A+ AC G L
Sbjct: 185 DGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLA 244
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+GR +H +V+++GI +D L TA++DMY KCG +E A VF +P + + ++ +I GLA
Sbjct: 245 RGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLA 304
Query: 298 NHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGV 333
H + AIELF M+ E V P++ + + YGIEP +
Sbjct: 305 VHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKM 364
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDL GRAG+L+ AKKV+ +MP+EPD VLGAL AC++H D+DLG+ ++E
Sbjct: 365 EHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIE 424
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ G +VLL+N+ AS QW V KVRR M++ V K G S+IE+DG VCEF G
Sbjct: 425 LDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSL 484
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ +EI + + + ++ + D ++V
Sbjct: 485 CHAQEKEIFAAVKDMMRKIRLEGYMPDTSDV 515
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 253/463 (54%), Gaps = 56/463 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFI 94
G++ + ++F + WN +I G+A + + +F ++K+M+ + PN T +
Sbjct: 154 GEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGL 213
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+ AC ++ L +G H +++ DM + V
Sbjct: 214 IVACIESKNLKLGRAIHGYMMK------------------------------DMVLREGV 243
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+LIN Y K G + AR++FD++PEKN V W+++I GY Q+ E +E M L
Sbjct: 244 KLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLS 303
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ + G L+ACA +GA + G W+H + ++ GI D+ +GTA+IDMYAKCG I A
Sbjct: 304 NLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAA 362
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
VFD M R+V + +++SG A+H Q+ SAIELF M+ G P+
Sbjct: 363 RKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
+ M + Y I P V+HYGC+VDLLGRAG+L+ A+++++ M +EP+ V GA
Sbjct: 423 GLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGA 482
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL+AC +HG++++G+ +++ + G +V+L+N+YAS +++N V+ VR M + +
Sbjct: 483 LLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGI 542
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
K GCS+IE+ VV EFV ++ + EEI +L + K LK
Sbjct: 543 CKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLK 585
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 70/323 (21%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDV----ISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+L L TC + +++ S+ + T +IN + + A Q+F++ E +
Sbjct: 9 VLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPD 68
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRPNHAGIVGALTACAFLGALDQGR 240
++AMI Y A+ +N M+ C G + + + ACA A+++G+
Sbjct: 69 GFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFV---FKACASQFAVEKGK 125
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H + R G ELD L +++++ Y CG I A VFD +DV + +LI+G A
Sbjct: 126 EVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQG 185
Query: 301 QSASAIELFMRM-QLEGVVPNESM-----------------SEIYG-------IEPGVQH 335
+ +F M +++ V PNE I+G + GV+
Sbjct: 186 MVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKL 245
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMP----------------------------------I 361
L++L + G L+ A+K+ E+P +
Sbjct: 246 EAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNL 305
Query: 362 EPDNYVLGALLNACRVHGDVDLG 384
+PD + + +L+AC G +LG
Sbjct: 306 KPDRFTVSGVLSACAQMGAFNLG 328
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/444 (34%), Positives = 247/444 (55%), Gaps = 28/444 (6%)
Query: 22 AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
AV ++ + + + + + G +F ++R F W MI F + ++A A++ M
Sbjct: 205 AVSSMVALFARTGMVEEARG--VFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMRE 262
Query: 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141
+ + ++ ACA + + G +CH V+R G S V N L+H+Y++C +
Sbjct: 263 EGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVA 322
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
AR+LFD S + D SW S+I+GY K+G++ A+ +F+ MP+K+ VSWSAMI G VQ +
Sbjct: 323 ARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQS 382
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
EAL F+ M+ +P+ +V ++AC L AL+QG+ +H Y+ + + I+LGT++
Sbjct: 383 SEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSL 442
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-VPN 320
IDMY KCGC+E A VFD + + + ++I GLA + ++++F M+ G+ VP+
Sbjct: 443 IDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPS 502
Query: 321 ES------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
E M Y I P ++HYGC+VDLLGRAG + A+ ++
Sbjct: 503 EITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREAEDLI 562
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416
+ MP+ PD GALL AC H D ++G+ + LV+ H+G +LSNIYAS W
Sbjct: 563 QSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTMLSNIYASEGMWQ 622
Query: 417 GVEKVRRGMEDNEVRKVPGCSLIE 440
V+ +R M+ + V KV GCS++E
Sbjct: 623 CVKDLRGSMKQH-VAKVAGCSVVE 645
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 173/387 (44%), Gaps = 70/387 (18%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG-----DLSHGYRLFVCLQYRTTFIW 56
+ + +I + SG L D +A +++ F +++ L H +LF ++ F
Sbjct: 18 RHLLEIHAQFLASGLLADAYAASRLLLFTTSATAARLLPQPLHHSLQLFRLVRSPNAFTC 77
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
NT+IR + P F LY M + P+ YT + ACA G H+ ++
Sbjct: 78 NTLIRAALRQGLPHLCFPLYASMPAA---PDTYTHPLLAAACAARGDAREGRQVHSHAVK 134
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ ++ N L+H+Y+ C C+ AR++FD D +SW +++ Y + G + A +
Sbjct: 135 HGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVGV 194
Query: 177 FDKMPEKNAV-------------------------------SWSAMINGYVQVDLFKEAL 205
F +MPE++A +W+AMI+ + + DLF EAL
Sbjct: 195 FARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEAL 254
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
F+ M+ G+ + A +V + ACA + G H V R G+ + + A+I MY
Sbjct: 255 AVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMY 314
Query: 266 AKC-------------------------------GCIETACSVFDSMPNRDVFAYTSLIS 294
+ C G +E A ++F+ MP++D +++++I+
Sbjct: 315 SSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIA 374
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE 321
G ++QS+ A+ +F M+ + P+E
Sbjct: 375 GCVQNNQSSEALTVFDNMRAHEIKPDE 401
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G +GR +H++ ++G ++ L A++ MY+ CGC+ A VFD+ P D ++ +++
Sbjct: 120 GDAREGRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTIL 179
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
+ A+ +F RM P S + + +V L R GM+E A+
Sbjct: 180 ATYVRDGDVEQAVGVFARM------PERSAAAV----------SSMVALFARTGMVEEAR 223
Query: 354 KV 355
V
Sbjct: 224 GV 225
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 261/478 (54%), Gaps = 57/478 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +LF + + WN MI G+AE +A L+K+M++++ P+ T ++
Sbjct: 214 GYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVV 273
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA + + +G H+ + G+ S ++N L+ LY+ C
Sbjct: 274 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKC------------------- 314
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G++ A +F+ + K+ +SW+ +I GY ++L+KEAL F M G
Sbjct: 315 ------------GELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIIDMYAKCGCIET 273
RPN ++ L ACA LGA+D GRWIH Y+D+ L T++IDMYAKCG IE
Sbjct: 363 ERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEA 422
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A VF+S+ ++ + ++ ++I G A H ++ +A ++F RM+ G+ P++
Sbjct: 423 AHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSR 482
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+M++ Y I P ++HYGC++DLLG +G+ + A++++ M +EPD +
Sbjct: 483 SGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWC 542
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+LL AC++ G+V+LG+ ++L++ ++ G +VLLSNIYA+ +WN V K+R + D
Sbjct: 543 SLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKG 602
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F D +EV E
Sbjct: 603 MKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQE 660
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 252/464 (54%), Gaps = 25/464 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +GD+++ +LF + + WNT++ +A++ +A LY+ R D N ++F+
Sbjct: 140 AKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFA 199
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L C L + H QV+ G+ S + + ++ YA C M AR LFD + +
Sbjct: 200 GVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVK 259
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D+ +WT++++GYAK G ++ A ++F +MPEKN VSWSA+I+GY + L EAL++F M
Sbjct: 260 DIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMM 319
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G P L ACA + AL G+ +H Y+ R + I+ +++IDMY+KCG +E
Sbjct: 320 KFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLE 379
Query: 273 TACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
+C VF M N+ DV + ++IS LA + A+++F M G+ P+
Sbjct: 380 ASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSAC 439
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
++M+ +G+ P +HY CL+DLLGRAG + M +PD+ V
Sbjct: 440 SHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRV 499
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
ALL CR+H +++LG++ E ++E +V L+++YA +W VEKVR M++
Sbjct: 500 WSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDE 559
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKH 471
+RK G S I+V F++ +R + L EEI LLL + +H
Sbjct: 560 KFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARH 603
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 139/298 (46%), Gaps = 14/298 (4%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMS 149
F +LR CA G H + G++ V N L+ +Y C ARK+FD
Sbjct: 65 FVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKM 124
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
R++ SW ++ GYAK G ++ AR++FD+M EK+ VSW+ ++ Y + F EA+ +
Sbjct: 125 SVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYR 184
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
+ N G L C L L + +H V G +++L ++I+D YAKCG
Sbjct: 185 DFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCG 244
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329
+ A ++FD M +D+ A+T+++SG A SA ELF +M + V ++ Y
Sbjct: 245 EMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYA- 303
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
+ LG + K + + I P+ Y + L AC + GK+
Sbjct: 304 ----------RNSLGHEALDYFTK--MMKFGINPEQYTFSSCLCACASIAALKHGKQV 349
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAI 261
EAL + + + G R V L CA G+ +H ++ G + I+ +
Sbjct: 45 EALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHL 104
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
I MY +CG A VFD M R+++++ +++G A +A +LF RM + VV
Sbjct: 105 IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWN 164
Query: 322 SMSEIYGIEPGVQHYGCLVDLLG 344
++ Y + GC + +G
Sbjct: 165 TIVLAYAKQ------GCFNEAIG 181
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 239/433 (55%), Gaps = 28/433 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLI 109
TT W + I +A + M S PN+ TF +L C D + + +
Sbjct: 26 TTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSNL 85
Query: 110 CHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +LG + ++ V ++ +Y+ + AR +FD + + ++W ++I+GY +SG
Sbjct: 86 LHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSG 145
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ A +MFDKMPE++ +SW+AMING+V+ +EAL F MQ+ G RP++ I+ AL
Sbjct: 146 QVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALN 205
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LGAL G W+H YV + ++ + ++ID+Y +CGC+E A VFD M R V +
Sbjct: 206 ACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVS 265
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+ S+I G A + + ++ F +MQ EG P+ ++M
Sbjct: 266 WNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMK 325
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDL 383
YGI P ++HYGCLVDL RAG LE A KV+ MP++P+ V+G+LL ACR HG + L
Sbjct: 326 RDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVL 385
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ ++ L + ++ +V+LSN+YA+ +W G ++RR M+ ++K PG S IE+D
Sbjct: 386 AERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDD 445
Query: 444 VVCEFVSGERTNV 456
F++G+ +V
Sbjct: 446 CTHVFMAGDSAHV 458
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 142/326 (43%), Gaps = 45/326 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + ++F + R W MI GF +K +A +++M S P+ L
Sbjct: 145 GQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAAL 204
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H V+ +++ V N L+ LY C C++ AR++FD R V+
Sbjct: 205 NACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 264
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G NA E+L +F MQ G
Sbjct: 265 SWNSVIVGFAANG---------------NA----------------HESLVYFRKMQEEG 293
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F+P+ GALTAC+ +G +++G R+ GI I ++D+Y++ G +E A
Sbjct: 294 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDA 353
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
V +SMP + + SL++ H + E M+ + V + S
Sbjct: 354 LKVIESMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHS----------- 402
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A ++ R+M
Sbjct: 403 -NYVILSNMYAADGKWEGASQMRRKM 427
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL- 233
Q ++ + VSW++ I + EA + F+ M+L G PNH + L+ C
Sbjct: 17 QRLNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFP 76
Query: 234 -GALDQGRWIHAYVDRNGIE-LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
G+ +H Y + G++ +++GTAII MY+K G ++ A VFD M + + + +
Sbjct: 77 SGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNT 136
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
+I G Q +A+++F +M E + + +++ + G E
Sbjct: 137 MIDGYMRSGQVDNAVKMFDKMP----------------ERDLISWTAMINGFVKKGFHEE 180
Query: 352 AKKVVREMPI---EPDNYVLGALLNACRVHGDVDLG 384
A REM I PD + A LNAC G + G
Sbjct: 181 ALVWFREMQISGVRPDYVAIIAALNACTNLGALSFG 216
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 244/476 (51%), Gaps = 50/476 (10%)
Query: 2 KQIKQIQSHLTVSGTL-WDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+++KQ+ + VSG L + P +++ + + S I + + +F + F++NTM
Sbjct: 27 QEVKQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQI---YYAFSIFERIPSPDVFVYNTM 83
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IRG +N+T++F+L+AC+ F G H Q+I+ G
Sbjct: 84 IRGLTM---------------------DNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGI 122
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ + L+H+Y +D A ++ + ++ ++I+GY G++ AR+MFD
Sbjct: 123 VPDTHIHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDD 182
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M K+A SWSA+I GY + + EAL F M + PN A +V L+AC LG L QG
Sbjct: 183 MAAKDAASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQG 242
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIHAY+D+ + + L TA+IDMYAK G IE +F M RDV + +IS A H
Sbjct: 243 RWIHAYIDKTRVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIH 302
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
++ +LF M +G+ PN+ M +GI+P ++H
Sbjct: 303 GHASKCFQLFDEMLADGIRPNKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEH 362
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG+L A++++ MP +P++ + G+LL ACR H D+ G E+L+E
Sbjct: 363 YGCMVDLLGRAGLLADAEQLILSMPKQPNSIIWGSLLGACRTHNDLKRGTWAFENLMELE 422
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
H L ++A+ + K+R+ + + E+ G S IEV+G V EF G
Sbjct: 423 PTSGDRHKLAGLMFANAGEKEEAAKIRKMIHEKEMVTTCGSSFIEVEGAVHEFTVG 478
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/561 (31%), Positives = 268/561 (47%), Gaps = 89/561 (15%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++++Q+ + G ++ + ++ S + ++H LF +WN + RG+
Sbjct: 83 LQKVQAQIITHGFQYNGYVAPNVV--TSWVGLKQMAHARHLFDHFPDPKVELWNAISRGY 140
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL---------------------------- 95
+ L+ +M D PN +TF +L
Sbjct: 141 FHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQ 200
Query: 96 -------------RACADTSCLFVGLI----------------CHA-----QVIRLGWES 121
RA LFVG++ C+ ++ L E
Sbjct: 201 FVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPER 260
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N ++ Y M ARKLFD RD +SW +++NGYA +G + Q+F++MP
Sbjct: 261 DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMP 320
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR-PNHAGIVGALTACAFLGALDQGR 240
E+N SW+ +I GY F E L F M + G PN A +V L+ACA LGALD G+
Sbjct: 321 ERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGK 380
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H Y G + I +G A+IDMY+KCG IE A VF+SM +D+ + S+I GLA H
Sbjct: 381 WVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHG 440
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
A A+ LF +M++ G P+ SM Y I P ++HY
Sbjct: 441 CGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHY 500
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDL GRAG+L+ A + V+ MP+E D + ALL ACR++ ++DL + ++ L+
Sbjct: 501 GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEP 560
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ +VLLSNIY +W V +++ M D +K+PGCSLIEV+ V EF S + +
Sbjct: 561 KNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHS 620
Query: 457 LMEEIVLLLFGIDKHLKSLCF 477
+EI +L G+ K L+S +
Sbjct: 621 QSKEIYGVLKGLMKLLRSFGY 641
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/561 (31%), Positives = 268/561 (47%), Gaps = 89/561 (15%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++++Q+ + G ++ + ++ S + ++H LF +WN + RG+
Sbjct: 41 LQKVQAQIITHGFQYNGYVAPNVV--TSWVGLKQMAHARHLFDHFPDPKVELWNAISRGY 98
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL---------------------------- 95
+ L+ +M D PN +TF +L
Sbjct: 99 FHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQ 158
Query: 96 -------------RACADTSCLFVGLI----------------CHA-----QVIRLGWES 121
RA LFVG++ C+ ++ L E
Sbjct: 159 FVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPER 218
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ N ++ Y M ARKLFD RD +SW +++NGYA +G + Q+F++MP
Sbjct: 219 DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMP 278
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR-PNHAGIVGALTACAFLGALDQGR 240
E+N SW+ +I GY F E L F M + G PN A +V L+ACA LGALD G+
Sbjct: 279 ERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGK 338
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H Y G + I +G A+IDMY+KCG IE A VF+SM +D+ + S+I GLA H
Sbjct: 339 WVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHG 398
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
A A+ LF +M++ G P+ SM Y I P ++HY
Sbjct: 399 CGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHY 458
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDL GRAG+L+ A + V+ MP+E D + ALL ACR++ ++DL + ++ L+
Sbjct: 459 GCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEP 518
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ +VLLSNIY +W V +++ M D +K+PGCSLIEV+ V EF S + +
Sbjct: 519 KNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHS 578
Query: 457 LMEEIVLLLFGIDKHLKSLCF 477
+EI +L G+ K L+S +
Sbjct: 579 QSKEIYGVLKGLMKLLRSFGY 599
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 255/483 (52%), Gaps = 61/483 (12%)
Query: 31 SASDIGDLSHGYRLFVCLQY----RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP 86
S D+ S R ++ L Y R+ W MI G+ N+ + L+ +M+ + P
Sbjct: 171 SERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFP 230
Query: 87 NNYT-FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
N+ T S I+ SC FVG ++LG + ++L R
Sbjct: 231 NDITMLSLII------SCGFVG------AVQLGKRLHAYIL----------------RNG 262
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F MS+ T+L++ Y K G+I AR +FD M K+ ++W+AMI+ Y Q + A
Sbjct: 263 FGMSLALA----TALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAF 318
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
+ F M+ G RPN +V L+ CA GALD G+W HAY+D+ G+E+D+IL TA+IDMY
Sbjct: 319 QLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMY 378
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----- 320
AKCG I A +F +RD+ + +++G H A++LF M+ GV PN
Sbjct: 379 AKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFI 438
Query: 321 -------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
E M +G+ P V+HYGC+VDLLGRAG+L+ A K++ MP+
Sbjct: 439 GALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV 498
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
P+ + GA+L AC++H + ++G+ L+ + G VL+SNIYA+ +WN V +
Sbjct: 499 TPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGM 558
Query: 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDG 481
R+ ++D ++K PG S IEV+G+V +F G+ + L+E+I +L + K LK + D
Sbjct: 559 RKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDT 618
Query: 482 NEV 484
+ V
Sbjct: 619 SVV 621
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 146/271 (53%), Gaps = 9/271 (3%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
RT F + ++ P A Y M + D +++ +L+AC+ S +G
Sbjct: 72 RTHFNHAQQVSFSPFESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEI 131
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H ++ G S FV+N L+ +Y+ C + AR LFD RDV+SW+++I Y
Sbjct: 132 HGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI----- 186
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
+F +++ VSW+AMI GY++ + +E F M PN ++ + +C
Sbjct: 187 ----TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISC 242
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
F+GA+ G+ +HAY+ RNG + + L TA++DMY KCG I +A ++FDSM N+DV +T
Sbjct: 243 GFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWT 302
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE 321
++IS A + A +LF++M+ GV PNE
Sbjct: 303 AMISAYAQANCIDYAFQLFVQMRDNGVRPNE 333
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/445 (34%), Positives = 241/445 (54%), Gaps = 86/445 (19%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M+R PN+YTF +++ C + + G HA++++ G+E FV N L+H+Y+ C
Sbjct: 1 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN-------------- 184
+ AR +F++ D+++W S+I+GY K+G+I AR++F++MPE++
Sbjct: 61 IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN 120
Query: 185 -----------------AVSWSAMINGYVQVDLFKEALEHFNYM---------------- 211
VSW+ MI+GY QV + A E FN+M
Sbjct: 121 GDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180
Query: 212 -------------QLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDII 256
++ G PN A +V LTACA LG LD+G+WIH+Y+ N IE D++
Sbjct: 181 RIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVL 240
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L TA++ MYAKCG ++ A VFD M NR V ++ S+I G H Q+ A+E+F+ M+ G
Sbjct: 241 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG 300
Query: 317 VVPNES------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
+PN++ M Y IEP V+HYGC+VDLLGRAG+++
Sbjct: 301 PMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDL 360
Query: 353 KKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412
++++R+MP+E + GALL+ACR H + +L + + L+E G ++LLSNIYA+
Sbjct: 361 EELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAE 420
Query: 413 EQWNGVEKVRRGMEDNEVRKVPGCS 437
+W+ VE VR+ M++ + K G S
Sbjct: 421 GKWDDVEIVRKMMKERGLTKTTGLS 445
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 129/331 (38%), Gaps = 67/331 (20%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAE-KNEPIKA-----------------FALYK 77
GD++ LF + +R WN MI G+A+ +N I ALY
Sbjct: 121 GDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180
Query: 78 QM------------LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
++ + + +PN T +L ACA L G H+ + D +
Sbjct: 181 RIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVL 240
Query: 126 LN-GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L+ LL +YA C MD AR +FD NR V+SW S+I GY GQ A +MF M ++
Sbjct: 241 LSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKR- 299
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
G PN A + L+ACA G + +G W
Sbjct: 300 ------------------------------GPMPNDATFICVLSACAHSGMILEGWWYFD 329
Query: 245 YVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA-YTSLISGLANHDQS 302
+ R IE + ++D+ + G ++ + MP A + +L+S H S
Sbjct: 330 LMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNS 389
Query: 303 ASA---IELFMRMQLEGVVPNESMSEIYGIE 330
A + + ++ + P +S IY E
Sbjct: 390 ELAEIVAKRLIELEPRDIGPYLLLSNIYAAE 420
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 240/442 (54%), Gaps = 26/442 (5%)
Query: 69 PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG 128
P A L+ +LRS P+ ++ L CA H + G S+ V NG
Sbjct: 56 PHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNG 115
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
L+H Y+ C + ARK+FD D+I+W L+ GYA+ R+ F +MP +++VSW
Sbjct: 116 LIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSW 175
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
+ +I V +EA+ F M +P+ +V ++A A+LGAL QG W HAYV
Sbjct: 176 NTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVC 235
Query: 248 RNGIELDIILGTAIIDMYAKCGCIETACSVFD-SMPNRDVFAYTSLISGLANHDQSASAI 306
R IE+D L +A+I+MY+KCG IE A VF+ S R V + ++++G S A+
Sbjct: 236 RKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERAL 295
Query: 307 ELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDL 342
ELF RM+ G VPN E M+ IEP + HYGC+VDL
Sbjct: 296 ELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDL 355
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402
RAG+ E A+++++ MP+EPD V AL+ ACR + + +LGK+ L+E + + +
Sbjct: 356 FCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGY 415
Query: 403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIV 462
VLLSNIYA W GV KVR+ M + V+KVPG S IE+DGV+ EF+SG++++ ++
Sbjct: 416 VLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVY 475
Query: 463 LLLFGIDKHLKSLCFFDDGNEV 484
+L I + LK + D ++V
Sbjct: 476 EMLSEICQQLKVAGYAPDTSQV 497
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 37/258 (14%)
Query: 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLP 86
G+ D G L F + R + WNT+I E +A A++++ML S + P
Sbjct: 150 GYAQGRDTGALRE---FFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQP 206
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
+ T ++ A A L GL HA V R E + + + L+++Y+ C ++ A +F
Sbjct: 207 DRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVF 266
Query: 147 DMSVN-RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
+ S R V +W +++ G+ SG + AL
Sbjct: 267 ENSCALRSVDTWNAMLAGFTASG-------------------------------CSERAL 295
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDM 264
E F M+ GF PN L AC+ G +++G + + + IE DI ++D+
Sbjct: 296 ELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDL 355
Query: 265 YAKCGCIETACSVFDSMP 282
+ + G E A + MP
Sbjct: 356 FCRAGLFEKAEEMIQMMP 373
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 40/179 (22%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R+ WN M+ GF +A L+ +M S F+PN TF+ +L AC+
Sbjct: 273 RSVDTWNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACS----------- 321
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H + G ++ + N S+ D+ + +++ + ++G
Sbjct: 322 HGGFVEEGIGYFERMTN-------------------SSSIEPDIAHYGCMVDLFCRAGLF 362
Query: 171 SIARQMFDKMP-EKNAVSWSAMING---YVQVDLFKEALEHFNYMQLCGFRPN-HAGIV 224
A +M MP E +A W A++ Y +L K+A +L PN HAG V
Sbjct: 363 EKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGH-----RLIEAAPNDHAGYV 416
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/477 (32%), Positives = 252/477 (52%), Gaps = 57/477 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
++++ QIQ++ + + D V K+I FC+ S +S+ LF + I+N+M
Sbjct: 42 LRELMQIQAY-AIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSM 100
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG++ P++ F+L+ ++L LP+NYTF +L+ACA L G H ++LG
Sbjct: 101 ARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGL 160
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V L+++Y C +D A R +FD+
Sbjct: 161 DDNVYVCPTLINMYTECEDVDSA-------------------------------RCVFDR 189
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ E V ++AMI GY + + EAL F MQ +PN ++ L++CA LG+LD G
Sbjct: 190 IVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WIH Y ++ + + TA+IDM+AKCG ++ A S+F+ M +D A++++I ANH
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
++ ++ +F RM+ E V P+E M +GI P ++H
Sbjct: 310 GKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKH 369
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YG +VDLL RAG LE A + + ++PI P + LL AC H ++DL ++ E + E
Sbjct: 370 YGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELD 429
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
H G +V+LSN+YA ++W V+ +R+ M+D + KVPGCS IEV+ VV EF SG+
Sbjct: 430 DSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGD 486
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 259/495 (52%), Gaps = 50/495 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD--LSHGYRLFVCLQYRTTFIWNT 58
+K KQI +HL V+G PF GK++ C+ S I D L++ RLF TF++NT
Sbjct: 23 LKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVS-ISDHVLNYSLRLFHHFPNPDTFMYNT 81
Query: 59 MIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTSC-LFVGLICHAQVIR 116
+IR + + P+ + + Q+LR LP++++F+F L+ A+ C G+ H+ R
Sbjct: 82 LIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQGIQLHSHAFR 141
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI---- 172
G++ + FV L+ +YA C C + ARK+FD +V++W +++ + G +
Sbjct: 142 HGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVS 201
Query: 173 ---ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+F +M ++ SWS MI G+ + F +A F + RP+ + G L+A
Sbjct: 202 FGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSA 261
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA GA + G+ +H ++++ G + + A+ID Y+KCG ++ A VF+
Sbjct: 262 CAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFNI--------- 312
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
LA H ++ AI +F M+ GV P+ M
Sbjct: 313 -----SLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRN 367
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
YGIEP ++HYGC+VDL GRA L+ A + +R+MPI P+ + LL AC +HG+++L +
Sbjct: 368 FYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAE 427
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
L E ++ G HVLLSN+YA +W V +RR M + ++K+PG S+IE+D V
Sbjct: 428 LVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVN 487
Query: 446 CEFVSGERTNVLMEE 460
FV+GE+ N + +E
Sbjct: 488 YGFVAGEKPNEVTKE 502
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 233/404 (57%), Gaps = 32/404 (7%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
++ F + S GDL++ RLF L + TF +NT+IRG+A+ + P + L QM ++
Sbjct: 1 MLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVD 60
Query: 86 PNNYTFSFILRACADTSC-----LFVGLIC---HAQVIRLGWESYDFVLNGLLHLYATCN 137
P+ +TF+F+++A + L + + C H V++LG+ S+ FV N L+HLYA
Sbjct: 61 PDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARG 120
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
A ++FD +V DV+SW+ L+ + ++G++ AR +FD+MPE++ VSW+ M++ Y Q
Sbjct: 121 NPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQ 180
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
+EALE + M G RP+ +V ++AC LG L G +H+Y+D NG + L
Sbjct: 181 AKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSL 240
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
A+IDMYAKCGC++ A VF+SM + + + S+IS AN+ A LF RM GV
Sbjct: 241 CNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGV 300
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
P+ ESM +GIE ++HYGC+V++LG+AG LE A
Sbjct: 301 APDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEEAF 360
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+++ MP+ ++ V G LL ACR HGDV +G+ V+ L+E LD
Sbjct: 361 ELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVVKKLLELKLD 404
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 166/485 (34%), Positives = 252/485 (51%), Gaps = 60/485 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G L RLF + + WN MI G+ + +A + +M ++ L
Sbjct: 204 ITGYVSQ---GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL 260
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
PN T +L AC T +G + V G+ S + N L+ +Y C
Sbjct: 261 PNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKC--------- 311
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G+ IAR++FD + EK+ +SW+ MI GY + L++EAL
Sbjct: 312 ----------------------GETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEAL 349
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDM 264
F M +PN +G L ACA LGALD G+W+HAY+D+N + L T++IDM
Sbjct: 350 ALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDM 409
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV-PNE-- 321
YAKCGCIE A VF SM +R++ ++ +++SG A H + A+ LF M +G+ P++
Sbjct: 410 YAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDIT 469
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM + YGI P +QHYGC++DLL RA E A+ +++ M
Sbjct: 470 FVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNM 529
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + G+LL+AC+ HG V+ G+ E L + ++ G VLLSNIYA +W+ V
Sbjct: 530 EMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVA 589
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
++R + D ++KVPGC+ IE+DG V EF+ G++ + I +L +DK L+ F
Sbjct: 590 RIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVP 649
Query: 480 DGNEV 484
+ +EV
Sbjct: 650 NTSEV 654
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 229/495 (46%), Gaps = 74/495 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR---TTFIWN 57
+ KQI S + +G F K+I FC+ S GDLS+ LF Q FIWN
Sbjct: 41 INTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWN 100
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
++IRG++ + P+ + L+ +ML PN++TF F+ ++C G HA ++L
Sbjct: 101 SLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKL 160
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
V ++H+YA+ MD AR +FD S RD +S+T+LI GY G + AR++F
Sbjct: 161 ALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLF 220
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D++P K+ VSW+AMI+GYVQ F+EA+ F MQ PN + +V L+AC + +
Sbjct: 221 DEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE 280
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+WI ++V NG ++ L A+IDMY KCG + A +FD + +DV ++ ++I G +
Sbjct: 281 LGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYS 340
Query: 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGI--------------------------EP 331
A+ LF M V PN+ GI
Sbjct: 341 YLSLYEEALALFEVMLRSNVKPNDVT--FLGILHACACLGALDLGKWVHAYIDKNLRNSS 398
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP------------------------------- 360
+ L+D+ + G +EAA++V R M
Sbjct: 399 NASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMV 458
Query: 361 ----IEPDNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGVHVLLSNIYAS 411
PD+ +L+AC G VDLG + S+++ L H G + ++ A
Sbjct: 459 NKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMI---DLLAR 515
Query: 412 TEQWNGVEKVRRGME 426
E++ E + + ME
Sbjct: 516 AEKFEEAEILMKNME 530
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/401 (19%), Positives = 150/401 (37%), Gaps = 101/401 (25%)
Query: 130 LHLYATCNCMDPARKLFDM----SVNRDVISWTSLIN--GYAKSGQISIARQMFDKMPEK 183
L+L C ++ +++ + +N V + LI+ + SG +S A +F++ +
Sbjct: 32 LNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQH 91
Query: 184 ---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
N W+++I GY +L F+ M G +PN +C A +G+
Sbjct: 92 HKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGK 151
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKC-------------------------------G 269
+HA+ + + + + T++I MYA G
Sbjct: 152 QLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQG 211
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY-- 327
C++ A +FD +P +DV ++ ++ISG + AI F MQ V+PN+S +
Sbjct: 212 CLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLS 271
Query: 328 ---------------------GIEPGVQHYGCLVDLLGRAGMLEAAK------------- 353
G +Q L+D+ + G + A+
Sbjct: 272 ACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVIS 331
Query: 354 ---------------------KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+V+ ++P++ +L+AC G +DLGK V + +
Sbjct: 332 WNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGK-WVHAYI 390
Query: 393 ERSLDHEGVHVL---LSNIYASTEQWNGVEKVRRGMEDNEV 430
+++L + L L ++YA E+V R M +
Sbjct: 391 DKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/468 (33%), Positives = 247/468 (52%), Gaps = 55/468 (11%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
C + G L +++F + + W +I G+ + +A +++++L + P+++
Sbjct: 155 CLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSF 214
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T +L AC L G H ++ +G
Sbjct: 215 TIVRVLSACTQLGDLNSGEWIHKCIMEMG------------------------------- 243
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+ R+V TSL++ YAK G + AR +FD MPEK+ VSW AMI GY L KEA++ F
Sbjct: 244 MVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFL 303
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
MQ +P+ +VG L+ACA LGAL+ G W+ VDRN + +LGTA+ID+YAKCG
Sbjct: 304 QMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCG 363
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------- 320
+ A VF M +D + ++ISGLA + + LF +++ G+ P+
Sbjct: 364 SMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLC 423
Query: 321 ---------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
SM + + P ++HYGC+VDLLGRAG+L+ A +++R MP+E +
Sbjct: 424 GCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANA 483
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
V GALL ACR+H D L + ++ L+E + G +VLLSNIY++ +W+ KVR M
Sbjct: 484 IVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSM 543
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+ ++K PGCS IEVDG+V EF+ G++ + L E+I L + K +K
Sbjct: 544 NEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMK 591
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 186/373 (49%), Gaps = 55/373 (14%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
D D ++ LF ++ F+WNTMIRG + A Y M FLPNN+TF F
Sbjct: 58 DFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPF 117
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L+ACA L +G+ H V++ G++ D
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKGGFDC-------------------------------D 146
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V TSL+ YAK G + A ++FD +P+KN VSW+A+I+GY+ V F+EA++ F +
Sbjct: 147 VFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLE 206
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P+ IV L+AC LG L+ G WIH + G+ ++ +GT+++DMYAKCG +E
Sbjct: 207 MNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEK 266
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSE 325
A SVFD MP +D+ ++ ++I G A + AI+LF++MQ E V P+ + +
Sbjct: 267 ARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACAR 326
Query: 326 IYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
+ +E G G L+DL + G + A +V + M E D V A
Sbjct: 327 LGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNA 385
Query: 371 LLNACRVHGDVDL 383
+++ ++G V +
Sbjct: 386 IISGLAMNGYVKI 398
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 45/259 (17%)
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
R +F ++ + N W+ MI G V D F +A+E + M+ GF PN+ L ACA
Sbjct: 65 TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L L G IH V + G + D+ + T+++ +YAKCG +E A VFD +P+++V ++T++
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
ISG + AI++F R+
Sbjct: 185 ISGYIGVGKFREAIDMFRRLL--------------------------------------- 205
Query: 353 KKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL-DHEGVHVLLSNIYAS 411
EM + PD++ + +L+AC GD++ G+ + ++E + + V L ++YA
Sbjct: 206 -----EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAK 260
Query: 412 TEQWNGVEKVRRGMEDNEV 430
V GM + ++
Sbjct: 261 CGNMEKARSVFDGMPEKDI 279
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 174/551 (31%), Positives = 275/551 (49%), Gaps = 96/551 (17%)
Query: 19 DPFAVGKIIGFCSA--------SDIGDLSHGYRLFVCLQYRT-TFIWNTMIRGFAEKNEP 69
+P K I CS+ + + H R+F +R F+ N+MI+ + +
Sbjct: 9 NPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQY 68
Query: 70 IKAFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG 128
++FALY+ + R + F P+++TFS + ++CA ++ G H+ V+ +G+ +
Sbjct: 69 SESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATA 128
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS----------------- 171
L+ +YA MD ARKLFD ++R +SWT+LI GY +SG +
Sbjct: 129 LVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAF 188
Query: 172 --------------IARQMFDKMPE-------------------------------KNAV 186
AR++FD+MPE KN
Sbjct: 189 NTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLF 248
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQ-LCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
SW+AMI+GY Q EAL+ F+ MQ P+ IV L A A LGALD G W+H +
Sbjct: 249 SWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRF 308
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V R ++ +GTA+IDMYAKCG I + VFD+MP ++ ++ +LI+ A + ++ A
Sbjct: 309 VRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEA 368
Query: 306 IELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYGCLVDL 342
+ LFM M +G +PNE E +G+ P ++HYGC+VDL
Sbjct: 369 LGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDL 428
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402
LGRAG L+ A+K++ MP E + +L + L AC DV + ++ ++ ++G +
Sbjct: 429 LGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNY 488
Query: 403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIV 462
++L N+YA+ ++W ++V+ M N V+K GCS IEVD V EFV+G+R + E I
Sbjct: 489 IMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIH 548
Query: 463 LLLFGIDKHLK 473
+L + H+K
Sbjct: 549 SVLGQLWVHMK 559
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 252/464 (54%), Gaps = 25/464 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +GD+++ +LF + + WNT++ +A++ +A LY+ R D N ++F+
Sbjct: 140 AKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFA 199
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L C L + H QV+ G+ S + + ++ Y+ C M AR LFD + +
Sbjct: 200 GVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVK 259
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D+ +WT++++GYAK G ++ A ++F +MPEKN VSWSA+I+GY + L EAL++F M
Sbjct: 260 DIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMM 319
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G P L ACA + AL G+ +H Y+ R + I+ +++IDMY+KCG +E
Sbjct: 320 KFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLE 379
Query: 273 TACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
+C VF M N+ DV + ++IS LA + A+++F M G+ P+
Sbjct: 380 ASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSAC 439
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
++M+ +G+ P +HY CL+DLLGRAG + M +PD+ V
Sbjct: 440 SHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRV 499
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
ALL CR+H +++LG++ E ++E +V L+++YA +W VEKVR M++
Sbjct: 500 WSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDE 559
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKH 471
+RK G S I+V F++ +R + L EEI LLL + +H
Sbjct: 560 KFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARH 603
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 14/298 (4%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMS 149
F +LR CA G H + G++ V N L+ +Y C ARK+FD
Sbjct: 65 FVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKM 124
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
R++ SW ++ GYAK G ++ AR++FD+M EK+ VSW+ ++ Y + F EA+ +
Sbjct: 125 SVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYR 184
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
+ N G L C L L + +H V G +++L ++I+D Y+KCG
Sbjct: 185 DFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCG 244
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329
+ A ++FD M +D+ A+T+++SG A SA ELF +M + V ++ Y
Sbjct: 245 EMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYA- 303
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
+ LG + K + + I P+ Y + L AC + GK+
Sbjct: 304 ----------RNSLGHEALDYFTK--MMKFGINPEQYTFSSCLCACASIAALKHGKQV 349
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 68/301 (22%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ + V+G L + I+ + S G++ LF + + W T++ G+A
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVD--AYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYA 272
Query: 65 ----------------EKNEPIKAFAL----------------YKQMLRSDFLPNNYTFS 92
EKN P+ AL + +M++ P YTFS
Sbjct: 273 KWGDMNSASELFHQMPEKN-PVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFS 331
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L ACA + L G H +IR + V++ L+ +Y+ C ++ + +F + N+
Sbjct: 332 SCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNK 391
Query: 153 -DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
DV+ W ++I+ A++G A QMF+ M E
Sbjct: 392 QDVVVWNTMISALAQNGHGEKAMQMFNDMVES---------------------------- 423
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
G +P+ + L+AC+ G + +G R+ A +G+ D +ID+ + GC
Sbjct: 424 ---GLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGC 480
Query: 271 I 271
Sbjct: 481 F 481
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAI 261
EAL + + + G R V L CA G+ +H ++ G + I+ +
Sbjct: 45 EALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHL 104
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
I MY +CG A VFD M R+++++ +++G A +A +LF RM + VV
Sbjct: 105 IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWN 164
Query: 322 SMSEIYGIEPGVQHYGCLVDLLG 344
++ Y + GC + +G
Sbjct: 165 TIVLAYAKQ------GCFNEAIG 181
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/405 (35%), Positives = 234/405 (57%), Gaps = 25/405 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++K+I + L G D K++ F + S DL + Y+L + + TTF WNT+I
Sbjct: 26 MFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLI 85
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R F+ P + ++ +ML++ P+ T+ F+++A + +G+ H +++ G E
Sbjct: 86 RAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHE 145
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
F+ N L+H+YA+C + ARK+FD +++++W ++++GYAK G +++AR++F+ M
Sbjct: 146 IDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLM 205
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PEK+ VSWS++I+GYV+ ++ EA+ F M G N +V AL ACA LGAL+ GR
Sbjct: 206 PEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGR 265
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD--SMPNRDVFAYTSLISGLAN 298
+H Y+ N + L I+L T+++DMYAKCG I A +VF S+ DV + ++I GLA
Sbjct: 266 MMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLAT 325
Query: 299 HDQSASAIELFMRMQLEGVVPNESMS-----------------------EIYGIEPGVQH 335
H A+ LF M++ G+VP+E +G+ P V+H
Sbjct: 326 HGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEH 385
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
Y C+VD L RAG + A + + +MP++P + +LGALL+ C HG+
Sbjct: 386 YACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGN 430
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 241/419 (57%), Gaps = 35/419 (8%)
Query: 98 CADTSCLFV------GLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSV 150
C T+ F+ G + A+ + G D V N ++H YA + A++LF+ +
Sbjct: 45 CTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVL 104
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
++WTS++ G+ ++G + AR++F++MPE++ VSW+AMI+G V L EAL F +
Sbjct: 105 APTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRW 164
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M GF PN +V L+AC GAL+ G+W+H +V++ + D LGTA++DMYAKCG
Sbjct: 165 MMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGA 224
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV-PNE-------- 321
+E A VF + R+ + ++I+GLA + SA A+++F +M+L G V P+E
Sbjct: 225 VELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLL 284
Query: 322 ----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
++ + YG+E ++HY C+VDLL R+G L+ A K++ EMP++PD
Sbjct: 285 ACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDV 344
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
V ALL CR+H +V + + + E G HVLLSN+YA+ +WNGVE VRR M
Sbjct: 345 VVWRALLGGCRLHKNVKMAENVIS---EMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTM 401
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ K+PGCS +E+DG + EF+SG++++ ++I L I ++ + + EV
Sbjct: 402 RSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEV 460
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 144/342 (42%), Gaps = 54/342 (15%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ GFC A GD+ R+F + R WN MI G P++A L++ M+ F+
Sbjct: 115 VAGFCRA---GDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV 171
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQV--IRLGWESYDFVLNGLLHLYATCNCMDPAR 143
PN T +L AC L G H V RL W+ +F+ L+ +YA C ++ A
Sbjct: 172 PNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWD--EFLGTALVDMYAKCGAVELAL 229
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
++F R+ +W ++ING A +G + A MF +M +NG V
Sbjct: 230 EVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQME----------LNGTVA------ 273
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV--DRNGIELDIILGTAI 261
P+ VG L AC+ G +D G+ H Y + G+EL + +
Sbjct: 274 --------------PDEVTFVGVLLACSHAGFVDAGK-EHFYTIPQKYGVELILEHYACM 318
Query: 262 IDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+D+ A+ G ++ A + MP + DV + +L+ G H A + M+ +
Sbjct: 319 VDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEMEATCSGDH 378
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
+S +Y +GR +E ++ +R IE
Sbjct: 379 VLLSNLYAA-------------VGRWNGVEDVRRTMRSKGIE 407
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 161/512 (31%), Positives = 268/512 (52%), Gaps = 30/512 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K Q+ +H+ + G K++ F ++S GD+ +F + ++ ++N+MI
Sbjct: 86 LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASS--GDIDSSVSVFNGIGEPSSLLFNSMI 143
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +A + A Y M F + +TF F+L++ + +++G H ++R+G +
Sbjct: 144 RAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQ 203
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V L+ LY C ++ A K+FD RDV SW +L+ GY KSG I A +F++M
Sbjct: 204 FDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERM 263
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYM--QLCGFRPNHAGIVGALTACAFLGALDQ 238
P +N VSW+ MI+GY Q L ++AL F+ M + G RPN I+ L ACA L L++
Sbjct: 264 PWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLER 323
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGL 296
GR IH R G+ + + A+ MYAKCG + A + FD + +++ A+ ++I+
Sbjct: 324 GRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAY 383
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
A++ A+ F M G+ P++ MS Y I P
Sbjct: 384 ASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPR 443
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
V+HY C+ DLLGRAG L A K+V EMP+ + G+LL ACR H ++++ + L
Sbjct: 444 VEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLF 503
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
++ G +VLLSN+YA +W V+K+R ++ +K PGCS IE++G F+ G+
Sbjct: 504 VLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGD 563
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++ +EI + L + + +K+ +F D + V
Sbjct: 564 TSHPQGKEIYMFLEALPEKMKAAGYFPDTSYV 595
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L L G +HA++ G++ ++G+ ++ YA G I+++ SVF+ + + S+
Sbjct: 83 LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSM 142
Query: 293 ISGLANHDQSASAIELFMRMQLEG 316
I A + + + + M G
Sbjct: 143 IRAYARYGFAERTVATYFSMHSWG 166
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 167/501 (33%), Positives = 273/501 (54%), Gaps = 33/501 (6%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q+ +H+ SG + F V ++ GD + R+F R + +NT+I G
Sbjct: 101 QVHTHVFKSGFESNVFVVNALLQVYFV--FGDARNACRVFDESPVRDSVSYNTVINGLVR 158
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR-LG-WESYD 123
+ ++ +M P+ YTF +L AC+ +G + H V R LG + +
Sbjct: 159 AGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENE 218
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRD-VISWTSLINGYAKSGQISIARQMFDKMPE 182
++N L+ +YA C C++ A ++ + V +WTSL++ YA G++ +AR++FD+M E
Sbjct: 219 LLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGE 278
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ VSW+AMI+GY F+EALE F ++ G P+ +V AL+ACA LGAL+ GR I
Sbjct: 279 RDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELGRRI 338
Query: 243 HAYVDRNGIELDIILG--TAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLAN 298
H DR+ + G A++DMYAKCG IE A VF + + F Y S++SGLA+
Sbjct: 339 HHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAH 398
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H + A+ LF M+L G+ P+E SM YG+ P ++
Sbjct: 399 HGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFESMLSEYGVNPQME 458
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLLGRAG L A +++ MP + + + ALL+AC+V GDV+L + + L+
Sbjct: 459 HYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIWRALLSACKVDGDVELARLASQELLAM 518
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
DH +V+LSN+ ++ + VRR +++ ++K PG S +E++G + +F++G+++
Sbjct: 519 ENDHGARYVMLSNMLTLMDKHDEAASVRRAIDNVGIQKPPGWSHVEMNGTLHKFLAGDKS 578
Query: 455 NVLMEEIVLLLFGIDKHLKSL 475
+ + +L ID LKS+
Sbjct: 579 HPEAKATEFMLRDIDMGLKSI 599
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 49/381 (12%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ V+G DPF + +I F +A++ L H + LF + F++N +IR F+ P
Sbjct: 1 MVVTGRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPH 60
Query: 71 KAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG 128
A +LYK+ML S P+ +TF F+L++CA S +GL H V + G+ES FV+N
Sbjct: 61 NALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNA 120
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
LL +Y A ++FD S RD +S+ ++ING ++G+ + ++F +M
Sbjct: 121 LLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMR------- 173
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
G+V+ P+ V L+AC+ L GR +H V R
Sbjct: 174 ----GGFVE--------------------PDEYTFVALLSACSLLEDRGIGRVVHGLVYR 209
Query: 249 N--GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD-VFAYTSLISGLANHDQSASA 305
+ +L A++DMYAKCGC+E A V + + V A+TSL+S A + A
Sbjct: 210 KLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVA 269
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
LF +M VV +M G H GC + L LE ++ +EPD
Sbjct: 270 RRLFDQMGERDVVSWTAMIS------GYCHAGCFQEALELFVELE-------DLGMEPDE 316
Query: 366 YVLGALLNACRVHGDVDLGKE 386
V+ A L+AC G ++LG+
Sbjct: 317 VVVVAALSACARLGALELGRR 337
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 237/469 (50%), Gaps = 56/469 (11%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q +H+ G D F +I S+ G G R+F + + W MI GF
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLIS--GYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVR 181
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+ ++A + +M RS N T +L+A A+ +R G + F
Sbjct: 182 NDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRK-----------AEDVRFGRSIHGFY 230
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
L C DV +SL++ Y K G A+++FD+MP +N
Sbjct: 231 LEA-----GRVRC--------------DVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNV 271
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V+W+A+I GYVQ F++ + F M PN + L+ACA +GAL +GR +H Y
Sbjct: 272 VTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
V +N IE++ +GT +ID YAKCGC+E A VF+ + ++V+ +T++I+G A H + A
Sbjct: 332 VIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGA 391
Query: 306 IELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVD 341
++LF M V PNE SM E + +EP HY C+VD
Sbjct: 392 VDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVD 451
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
L GR G+LE AK ++ MP+EP N V GAL +C +H D +LGK +++ H G
Sbjct: 452 LFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGR 511
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
+ LL+N+Y+ ++ W+ V +VR+ M+D +V K PGCS IEV G + EF++
Sbjct: 512 YTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIA 560
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 174/387 (44%), Gaps = 69/387 (17%)
Query: 23 VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK---NEPIKAFALYKQM 79
+ +++ C+A+ + RL +Q + +W++++ F+ + N + +F Y+QM
Sbjct: 39 LSRLLRRCTAAT--QFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRL-SFLSYRQM 95
Query: 80 LRSDFLPNNYTFSFILRAC---ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136
R+ +P+ +TF +L+A D + HA +++ G++S FV N L+ Y+ C
Sbjct: 96 RRNGVVPSRHTFPPLLKAVFKLRDAN----PFQFHAHILKFGFDSDLFVRNSLISGYSNC 151
Query: 137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV 196
+ ++FD + ++DV+SWT AMI+G+V
Sbjct: 152 GLFEFGSRVFDGTEDKDVVSWT-------------------------------AMIDGFV 180
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA-YVDRNGIELDI 255
+ D EA+ +F M+ G N +V L A + GR IH Y++ + D+
Sbjct: 181 RNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDV 240
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+G++++DMY KCGC + A VFD MP+R+V +T+LI+G + +F M
Sbjct: 241 FIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKS 300
Query: 316 GVVPNE-SMSEIYG--IEPGVQHYG--------------------CLVDLLGRAGMLEAA 352
V PNE ++S + G H G L+D + G LE A
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEA 360
Query: 353 KKVVREMPIEPDNYVLGALLNACRVHG 379
V + E + Y A++N HG
Sbjct: 361 ILVFERLR-EKNVYTWTAMINGFAAHG 386
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 236/440 (53%), Gaps = 36/440 (8%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
TT +WN +IRG+A + P KA Y M+ S P+ +T S +L ACA + G H
Sbjct: 5 TTTVWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVH 64
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
A V+ G+ S FV L+ YA ++ AR +FD R V+SW S++ GY +
Sbjct: 65 ATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFD 124
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
AR++FD MP +N VSW+ M+ G + ++AL F M+ + +V AL+ACA
Sbjct: 125 GARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACA 184
Query: 232 FLGALDQGRWIHAYVD-----RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
LG L GRWIH YV RN + + L A+I MYA CG + A VF MP +
Sbjct: 185 ELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKST 244
Query: 287 FAYTSLISGLANHDQSASAIELFMRM-----QLEGVVPNE-------------------- 321
++TS+I A A++LF M +++GV P+E
Sbjct: 245 VSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEGH 304
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
SM +GI P ++HYGC+VDLL RAG+L+ A+ ++ MP+ P++ + GALL CR+
Sbjct: 305 QIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGALLGGCRI 364
Query: 378 HGDVDLGKETVESLV-ERSLDH-EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
H + +L + LV E + D G VLLSNIYA ++W V VR+ M + V+K PG
Sbjct: 365 HRNSELASQVENKLVPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMGVKKPPG 424
Query: 436 CSLIEVDGVVCEFVSGERTN 455
S I+++GVV F++G+ T+
Sbjct: 425 RSWIQINGVVHNFIAGDMTH 444
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 35/290 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
D R+F + R W TM+ G A + +A L+ +M R+ + L
Sbjct: 121 ADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAAL 180
Query: 96 RACADTSCLFVGLICHAQV----IRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSV 150
ACA+ L +G H V + W+ L N L+H+YA+C + A ++F
Sbjct: 181 SACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMP 240
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ +SWTS+I +AK G G +DLFK L +
Sbjct: 241 RKSTVSWTSMIMAFAKQGL------------------------GKEALDLFKTMLS--DG 274
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCG 269
+++ G RP+ +G L AC+ G +D+G I A + GI I ++D+ ++ G
Sbjct: 275 VKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASMKHTWGISPSIEHYGCMVDLLSRAG 334
Query: 270 CIETACSVFDSMP-NRDVFAYTSLISGLANHDQS--ASAIELFMRMQLEG 316
++ A + ++MP N + + +L+ G H S AS +E + +L G
Sbjct: 335 LLDEARGLIETMPLNPNDAIWGALLGGCRIHRNSELASQVENKLVPELNG 384
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 13/206 (6%)
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M W+ +I GY + +A+E + +M P+ L+ACA G + +G
Sbjct: 1 MDNPTTTVWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEG 60
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+HA V G ++ + T++I YA G +E A VFD MP R V ++ S+++G
Sbjct: 61 EQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRC 120
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
A +F M VV +M GC + R +L + +R
Sbjct: 121 ADFDGARRVFDVMPCRNVVSWTTMVA-----------GCARNGKSRQALLLFGE--MRRA 167
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGK 385
+E D L A L+AC GD+ LG+
Sbjct: 168 CVELDQVALVAALSACAELGDLKLGR 193
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 243/452 (53%), Gaps = 61/452 (13%)
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
FLP +TF +L++CA + G H + ++ + +V N L+H Y+ C +D A
Sbjct: 72 FLPYMFTFPAVLKSCAKFMAVDEGRQVHGVIAKMDFVCDIYVENSLVHFYSVCGSLDDAS 131
Query: 144 KLFDMSVNRDVISWT----------------------------------SLINGYAKSGQ 169
++FD + RD +SWT +L++ Y K
Sbjct: 132 RVFDEMLVRDAVSWTGVIYPGIKGYLILGKGIHGLIIERGFGLGLEVSNALMDMYVKCES 191
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ +Q+FD++PEK+ VSW+++I G VQ KE LE F +Q G P+ + L+A
Sbjct: 192 LPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSVLSA 251
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
A GALD GR + Y+D I+ DI +GTA++DMYAKCGCIE A +F+ MP+++V +
Sbjct: 252 RASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTW 311
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESM-------------------------S 324
++++GLA H A++LF M EG+ PNE S
Sbjct: 312 NAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEGRRYFHWMKS 371
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ Y + P ++HYGC+VDLL RAG+L+ A ++ + MP+ PD ++GALL+ C+ +G+V+L
Sbjct: 372 QQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPDVRIMGALLSTCKANGNVELP 431
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+E ++ LVE GV+VLLSNI A ++W V ++RR M+ + K PG S+IEVDG
Sbjct: 432 REILDRLVEFDSRDSGVYVLLSNILAINQRWADVTRIRRLMKMG-IEKTPGSSVIEVDGK 490
Query: 445 VCEFVSGERTNVLMEEIVLLLFGI-DKHLKSL 475
E + G+ + I L L + D +KS
Sbjct: 491 AHEIIVGDLRYPQDKHIRLFLKSLSDTQIKSF 522
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 14/224 (6%)
Query: 70 IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLF----VGLICHAQVIRLGWESYDFV 125
+K +L ++ D LP S+ C C F + L C Q G E +
Sbjct: 187 VKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQ--SSGIEPDGII 244
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISW-----TSLINGYAKSGQISIARQMFDKM 180
L +L A+ +D R L ++ I W T++++ YAK G I +A Q+F+ M
Sbjct: 245 LTSVLSARASPGALDYGR-LVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVM 303
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P KN ++W+AM+NG ++AL+ F M G RPN + LTAC G + +GR
Sbjct: 304 PHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEGR 363
Query: 241 WIHAYVDRNGIELDIILGT--AIIDMYAKCGCIETACSVFDSMP 282
++ L L ++D+ + G ++ A + +MP
Sbjct: 364 RYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMP 407
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F + ++ WN M+ G A KA L+++M+R PN TF L
Sbjct: 291 GCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTL 350
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA-------TCNCMDPARKLFD- 147
AC C FVG + +S + L L Y +D A +L
Sbjct: 351 TACC--HCGFVG---EGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKA 405
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
M + DV +L++ +G + + R++ D++ E
Sbjct: 406 MPMLPDVRIMGALLSTCKANGNVELPREILDRLVE 440
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 229/430 (53%), Gaps = 25/430 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ + F W MI F + +A AL+ M + + ++
Sbjct: 214 GMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA G +CH R G S V N L+H+Y++ + AR+LFD D
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQF 333
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I GY K+G + A+++F MP+K+ VSW+ MI+G VQ D EAL FN MQ G
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG 393
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ +V ++AC + +L+QG+ +H Y+ + + +ILGT++IDMY KCGC+E+A
Sbjct: 394 IKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESAL 453
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-VPNES------------ 322
VFD+M R + ++I GLA + ++++F M+ PNE
Sbjct: 454 EVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHA 513
Query: 323 ------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M Y I P ++HYGC+VDLLGRAG ++ A+ ++ MP+ PD GA
Sbjct: 514 GLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGA 573
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL +C HGD ++G+ LV H+G H +LSNIYAS W V+ +R M+ V
Sbjct: 574 LLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHV 633
Query: 431 RKVPGCSLIE 440
K+PG S++E
Sbjct: 634 PKIPGSSVVE 643
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 167/384 (43%), Gaps = 67/384 (17%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLS--HGYRLFVCLQYRTTFIWNTM 59
+ + QI + SG L D FA ++I F +++ + L H RL + F N +
Sbjct: 18 RHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMV 77
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++ E P LY M + P+ YT + + ACA + G H +R G+
Sbjct: 78 LKAAREHGLPHLCLPLYASMSAA---PDCYTHTILAAACATRRAIEEGRQVHCHAVRHGF 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS------------ 167
++ N L+ +Y+ C C+ ARK+FD D +SW +++ Y ++
Sbjct: 135 GRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFAR 194
Query: 168 -------------------GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
G + AR++FD + K+ +W+AMI+ + + F EAL F
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA-- 266
+ M+ G+ + A +V + ACA L G H R G+ + + A+I MY+
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 267 -----------------------------KCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
K G ++ A +F MP++D ++T++ISG
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 298 NHDQSASAIELFMRMQLEGVVPNE 321
+DQS+ A+ +F MQ +G+ P+E
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDE 398
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
ACA A+++GR +H + R+G ++ L A++ MY+ CGC+ A VFD+ P D
Sbjct: 111 AACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAV 170
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
++ ++++ + A+ +F RM G SM V L GR G
Sbjct: 171 SWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSM----------------VSLFGRRG 214
Query: 348 MLEAAKKV 355
M++ A+KV
Sbjct: 215 MVDEARKV 222
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 176/555 (31%), Positives = 278/555 (50%), Gaps = 92/555 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQ+ + + D K+I S +L+ R+F +Q + N++I
Sbjct: 32 LNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLA--LRVFNQVQEPNVHLCNSLI 89
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A ++P +AF ++ +M R +N+T+ F+L+AC+ S L V + H + +LG
Sbjct: 90 RAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLS 149
Query: 121 SYDFVLNGLLHLYATC-----------------------NCM----------DPARKLFD 147
S +V N L+ Y+ C N M ARKLFD
Sbjct: 150 SDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFD 209
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM---------------- 191
RD+ISW ++++GYA+ ++S A ++F+KMPE+N VSWS M
Sbjct: 210 EMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVM 269
Query: 192 -----------------INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
I GY + L KEA + + M G R + A + L ACA G
Sbjct: 270 FDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESG 329
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L G H+ + ++ + + + A++DMYAKCG ++ A VF+ MP +D+ ++ +++
Sbjct: 330 LLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLH 389
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIE 330
GL H AIELF RM+ EG+ P++ SM ++Y +
Sbjct: 390 GLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLV 449
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P V+HYGCLVDLLGR G L+ A KVV+ MP+EP+ + GALL ACR+H +VD+ KE +++
Sbjct: 450 PKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDN 509
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
LV+ G + LLSNIYA+ E W GV +R M+ V K G S +E++ + EF
Sbjct: 510 LVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTV 569
Query: 451 GERTNVLMEEIVLLL 465
++++ ++I +L
Sbjct: 570 FDKSHPKSDQIYQML 584
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 229/430 (53%), Gaps = 25/430 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ + F W MI F + +A AL+ M + + ++
Sbjct: 214 GMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA G +CH R G S V N L+H+Y++ + AR+LFD D
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQF 333
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I GY K+G + A+++F MP+K+ VSW+ MI+G VQ D EAL FN MQ G
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG 393
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ +V ++AC + +L+QG+ +H Y+ + + +ILGT++IDMY KCGC+E+A
Sbjct: 394 IKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESAL 453
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-VPNES------------ 322
VFD+M R + ++I GLA + ++++F M+ PNE
Sbjct: 454 EVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHA 513
Query: 323 ------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M Y I P ++HYGC+VDLLGRAG ++ A+ ++ MP+ PD GA
Sbjct: 514 GLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGA 573
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL +C HGD ++G+ LV H+G H +LSNIYAS W V+ +R M+ V
Sbjct: 574 LLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQWHV 633
Query: 431 RKVPGCSLIE 440
K+PG S++E
Sbjct: 634 PKIPGSSVVE 643
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 167/384 (43%), Gaps = 67/384 (17%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLS--HGYRLFVCLQYRTTFIWNTM 59
+ + QI + SG L D FA ++I F +++ + L H RL + F N +
Sbjct: 18 RHLLQIHAQFVASGLLADAFAASRLILFTTSTRLLPLPFHHSLRLLHVVHRPNAFSCNMV 77
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++ E P LY M + P+ YT + + ACA + G H +R G+
Sbjct: 78 LKAAREHGLPHLCLPLYASMSAA---PDCYTHTILAAACATRRAIEEGRQVHCHAVRHGF 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS------------ 167
++ N L+ +Y+ C C+ ARK+FD D +SW +++ Y ++
Sbjct: 135 GRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFAR 194
Query: 168 -------------------GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
G + AR++FD + K+ +W+AMI+ + + F EAL F
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA-- 266
+ M+ G+ + A +V + ACA L G H R G+ + + A+I MY+
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 267 -----------------------------KCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
K G ++ A +F MP++D ++T++ISG
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 298 NHDQSASAIELFMRMQLEGVVPNE 321
+DQS+ A+ +F MQ +G+ P+E
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDE 398
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
ACA A+++GR +H + R+G ++ L A++ MY+ CGC+ A VFD+ P D
Sbjct: 111 AACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAV 170
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
++ ++++ + A+ +F RM G SM V L GR G
Sbjct: 171 SWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSM----------------VSLFGRRG 214
Query: 348 MLEAAKKV 355
M++ A+KV
Sbjct: 215 MVDEARKV 222
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 256/487 (52%), Gaps = 63/487 (12%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSA-SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+Q+ + G + + + ++ F S GD S R+F + R W +I G+
Sbjct: 54 RQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDAS---RVFDEMLVRDVVSWTGVISGY 110
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+A L+ LR D PN TF +L AC L VG H + +
Sbjct: 111 VRAGLFDEAVGLF---LRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGL 167
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
V N L+ +Y C C+ P A+Q+FD++ EK
Sbjct: 168 EVSNALMDMYVKCGCL-PG------------------------------AKQVFDELAEK 196
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ VSW+++I+G VQ + KEALE F MQ G P+ + L+ACA LGALD GRW+H
Sbjct: 197 DIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVH 256
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
++DR I+ DI +GTA++DMYAKCGCIE + +F+ MP+++V + +L++GLA H +
Sbjct: 257 EHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAY 316
Query: 304 SAIELFMRMQLEGVVPNESM-------------------------SEIYGIEPGVQHYGC 338
+ELF M G+ PNE + Y + P ++HYGC
Sbjct: 317 KVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGC 376
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLL RA +L+ A ++ + MP+ PD ++GALL+AC+ +G+ +L +E ++ VE
Sbjct: 377 MVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDRFVELDSHD 436
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
GV+VLLSNI+A ++W+ V ++RR M++ ++K PG ++IE+DG EF+ G+ +
Sbjct: 437 SGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGKAHEFIVGDTRHPQD 496
Query: 459 EEIVLLL 465
+ I LLL
Sbjct: 497 KRIRLLL 503
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 262/478 (54%), Gaps = 57/478 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + ++F + + WN MI G+AE +A L+K M++++ P+ T ++
Sbjct: 171 GYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 230
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA + + +G H+ + G+ S ++N L+ LY+ C
Sbjct: 231 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC------------------- 271
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G++ A +F+ +P K+ +SW+ +I GY ++L+KEAL F M G
Sbjct: 272 ------------GELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 319
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIIDMYAKCGCIET 273
PN ++ L ACA LGA+D GRWIH Y+D+ G+ L T++IDMYAKCG IE
Sbjct: 320 ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEA 379
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A VF+S+ ++ + ++ ++I G A H ++ ++ ++F RM+ G+ P++
Sbjct: 380 AHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSH 439
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
SM++ Y + P ++HYGC++DLLG +G+ + A++++ M +EPD +
Sbjct: 440 SGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWC 499
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+LL AC++HG+V+LG+ ++L++ ++ G +VLLSNIYA+ +WN V R + D
Sbjct: 500 SLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKG 559
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F D +EV E
Sbjct: 560 MKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQE 617
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/455 (31%), Positives = 232/455 (50%), Gaps = 64/455 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTM 59
++ ++ I + + +G +A+ K+I FC S D L + +F +Q IWNTM
Sbjct: 3 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG A ++P+ A LY M+ LPN+YTF F+L++CA + G H V++LG
Sbjct: 63 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V L+ +Y ++ A K+FD S +RDV+S+T+LI GYA G I A++MFD+
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ VSW+AMI+GY + +KEALE F M RP+ + +V ++ACA G+++ G
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H+++D +G ++ + A+ID+Y+KCG +ETAC +F+ +P +DV ++ +LI G +
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC--------------------- 338
+ A+ LF M G PN+ + I P H G
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVT--MLSILPACAHLGAIDIGRWIHVYIDKRLKGVANA 360
Query: 339 ------LVDLLGRAGMLEAAKKV----------------------------------VRE 358
L+D+ + G +EAA +V +R+
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
IEPD+ LL+AC G +DLG+ S+ +
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 455
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 243/458 (53%), Gaps = 25/458 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G + +LF + + WNTM+ A+ +A Y + + N ++F+
Sbjct: 137 AKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFA 196
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L C + + H Q++ G+ S + + +L Y C M ARKLFD R
Sbjct: 197 GVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR 256
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV++WT++++GYAK G + A ++F +MPEKN VSW+A+I+GY + + +ALE F M
Sbjct: 257 DVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMM 316
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
L RP+ L ACA + +L G+ IHAY+ R + + I+ +A+IDMY+KCG +
Sbjct: 317 LFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLG 376
Query: 273 TACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
VFD M N+ DV + ++IS LA H AI++ M G P+
Sbjct: 377 IGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNAC 436
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
ESMS YGI P +HY CL+DLLGRAG E + +MP +PD+ V
Sbjct: 437 SHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRV 496
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
ALL CR+HG ++LG++ E L+E +VLLS+IYA +W V+KVR+ M +
Sbjct: 497 WNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNE 556
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
+V+K S +E++ V F + ++ L E+I +L
Sbjct: 557 RQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVL 594
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 163/331 (49%), Gaps = 20/331 (6%)
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I +KN+ +A + + + R ++ T + +L+ CAD+ L G H + G
Sbjct: 31 IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90
Query: 120 ESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ F+ N L+++YA C ARK+FD R++ SW ++++GYAK G I AR++FD
Sbjct: 91 KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
KMPEK+ VSW+ M+ + Q + EAL ++ + G + N G LT C L +
Sbjct: 151 KMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGL 210
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
R +H + G +++L ++++D Y KCG + A +FD M RDV A+T+++SG A
Sbjct: 211 TRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAK 270
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
SA ELF+ M + V + L+ R GM A ++ +
Sbjct: 271 WGDMKSANELFVEMPEKNPVS----------------WTALISGYARNGMGHKALELFTK 314
Query: 359 M---PIEPDNYVLGALLNACRVHGDVDLGKE 386
M + PD + + L AC + GK+
Sbjct: 315 MMLFHVRPDQFTFSSCLCACASIASLKHGKQ 345
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 251/457 (54%), Gaps = 50/457 (10%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN +I + ++N+P A +Y Q+ + DF +N+ +L+AC S +G H V+
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW----TSLINGYAKSGQIS 171
+ G + FV N L+ +Y C C++ AR +FD + RDV+SW T+L++ YAK G +
Sbjct: 187 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLG 246
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+ARQ+F+ + +K VSW+AMI G ++ + +E + F MQ PN ++
Sbjct: 247 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITML------- 299
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
++ +E+D IL TA++DMYAKCG I A +F +RD+ + +
Sbjct: 300 ---------------NKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 344
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I+G A H A+++F M+ +GV PN E M +
Sbjct: 345 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 404
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
G+ P ++HYGC+VDLLGRAG+L+ A ++++ MPI+P+ V GAL+ ACR+H + LG+
Sbjct: 405 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 464
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
L+E ++ G +VL+SNIYA+ +W+ VR+ M+ ++K PG S+IEV+G V E
Sbjct: 465 ATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHE 524
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
F+ G++++ + I +L + + L + D + V
Sbjct: 525 FLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTV 561
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 42/253 (16%)
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+ W+ +I Y + + + AL + ++ F ++ L AC + G+ IH
Sbjct: 124 SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHG 183
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD------------------- 285
+V + G++ D+ +G A++ MY +C C+E A VFD M RD
Sbjct: 184 FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCG 243
Query: 286 ----------------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYG 328
V ++T++I+G ++ +LF+RMQ E + PNE +M
Sbjct: 244 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKER 303
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
+E LVD+ + G + AA ++ E I D + A++ +HG G+E +
Sbjct: 304 VEVDCILNTALVDMYAKCGDINAAGRLFIEA-ISRDICMWNAIITGFAMHG---YGEEAL 359
Query: 389 ESLVERSLDHEGV 401
+ E ++ +GV
Sbjct: 360 DIFAE--MERQGV 370
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 115/299 (38%), Gaps = 60/299 (20%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +LF L +T W MI G N + L+ +M + PN T
Sbjct: 243 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKE 302
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLN-GLLHLYATCNCMDPARKLFDMSVNRDV 154
R D +LN L+ +YA C ++ A +LF +++RD+
Sbjct: 303 RV-----------------------EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 339
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
W ++I G+A ++GY + EAL+ F M+
Sbjct: 340 CMWNAIITGFA--------------------------MHGYGE-----EALDIFAEMERQ 368
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G +PN +G L AC+ G + +G+ + V G+ I ++D+ + G ++
Sbjct: 369 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDE 428
Query: 274 ACSVFDSMPNR-DVFAYTSLISGLANHDQSA---SAIELFMRMQLEGVVPNESMSEIYG 328
A + SMP + + + +L++ H A + ++ E N MS IY
Sbjct: 429 AHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYA 487
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 9/206 (4%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD++ RLF+ R +WN +I GFA +A ++ +M R PN+ TF +L
Sbjct: 322 GDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 381
Query: 96 RACADTSCLFVGLICHAQVIR-LGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSVNRD 153
AC+ + G +++ G ++ L +D A ++ M + +
Sbjct: 382 HACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPN 441
Query: 154 VISWTSLING--YAKSGQIS--IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
I W +L+ K+ Q+ A Q+ + PE N M N Y + + +A
Sbjct: 442 TIVWGALVAACRLHKNPQLGELAATQLLEIEPE-NCGYNVLMSNIYAAANRWSDAAGVRK 500
Query: 210 YMQLCGFR--PNHAGIVGALTACAFL 233
M+ G + P H+ I T FL
Sbjct: 501 TMKTVGMKKEPGHSVIEVNGTVHEFL 526
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 155/477 (32%), Positives = 251/477 (52%), Gaps = 57/477 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
++++ QIQ++ + + D V K+I FC+ S +S+ LF + I+N+M
Sbjct: 42 LRELMQIQAY-AIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSM 100
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG++ P++ F+L+ ++L LP+NYTF +L+ACA L G H ++LG
Sbjct: 101 ARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGL 160
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V L+++Y C +D A R +FD+
Sbjct: 161 DDNVYVCPTLINMYTECEDVDSA-------------------------------RXVFDR 189
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ E V ++AMI GY + + EAL F MQ +PN ++ L++CA LG+LD G
Sbjct: 190 IVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+WIH Y ++ + + TA+IDM+AKCG ++ A S+F+ M +D A++++I ANH
Sbjct: 250 KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
++ ++ +F RM+ E V P+E M +GI P ++H
Sbjct: 310 GKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKH 369
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YG +VDLL AG LE A + + ++PI P + LL AC H ++DL ++ E + E
Sbjct: 370 YGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELD 429
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
H G +V+LSN+YA ++W V+ +R+ M+D + KVPGCS IEV+ VV EF SG+
Sbjct: 430 DSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGD 486
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 162/507 (31%), Positives = 266/507 (52%), Gaps = 33/507 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+Q + + + G + F K++ ++S GDL +F + ++ ++N++IR +
Sbjct: 97 QQAHAQIVLHGLQPNAFLAAKMVAMYASS--GDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154
Query: 65 EKNEPIKAFALYKQMLRSDFLP---NNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ R FL +N+T F+L++CAD S + +G H Q +R+G E
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEG 214
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+V L+ +Y C + ARKLFD + RD+ SW +LI GY K G+I +A +F++M
Sbjct: 215 DFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME 274
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG--FRPNHAGIVGALTACAFLGALDQG 239
+N VSW+AMI+GY Q ++AL F+ M G +PN IV L ACA AL++G
Sbjct: 275 HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG 334
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLA 297
R IH + + G+ L+ + TA+ MYAKC + A FD + +++ A+ ++I+ A
Sbjct: 335 RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYA 394
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
+H A+ +F M GV P+ M I+ +EP V
Sbjct: 395 SHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRV 454
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HY C+VDLLGRAG L AK+++ +MP++ V GALL ACR H ++++ + L
Sbjct: 455 EHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFV 514
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
D+ G +VLLSN+YA W V+K+R ++ ++K PGCS IE++G F+ ++
Sbjct: 515 LEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADK 574
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDD 480
++ +EI L + + +K + D
Sbjct: 575 SHPQAKEIYKFLEALPEKIKMAGYIPD 601
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
L + L+HF + ++A I LT F+ G+ HA + +G++ + L
Sbjct: 66 LLQPILQHFPHPS------SYAPIFQFLTRHNFI---KLGQQAHAQIVLHGLQPNAFLAA 116
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD---QSASAIELFMRMQLEG 316
++ MYA G +++A VFD + N Y S+I H +E + RM G
Sbjct: 117 KMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLG 176
Query: 317 VVPNE-----------SMSEI------------YGIEPGVQHYGCLVDLLGRAGMLEAAK 353
++ + +S + G+E L+D+ + G++ A+
Sbjct: 177 LLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDAR 236
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
K+ +M + D AL+ G++ + ++ E + R++
Sbjct: 237 KLFDKMIVR-DMASWNALIAGYMKEGEIGVAEDLFERMEHRNI 278
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 164/500 (32%), Positives = 269/500 (53%), Gaps = 33/500 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M QIKQ+ +H +G + +++ I +L + +LF + F++N +I
Sbjct: 1 MNQIKQLHAHCLRTGVDETKDLLQRLLL------IPNLVYARKLFDLHRNPCIFLYNKLI 54
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ ++ ++P ++ LY + PN++TF+FI A A S + H+Q R G+E
Sbjct: 55 QSYSVHHQPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPLRLLHSQFFRSGFE 114
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F L+ YA + AR++FD NRDV W ++I GY + G + A ++FD M
Sbjct: 115 SDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGDMKAAMELFDSM 174
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQG 239
P KN SW+ +I+G+ Q + EAL F M+ +PNH +V L ACA LG L+ G
Sbjct: 175 PNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIG 234
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLAN 298
R + Y NG +I + A ++MY+KCG I+ A +FD + N R++ ++ S+I LA
Sbjct: 235 RRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLAT 294
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + A+EL+ +M EG P+ +SM E++ I P ++
Sbjct: 295 HGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISPKLE 354
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC++DLLGR G L+ A +++ MP++PD V G LL AC HG+V++ + E+L++
Sbjct: 355 HYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALMKL 414
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV-VCEFVSGER 453
+ G V++SNIYA+ E+W+GV ++R+ M+ + K G S GV V +F ++
Sbjct: 415 EPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEAGVEVHKFTVEDK 474
Query: 454 TNVLMEEIVLLLFGIDKHLK 473
++ EI +L I + +K
Sbjct: 475 SHPRSYEIYQVLDEISRRMK 494
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 250/458 (54%), Gaps = 31/458 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC--LFVGLI 109
TT W + I + +A + M + PN+ TF +L C D S +G +
Sbjct: 29 TTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSGSEALGDL 88
Query: 110 CHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +LG + ++ V +L +Y+ AR +FD +++ ++W ++I+GY +SG
Sbjct: 89 LHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSG 148
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q++ A ++FD+MPE++ +SW+AMING+V+ +EAL F MQ+ G +P++ I+ AL
Sbjct: 149 QVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALA 208
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LGAL G W+H YV + +I + ++ID+Y +CGC+E A VFD M R V +
Sbjct: 209 ACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVS 268
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+ S+I G A + + ++ F +MQ EG P+ ++M
Sbjct: 269 WNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMK 328
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDL 383
+ I P ++HYGCLVDL RAG LE A VV+ MP++P+ V+G+LL ACR HG + L
Sbjct: 329 RDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRNHGNNTVL 388
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ V+ L + ++ +V+LSN+YA+ W G K+RR M+ ++K PG S +E+D
Sbjct: 389 AERLVKHLSDLNVKSHSNYVILSNMYAADGIWEGASKMRRKMKGLGLKKQPGFSSVEIDD 448
Query: 444 VVCEFVSGERTNVLMEEI--VLLLFGIDKHLKSLCFFD 479
F++G+ +V I VL L D L+ C F+
Sbjct: 449 CTHVFMAGDSAHVETAYIREVLELISSDLRLQG-CVFE 485
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 144/360 (40%), Gaps = 76/360 (21%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNT-------------------------------MIR 61
S G +F ++ + + WNT MI
Sbjct: 114 SKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMIN 173
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
GF +K +A A +++M S P+ L AC L GL H V+ +++
Sbjct: 174 GFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKN 233
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
V N L+ LY C C++ AR++FD R V+SW S+I G+A +G
Sbjct: 234 NIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNA----------- 282
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-R 240
E+L +F MQ GF+P+ GALTAC+ +G +++G R
Sbjct: 283 --------------------HESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLR 322
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANH 299
+ + I I ++D+Y++ G +E A +V SMP + + SL++ NH
Sbjct: 323 YFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRNH 382
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ E ++ + V + S +Y L ++ G+ E A K+ R+M
Sbjct: 383 GNNTVLAERLVKHLSDLNVKSHS------------NYVILSNMYAADGIWEGASKMRRKM 430
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 23/225 (10%)
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
KS QI ++ ++ + VSW++ I + EA + F+ M+L G PNH +
Sbjct: 12 KSSQIQRILKL-NQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIA 70
Query: 226 ALTACAFL--GALDQGRWIHAYVDRNGIE-LDIILGTAIIDMYAKCGCIETACSVFDSMP 282
L+ C + G+ G +H Y + G++ +++GTAI+ MY+K G A VFD M
Sbjct: 71 LLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFME 130
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342
+++ + ++I G Q +A++LF M ++ + +++
Sbjct: 131 DKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLIS----------------WTAMING 174
Query: 343 LGRAGMLEAAKKVVREMPI---EPDNYVLGALLNACRVHGDVDLG 384
+ G E A REM I +PD + A L AC G + G
Sbjct: 175 FVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFG 219
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 241/443 (54%), Gaps = 27/443 (6%)
Query: 29 FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88
+ SA +GD R F + R WN+MI G+A+ +A +L++ M R L +
Sbjct: 155 YASAGSLGD---SRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADE 211
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+T +L AC+ L G + H+ ++ G + N L+ +Y C + A FDM
Sbjct: 212 FTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDM 271
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++ +SWTS++ AK I AR F+++PEK+ +SW+AMI+ YVQ F EAL+ +
Sbjct: 272 MPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLY 331
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
N M+L G P+ + L+AC LG L G+ IH + N + L +++DMYA+C
Sbjct: 332 NRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARC 391
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G ++TA S+F MP+++V ++ ++I LA H ++ A+ F M + P+E
Sbjct: 392 GQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALL 451
Query: 322 -----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+M +Y ++PGV+HY C+VDLLGR G L A ++++MP+ PD
Sbjct: 452 SACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPD 511
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
V GALL ACR+HG + +GK+ ++ L+E G+ VL+SN+ T QW ++++R+
Sbjct: 512 VVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKL 571
Query: 425 MEDNEVRKVPGCSLIEVDGVVCE 447
M + ++K G S IE + + E
Sbjct: 572 MREWGMKKNMGVSSIETNSNIHE 594
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 200/416 (48%), Gaps = 49/416 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ ++ Q+ +HL V G D + +C+ G + + +LF + F++N++I
Sbjct: 25 VHRLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLI 82
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + + P +A L + M+R LPN +T F+L+ACA ++ H V++LG+
Sbjct: 83 RAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFV 142
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N LLH YA +G + +R+ FD+M
Sbjct: 143 GQVFVGNALLH-------------------------------SYASAGSLGDSRRFFDEM 171
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
++N VSW++MINGY Q +EA F M+ G + +V L AC+ G L+ G+
Sbjct: 172 VDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK 231
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H+++ G +D+IL A++DMY KCG + A + FD MP ++ ++TS++ LA
Sbjct: 232 LVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRA 291
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+A + F ++ + ++ +M Y ++ G H +DL R +L A
Sbjct: 292 SIDAARDWFEQIPEKSIISWNAMISCY-VQGGRFHEA--LDLYNRMKLLGLA-------- 340
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYASTEQ 414
PD + L A+L+AC GD+ GK + + + + GV + L ++YA Q
Sbjct: 341 --PDEFTLAAVLSACGQLGDLASGK-MIHDCIRDNFHNPGVALFNSLLDMYARCGQ 393
>gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Vitis vinifera]
Length = 531
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 169/506 (33%), Positives = 263/506 (51%), Gaps = 65/506 (12%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCS-ASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
KQIKQ+ S L +G L CS AS+ L++ T ++N++I
Sbjct: 28 KQIKQVHSLLITNGHLLP----------CSNASN-------------LKWMATLLYNSLI 64
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR---ACADTSCLFVGLICHAQVIRL 117
RG+ EP K ++ ML PNN TF I++ +C+ + +G H VI+
Sbjct: 65 RGYLNFVEPHKTLLIFTHMLAHQAPPNNLTFPSIIKKAASCSPSLAFMIGTPLHTHVIKR 124
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G F+ L+ LYA + A ++F+ V+S ++++ K+G + A +F
Sbjct: 125 GLSHDLFIQTSLVVLYARLCKVSDACRVFEEISRPCVVSSNAMLDALGKNGDMGSALFLF 184
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM------QLCGFRPNHAGIVGALTACA 231
+ MPE++ VSW+++ING+ + F+EA++ F M + C +PN A V L++C
Sbjct: 185 ESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEATFVSVLSSCT 244
Query: 232 FL---GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
L GAL QG+ IH Y+ RN +E + +GTA+I +Y K GC+E A +F+ M + V
Sbjct: 245 NLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENAMKIFNGMVVKGVCT 304
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMS 324
+ ++IS LA + + A++LF +M+++G+ P+E SM
Sbjct: 305 WNAMISSLACNGREKQALDLFEKMKMQGLCPDEVTFVAVITACARSKFVVLGLGFFQSMW 364
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+G+ P + HYGC+VDLLGRAG+LE A + ++ MP EPD VLGALL AC+VHG ++LG
Sbjct: 365 CDFGVVPRMVHYGCVVDLLGRAGLLEEATEFIKRMPFEPDATVLGALLGACKVHGAIELG 424
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
E L+E H G +V LSNIYA E W R+ M + + K+P S+
Sbjct: 425 NEVGRRLLELQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGISKIPAYSMNPAISA 484
Query: 445 VCEF-----VSGERTNVLMEEIVLLL 465
EF +SG L+ E+ L+
Sbjct: 485 TLEFSYKWALSGTSPQNLVAELYSLV 510
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 257/468 (54%), Gaps = 32/468 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP--NNYTFSFILRACADTS----CL 104
R W + I A + + A A ML S P N+ T +L ACAD+
Sbjct: 30 RDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLAR 89
Query: 105 FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY 164
+ L HA+ ++L + S+ + L Y A +LFD R V+++ ++++G
Sbjct: 90 PLALTLHARALKL-FPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGL 148
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
++G + A ++FD MP + VSW+A+I+G+V+ EA++ F M L P++ ++
Sbjct: 149 MRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLI 208
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
++ACA +GAL G W+H V R G+E ++ + ++IDMYA+CG ++ A VF S+ R
Sbjct: 209 AVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKR 268
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ 320
V ++ S+I GLA + AIELF M+ +G P+
Sbjct: 269 TVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYY 328
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
+ M+ YGI ++HYGC+VDLLGRAG L+ A VV MP+ P+ VLGALL CR+HGD
Sbjct: 329 DLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGD 388
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+D+ ++ ++ L E + +VLLSNIYA+ +W+G KVR M+ V+K PG S++E
Sbjct: 389 LDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIVE 448
Query: 441 VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEG 488
+DG V EFVS +R++ EEI +L G+ +H ++ DD + +G
Sbjct: 449 IDGDVHEFVSSDRSHPQAEEIGQML-GLLRHEMAMYGCDDHGSSSLDG 495
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ RT WN+MI G A +A L+++M R F P+ T + +L
Sbjct: 253 GQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVL 312
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ HA + G YD + Y M+
Sbjct: 313 TACS-----------HAGLTEHGLRYYDLMTTE----YGIAARME--------------- 342
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMING---YVQVDLFKEALEHF 208
+ +++ ++G++ A + + MP + N V A++ G + +D+ ++ ++H
Sbjct: 343 HYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDLDMAEQLMQHL 399
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 246/456 (53%), Gaps = 57/456 (12%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFA-LYKQMLRS-DFLPNNYTFSFILRACADT 101
LF + T F +N++IR +Y+ MLR+ PN +T +F L+ACA
Sbjct: 80 LFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACAAV 139
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
G HAQ +R G E+ +V GLL+LY
Sbjct: 140 PAPGEGRQLHAQALRQGLEASAYVQTGLLNLY---------------------------- 171
Query: 162 NGYAKSGQISIARQMFDKM-PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
AK Q+++AR +FD M P+K+ V+WSAMINGY +V + EAL F MQ G P+
Sbjct: 172 ---AKCEQVALARTVFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDE 228
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+VG ++ACA GALD G+W+HAY+DR GI +D+ L TA+IDMYAKCG IE A VFD+
Sbjct: 229 VTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDA 288
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M +D A++++I G A H A+ LF RM V PN
Sbjct: 289 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDG 348
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
S+ + GI+P +++YGC++DLL R+G+L+ A V +MPI P++ + LL AC+
Sbjct: 349 RRYWSIMQNLGIKPSMENYGCMIDLLCRSGLLDDAYSFVIDMPISPNSIIWRTLLVACKS 408
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+D+ + + L+E + +VLLSN+ AS QW+ V +R+ M+D+ V V GCS
Sbjct: 409 SNRIDIAESASKRLLELEPHNPENYVLLSNLCASNSQWDRVSYLRKKMKDSNVTAVAGCS 468
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
IE++G + EFV + ++ ++EI L+L I ++
Sbjct: 469 SIEINGYLHEFVVSDDSHPEIKEIRLVLREIADRVR 504
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/446 (35%), Positives = 247/446 (55%), Gaps = 32/446 (7%)
Query: 69 PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW-ESYDFVLN 127
P A L+ +LRS P+ + +CA HA + G S+ V
Sbjct: 56 PHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRC 115
Query: 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG-QISIARQMFDKMPEKNAV 186
L+H YA C + AR++FD + D+++W L+ GYA+ G + R F +MP +++V
Sbjct: 116 RLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSV 175
Query: 187 SWSAMINGYVQVDLFKEALEHFNYM---QLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
SW+ +++ V + EA+ F M Q C +P+ +V ++A A+LGAL G W H
Sbjct: 176 SWNTVLSWCVVNGEYDEAIAVFREMLASQEC--QPDRVTLVSVVSAIAYLGALAHGLWAH 233
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQS 302
AYV R IE++ L +A+I+MY+KCG IE A VFD++ R + + ++++G + S
Sbjct: 234 AYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYS 293
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A+ELF RM+ ++PN + MS YGIEP + HYGC
Sbjct: 294 ERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGC 353
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDL RAGM E A+++++ MP+EPD +L ALL ACR H +++LGK+ L+E + +
Sbjct: 354 MVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAAND 413
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
+VLLSNIYA W GV KVR+ M D V K PG S +E++GV+ EF+SG++++
Sbjct: 414 HAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRK 473
Query: 459 EEIVLLLFGIDKHLKSLCFFDDGNEV 484
+I +L I + LKS + D ++V
Sbjct: 474 RDIYKMLGEICQQLKSSGYTPDTSQV 499
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 34/242 (14%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTS 102
F + R + WNT++ E +A A++++ML S + P+ T ++ A A
Sbjct: 165 FFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLG 224
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L GL HA V R C++ KL ++LIN
Sbjct: 225 ALAHGLWAHAYVFR--------------------KCIEVEEKLS-----------SALIN 253
Query: 163 GYAKSGQISIARQMFDKMPEKNAV-SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
Y+K G I A +FD + K ++ +W+AM+ G+ + ALE F M+ PN
Sbjct: 254 MYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALELFTRMESTRLMPNKI 313
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
L AC+ G +++G + R GIE DI ++D++ + G E A + +
Sbjct: 314 TFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQT 373
Query: 281 MP 282
MP
Sbjct: 374 MP 375
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/488 (32%), Positives = 264/488 (54%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G ++ ++F + + WN MI G+AE +A L+K+M++++
Sbjct: 161 ITGYASK---GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 217
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T ++ ACA ++ + +G H+ + G+ S ++N L+ LY C
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC--------- 268
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F+ + K+ +SW+ +I GY ++L+KEAL
Sbjct: 269 ----------------------GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEAL 306
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIID 263
F M G PN ++ L ACA LGA++ GRWIH Y+++ G+ T++ID
Sbjct: 307 LLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLID 366
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VFDS+ NR + ++ ++I G A H ++ +A ++F RM+ + P++
Sbjct: 367 MYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDIT 426
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM E Y I P ++HYGC++DLLG +G+ + A++++ M
Sbjct: 427 FVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM 486
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + +LL AC++HG+V+LG+ ++L++ + G +VLLSNIYA+ +WN V
Sbjct: 487 EMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVA 546
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
K+R + D ++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F
Sbjct: 547 KIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 606
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 607 DTSEVLQE 614
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 228/451 (50%), Gaps = 60/451 (13%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMIR 61
++ I + + +G +A+ K+I FC S D L + +F +Q IWNTM R
Sbjct: 2 SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G A ++P+ A LY M+ LPN YTF F+L++CA + G H V++LG++
Sbjct: 62 GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+V L+ +Y ++ ARK+FD S +RDV+S+T+LI GYA G I+ A++MFD++P
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
K+ VSW+AMI+GY + KEALE F M RP+ + +V ++ACA +++ GR
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H+++D +G ++ + A+ID+Y KCG +ETAC +F+ + +DV ++ +LI G + +
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301
Query: 302 SASAIELFMRMQLEGVVPNESM-------------------------SEIYGIEPGVQHY 336
A+ LF M G PN+ + G+ H
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHR 361
Query: 337 GCLVDLLGRAGMLEAAKKV----------------------------------VREMPIE 362
L+D+ + G +EAA++V +R+ IE
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVE 393
PD+ LL+AC G +DLG+ S+ E
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMKE 452
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 249/452 (55%), Gaps = 30/452 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC--LFVGLI 109
T W + I +A + M + PN+ TF +L C D S +G +
Sbjct: 24 TIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDL 83
Query: 110 CHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +LG + ++ V +L +Y+ + + AR +FD +++ ++W ++I+GY ++G
Sbjct: 84 LHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNG 143
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ A +MFDKMPE++ +SW+AMING+V+ +EAL F MQ+ G +P++ I+ AL
Sbjct: 144 QVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALN 203
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LGAL G W+H YV + ++ + ++ID+Y +CGC+E A VFD M R V +
Sbjct: 204 ACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVS 263
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+ S+I G A + + ++ F +MQ EG P+ ++M
Sbjct: 264 WNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMK 323
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDL 383
+ I P ++HYGCLVDL RAG LE A KVV+ MP++P+ V+G+LL ACR HG + L
Sbjct: 324 RDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVL 383
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ ++ L + ++ +V+LSN+YA+ +W G ++RR M+ ++K PG S IE+D
Sbjct: 384 AERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDD 443
Query: 444 VVCEFVSGERTNVLMEEI--VLLLFGIDKHLK 473
F++G+ +V +I VL L D L+
Sbjct: 444 CTHVFMAGDSAHVETADIREVLELVSSDLQLQ 475
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 141/326 (43%), Gaps = 45/326 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + ++F + R W MI GF +K +A A +++M S P+ L
Sbjct: 143 GQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 202
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H V+ +++ V N L+ LY C C++ AR++FD R V+
Sbjct: 203 NACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 262
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G E+L +F MQ G
Sbjct: 263 SWNSVIVGFAANGNA-------------------------------HESLVYFRKMQEEG 291
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F+P+ GALTAC+ +G +++G R+ + I I ++D+Y++ G +E A
Sbjct: 292 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEA 351
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
V SMP + + SL++ H + E M+ +S++ G
Sbjct: 352 LKVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMK----------HLSDVN--VKGH 399
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A ++ R+M
Sbjct: 400 SNYVILSNMYAADGKWEGASQMRRKM 425
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 22/216 (10%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL- 233
Q ++ + VSW++ I + EA + F+ M+L G PNH + L+ C
Sbjct: 15 QKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFS 74
Query: 234 -GALDQGRWIHAYVDRNGIE-LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
G+ G +H Y + G + +++GTAI+ MY+K ++ A VFD M +++ + +
Sbjct: 75 SGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNT 134
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
+I G + Q +A+++F +M ++ + +++ + G E
Sbjct: 135 MIDGYMRNGQVDNAVKMFDKMPERDLIS----------------WTAMINGFVKKGFHEE 178
Query: 352 AKKVVREMPI---EPDNYVLGALLNACRVHGDVDLG 384
A REM I +PD + A LNAC G + G
Sbjct: 179 ALAWFREMQISGVKPDYVAIIAALNACTNLGALSFG 214
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/460 (34%), Positives = 251/460 (54%), Gaps = 57/460 (12%)
Query: 53 TFIWNTMIRGFAEKNEPI---KAFALYKQMLRSDFLPNNYTFSFILRACAD-TSCLFVGL 108
F+ NT+IR P +A A + MLR+ PN +TF F+L++CA VGL
Sbjct: 97 AFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGL 156
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HA ++ G+ + +V N L+H+Y +C +G
Sbjct: 157 QAHAAALKFGFAADHYVSNTLIHMY---SCFG--------------------------AG 187
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ AR +F++MP ++AV+WSAMI GYV+ L +A+ F MQ+ G RP+ ++G L
Sbjct: 188 FLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLA 247
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
A A LGAL+ RW+ +V+R GI + L A+ID AKCG ++ A +VF+ M R V +
Sbjct: 248 AAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVS 307
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMS 324
+TS+I LA + A+ +F M+ GV+P++ SM
Sbjct: 308 WTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMK 367
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
YGIEP ++HYGC+VD+ GRAGM+E + VR MP++P+ + L+ ACR HG ++LG
Sbjct: 368 TEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELG 427
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ +L+ HE +V+LSN+YA T++W ++RR M ++KVPGCSL+E+DG
Sbjct: 428 ESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGE 487
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V EF++G+ ++ +EI ++ + + L+ + +EV
Sbjct: 488 VHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEV 527
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 241/467 (51%), Gaps = 62/467 (13%)
Query: 1 MKQIKQIQSHLTVSGTL-WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ Q+KQ+ + + VS + DPFA ++ C+ S GDLS +R+F +F+WNT+
Sbjct: 31 LDQLKQVHAQMIVSAVVATDPFAASRLFFSCALSPFGDLSLAFRIFHSTPRPNSFMWNTL 90
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IR A+ + P A +LY M RS+ LP +TF F+L+ACA H VI+ G
Sbjct: 91 IR--AQTHAP-HALSLYVAMRRSNVLPGKHTFPFLLKACARVRSFTASQQVHVHVIKFGL 147
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ V++ L+ Y+ SG ARQ+FD+
Sbjct: 148 DFDSHVVDALVRCYSV-------------------------------SGHCVSARQVFDE 176
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
PEK + W+ M+ GY Q EAL F M GF P A + L+ACA G L+ G
Sbjct: 177 TPEKISSLWTTMVCGYAQNFCSNEALRLFEDMVGEGFEPGGATLASVLSACARSGCLELG 236
Query: 240 RWIHAYVDRNGIELD--IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
IH ++ G+ L +ILGTA++ MYAK G I A +FD MP R+V + ++I GL
Sbjct: 237 ERIHEFMKVKGVGLGEGVILGTALVYMYAKNGEIAMARRLFDEMPERNVVTWNAMICGLG 296
Query: 298 NHDQSASAIELFMRMQLEGVV-PN------------------------ESMSEIYGIEPG 332
+ A+ LF +M+ EGVV PN SM +YGIEP
Sbjct: 297 AYGYVDDALGLFEKMKKEGVVVPNGVTFVGVLSACCHAGLIDVGREIFRSMKSVYGIEPK 356
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGCLVDLLGR G L A ++V+ MP + D +LG LL A R+ G+ ++ + V+ ++
Sbjct: 357 IEHYGCLVDLLGRGGWLLEAVELVKGMPWKADVVILGTLLAASRISGNTEVAERVVKDIL 416
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+ GVHV LSN+YA QW V ++R+ M++ ++K PG SL+
Sbjct: 417 ALEPQNHGVHVALSNMYAEAGQWQEVLRLRKTMKEERLKKAPGWSLV 463
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 232/449 (51%), Gaps = 55/449 (12%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
+F+WN MIRGFA + + LY +M+ P+ + F F L++CA S L G + H
Sbjct: 783 SFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQ 842
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++ C C + D+ +L++ YAK G I
Sbjct: 843 HLV-------------------CCGC------------SNDLFVDAALVDMYAKCGDIEA 871
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR +FDKM ++ VSW++MI+GY E L F+ M+ G PN I+ L AC
Sbjct: 872 ARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGN 931
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGAL +G W H+YV + G E DI++ TAI+DMY+KCG ++ A +FD +D+ ++++
Sbjct: 932 LGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAM 991
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYG 328
I+ H AI+LF +M GV P+ + M+E +
Sbjct: 992 IASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFV 1051
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I + +Y C+VDLLGRAG L A ++ MP+EPD + G+LL ACR+H ++DL ++
Sbjct: 1052 IARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIA 1111
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ L H G HVLLSNIYA+ +WN VEKVR+ M K+ G SL+E D V +F
Sbjct: 1112 DHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKF 1171
Query: 449 VSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
G+R++ E++ L + +K L +
Sbjct: 1172 GVGDRSHPQWEKLYAKLEELAAPMKHLGY 1200
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/474 (28%), Positives = 229/474 (48%), Gaps = 56/474 (11%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + + W+TMI +A +A L+ +M+ F PN+ T L+ACA +
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L G H + G+E V L+ +Y C+C D A LF
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQ---------------- 366
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
++P+K+ VSW A+++GY Q + +++ F M G +P+ +
Sbjct: 367 ---------------RLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAV 411
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
V L A + LG Q +H YV R+G ++ +G ++I++Y+KCG + A +F M
Sbjct: 412 VKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIV 471
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV-PN---------------------- 320
RDV ++S+I+ H + A+E+F +M V PN
Sbjct: 472 RDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLK 531
Query: 321 --ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
+ M Y + P +H+G +VDLLGR G L A ++ MPI +V GALL ACR+H
Sbjct: 532 IFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIH 591
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
++++G+ ++L H G ++LLSNIYA +W+ V ++R +++ ++K+ G S+
Sbjct: 592 HNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSM 651
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLL 492
+EV G V F++ +R + ++I LL ++ + + D + + + G++L
Sbjct: 652 VEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTGAVL 705
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 176/387 (45%), Gaps = 56/387 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTF 91
S G + ++F Q T +W +M+ G+ + N+P +A AL+ QM+ D + + T
Sbjct: 150 SKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTL 209
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
++ ACA + G H VIR + FD
Sbjct: 210 VSVVSACAQLLNVKAGSCVHGLVIR---------------------------REFD---- 238
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
D+ SL+N YAK+G IA +F KMPEK+ +SWS MI Y + EAL F+ M
Sbjct: 239 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 298
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
F PN +V AL ACA L++G+ IH G ELD + TA+IDMY KC C
Sbjct: 299 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCP 358
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESM 323
+ A +F +P +DV ++ +L+SG A + + ++ +F M +G+ P+ +
Sbjct: 359 DEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAAS 418
Query: 324 SEI-----------YGIEPGVQHY----GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SE+ Y + G L++L + G L A K+ + M + D +
Sbjct: 419 SELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIW 477
Query: 369 GALLNACRVHGDVDLGKETVESLVERS 395
+++ A +HG E + +V+ S
Sbjct: 478 SSMIAAYGIHGRGGEALEIFDQMVKNS 504
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 149/321 (46%), Gaps = 34/321 (10%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + Q+ S + +G L D F K+ + L ++F + +WN+ +R
Sbjct: 18 RSVSQLHSQVFKTGILHDTFFATKLNSL--YAKCASLQAARKVFDETPHPNVHLWNSTLR 75
Query: 62 GFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + + + L+ M+ + P+N+T L+ACA L +G + H
Sbjct: 76 SYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHG-------- 127
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+A N + D+ ++L+ Y+K GQ+ A ++F++
Sbjct: 128 ------------FAKKN----------DEIGSDMFVGSALVELYSKCGQMGEALKVFEEF 165
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
+ V W++M+ GY Q + +EAL F+ M + + +V ++ACA L + G
Sbjct: 166 QRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAG 225
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+H V R + D+ L +++++YAK GC + A ++F MP +DV +++++I+ AN+
Sbjct: 226 SCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANN 285
Query: 300 DQSASAIELFMRMQLEGVVPN 320
+ + A+ LF M + PN
Sbjct: 286 EAANEALNLFHEMIEKRFEPN 306
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K+F + D T Y +I A +F+ +P + W+ MI G+ F
Sbjct: 742 KIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLS 801
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
+LE ++ M G +P+ AL +CA L L +G+ IH ++ G D+ + A++D
Sbjct: 802 SLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVD 861
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
MYAKCG IE A VFD M RD+ ++TS+ISG A++ ++ + F M+ GV+PN
Sbjct: 862 MYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNR 919
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 8/191 (4%)
Query: 129 LLHLYATCNCMDPARKL----FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L+ L+ CN +L F + D T L + YAK + AR++FD+ P N
Sbjct: 7 LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGALDQGRWI 242
W++ + Y + ++E L F+ M +C G P++ I AL ACA L L+ G+ I
Sbjct: 67 VHLWNSTLRSYCREKQWEETLRLFHLM-ICTAGEAPDNFTIPIALKACAGLRMLELGKVI 125
Query: 243 HAYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H + +N I D+ +G+A++++Y+KCG + A VF+ D +TS+++G ++
Sbjct: 126 HGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNND 185
Query: 302 SASAIELFMRM 312
A+ LF +M
Sbjct: 186 PEEALALFSQM 196
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 123/303 (40%), Gaps = 35/303 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ K I HL G D F ++ + GD+ +F + R W +MI
Sbjct: 834 LQRGKVIHQHLVCCGCSNDLFVDAALVDM--YAKCGDIEAARLVFDKMAVRDLVSWTSMI 891
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+A + + M S +PN + +L AC + L G H+ VI+ G+E
Sbjct: 892 SGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFE 951
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V ++ +Y+ C +D AR LFD + +D++ W+++I Y G A +FD+M
Sbjct: 952 FDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQM 1011
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ G RP+H L+AC+ G L++G+
Sbjct: 1012 VK-------------------------------AGVRPSHVTFTCVLSACSHSGLLEEGK 1040
Query: 241 -WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLAN 298
+ + I + ++D+ + G + A + ++MP D + SL+
Sbjct: 1041 MYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRI 1100
Query: 299 HDQ 301
H+
Sbjct: 1101 HNN 1103
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 23/143 (16%)
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
HA + G++ D + T MY I+ A VF+ +PN F + +I G A +
Sbjct: 740 HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799
Query: 303 ASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGV---QHYGC------------L 339
S++EL+ +M +G+ P+ +S + + ++ G QH C L
Sbjct: 800 LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAAL 859
Query: 340 VDLLGRAGMLEAAKKVVREMPIE 362
VD+ + G +EAA+ V +M +
Sbjct: 860 VDMYAKCGDIEAARLVFDKMAVR 882
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 40/195 (20%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTF 91
S G L +LF + R IW++MI + +A ++ QM++ S PNN TF
Sbjct: 454 SKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTF 513
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
IL AC+ HA ++ G + +D R + D +
Sbjct: 514 LSILSACS-----------HAGLVEEGLKIFD-------------------RMVHDYQLR 543
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMING---YVQVDLFKEALEH 207
D + +++ + GQ+ A + ++MP W A++ + +++ + A ++
Sbjct: 544 PDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKN 603
Query: 208 FNYMQLCGFRPNHAG 222
++ P+HAG
Sbjct: 604 LFWLD-----PSHAG 613
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/458 (35%), Positives = 244/458 (53%), Gaps = 63/458 (13%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQ 113
+WNTMIRG++ + P +A LY M+ P NN+TF F+L +CA S L G H+
Sbjct: 1 MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+I+ G+ES FV N L+HLY+ ++ AR LFD S+ RD++S+ ++I GYA+ Q A
Sbjct: 61 IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+F +M + V+ +V L+ACA L
Sbjct: 121 LCLFGEMQNSDEVT-----------------------------------LVAVLSACARL 145
Query: 234 GALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYT 290
GA D G R H Y++ + IL A++DMYAKCG I++A +F + + F +
Sbjct: 146 GAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFN 205
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
S+I+GLA H +AI +F + G+ P+ ESM
Sbjct: 206 SMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNA 265
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
YGI+P ++HYGC+VDLLGR G LE A +V++MP E ++ + ALL+ACR HG+V +G+
Sbjct: 266 YGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEI 325
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+ L+E H +VLLSNI A QW +VR+ MED+ +RK PG S IE+ G +
Sbjct: 326 AGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIH 385
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
FV+ ++++ +EI L+L + LKS + + +V
Sbjct: 386 RFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQV 423
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 148/363 (40%), Gaps = 63/363 (17%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
++ SH+ G D F +I S G+L+ LF R +NTMI+G+AE
Sbjct: 56 EVHSHIIKHGFESDLFVRNALIHLYSV--FGNLNLARTLFDESLVRDLVSYNTMIKGYAE 113
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
N+P A L+ +M SD T +L ACA +G + Q I G + + +
Sbjct: 114 VNQPESALCLFGEMQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI 169
Query: 126 LN-GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L ++ +YA C +D A ++F R++ M K
Sbjct: 170 LTAAVMDMYAKCGSIDSALEIF---------------------------RRVGKNM--KT 200
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI-H 243
+++MI G Q L + A+ F + G +P+ VG L AC G +++G+ +
Sbjct: 201 GFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFE 260
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQS 302
+ + GI+ + ++D+ + GC+E A + MP + + +L+S H
Sbjct: 261 SMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHG-- 318
Query: 303 ASAIELFMRMQLEGVVPNESMSEIYG---IEPGVQH---YGCLVDLLGRAGMLEAAKKVV 356
N + EI G +E QH Y L ++L A E A++V
Sbjct: 319 -----------------NVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVR 361
Query: 357 REM 359
+ M
Sbjct: 362 KVM 364
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 246/467 (52%), Gaps = 32/467 (6%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G H LF + ++ M R A + +A L++ M+ F+P+N + +
Sbjct: 59 LGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFMPDNVALAVV 118
Query: 95 LRAC----ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
L AC + T+ G + HA ++ G E FV L+ +Y M AR++FD
Sbjct: 119 LAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMP 178
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ I+W ++++ Y ++ I A ++F MP ++ VSW+ +I GY V KEAL F
Sbjct: 179 TKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQ 238
Query: 211 M---QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
M C PN + L+ACA G L+ G W+H Y+D+N + + L +IDMYAK
Sbjct: 239 MVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYAK 298
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
CG I+ A VF+ P RD++++T++I GLA H ++ + +F MQ G+ P++
Sbjct: 299 CGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTFVG 358
Query: 322 -------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
SM E Y I P ++HYGC++DLLGR G L A ++++ MP++
Sbjct: 359 VLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRMIQTMPMK 418
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
P+ + GA L+AC+VH V+LG+ + D V++S++YA + W+G+ + R
Sbjct: 419 PNMVIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPWARVMMSSMYAKAQDWSGLARER 478
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGID 469
R M +++K PGCS + +DG V EFV+G + L EI +L ++
Sbjct: 479 REMNSLQMKKTPGCSSVALDGEVHEFVAGGNQHPLCAEICSVLETVE 525
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 26/237 (10%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+L++ Y G+ AR +FD+MP ++ V+ +AM + +AL+ F M GF
Sbjct: 50 TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109
Query: 218 PNHAGIVGALTACAFLGAL----DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P++ + L AC G+ GR +HA++ GIE D+ + T +I +Y + G +
Sbjct: 110 PDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTV 169
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
A VFDSMP + A+ +++ + +A LF+ M VV ++ Y
Sbjct: 170 ARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGY------ 223
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM------PIEPDNYVLGALLNACRVHGDVDLG 384
CLV G + A + R+M + P+ + +L+AC G ++ G
Sbjct: 224 ----CLV------GRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETG 270
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 27/133 (20%)
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L TA++ Y G A +FD MPN+ + A T++ A Q+A A++LF M +G
Sbjct: 48 LPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADG 107
Query: 317 VVPNESMSEIY---------------------------GIEPGVQHYGCLVDLLGRAGML 349
+P+ + GIEP V L+ + G G +
Sbjct: 108 FMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEM 167
Query: 350 EAAKKVVREMPIE 362
A++V MP +
Sbjct: 168 TVARRVFDSMPTK 180
>gi|224115616|ref|XP_002332100.1| predicted protein [Populus trichocarpa]
gi|222874920|gb|EEF12051.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 250/471 (53%), Gaps = 53/471 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+KQI S LT G L+ + + D S +++TT ++NT+ R
Sbjct: 22 QVKQIHSLLTTKGLLF----------YNPNTSPNDNS---------KWKTTLLFNTLNRA 62
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ + + L+ ML PN++TF +++A A SCLF+G H Q I G
Sbjct: 63 YLNFGQHQQTLHLFALMLAHQTPPNSHTFPSVIKA-ATHSCLFIGTSLHTQAINRGVLYD 121
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
F+ LL +Y+ + A K+FD + ++ + + ++ YAK+G + A +F MP+
Sbjct: 122 PFIQTSLLGMYSQFGYLLNACKVFDEISHPCIVEYNATLDAYAKNGDMGSACCLFKSMPK 181
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQL------CGFRPNHAGIVGALTACAFL--- 233
++ VSW+++ING+ + LF EA+ F M L C +PN A V L++CA L
Sbjct: 182 RDVVSWTSVINGFAKNGLFGEAIRLFREMMLHDDVKCCFVKPNEATYVSVLSSCANLDER 241
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G L G+ IH Y+ RN + + + +GT +ID Y K GC+ A V++ M + V + ++I
Sbjct: 242 GVLCIGKQIHGYIVRNEVFVTVFIGTTLIDFYGKVGCLSNAIRVYNQMMVKKVCTWNAII 301
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
S LAN+ + A+++F +M+ EG+ PNE SM+ +G+
Sbjct: 302 SSLANNGREEQALDMFKKMKGEGLCPNEVTFIAVLTACARAKLVEIGLELFQSMAGEFGL 361
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P ++HYGC+VDLLG AG+L A + +R MP EPD LGALL AC++HG +DLG E
Sbjct: 362 VPIMEHYGCVVDLLGMAGLLREASEFIRRMPFEPDASALGALLGACKIHGAIDLGNEVGS 421
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
L+E H G +V LS+I+ +W +R+ M + +R VP CSLI+
Sbjct: 422 RLLELQPQHCGQYVALSSIHVGVNRWGVAADIRKTMVEARIRIVPACSLID 472
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/436 (36%), Positives = 233/436 (53%), Gaps = 35/436 (8%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADT 101
++F + R W T++ G+A +A+ L+ +M+ PN T + A
Sbjct: 199 KVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQM 258
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
L G++ H V G + N L+ ++ C C+ AR++FD +DV SWTS++
Sbjct: 259 GLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMV 318
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
N YAK G + A Q+F MP +N VSWS MI Y Q++ +EA+ F M G P A
Sbjct: 319 NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378
Query: 222 GIVGALTACAFLGALDQGRWIHA-YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V L+ACA LG LD GRWI+ Y+ N I L + LG A+IDM+AKCG + A +FD
Sbjct: 379 TLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDE 438
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M R+V ++ ++I A H QS AI LF +++ E +VP++
Sbjct: 439 MAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEG 498
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
M Y IEP V+HY C++DLLG+ G+LE A +V R MP+E D GALLNACR
Sbjct: 499 RRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACR 558
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
+HG+V++G + LVE G++VL+S IYAS +W+ V+ +R M D G
Sbjct: 559 MHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDR------GT 612
Query: 437 SLIEVDGVVCEFVSGE 452
L DG+ E + GE
Sbjct: 613 VL---DGIATELLLGE 625
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/415 (26%), Positives = 183/415 (44%), Gaps = 83/415 (20%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY-RTTFIWNTMI 60
+++ Q+ + LTV+G + F + FC+ S L+H + ++ TM+
Sbjct: 49 RRLLQLHALLTVTGLAGNGFPAFGFLAFCALSTPPRLAHAAAILARASPGPNAYMLGTMM 108
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA--------------------CAD 100
RGF P +A L+++++R + TF F ++A CA
Sbjct: 109 RGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAA 168
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
C FVG ES V N L+H YA +D A K+FD RDV+SWT+L
Sbjct: 169 LKCGFVG------------ESV-LVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTL 215
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
++GYA++G A ++F +M + + G RPN
Sbjct: 216 VDGYARAGLADEAWRLFCRM------------------------------VVVGGMRPNA 245
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V A++A +G L G +H YV G+ + L A++DM+ KCGC+ A VFD
Sbjct: 246 VTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDG 305
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340
M +DV+++TS+++ A SA +LF M VV + C++
Sbjct: 306 MEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVV----------------SWSCMI 349
Query: 341 DLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+ E A + REM ++P + L ++L+AC G +DLG+ E+ +
Sbjct: 350 AAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYI 404
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 33/249 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL +LF + R W+ MI +++ N+P +A L+++M+ + P + T +L
Sbjct: 325 GDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVL 384
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDV 154
ACA CL +G + I L N L+ ++A C + A KLFD R+V
Sbjct: 385 SACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNV 444
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SW ++I +A GQ A ++F+++ +N V
Sbjct: 445 VSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV---------------------------- 476
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIET 273
P+ +G L +C+ G + +GR ++ IE + +ID+ K G +E
Sbjct: 477 ---PDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEE 533
Query: 274 ACSVFDSMP 282
A V MP
Sbjct: 534 AFEVARGMP 542
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/507 (32%), Positives = 256/507 (50%), Gaps = 55/507 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q + + +HL S L + + II A G L R+F + + W +I
Sbjct: 103 VEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAK-CGCLDDARRMFDEMPTKDMVTWTALI 161
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GF++ N P A L+ QMLR PN++T S +L+A L G HA ++ G++
Sbjct: 162 AGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ 221
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S +V + L+ +YA C MD A+ FD + +SW +LI+G+A+ G+ A + KM
Sbjct: 222 SSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
KN F+P H +ACA +GAL+QG+
Sbjct: 282 QRKN-------------------------------FQPTHFTYSSVFSACASIGALEQGK 310
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+HA++ ++G++L +G ++DMYAK G I+ A VFD + DV ++ ++++G A H
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370
Query: 301 QSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYG 337
++ F +M G+ PNE + + Y +EP V HY
Sbjct: 371 LGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYV 430
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
VDLLGR G+L+ A++ +REMPIEP V GALL ACR+H +++LG E E
Sbjct: 431 TFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPH 490
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
G +LLSNIYAS +W V KVR+ M+++ V+K P CS +E++ V FV+ + T+
Sbjct: 491 DSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQ 550
Query: 458 MEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++EI I +K + + D + V
Sbjct: 551 IKEIRGKWEEISGKIKEIGYVPDTSHV 577
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 24/181 (13%)
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY-VDRNGIELDIILGTAIIDMYA 266
+ +Q P++ L C LG ++QGR +HA+ VD + ++ ++L I++MYA
Sbjct: 75 LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSE 325
KCGC++ A +FD MP +D+ +T+LI+G + +++ A+ LF +M G+ PN ++S
Sbjct: 135 KCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSS 194
Query: 326 I-------YGIEPGVQ------HYG---------CLVDLLGRAGMLEAAKKVVREMPIEP 363
+ +G++PG Q YG LVD+ R G ++AA+ MP +
Sbjct: 195 LLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS 254
Query: 364 D 364
+
Sbjct: 255 E 255
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/496 (34%), Positives = 273/496 (55%), Gaps = 34/496 (6%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q+ H+ +G D F ++ F GD+ + Y++F R +NTMI GFA
Sbjct: 139 QVHCHVLRNGFGSDVFVNNALLNFYCG--FGDVVNAYKVFDESFVRDCVSFNTMINGFAR 196
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR-LGWESYDF 124
K + F ++ +M P+ YTF +L C+ +G H V R LG +
Sbjct: 197 KGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNV 256
Query: 125 VL-NGLLHLYATCNCMDPARKLFDM-SVNRDVIS-WTSLINGYAKSGQISIARQMFDKMP 181
+L N L+ +YA C + A + + + V++ WTSL++ YA G++ +AR++FD+M
Sbjct: 257 LLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMG 316
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E++ VSW+AMI+GY F+EALE F ++ G +P+ +V AL+ACA LGAL+ GR
Sbjct: 317 ERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRR 376
Query: 242 IH-AYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLA 297
IH Y N ++ +A++DMYAKCG I+ A VF + + F Y S+ISGLA
Sbjct: 377 IHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLA 436
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
+H + A LF M L G+ P+ ESM +YG+ P +
Sbjct: 437 HHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEM 496
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDLLGRAG L+ A +++ +MP + + + ALL+AC+VHGDV L + LVE
Sbjct: 497 EHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVASYELVE 556
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
DH +V+LSN+ + T+Q + +R+ +++ ++K PG S +E++ + +F++G++
Sbjct: 557 LQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHKFLAGDK 616
Query: 454 TNVLMEEIVLLLFGID 469
++ + L+L I+
Sbjct: 617 SHPEAKTTELMLRDIN 632
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 186/397 (46%), Gaps = 58/397 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
M+Q QI +H+ V+G + + F S+S L H + LF + F+WN +
Sbjct: 27 MQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTLFTQITNPDIFLWNAI 86
Query: 60 IRGFAEKNEPIK-AFALYKQMLRSDFLPNNYTFSFILRACADT--SCLFVGLICHAQVIR 116
I+ +++ + P + F+L+K ML S LP+++TF F+L+ACA+ S G H V+R
Sbjct: 87 IKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQFGFQVHCHVLR 146
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ S FV N LL+ Y + A K+FD S RD +S+ ++ING+A+ G +S ++
Sbjct: 147 NGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRV 206
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
F +M +C RP+ V L+ C+ L
Sbjct: 207 FGEM------------------------------RGVC-VRPDEYTFVALLSGCSVLEDY 235
Query: 237 DQGRWIHAYVDRNGIEL-----DIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVF-AY 289
GR +H V R EL +++L ++DMYAKCG + A +V + P + V A+
Sbjct: 236 RIGRQVHGLVYR---ELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAW 292
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
TSL+S A + A LF +M VV +M G H GC + L L
Sbjct: 293 TSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMIS------GYSHAGCFQEALELFVKL 346
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
E + ++PD + A L+AC G ++LG+
Sbjct: 347 EG-------LGMKPDEVAVVAALSACARLGALELGRR 376
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/516 (30%), Positives = 271/516 (52%), Gaps = 58/516 (11%)
Query: 14 SGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73
+ T D F V + I CS ++ ++ F +Q ++N +IRG +A
Sbjct: 4 TNTTQDCFLVNQFISACS--NLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQAL 61
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
Y MLR++ +P +Y+FS +++AC G H V + G++S+ FV L+ Y
Sbjct: 62 VHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFY 121
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
+T + +R++FD RDV +WT++I+ + + G ++ A ++FD+MPEKN +W+AMI+
Sbjct: 122 STFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMID 181
Query: 194 GYVQV-------------------------------DLFKEALEHFNYMQLCGFRPNHAG 222
GY ++ +KE + F+ + G P+
Sbjct: 182 GYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVT 241
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ ++ACA LGAL G+ +H Y+ G +LD+ +G+++IDMYAKCG I+ A VF +
Sbjct: 242 MTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQ 301
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+++F + +I GLA H A+ +F M+ + + PN
Sbjct: 302 TKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRR 361
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM + Y I P V+HYGC+VDLL +AG+LE A +++R M +EP++++ GALLN C++H
Sbjct: 362 WFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLH 421
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV-RKVPGCS 437
++++ V++L+ + G + LL N+YA +WN V K+R M+D V ++ PG S
Sbjct: 422 KNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSS 481
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+E++ V F + + + ++ LLL +D L+
Sbjct: 482 WVEINKTVHLFAASDTYHPSYSQLHLLLAELDDQLR 517
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 261/488 (53%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G + ++F + + WN +I G+A+ +A L+K+M++++
Sbjct: 176 ITGYASR---GYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK 232
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T ++ ACA + + +G H+ + G S ++N L+ LY+ C
Sbjct: 233 PDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKC--------- 283
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F + K+ +SW+ MI GY ++L+KEAL
Sbjct: 284 ----------------------GEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEAL 321
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIID 263
F M G PN ++ L ACA LGA+D GRWIH Y+D+ G+ L T++ID
Sbjct: 322 LLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLID 381
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VF+SM +R + A ++I G A H ++ +A ++F RM+ G+ P++
Sbjct: 382 MYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDIT 441
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM++ Y I P ++HYGC++DLLG G+ + A++++ M
Sbjct: 442 FVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTM 501
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + +LL AC++HG+V+LG+ + L++ ++ G +VLLSNIYA+ +WN V
Sbjct: 502 TMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVA 561
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
+R + D ++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F
Sbjct: 562 NIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 621
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 622 DTSEVLQE 629
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/465 (29%), Positives = 229/465 (49%), Gaps = 65/465 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTM 59
++ ++ I + + +G +A+ +++ FC S D L + +F +Q IWNTM
Sbjct: 15 LQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTM 74
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG A ++P+ A LY M+ LPN+YTF F+L++CA G H V++LG+
Sbjct: 75 FRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGY 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E +V L+ +Y A K+FD S +RDV+S+T+LI GYA G I A++MFD+
Sbjct: 135 ELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDE 194
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ VSW+A+I+GY KEAL+ F M +P+ + +V ++ACA G++ G
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLG 254
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H+++D +G+ ++ + A+ID+Y+KCG +ETAC +F + N+DV ++ ++I G +
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL 314
Query: 300 DQSASAIELFMRMQLEGVVPNESM-------------------------SEIYGIEPGVQ 334
+ A+ LF M G PN+ I G+
Sbjct: 315 NLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASS 374
Query: 335 HYGCLVDLLGRAGMLEAAKKV----------------------------------VREMP 360
L+D+ + G +EAA +V +R+
Sbjct: 375 LRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNG 434
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVER-----SLDHEG 400
IEPD+ LL+AC G +DLG+ S+ + L+H G
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYG 479
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 263/478 (55%), Gaps = 57/478 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +LF + + WN MI G+AE +A L+K M++++ P+ T ++
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA + + +G H + G+ S ++N L+ LY+ C
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC------------------- 314
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G++ A +F+++P K+ +SW+ +I GY ++L+KEAL F M G
Sbjct: 315 ------------GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIIDMYAKCGCIET 273
PN ++ L ACA LGA+D GRWIH Y+D+ G+ L T++IDMYAKCG IE
Sbjct: 363 ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEA 422
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A VF+S+ ++ + ++ ++I G A H ++ ++ +LF RM+ G+ P++
Sbjct: 423 AHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSH 482
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+M++ Y + P ++HYGC++DLLG +G+ + A++++ M +EPD +
Sbjct: 483 SGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWC 542
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+LL AC++HG+V+LG+ E+L++ ++ G +VLLSNIYAS +WN V K R + D
Sbjct: 543 SLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKG 602
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F D +EV E
Sbjct: 603 MKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQE 660
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/455 (30%), Positives = 230/455 (50%), Gaps = 64/455 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASD-IGDLSHGYRLFVCLQYRTTFIWNTM 59
++ ++ I + + G +A+ K+I FC S L + +F +Q IWNTM
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG A ++P+ A LY M+ LPN+YTF F+L++CA + G H V++LG
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V L+ +Y ++ A K+FD S +RDV+S+T+LI GYA G I A+++FD+
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ VSW+AMI+GY + +KEALE F M RP+ + +V ++ACA G+++ G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H ++D +G ++ + A+ID+Y+KCG +ETAC +F+ +P +DV ++ +LI G +
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC--------------------- 338
+ A+ LF M G PN+ + I P H G
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVT--MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNA 403
Query: 339 ------LVDLLGRAGMLEAAKKV----------------------------------VRE 358
L+D+ + G +EAA +V +R+
Sbjct: 404 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRK 463
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+ I+PD+ LL+AC G +DLG+ ++ +
Sbjct: 464 IGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 242/467 (51%), Gaps = 32/467 (6%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G H RLF + + M R + +A A++ M+ P+N +
Sbjct: 58 LGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVA 117
Query: 95 LRACAD----TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
L AC T+ G + HA V+ G FV L+ +Y + +R++FD
Sbjct: 118 LGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMP 177
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+R I+W ++++ YA+ G++ A +MF MP ++ VSW+ ++ GY +EAL F
Sbjct: 178 SRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQ 237
Query: 211 M---QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
M C PN + L ACA G L+ G W+HAY++RN + D L +IDMY K
Sbjct: 238 MVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCK 297
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
CG I+ A VF+ P +D+F++T++I GLA H ++ A+ +F MQ G+ P++
Sbjct: 298 CGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVG 357
Query: 322 -------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
SM + I P ++HYGC++DLLGR G L+ A ++R MP++
Sbjct: 358 VLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD 417
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
P+ + GA L+AC+VHG+++LGK E L D V+LS++YA + W G+ + R
Sbjct: 418 PNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARER 477
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGID 469
R M +V+K PGCS IE+ G V EFV+G + EI +L ++
Sbjct: 478 REMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVE 524
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+L++ YA G AR++FD+MPE+ V +AM +V +A+ F M G
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 218 PNHAGIVGALTACAFLGA----LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P++ + AL AC G+ + G+ IHA V +GI D+ + T +I +Y + G +
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+ VFD MP+R + +++ A H + +A E+F+ M VV
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVV 213
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 28/167 (16%)
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L TA++ YA G + A +FD MP + + T++ Q+A AI +F M +G
Sbjct: 47 LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 106
Query: 317 VVPN---------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
V P+ ++ GI P V L+ + G +G L
Sbjct: 107 VFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGEL 166
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+++V +MP A+L+ HG VD E ++ R +
Sbjct: 167 PVSRRVFDDMPSR-STITWNAMLHQYARHGKVDTAYEMFLAMPRRDV 212
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/443 (33%), Positives = 241/443 (54%), Gaps = 27/443 (6%)
Query: 29 FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88
+ SA +GD R F + R WN+MI G+A+ +A +L++ M R L +
Sbjct: 155 YASAGSLGD---SRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADE 211
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+T +L AC+ L G + H+ ++ G + N L+ +Y C + A FDM
Sbjct: 212 FTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDM 271
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++ +SWTS++ AK I AR F+++PEK+ +SW+AMI+ YVQ F EAL+ +
Sbjct: 272 MPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLY 331
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
N M+L G P+ + L+AC LG L G+ IH + N + L +++DMYA+C
Sbjct: 332 NRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARC 391
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G ++TA S+F MP+++V ++ ++I LA H ++ A+ F M + P+E
Sbjct: 392 GQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALL 451
Query: 322 -----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+M +Y ++PGV+HY C+VDLLGR G L A ++++MP+ PD
Sbjct: 452 SACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPD 511
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
V GALL ACR+HG + +GK+ ++ L+E G+ VL+SN+ T QW ++++R+
Sbjct: 512 VVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKL 571
Query: 425 MEDNEVRKVPGCSLIEVDGVVCE 447
M + ++K G S IE + + E
Sbjct: 572 MREWGMKKNMGVSSIETNSNIHE 594
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 200/416 (48%), Gaps = 49/416 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ ++ Q+ +HL V G D + +C+ G + + +LF + F++N++I
Sbjct: 25 VHRLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLI 82
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + + P +A L + M+R LPN +T F+L+ACA ++ H V++LG+
Sbjct: 83 RAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFV 142
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N LLH YA +G + +R+ FD+M
Sbjct: 143 GQVFVGNALLH-------------------------------SYASAGSLGDSRRFFDEM 171
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
++N VSW++MINGY Q +EA F M+ G + +V L AC+ G L+ G+
Sbjct: 172 VDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK 231
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H+++ G +D+IL A++DMY KCG + A + FD MP ++ ++TS++ LA
Sbjct: 232 LVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRA 291
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+A + F ++ + ++ +M Y ++ G H +DL R +L A
Sbjct: 292 SIDAARDWFEQIPEKSIISWNAMISCY-VQGGRFHEA--LDLYNRMKLLGLA-------- 340
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYASTEQ 414
PD + L A+L+AC GD+ GK + + + + GV + L ++YA Q
Sbjct: 341 --PDEFTLAAVLSACGQLGDLASGK-MIHDCIRDNFHNPGVALFNSLLDMYARCGQ 393
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/475 (33%), Positives = 243/475 (51%), Gaps = 56/475 (11%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
RLF + + +WN +IR +A A LY ML PN YT+ F+L+AC+
Sbjct: 64 RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLL 123
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
+ G+ H+ G ES FV L+ YA C + A++LF +RDV++W ++I
Sbjct: 124 AIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIA 183
Query: 163 GYAKSGQ--------------------------------ISIARQMFDKMPEKNAVSWSA 190
G + G + AR++FD M +N VSWSA
Sbjct: 184 GCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSA 243
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
MI GYV D KEAL+ F MQL G P+ ++G L AC+ L AL G H Y+ G
Sbjct: 244 MIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRG 303
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
D ++ A+IDMY+KCG I A VF+ M D+ ++ ++I G H A+ LF
Sbjct: 304 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH 363
Query: 311 RMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRA 346
+ G+ P++ +MS + I P ++H C+VD+LGRA
Sbjct: 364 DLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRA 423
Query: 347 GMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406
G+++ A +R MP EPD + ALL+ACR+H +++LG+E + + + G VLLS
Sbjct: 424 GLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS 483
Query: 407 NIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
NIY++ +W+ +R +D ++K+PGCS IE++G+V FV G+++++ + +I
Sbjct: 484 NIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 538
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 9/217 (4%)
Query: 125 VLNGLLHLYATC---NCMDPARKL----FDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
V N LHL C + A+K+ + N D L Y Q+ +AR++F
Sbjct: 7 VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D++P + + W+ +I Y F A++ ++ M G RPN L AC+ L A++
Sbjct: 67 DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G IH++ G+E D+ + TA++D YAKCG + A +F SM +RDV A+ ++I+G +
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186
Query: 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
+ A++L M+MQ EG+ PN S I G+ P Q
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNS--STIVGVLPTCQ 221
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 138/352 (39%), Gaps = 50/352 (14%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+I SH + G D F ++ F + G L RLF + +R WN MI G +
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDF--YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
A L QM PN+ T +L C CL ++ + +
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC---QCLLYA----RKIFDVMGVRNEVS 240
Query: 126 LNGLLHLYATCNCMDPARKLFDM------------------------------------- 148
+ ++ Y +CM A +F M
Sbjct: 241 WSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 300
Query: 149 --SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
D + +LI+ Y+K G+IS AR++F++M + VSW+AMI GY L EAL
Sbjct: 301 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALG 360
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMY 265
F+ + G +P+ + L++C+ G + +GR W A I + ++D+
Sbjct: 361 LFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDIL 420
Query: 266 AKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
+ G I+ A +MP DV +++L+S H E+ ++Q G
Sbjct: 421 GRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG 472
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 242/467 (51%), Gaps = 32/467 (6%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G H RLF + + M R + +A A++ M+ P+N +
Sbjct: 58 LGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVA 117
Query: 95 LRACAD----TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
L AC T+ G + HA V+ G FV L+ +Y + +R++FD
Sbjct: 118 LGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMP 177
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+R I+W ++++ YA+ G++ A +MF MP ++ VSW+ ++ GY +EAL F
Sbjct: 178 SRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQ 237
Query: 211 M---QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
M C PN + L ACA G L+ G W+HAY++RN + D L +IDMY K
Sbjct: 238 MVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCK 297
Query: 268 CGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----- 321
CG I+ A VF+ P +D+F++T++I GLA H ++ A+ +F MQ G+ P++
Sbjct: 298 CGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVG 357
Query: 322 -------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
SM + I P ++HYGC++DLLGR G L+ A ++R MP++
Sbjct: 358 VLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMD 417
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
P+ + GA L+AC+VHG+++LGK E L D V+LS++YA + W G+ + R
Sbjct: 418 PNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARER 477
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGID 469
R M +V+K PGCS IE+ G V EFV+G + EI +L ++
Sbjct: 478 REMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVE 524
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+L++ YA G AR++FD+MPE+ V +AM +V +A+ F M G
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 218 PNHAGIVGALTACAFLGA----LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P++ + AL AC G+ + G+ IHA V +GI D+ + T +I +Y + G +
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+ VFD MP+R + +++ A H + +A E+F+ M VV
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVV 213
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 28/167 (16%)
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L TA++ YA G + A +FD MP + + T++ Q+A AI +F M +G
Sbjct: 47 LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 106
Query: 317 VVPN---------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
V P+ ++ GI P V L+ + G +G L
Sbjct: 107 VFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGEL 166
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+++V +MP A+L+ HG VD E ++ R +
Sbjct: 167 PVSRRVFDDMPSR-STITWNAMLHQYARHGKVDTAYEMFLAMPRRDV 212
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/441 (34%), Positives = 229/441 (51%), Gaps = 55/441 (12%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
+L++ R+F L + W MI + N + L+ +ML PN T +++
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVK 336
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
C L +G + HA +R G F L+ +L
Sbjct: 337 ECGTAGALELGKLLHAFTLRNG-----FTLSLVL-------------------------- 365
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
T+ I+ Y K G + AR +FD K+ + WSAMI+ Y Q + EA + F +M CG
Sbjct: 366 ATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGI 425
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
RPN +V L CA G+L+ G+WIH+Y+D+ GI+ D+IL T+ +DMYA CG I+TA
Sbjct: 426 RPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHR 485
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------- 321
+F +RD+ + ++ISG A H +A+ELF M+ GV PN+
Sbjct: 486 LFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGL 545
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
M +G P V+HYGC+VDLLGRAG+L+ A ++++ MP+ P+ V G+ L
Sbjct: 546 LQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFL 605
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
AC++H ++ LG+ + + G +VL+SNIYAS +W V +RR M+D + K
Sbjct: 606 AACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVK 665
Query: 433 VPGCSLIEVDGVVCEFVSGER 453
PG S IEV+G++ EF+ G+R
Sbjct: 666 EPGVSSIEVNGLLHEFIMGDR 686
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 137/289 (47%), Gaps = 29/289 (10%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S++G L+ LF ++ + W+TMIR + +A L + M P+
Sbjct: 170 SEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMI 229
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
I A+ + L +G HA V+R G C L
Sbjct: 230 SITHVLAELADLKLGKAMHAYVMRNG------------------KCGKSGVPL------- 264
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
T+LI+ Y K ++ AR++FD + + + +SW+AMI Y+ + E + F M
Sbjct: 265 ----CTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKML 320
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G PN ++ + C GAL+ G+ +HA+ RNG L ++L TA IDMY KCG +
Sbjct: 321 GEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVR 380
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+A SVFDS ++D+ ++++IS A ++ A ++F+ M G+ PNE
Sbjct: 381 SARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNE 429
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 33/269 (12%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
I + +I + + N P A +Y M +D +N+ +L+AC +G H V
Sbjct: 91 IHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFV 150
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
++ G+ FV N L+ +Y+ + AR LFD N+DV+SW+++I Y +SG
Sbjct: 151 VKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSG------ 204
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
L EAL+ M + +P+ G++ A L
Sbjct: 205 -------------------------LLDEALDLLRDMHVMRVKPSEIGMISITHVLAELA 239
Query: 235 ALDQGRWIHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L G+ +HAYV RNG + + L TA+IDMY KC + A VFD + + ++T++
Sbjct: 240 DLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAM 299
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE 321
I+ + + + LF++M EG+ PNE
Sbjct: 300 IAAYIHCNNLNEGVRLFVKMLGEGMFPNE 328
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 36/298 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ +F + + +W+ MI +A+ N +AF ++ M PN T +L
Sbjct: 377 GDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLL 436
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
CA L +G H+ + + G + + + +YA C +D A +LF + +RD+
Sbjct: 437 MICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS 496
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
W ++I+G+A G A ++F++M EAL G
Sbjct: 497 MWNAMISGFAMHGHGEAALELFEEM----------------------EAL---------G 525
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
PN +GAL AC+ G L +G R H V G + ++D+ + G ++ A
Sbjct: 526 VTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEA 585
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQ---SASAIELFMRMQLEGVVPNESMSEIYG 328
+ SMP R ++ + S ++ H A + F+ ++ N MS IY
Sbjct: 586 HELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYA 643
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%)
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
NA S +I Y++ + +A + + YM+ ++ I L AC + + G+ +H
Sbjct: 88 NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVH 147
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+V +NG D+ + A+I MY++ G + A +FD + N+DV +++++I
Sbjct: 148 GFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD 207
Query: 304 SAIELFMRMQLEGVVPNE 321
A++L M + V P+E
Sbjct: 208 EALDLLRDMHVMRVKPSE 225
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 6/158 (3%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
++ GD+ +RLF R +WN MI GFA A L+++M PN+ TF
Sbjct: 475 ANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFI 534
Query: 93 FILRACADTSCLFVG-LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSV 150
L AC+ + L G + H V G+ ++ L +D A +L M +
Sbjct: 535 GALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPM 594
Query: 151 NRDVISWTSLINGYAKSGQISI----ARQMFDKMPEKN 184
++ + S + I + A+Q P K+
Sbjct: 595 RPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKS 632
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/513 (31%), Positives = 264/513 (51%), Gaps = 59/513 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+++ +Q+ + + SG + F +I + + IG H +F + R+ WN+M
Sbjct: 137 LREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARH---VFDGMPERSIVAWNSM 193
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ G+ + + L++++L ++ T +L AC + L +G + ++ G
Sbjct: 194 LSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKG- 252
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ R+ TSLI+ YAK GQ+ AR++FD+
Sbjct: 253 ------------------------------LRRNNTLTTSLIDMYAKCGQVDTARKLFDE 282
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +++ V+WSAMI+GY Q D KEAL F+ MQ PN +V L +CA LGA + G
Sbjct: 283 MDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG 342
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+W+H Y+ + ++L + LGT +ID YAKCG I+ + VF M ++VF +T+LI GLAN+
Sbjct: 343 KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANN 402
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ A+E F M V PN+ SM + IEP ++H
Sbjct: 403 GEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEH 462
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VD+LGRAG LE A + + MP P+ V LL +CR H ++++ ++++E +
Sbjct: 463 YGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLE 522
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H G ++LLSN YA + +VR +++ E++K+PGCSLIE+DGVV EF S + +
Sbjct: 523 PAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEH 582
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEG 488
+EI L + K +K L + + ++ E
Sbjct: 583 KHSKEIHDALDKMMKQIKRLGYVPNTDDARLEA 615
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 193/415 (46%), Gaps = 55/415 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K ++Q+ +HL + L DP ++ + + + +F + + +N MIR
Sbjct: 35 KDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIR 94
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G A K P A L+K+M + +TFS +L+AC+ L G HA +++ G++S
Sbjct: 95 GLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKS 154
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+FV N L+ +YA C + AR +FD R +++W S+++GY K+G ++D++
Sbjct: 155 NEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNG-------LWDEV- 206
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
V LF++ LE + ++ L AC L L+ G
Sbjct: 207 ----------------VKLFRKILE-------LRIEFDDVTMISVLMACGRLANLEIGEL 243
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
I Y+ G+ + L T++IDMYAKCG ++TA +FD M RDV A++++ISG A D+
Sbjct: 244 IGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADR 303
Query: 302 SASAIELFMRMQLEGVVPNE----------SMSEIYGIEPGVQHY-------------GC 338
A+ LF MQ V PNE +M Y V Y
Sbjct: 304 CKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ 363
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
L+D + G ++ + +V +EM + + + AL+ +G+ + E S++E
Sbjct: 364 LIDFYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQGLANNGEGKMALEFFSSMLE 417
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 244/445 (54%), Gaps = 56/445 (12%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
T WNT+I G+ P KA + QM++ ++ T L A A + VG +CH+
Sbjct: 161 TVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHS 220
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
V V+NG A NC +SLI+ YAK G +
Sbjct: 221 LV----------VVNG-----AGINCY----------------MGSSLISMYAKCGLVED 249
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR++F M E+N V W++MI+GY Q+ FKEA+ F MQ+ G + + I +++CA
Sbjct: 250 ARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQ 309
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+GALD GR++HAY D +G+ ++ + ++IDMY+KCG I A +F + RDVF++T++
Sbjct: 310 MGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAM 369
Query: 293 ISGLANHDQSASAIELFMRMQLEG-VVPNE------------------------SMSEIY 327
I G + + A++LF +M+ EG V+PNE MS +Y
Sbjct: 370 IMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVY 429
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
+ P ++HYGC+VDLLGRA +L A++ ++ MPI PD V +LL ACR G+V L +
Sbjct: 430 KLAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFV 489
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E ++E HVLLSN+YA+T +W V ++R M+++ + K PGCS IEVDG V E
Sbjct: 490 AERILELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVDGCVHE 549
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHL 472
F +G+ +++ E I +L GI + L
Sbjct: 550 FFAGDESHLETEAIYNILLGISELL 574
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
++F + R W +MI G+ + + +A L++ M + ++ T + ++ +CA
Sbjct: 252 KVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMG 311
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L +G HA G V N L+ +Y+ C ++ A ++F RDV SWT++I
Sbjct: 312 ALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIM 371
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
G+ +G S A +F +M + V PN
Sbjct: 372 GFTVNGLCSEALDLFAQMEGEGKV------------------------------MPNEVT 401
Query: 223 IVGALTACAFLGALDQG 239
+G LT+C+ G ++QG
Sbjct: 402 FLGVLTSCSHGGLVEQG 418
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML-RSDFLPNNYTF 91
S GD++ + +F L R F W MI GF +A L+ QM +PN TF
Sbjct: 343 SKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTF 402
Query: 92 SFILRACADTSCLFVGLICH-----AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
+L +C+ + G H + V +L + ++ L + A +
Sbjct: 403 LGVLTSCSHGGLVEQGF--HYFQRMSMVYKLAPRIEHY--GCMVDLLGRAKLLTEAEQFI 458
Query: 147 -DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+M + DV+ W SL+ G++ +A + +++ E
Sbjct: 459 KNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILE 495
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 250/454 (55%), Gaps = 26/454 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F ++G +A ++ R+F + R W M+ + + L +
Sbjct: 27 DGFVGTALVGAYAACQ--RVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNK 84
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M RS +P+ + +L C T L G H+ + + + L+++YA+C
Sbjct: 85 MKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMD 144
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
M+ A K++ +D++S T+++ GYAK+G+I IAR +F+ M EK+ VSWSAMI+ Y +
Sbjct: 145 MEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAEN 204
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+ E L FN MQ CG P+ ++ ++ACA +G+LD+ RWIH+ V +G + +
Sbjct: 205 NQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSIC 264
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A+IDM++KCG + A ++F++MP ++V +TS+I+ A H SA+ LF +M+ EGV
Sbjct: 265 NALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVE 324
Query: 319 PN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PN E M + Y IEP +HYGC+VDL+GRA +++ A
Sbjct: 325 PNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVD 384
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
++ M I P+ + G+LL AC +HGD++LG+ + ++E +H+G +VLLSNI+A +
Sbjct: 385 LIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKSGN 444
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
WN +K+R M+ + V K G S +E++ V F
Sbjct: 445 WNNAQKLRVMMKVHGVSKETGYSWLELNCTVHGF 478
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D R H R G + D +GTA++ YA C + A VFD MP RD+ A+ ++
Sbjct: 10 DTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSY 69
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE 321
N + L +M+ VVP++
Sbjct: 70 FNTQNYRETLLLLNKMKRSRVVPDQ 94
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/511 (31%), Positives = 264/511 (51%), Gaps = 41/511 (8%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ + + + + VSG + + ++ + G L ++F + +T +WN +I+
Sbjct: 41 RNLAKTHAQIVVSGFSQKNYILNHLLSLYIS--FGSLGSAQKVFEDITAPSTTVWNQIIK 98
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G K+ L+K+M + N +T+SF+L AC + G H +V+ G+ S
Sbjct: 99 GHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWS 158
Query: 122 YDFVLNGLLHLYATCNC-----MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
+V L++LYA + A LFD + +V+ W SL+ GY + G AR++
Sbjct: 159 NLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKV 218
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
FD+MPE+N +W+ M+ G+ Q K AL F+ M+ G + +V AL+ACA LG L
Sbjct: 219 FDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDL 278
Query: 237 DQGRWIHAYVDRN----GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
G+WIH YV+R + + + L A+I MYA CG ++ A +F+ +P R+ +++S+
Sbjct: 279 TLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSI 338
Query: 293 ISGLANHDQSASAIELFMRMQLEG---VVPNE------------------------SMSE 325
I+G A AI +F M G V P+E SM +
Sbjct: 339 ITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHK 398
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+G+ P ++HYGC+VDLL RAG+L A ++ MP++P+N V GALL+ CR+H + ++
Sbjct: 399 TFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVS 458
Query: 386 ETVESL---VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+ L ++ + G +LL+N+YA+ +W VRR M D V+K G S IE++
Sbjct: 459 HVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518
Query: 443 GVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
GV+C F+ GE T+ + I +L I + +
Sbjct: 519 GVLCSFMVGEETHKDVNLIYEMLGNITRQTQ 549
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 163/487 (33%), Positives = 253/487 (51%), Gaps = 58/487 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPF--AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNT 58
+ KQ+ +HL +G P A K++ + S +G+LS F ++ +T WN
Sbjct: 17 LPHTKQLHAHLFTTGQFRLPISPARSKLLELYALS-LGNLSFAILTFSQIRTPSTNDWNA 75
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IRGF + P AFA YK M+ + T SF+L+ACA + H ++R G
Sbjct: 76 IIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKG 135
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
F+ + LL T+L++ YAK G+I A ++FD
Sbjct: 136 -----FIADALLG--------------------------TTLLDVYAKVGEIDSAEKVFD 164
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M +++ SW+A+I+G+ Q EAL F M++ GF+PN ++GAL+ACA LG +
Sbjct: 165 EMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKE 224
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLA 297
G IH Y+ +++ + +IDMYAKCG ++ A VF+SM R D+ + ++I A
Sbjct: 225 GEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFA 284
Query: 298 NHDQSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQ 334
H + A+ELF +M GV P++ + E G++P V+
Sbjct: 285 MHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVK 344
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYG +VDLLGRAG L A +V MP PD + LL A R H +V++ + LVE
Sbjct: 345 HYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEM 404
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+H G VLLSN+YA+ E+W V +VR M++ +V+KVPG S IE +GV+ +F + +++
Sbjct: 405 GSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKS 464
Query: 455 NVLMEEI 461
+ EI
Sbjct: 465 HESWREI 471
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/416 (36%), Positives = 242/416 (58%), Gaps = 29/416 (6%)
Query: 86 PNNYTFSFILRACADTSCL--FVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPA 142
PN+ TF +L CAD +G + HA +LG ++ + ++ L+ +YA C ++ +
Sbjct: 8 PNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELS 67
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
R FD ++ SW ++I+G+ ++G+I A ++FD+MPE+ +SW+ +ING+V++ LF+
Sbjct: 68 RLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFE 127
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EALE F MQ+ P+ IV L+ACA LGAL G W+H Y + G+ ++ + ++I
Sbjct: 128 EALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLI 187
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
D+Y++CG IE A VF+ M R + ++ S+I GLA + + A+E F MQ +G PN+
Sbjct: 188 DLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDV 247
Query: 323 ------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
M ++ I P ++HYGC+VDL RAG LE A VV+
Sbjct: 248 SFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQN 307
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
MP++P+ V+G+LL ACR GDV+L + + LV + +VLLSNIYA+ +W+G
Sbjct: 308 MPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRWDGA 367
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI--VLLLFGIDKHL 472
K R M+ ++K PG S IE+ + EFV+G++++ E+I +L L D+ L
Sbjct: 368 CKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIYSMLELLSFDQAL 423
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 115/250 (46%), Gaps = 32/250 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F + R W +I GF + +A +++M S P+ T +L
Sbjct: 93 GKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVL 152
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L +GL H ++ G + N L+ LY+ C ++ AR++F+ R ++
Sbjct: 153 SACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLV 212
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G A NG+ + EALEHF+ MQ G
Sbjct: 213 SWNSIIGGLAA--------------------------NGFTE-----EALEHFDLMQKQG 241
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETA 274
F+PN GALTAC+ G +D+G ++R + I I I+D+Y++ G +E A
Sbjct: 242 FKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDA 301
Query: 275 CSVFDSMPNR 284
SV +MP +
Sbjct: 302 MSVVQNMPMK 311
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQ--GRWIHAYVDRNGIEL-DIILGTAIIDMYAK 267
M+L PNH + L+ CA L + G +HAY + G++ ++++GTA++DMYAK
Sbjct: 1 MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327
CG +E + FD + ++ F++ ++I G + + AIE+F M
Sbjct: 61 CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMP-------------- 106
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLG 384
E GV + L++ + G+ E A + R+M +EPD + +L+AC G + LG
Sbjct: 107 --ERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLG 164
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/459 (32%), Positives = 247/459 (53%), Gaps = 33/459 (7%)
Query: 39 SHGYR-LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
SH R +F ++ R WN MI + + + +A LY+++ F TF IL A
Sbjct: 258 SHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGA 317
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C+ L G + H+ ++ G +S V L+++YA C ++ ARK+F+ NRD ++W
Sbjct: 318 CSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAW 377
Query: 158 TSLINGYAKSG---QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-L 213
++LI YA +G AR++FD++ ++ + W+AMI YVQ A++ F M
Sbjct: 378 STLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGA 437
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G +P+ + L ACA LG L + + +HA + + +E ++++ +I+MYA+CG +E
Sbjct: 438 AGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEE 497
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A +F + + V ++T++++ + + + A A++LF M LEGV P++
Sbjct: 498 AERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTH 557
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
M+E++G+ P H+ +VDLLGR+G L AK+++ MP EPD
Sbjct: 558 GGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWM 617
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
L ACR+HG ++LG+ E + E ++ +SNIYA+ W V VR+ ME+
Sbjct: 618 TFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERG 677
Query: 430 VRKVPGCSLIEVDGVVCEFVSG----ERTNVLMEEIVLL 464
++K+PG S IEVDG + EF SG RT+ + EE+ L
Sbjct: 678 LKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRL 716
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 184/384 (47%), Gaps = 56/384 (14%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
G + R+F LQ R WN +I ++ + A ++K+M + D PN+ T+ +
Sbjct: 155 FGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINV 213
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+ + L G HA+++ G++S D+
Sbjct: 214 ISGFSTPEVLPEGRKIHAEIVANGFDS-------------------------------DL 242
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+ T+LIN Y K G AR++FDKM +++ VSW+ MI YVQ F EALE + + +
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDME 302
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
GF+ A V L AC+ + AL QGR +H+++ G++ ++ + TA+++MYAKCG +E A
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEA 362
Query: 275 CSVFDSMPNRDVFAYTSLISGLANH---DQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
VF++M NRD A+++LI A++ + A ++F R+ + +M Y
Sbjct: 363 RKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY---- 418
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP----IEPDNYVLGALLNACRVHGDVDLGKET 387
VQ+ GC V AA K+ REM ++PD A+L AC G + K
Sbjct: 419 -VQN-GCAV----------AAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466
Query: 388 VESLVERSLDHEGVHV-LLSNIYA 410
+ E L+ V L N+YA
Sbjct: 467 HAQISESELESNVVVTNTLINMYA 490
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 58/334 (17%)
Query: 49 QYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
+ R WN MI +A+ +A LY +M ++ TF +L AC S L G
Sbjct: 71 RQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGR 127
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +V G +S+ + N L+ +YA + A+++F RD SW ++I +++SG
Sbjct: 128 EIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSG 187
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
S A ++F +M C +PN + ++
Sbjct: 188 DWSGALRIFKEMK--------------------------------CDMKPNSTTYINVIS 215
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
+ L +GR IHA + NG + D+++ TA+I+MY KCG A VFD M RD+ +
Sbjct: 216 GFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVS 275
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESM---------------------SEIY 327
+ +I + A+EL+ ++ +EG ++ S I
Sbjct: 276 WNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHIL 335
Query: 328 --GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
G++ V LV++ + G LE A+KV M
Sbjct: 336 ERGLDSEVAVATALVNMYAKCGSLEEARKVFNAM 369
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 6/173 (3%)
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFN 209
RD + +LI+ Y K + AR +F+ M ++N VSW+AMI Y Q EAL +
Sbjct: 40 RDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYW 99
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M L G +H V L AC+ +L QGR IH V +G++ L A++ MYA+ G
Sbjct: 100 RMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFG 156
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
+ A +F S+ RD ++ ++I + + A+ +F M+ + + PN +
Sbjct: 157 SVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNST 208
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
+P++ + L +C+ G + +GR +H + + E D ++G A+I MY KC + A S
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63
Query: 277 VFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
VF+SM R+V ++ ++I+ A + S A+ L+ RM L+G+
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGL 106
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 38/228 (16%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+++S++ V+ TL + +A G L RLF + +T W M+ F++
Sbjct: 474 ELESNVVVTNTLINMYA-----------RCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+A L+++M P++ T++ IL C H + GW + +
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCT-----------HGGSLEQGWRYFTDM 571
Query: 126 --LNGLL----HLYATCNCMDPARKLFD-------MSVNRDVISWTSLINGYAKSGQISI 172
L+GL H A + + + +LFD M D ++W + + G++ +
Sbjct: 572 AELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLEL 631
Query: 173 ARQMFDKMPEKNAVS---WSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+++ E + S + AM N Y ++++ M+ G +
Sbjct: 632 GEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLK 679
>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Brachypodium distachyon]
Length = 652
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/440 (35%), Positives = 241/440 (54%), Gaps = 35/440 (7%)
Query: 67 NEPIKAFALYKQMLRS------DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG-W 119
P+ F L+ ++LR+ FLP + FS + ++ A L HA +G +
Sbjct: 120 QPPLSPFHLFSRILRTARGGELPFLP--FAFSPLAKSAAAARSLPAAQAAHAVSFLVGGF 177
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ + FV N L+ Y C + ARK+FD V +DVI WTS++ Y++S + A ++F +
Sbjct: 178 DKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQ 237
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
P K+ V+W+AM+ GY Q + +ALE F+ M G + + GA++ACA LGA+ +
Sbjct: 238 CPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRA 297
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W+ + NG +++++G+ ++DMYAKCG I+ AC VFD M ++V+ Y+S++ GLA+H
Sbjct: 298 AWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASH 357
Query: 300 DQSASAIELFMRM-QLEGVVPNE------------------------SMSEIYGIEPGVQ 334
++ AI LF M + V PN M + YGI P
Sbjct: 358 GRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSAD 417
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY C+VDLLGRAG+++ A +VR M +EP V GALL ACR+HG ++ K E L +
Sbjct: 418 HYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKL 477
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE-VDGVVCEFVSGER 453
+ G +VLLSN A+ +W+ V KVR+ M ++KVP S E DG+V +F +G+
Sbjct: 478 EPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDN 537
Query: 454 TNVLMEEIVLLLFGIDKHLK 473
++ EI L + LK
Sbjct: 538 SHPRTREIKKALLELVAKLK 557
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 138/341 (40%), Gaps = 58/341 (17%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
++ + + D+G +F + W M+ G+A+ P+KA ++ +M
Sbjct: 219 VVAYSRSRDMGS---AEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIG 275
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN-----GLLHLYATCNCMD 140
+ + + + ACA +G + A ++ E F +N GL+ +YA C +D
Sbjct: 276 IDEVSLTGAISACAQ-----LGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLID 330
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
A K+FD ++V +++S++ G A G+ A +F M + V+
Sbjct: 331 EACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVA------------- 377
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGT 259
PNH +G LTAC+ G + GR+ A + D+ GI T
Sbjct: 378 -----------------PNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYT 420
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
++D+ + G ++ A + SM + H A+ R+ + V
Sbjct: 421 CMVDLLGRAGLVDEALDLVRSM-------------TVEPHGGVWGALLGACRIHGKTEVA 467
Query: 320 NESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ ++ +EP G+ +Y L + L AG + KV + M
Sbjct: 468 KVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVM 508
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 161/467 (34%), Positives = 250/467 (53%), Gaps = 59/467 (12%)
Query: 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIK-AFALYKQM 79
F + KI+ F + S G+ + ++F + F +N++IRG P K L+K M
Sbjct: 23 FLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDM 82
Query: 80 LRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
+ + PN +T +F+L+AC+ L G HAQ++R G+ S +V
Sbjct: 83 VGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYV------------- 129
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+SL+N Y+K +I+IAR++FD++ E+N V WSAM++GY ++
Sbjct: 130 ------------------QSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARL 171
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+ EAL F MQ+ G P+ +VG L+ACA +GALD G+W+HAY+ + I +D+ L
Sbjct: 172 GMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELN 231
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
TA+I+MYAKCGCIE A +FD M +D A++S+I GLA H + A+ +F RM+
Sbjct: 232 TALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAK 291
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PN SM E+ GIEP ++HYGC+VDLL R G+++ A
Sbjct: 292 PNHVTFIGILSACAHGGLVSDGKRYWSSMLEL-GIEPSMEHYGCMVDLLCRGGLIDEAYD 350
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+P PD + LL A + + + L+E +++L+N+YAS Q
Sbjct: 351 FALIIP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQ 409
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
V VR+ M++N ++ +PGC+ IEVDG V FV+G+ ++ EEI
Sbjct: 410 LEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEI 456
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 149/454 (32%), Positives = 236/454 (51%), Gaps = 58/454 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++F + R W ++ F ++A + +M D PN T + +L
Sbjct: 167 GQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTPNEVTLASVL 223
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + G H R E V N LL +Y C +D
Sbjct: 224 VACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLD--------------- 268
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+AR++FD + ++ VSW+ MI+G VQ EALE FN MQ+ G
Sbjct: 269 ----------------LARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISG 312
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ + L+ACA LGAL+ GRW+H Y++R GIE D+ +GT+++DMY KCGC++TA
Sbjct: 313 VKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAV 372
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------------- 322
S+F MP ++V ++ +LI+G A H + A++ F RM G+ PNE
Sbjct: 373 SIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSG 432
Query: 323 -----------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M++ Y + P HYGC+VDLLGRAG+++ A V++ MP+ P + L
Sbjct: 433 LVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTL 492
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L+AC+ HG +D ++ + + E G++VLLSN+YA +++W V K R M + ++
Sbjct: 493 LSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQ 552
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
K PG S+IEV+G CEF+ G++ ++ M+++ +L
Sbjct: 553 KEPGSSVIEVNGKTCEFLVGQQNHLYMDDVRAML 586
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 162/368 (44%), Gaps = 67/368 (18%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-----FLPNNYTFSFILRACADTSC-L 104
R +N +I +P AF + +L + P+ YT L+ACA L
Sbjct: 75 RCAHPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGL 134
Query: 105 FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY 164
G HA + G+ V N L+ Y C
Sbjct: 135 REGCQAHAVAEKAGFLGRVPVQNALVTFYGAC---------------------------- 166
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
GQ AR++FD+M E++ VSW+A+++ + + +F EAL M + PN +
Sbjct: 167 ---GQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVT---PNEVTLA 220
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L AC LG G+ +H + R EL++I+G A++DMY KC ++ A VFD + R
Sbjct: 221 SVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLAR 280
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------------------- 323
D+ ++T +ISGL + + A+E+F MQ+ GV P++ +
Sbjct: 281 DIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVH 340
Query: 324 --SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
E GIE V +VD+ + G L+ A + +EMP++ + AL+N +HG
Sbjct: 341 EYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLK-NVSSWNALINGFALHGR- 398
Query: 382 DLGKETVE 389
G+E ++
Sbjct: 399 --GREALD 404
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/498 (31%), Positives = 271/498 (54%), Gaps = 35/498 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+QS + VSG F K++ FC+ + +LS+ +F + T ++ ++
Sbjct: 37 LNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLR-LCNLSYARFIFDRFSFPNTHLYAAVL 95
Query: 61 RGFAEKNEPI---KAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
++ + P+ AF+ ++ M+ RS PN++ + +L++ S F + H + +
Sbjct: 96 TAYSS-SLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFK 154
Query: 117 LGWESYDFVLNGLLHLYATC-NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
G+ Y V LLH YA+ + + AR+LFD R+V+SWT++++GYA+SG IS A
Sbjct: 155 SGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVA 214
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTACAFLG 234
+F+ MPE++ SW+A++ Q LF EA+ F M RPN +V L+ACA G
Sbjct: 215 LFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTG 274
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L + IHA+ R + D+ + +++D+Y KCG +E A SVF + + A+ S+I+
Sbjct: 275 TLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMIN 334
Query: 295 GLANHDQSASAIELF---MRMQLEGVVPN------------------------ESMSEIY 327
A H +S AI +F M++ + + P+ + M+ +
Sbjct: 335 CFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRF 394
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GIEP ++HYGCL+DLLGRAG + A +V+ M ++ D + G+LLNAC++HG +DL +
Sbjct: 395 GIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVA 454
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
V++LV + ++ G +++N+Y W + R+ ++ K PG S IE+D V +
Sbjct: 455 VKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQ 514
Query: 448 FVSGERTNVLMEEIVLLL 465
F S ++++ EEI ++L
Sbjct: 515 FYSLDKSHPETEEIYMIL 532
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 157/500 (31%), Positives = 257/500 (51%), Gaps = 57/500 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ + +G +P ++G + GD+S +F L + W +I G+A
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGM--YAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYA 274
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
++ + A L ++M +++ PN T++ IL+ C L G H +I+ G+ +
Sbjct: 275 QQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIW 334
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V+N L+ +Y C G + AR++F +P ++
Sbjct: 335 VVNALITMYCKC-------------------------------GGLKEARKLFGDLPHRD 363
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+W+AM+ GY Q+ EA++ F MQ G +P+ ALT+C+ L +G+ IH
Sbjct: 364 VVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQ 423
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ G LD+ L +A++ MYAKCG ++ A VF+ M R+V A+T++I+G A H +
Sbjct: 424 QLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCRE 483
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
A+E F +M+ +G+ P++ SM YGI+P V+HY C V
Sbjct: 484 ALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFV 543
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG LE A+ V+ MP +P V GALL+ACR+H DV+ G+ E++++ D +G
Sbjct: 544 DLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDG 603
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
+V LSNIYA+ ++ EKVR+ ME +V K PG S IEVDG V F ++++ +E
Sbjct: 604 AYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKE 663
Query: 461 IVLLLFGIDKHLKSLCFFDD 480
I L + + +K + D
Sbjct: 664 IYAELGKLTEQIKEQGYVPD 683
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 130/262 (49%), Gaps = 12/262 (4%)
Query: 72 AFALYKQMLRSDFLPNNYTFSFI--LRACADTSCL-FVGLICHA-----QVIRLGWESYD 123
AF L + D LP N F + L D S L G + A +I G Y
Sbjct: 37 AFELTTPTVSHDQLPGNAGFRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYS 96
Query: 124 FVLNGLLHLYATCNCMDPARK----LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
V GLL A ++ R+ + + + +L++ YAK G ++ AR++FD
Sbjct: 97 DVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDG 156
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ ++N VSW+AMI +V + EA + + M+L G +P+ V L A L G
Sbjct: 157 IRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVG 216
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ +H + + G+EL+ +GT+++ MYAKCG I A +FD +P ++V +T LI+G A
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276
Query: 300 DQSASAIELFMRMQLEGVVPNE 321
Q A+EL +MQ V PN+
Sbjct: 277 GQVDVALELLEKMQQAEVAPNK 298
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 247/467 (52%), Gaps = 25/467 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +G L RL R W +I G++ +A + ML P+ T
Sbjct: 182 AKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVI 241
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVN 151
+L AC L G H V D ++ L+ +YA C AR++FD +
Sbjct: 242 GMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRG 301
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
R W ++I+GY K G + IAR +FD+M + + ++++++I GY+ +EAL F M
Sbjct: 302 RGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKM 361
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ G ++ +VG LTA A LGAL QGR +HA +++ +E D+ LGTA++DMY KCG +
Sbjct: 362 RRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRV 421
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------- 320
E A F M RDV ++++I GLA + +A+E F M+ +G N
Sbjct: 422 EEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTAC 481
Query: 321 -------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+ M ++ I P ++HYGC++DLLGR+G+L+ A +V+ MP++P+ +
Sbjct: 482 SHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVI 541
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
++L+ACRVH +VDL + L++ + V+V + NIY + QW K+RR ME
Sbjct: 542 WASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEK 601
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
V+K G S I V G V +F+ G+R++ + EIV+++ I + LKS
Sbjct: 602 RGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKS 648
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 175/356 (49%), Gaps = 40/356 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF----CSASDIGDLSHGYRLFVCLQYRTTFIW 56
++Q ++ + +T SG L P + ++ S SD L + LF + +TF++
Sbjct: 12 VRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPC-STFLF 70
Query: 57 NTMIRG-FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC-LFVGLICHAQV 114
+T +R F + P + LY++M D P+ +TF F+ + CA + +G + HA
Sbjct: 71 DTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAAC 130
Query: 115 IR-LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
R L + + + ++H+YA AR+ FD + +DV++WT++I+G AK G + A
Sbjct: 131 FRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDA 190
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
R++ + P +N V+W+ +I+GY + EA++ FN M G P+ ++G L+AC L
Sbjct: 191 RRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQL 250
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG------------------------ 269
L+ G +H V + + L A+IDMYAKCG
Sbjct: 251 KDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAM 310
Query: 270 ----C----IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
C ++ A S+FD M + DV + SLI+G + + A+ LF +M+ G+
Sbjct: 311 IDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGL 366
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 163/504 (32%), Positives = 252/504 (50%), Gaps = 57/504 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQI +T SG D +I G L +F LQ+R W MI G A
Sbjct: 552 KQIHGRITESGLQLDVNLGNALINM--YIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCA 609
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
++ E +KA L+ QM F P TFS IL+ C ++CL G A ++ G+E
Sbjct: 610 DQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYE---- 665
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
D V +LI+ Y+KSG ++ AR++FDKMP ++
Sbjct: 666 ---------------------LDTGVG------NALISAYSKSGSMTDAREVFDKMPSRD 698
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+ +I GY Q L + A+E MQ PN V L AC+ AL++G+ +HA
Sbjct: 699 IVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHA 758
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ + ++ D+ +G A+I MYAKCG A VFD++ ++V + ++I+ A H ++
Sbjct: 759 EIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASK 818
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ F M+ EG+ P+ SM YG+ P ++HYGCLV
Sbjct: 819 ALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLV 878
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
LLGRA + A+ ++ +MP PD V LL ACR+HG++ L + + ++ + +
Sbjct: 879 GLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPA 938
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
V++LLSN+YA+ +W+ V K+RR ME +RK PG S IEVD ++ EF++ +R++ E
Sbjct: 939 VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAE 998
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEV 484
I L + ++ +F D V
Sbjct: 999 IYAELKRLSVEMEEAGYFPDTQHV 1022
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 183/395 (46%), Gaps = 48/395 (12%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K I SH++ G D +I + GDL LF + R WN +I G+A
Sbjct: 350 KLIHSHISEDGHSSDVQIGNALISM--YARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + +A LYKQM P TF +L ACA++S G + H ++R G +S
Sbjct: 408 RREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGH 467
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N L+++Y C G + A+ +F+ ++
Sbjct: 468 LANALMNMYRRC-------------------------------GSLMEAQNVFEGTQARD 496
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+SW++MI G+ Q ++ A + F MQ P++ L+ C AL+ G+ IH
Sbjct: 497 VISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHG 556
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ +G++LD+ LG A+I+MY +CG ++ A +VF S+ +RDV ++T++I G A+ +
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PI 361
AIELF +MQ EG P +S + ++ + + L+ KKV+ +
Sbjct: 617 AIELFWQMQNEGFRPVKST------------FSSILKVCTSSACLDEGKKVIAYILNSGY 664
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
E D V AL++A G + +E + + R +
Sbjct: 665 ELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDI 699
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 150/343 (43%), Gaps = 54/343 (15%)
Query: 41 GYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD 100
+++F + R WN++I +A++ KAF L+++M + F+PN T+ IL AC
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
+ L G H+Q+I+ G++ V N LL +Y C
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKC------------------------ 176
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
G + ARQ+F + ++ VS++ M+ Y Q KE L F M G P+
Sbjct: 177 -------GDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK 229
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+ L A LD+G+ IH G+ DI +GTA++ M +CG +++A F
Sbjct: 230 VTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKG 289
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------SEIYGIEPG 332
+RDV Y +LI+ LA H + A E + RM+ +GV N + S +E G
Sbjct: 290 TADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG 349
Query: 333 ---------------VQHYGCLVDLLGRAGMLEAAKKVVREMP 360
VQ L+ + R G L A+++ MP
Sbjct: 350 KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 179/449 (39%), Gaps = 90/449 (20%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I S + +G DP ++ GDL ++F + R +NTM+ +A
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSM--YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+K + L+ QM P+ T+ +L A S L G H + G S
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V L+ + C +D A++ F + +RDV+ + +LI A+ G
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNV------------- 312
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
EA E + M+ G N + L AC+ AL+ G+ IH+
Sbjct: 313 ------------------EAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
++ +G D+ +G A+I MYA+CG + A +F +MP RD+ ++ ++I+G A +
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414
Query: 305 AIELFMRMQLEGVVPNE----------SMSEIYG---------IEPGVQHYGCLVDLL-- 343
A+ L+ +MQ EGV P + S Y + G++ G L + L
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474
Query: 344 ---------------------------------GRAGMLEAAKKVVREM---PIEPDNYV 367
+ G E A K+ +EM +EPDN
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSL 396
++L+ C+ ++LGK+ + E L
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGL 563
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 122/256 (47%), Gaps = 15/256 (5%)
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
++ + V D+ LIN Y K + A Q+F +MP ++ +SW+++I+ Y Q K+
Sbjct: 52 QMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKK 111
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
A + F MQ GF PN + LTAC L+ G+ IH+ + + G + D + +++
Sbjct: 112 AFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLS 171
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM 323
MY KCG + A VF + RDV +Y +++ A + LF +M EG+ P++
Sbjct: 172 MYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVT 231
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR---EMPIEPDNYVLGALLNACRVHGD 380
Y L+D ML+ K++ + E + D V AL+ C GD
Sbjct: 232 ------------YINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGD 279
Query: 381 VDLGKETVESLVERSL 396
VD K+ + +R +
Sbjct: 280 VDSAKQAFKGTADRDV 295
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 217 RPN---HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
RP A V L C L + + IHA + + DI L +I+MY KC +
Sbjct: 21 RPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD 80
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
A VF MP RDV ++ SLIS A A +LF MQ G +PN+
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNK 128
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 168/488 (34%), Positives = 249/488 (51%), Gaps = 66/488 (13%)
Query: 1 MKQIKQIQSHLTVS---GTLWDPFAVG-KIIGFCSASDIGDLSHGYRLFVCLQYRTTFIW 56
M Q+ QIQ+ L S ++ DP + K+IG C+ D ++ +F L F
Sbjct: 1 MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACA--DHANVRQAALIFAHLASPNIFAH 58
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPN--NYTFSFILRACADTSCLFVGLICHAQV 114
N ++ A+ + A + + S PN +TF+ +L+ACA + + G HA V
Sbjct: 59 NATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMV 118
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+ G+ES FV N SLI+ Y K+G + +AR
Sbjct: 119 TKQGFESNLFVRN-------------------------------SLIDMYFKAGYLLLAR 147
Query: 175 QMFDKM--PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-LCGFRPNHAGIVGALTACA 231
+FD+M ++N V W+AMI GY Q + + +A+E F MQ G PN +V L ACA
Sbjct: 148 HLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACA 207
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LGALD G+WI ++ R + L + LG A+ DMYAKCGCI A VF+ M RDV +++
Sbjct: 208 HLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSI 267
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIY 327
+I GLA + + A F M G PN+ +M + Y
Sbjct: 268 IICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEY 327
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
G+ P V+HYGC+VDLL RAG L+ A+ ++ MP++P+ + GALL CR++ D G+
Sbjct: 328 GVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRV 387
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
V+ ++E DH G +V L+N+Y+S + + K R M +N V K PGCS IEVD V E
Sbjct: 388 VQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHE 447
Query: 448 FVSGERTN 455
F G+ ++
Sbjct: 448 FFMGDLSH 455
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 236/409 (57%), Gaps = 29/409 (7%)
Query: 85 LPNNYTFSFILRACADTS----CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140
+PN+ T +L ACAD+ + L HA+V++L + S+ + L+ Y
Sbjct: 9 VPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPH 67
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
A +LFD R +++ ++I+G ++G ++ A ++FD MP + VSW+A+I+G V+
Sbjct: 68 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 127
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
EA++ F M L G P++ ++ ++ACA +GAL G W+H V R G+E ++ + +
Sbjct: 128 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 187
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+IDMYA+CG +E A VF M R V ++ S+I G A + + A A+E F M+ EG P+
Sbjct: 188 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 247
Query: 321 ------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
+ M YGI ++HYGC+VDLLGR+G LE A +VV
Sbjct: 248 AVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVV 307
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416
MP+ P+ VLGALL CR+HGDV + ++ ++ L+E + +VLLSNIYA+ +W+
Sbjct: 308 TTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWD 367
Query: 417 GVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
G KVR M+ +RK PG S +E+DG V EFVSG+R++ EEI +L
Sbjct: 368 GAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQML 416
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 137/344 (39%), Gaps = 75/344 (21%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +K SHL +S L + F AS + L+ +LF + R+ +NT+I
Sbjct: 41 RVLKLFPSHLLLSTCL---------VRFYFASRLPHLA--LQLFDAMPVRSAVTYNTVIS 89
Query: 62 GFAEKNEPIKAFAL-------------------------------YKQMLRSDFLPNNYT 90
G AF + ++ ML P+ T
Sbjct: 90 GLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVT 149
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
++ ACA+ L +G+ H V+R G E + N L+ +YA C ++ AR++F
Sbjct: 150 LIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMR 209
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R V+SW S+I G+A +G+ + +A+EHF
Sbjct: 210 KRTVVSWNSMIVGFAANGRCA-------------------------------DAVEHFEA 238
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ GF+P+ G LTAC+ G D+G R+ GI + ++D+ + G
Sbjct: 239 MRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSG 298
Query: 270 CIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRM 312
+E A V +MP R + +L++G H A +L +
Sbjct: 299 QLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHL 342
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 13/198 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ RT WN+MI GFA A ++ M R F P+ TF+ +L
Sbjct: 196 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 255
Query: 96 RACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
AC+ D + L+ I E Y V++ L + + R + M +
Sbjct: 256 TACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVD---LLGRSGQLEEAMRVVTTMPM 312
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA---VSWSAMINGYVQVDLFKEALEH 207
+ + +L+ G G + +A Q+ + E + ++ + N Y V + A +
Sbjct: 313 RPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKV 372
Query: 208 FNYMQLCGF--RPNHAGI 223
+ M+ G RP ++ +
Sbjct: 373 RSLMKARGLRKRPGYSAV 390
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 158/492 (32%), Positives = 264/492 (53%), Gaps = 64/492 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G + ++F + + WN MI G+AE KA L+K+M++++
Sbjct: 148 ITGYASR---GYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T + ++ ACA + + +G H+ + G+ S ++N L+ LY+ C
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKC--------- 255
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A ++ + + K+ +SW+ +I GY ++L+KEAL
Sbjct: 256 ----------------------GEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEAL 293
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII----LGTAI 261
F M G PN ++ L ACA LGA+D GRWIH Y+D+ + + L T++
Sbjct: 294 LLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSL 353
Query: 262 IDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
IDMYAKCG I+ A V DS NR + + ++I G A H ++ +A ++F RM+ G+ P+
Sbjct: 354 IDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD 413
Query: 321 E------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
+ SM + Y I P ++HYGC++DLLG +G+ + A++++
Sbjct: 414 DITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMI 473
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416
MP+EPD + +LL AC++HG+++LG+ + L++ ++ G +VLLSNIYA+ +WN
Sbjct: 474 NTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWN 533
Query: 417 GVEKVRRGMEDNEV-RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
V K+R + D + +KVPGCS IE+D VV EF+ G++ + EI +L ++ L+
Sbjct: 534 EVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEA 593
Query: 476 CFFDDGNEVATE 487
F D +EV E
Sbjct: 594 GFVPDTSEVLQE 605
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 134/450 (29%), Positives = 224/450 (49%), Gaps = 72/450 (16%)
Query: 21 FAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM 79
+A +++ FC S D L + +F + IWN M RG A ++P+ A LY M
Sbjct: 7 YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM 66
Query: 80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
+ LPN +TF F+L++CA + G H V++LG++ +V L+ +YA +
Sbjct: 67 ISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRL 126
Query: 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
+ A+K+FD S +RDV+S+T+LI GYA G I A++MFD++P K+ VSW+AMI+GY +
Sbjct: 127 EDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETG 186
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
+K+ALE F M +P+ + + ++ACA G+++ GR +H++++ +G ++ +
Sbjct: 187 NYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVN 246
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
A+ID+Y+KCG +ETAC + + + N+DV ++ +LI G + + A+ LF M G P
Sbjct: 247 ALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 306
Query: 320 NESMSEIYGIEPGVQHYGC-----------------------------LVDLLGRAGMLE 350
N+ + I P H G L+D+ + G ++
Sbjct: 307 NDVT--MLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364
Query: 351 AAKKV-----------------------------------VREMPIEPDNYVLGALLNAC 375
AA +V +R+ IEPD+ LL+AC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424
Query: 376 RVHGDVDLGKETVESL-----VERSLDHEG 400
G +DLG+ S+ + L+H G
Sbjct: 425 SHSGMLDLGRNIFRSMRQDYNITPKLEHYG 454
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 236/409 (57%), Gaps = 29/409 (7%)
Query: 85 LPNNYTFSFILRACADTS----CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140
+PN+ T +L ACAD+ + L HA+V++L + S+ + L+ Y
Sbjct: 98 VPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPH 156
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
A +LFD R +++ ++I+G ++G ++ A ++FD MP + VSW+A+I+G V+
Sbjct: 157 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 216
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
EA++ F M L G P++ ++ ++ACA +GAL G W+H V R G+E ++ + +
Sbjct: 217 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 276
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+IDMYA+CG +E A VF M R V ++ S+I G A + + A A+E F M+ EG P+
Sbjct: 277 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 336
Query: 321 ------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
+ M YGI ++HYGC+VDLLGR+G LE A +VV
Sbjct: 337 AVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVV 396
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416
MP+ P+ VLGALL CR+HGDV + ++ ++ L+E + +VLLSNIYA+ +W+
Sbjct: 397 TTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWD 456
Query: 417 GVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
G KVR M+ +RK PG S +E+DG V EFVSG+R++ EEI +L
Sbjct: 457 GAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQML 505
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 137/344 (39%), Gaps = 75/344 (21%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +K SHL +S L + F AS + L+ +LF + R+ +NT+I
Sbjct: 130 RVLKLFPSHLLLSTCL---------VRFYFASRLPHLA--LQLFDAMPVRSAVTYNTVIS 178
Query: 62 GFAEKNEPIKAFALYKQMLRSDFL-------------------------------PNNYT 90
G AF ++ M D + P+ T
Sbjct: 179 GLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVT 238
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
++ ACA+ L +G+ H V+R G E + N L+ +YA C ++ AR++F
Sbjct: 239 LIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMR 298
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R V+SW S+I G+A +G+ + +A+EHF
Sbjct: 299 KRTVVSWNSMIVGFAANGRCA-------------------------------DAVEHFEA 327
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ GF+P+ G LTAC+ G D+G R+ GI + ++D+ + G
Sbjct: 328 MRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSG 387
Query: 270 CIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRM 312
+E A V +MP R + +L++G H A +L +
Sbjct: 388 QLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHL 431
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ RT WN+MI GFA A ++ M R F P+ TF+ +L
Sbjct: 285 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 344
Query: 96 RACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
AC+ D + L+ I E Y V++ L + + R + M +
Sbjct: 345 TACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVD---LLGRSGQLEEAMRVVTTMPM 401
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA---VSWSAMINGYVQVDLFKEALEH 207
+ + +L+ G G + +A Q+ + E + ++ + N Y V + A +
Sbjct: 402 RPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKV 461
Query: 208 FNYMQLCGFR 217
+ M+ G R
Sbjct: 462 RSLMKARGLR 471
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 161/461 (34%), Positives = 250/461 (54%), Gaps = 59/461 (12%)
Query: 53 TFIWNTMIRGFAEKNEP---IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLF-VGL 108
F+ NT+IR A P ++A A + MLRS LPN +TF F+L+ACA VGL
Sbjct: 93 AFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGL 152
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HA ++ G+ + +V N L+H+Y +C G
Sbjct: 153 QAHAAALKFGFATDQYVSNTLIHMY---SCF---------------------------GG 182
Query: 169 Q-ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
+ + AR +FD+M + + V+WSAMI GYV+ L +A+ F MQ G RP+ ++G L
Sbjct: 183 EFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVL 242
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
A A LGAL+ RW+ +V+R GI + L A+ID AKCG ++ A +VF M R V
Sbjct: 243 AAAADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVV 302
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SM 323
++TS+I LA + A+ +F M+ GV P++ SM
Sbjct: 303 SWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSM 362
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
YGI+P ++HYGC+VD+ GRAGM+E A + + MP++P+ + L+ ACR HG ++L
Sbjct: 363 KMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLEL 422
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
G+ +L+ HE +V+LSN+YA T++W ++RR M ++KVPGCSL+E+DG
Sbjct: 423 GESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDG 482
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V EF++G+ ++ +EI +++ + + LK + +EV
Sbjct: 483 EVHEFIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEV 523
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 89/217 (41%), Gaps = 34/217 (15%)
Query: 23 VGKIIGFCSA-----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
+GK + C+A + GD+ +F ++ RT W ++I A + +A A+++
Sbjct: 266 IGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFE 325
Query: 78 QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV------------ 125
M + P++ F +L AC+ HA ++ G+ +D +
Sbjct: 326 AMKTAGVRPDDVVFIGVLTACS-----------HAGMVDEGYGYFDSMKMEYGIDPKIEH 374
Query: 126 LNGLLHLYATCNCMDPARK-LFDMSVNRDVISWTSLINGYAKSGQI----SIARQMFDKM 180
++ ++ ++ A + + M + + I W +L+ G++ SI R + ++
Sbjct: 375 YGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEY 434
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
P A ++ + N Y +KE E M G +
Sbjct: 435 PAHEA-NYVMLSNVYALTQRWKEKSEIRREMSKRGIK 470
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 168/483 (34%), Positives = 254/483 (52%), Gaps = 31/483 (6%)
Query: 2 KQIKQIQSHLTVSGTL-WDPFAVG-KIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
KQ+ QIQ+ L + L P + K+IG C+A+ +L H +F L F WN +
Sbjct: 25 KQLLQIQAQLITNPPLSLHPNLIAVKLIGACAAN--ANLYHAQLIFAQLPNPNVFSWNAI 82
Query: 60 IRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
I+ A + + L S PN Y ++ +++ACA + GL HA VI+
Sbjct: 83 IKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKS 142
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G ++ + L+ +Y A ++FD RDV+SW ++++GY G + AR++F
Sbjct: 143 GLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVF 202
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-LCGFRPNHAGIVGALTACAFLGAL 236
D+M E++ +SW+AMI GYVQ + +A+E F+ MQ + G P+ +V L+ACA +GAL
Sbjct: 203 DQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGAL 262
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D GRWI +V G L++ LG A+IDMYAKCG +E A +FD M RDV +++++I G
Sbjct: 263 DFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGS 322
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPG 332
H + A + +M GV PNE M + Y I P
Sbjct: 323 GTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPK 382
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
V HYGC++DLL RAG L+ A+ ++ MPIEP+ V GALL CR+H D G+ + L+
Sbjct: 383 VGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKDFRRGERVAQHLL 442
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E ++ G +V ++ AS + + M+ + K PGCS IEV V EF +
Sbjct: 443 ELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSKIEVHNTVHEFKECD 502
Query: 453 RTN 455
T+
Sbjct: 503 NTS 505
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 238/433 (54%), Gaps = 28/433 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLI 109
T W + I +A + M + P + TF +L C D + +G +
Sbjct: 10 TIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSGSETLGDL 69
Query: 110 CHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +LG + ++ V +L +Y+ + AR +FD +++ ++W ++I+GY +SG
Sbjct: 70 LHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSG 129
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ A ++FDKMPE + +SW+AM+NG+V+ +EAL F MQ+ G +P++ I+ AL
Sbjct: 130 QVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALN 189
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LGAL G W+H YV + ++ + ++ID+Y +CGC+E A VFD M R V +
Sbjct: 190 ACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVS 249
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+ S+I G A + + ++ F +MQ EG PN +SM
Sbjct: 250 WNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMK 309
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDL 383
Y I P ++HYGCLVDL RAG LE A KVV+ MP++P+ V+G+LL ACR HG + L
Sbjct: 310 RDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRNHGNNTVL 369
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ ++ L + ++ +V+LSN+YA+ +W G ++RR M+ ++K PG S IE+D
Sbjct: 370 AERLMKHLSDLNVKSHSNYVILSNMYAADAKWEGASRMRRKMKGLGLKKQPGFSSIEIDD 429
Query: 444 VVCEFVSGERTNV 456
F++G+ +V
Sbjct: 430 CTHVFMAGDSAHV 442
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 125/312 (40%), Gaps = 64/312 (20%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL------- 85
S G + +F + + + WNTMI G+ + A L+ +M D +
Sbjct: 95 SKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVN 154
Query: 86 ------------------------PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
P+ L AC + L +GL H V+ +++
Sbjct: 155 GFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKN 214
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
V N L+ LY C C++ AR++FD R V+SW S+I G+A +G
Sbjct: 215 NVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNA----------- 263
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-R 240
E+L +F MQ GF+PN GALTAC+ +G +D+G R
Sbjct: 264 --------------------HESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLR 303
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANH 299
+ + I I ++D+Y++ G +E A V SMP + + SL++ NH
Sbjct: 304 FFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRNH 363
Query: 300 DQSASAIELFMR 311
+ E M+
Sbjct: 364 GNNTVLAERLMK 375
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 22/216 (10%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL- 233
Q ++ + VSW++ I + EA + F M+L G P H + L+ C
Sbjct: 1 QKHNQSTSETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFP 60
Query: 234 -GALDQGRWIHAYVDRNGIELD-IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
G+ G +H Y + G++ + +++GTAI+ MY+K G ++ A VFD M +++ + +
Sbjct: 61 SGSETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNT 120
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
+I G Q +A++LF +M EP + + +V+ + G E
Sbjct: 121 MIDGYMRSGQVHNAVKLFDKMP----------------EPDLISWTAMVNGFVKKGFHEE 164
Query: 352 AKKVVREMPI---EPDNYVLGALLNACRVHGDVDLG 384
A REM I +PD + A LNAC G + LG
Sbjct: 165 ALVWFREMQISGVKPDYVAIIAALNACTNLGALSLG 200
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 254/479 (53%), Gaps = 31/479 (6%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRT---TFIWNTMIRGFAEKNEPIKAFALYKQMLRS 82
++G S + I H L T T W + I +A + M +
Sbjct: 6 VVGITSPALITRKRHANPKIQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLA 65
Query: 83 DFLPNNYTFSFILRACAD--TSCLFVGLICHAQVIRLGWE-SYDFVLNGLLHLYATCNCM 139
PN+ TF IL C D + +G + H +LG + ++ V ++ +Y+ +
Sbjct: 66 GVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRV 125
Query: 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
AR +FD +++ ++W ++I+GY +SGQ+ A +MFDKMPE++ +SW+AMING+V
Sbjct: 126 KKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKG 185
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
+EAL F MQ+ G +P++ I+ AL AC LGAL G W+H YV + ++ +
Sbjct: 186 FHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSN 245
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
++ID+Y +CGC+E A VFD M R V ++ S+I G A + + ++ F +MQ E P
Sbjct: 246 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKP 305
Query: 320 N------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ + M Y I P ++HYGCLVDL RAG LE A K+
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKL 365
Query: 356 VREMPIEPDNYVLGALLNACRVHG-DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
V+ MP++P+ V+G+LL ACR HG + L ++ ++ L + ++ +V+LSN+YA+ +
Sbjct: 366 VQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGK 425
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
W G K+RR M+ ++K PG S IE+D F++G+ +V I +L I +L+
Sbjct: 426 WEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETTNICEVLKLISSNLR 484
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 155/517 (29%), Positives = 270/517 (52%), Gaps = 64/517 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTT------- 53
+ ++ QI + + +G +P + K ++S++ + + + T+
Sbjct: 31 LSKLTQIHAFILKTGLQNNPLILTKFTS--TSSNLNSIHYATSFLFPPSHTTSTPTPSYD 88
Query: 54 -FIWNTMIRGFAE-KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
F++NT+IR +++ ++ +F Y+ MLR PN +TF F+L+ CA L +G H
Sbjct: 89 AFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVH 148
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
V++ G+E VLN L+H+Y C+ +G+
Sbjct: 149 GCVVKFGFEEDVHVLNTLIHMYC---CLGE--------------------DGF------E 179
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
A ++FD P+ + V+WSAMI G+V++ A++ F MQ+ G P+ +V L+ACA
Sbjct: 180 FAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACA 239
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LGAL+ G+W+ +YV++ I + L A+IDM+AKCG ++ A +F M +R + ++TS
Sbjct: 240 DLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTS 299
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIY 327
+I+GLA H + A+ LF M G+ P++ SM +
Sbjct: 300 VIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNF 359
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
I P V+HYGC+VDLL R G ++ A + V++MP EP+ + ++ AC G++ LG+
Sbjct: 360 SIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESI 419
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ L++ HE +VLLSNIYA QW KVR M+ ++KVPG ++IEV+ + E
Sbjct: 420 SKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYE 479
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
FV+G++++ +EI ++ + + +K + ++V
Sbjct: 480 FVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQV 516
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 157/509 (30%), Positives = 269/509 (52%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ KQ+ +H+ G +D F + ++ C+ + G + + +F + ++F +NTMI
Sbjct: 11 MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + +A LY M+ P+ +T+ F+L+AC+ + G+ H V ++G E
Sbjct: 71 RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
DVI SLIN Y K G+I A +F+ M
Sbjct: 131 G-------------------------------DVIVQNSLINMYGKCGEIKNACDVFNGM 159
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQG 239
EK+ SWSA+I + V+++ E L M G R + +V L+AC LG+ D G
Sbjct: 160 DEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLG 219
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH + RN EL++++ T++IDMY K GC+E VF +M ++ ++YT +ISGLA H
Sbjct: 220 KCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIH 279
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ A+++F M EG+ P++ SM + IEP VQH
Sbjct: 280 GRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQH 339
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGR GML+ A ++++ M I+P++ + +LL+AC+VH ++++GK E+L +
Sbjct: 340 YGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLN 399
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
++ G +++L+N+YA ++W+ V K+R + + + + PG SLIE V +FVS +++
Sbjct: 400 QNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSI 459
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
I ++ ++ LK + D ++V
Sbjct: 460 PQWNIIYEMIHQMEWQLKFEGYIPDTSQV 488
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/454 (33%), Positives = 231/454 (50%), Gaps = 58/454 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+ R+F + R W ++ F +A L QM D +PN T + +L
Sbjct: 162 GECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQM---DVVPNEGTLACVL 218
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC G H +R + V N +L +Y C +D
Sbjct: 219 VACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLD--------------- 263
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+AR++FD++ ++ +SW+ MI+G VQ L +ALE FN MQ
Sbjct: 264 ----------------LARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSR 307
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ + L+AC LGAL+ GRW+H Y++R GIE D+ +GT+++DMYAKCGC+ET+
Sbjct: 308 VKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSL 367
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
S+F MP +++ ++ +LI+G A H A+E F RM G+ PN
Sbjct: 368 SIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSG 427
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
ESM Y + P +HYG +VDLLGRAG++ A V + MP+ P + GAL
Sbjct: 428 LVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGAL 487
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L+AC+ H VD ++ + + E GV+ LLSNIYA +W V++VR M + ++
Sbjct: 488 LSACQAHRQVDFSQQILRHVHELESSESGVYALLSNIYAVNHRWADVKRVRGLMSEKGLQ 547
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
K PG S+IEV+G EFV G++ + ++EI +L
Sbjct: 548 KEPGSSVIEVNGKTSEFVVGQKNHKNVDEICAML 581
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 157/367 (42%), Gaps = 71/367 (19%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRS----DFLPNNYTFSFILRACADTSCLFV----- 106
+N +I EP AF + +L + P+ YT L+ACA
Sbjct: 71 FNALISHLTLSGEPSSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAGGDDGGLR 130
Query: 107 -GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYA 165
G HA + G+ V N L+ LY C
Sbjct: 131 EGRQVHAVAEKGGFLGRLPVRNALVTLYGVC----------------------------- 161
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
G+ AR++FD+M ++ VSW+A+++ +V+ F EAL M + PN +
Sbjct: 162 --GECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMDVV---PNEGTLAC 216
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
L AC LGA G+ +H + R +L +I+G A++DMY KC ++ A VFD + RD
Sbjct: 217 VLVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRD 276
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM---------------------- 323
V ++T +ISGL + A+E+F MQ V P++ +
Sbjct: 277 VISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHE 336
Query: 324 -SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
E GIE V LVD+ + G LE + + R+MP++ + AL+N +HG
Sbjct: 337 YIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLK-NLSSWNALINGFALHGH-- 393
Query: 383 LGKETVE 389
G+E +E
Sbjct: 394 -GREALE 399
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+ + ++ G WD ++ + G L +F + + WN +I GFA
Sbjct: 332 RWVHEYIERKGIEWDVHVGTSLVDMYA--KCGCLETSLSIFRKMPLKNLSSWNALINGFA 389
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+A + +M+ S PN +F +L AC CH+ +++ G + ++
Sbjct: 390 LHGHGREALEHFDRMVASGLAPNEVSFIIVLGAC-----------CHSGLVQEGLQLFES 438
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N + +S + + S+++ ++G I A + MP +
Sbjct: 439 MKNS-----------------YKLSPWEE--HYGSVVDLLGRAGLIHEAYSVTKAMPMRP 479
Query: 185 AV-SWSAMIN---GYVQVDLFKEALEHFNYMQ 212
AV +W A+++ + QVD ++ L H + ++
Sbjct: 480 AVFTWGALLSACQAHRQVDFSQQILRHVHELE 511
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 219/374 (58%), Gaps = 32/374 (8%)
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+YA C AR+LFD + +SW +L++GYAK + AR++F +MP+++ VSWSAM
Sbjct: 1 MYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAM 60
Query: 192 INGYVQVDLFKEALEHFNYMQLC-----GFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
I+G V+ +EAL F M+ G R N +V L ACA LG L +GR +H Y+
Sbjct: 61 IDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYL 120
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSAS 304
+ +G L+I L T+++DMYAKCG I A VF ++P N DV + ++I GLA H S
Sbjct: 121 EEHGFPLNIRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRE 180
Query: 305 AIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYGCLVD 341
++++F +M+ GVVP+E E G+ P V+HY CLVD
Sbjct: 181 SLQMFQKMEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVD 240
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
+LGRAG LE A VV+ MP++P VLGALLNAC +HG V+LG+ LV DH+G
Sbjct: 241 VLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGR 300
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
++ LSNIYA +W +K R+ ME+ V+KVPG S I+V +C F++ ++T+ EI
Sbjct: 301 YIGLSNIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGICRFIAQDKTHPGSAEI 360
Query: 462 --VLLLFGIDKHLK 473
+L L +D +K
Sbjct: 361 YALLKLIAMDMKMK 374
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 107/255 (41%), Gaps = 38/255 (14%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM----LRSDFL-PNNYTF 91
DL R+F + R W+ MI G + E +A A+++ M R D + N+ T
Sbjct: 38 DLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTM 97
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
+L ACA L G H + E + F LN L
Sbjct: 98 VSVLGACAHLGDLVRGRKMHRYL-----EEHGFPLNIRLA-------------------- 132
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNA--VSWSAMINGYVQVDLFKEALEHFN 209
TSL++ YAK G I A ++F +P +N + W+A+I G + +E+L+ F
Sbjct: 133 ------TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQ 186
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ G P+ + L+AC G +D+ ++ G+ + ++D+ + G
Sbjct: 187 KMEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVDVLGRAG 246
Query: 270 CIETACSVFDSMPNR 284
+E A V SMP +
Sbjct: 247 RLEEAYGVVKSMPMK 261
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/509 (30%), Positives = 272/509 (53%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ KQ+ +H+ G +D F ++ C+ S G + + +F ++ +F +NTMI
Sbjct: 44 MEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMI 103
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + +A LY +ML P+N+T+ F+L+AC+ L G+ HA V + G E
Sbjct: 104 RGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLE 163
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV NGL I+ Y K G I A +F++M
Sbjct: 164 VDVFVQNGL-------------------------------ISMYGKCGAIEHAGVVFEQM 192
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
EK+ SWS++I + V+++ E L M G R + +V AL+AC LG+ + G
Sbjct: 193 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLG 252
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R IH + RN EL++++ T++IDMY KCG +E VF +M +++ ++YT +I+GLA H
Sbjct: 253 RCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIH 312
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ A+ +F M EG+ P++ M + I+P +QH
Sbjct: 313 GRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQH 372
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDL+GRAGML+ A +++ MPI+P++ V +LL+AC+VH ++++G+ E++ +
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLN 432
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +++L+N+YA ++W V ++R M + + + PG SL+E + V +FVS +++
Sbjct: 433 KHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQ 492
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ E I ++ ++ LK + D ++V
Sbjct: 493 PICETIYDMIQQMEWQLKFEGYTPDMSQV 521
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 6/199 (3%)
Query: 124 FVLNGLLHLYATCNCMDPARK----LFDMSVNRDVISWTSLINGYAKS--GQISIARQMF 177
F G L L C M+ ++ + + + D ++L+ A S G + A +F
Sbjct: 29 FNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIF 88
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
++ E + ++ MI G V +EAL + M G P++ L AC+ L AL
Sbjct: 89 SQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALK 148
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+G IHA+V + G+E+D+ + +I MY KCG IE A VF+ M + V +++S+I A
Sbjct: 149 EGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHA 208
Query: 298 NHDQSASAIELFMRMQLEG 316
+ + + L M EG
Sbjct: 209 SVEMWHECLMLLGDMSGEG 227
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA--KCGCIETACS 276
N G + L C ++++ + +HA++ + G+ D G+ ++ A + G +E ACS
Sbjct: 30 NEQGWLSLLKRCK---SMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACS 86
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYG 328
+F + F Y ++I G N A+ L++ M G+ P+ ++ S +
Sbjct: 87 IFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVA 146
Query: 329 IEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREM 359
++ GVQ + L+ + G+ G +E A V +M
Sbjct: 147 LKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQM 192
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/488 (32%), Positives = 264/488 (54%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S GD+ +LF + + WN MI G+AE +A L+++M++ +
Sbjct: 137 ITGYASR---GDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T+ +L ACA + + +G H+ V G++S ++N L+ LY+ C
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKC--------- 244
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F + K+ +SW+ +I GY ++L+KEAL
Sbjct: 245 ----------------------GEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEAL 282
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIID 263
F M G PN ++ L ACA LGA+D GRWIH Y+D+ G+ L T++ID
Sbjct: 283 LLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 342
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VF+SM ++ + ++ ++I G A H ++ ++ +LF RM+ G+ P++
Sbjct: 343 MYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDIT 402
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM++ Y + P ++HYGC++DLLG +G+ + A++++ M
Sbjct: 403 FVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM 462
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + +LL AC++HG+V+L + ++L++ ++ ++LLSNIYAS +W V
Sbjct: 463 EMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVA 522
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
++R + ++KVPGCS IEVD VV EFV G++ + EI +L ++ L+ F
Sbjct: 523 RIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVP 582
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 583 DTSEVLQE 590
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 220/430 (51%), Gaps = 64/430 (14%)
Query: 26 IIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84
+I C S D L + +F +Q IWNTMIRG A ++P+ + LY M+
Sbjct: 1 LIELCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGL 60
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
LPN+YTF F+L++CA + G H QV++LG++ +V L+ +Y ++ A K
Sbjct: 61 LPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYK 120
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+FD S +RDV+S+T+LI GYA G I A+++FD++P K+ VSW+AMI+GY + +KEA
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEA 180
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
LE F M RP+ + V L+ACA G+++ GR +H++VD +G + ++ + A+ID+
Sbjct: 181 LELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDL 240
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324
Y+KCG +ETAC +F + +DV ++ +LI G + + A+ LF M G PN+
Sbjct: 241 YSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT- 299
Query: 325 EIYGIEPGVQHYGC---------------------------LVDLLGRAGMLEAAKKV-- 355
+ + P H G L+D+ + G +EAA +V
Sbjct: 300 -MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 358
Query: 356 --------------------------------VREMPIEPDNYVLGALLNACRVHGDVDL 383
+R++ IEPD+ LL+AC G +DL
Sbjct: 359 SMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDL 418
Query: 384 GKETVESLVE 393
G+ S+ +
Sbjct: 419 GRHIFRSMTQ 428
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/460 (34%), Positives = 250/460 (54%), Gaps = 60/460 (13%)
Query: 53 TFIWNTMIRGFAEKNEP---IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
F+ NT+IR A P ++A + + MLRS LPN +TF F+L+ACA VG+
Sbjct: 108 AFLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPG--VGVQ 165
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA ++ G+ + +V N L+H+Y +C G+
Sbjct: 166 AHAAALKFGFTTDQYVSNTLIHMY---SCF---------------------------GGE 195
Query: 170 -ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ AR +FD+M + +AV+WSAMI GYV+ L +A+ F MQ G RP+ ++G L
Sbjct: 196 FLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLA 255
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
A A LGAL+ RW+ +V++ GI + L A+ID AKCG ++ A +VF M R + +
Sbjct: 256 AAADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVS 315
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+TS+I LA + A+ +F M+ GV P+ ESM
Sbjct: 316 WTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMR 375
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
YGI+P ++HYGC+VD+ GRAGM+E A + V +MP++P+ + L+ ACR HG ++LG
Sbjct: 376 MAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELG 435
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ +L+ HE +V+LSN+YA T +W ++RR M ++KVPGCSL+E+DG
Sbjct: 436 ETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGE 495
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V EF++G+ ++ +EI +++ + + L+ +EV
Sbjct: 496 VHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEV 535
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 36/176 (20%)
Query: 23 VGKIIGFCSA-----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
+GK + C+A + GDL +F ++ RT W ++I A + +A A+++
Sbjct: 278 IGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFE 337
Query: 78 QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137
+M + P++ F +L AC+ HA ++ G+ G
Sbjct: 338 EMKTAGVRPDDVAFIGVLTACS-----------HAGMVDEGY--------GYFESMRMAY 378
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMI 192
+DP + + +++ + ++G + A + KMP K N + W ++
Sbjct: 379 GIDP-----------KIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLV 423
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/459 (32%), Positives = 246/459 (53%), Gaps = 33/459 (7%)
Query: 39 SHGYR-LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
SH R +F ++ R WN MI + + +A LY+++ F TF IL A
Sbjct: 258 SHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGA 317
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C+ L G + H+ ++ G +S V L+++YA C ++ ARK+F+ NRD ++W
Sbjct: 318 CSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAW 377
Query: 158 TSLINGYAKSG---QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-L 213
++LI YA +G AR++FD++ ++ +SW+AMI YVQ A++ F M
Sbjct: 378 STLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGA 437
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G +P+ + L ACA LG L + + +HA + + +E ++++ +I+MYA+CG +E
Sbjct: 438 AGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEE 497
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A +F + + V ++T++++ + + + A A++LF M LEGV P++
Sbjct: 498 AERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTH 557
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
M+E++ + P H+ +VDLLGR+G L AK+++ MP EPD
Sbjct: 558 GGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWM 617
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
L ACR+HG ++LG+ E + E ++ +SNIYA+ W V VR+ ME+
Sbjct: 618 TFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERG 677
Query: 430 VRKVPGCSLIEVDGVVCEFVSG----ERTNVLMEEIVLL 464
++K+PG S IEVDG + EF SG RT+ + EE+ L
Sbjct: 678 LKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRL 716
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 183/384 (47%), Gaps = 56/384 (14%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
G + R+F LQ R WN +I ++ + A ++K+M + D PN+ T+ +
Sbjct: 155 FGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINV 213
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+ + L G HA+++ G+++ D+
Sbjct: 214 ISGFSTPEVLPEGRKIHAEIVANGFDT-------------------------------DL 242
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+ T+LIN Y K G AR++FDKM +++ VSW+ MI YV F EALE + + +
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDME 302
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
GF+ A V L AC+ + AL QGR +H+++ G++ ++ + TA+++MYAKCG +E A
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEA 362
Query: 275 CSVFDSMPNRDVFAYTSLISGLANH---DQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
VF++M NRD A+++LI A++ + A ++F R+ + +M Y
Sbjct: 363 RKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY---- 418
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMP----IEPDNYVLGALLNACRVHGDVDLGKET 387
VQ+ GC V AA K+ REM ++PD A+L AC G + K
Sbjct: 419 -VQN-GCAV----------AAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466
Query: 388 VESLVERSLDHEGVHV-LLSNIYA 410
+ E L+ V L N+YA
Sbjct: 467 HAQISESELESNVVVTNTLINMYA 490
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 58/334 (17%)
Query: 49 QYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
+ R WN MI +A+ +A LY +M ++ TF +L AC S L G
Sbjct: 71 RQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGR 127
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +V G +S+ + N L+ +YA + A+++F RD SW ++I +++SG
Sbjct: 128 EIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSG 187
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
S A ++F +M C +PN + ++
Sbjct: 188 DWSGALRIFKEMK--------------------------------CDVKPNSTTYINVIS 215
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
+ L +GR IHA + NG + D+++ TA+I+MY KCG A VFD M RD+ +
Sbjct: 216 GFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVS 275
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESM---------------------SEIY 327
+ +I + A+EL+ ++ +EG ++ S I
Sbjct: 276 WNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHIL 335
Query: 328 --GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
G++ V LV++ + G LE A+KV M
Sbjct: 336 ERGLDSEVAVATALVNMYAKCGSLEEARKVFNAM 369
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 37/242 (15%)
Query: 83 DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
D P+N TF +L +C+ + G H ++ +E V N L+ +Y C+
Sbjct: 2 DRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCD----- 56
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDL 200
SL++ AR +F+ M ++N VSW+AMI Y Q
Sbjct: 57 ----------------SLVD----------ARSVFESMDWRQRNVVSWNAMIAAYAQNGH 90
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
EAL + M L G +H V L AC+ +L QGR IH V +G++ L A
Sbjct: 91 STEALVLYWRMNLQGLGTDHVTFVSVLGACS---SLAQGREIHNRVFYSGLDSFQSLANA 147
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++ MYA+ G + A +F S+ RD ++ ++I + + A+ +F M+ + V PN
Sbjct: 148 LVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPN 206
Query: 321 ES 322
+
Sbjct: 207 ST 208
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 75/184 (40%), Gaps = 42/184 (22%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+++S++ V+ TL + +A G L RLF + +T W M+ F++
Sbjct: 474 ELESNVVVTNTLINMYA-----------RCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+A L+++M P++ T++ IL C H + GW +
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCT-----------HGGSLEQGWRYF--- 568
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP-EKN 184
+ L+A D + ++++ +SG++ A+++ + MP E +
Sbjct: 569 -TDMAELHALAPTAD---------------HFAAMVDLLGRSGRLFDAKELLESMPFEPD 612
Query: 185 AVSW 188
V+W
Sbjct: 613 PVAW 616
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 221/412 (53%), Gaps = 36/412 (8%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
++ GF + + A+ R FL F A AD C+ + + A
Sbjct: 105 RALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLFF---AMADDRCVAIDAVAAAAAFS 161
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
+ D L H R++ + V DV++W +L++ YAK G + A +
Sbjct: 162 ACAQIGDLALGREAH-----------RRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRW 210
Query: 177 FDKMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
F +MP +KN VSW+ M++ + + +EAL F MQ RP+ A V AL ACA LGA
Sbjct: 211 FRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGA 270
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
LD GRW+HAY+ R G D ++G A++DMYAKCG ++ A VFD M RDV+ YTS+I G
Sbjct: 271 LDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILG 330
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------ESMSEIYGI-EPGVQHY 336
LA H + A+ LF MQ GV PN E + ++ + EP ++HY
Sbjct: 331 LAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPEPRIEHY 390
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VD+LGRAG L+ A++++ MP+ D + +LL ACR HGDV+ + + V +
Sbjct: 391 GCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMRRRVADA- 449
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
G +VL+SN YAS + KVR M NE+ KVPGCSLIE+DGVV EF
Sbjct: 450 -DAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLIEIDGVVHEF 500
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 40/282 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFI-WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
GD + +R F + + + WNTM+ FA E +A AL+++M + P++ TF
Sbjct: 202 GDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAA 261
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L ACA L G HA + R+G + V N LL +YA C +D A ++FD RDV
Sbjct: 262 LGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDV 321
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
++TS+I G A G+ ++AL F MQ
Sbjct: 322 YTYTSMILGLAMHGR-------------------------------GEDALSLFAGMQRA 350
Query: 215 GFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G PN ++G LTAC G +++G + ++A E I ++DM + G ++
Sbjct: 351 GVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMP-----EPRIEHYGCVVDMLGRAGRLDK 405
Query: 274 ACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQL 314
A + +MP + D ++SL++ H A E MR ++
Sbjct: 406 AEELIAAMPVHSDALIWSSLLAACRAHGDVERA-ERVMRRRV 446
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 235/409 (57%), Gaps = 29/409 (7%)
Query: 85 LPNNYTFSFILRACADTS----CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140
+PN+ T +L ACAD+ + L HA+V++L + S+ + L+ Y
Sbjct: 64 VPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPH 122
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
A +LFD R +++ ++I+G ++G ++ A ++FD MP + VSW+A+I+G V+
Sbjct: 123 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 182
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
EA+ F M L G P++ ++ ++ACA +GAL G W+H V R G+E ++ + +
Sbjct: 183 HDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 242
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+IDMYA+CG +E A VF M R V ++ S+I G A + + A A+E F M+ EG P+
Sbjct: 243 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 302
Query: 321 ------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
+ M YGI ++HYGC+VDLLGR+G LE A +VV
Sbjct: 303 AVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVV 362
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416
MP+ P+ VLGALL CR+HGDV + ++ ++ L+E + +VLLSNIYA+ +W+
Sbjct: 363 TTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWD 422
Query: 417 GVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
G KVR M+ +RK PG S +E+DG V EFVSG+R++ EEI +L
Sbjct: 423 GAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQML 471
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 137/344 (39%), Gaps = 75/344 (21%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +K SHL +S L + F AS + L+ +LF + R+ +NT+I
Sbjct: 96 RVLKLFPSHLLLSTCL---------VRFYFASRLPHLA--LQLFDAMPVRSAVTYNTVIS 144
Query: 62 GFAEKNEPIKAFALYKQMLRSDFL-------------------------------PNNYT 90
G AF ++ M D + P+ T
Sbjct: 145 GLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVT 204
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
++ ACA+ L +G+ H V+R G E + N L+ +YA C ++ AR++F
Sbjct: 205 LIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMR 264
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R V+SW S+I G+A +G+ + +A+EHF
Sbjct: 265 KRTVVSWNSMIVGFAANGRCA-------------------------------DAVEHFEA 293
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ GF+P+ G LTAC+ G D+G R+ GI + ++D+ + G
Sbjct: 294 MRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSG 353
Query: 270 CIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRM 312
+E A V +MP R + +L++G H A +L +
Sbjct: 354 RLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHL 397
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 13/198 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ RT WN+MI GFA A ++ M R F P+ TF+ +L
Sbjct: 251 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 310
Query: 96 RACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
AC+ D + L+ I E Y V++ L + + R + M +
Sbjct: 311 TACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVD---LLGRSGRLEEAMRVVTTMPM 367
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA---VSWSAMINGYVQVDLFKEALEH 207
+ + +L+ G G + +A Q+ + E + ++ + N Y V + A +
Sbjct: 368 RPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKV 427
Query: 208 FNYMQLCGF--RPNHAGI 223
+ M+ G RP ++ +
Sbjct: 428 RSLMKARGLRKRPGYSAV 445
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 162/484 (33%), Positives = 249/484 (51%), Gaps = 56/484 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K KQ+ + + ++G +D K++ D LS LF + F+WN +I
Sbjct: 91 IKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCD--SLSSARLLFDRIPKHNIFLWNVLI 148
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+A A LY QM +P+N+TF F+L+ACA S + G H V++ GWE
Sbjct: 149 RGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWE 208
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV L+ +YA C C+ AR++FD + RD + W S++ Y+++G
Sbjct: 209 KDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH----------- 257
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+ S M+ L G RP A +V A++A A AL QGR
Sbjct: 258 PDACLSLCSEMV--------------------LTGLRPTEATLVTAISASADNAALPQGR 297
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H R E + TA++DMYAKCG + A ++F+ + + V ++ ++I+G A H
Sbjct: 298 ELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHG 357
Query: 301 QSASAIELFMRMQL-----------------------EGVVPNESMSEIYGIEPGVQHYG 337
+ A++LF M EG + E+M Y I+P VQHY
Sbjct: 358 HATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYT 417
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLLG +G L+ A ++ +M + PD+ V GALLN+C++H +V+LG+ +E L+E D
Sbjct: 418 CMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD 477
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
G +V+LSNIYA +W GV K+R+ M D ++K CS IEV V F+SG+ ++ L
Sbjct: 478 DAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPL 537
Query: 458 MEEI 461
+EI
Sbjct: 538 SDEI 541
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 31/237 (13%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P ++ +L++C + G HAQV G+ + L++LY C+ + AR L
Sbjct: 73 PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
FD ++ W LI GYA +G A Q++ +M
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQM------------------------- 167
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
F+Y G P++ L ACA L A++ GR IH +V + G E D+ +G A+IDMY
Sbjct: 168 --FDY----GLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMY 221
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
AKCGC+ +A VFD + RD + S+++ + + + + L M L G+ P E+
Sbjct: 222 AKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEA 278
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P ++ L +C A+ G+ +HA V G D ++ T ++++Y C + +A +
Sbjct: 73 PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGI 329
FD +P ++F + LI G A + +A++L+ +M G+VP+ ++ + + I
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192
Query: 330 EPGVQHY---------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
E G + + L+D+ + G + +A++V ++ + D + ++L A
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVLWNSMLAA 251
Query: 375 CRVHGDVD 382
+G D
Sbjct: 252 YSQNGHPD 259
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/472 (33%), Positives = 240/472 (50%), Gaps = 37/472 (7%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G H LF + M R A + +A A++ ML LP+N +
Sbjct: 60 LGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVLPDNVALAVA 119
Query: 95 LRACADTSCLFVGL----------ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
L AC T L + HA ++ G FV L+ LY + +R+
Sbjct: 120 LAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGEYGELLVSRR 179
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
LFD + +SW ++++ Y + + A ++F MP+++ VSW+ +I GY + F EA
Sbjct: 180 LFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEA 239
Query: 205 LEHFNYM---QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
LE F M C PN I L ACA G L+ G W+HAY+DRN + D L ++
Sbjct: 240 LELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMNDDGSLDRSL 299
Query: 262 IDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
IDMYAKCG IE A VF+ P RD++++T++I GLA H ++A A+ +F MQ G+ P+
Sbjct: 300 IDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPD 359
Query: 321 ESMS-----------------------EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
+ E Y I P ++HYGC++DLLGR G L+ A ++R
Sbjct: 360 DVTLVGVLNACAHGGLVDEGLHHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYSIIR 419
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
M ++P+ + GA LNAC+VH +V+LG+ L D V+LS++YA + W+
Sbjct: 420 TMRMKPNAVIWGAFLNACKVHSNVELGEIAAAELTRLDPDDPWAKVMLSSLYAKAQDWSS 479
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGID 469
+ + RR M +++K PGCS IE+DG V EFV+G + EI +L ++
Sbjct: 480 LARERREMNSLQMKKTPGCSSIELDGEVHEFVAGSFQHPQHGEICTVLENVE 531
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 48/287 (16%)
Query: 11 LTVSGTLWDPFAVGKIIG-------FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
L VS L+D V + + S++GD Y LF+ + R WNT+I G+
Sbjct: 174 LLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGD---AYELFLAMPKRDVVSWNTIIAGY 230
Query: 64 AEKNEPIKAFALYKQMLRSD---FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
++A L++QM+ PN T S +L ACA CL G+ HA + R
Sbjct: 231 CLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMN 290
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSV-NRDVISWTSLINGYAKSGQISIARQMFDK 179
+ L+ +YA C ++ A ++F+ + RD+ SWT++I G A G+ +
Sbjct: 291 DDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAA-------- 342
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+AL F MQ G RP+ +VG L ACA G +D+G
Sbjct: 343 -----------------------DALRMFGMMQDNGIRPDDVTLVGVLNACAHGGLVDEG 379
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM---PN 283
+++ I I +ID+ + G ++ A S+ +M PN
Sbjct: 380 LHHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYSIIRTMRMKPN 426
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 117/265 (44%), Gaps = 42/265 (15%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+L++ YA G+ AR +FD+MP+ V+ +AM + +AL F M G
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVL 110
Query: 218 PNHAGIVGALTAC-------AFLG---ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
P++ + AL AC A LG A G+ +HA + +GI D+ + T +I +Y +
Sbjct: 111 PDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGE 170
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327
G + + +FD+MP + ++ +++ H A ELF+ M VV ++ Y
Sbjct: 171 YGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGY 230
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM------PIEPDNYVLGALLNACR----- 376
CL+ G A ++ R+M P+ P+ + +L AC
Sbjct: 231 ----------CLI------GRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCL 274
Query: 377 -----VHGDVDLGKETVESLVERSL 396
VH +D + + ++RSL
Sbjct: 275 ETGIWVHAYIDRNRMNDDGSLDRSL 299
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L TA++ YA G A +FD MP+ + T++ A Q+A A+ +F M +G
Sbjct: 49 LPTALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADG 108
Query: 317 VVPN 320
V+P+
Sbjct: 109 VLPD 112
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 230/413 (55%), Gaps = 36/413 (8%)
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT---------SCLFVGLICHAQ 113
A + P A + +R+ P +TFS +L A A + +CL + HAQ
Sbjct: 43 LARRGAPAAASLVLYSRIRAVTTPTPFTFSLLLAALASSSFTTSSTGSACL-AAPVAHAQ 101
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
++ G ++ V N LL LY T + AR++FD DV SW ++++GY KSG ++ A
Sbjct: 102 ALKCGALAHSVVTNSLLKLYCTLGLLPHARRVFDSGAALDVASWNTMVSGYGKSGDLAAA 161
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
R++F +MP +N VSWSAMI+ V + F EAL F+ M GF+P+ +V L ACA L
Sbjct: 162 REVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMMREGFKPDVVVLVSMLKACAHL 221
Query: 234 GALDQGRWIHAYVDRNGI---ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
GA+ +GRW H Y++ G + ++++ TA++DMY KCGC+E A VFD + RDV +
Sbjct: 222 GAVKRGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWN 281
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNESM-----------------SEIY------ 327
S+I GLA + A+ELF RM EG VPN+S EI+
Sbjct: 282 SMIGGLAMNGHGDRALELFQRMLQEGFVPNQSTFAGALCACTHTGHVDEGREIFKSMWHH 341
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GIEP +HYGCL DLLGRAG + A+ V+ +MP+EP GAL+ +C++H D+ +G+
Sbjct: 342 GIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPMEPHASQWGALMLSCQMHNDITVGERV 401
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+ L+E H G + +L N+YA W+ +R+ M + +K G SL+E
Sbjct: 402 GKRLIELEPHHGGRYAILFNLYAVNGLWDDARAIRQMMVEKGAKKDAGLSLVE 454
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 135/365 (36%), Gaps = 84/365 (23%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN--------------------------- 67
+G L H R+F WNTM+ G+ +
Sbjct: 124 LGLLPHARRVFDSGAALDVASWNTMVSGYGKSGDLAAAREVFGRMPGRNLVSWSAMIDAL 183
Query: 68 ----EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
E +A +++ QM+R F P+ +L+ACA + G H + G+
Sbjct: 184 VHAEEFGEALSVFDQMMREGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQ 243
Query: 124 ---FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V L+ +Y C CM+ A +FD RDV+ W S+I G A +G A ++F +M
Sbjct: 244 RNVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRM 303
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
++ GF PN + GAL AC G +D+GR
Sbjct: 304 LQE-------------------------------GFVPNQSTFAGALCACTHTGHVDEGR 332
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
I + +GIE + D+ + G + A +V MP + H
Sbjct: 333 EIFKSMWHHGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMP-------------MEPHA 379
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH---YGCLVDLLGRAGMLEAAKKVVR 357
A+ L +M + V + +EP H Y L +L G+ + A + +R
Sbjct: 380 SQWGALMLSCQMHNDITVGERVGKRLIELEP--HHGGRYAILFNLYAVNGLWDDA-RAIR 436
Query: 358 EMPIE 362
+M +E
Sbjct: 437 QMMVE 441
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 266/487 (54%), Gaps = 66/487 (13%)
Query: 36 GDLSHGY-----RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNY 89
G +S GY +LF + + WN MI G+ E +A L+K+M+ ++ P+
Sbjct: 164 GYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDES 223
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T ++ ACA + + +G H+ + G+ S ++N L+ LY+
Sbjct: 224 TMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYS--------------- 268
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
K G++ A ++FD + K+ +SW+ +I GY ++L+KEAL F
Sbjct: 269 ----------------KFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQ 312
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN--GIELDII-LGTAIIDMYA 266
M G PN ++ L ACA LGA+D GRWIH Y+++ G+ ++ L T++IDMYA
Sbjct: 313 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYA 372
Query: 267 KCGCIETACSVFDS-MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---- 321
KCG I+ A VFDS M NR + + ++ISG A H ++ +A ++F RM++ G+ P++
Sbjct: 373 KCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFV 432
Query: 322 --------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
SM+ Y I P ++HYGC++DLLG +G+ + A++++ MP+
Sbjct: 433 GLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPM 492
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
EPD + +LL AC++HG+++LG+ + L++ + G +VLLSNIYA+ +WN V K+
Sbjct: 493 EPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKI 552
Query: 422 RRGMEDNEV-RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
R + D + +KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F D
Sbjct: 553 RALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPD 612
Query: 481 GNEVATE 487
+EV E
Sbjct: 613 TSEVLQE 619
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 236/468 (50%), Gaps = 72/468 (15%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMIR 61
++ I + + +G +A+ K++ FC S D + +F +Q IWNTM R
Sbjct: 3 SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G A ++P+ A LY M+ LP++YTF F+L++CA + G H V++LG++
Sbjct: 63 GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+V L+ +YA ++ ARK+FD+S +RDV+S+T+LI GY G I A+++FD++P
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFN-YMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ VSW+AMI+GYV+ +KEALE F M + RP+ + +V ++ACA +++ GR
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H++++ +G ++ + A+ID+Y+K G +ETAC +FD + N+DV ++ +LI G + +
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC---------------------- 338
A+ LF M G PN+ + I P H G
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVT--MLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360
Query: 339 ------LVDLLGRAGMLEAAKKV-----------------------------------VR 357
L+D+ + G ++AA++V +R
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMR 420
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESL-----VERSLDHEG 400
IEPD+ LL+AC G +DLG+ S+ + L+H G
Sbjct: 421 MNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYG 468
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 171/551 (31%), Positives = 273/551 (49%), Gaps = 96/551 (17%)
Query: 1 MKQIKQIQSHLTVSGTLWDP-FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ ++ Q+ S L VSG P FA I CS S LF L + F NT+
Sbjct: 20 LHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVT--FPRATFLFDHLHHPDAFHCNTI 77
Query: 60 IRGFAEKNEPIKAFALYK-QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
IR +A K + A Y +ML PN+YTF +++ C D GL HA++++ G
Sbjct: 78 IRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFG 137
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ S F N L+ +Y+ + AR +FD S D++S+ S+I+GY K+G+I AR++F+
Sbjct: 138 FGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFN 197
Query: 179 KMP-------------------------------EKNAVSWSAMINGYVQVDLFKEALEH 207
+MP E++AVSW+ MI+G +V A++
Sbjct: 198 EMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKF 257
Query: 208 FNYM-------------------------------QLCGFR---PNHAGIVGALTACAFL 233
F+ M ++ R PN A +V LTACA L
Sbjct: 258 FDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANL 317
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G L G W+H+++ N I+ D++L T ++ MYAKCG ++ A VFD MP R V ++ S+I
Sbjct: 318 GKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMI 377
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGI 329
G H A+ELF+ M+ G PN++ M +Y I
Sbjct: 378 MGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKI 437
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EP V+HYGC+VDLL RAG++E +++++R +P++ + + GALL+ C H D +LG+ +
Sbjct: 438 EPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAK 497
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
+E G ++LLSN+YA+ +W+ VE VR +++ ++K SL+ ++ ++V
Sbjct: 498 RFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLVHLEDFESKYV 557
Query: 450 ---SGERTNVL 457
SG R ++
Sbjct: 558 KNNSGYRKKIM 568
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 232/470 (49%), Gaps = 58/470 (12%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q +H+ G DPF +I S+S + D + RLF + + W MI GF
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFAS--RLFDGAEDKDVVTWTAMIDGFVR 181
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD-F 124
+A + +M ++ N T +L+A + G H + G D F
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ + L+ +Y C+C D A +++FD+MP +N
Sbjct: 242 IGSSLVDMYGKCSCYDDA-------------------------------QKVFDEMPSRN 270
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+W+A+I GYVQ F + + F M PN + L+ACA +GAL +GR +H
Sbjct: 271 VVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+ +N IE++ GT +ID+Y KCGC+E A VF+ + ++V+ +T++I+G A H +
Sbjct: 331 YMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARD 390
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
A +LF M V PNE SM + +EP HY C+V
Sbjct: 391 AFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMV 450
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DL GR G+LE AK ++ MP+EP N V GAL +C +H D +LGK +++ H G
Sbjct: 451 DLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSG 510
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
+ LL+N+Y+ ++ W+ V +VR+ M+D +V K PG S IEV G +CEF++
Sbjct: 511 RYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIA 560
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 182/410 (44%), Gaps = 72/410 (17%)
Query: 3 QIKQIQSHLTVSGTLW---DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+KQI L S + D F + C+A+ + RL LQ + +W+++
Sbjct: 16 HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAAT--QFRYARRLLCQLQTLSIQLWDSL 73
Query: 60 IRGFA---EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC---ADTSCLFVGLICHAQ 113
I F+ N + +F Y+ M R+ +P+ +TF +L+A D++ HA
Sbjct: 74 IGHFSGGITLNRRL-SFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN----PFQFHAH 128
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+++ G +S FV N L+ Y++ D A +LFD + ++DV++WT++I+G+ ++G S
Sbjct: 129 IVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSAS-- 186
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
EA+ +F M+ G N +V L A +
Sbjct: 187 -----------------------------EAMVYFVEMKKTGVAANEMTVVSVLKAAGKV 217
Query: 234 GALDQGRWIHA-YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+ GR +H Y++ ++ D+ +G++++DMY KC C + A VFD MP+R+V +T+L
Sbjct: 218 EDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTAL 277
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYG--IEPGVQHYG------------ 337
I+G + +F M V PNE ++S + G H G
Sbjct: 278 IAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSI 337
Query: 338 --------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+DL + G LE A V + E + Y A++N HG
Sbjct: 338 EINTTAGTTLIDLYVKCGCLEEAILVFERLH-EKNVYTWTAMINGFAAHG 386
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/477 (33%), Positives = 252/477 (52%), Gaps = 31/477 (6%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
++ R F + R WN++I + + KA ++ +M+ P+ T + + A
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASA 261
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
CA S + GL HA+V++ D VL N L+ +YA C ++ AR +FD RDV+S
Sbjct: 262 CASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVS 321
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
TS+++GYAK+ + AR MF M E+N VSW+A+I GY Q +EA+ F ++
Sbjct: 322 ETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI 381
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI------ELDIILGTAIIDMYAKCGC 270
P H L ACA L L GR H ++ ++G + DI +G ++IDMY KCG
Sbjct: 382 WPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGL 441
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
+E VF+ M RD ++ ++I G A + A+E+F M + G P+
Sbjct: 442 VEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSA 501
Query: 321 --------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
+SM+ +G+ P HY C+VDLLGRAG L+ A +++ MP+EPD
Sbjct: 502 CSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAV 561
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V G+LL AC+VHG++ LGK E L+E + G +VLLSN+YA +W V +VR+ M
Sbjct: 562 VWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMR 621
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
V K PGCS I + + F+ ++ + ++I L+L + + +K + + + ++
Sbjct: 622 QMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPEADD 678
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 149/296 (50%), Gaps = 24/296 (8%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
F+ +L C + +F + HA++I+ + S F+ N L+ +Y C ++ ARK+FD
Sbjct: 22 FAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQ 81
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R+ SW +++ K G + A +F MPE++ SW+AM++G+ Q D F+EAL
Sbjct: 82 QRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVD 141
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M F N AL+ACA L L G IH + ++ LD+ +G+A++DMY+KC
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV 201
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------S 322
+ +A FD M R++ ++ SLI+ + + A+E+F+RM G+ P+E +
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASA 261
Query: 323 MSEIYGIEPGVQHYG----------------CLVDLLGRAGMLEAAKKVVREMPIE 362
+ + I G+Q + LVD+ + + A+ V MP+
Sbjct: 262 CASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 174/391 (44%), Gaps = 57/391 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ +++ H+ T F+ ++G + + G L LF C+ R WN M+
Sbjct: 70 LEDARKVFDHMQQRNT----FSWNAVLG--ALTKFGALDEALNLFKCMPERDQCSWNAMV 123
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
GFA+++ +A M DF+ N Y+F L ACA L +G+ H + + +
Sbjct: 124 SGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYS 183
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
++ + L+ +Y+ C + A++ FD R+++SW SLI Y ++G
Sbjct: 184 LDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAG--------- 234
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ALE F M CG P+ + +ACA L A+ +G
Sbjct: 235 ----------------------KALEVFVRMMNCGIEPDEITLASVASACASLSAIREGL 272
Query: 241 WIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
IHA V + D++LG A++DMYAKC + A VFD MP RDV + TS++SG A
Sbjct: 273 QIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKA 332
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK---VV 356
+A +F M +E V + L+ + G E A + ++
Sbjct: 333 SSVKAARLMFSNM----------------MERNVVSWNALIAGYTQNGENEEAVRLFLLL 376
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKET 387
+ I P +Y G LLNAC D+ LG++
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQA 407
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 7/186 (3%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + G +F + R WN MI G+A+ +A ++++ML S P++ T +L
Sbjct: 440 GLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVL 499
Query: 96 RACADTSCLFVGLICHAQ--VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNR 152
AC+ + G C+ Q I G ++ L C+D A L M +
Sbjct: 500 SACSHAGLVEEGR-CYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEP 558
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFN 209
D + W SL+ G I++ + + +++ E N+ + + N Y ++ +K+ +
Sbjct: 559 DAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRK 618
Query: 210 YMQLCG 215
M+ G
Sbjct: 619 QMRQMG 624
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/477 (31%), Positives = 258/477 (54%), Gaps = 25/477 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L RL V R W ++I G++ P A + ML P+ L
Sbjct: 183 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGAL 242
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDV 154
AC+ L G + H V + + D ++ L+ +YA C + A+ +FD + +
Sbjct: 243 SACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKP 302
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
W +I+GY K G + IAR +FD+M ++ +++++MI GY+ ++AL+ F ++
Sbjct: 303 EPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRH 362
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G R ++ +V LTACA LGAL QGR +HA +++ +E D+ L TA++DMY KCG ++ A
Sbjct: 363 GMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEA 422
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP--------------- 319
+VF M RDV ++++I+GLA + A+E F +M+ +G P
Sbjct: 423 TAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHS 482
Query: 320 ---NE------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
NE M ++ + P ++HYGC++DLL R+G+L+ A +V+ MP++P+ + +
Sbjct: 483 SLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWAS 542
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
+L+ACRVH ++DL + E L++ + + + V+V L NIY + QW +++R ME+ V
Sbjct: 543 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGV 602
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
+K G S I V G V +FV ++++ EI+ ++ I + LKS + + +A +
Sbjct: 603 KKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPATSRIAVD 659
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/435 (26%), Positives = 199/435 (45%), Gaps = 51/435 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS--ASDIGDLSHGYRLFVCLQYRTTFIWNT 58
++Q Q+ + LT SG + + ++ + S L + LF L + TTF+ +T
Sbjct: 12 VRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPTTFLHDT 71
Query: 59 MIRG----FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+R A + P+ + ++M R + +TF F+ R CA + + + HA
Sbjct: 72 ALRACLQASAGADHPV---LILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAAC 128
Query: 115 IRLGWESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+R S V N L+H+YA+ D AR+ FD +D + W ++I G + G + A
Sbjct: 129 LRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEA 188
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
R++ + PE+N VSW+++I GY + +A+ FN M G P+ ++GAL+AC+ L
Sbjct: 189 RRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKL 248
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI---------------------- 271
L+ GR +H V + I++ L +IDMYAKCG I
Sbjct: 249 KNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVI 308
Query: 272 ----------ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+ A S+FD M RDV + S+I+G + + A++LFM+++ G+ +
Sbjct: 309 IDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADN 368
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
+ + G L GRA +++V E D Y++ AL++ G V
Sbjct: 369 --FTVVSLLTACASLGALPQ--GRALHASIEQRIVEE-----DVYLVTALVDMYMKCGRV 419
Query: 382 DLGKETVESLVERSL 396
D + ER +
Sbjct: 420 DEATAVFHRMGERDV 434
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 131/327 (40%), Gaps = 58/327 (17%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
I Q Q+ G P II G+C +G + LF + R +N+MI G
Sbjct: 286 IAQAQAVFDAVGRGQKPEPWNVIIDGYCK---LGHVDIARSLFDQMGARDVITFNSMITG 342
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ A L+ Q+ R +N+T +L ACA L G HA + + E
Sbjct: 343 YIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEED 402
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+++ L+ +Y C +D A +F RDV +W+++I G A +G
Sbjct: 403 VYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNG-------------- 448
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW- 241
+ +ALE F M+ GF+P + LTAC+ L++GR
Sbjct: 449 -----------------MGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQH 491
Query: 242 ---------IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTS 291
+H ++ G +ID+ A+ G ++ A + +MP + + + S
Sbjct: 492 FNEMRSLHKLHPQIEHYG---------CMIDLLARSGLLDEAMHLVQTMPMQPNAVIWAS 542
Query: 292 LISGLANH---DQSASAIELFMRMQLE 315
++S H D + A E +++ E
Sbjct: 543 ILSACRVHKNIDLARHAAEHLLKLAPE 569
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 249/449 (55%), Gaps = 27/449 (6%)
Query: 52 TTFIWNTMIRGFAEKNE-PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
T F++N +I+ ++ + + F+LY Q+ FLPN +TF+F+ AC S +G +
Sbjct: 10 TLFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQML 69
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H I+ G+E F LL +YA ++ ARKLFD R V W +++ G A+ G +
Sbjct: 70 HTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDM 129
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTA 229
A ++F MP +N V W+ MI+GY + +AL F M Q G PN +V L A
Sbjct: 130 DGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPA 189
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFA 288
CA L AL+ G+ + AY +NG + A+++MY KCG I+ A VF+ + + R++ +
Sbjct: 190 CANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCS 249
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMS 324
+ S++ GLA H + A+EL+ +M EG P++ S +
Sbjct: 250 WNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKT 309
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ I P ++HYGC+VDLLGRAG L A +V++ M ++PD+ + GALL AC HG+V+L
Sbjct: 310 TSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVELA 369
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ ESL + G +V+LSNIYAS QW+GV K+R+ M+ +++ K G S IE
Sbjct: 370 EIAAESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGAQ 429
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+ +F+ +R++ EI LL G+ + +K
Sbjct: 430 LHKFIVKDRSHPKSNEIFALLDGVYEMVK 458
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 131/334 (39%), Gaps = 54/334 (16%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTF 91
+ GD+ LF + R W TMI G++ + KA L+ M + +PN T
Sbjct: 124 ARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTL 183
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSV 150
IL ACA+ L +G A + G+ + N +L +Y C +D A ++F ++
Sbjct: 184 VSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGS 243
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R++ SW S++ G A G+ A +++D+M +
Sbjct: 244 LRNLCSWNSMVVGLAVHGECCKALELYDQMLGE--------------------------- 276
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA----IIDMYA 266
G P+ VG L AC G + +GR I II ++D+
Sbjct: 277 ----GTSPDDVTFVGLLLACTQGGMVKKGRHI---FKSKTTSFYIIPKLEHYGCMVDLLG 329
Query: 267 KCGCIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325
+ G + A V SM + D + +L+ + H +EL + ES+
Sbjct: 330 RAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGN----VEL-------AEIAAESLFV 378
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+ PG +Y L ++ AG + K+ + M
Sbjct: 379 LEPWNPG--NYVILSNIYASAGQWDGVAKLRKVM 410
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/505 (30%), Positives = 252/505 (49%), Gaps = 58/505 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K I SH++ G D +I + GDL LF + R WN +I G+A
Sbjct: 350 KLIHSHISEDGHSSDVQIGNALISM--YARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + +A LYKQM P TF +L ACA++S G + H ++R G +S
Sbjct: 408 RREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGH 467
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N L+++Y C G + A+ +F+ ++
Sbjct: 468 LANALMNMYRRC-------------------------------GSLMEAQNVFEGTQARD 496
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+SW++MI G+ Q ++ A + F MQ P++ L+ C AL+ G+ IH
Sbjct: 497 VISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHG 556
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ +G++LD+ LG A+I+MY +CG ++ A +VF S+ +RDV ++T++I G A+ +
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616
Query: 305 AIELFMRMQLEGVVPNE-------------------------SMSEIYGIEPGVQHYGCL 339
AIELF +MQ EG P + SM YG+ P ++HYGCL
Sbjct: 617 AIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCL 676
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
V LLGRA + A+ ++ +MP PD V LL ACR+HG++ L + + ++ + +
Sbjct: 677 VGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNP 736
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
V++LLSN+YA+ +W+ V K+RR ME +RK PG S IEVD ++ EF++ +R++
Sbjct: 737 AVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETA 796
Query: 460 EIVLLLFGIDKHLKSLCFFDDGNEV 484
EI L + ++ +F D V
Sbjct: 797 EIYAELKRLSVEMEEAGYFPDTQHV 821
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 167/384 (43%), Gaps = 58/384 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ + K+I + + +G D F +I + + D +++F + R WN++
Sbjct: 43 LPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD---AHQVFKEMPRRDVISWNSL 99
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I +A++ KAF L+++M + F+PN T+ IL AC + L G H+Q+I+ G+
Sbjct: 100 ISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGY 159
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ V N LL +Y C G + ARQ+F
Sbjct: 160 QRDPRVQNSLLSMYGKC-------------------------------GDLPRARQVFAG 188
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ ++ VS++ M+ Y Q KE L F M G P+ + L A LD+G
Sbjct: 189 ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH G+ DI +GTA++ M +CG +++A F + +RDV Y +LI+ LA H
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQH 308
Query: 300 DQSASAIELFMRMQLEGVVPNESM--------SEIYGIEPG---------------VQHY 336
+ A E + RM+ +GV N + S +E G VQ
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP 360
L+ + R G L A+++ MP
Sbjct: 369 NALISMYARCGDLPKARELFYTMP 392
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 180/449 (40%), Gaps = 90/449 (20%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I S + +G DP ++ GDL ++F + R +NTM+ +A
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSM--YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+K + L+ QM P+ T+ +L A S L G H + G
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG------ 259
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+N D+ T+L+ + G + A+Q F + +++
Sbjct: 260 -------------------------LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRD 294
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V ++A+I Q EA E + M+ G N + L AC+ AL+ G+ IH+
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
++ +G D+ +G A+I MYA+CG + A +F +MP RD+ ++ ++I+G A +
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414
Query: 305 AIELFMRMQLEGVVPNE----------SMSEIYG---------IEPGVQHYGCLVDLL-- 343
A+ L+ +MQ EGV P + S Y + G++ G L + L
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474
Query: 344 ---------------------------------GRAGMLEAAKKVVREM---PIEPDNYV 367
+ G E A K+ +EM +EPDN
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSL 396
++L+ C+ ++LGK+ + E L
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGL 563
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 15/256 (5%)
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
++ + V D+ LIN Y K + A Q+F +MP ++ +SW+++I+ Y Q K+
Sbjct: 52 QMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKK 111
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
A + F MQ GF PN + LTAC L+ G+ IH+ + + G + D + +++
Sbjct: 112 AFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLS 171
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM 323
MY KCG + A VF + RDV +Y +++ A + LF +M EG+ P++
Sbjct: 172 MYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVT 231
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR---EMPIEPDNYVLGALLNACRVHGD 380
Y L+D ML+ K++ + E + D V AL+ C GD
Sbjct: 232 ------------YINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGD 279
Query: 381 VDLGKETVESLVERSL 396
VD K+ + + +R +
Sbjct: 280 VDSAKQAFKGIADRDV 295
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 217 RP---NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
RP + A V L C L + + IHA + G+ DI L +I+MY KC +
Sbjct: 21 RPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD 80
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
A VF MP RDV ++ SLIS A A +LF MQ G +PN+
Sbjct: 81 AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNK 128
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/486 (31%), Positives = 249/486 (51%), Gaps = 25/486 (5%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DP V G + LF + +R T W MI G+A+ +A L +
Sbjct: 349 DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQA 408
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
+ R+ LP+ + + AC+ L G H+ ++ G + +V N L+ +Y C
Sbjct: 409 LHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRN 468
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
M+ R++F+ +D +SW S I ++ + AR +FD M ++ VSW+ +I+ Y Q
Sbjct: 469 MEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQA 528
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+ EA+E F M +PN + L+ C LG+ G+ IH ++G++ ++I+
Sbjct: 529 ERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVA 588
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A++ MY KCGC ++ VFDSM RD+F + + I+G A H AI+++ M+ GV+
Sbjct: 589 NALMSMYFKCGCADSH-KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVL 647
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PNE SMS YG+ P ++HY C+VDLLGR G ++ A+K
Sbjct: 648 PNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEK 707
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ +MPIEPD + ALL AC++H + ++G+ E L + G +V+LSNIY+S
Sbjct: 708 FIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGM 767
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
W V ++R+ M+ V K PGCS +++ V FV+G++ + +EEI L + L+
Sbjct: 768 WVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRG 827
Query: 475 LCFFDD 480
+ D
Sbjct: 828 TGYVPD 833
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 188/411 (45%), Gaps = 45/411 (10%)
Query: 1 MKQIKQIQSHLTVSGT-LWDPFAVGKIIGFCSAS----------DIGDLSHGYRLFVCLQ 49
M + Q++ HL+ + W P V + S +G L +F +
Sbjct: 1 MARYLQLRRHLSAAAAATWAPLPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMP 60
Query: 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
+R WN+MI + A L+ + N T + +L A +G +
Sbjct: 61 HRDIIAWNSMISAYCNSGMLEDARILFDAISGG----NVRTATILLSGYAR-----LGRV 111
Query: 110 CHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
A+ + G + V N ++ Y + AR+LFD +RDV SW S++ GY S
Sbjct: 112 LDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSR 171
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP---NHAGIVG 225
Q+ A +F +MP++N V+W+ MI+GYV+++ + + F M G P N A ++
Sbjct: 172 QMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLS 231
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK-CGCIETACSVFDSMPNR 284
A+T LG L+ R V + G E D+++GT+I+++Y + ++ A FD M R
Sbjct: 232 AVTGLQDLGVLEVLR---PLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVER 288
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG 344
+ + ++++I+ L++ + +AI ++ R ++ +P+++ L+ L
Sbjct: 289 NEYTWSTMIAALSHGGRIDAAIAVYGRDPVKS-IPSQT---------------ALLTGLA 332
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
R G + A+ + ++P +P A++ +G VD KE + + R+
Sbjct: 333 RCGRITEARILFEQIP-DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRN 382
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 19/314 (6%)
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
N YT+S ++ A + + + + + S +L GL A C + AR LF
Sbjct: 289 NEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGL----ARCGRITEARILF 344
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
+ + V+SW ++I GY ++G + A+++FD+MP +N +SW+ MI GY Q +EAL+
Sbjct: 345 EQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALD 404
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
+ G P+ + + + AC+ +GAL+ GR +H+ + G + + + A+I MY
Sbjct: 405 LLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYG 464
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326
KC +E VF+ M +D ++ S I+ L ++ A +F M VV ++
Sbjct: 465 KCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISA 524
Query: 327 YG-IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y E G + +E K ++ E +P++ +L LL+ C G LG+
Sbjct: 525 YAQAERGDE-------------AVEFFKTMLHEHE-KPNSPILTILLSVCGGLGSAKLGQ 570
Query: 386 ETVESLVERSLDHE 399
+ ++ +D E
Sbjct: 571 QIHTVAIKHGMDSE 584
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/448 (36%), Positives = 243/448 (54%), Gaps = 59/448 (13%)
Query: 44 LFVCLQYRTTFIWNTMIRGF-AEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADT 101
LF + T F +N++IR A + P A A+Y++MLR+ PN++T +F L+ACA
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 188
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
G HAQ +R G + +V GLL+LY
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLY---------------------------- 220
Query: 162 NGYAKSGQISIARQMFDKMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
AK Q+++AR +FD M +KN V+WSAM++GY +V + EAL F MQ G P+
Sbjct: 221 ---AKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDE 277
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V ++ACA GALD G+W+HAY+DR GI +D+ L TA+IDMYAKCG IE A VFD+
Sbjct: 278 VTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDA 337
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M +D A++++I G A H A+ LF RM V PN
Sbjct: 338 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 397
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
S+ + GI+P +++YGC+VDLL R+G+L+ A V MP+ P++ + LL AC+
Sbjct: 398 RRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKS 457
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+D+ + + L+E + +VLLSN+YAS QW+ V +RR M+ V + G S
Sbjct: 458 SNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRS 517
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLL 465
IE++G + EFV + ++ + EI L+L
Sbjct: 518 SIEINGHLHEFVVSDDSHPEIREIRLVL 545
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 242/462 (52%), Gaps = 34/462 (7%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-----DFLPNNYTFSFILR-A 97
+F + F+ ++R P+ F ++ + R+ FLP + FS + + A
Sbjct: 94 VFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLP--FAFSTLAKSA 151
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
A S V+ G++ + FV N L+ Y C + ARK+FD V +DVISW
Sbjct: 152 TASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISW 211
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
TS++ Y +SG + A ++F + P K+ V+W+AM+ GY Q + +ALE F+ M G
Sbjct: 212 TSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMV 271
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
+ + GA++ACA LGAL + W+ +R G ++++G+ ++DMYAKCG I+ A V
Sbjct: 272 IDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKV 331
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPNE--------------- 321
F M ++V+ Y+S+I+GLA+H +++ AI LF M V PN
Sbjct: 332 FYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGM 391
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
M + YGI P HY C+VDLLGRAG+++ A +VR M + P V GALL
Sbjct: 392 VGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALL 451
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
ACR+HG ++ K E L + + G +VLLSNI AS +W V KVR M ++K
Sbjct: 452 GACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKK 511
Query: 433 VPGCSLIE-VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
P SL E DG+V +F +G+ + EI L + LK
Sbjct: 512 DPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLK 553
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 136/325 (41%), Gaps = 51/325 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ +F + W M+ G+A+ P+KA ++ +M + + + + +
Sbjct: 222 GDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAI 281
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L R G+ + V +GL+ +YA C +D A K+F ++V
Sbjct: 282 SACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVY 341
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+++S+I G A G+ S A + LFKE + N
Sbjct: 342 TYSSMIAGLASHGRASEA------------------------IALFKEMVNRAN------ 371
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETA 274
PNH +G LTAC+ G + +GR+ A + D+ GI ++D+ + G ++ A
Sbjct: 372 VEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEA 431
Query: 275 CSVFDSM---PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
+ SM P+ V + +L+ H +S ++ VV ++ +EP
Sbjct: 432 LDLVRSMSVTPHGGV--WGALLGACRIHGKS----------EIAKVVAE----HLFKLEP 475
Query: 332 -GVQHYGCLVDLLGRAGMLEAAKKV 355
+ +Y L ++L AG E KV
Sbjct: 476 ESIGNYVLLSNILASAGKWEEVSKV 500
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 263/488 (53%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+ S G ++ ++F + + WN MI G+AE +A L+K+M++++
Sbjct: 176 ITGYASK---GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T ++ ACA ++ + +G H+ + G+ S ++N L+ LY C
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC--------- 283
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F+ + K+ +SW+ +I GY ++L+KEAL
Sbjct: 284 ----------------------GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEAL 321
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIID 263
F M G PN ++ L ACA LGA++ GRWIH Y+++ G+ T++ID
Sbjct: 322 LLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLID 381
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MYAKCG IE A VFDS+ NR + ++ ++I G A H ++ +A ++F RM+ + P++
Sbjct: 382 MYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDIT 441
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM E Y I P ++HYGC++DLLG +G+ + A++++ M
Sbjct: 442 FVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM 501
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + +LL AC+++ +V+LG+ ++L++ + G +VLLSNIYA+ +WN V
Sbjct: 502 EMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVA 561
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
K+R + D ++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F
Sbjct: 562 KIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 621
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 622 DTSEVLQE 629
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/453 (31%), Positives = 230/453 (50%), Gaps = 60/453 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTM 59
++ ++ I + + +G +A+ K+I FC S D L + +F +Q IWNTM
Sbjct: 15 LQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 74
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG A ++P+ A LY M+ LPN YTF F+L++CA + G H V++LG+
Sbjct: 75 FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+ +V L+ +Y ++ ARK+FD S +RDV+S+T+LI GYA G I+ A++MFD+
Sbjct: 135 DLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDE 194
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+P K+ VSW+AMI+GY + KEALE F M RP+ + +V ++ACA +++ G
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG 254
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H+++D +G ++ + A+ID+Y KCG +ETAC +F+ + +DV ++ +LI G +
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 314
Query: 300 DQSASAIELFMRMQLEGVVPNESM-------------------------SEIYGIEPGVQ 334
+ A+ LF M G PN+ + G+
Sbjct: 315 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 374
Query: 335 HYGCLVDLLGRAGMLEAAKKV----------------------------------VREMP 360
H L+D+ + G +EAA++V +R+
Sbjct: 375 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 434
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
IEPD+ LL+AC G +DLG+ S+ E
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 467
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 211/347 (60%), Gaps = 24/347 (6%)
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+ ++S T++I YAK G I AR +FD + E++A+ W+ MI+GY Q L E L F M
Sbjct: 4 KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
RPN ++ L+AC GAL+ GRW+H+Y++ NGI +++ +GT++IDMY+KCG +
Sbjct: 64 LNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSL 123
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
E A VF+ + N+DV A+ S++ G A H S A+ LF M + G P +
Sbjct: 124 EDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNAC 183
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
SM + YGIEP V+HYGC+V+LLGRAG LE A ++V+ M I+ D +
Sbjct: 184 SHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVL 243
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
G LL ACR+HG++ LG++ E LV ++L + G +VLLSNIYA+ W GV +VR M++
Sbjct: 244 WGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKE 303
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
+ K PGCS IEV+ V EF++G+ + EI +L I+ LK+
Sbjct: 304 SGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKT 350
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 33/262 (12%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF L+ R WN MI G+A+ P + L++QML + PN T +L AC T
Sbjct: 28 LFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGA 87
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L G H+ + G V L+ +Y+ C ++ AR +F+ N+DV++W S++ G
Sbjct: 88 LETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVG 147
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
YA ++G+ Q +AL F M + G++P
Sbjct: 148 YA--------------------------MHGFSQ-----DALRLFKEMCMIGYQPTDITF 176
Query: 224 VGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+G L AC+ G + +G ++ ++ D GIE + ++++ + G +E A + +M
Sbjct: 177 IGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNME 236
Query: 283 -NRDVFAYTSLISGLANHDQSA 303
++D + +L+ H A
Sbjct: 237 IDQDPVLWGTLLGACRLHGNIA 258
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G L +F + + WN+M+ G+A A L+K+M + P + TF
Sbjct: 118 SKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFI 177
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG------------LLHLYATCNCMD 140
+L AC+ HA ++ GW+ + + + +++L ++
Sbjct: 178 GVLNACS-----------HAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLE 226
Query: 141 PARKLF-DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
A +L +M +++D + W +L+ G I++ Q+ + + +N
Sbjct: 227 EAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQN 271
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 23/127 (18%)
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
E ++ TA+I YAK G I+ A +FD + RD + +I G A H + LF +
Sbjct: 3 EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62
Query: 312 MQLEGVVPNE-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGM 348
M V PNE S E GI V+ L+D+ + G
Sbjct: 63 MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122
Query: 349 LEAAKKV 355
LE A+ V
Sbjct: 123 LEDARLV 129
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/435 (34%), Positives = 241/435 (55%), Gaps = 32/435 (7%)
Query: 87 NNYTFSFILRACAD-------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
N ++F+F+L + ++ + F+G HA ++ G +V N L H Y C +
Sbjct: 122 NLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDV 181
Query: 140 DPARKLFD-MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
R +FD + RDV++W +++ GY ++G + AR++F++MP ++ VSWS ++ GYV+
Sbjct: 182 GAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKE 241
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
AL F M G R N A +V AL+A A +G L+ GR++H V R G+ + + +G
Sbjct: 242 GELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVG 301
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A++DM++KCGC+ A VFD MP RDVFA+ ++I GLA+H A+ELF R EG+
Sbjct: 302 AALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLW 361
Query: 319 PNES------------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
P + M + Y IEP ++HYGC+VDLLGRAG++ A +
Sbjct: 362 PTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIE 421
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
++ M I PD + G +L+AC+ H VDLG L+E H+G +VLL++IYA ++
Sbjct: 422 LIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKK 481
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
W+ V +VR+ M K G SL+E G + +F+ G+ + +I +L I++ L
Sbjct: 482 WDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLAD 541
Query: 475 LCFFDDGNEVATEGG 489
+ D + V + G
Sbjct: 542 AGYVPDVSSVLHDIG 556
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 32/239 (13%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F + R W+T++ G+ ++ E A +++ M+ N L A A
Sbjct: 219 VFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGL 278
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L G H V R G V L+ +++ C C+ AR++FD RDV +W ++I G
Sbjct: 279 LEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICG 338
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
A G L ++A+E F G P
Sbjct: 339 LASHG-------------------------------LGQDAVELFWRFLDEGLWPTDITF 367
Query: 224 VGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
VG L AC+ G + +G R+ VD+ IE ++ ++D+ + G + A + + M
Sbjct: 368 VGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGM 426
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 164/448 (36%), Positives = 243/448 (54%), Gaps = 59/448 (13%)
Query: 44 LFVCLQYRTTFIWNTMIRGF-AEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADT 101
LF + T F +N++IR A + P A A+Y++MLR+ PN++T +F L+ACA
Sbjct: 82 LFDQIPDPTAFCYNSLIRALPAAGSAP--ALAVYRRMLRAGSPRPNSFTLAFALKACAAV 139
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
G HAQ +R G + +V GLL+LY
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLY---------------------------- 171
Query: 162 NGYAKSGQISIARQMFDKMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
AK Q+++AR +FD M +KN V+WSAM++GY +V + EAL F MQ G P+
Sbjct: 172 ---AKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDE 228
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V ++ACA GALD G+W+HAY+DR GI +D+ L TA+IDMYAKCG IE A VFD+
Sbjct: 229 VTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDA 288
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M +D A++++I G A H A+ LF RM V PN
Sbjct: 289 MVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDG 348
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
S+ + GI+P +++YGC+VDLL R+G+L+ A V MP+ P++ + LL AC+
Sbjct: 349 RRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKS 408
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+D+ + + L+E + +VLLSN+YAS QW+ V +RR M+ V + G S
Sbjct: 409 SNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRS 468
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLL 465
IE++G + EFV + ++ + EI L+L
Sbjct: 469 SIEINGHLHEFVVSDDSHPEIREIRLVL 496
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 165/527 (31%), Positives = 264/527 (50%), Gaps = 93/527 (17%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ + Q +H+ G D F + + ++ +S+ +F L +TF++N ++
Sbjct: 22 IPHLHQFHAHIIHKGLEQDHFIISHFLSISTS-----VSYSTSIFNRLLNPSTFLYNILL 76
Query: 61 RGFAEKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ F++ ++ I F+L+ +M +S++ L + YT+ +++ C++ L G I H IR G
Sbjct: 77 KIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGV 136
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYA-------------- 165
+V + L+ Y C + ARK+FD R+V+SWT+++ GYA
Sbjct: 137 SDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFER 196
Query: 166 -----------------KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD-------LF 201
K+G +S AR++FD+M E+N VS++ MI+GY +V LF
Sbjct: 197 MPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALF 256
Query: 202 KEALEH------------------------FNYMQLCGFRPNHAGIVGALTACAFLGALD 237
EA E F M +P+ +V ++AC+ LG D
Sbjct: 257 DEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSD 316
Query: 238 QGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+W+ +Y+ + I+ + A+IDM+AKCG +E A +F MP+RD+ SLI GL
Sbjct: 317 LAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGL 376
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
+ H + A+ELF RM EG++P+ ++M Y + P
Sbjct: 377 SIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPS 436
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
HY C+VDLL RAG L AA +++ MP++P GALL AC++HGDV+L +E L+
Sbjct: 437 PNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLL 496
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
E + G +VLLSNIYAS QW V VR M++ +RK+PGCS I
Sbjct: 497 ELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYI 543
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 256/488 (52%), Gaps = 58/488 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+++ +I +H+ ++G +P K++ FC+ S G L++ +F + T WN+MI
Sbjct: 36 MRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMI 95
Query: 61 RGFAEKNEPIK--AFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
RGF++ P++ A Y ML S P+ YTFSF+L+AC + H +IR
Sbjct: 96 RGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRF 155
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G++ +DV+ T+LI YA +G I A ++F
Sbjct: 156 GYD-------------------------------QDVVLCTNLIRSYAGNGLIETAHKVF 184
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
++MP ++ VSW++MI+ Y Q L +EAL+ ++ M++ + +V L++CA +GAL
Sbjct: 185 EEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALH 244
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G +H + + +I +G A+IDMYAKCG + +A S+F+SMP RDVF + S+I G
Sbjct: 245 MGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYG 304
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H + AI F M + GV PN MS + ++PG+
Sbjct: 305 VHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGI 364
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDL GRAG L+ A +V+R P + D + LL +C++H +V++G+ + +LV+
Sbjct: 365 KHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQ 424
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G VLLS IYA + GV ++R+ ++ ++ PG S IEV V FV ++
Sbjct: 425 LGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDK 484
Query: 454 TNVLMEEI 461
++ EI
Sbjct: 485 SHPDSREI 492
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 263/481 (54%), Gaps = 60/481 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
++ ++Q+ +H+ VSG + K+I C+A G +++ RLF + +F+++++
Sbjct: 40 LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTA---GSITYARRLFPTVPNPDSFLFDSL 96
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++ ++ I Y++ML S +NYTF+ +++ACAD S L +G H+ V+ G+
Sbjct: 97 LKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGY 156
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S DM V +LI YAK+ + +A+++FD
Sbjct: 157 GS-------------------------DMYVQ------AALIALYAKASDMKVAKKVFDA 185
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP++ ++W+++I+GY Q L +E++ F+ M GF+P+ A IV L++C+ LGALD G
Sbjct: 186 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 245
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W+H Y D NG +L+++LGT++I+MY +CG + A VFDSM R+V +T++ISG H
Sbjct: 246 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 305
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
A+ELF M+ G PN SM E YG+ PGV+H
Sbjct: 306 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEH 365
Query: 336 YGCLVDLLGRAGMLEAAKKVVRE-MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
C+VD+ GRAG+L A + +++ +P EP V ++L ACR+H + DLG + E ++
Sbjct: 366 NVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSV 425
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
++ G +V+LSNIYA + + VE VR M ++K G S IE++ F G+++
Sbjct: 426 EPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKS 485
Query: 455 N 455
+
Sbjct: 486 H 486
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 249/463 (53%), Gaps = 29/463 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ + +G WD + ++ + +G R+F + R +WN M+R +
Sbjct: 66 RKVHAAAVKTGFRWDAYTACSLMEMYTM--LGRADSARRVFDEMPQRFLVLWNMMMRCYI 123
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
A AL QM P+ T + AC+ L +G H+ + + S
Sbjct: 124 RCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFSLP- 182
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N LL +Y ++ A K+F+ R++ISWT L++GY +GQ+ AR F + +K+
Sbjct: 183 VANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKD 242
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+ W++MIN VQ F+EAL F MQL P+ +V LT CA +GALDQG WIH
Sbjct: 243 LILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQ 302
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y + +++D +LGTA+I+MY+KCG ++ + +F M +D A+T++I GLA + Q++
Sbjct: 303 YAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASK 362
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ELF MQ P+ ++M E+Y IEP ++HY CLV
Sbjct: 363 ALELFEEMQRSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLV 422
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVL-GALLNACRVHGDVDLGKETVESLVERSLD-H 398
+LLG AG+L A+K++ +MP+ D L GALL AC+ +G+V++ + + + + +
Sbjct: 423 NLLGHAGLLYEAEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKEDCSPN 482
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
V+VL+SN+YA+ +W +VR M + V+K GCS+IEV
Sbjct: 483 PDVNVLMSNVYATASRWEEAIRVRSKMTNPAVKKTAGCSMIEV 525
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 139/332 (41%), Gaps = 51/332 (15%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
N +IR A + + A+Y + ++YT+ F+LRA G HA ++
Sbjct: 15 NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVK 74
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ + L+ +Y D AR++FD R ++ W ++ Y + G+ + A +
Sbjct: 75 TGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVAL 134
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
+M A P+ +V A+TAC+ G L
Sbjct: 135 AVQMESGGAT-------------------------------PDRVTLVTAVTACSRAGDL 163
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+ GR IH+Y+D + + A++DMY K G +E A +F+ MP R++ ++T L+SG
Sbjct: 164 NLGRRIHSYMD-GVFGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGY 222
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
Q A F + + ++ SM I VQH G E A +
Sbjct: 223 GIAGQLDKARVFFYQCTQKDLILWTSM-----INACVQH-----------GSFEEALILF 266
Query: 357 REMP---IEPDNYVLGALLNACRVHGDVDLGK 385
R+M +EPD + + LL C G +D G+
Sbjct: 267 RDMQLQRVEPDKFTVVTLLTCCANIGALDQGE 298
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 173/531 (32%), Positives = 270/531 (50%), Gaps = 61/531 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDP-FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K +K I + L + ++ F + K++ S D +H ++F + ++W ++
Sbjct: 15 LKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAH--KVFDEITQPNAYLWTSL 72
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I G+ E + +AF+L+ QM R N+T S +L+A A + G +
Sbjct: 73 IHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMC 132
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA------ 173
E N ++ Y + +D ARK FD R+V+SWTS+I GY K+G ++ A
Sbjct: 133 EKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDS 192
Query: 174 --------------------------RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
R +FD+MP KN V+WS MI GY + +ALE
Sbjct: 193 MPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALEL 252
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYA 266
F + +P+ I+G ++AC+ LG +D IH YV + + D+ + T++IDMYA
Sbjct: 253 FERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYA 311
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------ 320
KCG IE A +F+ +D+ Y+++I+ LANH AI LF +MQ + P+
Sbjct: 312 KCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLG 371
Query: 321 ------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
+ M+E +GI+P +HY C+VDLLGR G LE A ++R MPI
Sbjct: 372 VLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIA 431
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
P + V GALL ACRVH +V L + L + D+ G ++LLSNIYA+ +W V KVR
Sbjct: 432 PHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVR 491
Query: 423 RGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+ ++ VRK G S IE+ VV EFV G+ ++ + I L+L+ + + +K
Sbjct: 492 AKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMK 542
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/543 (29%), Positives = 268/543 (49%), Gaps = 102/543 (18%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++K++ + + + D + +++ FC+ SD G+L++ +F + + +IWN+MI
Sbjct: 18 MAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G++ P +A +Y++M + + P+++TF F+L+AC+ + +G H +++ G+E
Sbjct: 78 KGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFE 137
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING----------------- 163
+ LL +YA C M+ A K+FD +V++WTSLI G
Sbjct: 138 VDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDM 197
Query: 164 ------------------YAKSGQISIARQMFDKMPEK-----------NAVSWSAMING 194
A+S ++ R + D+ + N + +A+++
Sbjct: 198 ELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDM 257
Query: 195 YVQVDLFKEALEHFNYM-------------------------------QLCGFRPNHAGI 223
Y + K A + FN M ++ GF P+ A
Sbjct: 258 YAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATF 317
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
+ + ACA LGAL G+ +HAYV + + D +GTA++DMYAK G E A VF +
Sbjct: 318 LCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQK 377
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLE-GVVPNE--------------------- 321
+DV A+TSLI GLA H A+ F +MQ + ++P+E
Sbjct: 378 KDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKN 437
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM ++GIEP QHYGC+VDLL RAG L A+++V +MP+EP+ + ALLN C+++
Sbjct: 438 HFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIY 497
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
++D+ + E +D GV+VLLSNIYA +W V+ R M++ +++K G S
Sbjct: 498 QNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSS 557
Query: 439 IEV 441
+E+
Sbjct: 558 VEM 560
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 6/201 (2%)
Query: 127 NGLLHLYATCNCMDPARKLFDM----SVNRDVISWTSLIN--GYAKSGQISIARQMFDKM 180
N +L L C M ++L + SV +DVI + L++ Y+ SG ++ A+ +F+++
Sbjct: 6 NSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQI 65
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ W++MI GY + EAL + M+ G+ P+H L AC+ + + G+
Sbjct: 66 DRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQ 125
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H + + G E+D+ TA++ MYA CG +E A VFD +P +V A+TSLI+G ++D
Sbjct: 126 CVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISND 185
Query: 301 QSASAIELFMRMQLEGVVPNE 321
+ A+ ++ M+L V PNE
Sbjct: 186 CPSEAVRVYKDMELWSVAPNE 206
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 150/428 (35%), Positives = 241/428 (56%), Gaps = 26/428 (6%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
ML PN TF+F+ ACA L G + H I+ G++ + L L+ +YA
Sbjct: 1 MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+ AR++FD RD+ +W SLI GY++SG + A ++F MP ++ VSW+ MI+GY Q
Sbjct: 61 LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQN 120
Query: 199 DLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
++ +ALE F M+ RPN I +ACA LGAL+ G I +Y NG+ ++ +
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYV 180
Query: 258 GTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
+++MYA+CG I+ A VF+ + R++ ++ S++ GLA H +S A++L+ +M EG
Sbjct: 181 SNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEG 240
Query: 317 VVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
+ P+ +SM + I P ++HYGC+VDLLGRAG L+ A
Sbjct: 241 IEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEA 300
Query: 353 KKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412
+V+ MP++PD+ + G LL AC H +V+ + ESL + + G +V+L NIYAS
Sbjct: 301 YDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASA 360
Query: 413 EQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
++W+GV K+R+ M+ ++ K G S+IE +G + +F+ ++++ EI LL I +
Sbjct: 361 QRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSHPRHYEIYALLNEISTKM 420
Query: 473 KSLCFFDD 480
K DD
Sbjct: 421 KLQITEDD 428
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 223/408 (54%), Gaps = 26/408 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
W TMI G+ +K +A +Y+ ML++ PN ++ AC + + G H V+
Sbjct: 285 WGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVV 344
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G++ Y+F+ +++ YA C MD A F++ V + SW +L G+ K+G + A +
Sbjct: 345 KRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALK 404
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
FDKM ++ SWS MI+GY Q + K ALE F+ M G +PN +V +A A LG
Sbjct: 405 TFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGT 464
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--DVFAYTSLI 293
L +G+ H Y+ I + L A+IDMYAKCG I +A F+ + + V + ++I
Sbjct: 465 LQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAII 524
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGI 329
GLA+H ++ +E+F MQ + PN ++M Y +
Sbjct: 525 CGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYNV 584
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EP ++HYGC++D+LGRAG+LE A++++R MP+E D + G LL ACR HG+V++G+ E
Sbjct: 585 EPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGERAAE 644
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+L + H G VLLSNIYA+ +W V VR M+ + + PG S
Sbjct: 645 NLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 31/317 (9%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +LF + + + TMI GF + +A ++K M +PN+ T ++
Sbjct: 133 GQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVI 192
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ + + H V+++ V L+H Y C+ + AR+LFD R+++
Sbjct: 193 SACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLV 252
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++NGYAK+G + AR++FD + +K+ +SW MI+GY+Q +EALE + M G
Sbjct: 253 TWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTG 312
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN IV ++AC A+ G +H V + G + + T II YA CG ++ AC
Sbjct: 313 HGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLAC 372
Query: 276 -------------------------------SVFDSMPNRDVFAYTSLISGLANHDQSAS 304
FD M RDVF+++++ISG A +
Sbjct: 373 LQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKM 432
Query: 305 AIELFMRMQLEGVVPNE 321
A+ELF +M G+ PNE
Sbjct: 433 ALELFHKMLAGGIKPNE 449
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 156/306 (50%), Gaps = 19/306 (6%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L++C+ S + G H+ + +LG F+ N L+++YA C + A+ LFD D
Sbjct: 60 LKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDS 119
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+S +++GY ++GQI AR++FD MP K VS++ MI G+VQ F+EALE F M+ C
Sbjct: 120 VSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSC 179
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G PN +V ++AC+ LG + R +H V + + +I+ T ++ Y C + A
Sbjct: 180 GVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREA 239
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
+FD MP R++ + +++G A A ELF +G+ + +S
Sbjct: 240 RRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELF-----DGICDKDVIS---------- 284
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHGDVDLGKETVESL 391
+G ++D + G L A ++ R M P+ ++ L++AC + G + ++
Sbjct: 285 -WGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTV 343
Query: 392 VERSLD 397
V+R D
Sbjct: 344 VKRGFD 349
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 27/239 (11%)
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
+ +F A H N+ + +V AL +C+ L + QGR IH+ + + G+ + +
Sbjct: 37 IHIFTNARNHQNH------HDSELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFI 90
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
++I+MYAKCG I+ A +FD D + ++SG + Q +A +LF V
Sbjct: 91 QNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLF------DV 144
Query: 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNA 374
+PN+ G Y ++ + G A +V ++M + P++ L +++A
Sbjct: 145 MPNK----------GCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISA 194
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
C G+V L V LV + G+ ++ +N+ + +GV + RR ++ R +
Sbjct: 195 CSHLGEV-LNCRMVHGLVVKMFV-VGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNL 251
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 259/477 (54%), Gaps = 25/477 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L RL V R W ++I G++ P A + ML P+ L
Sbjct: 185 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGAL 244
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDV 154
AC+ L +G + H V + D ++ L+ +YA C + A+ +FD + +
Sbjct: 245 SACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKP 304
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
W ++I+GY K G + +AR +FD+M ++ +++++MI GY+ ++AL+ F M+
Sbjct: 305 EPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRH 364
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G R ++ +V LTACA LGAL GR +HA +++ +E D+ LGTA++DMY KCG ++ A
Sbjct: 365 GMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEA 424
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
+VF M RDV +T++I+GLA + A+E F +M+ +G P
Sbjct: 425 TAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M ++ + P V+HYGC++DLL R+G+L+ A +V+ MP++P+ + G+
Sbjct: 485 SLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGS 544
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
+L+ACRVH ++DL + E L++ + + + V+V L NIY + QW ++VR ME+ V
Sbjct: 545 ILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGV 604
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
+K G S I V G V +FV+ ++++ EI+ ++ I LKS+ + + +A +
Sbjct: 605 KKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVD 661
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 198/437 (45%), Gaps = 53/437 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS--ASDIGDLSHGYRLFVCLQYRTTFIWNT 58
++Q Q+ + LT SG + + ++ + S L + LF L + TTF+++T
Sbjct: 12 VRQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFDT 71
Query: 59 MIRG----FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLF--VGLICHA 112
+R A + P+ L ++M +TF F+ R CA + + L+ HA
Sbjct: 72 ALRACLQASAGADHPV---LLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHA 128
Query: 113 QVIRLGWESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
+R S V N L+H+YA+ D AR+ FD +D + W ++I G + G +
Sbjct: 129 ACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLD 188
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
AR++ + PE+N VSW+++I GY + +A+ FN M G P+ ++GAL+AC+
Sbjct: 189 EARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACS 248
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI-------------------- 271
L LD GR +H V + I + L A+IDMYAKCG I
Sbjct: 249 KLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWN 308
Query: 272 ------------ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
+ A S+FD M RDV + S+I+G + + A++LFM+M+ G+
Sbjct: 309 AIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRA 368
Query: 320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+ + + G L GRA +++V E D Y+ ALL+ G
Sbjct: 369 DN--FTVVSLLTACASLGALPH--GRALHASIEQRIVEE-----DVYLGTALLDMYMKCG 419
Query: 380 DVDLGKETVESLVERSL 396
VD + ER +
Sbjct: 420 RVDEATAVFHRMGERDV 436
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 131/327 (40%), Gaps = 58/327 (17%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
I Q Q+ G P II G+C +G + LF + R +N+MI G
Sbjct: 288 IAQAQAVFDAVGRGQKPEPWNAIIDGYCK---LGHVDVARSLFDQMGARDVITFNSMITG 344
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ A L+ QM R +N+T +L ACA L G HA + + E
Sbjct: 345 YIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEED 404
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
++ LL +Y C +D A +F RDV +WT++I G A +G
Sbjct: 405 VYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNG-------------- 450
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW- 241
+ K+ALE F M+ GF+P + LTAC+ LD+GR
Sbjct: 451 -----------------MGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLH 493
Query: 242 ---------IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTS 291
+H V+ G +ID+ A+ G ++ A + +MP + + + S
Sbjct: 494 FNEMRSLHKLHPQVEHYG---------CMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGS 544
Query: 292 LISGLANH---DQSASAIELFMRMQLE 315
++S H D + A E +++ E
Sbjct: 545 ILSACRVHKNIDLARHAAEHLLKLAPE 571
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 254/487 (52%), Gaps = 61/487 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+ +F + R +N MIR + + A +++ M+ F P++YT+ +L
Sbjct: 81 GEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVL 140
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC+ + L +GL H V ++G + FV NGL+ LY C C+ AR + D ++DV+
Sbjct: 141 KACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVV 200
Query: 156 SWTSLINGYAKSGQISIA-------------------------------------RQMFD 178
SW S++ GYA++ Q A +MF
Sbjct: 201 SWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFM 260
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+ +K+ VSW+ MI+ Y++ + ++++ + M C P+ L AC L AL
Sbjct: 261 NLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLL 320
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GR IH YV+R + +++L ++IDMYA+CGC+E A VFD M RDV ++TSLIS
Sbjct: 321 GRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGM 380
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
Q +A+ LF MQ G P+ + M++ Y I P ++
Sbjct: 381 TGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIE 440
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
H+ CLVDLLGR+G ++ A ++++MP++P+ V GALL++CRV+ ++D+G + L++
Sbjct: 441 HFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQL 500
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ + G +VLLSNIYA +W V +R M+ +RK+PG S +E++ V F++G+
Sbjct: 501 APEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTY 560
Query: 455 NVLMEEI 461
+ +EI
Sbjct: 561 HPQSKEI 567
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 34/287 (11%)
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K+F++S + + L+ YA G+ +AR +FD +PE+N + ++ MI Y+ L+ +
Sbjct: 57 KVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDD 116
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
AL F M GF P+H L AC+ L G +H V + G++L++ +G +I
Sbjct: 117 ALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIA 176
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM----------- 312
+Y KCGC+ A V D M ++DV ++ S+++G A + Q A+++ M
Sbjct: 177 LYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACT 236
Query: 313 --QLEGVVPNESMSEIYGIE--------PGVQHYGCLVDLLGRAGMLEAAKKVVREM--- 359
L V N S + +E + + ++ + + M + + +M
Sbjct: 237 MASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKC 296
Query: 360 PIEPDNYVLGALLNAC----------RVHGDVDLGKETVESLVERSL 396
+EPD ++L AC R+H V+ K L+E SL
Sbjct: 297 EVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSL 343
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 263/481 (54%), Gaps = 60/481 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
++ ++Q+ +H+ VSG + K+I C+A G +++ RLF + +F+++++
Sbjct: 104 LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTA---GSITYARRLFPTVPNPDSFLFDSL 160
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++ ++ I Y++ML S +NYTF+ +++ACAD S L +G H+ V+ G+
Sbjct: 161 LKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGY 220
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S DM V +LI YAK+ + +A+++FD
Sbjct: 221 GS-------------------------DMYVQ------AALIALYAKASDMKVAKKVFDA 249
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP++ ++W+++I+GY Q L +E++ F+ M GF+P+ A IV L++C+ LGALD G
Sbjct: 250 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFG 309
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W+H Y D NG +L+++LGT++I+MY +CG + A VFDSM R+V +T++ISG H
Sbjct: 310 CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMH 369
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
A+ELF M+ G PN SM E YG+ PGV+H
Sbjct: 370 GYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEH 429
Query: 336 YGCLVDLLGRAGMLEAAKKVVRE-MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
C+VD+ GRAG+L A + +++ +P EP V ++L ACR+H + DLG + E ++
Sbjct: 430 NVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSV 489
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
++ G +V+LSNIYA + + VE VR M ++K G S IE++ F G+++
Sbjct: 490 EPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKS 549
Query: 455 N 455
+
Sbjct: 550 H 550
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 232/400 (58%), Gaps = 25/400 (6%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M RS +P+ + +L CA T L G H+ ++ V L+++YA+C
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
M+ A KL++ ++++ T+++ GYAK+G++ IA +F+ MP K+ VSWSAMI GY +
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
EAL F+ MQ G +P+ ++ ++ACA +GAL++ R IH++V+ + + + +G
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A+IDM++KCG + A VF++MP ++V +TS+I+ A H SA+ LF M+ EG+
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 240
Query: 319 PN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
PN + M + Y IEP +HYGC+VDLLGRA +L A
Sbjct: 241 PNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAAD 300
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+++ M + P+ + G+LL ACR+HGD++LG + ++E +H G VLLSNIYA
Sbjct: 301 LIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGN 360
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF-VSGER 453
WN V++VR ME K GCS +E++G V +F V GE+
Sbjct: 361 WNDVKEVRGVMEVQGTWKKKGCSWMELNGSVHQFAVGGEK 400
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 33/266 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +F + + W+ MI G+AE ++P++A L+ M RS P+ T ++
Sbjct: 90 GKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVI 149
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L H+ V + N L+ +++ C + A +F+ ++V+
Sbjct: 150 SACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVV 209
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+WTS+I A G A +F+ M + G
Sbjct: 210 TWTSIITASAMHGDGRSALTLFENMKSE-------------------------------G 238
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+PN +G L AC G +++GR + V + IE ++D+ + + A
Sbjct: 239 IQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQA 298
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANH 299
+ SM R +V + SL++ H
Sbjct: 299 ADLIQSMHLRPNVVIWGSLLAACRMH 324
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/474 (32%), Positives = 264/474 (55%), Gaps = 36/474 (7%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+ Q+ + LT G + +P A+ +++ + S S ++++ +F + TF +N MIRG
Sbjct: 40 EFAQLHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRG 99
Query: 63 FAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+A++ +P A +L+ ML ++ N TF F+L+AC+ + G H V + G
Sbjct: 100 YAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSE 159
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV N L+ +Y++C + A ++F+ + DV+SW S+I+G G + +QMFD+M
Sbjct: 160 DLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMS 219
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+++ V+W+ +I+GYV+ L EA E F+ M+ +V LTAC++LGAL+QG W
Sbjct: 220 KRSLVTWNCLIDGYVKAGLLMEARELFDQMRFT--------MVSVLTACSYLGALEQGEW 271
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+ A++++NGI+++ +LGTA+++M+AKCG IE A SVF S+ RDV A+ S+I LA H
Sbjct: 272 MQAHIEKNGIDVNSVLGTALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHGH 331
Query: 302 SASAIELFMRM-----QLEGVV-------------------PNESMSEIYGIEPGVQHYG 337
A +F M L+G++ + MSE YG+ P V+HYG
Sbjct: 332 GQEAFAIFSDMLRSNTLLDGIIFLGLLSVCRHLGLVDEGKRFFQLMSEEYGLVPKVEHYG 391
Query: 338 CLVDLLGRAGMLEAAKKVV---REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
C+VDLL A +LE A+ ++ ++ + GALL ++ +G+ + L++
Sbjct: 392 CMVDLLCHADLLEEARDLIDSSHASQMKSSVPMWGALLGVSCQLKNIVMGEYAAKHLLQL 451
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ +LSN+Y++ + +VR M+ + K+PG S +E+DG+V +F
Sbjct: 452 DPFDGNCYTVLSNLYSAAGLYEKAIEVRNEMKKQGLEKIPGSSSMEIDGLVLDF 505
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 256/488 (52%), Gaps = 58/488 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+++ +I +H+ ++G +P K++ FC+ S G L++ +F + T WN+MI
Sbjct: 18 MRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMI 77
Query: 61 RGFAEKNEPIK--AFALYKQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
RGF++ P++ A Y ML S P+ YTFSF+L+AC + H +IR
Sbjct: 78 RGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRF 137
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G++ +DV+ T+LI YA +G I A ++F
Sbjct: 138 GYD-------------------------------QDVVLCTNLIRSYAGNGLIETAHKVF 166
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
++MP ++ VSW++MI+ Y Q L +EAL+ ++ M++ + +V L++CA +GAL
Sbjct: 167 EEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALH 226
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G +H + + +I +G A+IDMYAKCG + +A S+F+SMP RDVF + S+I G
Sbjct: 227 MGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYG 286
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H + AI F M + GV PN MS + ++PG+
Sbjct: 287 VHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGI 346
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC+VDL GRAG L+ A +V+R P + D + LL +C++H +V++G+ + +LV+
Sbjct: 347 KHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQ 406
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G VLLS IYA + GV ++R+ ++ ++ PG S IEV V FV ++
Sbjct: 407 LGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDK 466
Query: 454 TNVLMEEI 461
++ EI
Sbjct: 467 SHPDSREI 474
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 242/473 (51%), Gaps = 55/473 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +LF L +T W MI G N + L+ +M + PN T ++
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C T L +G HA ++R G+ S L
Sbjct: 306 VECGFTGALQLGKQLHAYILRNGF-SVSLALA---------------------------- 336
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+L++ Y K I AR +FD ++ + W+AM++ Y Q + +A F+ M+ G
Sbjct: 337 --TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
RP IV L+ CA GALD G+W+H+Y+D+ +E+D IL TA++DMYAKCG I A
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 454
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
+F +RD+ + ++I+G A H A+++F M+ +GV PN
Sbjct: 455 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 514
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
E M +G+ P ++HYGC+VDLLGRAG+L+ A ++++ MPI+P+ V GAL
Sbjct: 515 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 574
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
+ ACR+H + LG+ L+E ++ G +VL+SNIYA+ +W+ VR+ M+ ++
Sbjct: 575 VAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMK 634
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
K PG S+IEV+G V EF+ G++++ + I +L + + L + D + V
Sbjct: 635 KEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTV 687
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 29/278 (10%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F + R W+TMIR + E A L ++M P+ ++ ADT+
Sbjct: 151 VFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTAN 210
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
+ +G HA VIR + V + T+L++
Sbjct: 211 MRMGKAMHAYVIRNSNNEH-----------------------------MGVPTTTALLDM 241
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
YAK G + +ARQ+F+ + +K VSW+AMI G ++ + +E + F MQ PN +
Sbjct: 242 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITM 301
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
+ + C F GAL G+ +HAY+ RNG + + L TA++DMY KC I A ++FDS N
Sbjct: 302 LSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQN 361
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
RDV +T+++S A + A LF +M+ GV P +
Sbjct: 362 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 399
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 33/236 (13%)
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
N+ +L+AC S +G H V++ G + FV N L+ +Y C C++ AR +FD
Sbjct: 94 NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+ RDV+SW+++I +++ + +A ++ +M
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREM--------------------------- 186
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG--IELDIILGTAIIDMY 265
N+MQ+ RP+ +V + A + G+ +HAYV RN + + TA++DMY
Sbjct: 187 -NFMQV---RPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMY 242
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
AKCG + A +F+ + + V ++T++I+G ++ +LF+RMQ E + PNE
Sbjct: 243 AKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNE 298
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 242/442 (54%), Gaps = 35/442 (7%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADTSCLFVGLIC 110
T + + I + + A AL +ML S LP +T S L AC L VG
Sbjct: 92 TAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGG---LAVGRAL 148
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQ 169
H ++L +V LL +YA AR LFD M + V+S T+++ YAK G
Sbjct: 149 HGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGL 208
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ AR +FD +P K+ + W+AM++GY Q EAL F M G P+ +V AL+A
Sbjct: 209 LDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSA 268
Query: 230 CAFLGALDQGRWIHAYVDRNG---IELDIILGTAIIDMYAKCGCIETACSVFDSMP--NR 284
A LG + GRW+H++V + + L+ +GTA+IDMY KCG +E A +VF + +R
Sbjct: 269 VAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDR 328
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------------------- 321
D+ A+ ++++G A H S A+ F +++ +G+ P +
Sbjct: 329 DIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELF 388
Query: 322 -SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP-IEPDNYVLGALLNACRVHG 379
SM+E YGIEP V+HYGC+VDLLGRAG +E A ++V+ M +PD + +LL ACR+H
Sbjct: 389 RSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHK 448
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+++LG+ + LV L + G +VLLSN+YA+ W V +VR M + ++K PGCS +
Sbjct: 449 NMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAV 508
Query: 440 EVDGVVCEFVSGERTNVLMEEI 461
EV V EFV+G+R++ EI
Sbjct: 509 EVGRRVVEFVAGDRSHPRAAEI 530
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/413 (22%), Positives = 157/413 (38%), Gaps = 67/413 (16%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DP V + +G L LF L + WN M+ G+ + P +A L+++
Sbjct: 190 DPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRR 249
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF---VLNGLLHLYAT 135
MLRS P+ + L A A G H+ V V L+ +Y
Sbjct: 250 MLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYK 309
Query: 136 CNCMDPARKLF-DMSV-NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
C ++ A +F D+ +RD+++W +++NGYA G
Sbjct: 310 CGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGH------------------------ 345
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIE 252
+EAL F ++ G P +G L AC+ G +D+GR + + + GIE
Sbjct: 346 -------SREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIE 398
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFM 310
+ ++D+ + G +E A + SM D + SL++ H +EL
Sbjct: 399 PKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKN----MELGQ 454
Query: 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
R+ V + S Y + + +GR + A + +E
Sbjct: 455 RIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKE------------ 502
Query: 371 LLNACRVHGDVDLGKETVESLV-ERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422
C V++G+ VE + +RS H + IYA E+ NG+ + R
Sbjct: 503 --PGCSA---VEVGRRVVEFVAGDRS------HPRAAEIYAKLEEVNGMARAR 544
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 67/244 (27%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HA +R G V++D L YA SG++
Sbjct: 50 HAAAVRAG-------------------------------VDQDKAVDFRLQRAYAASGRL 78
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNHAGIVGALTA 229
+A + + P+ AV +++ I+ + L AL + M L G P + +L A
Sbjct: 79 DLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPA 138
Query: 230 CAFLGALDQGRWIHAYVDR------------------------------NGIELD--IIL 257
C G L GR +H Y + +G++ D ++
Sbjct: 139 C---GGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVS 195
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
TA++ YAK G ++ A S+FD +P++D+ + +++ G H + + A+ LF RM GV
Sbjct: 196 VTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGV 255
Query: 318 VPNE 321
P+E
Sbjct: 256 EPDE 259
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 164/515 (31%), Positives = 272/515 (52%), Gaps = 67/515 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+KQ++Q+ +HL V+G + K+I CSA I ++ + LF+ + F++N++
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAI---AYTHLLFLSVPLPDDFLFNSV 78
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG--LICHAQVIRL 117
I+ ++ P+ A Y++ML S+ P+NYTF+ ++++CAD S L +G + CHA V
Sbjct: 79 IKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGF 138
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G ++Y +L+ Y+K G + ARQ+F
Sbjct: 139 GLDTY---------------------------------VQAALVTFYSKCGDMEGARQVF 165
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MPEK+ V+W+++++G+ Q L EA++ F M+ GF P+ A V L+ACA GA+
Sbjct: 166 DRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVS 225
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G W+H Y+ G++L++ LGTA+I++Y++CG + A VFD M +V A+T++IS
Sbjct: 226 LGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYG 285
Query: 298 NHDQSASAIELFMRMQLE-GVVPN------------------------ESMSEIYGIEPG 332
H A+ELF +M+ + G +PN + M++ Y + PG
Sbjct: 286 THGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPG 345
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG---ALLNACRVHGDVDLGKETVE 389
V+H+ C+VD+LGRAG L+ A K + ++ A+L AC++H + DLG E +
Sbjct: 346 VEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAK 405
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L+ D+ G HV+LSNIYA + + + V +R GM N +RK G S+IEV+ F
Sbjct: 406 RLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFS 465
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
G+ ++ EI L + K + + EV
Sbjct: 466 MGDESHQETGEIYRYLETLISRCKEIGYAPVSEEV 500
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 163/500 (32%), Positives = 267/500 (53%), Gaps = 33/500 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M IKQ+ +H +G + +++ I +L + +LF Q TF++N +I
Sbjct: 1 MNGIKQLHAHCLRTGVDETKDLLQRLLL------IPNLVYARKLFDHHQNSCTFLYNKLI 54
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + ++P ++ LY + P+++TF+FI A A S + H+Q R G+E
Sbjct: 55 QAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFE 114
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S F L+ YA + AR++FD RDV W ++I GY + G + A ++FD M
Sbjct: 115 SDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSM 174
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQG 239
P KN SW+ +I+G+ Q + EAL+ F M+ +PNH +V L ACA LG L+ G
Sbjct: 175 PRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIG 234
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLAN 298
R + Y NG +I + A I+MY+KCG I+ A +F+ + N R++ ++ S+I LA
Sbjct: 235 RRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLAT 294
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H + A+ LF +M EG P+ +SM E++ I P ++
Sbjct: 295 HGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLE 354
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC++DLLGR G L+ A +++ MP++PD V G LL AC HG+V++ + E+L +
Sbjct: 355 HYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKL 414
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS-LIEVDGVVCEFVSGER 453
+ G V++SNIYA+ E+W+GV ++R+ M+ + K G S +EV V +F ++
Sbjct: 415 EPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDK 474
Query: 454 TNVLMEEIVLLLFGIDKHLK 473
++ EI +L I + +K
Sbjct: 475 SHPRSYEIYQVLEEIFRRMK 494
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 155/499 (31%), Positives = 252/499 (50%), Gaps = 63/499 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ ++ I + + G D F +I + ++ ++F + R T WN+MI
Sbjct: 131 VRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMI 190
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G + E +A L+ +M D +
Sbjct: 191 GGLVKVGELGEARRLFDEMPERDTV----------------------------------- 215
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S++ +L+G Y M+ A +LF+ R+V+SW++++ GY+K+G + +AR +FDKM
Sbjct: 216 SWNTILDG----YVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKM 271
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P KN V W+ MI+GY + L K+A+ +N M+ G + + ++ L+ACA G L G+
Sbjct: 272 PVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGK 331
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+HA ++R + + A+IDMYAKCG +E A S+F M +DV ++ ++I GLA H
Sbjct: 332 RVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHG 391
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
A++LF RM+ EG VP++ +M YG+ P V+HY
Sbjct: 392 HGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHY 451
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGR G L+ A ++V MP+EP+ + G LL ACR+H L +E + LV+ L
Sbjct: 452 GCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSEL 511
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
G +LSNIYA+ W+ +R M+ ++K G S IEVD V EF +R++
Sbjct: 512 SDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHP 571
Query: 457 LMEEIVLLLFGIDKHLKSL 475
+ I + G+ +H+ L
Sbjct: 572 KSDRIYKTIDGLGQHINKL 590
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 188/404 (46%), Gaps = 67/404 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQI + + + + F K+I S ++ +F +Q ++NT+I
Sbjct: 30 LNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCR--QMTLAVNVFNQIQDPDVLLYNTLI 87
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +EP+ AF+++ +M S +N+T+ F+L+AC+ + V + HAQV ++G+
Sbjct: 88 RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFC 147
Query: 121 SYDFVLNGLLHLYATC--NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
FV N L+ Y C + + ARK+F++ RD +SW S+I G K G++ AR++FD
Sbjct: 148 LDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFD 207
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MPE++ VSW+ +++GYV+ A E F M
Sbjct: 208 EMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPA------------------------- 242
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
RN ++ + ++ Y+K G ++ A +FD MP +++ +T +ISG A
Sbjct: 243 ---------RN-----VVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAE 288
Query: 299 HDQSASAIELFMRMQLEGVVPNE----------SMSEIYGIEPGVQ------HYGC---- 338
+ AI L+ +M+ G+ ++ ++S + G+ V + C
Sbjct: 289 KGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPV 348
Query: 339 ---LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+D+ + G LE A + M + D A++ +HG
Sbjct: 349 SNALIDMYAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHG 391
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 83/336 (24%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HAQV++ FV L+ ++ C M A +F+ + DV+ + +LI + ++ +
Sbjct: 37 HAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEP 96
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
+A +F +M + + ++F Y L L AC
Sbjct: 97 LLAFSVFFEMQDSGVCA------------------DNFTYPFL-------------LKAC 125
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS-------------- 276
+ + IHA V++ G LDI + ++ID Y KCG A +
Sbjct: 126 SGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVS 185
Query: 277 -------------------VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+FD MP RD ++ +++ G + +A ELF +M V
Sbjct: 186 WNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNV 245
Query: 318 VPNESMSEIYGIEPGVQHYGCLVDLL---------------GRAGMLEAAKKVVREMP-- 360
V +M Y + L D + G+ + A + +M
Sbjct: 246 VSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEA 305
Query: 361 -IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
++ D+ + ++L+AC V G + LGK V + +ER+
Sbjct: 306 GLKFDDGTVISILSACAVSGLLGLGKR-VHASIERT 340
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+L+Q + IHA V + + + +G +I ++ C + A +VF+ + + DV Y +LI
Sbjct: 29 SLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIR 88
Query: 295 GLANHDQSASAIELFMRMQLEGV 317
+ + A +F MQ GV
Sbjct: 89 AHVRNSEPLLAFSVFFEMQDSGV 111
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 251/455 (55%), Gaps = 34/455 (7%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F + R WNTMI G+A+ E ++A L+++ D +T++ ++
Sbjct: 226 IFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQN-- 279
Query: 104 LFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
G++ A+ + G + V N ++ Y C MD AR+LF+ ++V SW ++I
Sbjct: 280 ---GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMIT 336
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
GYA++G I+ AR FD+MP+++++SW+A+I GY Q +EAL F M+ G R N +
Sbjct: 337 GYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRST 396
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
L+ CA + AL+ G+ +H V + G+E +G A++ MY KCG I+ A VF+ +
Sbjct: 397 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 456
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
++V ++ ++I+G A H A+ LF M+ G++P++
Sbjct: 457 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 516
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM++ YGI +HY C++DLLGRAG L+ A+ +++ MP EPD GALL A R+H
Sbjct: 517 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIH 576
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
G+ +LG++ + + E D+ G++VLLSN+YA++ +W V ++R M D V+KVPG S
Sbjct: 577 GNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSW 636
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+EV + F G+ + + I L +D +K
Sbjct: 637 VEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMK 671
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 34/310 (10%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + R WN M+ G+A+ +A ++ +M N+ +++ +L A
Sbjct: 133 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAAYVQN-- 186
Query: 104 LFVGLICHAQVI---RLGWE--SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWT 158
G I A+ + + WE S++ ++ G Y N + AR +FD RD +SW
Sbjct: 187 ---GRIEDARRLFESKADWELISWNCMMGG----YVKRNRLVDARGIFDRMPERDEVSWN 239
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
++I+GYA++G++ A+++F++ P ++ +W+AM++GYVQ + EA F+ M
Sbjct: 240 TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS 299
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
+A I+ C +DQ R + + ++ +I YA+ G I A + F
Sbjct: 300 WNA-IIAGYVQCK---RMDQARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFF 351
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------SEIYGIE 330
D MP RD ++ ++I+G A A+ LF+ M+ +G N S +EI +E
Sbjct: 352 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 411
Query: 331 PGVQHYGCLV 340
G Q +G +V
Sbjct: 412 LGKQVHGRVV 421
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/384 (23%), Positives = 156/384 (40%), Gaps = 76/384 (19%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G RLF + R++ WN MI G ++ A L+++M D +
Sbjct: 63 GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLV---------- 112
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
S++ +++G + + AR LFD RDV+
Sbjct: 113 -------------------------SWNVMISGCVRY----RNLRAARLLFDQMPERDVV 143
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW ++++GYA++G + A+++FD+MP KN++SW+ M+ YVQ ++A F
Sbjct: 144 SWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFE------ 197
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI-----ELDIILGTAIIDMYAKCGC 270
+ A C G + + R VD GI E D + +I YA+ G
Sbjct: 198 ---SKADWELISWNCMMGGYVKRNR----LVDARGIFDRMPERDEVSWNTMISGYAQNGE 250
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ----------LEGVVPN 320
+ A +F+ P RDVF +T+++SG + A +F M + G V
Sbjct: 251 LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQC 310
Query: 321 ESMS---EIYGIEP--GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
+ M E++ P V + ++ + G + A+ MP + D+ A++
Sbjct: 311 KRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP-QRDSISWAAIIAGY 369
Query: 376 RVHGDVDLGKETVESLVERSLDHE 399
G G+E + VE D E
Sbjct: 370 AQSG---YGEEALHLFVEMKRDGE 390
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
++ + D++ W I + ++GQ A ++F+ MP ++++SW+AMI+G + D F A +
Sbjct: 43 LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F M + I G C L R + + E D++ A++ YA+
Sbjct: 103 FEKMPTRDLVSWNVMISG----CVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQ 154
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM----------QLEGV 317
G ++ A +FD MP ++ ++ +++ + + A LF + G
Sbjct: 155 NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGY 214
Query: 318 VPNESMSEIYGI-----EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
V + + GI E + ++ + G L A+++ E P+ D + A++
Sbjct: 215 VKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR-DVFTWTAMV 273
Query: 373 NACRVHGDVDLGKETVESLVERS 395
+ +G +D + + + E++
Sbjct: 274 SGYVQNGMLDEARRVFDGMPEKN 296
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/515 (31%), Positives = 271/515 (52%), Gaps = 61/515 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QIKQ+Q++L ++G + K++ C+ S GDLS+ +F + Y +T WN +IRG
Sbjct: 16 QIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRG 75
Query: 63 FAEKNEPIKAFALYKQMLRSDFLP--NNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
A ++P A Y+ M S+ L + T SF L+ACA + H+Q++R G+
Sbjct: 76 TALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGF- 134
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
N DV+ T+L++ YAK G + +A+++FD+M
Sbjct: 135 ------------------------------NADVLLQTTLLDAYAKIGDLDLAQKLFDEM 164
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
P+ + SW+A+I G+ Q +A+ F M++ G RPN + GAL AC+ LGAL +G
Sbjct: 165 PQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEG 224
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLAN 298
+H Y+ ++ ++ + +IDMYAKCG ++ A VF++M ++ + + ++I A
Sbjct: 225 ESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAM 284
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H A++LF ++ G+ P+ SM++ G+EP ++
Sbjct: 285 HGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQ-RGLEPNIK 343
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYG +VDLLGRAG L+ A +V +P P+ + LL ACR +GDV++ + LVE
Sbjct: 344 HYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEM 402
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
G VLLSN+YA+ ++W+ V +VR M +V+K PG S IE+ G + +FV+G+++
Sbjct: 403 GFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQS 462
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
+ EI L I+ +K+ + D + V + G
Sbjct: 463 HSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIG 497
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/426 (37%), Positives = 245/426 (57%), Gaps = 30/426 (7%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+++TF IL L + HA +++LG+ ++ LN LL Y D A ++
Sbjct: 99 PDHFTFPQIL---PSAQPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRV 155
Query: 146 FDMSVNR-DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
F DV+SWT+++ G K G AR +FD MPE+N VSW+AM++GYV+ F +A
Sbjct: 156 FRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDA 215
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
LE F+ M+ G N A+ AC GAL +GR +H +V+++GI++D L TA++DM
Sbjct: 216 LEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDM 275
Query: 265 YAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
Y KCGC+E A VF+++P + + + +I G A H + A++LF RM+ EGV P++
Sbjct: 276 YCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDV 335
Query: 322 -----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+ + YGIEP ++HYGC+VDL GRAG LE AKKV+++
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
MP+EPD VLGAL A ++HGDVDLG+ ++E + G +VLL+N+ A+ +W V
Sbjct: 396 MPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDV 455
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
+VRR M++ V K G S+IEV G VCEF G + EE+ + + + +++ +
Sbjct: 456 ARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYV 515
Query: 479 DDGNEV 484
D +V
Sbjct: 516 PDTRDV 521
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + R WN M+ G+ + + A ++ +M N + + + AC
Sbjct: 187 LFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGA 246
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM--SVNRDVISWTSLI 161
L G H V + G + + + ++ +Y C C++ A ++F+ + + +W +I
Sbjct: 247 LARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMI 306
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
G+A G+ ++AL+ F M+ G P+
Sbjct: 307 GGFAVHGR-------------------------------GEDALKLFGRMEREGVAPDDV 335
Query: 222 GIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V LTACA G L +GR YV R GIE + ++D+Y + G +E A V
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395
Query: 281 MP 282
MP
Sbjct: 396 MP 397
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 247/463 (53%), Gaps = 27/463 (5%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
++ +L R+F + R W+ MI + + P ++ L+ +M++ F PN FS
Sbjct: 262 EMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSS 321
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
IL A A L G+ H V ++G+E FV + L+ +Y C R LFD + ++
Sbjct: 322 ILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKN 381
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
++SW +++ GY+ +G + A+ +F+ MP +N VSWSA+I G++ + F E E FN M L
Sbjct: 382 MVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMIL 441
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G PN + L ACA +LD+G+ +H + + GI+ D +GTA+ DMYAK G IE+
Sbjct: 442 LGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIES 501
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ-LEGVVPNE----------- 321
+ VF+ MP ++ ++T++I GLA + ++ LF M+ + PNE
Sbjct: 502 SKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACS 561
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM +YG++P +H+ C+VD+L RAG L A++ + MP +P+
Sbjct: 562 HSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAW 621
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
ALL+ C+ + + +L + L E + + +VLLSNIYAS +W V KVR+ M+
Sbjct: 622 AALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAK 681
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI--VLLLFGID 469
++K GCS +E+ V F S + + EI +L L G +
Sbjct: 682 GLKKSGGCSWVEIRDRVHSFYSEDGAHSQSAEIYEILELLGYE 724
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 179/365 (49%), Gaps = 54/365 (14%)
Query: 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
++ W I G+ + ++A L+ ++L S+ PN TF+ ++RACA+ +G+
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMS 205
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
+++ G+E V N L+ L + AR++FD +DV+SWT++++ Y + +
Sbjct: 206 VLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDE 265
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ AR++FD+MP++N VSWSAMI Y Q +E+L F M GF+PN + L+A
Sbjct: 266 LGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSA 325
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC--------------------- 268
A + AL G IH +V + G E D+ + +++IDMY KC
Sbjct: 326 LASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSW 385
Query: 269 ----------GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
G +E A +F+ MP R+ +++++I+G + +Q E+F M L G +
Sbjct: 386 NAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEI 445
Query: 319 PNESM--------SEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKV 355
PN+S + ++ G +G L D+ ++G +E++KKV
Sbjct: 446 PNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKV 505
Query: 356 VREMP 360
MP
Sbjct: 506 FNRMP 510
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 143/310 (46%), Gaps = 23/310 (7%)
Query: 110 CHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
A I ++ +D V+ N ++ +D ARKLFD + ISWT+LI+G+ K G
Sbjct: 73 AEADQISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYG 132
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
++ + F++ P +N VSW+A I+GYVQ EA++ F + +PN +
Sbjct: 133 RVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVR 192
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA LG G + + + G E D+ + ++I + + G I A VFD M +DV +
Sbjct: 193 ACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVS 252
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVV--------------PNESMSEI-----YGI 329
+T+++ D+ A +F M V P ES+ G
Sbjct: 253 WTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGF 312
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+P + + ++ L L+A + V ++ E D +V +L++ G+ G+
Sbjct: 313 KPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRF 372
Query: 387 TVESLVERSL 396
++++E+++
Sbjct: 373 LFDTILEKNM 382
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/486 (32%), Positives = 260/486 (53%), Gaps = 58/486 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + Q+ +H+ VSG F + K++ A+ G +S+ ++F+ + +F++ ++I
Sbjct: 25 LKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAA--GSISYTRQIFLIVPNPDSFLFTSLI 82
Query: 61 RGFAE-KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R ++ N + + Y +M+ S+ P+NYTF+ ++++CAD L G I H V+ G+
Sbjct: 83 RSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGF 142
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S DV T+L++ Y K G + AR++FDK
Sbjct: 143 GS-------------------------------DVYVQTALMSFYGKCGVLCNARKVFDK 171
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +++ V+W++MI+GY Q KEA+ F+ M+ G PN A V L+ACA LGA G
Sbjct: 172 MRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILG 231
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W+H Y NG++L+++LGT++I+MY +CG + A VFDSM R+V A+T++ISG +
Sbjct: 232 CWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTN 291
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
+ A+ELF M+ G++PN ESM E Y + P V+H
Sbjct: 292 GYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEH 351
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
+ CLVD+LGRAG+L+ A ++E+ EP + A+L AC++H + LG + E +
Sbjct: 352 HVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASE 411
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ +V+LSNIYA + + VE VR M ++K G S I++D F G++++
Sbjct: 412 PGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSH 471
Query: 456 VLMEEI 461
EI
Sbjct: 472 TETNEI 477
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 267/540 (49%), Gaps = 69/540 (12%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K + + L V+G + F +++ +++GD+S F + + + WN+MI +
Sbjct: 36 KCLHALLVVAGKVQSIFISTRLVNL--YANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93
Query: 65 EKNEPIKAFA-LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+A Y+ +L S+ P+ YTF +L+AC L G H +LG++
Sbjct: 94 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNV 150
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING-------------------- 163
FV L+H+Y+ AR LFD RD+ SW ++I+G
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210
Query: 164 -------------------YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
YAK G + A ++F+ +P K+ +SW+ +I GY Q L EA
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 270
Query: 205 LEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
+E + M+ C PN V L A A +GAL QG IH V + + LD+ + T +ID
Sbjct: 271 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
+Y KCG + A S+F +P + ++IS H + ++LF M EGV P+
Sbjct: 331 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 390
Query: 322 ---------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+ + YGI+P ++HYGC+VDLLGRAG LE A +++MP
Sbjct: 391 FVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMP 450
Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420
++PD + GALL ACR+HG+++LGK + L E + G +VLLSNIYA+ +W GV+K
Sbjct: 451 LQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDK 510
Query: 421 VRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
VR + ++K PG S IEV+ V F +G +++ +EI L + +KSL + D
Sbjct: 511 VRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPD 570
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/426 (37%), Positives = 245/426 (57%), Gaps = 30/426 (7%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+++TF IL L + HA +++LG+ ++ LN LL Y D A ++
Sbjct: 99 PDHFTFPQIL---PSAQPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRV 155
Query: 146 FDMSVNR-DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
F DV+SWT+++ G K G AR +FD MPE+N VSW+AM++GYV+ F +A
Sbjct: 156 FRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDA 215
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
LE F+ M+ G N A+ AC GAL +GR +H +V+++GI++D L TA++DM
Sbjct: 216 LEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDM 275
Query: 265 YAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
Y KCGC+E A VF+++P + + + +I G A H + A++LF RM+ EGV P++
Sbjct: 276 YCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDV 335
Query: 322 -----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+ + YGIEP ++HYGC+VDL GRAG LE AKKV+++
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
MP+EPD VLGAL A ++HGDVDLG+ ++E + G +VLL+N+ A+ +W V
Sbjct: 396 MPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDV 455
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
+VRR M++ V K G S+IEV G VCEF G + EE+ + + + +++ +
Sbjct: 456 ARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYV 515
Query: 479 DDGNEV 484
D +V
Sbjct: 516 PDTRDV 521
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + R WN M+ G+ + + A ++ +M N + + + AC
Sbjct: 187 LFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGA 246
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM--SVNRDVISWTSLI 161
L G H V + G + + + ++ +Y C C++ A ++F+ + + +W +I
Sbjct: 247 LARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMI 306
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
G+A G+ ++AL+ F M+ G P+
Sbjct: 307 GGFAVHGR-------------------------------GQDALKLFGRMEREGVAPDDV 335
Query: 222 GIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+V LTACA G L +GR YV R GIE + ++D+Y + G +E A V
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395
Query: 281 MP 282
MP
Sbjct: 396 MP 397
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/408 (34%), Positives = 222/408 (54%), Gaps = 26/408 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
W T+I G+ +A +Y+ M+ + + PN+ ++ C T + G + V+
Sbjct: 298 WGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVV 357
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
++G++ YDF+ + ++HLYA C ++ A F + +V SW +LI GY ++ I A +
Sbjct: 358 KMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAME 417
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F++MPE++ SWS MI+GY Q + ALE F+ M G +PN +V L+A A G
Sbjct: 418 LFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGT 477
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--DVFAYTSLI 293
L +GRW H YV N I + L AIIDMYAKCG I A VF + + V + ++I
Sbjct: 478 LKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAII 537
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
GLA H + ++++F ++ + N SM + I
Sbjct: 538 CGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSI 597
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
+P ++HYGC+VDLLGRAG LE A++++R MP++ D + G LL ACR HG+VD+G+ E
Sbjct: 598 DPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERAAE 657
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+L H VLLSN+YA +W VRR M+ + ++++PG S
Sbjct: 658 NLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRLPGYS 705
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 170/335 (50%), Gaps = 35/335 (10%)
Query: 19 DPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
DP + +I G+ + G L + LF + + + TMI GF++ +A L+K
Sbjct: 131 DPVSYNVMISGYVKS---GQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFK 187
Query: 78 QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137
QM +PN T + ++ A + ++ + H VI++ +E + V LL +Y C+
Sbjct: 188 QMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCS 247
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
+ AR LFD ++++SW ++NGY+K+G + AR +F+++P K+ V+W +I+GYV+
Sbjct: 248 SLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVR 307
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
V+ EAL + M G+ PN +V ++ C A+ +G+ + + V + G + +
Sbjct: 308 VERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFI 367
Query: 258 GTAIIDMYAKCGCIETAC-------------------------------SVFDSMPNRDV 286
+ II +YA CG I AC +F+ MP RDV
Sbjct: 368 QSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDV 427
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
F+++++ISG ++Q A+ELF +M G+ PNE
Sbjct: 428 FSWSTMISGYTQNEQPNLALELFHKMVASGIKPNE 462
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 174/348 (50%), Gaps = 23/348 (6%)
Query: 88 NYTFSFI--LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
NY + L+ C+D L G H V + G S +F+ N L+++Y C + A+ +
Sbjct: 64 NYELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSI 123
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
FD+ D +S+ +I+GY KSGQ+ A ++FD+MP K VS++ MI G+ Q + + +A+
Sbjct: 124 FDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAV 183
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
E F M+ G PN I ++A + G + R +H V + E +++ T ++ MY
Sbjct: 184 ELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMY 243
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325
C + A ++FD MP +++ ++ +++G + SA +F R +PN+ +
Sbjct: 244 CVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFER------IPNKDLVT 297
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVD 382
+G ++D R + A + R M EP++ ++ L++ C +
Sbjct: 298 ----------WGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMT 347
Query: 383 LGKETVESLVERSLD-HEGVHVLLSNIYASTEQWN-GVEKVRRGMEDN 428
G++ + ++V+ D ++ + + ++YA+ + N + R G ++N
Sbjct: 348 EGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKEN 395
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 38/283 (13%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+ LF + R F W+TMI G+ + +P A L+ +M+ S PN T +L A
Sbjct: 412 IDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSA 471
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSVNRDVIS 156
A + L G H V D + ++ +YA C ++ A ++F ++ +S
Sbjct: 472 IATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVS 531
Query: 157 -WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
W ++I G A G +++ ++F + ++
Sbjct: 532 PWNAIICGLAVHGHANLSLKIFSDLERRH------------------------------- 560
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+ N +G LTAC +G ++ G R + + I+ DI ++D+ + G +E A
Sbjct: 561 IKLNAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEA 620
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANH---DQSASAIELFMRMQ 313
+ SMP + DV + +L++ H D A E R++
Sbjct: 621 EEMIRSMPMKADVVIWGTLLAACRTHGNVDVGERAAENLARLE 663
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
K HFNY + +V AL C+ L QG+ IH V ++G+ + + ++
Sbjct: 57 KTGQRHFNYELV---------LVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSL 107
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
I+MY KCG + A S+FD P D +Y +ISG Q A ELF M ++G V
Sbjct: 108 INMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYT 167
Query: 322 SM 323
+M
Sbjct: 168 TM 169
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 251/456 (55%), Gaps = 34/456 (7%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F + R WNTMI G+A+ E ++A L+++ D +T++ ++
Sbjct: 145 IFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQN-- 198
Query: 104 LFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
G++ A+ + G + V N ++ Y C MD AR+LF+ ++V SW ++I
Sbjct: 199 ---GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMIT 255
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
GYA++G I+ AR FD+MP+++++SW+A+I GY Q +EAL F M+ G R N +
Sbjct: 256 GYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRST 315
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
L+ CA + AL+ G+ +H V + G+E +G A++ MY KCG I+ A VF+ +
Sbjct: 316 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 375
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
++V ++ ++I+G A H A+ LF M+ G++P++
Sbjct: 376 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 435
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM++ YGI +HY C++DLLGRAG L+ A+ +++ MP EPD GALL A R+H
Sbjct: 436 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIH 495
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
G+ +LG++ + + E D+ G++VLLSN+YA++ +W V ++R M D V+KVPG S
Sbjct: 496 GNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSW 555
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
+EV + F G+ + + I L +D +K
Sbjct: 556 VEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKK 591
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 34/310 (10%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + R WN M+ G+A+ +A ++ +M N+ +++ +L A
Sbjct: 52 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP----CKNSISWNGMLAAYVQN-- 105
Query: 104 LFVGLICHAQVI---RLGWE--SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWT 158
G I A+ + + WE S++ ++ G Y N + AR +FD RD +SW
Sbjct: 106 ---GRIEDARRLFESKADWELISWNCMMGG----YVKRNRLVDARGIFDRMPERDEVSWN 158
Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
++I+GYA++G++ A+++F++ P ++ +W+AM++GYVQ + EA F+ M
Sbjct: 159 TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS 218
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
+A I+ C +DQ R + + ++ +I YA+ G I A + F
Sbjct: 219 WNA-IIAGYVQCK---RMDQARELFEAMPCQ----NVSSWNTMITGYAQNGDIAQARNFF 270
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------SEIYGIE 330
D MP RD ++ ++I+G A A+ LF+ M+ +G N S +EI +E
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330
Query: 331 PGVQHYGCLV 340
G Q +G +V
Sbjct: 331 LGKQVHGRVV 340
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 18/193 (9%)
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+DF+ L + AR LFD RDV+SW ++++GYA++G + A+++FD+MP
Sbjct: 29 FDFLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP 88
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
KN++SW+ M+ YVQ ++A F + A C G + + R
Sbjct: 89 CKNSISWNGMLAAYVQNGRIEDARRLFE---------SKADWELISWNCMMGGYVKRNR- 138
Query: 242 IHAYVDRNGI-----ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
VD GI E D + +I YA+ G + A +F+ P RDVF +T+++SG
Sbjct: 139 ---LVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGY 195
Query: 297 ANHDQSASAIELF 309
+ A +F
Sbjct: 196 VQNGMLDEARRVF 208
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 25/231 (10%)
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
+ G + + AR +FD+MPE++ VSW+AM++GY Q KEA E F+ M N
Sbjct: 37 LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNS 92
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
G L A G ++ R + + + ++I ++ Y K + A +FD
Sbjct: 93 ISWNGMLAAYVQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDR 148
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340
MP RD ++ ++ISG A + + A LF + V +M Y VQ+
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGY-----VQN----- 198
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
GML+ A++V MP E ++ A++ +D +E E++
Sbjct: 199 ------GMLDEARRVFDGMP-EKNSVSWNAIIAGYVQCKRMDQARELFEAM 242
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/494 (31%), Positives = 259/494 (52%), Gaps = 57/494 (11%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI +H+ + + + F + + + S D+ + ++F + + +N MIR ++
Sbjct: 86 QIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRAYSM 145
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+ P + F LY++M R PN + SF++++C S L GL HA+++R G +S + +
Sbjct: 146 SHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLL 205
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
L L+ LY+ C+ + A K+F D++P+ +
Sbjct: 206 LTTLMDLYSCCDKFEEACKVF-------------------------------DEIPQWDT 234
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGALDQGRWIH 243
VSW+ +I+ + ++AL F+ MQ GF P+ + L ACA LGAL+ G +H
Sbjct: 235 VSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVH 294
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y++ +G + + L ++I MY++CG +E A S+F M R+V +++++ISG A H
Sbjct: 295 NYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGR 354
Query: 304 SAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCL 339
AIE F +MQ GV P++ MS+++GIEP + HYGC+
Sbjct: 355 EAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCM 414
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
VDLLGRAG+L+ A +++ M I+PD+ + LL ACR+H LG+ + L+E
Sbjct: 415 VDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEA 474
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +VLL NIY+S W+ V +R+ M++ ++ PGCS IE+ G V EFV + + +
Sbjct: 475 GDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTD 534
Query: 460 EIVLLLFGIDKHLK 473
EI +L I K LK
Sbjct: 535 EIYEMLDEIGKQLK 548
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 165/513 (32%), Positives = 262/513 (51%), Gaps = 61/513 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS--ASDIGDLSHGYRLFVCLQYRTTFIW-N 57
++ + Q+ + SG P V +++ C+ + L++ ++F + +W N
Sbjct: 32 LRALAQLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIPTPGDVVWYN 91
Query: 58 TMIRGFAEKNE-PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
T++RG+A ++ +A + +ML P+ YTF +L+ACA G H ++
Sbjct: 92 TLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVK 151
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G +++VL L+++YA C G A+S AR M
Sbjct: 152 TGAADHEYVLPTLINMYAEC--------------------------GDARS-----ARAM 180
Query: 177 FDKMPEKN-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
F ++P + VS++AMI V+ EAL F MQ G +P + L+ACA LGA
Sbjct: 181 FGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGA 240
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ GRWIH YV + G++ + + TA+IDMY KCG +E A VF M +RD A++ +I
Sbjct: 241 LELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVA 300
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
ANH AI LF M+ +G+ P+ +SM E YGI P
Sbjct: 301 YANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVP 359
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
G++HYGC+ DLL R+G LE A K + E+PI+P + LL+AC HG VDLGK E +
Sbjct: 360 GIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAVDLGKRVFERI 419
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+E H +V+ SN+ A+T +W + +VR+ M + V KVPGCS IE+D V EF +G
Sbjct: 420 LELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDNRVHEFFAG 479
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ + ++ ++ + + LK + + + ++V
Sbjct: 480 DGRHPQSQDARRMVDQVIEQLKLVGYVPNTSQV 512
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/488 (31%), Positives = 260/488 (53%), Gaps = 60/488 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ G+ S G + +F + + WN MI G+ E +A L+K+M++++
Sbjct: 136 VTGYASR---GYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T ++ A A + + +G H+ + G+ S ++N L+ Y+ C
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKC--------- 243
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
G++ A +F + K+ +SW+ +I GY ++L+KEAL
Sbjct: 244 ----------------------GEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEAL 281
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIID 263
F M G PN ++ L ACA LGA+D GRWIH Y+D+ G+ L T++ID
Sbjct: 282 LLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 341
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
MY+KCG IE A VF+SM ++ + A+ ++I G A H ++ +A ++F RM+ + P++
Sbjct: 342 MYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDIT 401
Query: 322 ----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
SM+ Y I P ++HYGC++DLLG +G+ + A++++ M
Sbjct: 402 FVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTM 461
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419
+EPD + +LL AC++HG+V+LG++ ++L + ++ G +VLLSNIYA+ +WN V
Sbjct: 462 TMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVA 521
Query: 420 KVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479
++R + D ++KVPGCS IE+D VV EF+ G++ + EI +L ++ L+ F
Sbjct: 522 RIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVP 581
Query: 480 DGNEVATE 487
D +EV E
Sbjct: 582 DTSEVLQE 589
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 209/427 (48%), Gaps = 64/427 (14%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L + +F +Q IWNTM RG A +P+ A LY M+ LPN+YTF F+L++
Sbjct: 13 LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
CA GL H V++LG+E +V L+ +Y ++ A K+FD S +RDV+S+
Sbjct: 73 CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+L+ GYA G I AR MFD++P K+ VSW+AMI+GYV+ +KEALE F M R
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+ + +V ++A A G+++ GR +H+++ +G ++ + A+ID Y+KCG +ETAC +
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM-------------- 323
F + +DV ++ LI G + + A+ LF M G PN+
Sbjct: 253 FLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAI 312
Query: 324 -----------SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV----------------- 355
+ G+ L+D+ + G +EAA +V
Sbjct: 313 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIF 372
Query: 356 -----------------VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL-----VE 393
+R+ I+PD+ LL+AC G +DLG+ S+ +
Sbjct: 373 GFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKIT 432
Query: 394 RSLDHEG 400
L+H G
Sbjct: 433 PKLEHYG 439
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 238/461 (51%), Gaps = 42/461 (9%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ + ++F R WN +I G+ + E KA +YK M P++ T ++
Sbjct: 130 GEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLV 189
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+CA L G + V G + N L+ +++ C + AR++FD R ++
Sbjct: 190 SSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIV 249
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
S ++FD M EK+ V W+AMI G VQ ++AL F MQ
Sbjct: 250 S------------------KLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSN 291
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ ++ L+AC+ LGALD G WIH Y++++ + L++ LGT+++DMYAKCG I A
Sbjct: 292 TDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEAL 351
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VF + R+ YT++I GLA H +++AI F M G+ P+E
Sbjct: 352 CVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGG 411
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M + + P ++HY +VDLLGRAG+LE A K++ MP+E D V GAL
Sbjct: 412 MIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGAL 471
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L CR+HG+V LG++ + L+E G++VLL +Y W ++ RR M + V
Sbjct: 472 LFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVE 531
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
K+PGCS IEV+G+V EF+ +++ E+I L + H+
Sbjct: 532 KIPGCSSIEVNGIVSEFIVRDKSRPESEKIYDCLHCLGTHM 572
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 164/327 (50%), Gaps = 47/327 (14%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
+ ++G + DPFA ++I FC+ S+ L++ ++ ++ F WN IRGF+E P
Sbjct: 1 MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60
Query: 71 KAFALYKQMLRS---DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
A YKQMLR + P+++T+ + + CAD +G + V +L E V N
Sbjct: 61 DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120
Query: 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
+H++A+C M+ ARK+FD S RD++SW LINGY K G+
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGE------------------ 162
Query: 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
++A+E + M+ G +P+ ++G +++CA LG L++G+ + YV
Sbjct: 163 -------------GEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVK 209
Query: 248 RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-------------DVFAYTSLIS 294
NG+ + I L A++DM++KCG I A +FD++ R DV + ++I
Sbjct: 210 ANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIG 269
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE 321
G +S A+ LF MQ P+E
Sbjct: 270 GSVQAKRSQDALALFQEMQTSNTDPDE 296
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 255/462 (55%), Gaps = 27/462 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+ QI +H+ + I C A D + + +F Q ++N+MI+G
Sbjct: 24 QLPQIHAHILRHHLHQSNQILSHFISVCGALD--KMGYANLVFHQTQNPNLLLFNSMIKG 81
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ + L+ QM P+ +TF+ +L++C+ +G H VI +G+E +
Sbjct: 82 YSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERF 141
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ G++ LY +C M+ A+K+FD ++RDVI W +I G+ K G I + ++F +M +
Sbjct: 142 SSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRD 201
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ VSW++MI G Q EALE F M GF P+ A +V L CA LGA+D G WI
Sbjct: 202 RSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWI 261
Query: 243 HAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H+Y + + + D I +G +++D Y KCG +ETA VF+ MP ++V ++ ++ISGL + +
Sbjct: 262 HSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGK 321
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
+LF M +GV PN+ SM+ + +EP ++H+G
Sbjct: 322 GELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFG 381
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLL R G +E A+ +VR MP+ P+ + G+LL+A R GDV + V+ L+E
Sbjct: 382 CMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHAECAVKELIELEPW 441
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+ G +VLLSN+YA +W+ VEKVR M++ +RK PG S++
Sbjct: 442 NSGNYVLLSNVYAEDGKWDEVEKVRALMKEKNIRKNPGQSMV 483
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 165/506 (32%), Positives = 252/506 (49%), Gaps = 59/506 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + QI S + VSG D F V ++I F S S DLS+ + + WN +I
Sbjct: 677 IKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVHPVPLPWNILI 736
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG+A+ N P A +Y+ M PN+ TF F+L+ACA G H +VI+ G +
Sbjct: 737 RGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLD 796
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N L++ Y +C +K+ D A ++FD+M
Sbjct: 797 CDVYVNNNLVNFYGSC------KKILD-------------------------ACKVFDEM 825
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+ VSW+A+I V+ EA+ +F M+ GF P+ +V L CA +G L GR
Sbjct: 826 PERTVVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGR 885
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WIH+ V G+ L+ LGTA++DMYAK G + A VFD M ++V+ ++++I GLA H
Sbjct: 886 WIHSQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHG 945
Query: 301 QSASAIELFMRMQLEGVV-PN------------------------ESMSEIYGIEPGVQH 335
+ +ELF+ M ++ PN M YGI+P + H
Sbjct: 946 FAKEGLELFLDMMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVH 1005
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD---LGKETVESLV 392
YG +VD+LGRAG+L+ A + +MP +PD V LL+AC +H D + + + L+
Sbjct: 1006 YGAMVDILGRAGLLKEAYNFITKMPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLL 1065
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E G V+++N+YA W KVRR M D ++K G S +E+ G + F SG
Sbjct: 1066 ELEPRRSGNFVMVANMYADAGMWEKAAKVRRVMRDGGLKKKAGESCVELSGSIHRFFSGY 1125
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFF 478
+ E + LL G++ H++ + F
Sbjct: 1126 DSQDDKEGMYQLLDGLNLHMQMMVMF 1151
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 217/354 (61%), Gaps = 24/354 (6%)
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D AR+LFD +RD++ W S+I+GYA+ G++ AR +F++MPE+N +SWS +I+GYV+
Sbjct: 229 VDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRF 288
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
EALE F M CG +P+ VGA+ ACA LGAL+QGRW+H+Y+++ + D+++
Sbjct: 289 GEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQ 348
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
TA+IDMY KCG ++ A +F+SMP + V + +I GL H AI+LF +M+ E
Sbjct: 349 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 408
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
++ M + G+EP V+HYG L+DLLGRAG ++ A+
Sbjct: 409 MDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 468
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ MP+EP + G+LL +CR H V+L + +VE L D GV+VLLSNIYA
Sbjct: 469 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 528
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
W+ V ++R+ M ++K G S+IEVDG + EFV+G ++ EEI L L+ +
Sbjct: 529 WDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNL 582
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 63/333 (18%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R F WNT++R A + P ++ + +M R+ P+ YTF +L+AC VGL+
Sbjct: 80 RHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVV 138
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H + +R G ++ F N L+ Y RK+FD V RD++SW S++ GY G++
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV-RDLVSWNSMVAGYVGCGEV 197
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
+A+ +FD+M +++A SW+ MI+GY ++
Sbjct: 198 DLAQDLFDEMRQRDAFSWATMIDGYGEM-------------------------------- 225
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
G +D+ R + + + D++ ++ID YA+ G ++ A +F+ MP R+V +++
Sbjct: 226 --AGGVDRARELFDQMP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWS 279
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG---------- 332
+I G + A+E F RM G+ P+ + +++ +E G
Sbjct: 280 IVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKK 339
Query: 333 -----VQHYGCLVDLLGRAGMLEAAKKVVREMP 360
V L+D+ + G L+ AK + MP
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMP 372
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 9/252 (3%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R WN+MI G+A +A L+++M N ++S ++
Sbjct: 227 GGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPER----NVISWSIVI 282
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--- 152
L +++R G + G + A ++ R L +
Sbjct: 283 DGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVL 342
Query: 153 -DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
DV+ T+LI+ Y K G++ +A+ +F+ MP+K+ V+W+ MI G +A++ FN M
Sbjct: 343 FDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQM 402
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGC 270
+ + I+ LT+C G + +G I ++++ G+E + A+ID+ + G
Sbjct: 403 ETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGR 462
Query: 271 IETACSVFDSMP 282
++ A + ++MP
Sbjct: 463 VDQARNTIETMP 474
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 43/302 (14%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
LRAC+ S L CHA ++ G HL A+ PAR + +
Sbjct: 17 LRACSSASH---ALQCHALLLTSG------------HLAAS-----PARLSNLLLLALAS 56
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
S + +A S +A + ++A W+ ++ + + +L +F+ M+
Sbjct: 57 ASASPSAADHADSVFAHLAEE-----ASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRA 110
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ L AC G +H R G++ D+ A+I Y + G +
Sbjct: 111 AVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSG 170
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
VFD RD+ ++ S+++G + A +LF M+ +M + YG
Sbjct: 171 RKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG------ 223
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
AG ++ A+++ +MP + D ++++ HG +D + E + ER
Sbjct: 224 ---------EMAGGVDRARELFDQMP-DRDLVCWNSMIDGYARHGRMDEARVLFEEMPER 273
Query: 395 SL 396
++
Sbjct: 274 NV 275
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 229/430 (53%), Gaps = 25/430 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F + R F W MI F + +A ++ M R + + ++
Sbjct: 214 GMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVV 273
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA + + G +CH VIR G S V N L+H+Y++C + AR+LFD D
Sbjct: 274 SACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQY 333
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I GY K+G + A +F MP K+ VSWS +I+G VQ + +AL F+ MQ G
Sbjct: 334 SWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQG 393
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
RP+ IV ++AC L AL++G+ +H Y+ +N + ++LGT++I+MY KCGC+E A
Sbjct: 394 IRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAAL 453
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL-EGVVPNES------------ 322
F+ M + + ++I GLA + ++++F M+ + PNE
Sbjct: 454 EAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGVLSACRHA 513
Query: 323 ------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M Y I P ++HYGC+VDLLGRAG ++ A+ +++ MP+ PD GA
Sbjct: 514 GLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWGA 573
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL AC HG+ ++G+ LV R H+G +LSNIYA W V+ +R M+ V
Sbjct: 574 LLGACWKHGEYEVGERVGRKLVNRDPLHDGFQTMLSNIYAKEGMWQSVDDLRGSMKQRHV 633
Query: 431 RKVPGCSLIE 440
+KV G S+++
Sbjct: 634 QKVSGHSVVK 643
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 174/384 (45%), Gaps = 67/384 (17%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLS--HGYRLFVCLQYRTTFIWNTM 59
+ + QI + SG L D FA +++ F SAS + L H RL ++Y F NT+
Sbjct: 18 RHLLQIHAQFIASGLLADAFAASRLLLFTSASRLLPLPFHHSLRLLRLVRYPNAFSCNTL 77
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++ P LY + P++YT + ACA + G HA + G+
Sbjct: 78 LKSALIGGMPHLCLPLYASLPAP---PDSYTHPILAAACASRKDVIEGRQVHAHAVSHGF 134
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
++ N L+ +Y+ C C+ AR++FD D +SW +++ Y +G + A ++F +
Sbjct: 135 GDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQ 194
Query: 180 MPEKNAV-------------------------------SWSAMINGYVQVDLFKEALEHF 208
MP++NA +W+AMI+ + + D+F EAL F
Sbjct: 195 MPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVF 254
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
+ M+ + + +V ++ACA + G+ H V R G+ + + A+I MY+ C
Sbjct: 255 SCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSC 314
Query: 269 -------------------------------GCIETACSVFDSMPNRDVFAYTSLISGLA 297
G ++ A ++F +MPN+D +++++ISG
Sbjct: 315 LDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCV 374
Query: 298 NHDQSASAIELFMRMQLEGVVPNE 321
++QS+ A+ +F MQ +G+ P+E
Sbjct: 375 QNNQSSDALTVFDNMQAQGIRPDE 398
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
ACA + +GR +HA+ +G ++ L A+I MY+ CGC+ A VFD+ P D
Sbjct: 111 AACASRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAV 170
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
++ ++++ + A+E+F +M SM V L GR G
Sbjct: 171 SWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVSSM----------------VSLFGRRG 214
Query: 348 MLEAAKKV 355
M++ A++V
Sbjct: 215 MVDEARRV 222
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 236/473 (49%), Gaps = 55/473 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F + R WNTMI G+A+ E +AFA + +ML P N + L
Sbjct: 292 GSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGAL 351
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L G H RL +D + FD+SV
Sbjct: 352 HACANLGDLERGRYVH----RL---------------------LDEKKIGFDVSV----- 381
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SLI+ Y+K ++ IA +F + K V+W+AMI GY Q EAL F MQ
Sbjct: 382 -MNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHD 440
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ +V +TA A L Q +WIH R ++ ++ + TA+ID +AKCG I+TA
Sbjct: 441 IKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTAR 500
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD M R V + ++I G + A++LF MQ V PNE
Sbjct: 501 KLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSG 560
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM E YG+EP + HYG +VDLLGRAG L+ A K +++MP++P VLGA+
Sbjct: 561 LVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAM 620
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR+H +V+LG++T + L + D G HVLL+N+YAS W+ V +VR ME ++
Sbjct: 621 LGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQ 680
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
K PGCSL+E+ V F SG + + I L + +K+ + D N +
Sbjct: 681 KTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI 733
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 165/325 (50%), Gaps = 36/325 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K++ QI + +G + K+I FC + I + + R+F ++++ +++TM
Sbjct: 57 LKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAA---RVFEPVEHKLDVLYHTM 113
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++G+A+ + A Y++M + +P Y F+++L+ + L G H VI G+
Sbjct: 114 LKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGF 173
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+S LF M T+++N YAK QI A +MF++
Sbjct: 174 QS----------------------NLFAM---------TAVVNLYAKCRQIEDAYKMFER 202
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP+++ VSW+ ++ GY Q + A++ MQ G +P+ +V L A A L AL G
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R IH Y R G E + + TA++D Y KCG + +A VF M +R+V ++ ++I G A +
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322
Query: 300 DQSASAIELFMRMQLEGVVP-NESM 323
+S A F++M EGV P N SM
Sbjct: 323 GESEEAFATFLKMLDEGVEPTNVSM 347
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 153/321 (47%), Gaps = 35/321 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+++ ++I + +G + FA+ ++ + I D Y++F + R WNT+
Sbjct: 158 LRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIED---AYKMFERMPQRDLVSWNTV 214
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+ G+A+ +A + QM + P++ T +L A AD L +G H R G+
Sbjct: 215 VAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGF 274
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E +++N T++++ Y K G + AR +F
Sbjct: 275 E---YMVN----------------------------VATAMLDTYFKCGSVRSARLVFKG 303
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +N VSW+ MI+GY Q +EA F M G P + ++GAL ACA LG L++G
Sbjct: 304 MSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R++H +D I D+ + ++I MY+KC ++ A SVF ++ ++ V + ++I G A +
Sbjct: 364 RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQN 423
Query: 300 DQSASAIELFMRMQLEGVVPN 320
A+ LF MQ + P+
Sbjct: 424 GCVNEALNLFCEMQSHDIKPD 444
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 233/414 (56%), Gaps = 30/414 (7%)
Query: 86 PNNYTFSFILRACAD--TSCLFVGLICHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPA 142
PN+ TF +L D + +G + H +LG + ++ V +L +Y+ A
Sbjct: 12 PNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRFRKA 71
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
R +FD ++ ++W ++I+GY ++GQ+ A ++FD+MPE++ +SW+AMING+V+ +
Sbjct: 72 RLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHE 131
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EAL F MQ+ G +P++ I+ AL AC LGAL G WIH YV + ++ + ++I
Sbjct: 132 EALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLI 191
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-- 320
D+Y +CGC+E A VFD M R V ++ S+I G A + + ++ F +MQ EG PN
Sbjct: 192 DLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAV 251
Query: 321 ----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+SM Y I P ++HYGCLVDL RAG LE A KVV+
Sbjct: 252 TFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQS 311
Query: 359 MPIEPDNYVLGALLNACRVHG-DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP++P+ V+G+LL ACR G + L + ++ L + ++ +V+LSN+YA+ +W G
Sbjct: 312 MPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVILSNMYAADGKWEG 371
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI--VLLLFGID 469
K+RR M+ ++K PG S IE+D F++G+ T+V I VL L D
Sbjct: 372 ASKMRRKMKGLGLKKEPGFSSIEIDDCTHVFMAGDNTHVETTNIREVLELLSSD 425
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 136/326 (41%), Gaps = 45/326 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +LF + R W MI GF +K +A A +++M S P+ L
Sbjct: 97 GQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 156
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H V+ +++ V N L+ LY C C++ AR++FD R V+
Sbjct: 157 AACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 216
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G E+L +F MQ G
Sbjct: 217 SWNSVIVGFAANGHA-------------------------------HESLVYFRKMQEEG 245
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F+PN GAL AC +G +++G R+ + I I ++D+Y++ G +E A
Sbjct: 246 FKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDA 305
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
V SMP + + SL++ + E M+ + V + S
Sbjct: 306 LKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHS----------- 354
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A K+ R+M
Sbjct: 355 -NYVILSNMYAADGKWEGASKMRRKM 379
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 264/490 (53%), Gaps = 58/490 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++++Q +HL V+G + K++ A+ G +++ RLF + +F++N++I
Sbjct: 23 LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAA--GSIAYTRRLFRSVSDPDSFLFNSLI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ + + A Y++ML S +P+ YTF+ +++ACAD S L +G I H+ V G+
Sbjct: 81 KASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYA 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV +L+ YAKS +AR++FD+M
Sbjct: 141 SNSFV-------------------------------QAALVTFYAKSCTPRVARKVFDEM 169
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+++ ++W++MI+GY Q L EA+E FN M+ G P+ A V L+AC+ LG+LD G
Sbjct: 170 PQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGC 229
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H + GI ++++L T++++M+++CG + A +VFDSM +V ++T++ISG H
Sbjct: 230 WLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHG 289
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
A+E+F RM+ GVVPN SM + YG+ PGV+H+
Sbjct: 290 YGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHH 349
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERS 395
C+VD+ GR G+L A + VR + E V A+L AC++H + DLG E E+L+
Sbjct: 350 VCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAE 409
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
++ G +VLLSN+YA + + VE VR M ++K G S I+V+ F G++++
Sbjct: 410 PENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSH 469
Query: 456 VLMEEIVLLL 465
EI L
Sbjct: 470 PETNEIYCYL 479
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 165/488 (33%), Positives = 261/488 (53%), Gaps = 73/488 (14%)
Query: 11 LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGY-----RLF--VCLQYRTTFIWNTMIRGF 63
L ++ L+D + F S D G + HG LF + ++ + WN+MI G+
Sbjct: 173 LGIARQLFDRMMKRDSVSFNSMID-GYVKHGMVKSARELFDVMPMEQKNLISWNSMISGY 231
Query: 64 AEKNEPIK-AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
A E ++ A+ L+++M + D + S+
Sbjct: 232 ARSEEGLRVAWELFEEMPKRDLI-----------------------------------SW 256
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ +++G + C M+ A LF+ RDV+SW ++++GYAK G+I IAR +FD+MPE
Sbjct: 257 NSMIDGCV----KCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPE 312
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTACAFLGALDQGRW 241
++ +S +AM+ GYVQ EAL F+ M P++A ++ L+A A LG D+G
Sbjct: 313 RDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVA 372
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H Y++ NG L LG A+IDMYAKCG I+ A SVF+ + ++ + + ++I GLA H
Sbjct: 373 LHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGL 432
Query: 302 SASAIELFMRMQL------------------------EGVVPNESMSEIYGIEPGVQHYG 337
A ELFM M+ EG++ E M ++ +EP +QHYG
Sbjct: 433 GEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYG 492
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VD+LGRAG +E AKK V +MPIEP++ V LL+ACR H + +G+ + L+
Sbjct: 493 CMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSY 552
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ +VLLSNIYA WN V ++R M+ +++K+PGCS IE++G V EF ++++
Sbjct: 553 NPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQ 612
Query: 458 MEEIVLLL 465
+ EI +L
Sbjct: 613 VREIYSML 620
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/466 (33%), Positives = 254/466 (54%), Gaps = 27/466 (5%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
I +L + +LF Q TF++N +I+ + ++P ++ LY + P+++TF+FI
Sbjct: 22 IPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFI 81
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A A S + H+Q R G+ES F L+ YA + AR++FD RDV
Sbjct: 82 FAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDV 141
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL- 213
W ++I GY + G + A ++FD MP KN SW+ +I+G+ Q + EAL+ F M+
Sbjct: 142 PVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKD 201
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
+PNH +V L ACA LG L+ GR + Y NG +I + A I+MY+KCG I+
Sbjct: 202 KSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDV 261
Query: 274 ACSVFDSMPN-RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
A +F+ + N R++ ++ S+I LA H + A+ LF +M EG P+
Sbjct: 262 AKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACV 321
Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
+SM E++ I P ++HYGC++DLLGR G L+ A +++ MP++PD V
Sbjct: 322 HGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVW 381
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G LL AC HG+V++ + E+L + + G V++SNIYA+ E+W+GV ++R+ M+
Sbjct: 382 GTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKE 441
Query: 429 EVRKVPGCS-LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+ K G S +EV V +F ++++ EI +L I + +K
Sbjct: 442 TMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 487
>gi|359485621|ref|XP_003633297.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Vitis
vinifera]
Length = 454
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 232/423 (54%), Gaps = 36/423 (8%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR---ACADTSCLFVGLICH 111
++N++IRG+ EP K ++ ML PNN TF I++ +C + +G H
Sbjct: 31 LYNSLIRGYLNFVEPHKTLLIFTHMLAHQARPNNLTFPSIIKKAASCLPSLAFMIGTPLH 90
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
VI+ G F+ L+ LYA + A +F+ V+S ++++ K+G +
Sbjct: 91 THVIKRGLWHDLFIQTSLVVLYARLCKVSDACPVFEEISRPCVVSSNAMLDALGKNGDMG 150
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM------QLCGFRPNHAGIVG 225
A +F+ MPE++ VSW+++ING+ + F+EA++ F M + C +PN A V
Sbjct: 151 SALXLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEATFVS 210
Query: 226 ALTACAFL---GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
L++C L GAL QG+ IH Y+ RN +E + +GTA+I +Y K GC+E +F+ M
Sbjct: 211 VLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENVMKIFNGMV 270
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+ V + ++IS LA + + A++LF +M+++G+ P+E
Sbjct: 271 VKGVCTWNAMISSLACNGREKQALDLFEKMKMKGLCPDEVTFVAVITACARSKFVVLGLG 330
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
SM +G+ P + HYGC+VDLLGRAG+LE A + ++ MP EPD VLGALL AC+VH
Sbjct: 331 FFQSMRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEFIKSMPFEPDATVLGALLGACKVH 390
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
G ++LG E L+E H G +V LSNIYA E W R+ M + + K+P S+
Sbjct: 391 GAIELGNEVGRRLLEFQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGISKIPAYSM 450
Query: 439 IEV 441
I+V
Sbjct: 451 IDV 453
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 53/263 (20%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML-----RSDFL-PNNY 89
GD+ LF + R W ++I GF +A + +M+ RS + PN
Sbjct: 147 GDMGSALXLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEA 206
Query: 90 TFSFILRACAD---TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
TF +L +C + L G H +IR E F+ L+ LY C++ K+F
Sbjct: 207 TFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENVMKIF 266
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
+ V + V +W ++I+ A +G+ K+AL+
Sbjct: 267 NGMVVKGVCTWNAMISSLACNGRE-------------------------------KQALD 295
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAF-------LGALDQGRWIHAYVDRNGIELDIILGT 259
F M++ G P+ V +TACA LG R V R ++
Sbjct: 296 LFEKMKMKGLCPDEVTFVAVITACARSKFVVLGLGFFQSMRCDFGVVPR------MMHYG 349
Query: 260 AIIDMYAKCGCIETACSVFDSMP 282
++D+ + G +E A SMP
Sbjct: 350 CVVDLLGRAGLLEEATEFIKSMP 372
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 227/422 (53%), Gaps = 56/422 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L RLF + R WN MI G+A+ +A A +++M R++ PN T +L
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA + L +G + + G S ++N L+ +Y+ C
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKC------------------- 312
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G + AR +F+ + EK+ +SW+ MI GY ++ +KEAL F MQ
Sbjct: 313 ------------GDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETA 274
PN V L ACA+LGALD G+WIHAY+D+ + L + L T++IDMYAKCG IE A
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAA 420
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
VF M + + ++ ++ISGLA H + A+ELF +M+ EG P++
Sbjct: 421 KQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHA 480
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM E Y I P +QHYGC++DLLGRAG+ + A+ +++ M ++PD + G+
Sbjct: 481 GLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGS 540
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACRVHG+V+LG+ + L E ++ G +VLLSNIYA+ +W+ V ++R + D +
Sbjct: 541 LLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGM 600
Query: 431 RK 432
+K
Sbjct: 601 KK 602
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 230/452 (50%), Gaps = 62/452 (13%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +KQI S + +G FA+ K+I FC+ S G+LS+ LF ++ FIWNTMIR
Sbjct: 46 QNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIR 105
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G + + P+ A Y +ML PN+YTF F+L++CA G H V++LG ES
Sbjct: 106 GNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLES 165
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV L+++YA + A +F S RD +S+T+LI GY G + AR++F+++P
Sbjct: 166 DPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIP 225
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
++AVSW+AMI GY Q F+EAL F M+ PN + +V L+ACA G+L+ G W
Sbjct: 226 VRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNW 285
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+ ++++ +G+ ++ L A+IDMY+KCG ++ A +F+ + +D+ ++ +I G ++ +
Sbjct: 286 VRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNS 345
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC----------------------- 338
A+ LF +MQ V PN+ I P + G
Sbjct: 346 YKEALALFRKMQQSNVEPNDVT--FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSL 403
Query: 339 ---LVDLLGRAGMLEAAKKV----------------------------------VREMPI 361
L+D+ + G +EAAK+V +R+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
EPD+ +L+AC G V+LG++ S+VE
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 244/450 (54%), Gaps = 57/450 (12%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L R+ + R W MI G++++ +A L+ +ML S PN +TF+ +L +
Sbjct: 61 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C +S +G H+ VI+ +ES+ FV
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFV-------------------------------G 149
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+SL++ YAK+G+I AR++FD +PE++ VS +A+I+GY Q+ L +EAL+ F +Q G R
Sbjct: 150 SSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMR 209
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
N+ LTA + L ALD GR +H++V R + ++L ++IDMY+KCG + + +
Sbjct: 210 SNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRI 269
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS------------- 324
FDSMP R V ++ +++ G + H A+ELF M+ E V +S++
Sbjct: 270 FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGM 329
Query: 325 -----EIY--------GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
EI+ G EP ++HYGC+VDL GRAG +E A + +++MP EP + G+L
Sbjct: 330 EDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSL 389
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACRVH +V +G+ L+E ++ G +V+LSN+YAS +W+ V VR M++ V
Sbjct: 390 LGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVI 449
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
K PG S IE+D + F + +R++ EE+
Sbjct: 450 KEPGRSWIELDQTLHTFHASDRSHPRKEEV 479
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 143/322 (44%), Gaps = 58/322 (18%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+ +L C + + G HA +I+ +E ++ L+ LY C C+ AR++
Sbjct: 13 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVL---- 68
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
D+MPE+N VSW+AMI+GY Q EAL F
Sbjct: 69 ---------------------------DEMPERNVVSWTAMISGYSQRGYASEALHLFVE 101
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M + G PN LT+C GR IH+ V + E I +G++++DMYAK G
Sbjct: 102 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 161
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ES 322
I A VFD +P RDV + T++ISG A A++LF R+Q EG+ N +
Sbjct: 162 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 221
Query: 323 MSEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+S + ++ G Q + L+D+ + G L ++++ MP E
Sbjct: 222 LSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVIS 280
Query: 368 LGALLNACRVHGDVDLGKETVE 389
A+L HG LG+E VE
Sbjct: 281 WNAMLVGYSKHG---LGREAVE 299
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 129/312 (41%), Gaps = 45/312 (14%)
Query: 7 IQSHLTVSGTLWDPFA-VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+SH+ V +L D +A GKI C A R+F L R +I G+A+
Sbjct: 142 FESHIFVGSSLLDMYAKAGKI---CEAR---------RVFDGLPERDVVSCTAIISGYAQ 189
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+A L++++ R N T++ +L A + + L G H+ V+R Y +
Sbjct: 190 LGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 249
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
N L+ +Y+ C + +R++FD R VISW +++ GY+K G A ++F M E+N
Sbjct: 250 QNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 309
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V +P+ + L+ C+ G D+G I
Sbjct: 310 V------------------------------KPDSVTFLAVLSGCSHGGMEDRGLEIFYE 339
Query: 246 V--DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+ ++G E +I ++D++ + G +E A MP A + G Q+
Sbjct: 340 MVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNV 399
Query: 304 SAIELFMRMQLE 315
E R LE
Sbjct: 400 HIGEFVARRLLE 411
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 23/173 (13%)
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M + G G LT C A+ +G+ +HA++ + E + L T +I +Y KC C
Sbjct: 1 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------S 322
+ A V D MP R+V ++T++ISG + ++ A+ LF+ M + G PNE S
Sbjct: 61 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120
Query: 323 MSEIYGIEPGVQHY---------------GCLVDLLGRAGMLEAAKKVVREMP 360
+ G + G Q + L+D+ +AG + A++V +P
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 217/354 (61%), Gaps = 24/354 (6%)
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D AR+LFD +RD++ W S+I+GYA+ G++ AR +F++MPE+N +SWS +I+GYV+
Sbjct: 229 VDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRF 288
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
EALE F M CG +P+ VGA+ ACA LGAL+QGRW+H+Y+++ + D+++
Sbjct: 289 GEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQ 348
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
TA+IDMY KCG ++ A +F+SMP + V + +I GL H AI+LF +M+ E
Sbjct: 349 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 408
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
++ M + G+EP V+HYG L+DLLGRAG ++ A+
Sbjct: 409 MDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 468
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ MP+EP + G+LL +CR H V+L + +VE L D GV+VLLSNIYA
Sbjct: 469 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 528
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
W+ V ++R+ M ++K G S+IEVDG + EFV+G ++ EEI L L+ +
Sbjct: 529 WDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNL 582
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 63/333 (18%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R F WNT++R A + P ++ + +M R P+ YTF +L+AC VGL+
Sbjct: 80 RHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPGCRVGLVV 138
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H + +R G ++ F N L+ Y RK+FD V RD++SW S++ GY G++
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV-RDLVSWNSMVAGYVGCGEV 197
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
+A+ +FD+M +++A SW+ MI+GY ++
Sbjct: 198 DLAQDLFDEMRQRDAFSWATMIDGYGEM-------------------------------- 225
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
G +D+ R + + + D++ ++ID YA+ G ++ A +F+ MP R+V +++
Sbjct: 226 --AGGVDRARELFDQMP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWS 279
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG---------- 332
+I G + A+E F RM G+ P+ + +++ +E G
Sbjct: 280 IVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKK 339
Query: 333 -----VQHYGCLVDLLGRAGMLEAAKKVVREMP 360
V L+D+ + G L+ AK + MP
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMP 372
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R W+ +I G+ EP +A +++ML P+ +
Sbjct: 258 GRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAV 317
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L G W LH Y ++ + LFD+ V
Sbjct: 318 AACAQLGALEQGR----------W----------LHSY-----LEKKKVLFDVVVQ---- 348
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+LI+ Y K G++ +A+ +F+ MP+K+ V+W+ MI G +A++ FN M+
Sbjct: 349 --TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETER 406
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETA 274
+ ++ LT+C G + +G I ++++ G+E + A+ID+ + G ++ A
Sbjct: 407 APMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQA 466
Query: 275 CSVFDSMP 282
+ ++MP
Sbjct: 467 RNTIETMP 474
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 43/302 (14%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
LRAC+ S L CHA ++ G HL A+ PAR + +
Sbjct: 17 LRACSSASH---ALQCHALLLTSG------------HLAAS-----PARLSNLLLLALAS 56
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
S + +A S +A + ++A W+ ++ + + +L +F+ M+
Sbjct: 57 ASASPSAADHADSVFAHLAEE-----ASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRV 110
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ L AC G +H R G++ D+ A+I Y + G +
Sbjct: 111 AVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSG 170
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
VFD RD+ ++ S+++G + A +LF M+ +M + YG
Sbjct: 171 RKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG------ 223
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
AG ++ A+++ +MP + D ++++ HG +D + E + ER
Sbjct: 224 ---------EMAGGVDRARELFDQMP-DRDLVCWNSMIDGYARHGRMDEARVLFEEMPER 273
Query: 395 SL 396
++
Sbjct: 274 NV 275
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 237/459 (51%), Gaps = 38/459 (8%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K+ +Q+ +H+ G L D F +I +A G L+ +F + + WN++I
Sbjct: 957 KEGEQMHNHVIKLGFLLDIFVSNSLIYLYAA--CGALACARSVFNEMLVKDVVSWNSLIG 1014
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD------TSCLFVGLICHAQVI 115
G+++ N + L+K M + + T ++ AC C+ V I H +
Sbjct: 1015 GYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCM-VRYIEHNHI- 1072
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
E ++ N L+ Y + A K+F +++ ++ ++I YAK G + A++
Sbjct: 1073 ----EVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKK 1128
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD++P K+ +SWS+MI Y Q F ++LE F MQ +P+ I L+ACA LGA
Sbjct: 1129 IFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGA 1188
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
LD G+WIH YV RN I+ D I+ ++IDM+AKCGC++ A VF M +D ++ S+I G
Sbjct: 1189 LDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILG 1248
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
LAN+ A+++F M EG PN E M ++ +EP
Sbjct: 1249 LANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEP 1308
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++HYGC+VD+L RAG LE A + EMP+ PD V LL ACR HG+V + + + L
Sbjct: 1309 QMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKL 1368
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
E + +LLSNIYAS ++W+ VRR DN V
Sbjct: 1369 SELDPGNSADSMLLSNIYASADRWSDAMNVRRWTADNAV 1407
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 221/403 (54%), Gaps = 26/403 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
W ++ ++ P++A L+K R + + F+F+L+ACA G HA V+
Sbjct: 448 WRAFLKAYSHGPFPLEALHLFKHA-RQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVV 506
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G+E + +V L+++Y C+ ARK+FD ++V+SW +I G+A G++ AR
Sbjct: 507 QKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARL 566
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MP +N VSW+ +I+GY + L+ EAL +M G P+ ++ + A + LG
Sbjct: 567 LFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGG 626
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLIS 294
+ G ++ Y ++ GI D +G ++ID+YAK G ++ + VFD M R++ ++TS+IS
Sbjct: 627 ILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIIS 686
Query: 295 GLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIE 330
G A H S A+ELF M+ G+ PN +SM Y I+
Sbjct: 687 GFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNID 746
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P ++H+GC++D+LGRAG L A++++ +P+E + V LL C +G+V +G+ ++
Sbjct: 747 PEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKM 806
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
+ + + G +LSN+ +++ E+ R+ ++ ++ K+
Sbjct: 807 ISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKL 849
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 187/385 (48%), Gaps = 45/385 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+ +K++ +HL VSG +A+ K+I + DL +++F ++ TTF+WNT++
Sbjct: 854 MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQ-SDLVSAHKVFKQIESPTTFLWNTLL 912
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG A+ + P A YK+ P+N TF F+L+ACA T G H VI+LG+
Sbjct: 913 RGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFL 972
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N L++LYA C + AR +F+ + +DV+SW SLI GY++ ++
Sbjct: 973 LDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRL---------- 1022
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
KE L F MQ + + +V ++AC LG
Sbjct: 1023 ---------------------KEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMAD 1061
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+ Y++ N IE+D+ LG +ID Y + G +++A VF M +++ ++I+ A
Sbjct: 1062 CMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGG 1121
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
SA ++F ++ + ++ SM Y H+ ++L + ++
Sbjct: 1122 NLVSAKKIFDQIPNKDLISWSSMICAYS---QASHFSDSLELF----------RQMQRAK 1168
Query: 361 IEPDNYVLGALLNACRVHGDVDLGK 385
++PD V+ ++L+AC G +DLGK
Sbjct: 1169 VKPDAVVIASVLSACAHLGALDLGK 1193
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 33/249 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ + LF + R W +I G+ +A L + M+ P+ T ++
Sbjct: 559 GEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVI 618
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDV 154
A ++ + +G + + + G S V N L+ LYA + + K+FD M R++
Sbjct: 619 PAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 678
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SWTS+I+G+A G L EALE F M+
Sbjct: 679 VSWTSIISGFAMHG-------------------------------LSVEALELFAEMRRA 707
Query: 215 GFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G +PN + + AC+ G ++QG + + V I+ +I IIDM + G +
Sbjct: 708 GIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCE 767
Query: 274 ACSVFDSMP 282
A + + +P
Sbjct: 768 AEQIIEGLP 776
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 244/450 (54%), Gaps = 57/450 (12%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
L R+ + R W MI G++++ +A L+ +ML S PN +TF+ +L +
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C +S +G H+ VI+ +ES+ FV
Sbjct: 588 CTSSSGFQLGRQIHSLVIKTSFESHIFV-------------------------------G 616
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+SL++ YAK+G+I AR++FD +PE++ VS +A+I+GY Q+ L +EAL+ F +Q G R
Sbjct: 617 SSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMR 676
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
N+ LTA + L ALD GR +H++V R + ++L ++IDMY+KCG + + +
Sbjct: 677 SNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRI 736
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS------------- 324
FDSMP R V ++ +++ G + H A+ELF M+ E V +S++
Sbjct: 737 FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGM 796
Query: 325 -----EIY--------GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
EI+ G EP ++HYGC+VDL GRAG +E A + +++MP EP + G+L
Sbjct: 797 EDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSL 856
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACRVH +V +G+ L+E ++ G +V+LSN+YAS +W+ V VR M++ V
Sbjct: 857 LGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVI 916
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
K PG S IE+D + F + +R++ EE+
Sbjct: 917 KEPGRSWIELDQTLHTFHASDRSHPRKEEV 946
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 143/322 (44%), Gaps = 58/322 (18%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+ +L C + + G HA +I+ +E ++ L+ LY C C+ AR++
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVL---- 535
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
D+MPE+N VSW+AMI+GY Q EAL F
Sbjct: 536 ---------------------------DEMPERNVVSWTAMISGYSQRGYASEALHLFVE 568
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M + G PN LT+C GR IH+ V + E I +G++++DMYAK G
Sbjct: 569 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 628
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ES 322
I A VFD +P RDV + T++ISG A A++LF R+Q EG+ N +
Sbjct: 629 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTA 688
Query: 323 MSEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+S + ++ G Q + L+D+ + G L ++++ MP E
Sbjct: 689 LSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVIS 747
Query: 368 LGALLNACRVHGDVDLGKETVE 389
A+L HG LG+E VE
Sbjct: 748 WNAMLVGYSKHG---LGREAVE 766
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 129/311 (41%), Gaps = 45/311 (14%)
Query: 8 QSHLTVSGTLWDPFA-VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
+SH+ V +L D +A GKI C A R+F L R +I G+A+
Sbjct: 610 ESHIFVGSSLLDMYAKAGKI---CEAR---------RVFDGLPERDVVSCTAIISGYAQL 657
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
+A L++++ R N T++ +L A + + L G H+ V+R Y +
Sbjct: 658 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 717
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N L+ +Y+ C + +R++FD R VISW +++ GY+K G A ++F M E+N V
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 777
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
+P+ + L+ C+ G D+G I +
Sbjct: 778 ------------------------------KPDSVTFLAVLSGCSHGGMEDRGLEIFYEM 807
Query: 247 --DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
++G E +I ++D++ + G +E A MP A + G Q+
Sbjct: 808 VNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVH 867
Query: 305 AIELFMRMQLE 315
E R LE
Sbjct: 868 IGEFVARRLLE 878
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 26/183 (14%)
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
KEAL M + G G LT C A+ +G+ +HA++ + E + L T
Sbjct: 461 LKEALLE---MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTR 517
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+I +Y KC C+ A V D MP R+V ++T++ISG + ++ A+ LF+ M + G PN
Sbjct: 518 LIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPN 577
Query: 321 E--------SMSEIYGIEPGVQHY---------------GCLVDLLGRAGMLEAAKKVVR 357
E S + G + G Q + L+D+ +AG + A++V
Sbjct: 578 EFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFD 637
Query: 358 EMP 360
+P
Sbjct: 638 GLP 640
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 163/515 (31%), Positives = 270/515 (52%), Gaps = 61/515 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QIKQ+Q++L ++G + K++ C+ S GDLS+ +F + Y +T WN +IRG
Sbjct: 16 QIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRG 75
Query: 63 FAEKNEPIKAFALYKQMLRSDFLP--NNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
A ++P A Y+ M S+ L + T SF L+ACA + H+Q++R G+
Sbjct: 76 TALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGF- 134
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
N DV+ T+L++ YAK G + +A+++FD+M
Sbjct: 135 ------------------------------NADVLLQTTLLDAYAKIGDLDLAQKLFDEM 164
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
P+ + SW+A+I G+ Q +A+ F M++ G RPN + GAL AC+ LGAL +G
Sbjct: 165 PQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEG 224
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLAN 298
+H Y+ + ++ + +IDMYAKCG ++ A VF++M ++ + + ++I A
Sbjct: 225 ESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAM 284
Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
H A++LF ++ G+ P+ SM++ G+EP ++
Sbjct: 285 HGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQ-RGLEPNIK 343
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYG +VDLLGRAG L+ A +V +P P+ + LL ACR +GDV++ + LVE
Sbjct: 344 HYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEM 402
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
G VLLSN+YA+ ++W+ V +VR M +V+K PG S IE+ G + +FV+G+++
Sbjct: 403 GFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQS 462
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
+ EI L I+ +K+ + D + V + G
Sbjct: 463 HSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIG 497
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 254/478 (53%), Gaps = 28/478 (5%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSF 93
+G + F + R WN+MI G+ ++ ++A ++ +MLR L P+ +T +
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLAS 284
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L ACA+ L +G H+ ++ G++ VLN L+ +Y+ C ++ AR+L + +D
Sbjct: 285 VLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 154 --VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+ +T+L++GY K G ++ A+ +FD + +++ V+W+AMI GY Q L+ EA+ F M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM 404
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
RPN + L+ + L +L G+ IH ++G + + A+I MYAK G I
Sbjct: 405 VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSI 464
Query: 272 ETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
+A FD + RD ++TS+I LA H + A+ELF M +EG+ P+
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 321 --------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
+ M ++ I P + HY C+VDL GRAG+L+ A++ + +MPIEPD
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
G+LL+ACRV+ ++DLGK E L+ ++ G + L+N+Y++ +W K+R+ M+
Sbjct: 585 TWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
D V+K G S IEV V F + + EI + + I +K + + D V
Sbjct: 645 DGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASV 702
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/424 (27%), Positives = 193/424 (45%), Gaps = 63/424 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ F L R + W TMI G+ + KA + +M+R P+ +T + +L
Sbjct: 94 GDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVL 153
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP--ARKLFDMSVNRD 153
+ A T CL G H+ +++LG V N LL++YA C DP A+ +FD V +D
Sbjct: 154 ASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCG--DPMMAKVVFDRMVVKD 211
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-Q 212
+ SW ++I + + GQ+ +A F++M E++ V+W++MI+GY Q AL+ F+ M +
Sbjct: 212 ISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLR 271
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
P+ + L+ACA L L G IH+++ G ++ I+ A+I MY++CG +E
Sbjct: 272 DSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVE 331
Query: 273 T---------------------------------ACSVFDSMPNRDVFAYTSLISGLANH 299
T A ++FDS+ +RDV A+T++I G H
Sbjct: 332 TARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQH 391
Query: 300 DQSASAIELFMRMQLEGVVPNESM--------SEIYGIEPGVQHYG-------------- 337
AI LF M E PN S + + G Q +G
Sbjct: 392 GLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVS 451
Query: 338 -CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L+ + +AG + +A + + E D +++ A HG + E E+++ L
Sbjct: 452 NALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL 511
Query: 397 --DH 398
DH
Sbjct: 512 RPDH 515
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 183/370 (49%), Gaps = 25/370 (6%)
Query: 86 PNNYTFSFILRACAD--------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137
P + S +L C + ++ F + H +VI+ G +++N L+++Y+
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
ARKLFD R SW ++++ YAK G + + + FD++P++++VSW+ MI GY
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
+ + +A+ M G P+ + L + A L+ G+ +H+++ + G+ ++ +
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSV 183
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
++++MYAKCG A VFD M +D+ ++ ++I+ Q A+ F +M +
Sbjct: 184 SNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243
Query: 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
V SM G G DL RA L+ K++R+ + PD + L ++L+AC
Sbjct: 244 VTWNSMI------SGYNQRG--YDL--RA--LDMFSKMLRDSMLSPDRFTLASVLSACAN 291
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR--KVPG 435
+ +G++ +V D G ++L+ + + + GVE RR +E + K+ G
Sbjct: 292 LEKLCIGEQIHSHIVTTGFDISG--IVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349
Query: 436 CSLIEVDGVV 445
+ + +DG +
Sbjct: 350 FTAL-LDGYI 358
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 238/465 (51%), Gaps = 55/465 (11%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F ++ + W+ MI + + KA L++ ML S LP+ T + +L AC+D
Sbjct: 188 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKN 247
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L +G + H V + G + FV L+ +Y C
Sbjct: 248 LQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCR-------------------------- 281
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
+I AR +FDKMPE++ V+W+ MI GY + E+L F+ M+ G P+ +
Sbjct: 282 -----EIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAM 336
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
V + ACA LGA+ + R I Y+ R +LD+ILGTA+IDM+AKCGC+E+A +FD M
Sbjct: 337 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 396
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------------------- 322
++V +++++I+ H Q A++LF M G++PN+
Sbjct: 397 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRF 456
Query: 323 ---MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
M E Y + V+HY C+VDLLGRAG L+ A K++ M +E D + GA L ACR H
Sbjct: 457 FSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHK 516
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
DV L ++ SL+E + G ++LLSNIYA+ +W V K R M ++K+PG + I
Sbjct: 517 DVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWI 576
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EVD +F G+ T+ +EI +L + L+ + + D N V
Sbjct: 577 EVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFV 621
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 165/325 (50%), Gaps = 54/325 (16%)
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
M+ GFA+ + I F +++++R P+NYT F++RAC D L +G + H V + G
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ FV L+ +Y C +I AR +FD
Sbjct: 61 LDLDHFVCAALVDMYVKCR-------------------------------EIEDARFLFD 89
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
KM E++ V+W+ MI GY + E+L F M+ G P+ +V + ACA LGA+ +
Sbjct: 90 KMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
R I Y+ R +LD+ILGTA+IDMYAKCGC+E+A +FD M ++V +++++I+
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209
Query: 299 HDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG-------------VQHYG 337
H Q A++LF M G++P++ + S++ ++ G + H+
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFV 269
Query: 338 C--LVDLLGRAGMLEAAKKVVREMP 360
C LVD+ G+ +E A+ + +MP
Sbjct: 270 CAALVDMYGKCREIEDARFLFDKMP 294
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 172/359 (47%), Gaps = 55/359 (15%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF +Q R W MI G+AE + ++ L+++M +P+ ++ ACA
Sbjct: 87 LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK--- 143
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
+G + A++I D++ RK F + DVI T++I+
Sbjct: 144 --LGAMHKARIID------DYI----------------QRKKFQL----DVILGTAMIDM 175
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
YAK G + AR++FD+M EKN +SWSAMI Y ++AL+ F M G P+ +
Sbjct: 176 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITL 235
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
L AC+ L L GR IH V + G++LD + A++DMY KC IE A +FD MP
Sbjct: 236 ASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPE 295
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------SMSEIYGI 329
RD+ +T +I G A + ++ LF +M+ EGVVP++ +M + I
Sbjct: 296 RDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI 355
Query: 330 EPGVQHYG---------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+ +Q ++D+ + G +E+A+++ M E + A++ A HG
Sbjct: 356 DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHG 413
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 217/354 (61%), Gaps = 24/354 (6%)
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D AR+LFD +RD++ W S+I+GYA+ G++ AR +F++MPE+N +SWS +I+GYV+
Sbjct: 123 VDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRF 182
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
EALE F M CG +P+ VGA+ ACA LGAL+QGRW+H+Y+++ + D+++
Sbjct: 183 GEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQ 242
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
TA+IDMY KCG ++ A +F+SMP + V + +I GL H AI+LF +M+ E
Sbjct: 243 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 302
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
++ M + G+EP V+HYG L+DLLGRAG ++ A+
Sbjct: 303 MDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 362
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ MP+EP + G+LL +CR H V+L + +VE L D GV+VLLSNIYA
Sbjct: 363 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 422
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
W+ V ++R+ M ++K G S+IEVDG + EFV+G ++ EEI L L+ +
Sbjct: 423 WDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTLWNL 476
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 64/306 (20%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M R+ P+ YTF +L+AC VGL+ H + +R G ++ F N L+ Y
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
RK+FD V RD++SW S++ GY G++ +A+ +FD+M +++A SW+ MI+GY ++
Sbjct: 61 CRSGRKVFDHGV-RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 119
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIIL 257
G +D+ R + + DR D++
Sbjct: 120 ----------------------------------AGGVDRARELFDQMPDR-----DLVC 140
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
++ID YA+ G ++ A +F+ MP R+V +++ +I G + A+E F RM G+
Sbjct: 141 WNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGI 200
Query: 318 VPNE--------SMSEIYGIEPG---------------VQHYGCLVDLLGRAGMLEAAKK 354
P+ + +++ +E G V L+D+ + G L+ AK
Sbjct: 201 KPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKL 260
Query: 355 VVREMP 360
+ MP
Sbjct: 261 IFESMP 266
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 9/252 (3%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R WN+MI G+A +A L+++M + + + +
Sbjct: 121 GGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYV 180
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--- 152
R L +++R G + G + A ++ R L +
Sbjct: 181 RFGEPNEALEF----FQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVL 236
Query: 153 -DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
DV+ T+LI+ Y K G++ +A+ +F+ MP+K+ V+W+ MI G +A++ FN M
Sbjct: 237 FDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQM 296
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGC 270
+ + I+ LT+C G + +G I ++++ G+E + A+ID+ + G
Sbjct: 297 ETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGR 356
Query: 271 IETACSVFDSMP 282
++ A + ++MP
Sbjct: 357 VDQARNTIETMP 368
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 17/186 (9%)
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M+ P+ L AC G +H R G++ D+ A+I Y + G
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
+ VFD RD+ ++ S+++G + A +LF M+ +M + YG
Sbjct: 61 CRSGRKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG-- 117
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
AG ++ A+++ +MP + D ++++ HG +D + E
Sbjct: 118 -------------EMAGGVDRARELFDQMP-DRDLVCWNSMIDGYARHGRMDEARVLFEE 163
Query: 391 LVERSL 396
+ ER++
Sbjct: 164 MPERNV 169
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/477 (32%), Positives = 237/477 (49%), Gaps = 57/477 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G + +F + +T WN+MI G+ + +P A ++++M+ N T
Sbjct: 322 SKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVM 381
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVN 151
L ACAD + G H KL D + +
Sbjct: 382 GALHACADLGDVEQGRFVH--------------------------------KLLDQLELG 409
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
DV SLI+ Y+K ++ IA ++F+ + K VSW+AMI GY Q EA+++F M
Sbjct: 410 SDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKM 469
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
QL +P+ +V + A A L L Q +WIH V R ++ ++ + TA++DMYAKCG +
Sbjct: 470 QLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAV 529
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
TA +FD M R V + ++I G H +A+ELF +M+ E + PNE
Sbjct: 530 HTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSAC 589
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
SM + YG+EP + HYG +VDLLGRA L A +++MPIEP V
Sbjct: 590 SHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISV 649
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
GA+L ACR+H +V+LG++ + + D G HVLL+NIYA+ W+ V +VR ME
Sbjct: 650 FGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEK 709
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++K PG S++E+ V F SG ++ ++I L + +K+ + D N V
Sbjct: 710 KGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV 766
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 185/397 (46%), Gaps = 44/397 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
MK++ Q + +G + K++ FC G L R+F ++ + +++TM
Sbjct: 90 MKELHQFIPLIIKNGLYSEHLFQTKLVSLFCK---FGSLHEAARVFQPIEDKIDELYHTM 146
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
++G+A + A + + +M P Y F+++L+ C D + L G H Q+I G+
Sbjct: 147 LKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGF 206
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S +V + T ++N YAK + A +MFD+
Sbjct: 207 AS-------------------------------NVFAMTGVVNMYAKCRLVEEAYKMFDR 235
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE++ V W+ +I+GY Q K ALE MQ G RP+ IV L A A +G+L G
Sbjct: 236 MPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIG 295
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R IH Y R G E + + TA++DMY+KCG + TA +FD M + V ++ S+I G +
Sbjct: 296 RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQN 355
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+A+E+F +M E V E+ + + C LG K++ ++
Sbjct: 356 GDPGAAMEIFQKMMDEQV-------EMTNVTVMGALHACAD--LGDVEQGRFVHKLLDQL 406
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+ D V+ +L++ VD+ E E+L ++L
Sbjct: 407 ELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTL 443
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/484 (23%), Positives = 220/484 (45%), Gaps = 96/484 (19%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ K+I L V+G + FA+ ++ + + + Y++F + R WNT+I
Sbjct: 191 LRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRL--VEEAYKMFDRMPERDLVCWNTII 248
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+A+ A L +M P++ T IL A AD L +G H +R G+E
Sbjct: 249 SGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFE 308
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S+ V L+ +Y+ C + AR +FD + V+SW S+I+GY ++G A ++F KM
Sbjct: 309 SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKM 368
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
++ QV++ + ++GAL ACA LG ++QGR
Sbjct: 369 MDE-------------QVEM------------------TNVTVMGALHACADLGDVEQGR 397
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
++H +D+ + D+ + ++I MY+KC ++ A +F+++ ++ + ++ ++I G A +
Sbjct: 398 FVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNG 457
Query: 301 QSASAIELFMRMQLEGVVPNE--------SMSE---------IYGI-------------- 329
+ AI+ F +MQL+ + P+ +++E I+G+
Sbjct: 458 RINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVAT 517
Query: 330 -----------------------EPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEP 363
E V + ++D G G+ +AA ++ +M I+P
Sbjct: 518 ALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKP 577
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESL-----VERSLDHEGVHV-LLSNIYASTEQWNG 417
+ +L+AC G V+ G + S+ +E ++DH G V LL E W+
Sbjct: 578 NEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDF 637
Query: 418 VEKV 421
++K+
Sbjct: 638 IQKM 641
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 241/471 (51%), Gaps = 36/471 (7%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G H LF + M R A + +A A+++ M+ LP+N +
Sbjct: 60 LGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVA 119
Query: 95 LRACADTSCLFV---------GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
L AC T+ L G + HA ++ G FV L+ +Y + +R+L
Sbjct: 120 LAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRL 179
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
FD R +SW ++++ Y + + A ++F MP ++ VSW+ MI GY V F EAL
Sbjct: 180 FDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEAL 239
Query: 206 EHFNYM---QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
E M C PN + L ACA G L+ G W+HA+VDRN + D L ++I
Sbjct: 240 ELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLI 299
Query: 263 DMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
DMY KCG IE A VF+ P RD++++T++I GLA H ++A A+++F MQ G+ P++
Sbjct: 300 DMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDD 359
Query: 322 SMS-----------------------EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
E Y I P ++HYGC++DLLGR G L+ A ++R
Sbjct: 360 VTLVGVLNACAHCGLVDEGLRHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRT 419
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
M ++P+ + GA LNAC+VH +V+LG+ L V+LS++YA + WN +
Sbjct: 420 MRMKPNAVIWGAFLNACKVHSNVELGEIAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSL 479
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGID 469
+ RR M + +++K PGCS IE+DG V EFV+G + EI +L ++
Sbjct: 480 ARERREMNNLQIKKTPGCSSIELDGEVHEFVAGGFQHPQHGEICTVLENVE 530
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 123/287 (42%), Gaps = 48/287 (16%)
Query: 11 LTVSGTLWDPFAVGKIIG-------FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
L +S L+D V + + S++GD Y LF+ + R WNTMI G+
Sbjct: 173 LALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGD---AYELFLAMPRRDVVSWNTMIAGY 229
Query: 64 AEKNEPIKAFALYKQMLRSD---FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ ++A L +QM+ PN T S +L ACA CL G+ HA V R
Sbjct: 230 SLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMN 289
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVN-RDVISWTSLINGYAKSGQISIARQMFDK 179
+ L+ +Y C ++ A ++F+ + RD+ SWT++I G A G+ +
Sbjct: 290 DDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAA-------- 341
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+AL+ F MQ G P+ +VG L ACA G +D+G
Sbjct: 342 -----------------------DALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEG 378
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM---PN 283
+++ I I +ID+ + G ++ A ++ +M PN
Sbjct: 379 LRHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPN 425
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 35/261 (13%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T+L++ YA G+ AR +FD+MP+ VS +AM + +AL F M G
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVL 110
Query: 218 PNHAG---------IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
P++ +L A A G+ +HA + +GI D+ + T +I +Y +
Sbjct: 111 PDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEY 170
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328
G + + +FD+MP R ++ +++ H A ELF+ M VV +M Y
Sbjct: 171 GELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGY- 229
Query: 329 IEPGVQHYGCLVDLLGR-AGMLEAAKKVVREM--PIEPDNYVLGALLNACR--------- 376
L+GR LE +++++ P+ P+ + +L AC
Sbjct: 230 ------------SLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGI 277
Query: 377 -VHGDVDLGKETVESLVERSL 396
VH VD + + ++RSL
Sbjct: 278 WVHAFVDRNRMNDDGSLDRSL 298
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L TA++ YA G A +FD MP+ + + T++ A Q+A A+ +F M +G
Sbjct: 49 LPTALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADG 108
Query: 317 VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLN 373
V+P+ + H + G A K V + I PD +V L+
Sbjct: 109 VLPDNVALAVALA---ACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIR 165
Query: 374 ACRVHGDVDLGKETVESLVERS 395
+G++ L + +++ RS
Sbjct: 166 VYGEYGELALSRRLFDAMPVRS 187
>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like isoform 1 [Cucumis sativus]
Length = 703
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/464 (34%), Positives = 233/464 (50%), Gaps = 34/464 (7%)
Query: 1 MKQIKQIQSHLTVSGTL-WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K K++ + + V T+ W+ G + G + LF + R F W M
Sbjct: 244 LKDTKRLFNEMPVRNTVSWNVMLKGYVKS-------GLVDQARELFERIPERDVFSWAIM 296
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I GF + KA LY M +SD PN +L AC + + G H+ +++ G+
Sbjct: 297 IDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGF 356
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+DF+ ++ YA C +D A + MS + S +I G+ K+G I ARQ+FD
Sbjct: 357 VCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDM 416
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPEK+ SWS MI+GY Q +L AL+ F+ M PN +V +A A LG L +G
Sbjct: 417 MPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEG 476
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--DVFAYTSLISGLA 297
RW H YV I L+ L AIIDMYAKCG I+TA VF + ++ V + ++I GLA
Sbjct: 477 RWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLA 536
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H + ++E+F +Q + N SM +G+EP +
Sbjct: 537 MHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNI 596
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVDLLGR G L A+++VR MP++ D + G LL + R HG+V++G+ E+L
Sbjct: 597 KHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLAR 656
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H VLLSN+YA W VRR ++ + + PG S
Sbjct: 657 LQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYS 700
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 197/427 (46%), Gaps = 63/427 (14%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
L + +LF + R + TMI G A+ + +A ++K M + PN T + ++
Sbjct: 142 QLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMS 201
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
AC+ ++ + HA VI+L + + LLH+Y + + ++LF+ R+ +S
Sbjct: 202 ACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVS 261
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W ++ GY KSG + AR++F+++PE++ SW+ MI+G+VQ+ ++AL ++ M+
Sbjct: 262 WNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDL 321
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-------- 268
PN IV L+AC ++++GR H+ + +NG + II YA C
Sbjct: 322 HPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYL 381
Query: 269 -----------------------GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
G I+ A +FD MP +DVF+++++ISG A ++ A
Sbjct: 382 QYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVA 441
Query: 306 IELFMRMQLEGVVPNE-SMSEIYGIEPGV---------QHYGC-------------LVDL 342
++LF M V PNE +M ++ + Y C ++D+
Sbjct: 442 LDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDM 501
Query: 343 LGRAGMLEAAKKVVREMP-----IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+ G ++ A V R++ + P N ++ L +HG +L E +L RS+
Sbjct: 502 YAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGL----AMHGHANLSLEIFSNLQRRSIK 557
Query: 398 HEGVHVL 404
+ L
Sbjct: 558 LNSITFL 564
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 13/292 (4%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L+ CA +S + G HA V++ G+ S F+LN L+++Y C + AR LFD D
Sbjct: 68 LKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDS 127
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+S +++GY K Q+ ARQ+F KMPE+ VS++ MI G Q D + EA+E F M+
Sbjct: 128 VSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSA 187
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G PN + ++AC+ +G + R +HA V + +++ T ++ MY ++
Sbjct: 188 GVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDT 247
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
+F+ MP R+ ++ ++ G A ELF R+ V M I+ VQ
Sbjct: 248 KRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIM-----IDGFVQ 302
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+ L +A +L +A +R+ + P+ ++ LL+AC ++ G++
Sbjct: 303 -----MKRLRKALLLYSA---MRKSDLHPNEVLIVDLLSACGQSVSIEEGRQ 346
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 91/229 (39%), Gaps = 59/229 (25%)
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA------C 275
+V AL CA A+ G+ IHA V + G + + ++I+MY KCG + +A C
Sbjct: 63 SVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSC 122
Query: 276 SVFDS-------------------------MPNRDVFAYTSLISGLANHDQSASAIELFM 310
SV DS MP R +YT++I GLA +D AIE+F
Sbjct: 123 SVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFK 182
Query: 311 RMQLEGVVPNESMSEIYGIEPGVQHYG---------CLVDLLGRAGM------------- 348
M+ GV PNE + + H G LV L G+
Sbjct: 183 DMRSAGVAPNE--VTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCV 240
Query: 349 ---LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
L+ K++ EMP+ + +L G VD +E E + ER
Sbjct: 241 FSSLKDTKRLFNEMPVR-NTVSWNVMLKGYVKSGLVDQARELFERIPER 288
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 247/462 (53%), Gaps = 34/462 (7%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-----DFLPNNYTFSFILRAC 98
+F L F+ ++R P++ F ++ + R+ FLP + FS + ++
Sbjct: 99 VFSSLSPPDPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLP--FAFSPLAKSA 156
Query: 99 ADTSCLFVGLICHAQVIRLG-WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
A L HA + LG ++ + FV N L+ Y C + ARK+ D V +DVISW
Sbjct: 157 AAARSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISW 216
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
TS++ Y++S + A ++F P K+ V+W+AM+ GY Q + +ALE F M G
Sbjct: 217 TSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMP 276
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
+ + GA++ACA LGA+ + WI DR+G+ ++++G+ ++DMYAKCG I+ AC V
Sbjct: 277 IDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRV 336
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPNE--------------- 321
F+ M ++V+ Y+S+I GLA+H ++ AI LF M + V PN
Sbjct: 337 FEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGM 396
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
M + YGI P HY C+VDLLGRAG++ A +V+ M +EP V GALL
Sbjct: 397 VKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALL 456
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
ACR+HG+ + K + L + + G +VLLSN AS +W+ V KVR+ M ++K
Sbjct: 457 GACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKK 516
Query: 433 VPGCSLIE-VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
P S E DG+V +F +G+ T+ M EI L + LK
Sbjct: 517 DPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTLLELRARLK 558
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 45/328 (13%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
D+ +F + W M+ G+A+ P+KA ++QM + + + + +
Sbjct: 228 DMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAIS 287
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
ACA + + R G V +GL+ +YA C +D A ++F+ ++V +
Sbjct: 288 ACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYT 347
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
++S+I G A G+ + A +F+ M + V
Sbjct: 348 YSSMIVGLASHGRANDAIALFNDMVRRADVE----------------------------- 378
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETAC 275
PNH +G LTAC+ G + +GR+ A + DR GI T ++D+ + G + A
Sbjct: 379 -PNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEAL 437
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQ 334
+ SM + H A+ R+ V + ++ +EP G+
Sbjct: 438 DLVKSMT-------------VEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIG 484
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIE 362
+Y L + L AG + KV + M I
Sbjct: 485 NYVLLSNTLASAGEWDEVSKVRKLMRIR 512
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 246/453 (54%), Gaps = 25/453 (5%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ GDL R+F + R W+ MI +++ +A L+ +M++ F PN F+
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
L A A L G+ H V ++G + F+ + L+ LY C D R +FD+ + ++
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V+ W S++ GY+ +G++ ++F+ +PEKN VSW +I GY++ + ++ LE FN + +
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G PN + L ACA + +LD+G +H + + GI+ DI +GTA+ DMYAKCG I +
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VVPNE----------- 321
+ VF+ MP ++ ++T +I GLA + ++ LF M+ V PNE
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM ++YGI+P +HY C+VDLL R+G L A++ +R +P +P+
Sbjct: 562 HCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAW 621
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
ALL+ C+ + D + + T + L + + ++ +VLLSNIYAS +W V +R+ M +
Sbjct: 622 AALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREK 681
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
++K GCS +EV V F S + ++ EI
Sbjct: 682 GLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEI 714
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 180/365 (49%), Gaps = 54/365 (14%)
Query: 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
++ W I GF +A L+ ++L S PN+ TF+ ++RAC + +G+
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
V++ G+E Y V N L+ L +D AR++FD RDV+SWT++++ Y ++G
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ AR++FD+MPE+N +SWSAMI Y Q +EAL+ F+ M GF+PN + L+A
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD---------- 279
A L AL G IH +V + GI+ D+ +G+++ID+Y KCG + VFD
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385
Query: 280 ---------------------SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+P ++ ++ ++I+G ++Q +E+F + + G
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445
Query: 319 PNESM--------SEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKV 355
PN+S + I ++ G+ +G L D+ + G + ++K+V
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV 505
Query: 356 VREMP 360
MP
Sbjct: 506 FERMP 510
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 165/394 (41%), Gaps = 88/394 (22%)
Query: 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
+P K+F Y Q S +L+ ++ + G + HA +I+ G+ S ++
Sbjct: 12 DPKKSFRAYAQTCVS-----------LLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAI 60
Query: 128 GLLHLYATC---------------------NCMDPA----------RKLFDMSVNRDVIS 156
LL LY C NCM A R LFD R+ +S
Sbjct: 61 KLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS 120
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W++LI+G K G++ + F++ P +N VSW+A I+G+V+ L EAL+ F + G
Sbjct: 121 WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV 180
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE------------------------ 252
RPN + AC LG G I V + G E
Sbjct: 181 RPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARR 240
Query: 253 -------LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
D++ TAI+D Y + G + A +FD MP R+ +++++I+ + + A
Sbjct: 241 VFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEA 300
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIE 362
++LF +M EG PN + + C + L L A + V ++ I+
Sbjct: 301 LKLFSKMVQEGFKPN------------ISCFACTLSALASLRALSAGINIHGHVTKIGID 348
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
D ++ +L++ G D G+ + ++E+++
Sbjct: 349 KDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
D+++ +I Y + G + A +FD MP R+ ++++LISGL + + ++ F R
Sbjct: 86 DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145
Query: 314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM-LEAAKKVVR--EMPIEPDNYVLGA 370
+ VV + + R G+ EA K R E + P++ +
Sbjct: 146 FQNVVS----------------WTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTS 189
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDH 398
++ AC GD LG + +V+ +H
Sbjct: 190 VVRACGELGDFGLGMSILGLVVKAGFEH 217
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 241/442 (54%), Gaps = 27/442 (6%)
Query: 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
++ T W T++ F N +A ++ +M R P+ T + CA + VG
Sbjct: 80 HKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQ 139
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
H ++++G + N ++ +YA M AR++F + V+SWT +++G +S
Sbjct: 140 GHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEG 199
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALT 228
+ R +FD+MPE+N V+W+ MI GY+ L +E+ M N+ + LT
Sbjct: 200 VRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILT 259
Query: 229 ACAFLGALDQGRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
AC+ G L GRW+HAY + EL+I++GTA++DMYAKCG I A F MP R+V
Sbjct: 260 ACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVV 319
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SM 323
++ +++SGLA H +A+++F +M E P++ ++
Sbjct: 320 SWNAMLSGLAMHGLGRAALDIFPQMFKEAK-PDDVTFTSVLSACSHSGLVDQGCFYFGNL 378
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
+YGI P V+HY C+VDLLGRAG LE A+ +VREMPI P+ VLG+LL +C +HG + L
Sbjct: 379 ESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQL 438
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
G+ ++ LV+ + H+LLSN+YA + N +R+ ++ ++KVPG S I V G
Sbjct: 439 GEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGG 498
Query: 444 VVCEFVSGERTNVLMEEIVLLL 465
V +F +G++++ E+ +L
Sbjct: 499 QVHQFSAGDKSHPRTREVYNML 520
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 132/303 (43%), Gaps = 55/303 (18%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESY--DFVLNGLLHLYATCNCMDPARKLFDM 148
+ F+LR+CA S L +G HA +I G F+ N LL YA+C C ARK+FD
Sbjct: 16 YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFD- 74
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALE 206
++P K+ V W+ ++ +V+ ++ EAL
Sbjct: 75 ------------------------------EIPHSHKDTVDWTTLMGCFVRHNVSDEALL 104
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F M+ CG +P+ +V CA LG + G H + + G+ A++DMYA
Sbjct: 105 IFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYA 164
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326
K G + A VF M + V ++T ++ G+ + + +F M V M
Sbjct: 165 KSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAG 224
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD---NYV-LGALLNACRVHGDVD 382
Y +D +G+ + + +VREM + + NYV L ++L AC GD+
Sbjct: 225 Y------------LD----SGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLM 268
Query: 383 LGK 385
+G+
Sbjct: 269 MGR 271
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 35/250 (14%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY-TFSFILR 96
+ +G +F + R W MI G+ + ++FAL ++M+ + NY T IL
Sbjct: 200 VRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILT 259
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC+ + L +G HA ++ + + ++ ++ +YA C + A K F R+V+
Sbjct: 260 ACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVV 319
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW ++++G A G + R D P+ +FKEA
Sbjct: 320 SWNAMLSGLAMHG---LGRAALDIFPQ-----------------MFKEA----------- 348
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETA 274
+P+ L+AC+ G +DQG + ++ GI + ++D+ + G +E A
Sbjct: 349 -KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEA 407
Query: 275 CSVFDSMPNR 284
+ MP R
Sbjct: 408 EILVREMPIR 417
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 231/470 (49%), Gaps = 58/470 (12%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
Q +H+ G DPF +I S+S + D + RLF + + W MI GF
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFAS--RLFDGAEDKDVVTWTAMIDGFVR 181
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD-F 124
+A + +M ++ N T +L+A + G H + G D F
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ + L+ +Y C+C D A +++FD+MP +N
Sbjct: 242 IGSSLVDMYGKCSCYDDA-------------------------------QKVFDEMPSRN 270
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+W+A+I GYVQ F + + F M PN + L+ACA +GAL +GR +H
Sbjct: 271 VVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHC 330
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y+ +N IE++ GT +ID+Y KCGC+E A VF+ + ++V+ +T++I+G A H +
Sbjct: 331 YMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARD 390
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
A +LF M V PNE SM + +E HY C+V
Sbjct: 391 AFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMV 450
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DL GR G+LE AK ++ MP+EP N V GAL +C +H D +LGK +++ H G
Sbjct: 451 DLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSG 510
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
+ LL+N+Y+ ++ W+ V +VR+ M+D +V K PG S IEV G +CEF++
Sbjct: 511 RYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIA 560
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 182/410 (44%), Gaps = 72/410 (17%)
Query: 3 QIKQIQSHLTVSGTLW---DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+KQI L S + D F + C+A+ + RL LQ + +W+++
Sbjct: 16 HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAAT--QFRYARRLLCQLQTLSIQLWDSL 73
Query: 60 IRGFA---EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC---ADTSCLFVGLICHAQ 113
I F+ N + +F Y+ M R+ +P+ +TF +L+A D++ HA
Sbjct: 74 IGHFSGGITLNRRL-SFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN----PFQFHAH 128
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+++ G +S FV N L+ Y++ D A +LFD + ++DV++WT++I+G+ ++G S
Sbjct: 129 IVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSAS-- 186
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
EA+ +F M+ G N +V L A +
Sbjct: 187 -----------------------------EAMVYFVEMKKTGVAANEMTVVSVLKAAGKV 217
Query: 234 GALDQGRWIHA-YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+ GR +H Y++ ++ D+ +G++++DMY KC C + A VFD MP+R+V +T+L
Sbjct: 218 EDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTAL 277
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYG--IEPGVQHYG------------ 337
I+G + +F M V PNE ++S + G H G
Sbjct: 278 IAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSI 337
Query: 338 --------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+DL + G LE A V + E + Y A++N HG
Sbjct: 338 EINTTAGTTLIDLYVKCGCLEEAILVFERLH-EKNVYTWTAMINGFAAHG 386
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 252/469 (53%), Gaps = 27/469 (5%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ GDL R+F + R W+ MI +++ +A L+ +M++ F PN F+
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
L A A L G+ H V ++G + F+ + L+ LY C D R +FD+ + ++
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V+ W S++ GY+ +G++ ++F+ +PEKN VSW +I GY++ + ++ LE FN + +
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G PN + L ACA + +LD+G +H + + GI+ DI +GTA+ DMYAKCG I +
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VVPNE----------- 321
+ VF+ MP ++ ++T +I GLA + ++ LF M+ V PNE
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM ++YGI+P +HY C+VDLL R+G L A++ +R +P +P+
Sbjct: 562 HCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAW 621
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
ALL+ C+ + D + + T + L + + ++ +VLLSNIYAS +W V +R+ M +
Sbjct: 622 AALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREK 681
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
++K GCS +EV V F S + ++ EI L + +K CF
Sbjct: 682 GLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTLQLLRSEMK--CF 728
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 180/365 (49%), Gaps = 54/365 (14%)
Query: 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
++ W I GF +A L+ ++L S PN+ TF+ ++RAC + +G+
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
V++ G+E Y V N L+ L +D AR++FD RDV+SWT++++ Y ++G
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ AR++FD+MPE+N +SWSAMI Y Q +EAL+ F+ M GF+PN + L+A
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD---------- 279
A L AL G IH +V + GI+ D+ +G+++ID+Y KCG + VFD
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385
Query: 280 ---------------------SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+P ++ ++ ++I+G ++Q +E+F + + G
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445
Query: 319 PNESM--------SEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKV 355
PN+S + I ++ G+ +G L D+ + G + ++K+V
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV 505
Query: 356 VREMP 360
MP
Sbjct: 506 FERMP 510
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 165/394 (41%), Gaps = 88/394 (22%)
Query: 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
+P K+F Y Q S +L+ ++ + G + HA +I+ G+ S ++
Sbjct: 12 DPKKSFRAYAQTCVS-----------LLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAI 60
Query: 128 GLLHLYATC---------------------NCMDPA----------RKLFDMSVNRDVIS 156
LL LY C NCM A R LFD R+ +S
Sbjct: 61 KLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS 120
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W++LI+G K G++ + F++ P +N VSW+A I+G+V+ L EAL+ F + G
Sbjct: 121 WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV 180
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE------------------------ 252
RPN + AC LG G I V + G E
Sbjct: 181 RPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARR 240
Query: 253 -------LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
D++ TAI+D Y + G + A +FD MP R+ +++++I+ + + A
Sbjct: 241 VFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEA 300
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIE 362
++LF +M EG PN + + C + L L A + V ++ I+
Sbjct: 301 LKLFSKMVQEGFKPN------------ISCFACTLSALASLRALSAGINIHGHVTKIGID 348
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
D ++ +L++ G D G+ + ++E+++
Sbjct: 349 KDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
D+++ +I Y + G + A +FD MP R+ ++++LISGL + + ++ F R
Sbjct: 86 DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145
Query: 314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM-LEAAKKVVR--EMPIEPDNYVLGA 370
+ VV + + R G+ EA K R E + P++ +
Sbjct: 146 FQNVV----------------SWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTS 189
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDH 398
++ AC GD LG + +V+ +H
Sbjct: 190 VVRACGELGDFGLGMSILGLVVKAGFEH 217
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 249/464 (53%), Gaps = 28/464 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+ QI +H G + + C++ + + + +F + ++N++I+
Sbjct: 24 HLPQIHAHFLRHGLHHSNQILSHFVSVCTS--LHQIPYATTIFNHTHHPNILLFNSIIKA 81
Query: 63 FAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ ++F + M + + LP+N+TF +L+A + +G HA V LG+
Sbjct: 82 HSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYR 141
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ V GLL +Y+ C M+ A K+FD ++R+V+ W +ING+ K G + I ++F +M
Sbjct: 142 HSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMG 201
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+++ VSW+ MI+ Q EA F M GF P+ A +V L CA LG +D G W
Sbjct: 202 QRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEW 261
Query: 242 IHAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH+Y D G+ +I +G +++D Y KCG +E A VF+ M ++V ++ ++ISGL +
Sbjct: 262 IHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNG 321
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ +ELF +M +GV P+ +SM+ + + P ++HY
Sbjct: 322 KGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHY 381
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGR G ++ A ++R MP+ P+ + GALL+ACR HGD ++ + + LV
Sbjct: 382 GCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSACRTHGDREVAEIAAKELVRLEP 441
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+ G +VLLSN+YA +WN VEKVR M+ ++K PG S ++
Sbjct: 442 GNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNPGQSALQ 485
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 234/465 (50%), Gaps = 56/465 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GDL+ R+F + +T W +MI G+ + A L+ +M +P+ Y +
Sbjct: 399 SKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVT 458
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
IL ACA L G I H + E+ FV N L +YA C
Sbjct: 459 SILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKC---------------- 502
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
G + A +F M +K+ +SW+ MI GY + L EAL F MQ
Sbjct: 503 ---------------GSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ 547
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+P+ + L ACA L ALD+GR IH Y RNG D + A++DMY KCG +
Sbjct: 548 RES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLV 606
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--MSEIYG-- 328
A S+FD +PN+D+ ++T +I+G H + AI F +M++ G+ P+E +S +Y
Sbjct: 607 LARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACS 666
Query: 329 --------------------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
IEP ++HY C+VDLL R G L A K ++ MPI+PD +
Sbjct: 667 HSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIW 726
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
GALL CR+H DV L ++ E + E ++ G +VLL+NIYA E+W V+K+R+ +
Sbjct: 727 GALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQR 786
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
++K PGCS IE+ G + FV+G+ + ++I LLL + +K
Sbjct: 787 GLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMK 831
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 184/373 (49%), Gaps = 49/373 (13%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
++++S + SG + D K++ GDL G +F L F+WN MI ++
Sbjct: 170 RRVRSIIESSGVMIDGILGVKLVFM--YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYS 227
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
++ L+KQML PN+YTFS IL+ A + + G H + +LG+ SY+
Sbjct: 228 GSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNT 287
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V+N SLI+ Y ++ A+++FD++ +++
Sbjct: 288 VVN-------------------------------SLISFYFVGRKVRCAQKLFDELTDRD 316
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+SW++MI+GYV+ L +E F M + G + A +V ACA +G L G+ +H+
Sbjct: 317 VISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHS 376
Query: 245 Y-VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y + ++ ++ ++DMY+KCG + +A VF+ M + V ++TS+I+G S
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436
Query: 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMP 360
AI+LF M+ GVVP ++Y + + C ++ G L++ K V +RE
Sbjct: 437 GAIKLFDEMKSRGVVP-----DVYAVTSILN--ACAIN-----GNLKSGKIVHDYIRENN 484
Query: 361 IEPDNYVLGALLN 373
+E +++V AL +
Sbjct: 485 LETNSFVSNALTD 497
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 30/273 (10%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
+LF L R WN+MI G+ + + ++ +ML + T + ACA+
Sbjct: 307 KLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L +G + H+ I+ +++R+V +L++
Sbjct: 367 TLLLGKVLHSYSIKAA------------------------------TLDREVRFNNTLLD 396
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
Y+K G ++ A ++F++M EK VSW++MI GYV+ L A++ F+ M+ G P+
Sbjct: 397 MYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYA 456
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ L ACA G L G+ +H Y+ N +E + + A+ DMYAKCG ++ A VF M
Sbjct: 457 VTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK 516
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+DV ++ ++I G + A+ LF MQ E
Sbjct: 517 KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRE 549
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 209 NYMQLCGFRPNHAGIVGA----LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
N M+L N +GA L CA ++ GR + + ++ +G+ +D ILG ++ M
Sbjct: 135 NAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFM 194
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---- 320
Y KCG ++ VFD + +F + +IS + +I LF +M G+ PN
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTF 254
Query: 321 ----ESMSEIYGIEPGVQHYGCLVDL 342
+ + + +E G Q +G + L
Sbjct: 255 SSILKCFAAVARVEEGRQVHGLICKL 280
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 156/509 (30%), Positives = 268/509 (52%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ KQ+ +H+ G +D F ++ C+ S G + + +F ++ +F +NTMI
Sbjct: 43 MEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMI 102
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG +A LY +ML P+N+T+ F+L+AC+ L G+ HA V + G E
Sbjct: 103 RGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLE 162
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV NGL IN Y K G I A +F++M
Sbjct: 163 GDVFVQNGL-------------------------------INMYGKCGAIEHASVVFEQM 191
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
EK+ SWS++I + V+++ E L M G R + +V AL+AC LG+ + G
Sbjct: 192 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFG 251
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R IH + RN EL++ + T++IDMY K G +E VF +M ++ ++YT +I+GLA H
Sbjct: 252 RCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIH 311
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ A+ +F M EG+ P++ + + I+P +QH
Sbjct: 312 GRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQH 371
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDL+GRAGML+ A +++ MPI+P++ V +LL+AC+VH ++++G+ E++ + +
Sbjct: 372 YGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLN 431
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +++L+N+YA ++W V ++R M + + + PG SL+E + V +FVS +++
Sbjct: 432 QHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQ 491
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E I ++ ++ LK + D ++V
Sbjct: 492 PQCETIYDMIQQMEWQLKFEGYTPDMSQV 520
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYA--KCGCIETACSVFDSMPNRDVFAYTSL 292
++++ + +HA++ + G+ D G+ ++ A + G +E ACS+F + F Y ++
Sbjct: 42 SMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTM 101
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHYG------- 337
I G N A+ L++ M G+ P+ ++ S + ++ GVQ +
Sbjct: 102 IRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGL 161
Query: 338 --------CLVDLLGRAGMLEAAKKVVREM 359
L+++ G+ G +E A V +M
Sbjct: 162 EGDVFVQNGLINMYGKCGAIEHASVVFEQM 191
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 155/509 (30%), Positives = 271/509 (53%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ K++ +H+ G +D F ++ C+ S G + + +F ++ +F +NTMI
Sbjct: 44 MEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMI 103
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + +A LY +ML P+N+T+ F+L+AC+ L G+ HA V G E
Sbjct: 104 RGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLE 163
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV NGL I+ Y K G I A +F++M
Sbjct: 164 VDVFVQNGL-------------------------------ISMYGKCGAIEHAGVVFEQM 192
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQG 239
EK+ SWS++I + V+++ E L M G R + +V AL+AC LG+ + G
Sbjct: 193 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLG 252
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R IH + RN EL++++ T++IDMY KCG +E VF +M +++ ++YT +I+GLA H
Sbjct: 253 RCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIH 312
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ A+ +F M EG+ P++ M + I+P +QH
Sbjct: 313 GRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQH 372
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDL+GRAGML+ A +++ MPI+P++ V +LL+AC+VH ++++G+ +++ + +
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLN 432
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +++L+N+YA ++W V ++R M + + + PG SL+E + V +FVS +++
Sbjct: 433 KHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQ 492
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E I ++ ++ LK + D ++V
Sbjct: 493 PQCETIYDMIQQMEWQLKFEGYTPDMSQV 521
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Query: 124 FVLNGLLHLYATCNCMDPARK----LFDMSVNRDVISWTSLINGYAKS--GQISIARQMF 177
F G L L C M+ +K + + + D ++L+ A S G + A +F
Sbjct: 29 FNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIF 88
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
++ E + ++ MI G V +EAL + M G P++ L AC+ L AL
Sbjct: 89 RQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALK 148
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+G IHA+V G+E+D+ + +I MY KCG IE A VF+ M + V +++S+I A
Sbjct: 149 EGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHA 208
Query: 298 NHDQSASAIELFMRMQLEG 316
+ + + L M EG
Sbjct: 209 SVEMWHECLMLLGDMSREG 227
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA--KCGCIETACS 276
N G + L C ++++ + +HA++ + G+ D G+ ++ A + G +E ACS
Sbjct: 30 NEQGWLSLLKRCK---SMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACS 86
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYG 328
+F + F Y ++I G N A+ L++ M G+ P+ ++ S +
Sbjct: 87 IFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVA 146
Query: 329 IEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
++ GVQ + L+ + G+ G +E A V +M D + + +
Sbjct: 147 LKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQM----DEKSVASWSS 202
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVH-----VLLSNIYAST 412
H V++ E + L + S EG H +L+S + A T
Sbjct: 203 IIGAHASVEMWHECLMLLGDMS--REGRHRAEESILVSALSACT 244
>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
mitochondrial-like [Vitis vinifera]
Length = 743
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 170/506 (33%), Positives = 265/506 (52%), Gaps = 66/506 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DF 84
I G+C A G++ GY LF + R W MI GFA +A L+ +M + D
Sbjct: 238 ISGYCRA---GNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDM 294
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF---VLNGLLHLYA------- 134
PN+ TF + ACA +G+ HA +I W+ D+ + L+H+Y+
Sbjct: 295 KPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDF 354
Query: 135 ---------------TCNCM----------DPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
+CN M + A+ LFD RD ISWTS+INGY GQ
Sbjct: 355 AWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQ 414
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
I+ A +F+ MP+++AV+W+ M++G+VQ +LF EA F+ M++ G P ++ L A
Sbjct: 415 IAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGA 474
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
+ LDQGR H + + E D+IL ++I MYAKCG I A S+F M +RD+ ++
Sbjct: 475 AGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISW 534
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
S+I G ++H ++ A+++F M G PN ++MS+
Sbjct: 535 NSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSD 594
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG- 384
++ I+P ++HY C+V+LLGRAG +E A++ + ++P EPD + GALL C G ++ G
Sbjct: 595 VFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGF-GMINTGV 653
Query: 385 -KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ + L+E + HV+L NI+AS Q ++R+ M VRKVPGCS I + G
Sbjct: 654 ARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKG 713
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGID 469
F+SG+R + +E++ LLFG +
Sbjct: 714 EPYVFLSGDRIHPQADEMLSLLFGTE 739
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 179/421 (42%), Gaps = 70/421 (16%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G LS R F + R W +++ G A +A L+ M + + N ++
Sbjct: 121 GRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLI 180
Query: 96 RA--CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
R+ + +F + +QV S++ ++ G YA + M+ AR LFD +R+
Sbjct: 181 RSGQLEEARRVFNEMPVKSQV------SWNVMIAG----YAEHSRMEEARVLFDGMGDRN 230
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ- 212
V++WTS+I+GY ++G + +F KMPE+N VSW+AMI G+ +KEAL F M+
Sbjct: 231 VVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKG 290
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD------------------------- 247
+PN + ACA +G G HA++
Sbjct: 291 NYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFG 350
Query: 248 ----------RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
RN + + ++I+ Y + G +E A S+FD++P RD ++TS+I+G
Sbjct: 351 FMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYF 410
Query: 298 NHDQSASAIELFMRM----------QLEGVVPNESMSE---------IYGIEPGVQHYGC 338
N Q A A LF M + G V NE +E + G+ P +
Sbjct: 411 NVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSI 470
Query: 339 LVDLLGRAGMLEAAKK---VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
L+ G L+ ++ ++ + E D + +L++ G++ ++ R
Sbjct: 471 LLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRD 530
Query: 396 L 396
L
Sbjct: 531 L 531
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 101/188 (53%), Gaps = 10/188 (5%)
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N +L Y C + A + F+ R+V+SWTSL+ G A +G+I AR++F+ MPE+N V
Sbjct: 111 NAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVV 170
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
SW++M+ G ++ +EA FN M P + + + G + R A V
Sbjct: 171 SWNSMLVGLIRSGQLEEARRVFNEM------PVKSQVSWNVMIA---GYAEHSRMEEARV 221
Query: 247 DRNGI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
+G+ + +++ T++I Y + G ++ +F MP R+V ++T++I G A + A
Sbjct: 222 LFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEA 281
Query: 306 IELFMRMQ 313
+ LF+ M+
Sbjct: 282 LLLFLEMK 289
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 142 ARKLFDMSVNRDVIS----WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
AR + D NR V+ WTSL++ ++K+G I AR +F+ MPE+N V+++AM++GYVQ
Sbjct: 60 ARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQ 119
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDII 256
+A F M N L A G + + R + + +RN + + +
Sbjct: 120 CGRLSDACRFFEEMP----ERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSM 175
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
L I + G +E A VF+ MP + ++ +I+G A H + A LF M
Sbjct: 176 LVGLI-----RSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRN 230
Query: 317 VVPNESMSEIYGIEPGVQHYGCL 339
VV SM Y VQ CL
Sbjct: 231 VVTWTSMISGYCRAGNVQEGYCL 253
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L + R + + G+ ++ T+++ ++K G I+ A ++F+ MP R+V Y +++SG
Sbjct: 57 LREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSG 116
Query: 296 LANHDQSASAIELFMRMQLEGVVPNESM-------------SEIYGIEP--GVQHYGCLV 340
+ + A F M VV S+ E++ + P V + ++
Sbjct: 117 YVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSML 176
Query: 341 DLLGRAGMLEAAKKVVREMPIE 362
L R+G LE A++V EMP++
Sbjct: 177 VGLIRSGQLEEARRVFNEMPVK 198
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 252/473 (53%), Gaps = 29/473 (6%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +GDL R F + R+ WN M +A+K P +A L+ QML P++ T+
Sbjct: 203 AKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWV 262
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESY----DFVLNGLLHLYATCNCMDPARKLFD- 147
+ +C+ + ++R+ + + FV LL ++A ++ AR +FD
Sbjct: 263 VTISSCSSIGDPTLA----DSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDE 318
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+ R+ ++W +I+ Y + G++S+AR++FD MP+++ VSW++MI GY Q ++E
Sbjct: 319 LGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIEL 378
Query: 208 FNYMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F M C +P+ I L+AC +GAL W+ V I+L I ++I MY+
Sbjct: 379 FKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYS 438
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP------- 319
KCG + A +F +M RDV ++ +LISG A + AI+L + M+ EG+ P
Sbjct: 439 KCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIG 498
Query: 320 -----------NESMSEIYGIE-PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
NE + I+ P V HY C+VDLLGRAG L+ AK +++ MP++P V
Sbjct: 499 VLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGV 558
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
G+LLNA R+H V LG+ L E + G +VLLSNIYAS +W V++VR M+
Sbjct: 559 YGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKK 618
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
++K G S +E G V +F G+R++ ++I LL +++ +K + F D
Sbjct: 619 GGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVAD 671
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 177/375 (47%), Gaps = 51/375 (13%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+++ M++ ++ + +L+K + P + + ++++ + LF HA V
Sbjct: 67 VYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLF-----HAYV 121
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFD--------------------------- 147
++LG F+ N +L +YA +D AR LF+
Sbjct: 122 LKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAV 181
Query: 148 ----MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
M R++I+WTS++ GYAK G + AR+ FD+MPE++ VSW+AM + Y Q + KE
Sbjct: 182 VLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKE 241
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
AL F+ M G P+ V +++C+ +G I +D+ I L+ + TA++D
Sbjct: 242 ALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLD 301
Query: 264 MYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
M+AK G +E A ++FD + R+ + +IS + + A ELF M VV S
Sbjct: 302 MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNS 361
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGM-LEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
M Y G + M +E K+++ M I+PD + ++L+AC G +
Sbjct: 362 MIAGYAQN-------------GESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL 408
Query: 382 DLGKETVESLVERSL 396
L ++ + E+++
Sbjct: 409 KLSYWVLDIVREKNI 423
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 23/206 (11%)
Query: 157 WTSL--INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
W SL IN + +F P +A +S M+ Y ++ + + F
Sbjct: 35 WVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSL 94
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
RP + + A G HAYV + G D + AI+DMYAK G ++ A
Sbjct: 95 NLRPQPFVYIYLIKL-----AGKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLA 149
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
++F+ M R + + S+ISG A+ LF M ++ SM Y
Sbjct: 150 RNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGY------- 202
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMP 360
+ G LE+A++ EMP
Sbjct: 203 ---------AKMGDLESARRYFDEMP 219
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 252/473 (53%), Gaps = 29/473 (6%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +GDL R F + R+ WN M +A+K P +A L+ QML P++ T+
Sbjct: 203 AKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWV 262
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESY----DFVLNGLLHLYATCNCMDPARKLFD- 147
+ +C+ + ++R+ + + FV LL ++A ++ AR +FD
Sbjct: 263 VTISSCSSIGDPTLA----DSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDE 318
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+ R+ ++W +I+ Y + G++S+AR++FD MP+++ VSW++MI GY Q ++E
Sbjct: 319 LGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIEL 378
Query: 208 FNYMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F M C +P+ I L+AC +GAL W+ V I+L I ++I MY+
Sbjct: 379 FKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYS 438
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP------- 319
KCG + A +F +M RDV ++ +LISG A + AI+L + M+ EG+ P
Sbjct: 439 KCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIG 498
Query: 320 -----------NESMSEIYGIE-PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
NE + I+ P V HY C+VDLLGRAG L+ AK +++ MP++P V
Sbjct: 499 VLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGV 558
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
G+LLNA R+H V LG+ L E + G +VLLSNIYAS +W V++VR M+
Sbjct: 559 YGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKK 618
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
++K G S +E G V +F G+R++ ++I LL +++ +K + F D
Sbjct: 619 GGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVAD 671
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 177/375 (47%), Gaps = 51/375 (13%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
+++ M++ ++ + +L+K + P + + ++++ + +F HA V
Sbjct: 67 VYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMF-----HAYV 121
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFD--------------------------- 147
++LG F+ N +L +YA +D AR LF+
Sbjct: 122 LKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAV 181
Query: 148 ----MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
M R++I+WTS++ GYAK G + AR+ FD+MPE++ VSW+AM + Y Q + KE
Sbjct: 182 VLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKE 241
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
AL F+ M G P+ V +++C+ +G I +D+ I L+ + TA++D
Sbjct: 242 ALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLD 301
Query: 264 MYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
M+AK G +E A ++FD + R+ + +IS + + A ELF M VV S
Sbjct: 302 MHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNS 361
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGM-LEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
M Y G + M +E K+++ M I+PD + ++L+AC G +
Sbjct: 362 MIAGYAQN-------------GESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL 408
Query: 382 DLGKETVESLVERSL 396
L ++ + E+++
Sbjct: 409 KLSYWVLDIVREKNI 423
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 23/206 (11%)
Query: 157 WTSL--INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
W SL IN + +F P +A +S M+ Y ++ + + F
Sbjct: 35 WVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSL 94
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
RP + + A G HAYV + G D + AI+DMYAK G ++ A
Sbjct: 95 NLRPQPFVYIYLIKL-----AGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLA 149
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
++F+ M R + + S+ISG A+ LF M ++ SM Y
Sbjct: 150 RNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGY------- 202
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMP 360
+ G LE+A++ EMP
Sbjct: 203 ---------AKMGDLESARRYFDEMP 219
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 236/454 (51%), Gaps = 36/454 (7%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFV---------G 107
M R A + +A A+++ M+ LP+N + L AC T+ L G
Sbjct: 10 TAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAAGMAAARRPG 69
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
+ HA ++ G FV L+ +Y + +R+LFD R +SW ++++ Y +
Sbjct: 70 KMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRH 129
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM---QLCGFRPNHAGIV 224
+ A ++F MP ++ VSW+ MI GY V F EALE M C PN +
Sbjct: 130 SNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMS 189
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN- 283
L ACA G L+ G W+HA+VDRN + D L ++IDMY KCG IE A VF+ P
Sbjct: 190 TVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEA 249
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS------------------- 324
RD++++T++I GLA H ++A A+++F MQ G+ P++
Sbjct: 250 RDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRH 309
Query: 325 ----EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
E Y I P ++HYGC++DLLGR G L+ A ++R M ++P+ + GA LNAC+VH +
Sbjct: 310 FYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAVIWGAFLNACKVHSN 369
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
V+LG+ L V+LS++YA + WN + + RR M + +++K PGCS IE
Sbjct: 370 VELGEIAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARERREMNNLQIKKTPGCSSIE 429
Query: 441 VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
+DG V EFV+G + EI +L ++ +
Sbjct: 430 LDGEVHEFVAGGFQHPQHGEICTVLENVEAQTHT 463
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 123/287 (42%), Gaps = 48/287 (16%)
Query: 11 LTVSGTLWDPFAVGKIIG-------FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
L +S L+D V + + S++GD Y LF+ + R WNTMI G+
Sbjct: 101 LALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGD---AYELFLAMPRRDVVSWNTMIAGY 157
Query: 64 AEKNEPIKAFALYKQMLRSD---FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ ++A L +QM+ PN T S +L ACA CL G+ HA V R
Sbjct: 158 SLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMN 217
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVN-RDVISWTSLINGYAKSGQISIARQMFDK 179
+ L+ +Y C ++ A ++F+ + RD+ SWT++I G A G+ +
Sbjct: 218 DDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAA-------- 269
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+AL+ F MQ G P+ +VG L ACA G +D+G
Sbjct: 270 -----------------------DALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEG 306
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM---PN 283
+++ I I +ID+ + G ++ A ++ +M PN
Sbjct: 307 LRHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPN 353
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 158/501 (31%), Positives = 257/501 (51%), Gaps = 58/501 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+++ + +G +P ++G + GD+S +F L + W +I G+A
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGM--YAKCGDISKARVIFDRLPEKNVVTWTLLIAGYA 225
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
++ + A L + M +++ PN TF+ IL+ C + L G H +I+ G+ +
Sbjct: 226 QQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELW 285
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V+N L+ +Y C C G + AR++F +P ++
Sbjct: 286 VVNSLITMY--CKC-----------------------------GGLEEARKLFSDLPHRD 314
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+W+AM+ GY Q+ EA+ F MQ G +P+ LT+C+ L +G+ IH
Sbjct: 315 VVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQ 374
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL-ANHDQSA 303
+ G LD+ L +A++ MYAKCG ++ A VF+ M R+V A+T++I+G A H +
Sbjct: 375 QLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCR 434
Query: 304 SAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCL 339
A+E F +M+ +G+ P++ SM YGI+P V+HY C
Sbjct: 435 EALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCF 494
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
VDLLGRAG LE A+ V+ MP P V GALL+ACRVH DV+ G+ E++++ D +
Sbjct: 495 VDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDD 554
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +V LS+IYA+ ++ EKVR+ ME +V K PG S IEVDG V F ++++ E
Sbjct: 555 GAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESE 614
Query: 460 EIVLLLFGIDKHLKSLCFFDD 480
+I + L + + +K + + D
Sbjct: 615 QIYVELGKLTEQIKEMGYVPD 635
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 137/286 (47%), Gaps = 31/286 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L+ R+F ++ R W MI F N+ ++AF Y+ M + P+ TF +L
Sbjct: 96 GSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLL 155
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A + L +G H +++ G E ++P
Sbjct: 156 NAFTNPELLQLGQKVHMEIVEAGLE------------------LEPR------------- 184
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
TSL+ YAK G IS AR +FD++PEKN V+W+ +I GY Q ALE MQ
Sbjct: 185 VGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAE 244
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN L C AL+ G+ +H Y+ ++G ++ + ++I MY KCG +E A
Sbjct: 245 VAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEAR 304
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+F +P+RDV +T++++G A AI LF RMQ +G+ P++
Sbjct: 305 KLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDK 350
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 4/212 (1%)
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARK----LFDMSVNRDVISWTSLINGYAKSGQ 169
+I G Y V GLL A ++ R+ + + + +L++ YAK G
Sbjct: 38 MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 97
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
++ AR++FD + ++N VSW+AMI +V + EA + + M+L G +P+ V L A
Sbjct: 98 LTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNA 157
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
L G+ +H + G+EL+ +GT+++ MYAKCG I A +FD +P ++V +
Sbjct: 158 FTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTW 217
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
T LI+G A Q A+EL MQ V PN+
Sbjct: 218 TLLIAGYAQQGQVDVALELLETMQQAEVAPNK 249
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%)
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
KEAL N M L G R G L CA L +L+QGR +HA + ++GI+ + L
Sbjct: 28 LKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 87
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++ MYAKCG + A VFDS+ +R++ ++T++I +++ A + + M+L G P+
Sbjct: 88 LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147
Query: 321 E 321
+
Sbjct: 148 K 148
>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Cucumis sativus]
Length = 874
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 159/464 (34%), Positives = 233/464 (50%), Gaps = 34/464 (7%)
Query: 1 MKQIKQIQSHLTVSGTL-WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K K++ + + V T+ W+ G + G + LF + R F W M
Sbjct: 415 LKDTKRLFNEMPVRNTVSWNVMLKGYV-------KSGLVDQARELFERIPERDVFSWAIM 467
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I GF + KA LY M +SD PN +L AC + + G H+ +++ G+
Sbjct: 468 IDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGF 527
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+DF+ ++ YA C +D A + MS + S +I G+ K+G I ARQ+FD
Sbjct: 528 VCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDM 587
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPEK+ SWS MI+GY Q +L AL+ F+ M PN +V +A A LG L +G
Sbjct: 588 MPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEG 647
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--DVFAYTSLISGLA 297
RW H YV I L+ L AIIDMYAKCG I+TA VF + ++ V + ++I GLA
Sbjct: 648 RWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLA 707
Query: 298 NHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGV 333
H + ++E+F +Q + N SM +G+EP +
Sbjct: 708 MHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNI 767
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGCLVDLLGR G L A+++VR MP++ D + G LL + R HG+V++G+ E+L
Sbjct: 768 KHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLAR 827
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H VLLSN+YA W VRR ++ + + PG S
Sbjct: 828 LQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYS 871
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 197/427 (46%), Gaps = 63/427 (14%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
L + +LF + R + TMI G A+ + +A ++K M + PN T + ++
Sbjct: 313 QLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMS 372
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
AC+ ++ + HA VI+L + + LLH+Y + + ++LF+ R+ +S
Sbjct: 373 ACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVS 432
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W ++ GY KSG + AR++F+++PE++ SW+ MI+G+VQ+ ++AL ++ M+
Sbjct: 433 WNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDL 492
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-------- 268
PN IV L+AC ++++GR H+ + +NG + II YA C
Sbjct: 493 HPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYL 552
Query: 269 -----------------------GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
G I+ A +FD MP +DVF+++++ISG A ++ A
Sbjct: 553 QYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVA 612
Query: 306 IELFMRMQLEGVVPNE-SMSEIYGIEPGV---------QHYGC-------------LVDL 342
++LF M V PNE +M ++ + Y C ++D+
Sbjct: 613 LDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDM 672
Query: 343 LGRAGMLEAAKKVVREMP-----IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+ G ++ A V R++ + P N ++ L +HG +L E +L RS+
Sbjct: 673 YAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGL----AMHGHANLSLEIFSNLQRRSIK 728
Query: 398 HEGVHVL 404
+ L
Sbjct: 729 LNSITFL 735
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 13/292 (4%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L+ CA +S + G HA V++ G+ S F+LN L+++Y C + AR LFD D
Sbjct: 239 LKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDS 298
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+S +++GY K Q+ ARQ+F KMPE+ VS++ MI G Q D + EA+E F M+
Sbjct: 299 VSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSA 358
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G PN + ++AC+ +G + R +HA V + +++ T ++ MY ++
Sbjct: 359 GVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDT 418
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
+F+ MP R+ ++ ++ G A ELF R+ V M I+ VQ
Sbjct: 419 KRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIM-----IDGFVQ 473
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+ L +A +L +A +R+ + P+ ++ LL+AC ++ G++
Sbjct: 474 -----MKRLRKALLLYSA---MRKSDLHPNEVLIVDLLSACGQSVSIEEGRQ 517
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 91/228 (39%), Gaps = 59/228 (25%)
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA------CS 276
+V AL CA A+ G+ IHA V + G + + ++I+MY KCG + +A CS
Sbjct: 235 VVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCS 294
Query: 277 VFDS-------------------------MPNRDVFAYTSLISGLANHDQSASAIELFMR 311
V DS MP R +YT++I GLA +D AIE+F
Sbjct: 295 VLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKD 354
Query: 312 MQLEGVVPNESMSEIYGIEPGVQHYG---------CLVDLLGRAGM-------------- 348
M+ GV PNE + + H G LV L G+
Sbjct: 355 MRSAGVAPNE--VTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVF 412
Query: 349 --LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
L+ K++ EMP+ + +L G VD +E E + ER
Sbjct: 413 SSLKDTKRLFNEMPVR-NTVSWNVMLKGYVKSGLVDQARELFERIPER 459
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 254/473 (53%), Gaps = 37/473 (7%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLI 109
TT W + I +A + M + PN+ TF +L C D + +G +
Sbjct: 35 TTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDL 94
Query: 110 CHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +LG + ++ V ++ +Y+ AR +FD +++ ++W ++I+GY +SG
Sbjct: 95 LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSG 154
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ A +MFDKMPE++ +SW+AMING+V+ +EAL F MQ+ G +P++ I+ AL
Sbjct: 155 QVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALN 214
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LGAL G W+H YV + ++ + ++ID+Y +CGC+E A VF +M R V +
Sbjct: 215 ACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVS 274
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+ S+I G A + + ++ F +MQ +G P+ + M
Sbjct: 275 WNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMK 334
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDL 383
Y I P ++HYGCLVDL RAG LE A K+V+ MP++P+ V+G+LL AC HG ++ L
Sbjct: 335 CDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVL 394
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ ++ L + ++ +V+LSN+YA+ +W G K+RR M+ ++K PG S IE+D
Sbjct: 395 AERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDD 454
Query: 444 VVCEFVSGERTNVLMEEI--VLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDC 494
+ F++G+ +V I VL L D L+ G V T G LL+
Sbjct: 455 CMHVFMAGDNAHVETTYIREVLELISSDLRLQ-------GCVVETLAGDLLNA 500
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 144/367 (39%), Gaps = 78/367 (21%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNT--------------------------- 58
IIG S G +F ++ + + WNT
Sbjct: 115 IIGMYSKR--GRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLI 172
Query: 59 ----MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
MI GF +K +A +++M S P+ L AC + L GL H V
Sbjct: 173 SWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYV 232
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+ +++ V N L+ LY C C++ AR++F R V+SW S+I G+A +G
Sbjct: 233 LSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNA---- 288
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
E+L +F MQ GF+P+ GALTAC+ +G
Sbjct: 289 ---------------------------HESLVYFRKMQEKGFKPDAVTFTGALTACSHVG 321
Query: 235 ALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSL 292
+++G R+ I I ++D+Y++ G +E A + SMP + + SL
Sbjct: 322 LVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSL 381
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
++ +NH + E M+ + V + S +Y L ++ G E A
Sbjct: 382 LAACSNHGNNIVLAERLMKHLTDLNVKSHS------------NYVILSNMYAADGKWEGA 429
Query: 353 KKVVREM 359
K+ R+M
Sbjct: 430 SKMRRKM 436
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 22/216 (10%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL- 233
Q ++ + VSW++ IN + EA + F+ M L G PNH + L+ C
Sbjct: 26 QRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFT 85
Query: 234 -GALDQGRWIHAYVDRNGIELD-IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
G+ G +H Y + G++ + +++GTAII MY+K G + A VFD M +++ + +
Sbjct: 86 SGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNT 145
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
+I G Q +A ++F +M E + + +++ + G E
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMP----------------ERDLISWTAMINGFVKKGYQEE 189
Query: 352 AKKVVREMPI---EPDNYVLGALLNACRVHGDVDLG 384
A REM I +PD + A LNAC G + G
Sbjct: 190 ALLWFREMQISGVKPDYVAIIAALNACTNLGALSFG 225
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 277/522 (53%), Gaps = 74/522 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDP----FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIW 56
M Q+KQI + L++ TL + F +I+ F S + DL++ YR+F + +F+W
Sbjct: 35 MSQLKQIHA-LSLRSTLPNHSTTLFLYSRILHF---SSLHDLNYAYRVFDQVDNPNSFMW 90
Query: 57 NTMIRGFAEKNE---PIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
N +IR A+ +A LY ML RS P+N+TF F+L+ACA LF G HA
Sbjct: 91 NILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHA 150
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
+++LG++S ++ N L+H YA+C ++ A+ +FD R ++SW
Sbjct: 151 HLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSW--------------- 195
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
+AMI+ +V F+ AL+ F Q F P+ I + ACA
Sbjct: 196 ----------------NAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAG 239
Query: 233 LGALDQGRWIHAYVDRN-GIEL---DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
L AL G W HA++ RN G+ + +++ +++DMY KCG ++ A +F+ M DV +
Sbjct: 240 LCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTS 299
Query: 289 YTSLISGLANHDQSASAIELFMRM-QLEGVVPN------------------------ESM 323
+ S+I G A H + A+E F RM ++ VPN + M
Sbjct: 300 WNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMM 359
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA-CRVHGDVD 382
Y IEP ++HYGCLVD+L RAG+++ A ++V MP++PD + +LL++ C+ + V+
Sbjct: 360 VNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVE 419
Query: 383 LGKETVESLVE-RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
L + ++E D GV+VLLS +YAS +WN V VR+ M +N + K PGCSLIEV
Sbjct: 420 LSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEV 479
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
DGV EF +G+ ++ +EI +L +++ + S + D ++
Sbjct: 480 DGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQ 521
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 224/413 (54%), Gaps = 56/413 (13%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY------------ 133
P++ + SF L +C + L V + H+ +RLG +VL+ + Y
Sbjct: 70 PDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERL 129
Query: 134 --------------------ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
A ++ AR FD R+V+SW +++ YA +G +S A
Sbjct: 130 FSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKA 189
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
R++FD MP +NA SWS+M+ G V+ + +EAL F+ M G PN + +V A++AC+ L
Sbjct: 190 RKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLL 249
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+L+ G W+HAY R + ++L TAI+DMY KCG I A VF +MP ++++++ S+I
Sbjct: 250 RSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMI 309
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
+GLA + + A+ LF +MQ+ GV PN+ M +GI
Sbjct: 310 TGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNGFGI 369
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
+P +HYG +VDLLGRAG + A V MP+EP + GAL AC++HG+V+LG+E +
Sbjct: 370 QPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHGEVELGEEIAK 429
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
L+E H ++LLSNIY ++ +W+ + VRR ++D +V K G +++ D
Sbjct: 430 KLIELEPRHGSRYILLSNIYGASNRWDDMATVRRLLKDRKVPKGTGNAMVGND 482
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 27/264 (10%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP--NNYT 90
++ GDL F + R WN M+ +A KA L+ D +P N +
Sbjct: 150 ANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKARKLF------DIMPSRNAAS 203
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD---------- 140
+S ++ ++ L +++I +G + + L+ + C+ +
Sbjct: 204 WSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNE---SALVSAVSACSLLRSLEHGVWVHA 260
Query: 141 -PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
R+L MS ++ T++++ Y K G I A ++F MP KN SW++MI G
Sbjct: 261 YAKRELQGMS----LVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNG 316
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILG 258
+AL F MQ+ G RPN +G L AC+ G +D+GRW+ + V+ GI+
Sbjct: 317 REMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEHY 376
Query: 259 TAIIDMYAKCGCIETACSVFDSMP 282
++D+ + G + A +SMP
Sbjct: 377 GLMVDLLGRAGHVREAVDFVNSMP 400
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 232/404 (57%), Gaps = 31/404 (7%)
Query: 66 KNEPI--KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+N P KA A Y QM R ++++ F+L+ACA ++ L + HA + +LG+ ++
Sbjct: 32 RNAPSLHKALAFYSQMHRQSVPHDSFSILFMLKACASSNNLSILHHLHAHITKLGFTTHV 91
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV LLH Y + AR +FD +++ ++W ++I+GY+K+G + ARQ+FD+MP +
Sbjct: 92 FVATSLLHSY-VLHSFQLARLVFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSR 150
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD--QGRW 241
+ SWSAMI Y+ ++ AL F M + G P+ L CA +G+L G+
Sbjct: 151 DLASWSAMIAAYINNRNYRGALLLFQDMIINGINPDQMAAGSILNGCAHMGSLGLLAGKS 210
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H +V +N EL++ LGT ++DMYAKCG ++ AC +F+ M R+V +T+LI GLA+H
Sbjct: 211 VHGFVVKNRWELNLELGTVLVDMYAKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGC 270
Query: 302 SASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYGC 338
A+ LF M+ EGV PNE +M E G+E +QHYGC
Sbjct: 271 CKEALVLFETMRHEGVEPNEFTFTGVLSACVHAGLVQEGRKYFNMIEECGLEIRIQHYGC 330
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER--SL 396
VDLLGR+G+LE A V++ M +EP+ V +LL+AC+ H DL + +E ++E+
Sbjct: 331 FVDLLGRSGLLEEAYGVIKSMRLEPNVIVWSSLLSACKQHKSFDLAERVIEQILEKIEPD 390
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+H GV+ L+S++Y ++W+ E + R + + VRK SLI
Sbjct: 391 NHAGVYSLVSDLYVLQDKWDDAENI-RNLLNQHVRKGRAYSLIR 433
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 47/297 (15%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GD+ +LF + R W+ MI + A L++ M+ + P+
Sbjct: 132 SKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGALLLFQDMIINGINPDQMAAG 191
Query: 93 FILRACADTSC--LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
IL CA L G H V++ WE + L+ +YA C + A ++F++
Sbjct: 192 SILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLVDMYAKCGFLKYACQIFNLMS 251
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALE 206
R+V +WT+LI G A G A +F+ M E N +++ +++ V L +E +
Sbjct: 252 ERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPNEFTFTGVLSACVHAGLVQEGRK 311
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
+FN ++ C G+E+ I +D+
Sbjct: 312 YFNMIEEC-----------------------------------GLEIRIQHYGCFVDLLG 336
Query: 267 KCGCIETACSVFDSM---PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+ G +E A V SM PN V ++SL+S H +S E + LE + P+
Sbjct: 337 RSGLLEEAYGVIKSMRLEPN--VIVWSSLLSACKQH-KSFDLAERVIEQILEKIEPD 390
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 6/175 (3%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L + ++F + R W +I G A +A L++ M PN +TF+ +L
Sbjct: 238 GFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPNEFTFTGVL 297
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSVNRDV 154
AC + G + G E + L ++ A + M + +V
Sbjct: 298 SACVHAGLVQEGRKYFNMIEECGLEIRIQHYGCFVDLLGRSGLLEEAYGVIKSMRLEPNV 357
Query: 155 ISWTSLINGYAKSGQISIARQMFDKM-----PEKNAVSWSAMINGYVQVDLFKEA 204
I W+SL++ + +A ++ +++ P+ +A +S + + YV D + +A
Sbjct: 358 IVWSSLLSACKQHKSFDLAERVIEQILEKIEPDNHAGVYSLVSDLYVLQDKWDDA 412
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 25/449 (5%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+N MI G+ + +A + ++M+ S + +T+ ++RACA L +G HA V+
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
R S+ F N L+ LY C D AR +F+ +D++SW +L++GY SG I A+
Sbjct: 314 RREDFSFHFD-NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F +M EKN +SW MI+G + +E L+ F+ M+ GF P GA+ +CA LGA
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
G+ HA + + G + + G A+I MYAKCG +E A VF +MP D ++ +LI+
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
L H A A++++ M +G+ P+ +SM +Y I P
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPP 552
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
G HY L+DLL R+G A+ V+ +P +P + ALL+ CRVHG+++LG + L
Sbjct: 553 GADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKL 612
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+H+G ++LLSN++A+T QW V +VR+ M D V+K CS IE++ V F+
Sbjct: 613 FGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVD 672
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
+ ++ E + + L + K ++ L + D
Sbjct: 673 DTSHPEAEAVYIYLQDLGKEMRRLGYVPD 701
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 186/390 (47%), Gaps = 45/390 (11%)
Query: 26 IIGFCSASDIGDLSHGY--RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD 83
+ G+C++ DI L+ G + VC+ R T ++N MI GF+ N+ A L+ +M
Sbjct: 87 VSGYCASGDI-TLARGVFEKAPVCM--RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143
Query: 84 FLPNNYTFSFILRACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC-- 136
F P+N+TF+ +L A + C+ HA ++ G V N L+ +Y+ C
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQF----HAAALKSGAGYITSVSNALVSVYSKCAS 199
Query: 137 --NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMIN 193
+ + ARK+FD + +D SWT+++ GY K+G + ++ + M + V+++AMI+
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMIS 259
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
GYV ++EALE M G + + ACA G L G+ +HAYV R +
Sbjct: 260 GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DF 318
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+++ +Y KCG + A ++F+ MP +D+ ++ +L+SG + A +F M+
Sbjct: 319 SFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK 378
Query: 314 LEGVVPNESMSEIYGI------EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
+ ++ M I G+ E G++ + C + R G EP +Y
Sbjct: 379 EKNIL--SWMIMISGLAENGFGEEGLKLFSC----MKREG-------------FEPCDYA 419
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLD 397
+ +C V G G++ L++ D
Sbjct: 420 FSGAIKSCAVLGAYCNGQQYHAQLLKIGFD 449
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 151/321 (47%), Gaps = 27/321 (8%)
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
+ N Y + L + L + H +I G++ +LN L+ +Y + ++ AR+
Sbjct: 11 IANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQ 70
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFK 202
LFD D I+ T++++GY SG I++AR +F+K P ++ V ++AMI G+ +
Sbjct: 71 LFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGY 130
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI--HAYVDRNGIELDIILGTA 260
A+ F M+ GF+P++ L A + A D+ + + HA ++G + A
Sbjct: 131 SAINLFCKMKHEGFKPDNFTFASVLAGLALV-ADDEKQCVQFHAAALKSGAGYITSVSNA 189
Query: 261 IIDMYAKCGC----IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
++ +Y+KC + +A VFD + +D ++T++++G + EL LEG
Sbjct: 190 LVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEEL-----LEG 244
Query: 317 VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLN 373
+ N + Y ++ G + A ++VR M IE D + +++
Sbjct: 245 MDDNMKLVA----------YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIR 294
Query: 374 ACRVHGDVDLGKETVESLVER 394
AC G + LGK+ ++ R
Sbjct: 295 ACATAGLLQLGKQVHAYVLRR 315
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 121/277 (43%), Gaps = 42/277 (15%)
Query: 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN 87
G+ S+ IG+ +F ++ + W MI G AE + L+ M R F P
Sbjct: 360 GYVSSGHIGEAK---LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPC 416
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
+Y FS +++CA G HAQ++++G++S N L+ +YA C ++ AR++F
Sbjct: 417 DYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR 476
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
D +SW +LI + G +G VD+++E L+
Sbjct: 477 TMPCLDSVSWNALIAALGQHG------------------------HGAEAVDVYEEMLKK 512
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG----TAIID 263
G RP+ ++ LTAC+ G +DQGR Y D I G +ID
Sbjct: 513 -------GIRPDRITLLTVLTACSHAGLVDQGR---KYFDSMETVYRIPPGADHYARLID 562
Query: 264 MYAKCGCIETACSVFDSMPNRDVFA-YTSLISGLANH 299
+ + G A SV +S+P + + +L+SG H
Sbjct: 563 LLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVH 599
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 241/453 (53%), Gaps = 28/453 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLI 109
T W + I + +A + M + PN+ TF +L AC + + +G +
Sbjct: 20 TIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYL 79
Query: 110 CHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +LG E S+ V +L +Y+ + AR +FD +++ ++W ++I+GY ++G
Sbjct: 80 LHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNG 139
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ A +FDKMP+++ +SW+AMI G+V+ +EAL F MQ+ G P++ I+ A+
Sbjct: 140 QVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVA 199
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LGAL G W+H YV ++ + ++ID+Y +CGC+E A VFD M R V +
Sbjct: 200 ACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVS 259
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+ S+I G A + + ++ F +MQ EG P+ + M
Sbjct: 260 WNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMK 319
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD-VDL 383
Y I P ++HYGCLVDL RAG LE A VV MP++P+ V+G+LL ACR HG+ L
Sbjct: 320 HDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLLAACRNHGNHTIL 379
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ ++ + + + +V+LSN+YA+ +W G K+RR M+ ++K PG S IE+D
Sbjct: 380 AERLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDD 439
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLC 476
F++G+ +V I +L I L+ C
Sbjct: 440 CTHVFMAGDSAHVETAYIREVLELISSDLRLQC 472
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 138/326 (42%), Gaps = 45/326 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +F + R W MI GF +K +A A +++M S P+ +
Sbjct: 139 GQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAV 198
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H V+ + + V N L+ LY C C++ AR++FD R V+
Sbjct: 199 AACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 258
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G + E+L +F MQ G
Sbjct: 259 SWNSVIVGFAANGNAN-------------------------------ESLVYFRKMQREG 287
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F P+ GALTAC+ +G +++G ++ I I ++D+Y++ G +E A
Sbjct: 288 FTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDA 347
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
V +SMP + + SL++ NH E M+ + V + S
Sbjct: 348 FIVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKYITDLDVKSHS----------- 396
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A K+ R+M
Sbjct: 397 -NYVILSNMYAADGKWEGASKMRRKM 421
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 34/180 (18%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL- 233
Q ++ + VSW++ I + EA+ F+ M+L G PNH + L+AC
Sbjct: 11 QKLNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFP 70
Query: 234 -GALDQGRWIHAYVDRNGIELD-IILGTAIIDMYAKC----------------------- 268
G+ G +H Y + G+E +++GTAI+ MY+K
Sbjct: 71 SGSEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNT 130
Query: 269 --------GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
G ++ A VFD MP+RD+ ++T++I+G A+ F MQ+ GV P+
Sbjct: 131 MIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPD 190
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 155/450 (34%), Positives = 250/450 (55%), Gaps = 57/450 (12%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGL 108
R W MI G+ ++ + ++ +L++QML S + PN T +L AC+
Sbjct: 189 RNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACST-------- 240
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
+C+ +V R L ++ N + + I T+LI+ Y+K G
Sbjct: 241 LCNYEVGRF------------LSVFIDVN-----------KIPLNTILVTALIDMYSKCG 277
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
+ A ++FD + KN SW+A+I G VQ L +EA++ + +M+ +PN +V L+
Sbjct: 278 DVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLS 337
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA LGAL+ GR +H Y+ RNG++L++IL TA++DMYAKCG I+ AC +F +DV
Sbjct: 338 ACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVAL 397
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMS 324
+ ++I GLA H ++ +F +M GV PN+ SM+
Sbjct: 398 WNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMA 457
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ +G+ P ++HY C+VDLLGRAG L+ A ++V+ M I PD+ + GALL+ACR+H +++L
Sbjct: 458 DKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELA 517
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ E+++ + G +LLSNIYAS+ +W V +VRR +++ ++K GCS +EVDGV
Sbjct: 518 DKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGV 577
Query: 445 VCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
V FV + T++ EI + HLK+
Sbjct: 578 VHRFVVEDTTHLKSGEIYGAYEILVNHLKA 607
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 179/326 (54%), Gaps = 13/326 (3%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR--TTFIWNT 58
+ QI QI + + G + K+I S Y FV Q T F WN+
Sbjct: 12 LTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSID--------YARFVLDQTPSPTDFSWNS 63
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+IR + P + LY +MLRS P+N+TF F+L+AC+ + G H V+RLG
Sbjct: 64 LIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLG 123
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ S FV N L+ +Y C +D AR +D RD +SW S+I+GY + GQ+ AR +F+
Sbjct: 124 FGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFE 183
Query: 179 KMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG--FRPNHAGIVGALTACAFLGA 235
+MP +N V W+AMINGY + F E L F M + +PN A +V L+AC+ L
Sbjct: 184 EMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCN 243
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
+ GR++ ++D N I L+ IL TA+IDMY+KCG +E A +FD + +++ ++ ++I+G
Sbjct: 244 YEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITG 303
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE 321
AI+L+ M+ + V PNE
Sbjct: 304 CVQGGLLEEAIDLYRHMKAQSVKPNE 329
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 32/250 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GD+ +R+F + + WN +I G + +A LY+ M PN T
Sbjct: 274 SKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLV 333
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L ACA L +G H + R G + + L+ +YA C +D A +F + +
Sbjct: 334 NVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEK 393
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV W ++I G A G +++L F+ M
Sbjct: 394 DVALWNAMILGLAYHGD-------------------------------GRDSLAVFSQMV 422
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G +PN +G L+AC G +++GR + D++G+ + ++D+ + G +
Sbjct: 423 RAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHL 482
Query: 272 ETACSVFDSM 281
+ A + +M
Sbjct: 483 KEAYELVQNM 492
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 264/493 (53%), Gaps = 35/493 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+ +H V+G ++ F S + L + RLF F+++ M+
Sbjct: 23 LAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLR-LSCLPYARRLFDATPSPNVFLYSAML 81
Query: 61 RGFAE-----KNEPIKAFALYKQMLRSDF-LPNNYTFSFILRA-CADTSCLFVGLICHAQ 113
+A + + AL+ +MLR PN + + +LRA CA L + CHA
Sbjct: 82 SAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCHA- 140
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+ G+ +DF+ LL Y+ M ARKLFD +R+V+SWT+L++GYA++G++ A
Sbjct: 141 -CKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDA 199
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+F++MP+++ +W+A+I G Q LF EA+ F M GFRPN + L+AC L
Sbjct: 200 IVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHL 259
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G L G+ IH Y R+ + + +IDMY KCG + A +FD+ +R + + SLI
Sbjct: 260 GMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLI 319
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGI 329
+ LA H S SAI +F M+ EGV P+E M + +GI
Sbjct: 320 NCLALHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGI 379
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EP ++HYGC+VDLL RAG + A + +M ++PD + G+LLNACR+H ++L + +
Sbjct: 380 EPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIR 439
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM-EDNEVRKVPGCSLIEVDGVVCEF 448
+L++ + + V+L+N+Y+ W V KVR+ M ED +K+PGCS IEVD F
Sbjct: 440 NLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRF 499
Query: 449 VSGERTNVLMEEI 461
SG+ + E+I
Sbjct: 500 YSGDDGHPESEDI 512
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 168/465 (36%), Positives = 254/465 (54%), Gaps = 43/465 (9%)
Query: 62 GFAEKNEPIK-AFALYKQMLRSDFLPNNYTFSFILRACADT----SCLFVGLIC------ 110
A + P A AL+ + +R+ LP YTFS +L + A S +C
Sbjct: 42 ALARRGAPAAVALALFSR-IRAATLPTPYTFSLLLASLAAASSSRSPTPSAAVCDRLAAA 100
Query: 111 ---HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS--VNRDVISWTSLINGYA 165
HAQ ++ G ++ V N LL LY + AR++FD S DV+SW ++++GY
Sbjct: 101 GLAHAQALKCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYG 160
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
K G + AR++F +MPE+ VSWSAMI+ V+ F EAL F+ M GF+P+ +V
Sbjct: 161 KCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVS 220
Query: 226 ALTACAFLGALDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
L CA LGAL++GRW+H ++ G +++L TA++DMY KCGC+ A VFD +
Sbjct: 221 VLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQ 280
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI---------------- 326
+ DV + ++I GLA + A+ELF RM +G VPNES +
Sbjct: 281 SHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGED 340
Query: 327 -------YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+GIEP +HYGCL DLLGRAG+LE A+ V+ +MP+EP GAL+++C +H
Sbjct: 341 VFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHN 400
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+V +G+ + L+E D G +V L N+YA W + +R+ ME+ +K G S I
Sbjct: 401 NVGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFI 460
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E +G+V EF SG+ + I LL +++ L+ + + D ++V
Sbjct: 461 EWNGLVHEFRSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDTSQV 505
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL +FV + R W+ MI E +A ++ QM + F P+ +L
Sbjct: 163 GDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVL 222
Query: 96 RACADTSCLFVGLICHA--QVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNR 152
+ CA L G H + RLG + +L L+ +Y C CM+ A +FD +
Sbjct: 223 KTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSH 282
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV+ W ++I G A +G A ++F +M +K
Sbjct: 283 DVVLWNAMIGGLAMNGHGKRALELFRRMLDK----------------------------- 313
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
GF PN + V AL AC G +D+G + + +GIE + D+ + G +E
Sbjct: 314 --GFVPNESTFVVALCACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLADLLGRAGLLE 371
Query: 273 TACSVFDSMP 282
A V MP
Sbjct: 372 EAEGVLLDMP 381
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 4/173 (2%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ + +F +Q +WN MI G A +A L+++ML F+PN TF L
Sbjct: 267 GCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVAL 326
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK-LFDMSVNRDV 154
AC T + G + G E L L ++ A L DM +
Sbjct: 327 CACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHA 386
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEA 204
W +L++ + + ++ K+ E + + A+ N Y L+++A
Sbjct: 387 SQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDA 439
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 250/463 (53%), Gaps = 30/463 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLI 109
R WN+MI G++++ ++A A++ +ML L P+N+T + IL ACA+ L +G
Sbjct: 237 RDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD--MSVNRDVISWTSLINGYAKS 167
HA ++R E+ V N L+ +YA ++ AR + + + N ++I++TSL++GY K
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKL 356
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G + AR++F+K+ +++ V+W+AMI GYVQ L+ +ALE F M G PN + L
Sbjct: 357 GNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAML 416
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD 285
+ + L L+ G+ IHA + G + A+I MYAK G I A VFD +PN ++
Sbjct: 417 SVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKE 475
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------ 321
+ ++TS+I LA H AI LF RM G+ P+
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
M+E++ IEP + HY C++DL GRAG+L+ A + MPIEPDN G+LL +C++H +
Sbjct: 536 MMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNA 595
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
DL K E L+ + G ++ L+N+Y++ +W + R+ M+D VRK G S I +
Sbjct: 596 DLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHI 655
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V F + + +EI L+ I + +K + F D V
Sbjct: 656 KNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESV 698
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 206/426 (48%), Gaps = 52/426 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN---------------EPI------- 70
+ G L + +F + ++TF WNT+I G+A++ +P+
Sbjct: 56 AKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIV 115
Query: 71 ---------KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
A ++ +M+ P+ +T S +L +CA L +G H+ V++LG S
Sbjct: 116 GYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGS 175
Query: 122 YDFVLNGLLHLYATCNCMDP--ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
V LL++YA C DP A+ +FD +++ +W +LI+ Y +SGQ +A F+K
Sbjct: 176 CVPVATSLLNMYAKCG--DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTACAFLGALDQ 238
MP+++ VSW++MI+GY Q EAL F+ M +P++ + L+ACA L L+
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD--SMPNRDVFAYTSLISGL 296
G+ IHAY+ R E +G A+I MYAK G +E A + + N ++ A+TSL+ G
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
A E+F +++ VV +M Y ++ G+ + LE + +V
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGY-VQNGLWN-----------DALELFRLMV 401
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER-SLDHEGVHVLLSNIYASTEQW 415
E P EP++Y L A+L+ ++ GK+ S ++ V L +YA T
Sbjct: 402 NEGP-EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI 460
Query: 416 NGVEKV 421
N ++V
Sbjct: 461 NVAKRV 466
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 164/341 (48%), Gaps = 16/341 (4%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
F+ IL+ F G H Q+I+ G +++N L+ YA + A +FD
Sbjct: 13 FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ SW +LI+GYAK G ++R++ +MP+ + VSW+A+I GY Q LF A+ F
Sbjct: 73 LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M P+ + L++CA LD GR IH++V + G+ + + T++++MYAKCG
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
A VFD M +++ + +LIS Q A F +M +V SM Y
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGY--- 249
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
Q Y L K++ E ++PDN+ L ++L+AC +++GK+
Sbjct: 250 -SQQGYNL--------EALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300
Query: 391 LVERSLDHEG-VHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
++ + G V L ++YA + GVE R +E N
Sbjct: 301 ILRAETETSGAVGNALISMYAKS---GGVEIARLIVEHNRT 338
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 129/284 (45%), Gaps = 38/284 (13%)
Query: 26 IIGFCSASD----IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
II F S D +G++ +F L+ R W MI G+ + A L++ M+
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402
Query: 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141
PN+YT + +L + + L G HA I+ G S V N L+ +YA ++
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462
Query: 142 ARKLFDM-SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
A+++FD+ + ++++SWTS+I A+ G L
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHG-------------------------------L 491
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGT 259
KEA+ F M G +P+H VG L+AC +G ++QGR + + + + IE +
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYA 551
Query: 260 AIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQS 302
+ID+Y + G ++ A +SMP D A+ SL++ H +
Sbjct: 552 CMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNA 595
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 160/440 (36%), Positives = 243/440 (55%), Gaps = 31/440 (7%)
Query: 56 WNTMI-RGFAEKNEPIKAFALYKQMLRSDFLP--NNYTFSFILRACADTSCLFVG---LI 109
W I R E + P A AL ML S P N+ T +L ACA + +
Sbjct: 34 WTAAIARPAREGDLPATAAAL-SAMLSSPAAPAPNDVTLLTVLSACAGAPSSPLARPLAL 92
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
+ + S+ + L Y A +LF R ++++ ++I G ++G
Sbjct: 93 SLHALAAKLFPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMRNGL 152
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
++ AR++FD MPE + VSW+A+I+G V+ EA++ F+ M L G P++ +V A++A
Sbjct: 153 VAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISA 212
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA +GAL G W+H V R +E +I + ++IDMYA+CG +E A VFDSM NR V ++
Sbjct: 213 CAEVGALGLGMWVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQVFDSMRNRTVVSW 272
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
S+I G A + + AIE F M+ +G P+ ++M
Sbjct: 273 NSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHAGLTDEGLRYYKAMRA 332
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+GI ++HYGC+VDLLGRAG L A VV MP+ P+ VLGALL CR+HGDVD+ +
Sbjct: 333 EHGITARMEHYGCVVDLLGRAGRLGEAMSVVATMPMRPNEVVLGALLAGCRMHGDVDMAE 392
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ ++ L+E+ + +VLLSNIYA+T +W+G KVR M+ V+K PG S +E+DG V
Sbjct: 393 QLMQHLLEQDPGGDSNYVLLSNIYAATGKWDGAGKVRGLMKARGVKKRPGRSAVEIDGDV 452
Query: 446 CEFVSGERTNVLMEEIVLLL 465
EFV G+R++ +E+ +L
Sbjct: 453 HEFVCGDRSHPQADEVFDML 472
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ RT WN+MI GFA A ++ M R F P+ TF+ +L
Sbjct: 252 GQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVL 311
Query: 96 RACADTSCLFVGL 108
AC+ GL
Sbjct: 312 TACSHAGLTDEGL 324
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 249/476 (52%), Gaps = 50/476 (10%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G ++ +F + R WN++I + + +A ++ +M+ S P+ T +
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVN 151
++ ACA L GL HA+V++ D VL N L+ +YA C+ ++ AR++FD
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
R+V+S TS+++GYA++ + AR MF KM ++N VSW+A+I GY Q +EAL F +
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ P H Y N ++ DI +G ++IDMY KCG I
Sbjct: 373 KRESIWPTH------------------------YTFGNLLKSDIFVGNSLIDMYMKCGSI 408
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
E VF+ M RD ++ ++I G A + A A+++F +M + G P+
Sbjct: 409 EDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCAC 468
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
SM E +G+ P HY C+VDLLGRAG L AK ++ MP+ PD V
Sbjct: 469 SHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVV 527
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
G+LL AC+VHG++++GK E L+E + G +VLLSN+YA +W V +VR+ M
Sbjct: 528 WGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQ 587
Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
V K PGCS IEV+ V F+ ++++ ++I +L + + +K + + D N+
Sbjct: 588 QGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDAND 643
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 163/308 (52%), Gaps = 24/308 (7%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
++R +LPN+ F+ +L +C + + HA+++ + F+ N L+ +Y C+C
Sbjct: 6 LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D ARKLFD R+ +W SLI+ KSG + A ++F MPE + SW++M++G+ Q
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
D F+E+LE+F M F N AL+ACA L L+ G +HA V ++ D+ +G
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+A+IDMY+KCG + A VF M R++ + SLI+ + ++ A+E+F+RM G+
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245
Query: 319 PNE--------SMSEIYGIEPGVQHYG----------------CLVDLLGRAGMLEAAKK 354
P+E + + + ++ G+Q + LVD+ + + A++
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305
Query: 355 VVREMPIE 362
V M I
Sbjct: 306 VFDRMSIR 313
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 169/387 (43%), Gaps = 56/387 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L RLF + WN+M+ GFA+ + ++ + +M R DFL N Y+F L
Sbjct: 95 GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L +G HA V + + + ++ + L+ +Y+ C + A ++F + R+++
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLV 214
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W SLI Y ++G S EALE F M G
Sbjct: 215 TWNSLITCYEQNGPAS-------------------------------EALEVFVRMMDSG 243
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETA 274
P+ + ++ACA L AL +G IHA V + N D++LG A++DMYAKC + A
Sbjct: 244 LEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
VFD M R+V + TS++SG A +A +F +M VV
Sbjct: 304 RRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVS--------------- 348
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHGDVDLGKETVESL 391
+ L+ + G E A ++ R + E P +Y G LL + D+ +G ++
Sbjct: 349 -WNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS-----DIFVGNSLIDMY 402
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGV 418
++ +G V WN +
Sbjct: 403 MKCGSIEDGSRVFEKMKERDCVSWNAI 429
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 264/493 (53%), Gaps = 35/493 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+ +H V+G ++ F S + L + RLF F+++ M+
Sbjct: 241 LAHLKQLHAHAVVTGRAAAQTTTFHLLRFASLR-LSCLPYARRLFDATPSPNVFLYSAML 299
Query: 61 RGFAE-----KNEPIKAFALYKQMLRSDF-LPNNYTFSFILRA-CADTSCLFVGLICHAQ 113
+A + + AL+ +MLR PN + + +LRA CA L + CHA
Sbjct: 300 SAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSIHCHA- 358
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+ G+ +DF+ LL Y+ M ARKLFD +R+V+SWT+L++GYA++G++ A
Sbjct: 359 -CKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDA 417
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+F++MP+++ +W+A+I G Q LF EA+ F M GFRPN + L+AC L
Sbjct: 418 IVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHL 477
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G L G+ IH Y R+ + + +IDMY KCG + A +FD+ +R + + SLI
Sbjct: 478 GMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLI 537
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGI 329
+ LA H S SAI +F M+ EGV P+E M + +GI
Sbjct: 538 NCLALHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGI 597
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EP ++HYGC+VDLL RAG + A + +M ++PD + G+LLNACR+H ++L + +
Sbjct: 598 EPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRHLELAEHAIR 657
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM-EDNEVRKVPGCSLIEVDGVVCEF 448
+L++ + + V+L+N+Y+ W V KVR+ M ED +K+PGCS IEVD F
Sbjct: 658 NLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWIEVDRKTRRF 717
Query: 449 VSGERTNVLMEEI 461
SG+ + E+I
Sbjct: 718 YSGDDGHPESEDI 730
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 246/453 (54%), Gaps = 25/453 (5%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ GDL R+F + R W+ MI +++ +A L+ +M++ F PN F+
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
L A A L G+ H V ++G + F+ + L+ LY C D R +FD+ + ++
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V+ W S++ GY+ +G++ ++F+ +PEKN SW +J GY++ + ++ LE FN + +
Sbjct: 382 VVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLV 441
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G PN + L ACA + +LD+G +H + + GI+ DI +GTA+ DMYAKCG I +
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VVPNE----------- 321
+ VF+ MP ++ ++T +I GLA + ++ LF M+ V PNE
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM ++YGI+P +HY C+VDLL R+G L A++ +R +P +P+
Sbjct: 562 HCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAW 621
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
ALL+ C+ + D + + T + L + + ++ +VLLSNIYAS +W V +R+ M +
Sbjct: 622 AALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREK 681
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
++K GCS +EV V F S + ++ +EI
Sbjct: 682 GLKKSGGCSWVEVRNQVHSFYSEDGSHSQSDEI 714
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 180/365 (49%), Gaps = 54/365 (14%)
Query: 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
++ W I GF +A L+ ++L S PN+ TF+ ++RAC + +G+
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
V++ G+E Y V N L+ L +D AR++FD RDV+SWT++++ Y ++G
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ AR++FD+MPE+N +SWSAMI Y Q +EAL+ F+ M GF+PN + L+A
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD---------- 279
A L AL G IH +V + GI+ D+ +G+++ID+Y KCG + VFD
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385
Query: 280 ---------------------SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+P ++ ++ ++J+G ++Q +E+F + + G
Sbjct: 386 NSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQT 445
Query: 319 PNESM--------SEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKV 355
PN+S + I ++ G+ +G L D+ + G + ++K+V
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV 505
Query: 356 VREMP 360
MP
Sbjct: 506 FERMP 510
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 165/394 (41%), Gaps = 88/394 (22%)
Query: 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127
+P K+F Y Q S +L+ ++ + G + HA +I+ G+ S ++
Sbjct: 12 DPKKSFRAYAQTCVS-----------LLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAI 60
Query: 128 GLLHLYATC---------------------NCMDPA----------RKLFDMSVNRDVIS 156
LL LY C NCM A R LFD R+ +S
Sbjct: 61 KLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS 120
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W++LI+G K G++ + F++ P +N VSW+A I+G+V+ L EAL+ F + G
Sbjct: 121 WSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGV 180
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE------------------------ 252
RPN + AC LG G I V + G E
Sbjct: 181 RPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARR 240
Query: 253 -------LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
D++ TAI+D Y + G + A +FD MP R+ +++++I+ + + A
Sbjct: 241 VFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEA 300
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIE 362
++LF +M EG PN + + C + L L A + V ++ I+
Sbjct: 301 LKLFSKMVQEGFKPN------------ISCFACTLSALASLRALSAGINIHGHVTKIGID 348
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
D ++ +L++ G D G+ + ++E+++
Sbjct: 349 KDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
D+++ +I Y + G + A +FD MP R+ ++++LISGL + + ++ F R
Sbjct: 86 DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145
Query: 314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM-LEAAKKVVR--EMPIEPDNYVLGA 370
+ VV + + R G+ EA K R E + P++ +
Sbjct: 146 FQNVVS----------------WTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTS 189
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDH 398
++ AC GD LG + +V+ +H
Sbjct: 190 VVRACGELGDFGLGMSILGLVVKAGFEH 217
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 249/466 (53%), Gaps = 48/466 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIK-AFALYKQMLRSDFLPNNYTFS-F 93
GDL+ R+F + +TT WN+M+ G++ + IK A L+ ++ D N + +
Sbjct: 19 GDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACY 78
Query: 94 ILRACADTSCLFV---------------------GLICHAQVIRLGWESYDFV-LNGLLH 131
+ A +++ LF G++ A+ + L + V N ++
Sbjct: 79 LHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMIS 138
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
Y +D A++LF+++ R V++WT++I G+ K G+I +A + F++MP KN V+W+AM
Sbjct: 139 GYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAM 198
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I GY++ + L+ F M GFRPN + + L C+ L AL G+ +H + ++ +
Sbjct: 199 IAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPV 258
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+I GT+++ MY KCG +E A +F MP +DV + ++ISG A H A+ LF +
Sbjct: 259 SWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDK 318
Query: 312 MQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ EG+ P+ SM YG+E HY C+VDLLGR G
Sbjct: 319 MRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGG 378
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
L A ++++MP +P + + G LL ACR+H +++L + ++L+ + +V L+N
Sbjct: 379 KLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLAN 438
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+YA+ +W+ V VRR M+DN+V K PG S IEV VV EF SG+R
Sbjct: 439 VYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDR 484
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 115/321 (35%), Gaps = 99/321 (30%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNE----------------- 68
I GF S G + LF+ + R + WN MI G+ E +
Sbjct: 106 ISGF---SQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVV 162
Query: 69 -------------------------PIKAFALYKQML--------------------RSD 83
P+K + M+ S
Sbjct: 163 AWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESG 222
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPA 142
F PN + S +L C++ S L +G H Q+I S++ LL +Y C ++ A
Sbjct: 223 FRPNPSSLSSVLLGCSNLSALKLGKQVH-QLICKSPVSWNITAGTSLLSMYCKCGDLEDA 281
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
KLF + +DV++W ++I+GYA+ G A +FDKM ++
Sbjct: 282 WKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDE------------------- 322
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAI 261
G +P+ V L+AC G +D G + ++ V G+E T +
Sbjct: 323 ------------GMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCV 370
Query: 262 IDMYAKCGCIETACSVFDSMP 282
+D+ + G + A + MP
Sbjct: 371 VDLLGRGGKLVEAVDLIKKMP 391
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 131/353 (37%), Gaps = 112/353 (31%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY--------VQVDLFKEA 204
+VIS +I + +SG ++ A ++F+ M K V+W++M+ GY V LF
Sbjct: 4 NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63
Query: 205 LE----HFNYMQLCGFR----------------PNHAGIVGALTACAFLGALDQGR---- 240
E +N M C + A ++ + G +DQ R
Sbjct: 64 PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123
Query: 241 ---------W---IHAYVDRNGIEL-----------DIILGTAIIDMYAKCGCIETACSV 277
W I YV+ ++L ++ TA+I + K G IE A
Sbjct: 124 VMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKY 183
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------SEIYGI 329
F+ MP +++ + ++I+G + Q+ + ++LF RM G PN S S + +
Sbjct: 184 FEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSAL 243
Query: 330 EPGVQHY---------------GCLVDLLGRAGMLEAAKKVVREMP-------------- 360
+ G Q + L+ + + G LE A K+ MP
Sbjct: 244 KLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGY 303
Query: 361 --------------------IEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
++PD A+L+AC G VDLG E S+V
Sbjct: 304 AQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVR 356
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 39/260 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K KQ+ + S W+ A ++ +C GDL ++LF+ + + WN M
Sbjct: 243 LKLGKQVHQLICKSPVSWNITAGTSLLSMYCKC---GDLEDAWKLFLVMPQKDVVTWNAM 299
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I G+A+ KA L+ +M P+ TF +L AC HA + LG
Sbjct: 300 ISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACN-----------HAGFVDLGI 348
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E ++ ++ D V +T +++ + G++ A + K
Sbjct: 349 EYFNSMVR-------------------DYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKK 389
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MP K + + G ++ E L F L P A G + A++
Sbjct: 390 MPFKPHSAIFGTLLGACRIHKNLE-LAEFAAKNLLNLDPESAA--GYVQLANVYAAMN-- 444
Query: 240 RWIHAYVDRNGIELDIILGT 259
RW H + R ++ + ++ T
Sbjct: 445 RWDHVAMVRRSMKDNKVIKT 464
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/506 (30%), Positives = 257/506 (50%), Gaps = 57/506 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q++Q+ + + +G + K++ + G L LF + R + W+ ++ G
Sbjct: 68 QVRQVHAQIATNGAFRNLAVANKLLYM--YVERGALEDAQELFDGMSKRHPYSWSVIVGG 125
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+A+ F +++++LRS ++Y+ ++RAC D L G + H ++ G +
Sbjct: 126 YAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG 185
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
FV L+ +YA C ++ A Q+F KM +
Sbjct: 186 HFVCATLVDMYARCKVVEDAH-------------------------------QIFVKMWK 214
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ +W+ MI + + E+L F+ M+ G P+ +V + ACA LGA+++ + I
Sbjct: 215 RDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAI 274
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
HAY++ G LD+ILGTA+IDMYAKCG +E+A +FD M R+V ++++I+ H Q
Sbjct: 275 HAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQG 334
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
A+ELF M G++PN SM + YG+ P V+HY C
Sbjct: 335 EKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTC 394
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG L+ A +++ MP+E D + GALL ACR+H +DL + SL++
Sbjct: 395 MVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQK 454
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G +VLLSNIYA+ +W + K R M +RK+PG + IEV + +F G++T+
Sbjct: 455 PGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRS 514
Query: 459 EEIVLLLFGIDKHLKSLCFFDDGNEV 484
EI +L + + L+ + D N+V
Sbjct: 515 NEIYKMLKRLGEKLEVAGYHPDTNDV 540
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L Q R +HA + NG ++ + ++ MY + G +E A +FD M R ++++ ++ G
Sbjct: 66 LFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGG 125
Query: 296 LANHDQSASAIELFMRMQLEG 316
A S +F + G
Sbjct: 126 YAKVGNFFSCFWMFRELLRSG 146
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/523 (30%), Positives = 253/523 (48%), Gaps = 89/523 (17%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+ Q+ +HL G D F V + I +++ + +S+ +F + +TF+WN+++ G+
Sbjct: 45 LHQVHAHLIQKGLEQDSFLVTQFIS--ASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGY 102
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
K + + +LY +M R D P+ YTF +L+ CA + G+ H ++R G +
Sbjct: 103 CAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDI 162
Query: 124 FVLNGLLHLYATCNCMDPARK-------------------------------LFDMSVNR 152
+V L++LY +D ARK LFD+ R
Sbjct: 163 YVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPER 222
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS------------------------- 187
+V SW ++I GY K G + A + FD+MPEKN VS
Sbjct: 223 NVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAP 282
Query: 188 ------WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
WSA+I+GY Q EA++ F M +P+ + + AC+ LG LD +W
Sbjct: 283 ERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKW 342
Query: 242 IHAYVDRNGIELD-IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+ +Y R ++L + A+IDM AKCG +E A +F+ MP RD+ +Y S++ GL+ H
Sbjct: 343 VDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHG 402
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
A+ LF RM E + P+ E M Y + P V HY
Sbjct: 403 HGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHY 462
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+VDLL R+G L+ A ++++ +P++ GALL AC+++ D +L + L+E
Sbjct: 463 ACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEP 522
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
++ G +VLLSNIYA+ ++W V VR M + +RK+PGCS I
Sbjct: 523 ENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 241/461 (52%), Gaps = 36/461 (7%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL--RACAD 100
+ F ++ R WNT+I G+A+ E +A L+ + D S + R +
Sbjct: 235 QFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEE 294
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
LF + +V W N +L Y ++ A++LFD+ R+V +W ++
Sbjct: 295 ARELFDRMPERNEV---SW-------NAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTM 344
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
I GYA+ G+IS A+ +FDKMP+++ VSW+AMI GY Q EAL F M+ G R N
Sbjct: 345 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNR 404
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+ AL+ CA + AL+ G+ +H + + G E +G A++ MY KCG IE A +F
Sbjct: 405 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 464
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M +D+ ++ ++I+G + H A+ F M+ EG+ P++
Sbjct: 465 MAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 524
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
+M++ YG+ P QHY C+VDLLGRAG+LE A +++ MP EPD + G LL A R
Sbjct: 525 RQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASR 584
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
VHG+ +L + + + ++ G++VLLSN+YAS+ +W V K+R M D V+KVPG
Sbjct: 585 VHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGY 644
Query: 437 SLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
S IE+ F G+ + +EI L +D +K +
Sbjct: 645 SWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGY 685
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/449 (24%), Positives = 181/449 (40%), Gaps = 110/449 (24%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS-FI 94
G+ LF + R WN MI+G+ KA L+++M D N S +
Sbjct: 104 GEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYA 163
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY--------------------- 133
C D + +V E D N LL Y
Sbjct: 164 QNGCVDDA---------RRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL 214
Query: 134 ATCNCM----------DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+ NC+ AR+ FD RDV+SW ++I GYA++G+I ARQ+FD+ P
Sbjct: 215 VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH 274
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ +W+AM++GY+Q + +EA E F+ M P ++ A L QG +
Sbjct: 275 DVFTWTAMVSGYIQNRMVEEARELFDRM------PER----NEVSWNAMLAGYVQGERVE 324
Query: 244 AYVDRNGIE--LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+ + ++ +I YA+CG I A ++FD MP RD ++ ++I+G +
Sbjct: 325 MAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGH 384
Query: 302 SASAIELFMRMQLEGVVPNESM--------SEIYGIEPGVQHYGCLVD-------LLGRA 346
S A+ LF+ M+ EG N S +++ +E G Q +G LV +G A
Sbjct: 385 SYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNA 444
Query: 347 --------GMLEAAKKVVREMP----------------------------------IEPD 364
G +E A + +EM ++PD
Sbjct: 445 LLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPD 504
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVE 393
+ + A+L+AC G VD G++ ++ +
Sbjct: 505 DATMVAVLSACSHTGLVDKGRQYFHTMTQ 533
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 35/322 (10%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN I + +A ++K+M R + N S LR G A+++
Sbjct: 62 WNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRN---------GEFELARML 112
Query: 116 RLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
D V N ++ Y + AR+LF+ RDV SW ++++GYA++G + AR
Sbjct: 113 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDAR 172
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++FD+MPEKN VSW+A+++ YVQ +EA F G R N A + C G
Sbjct: 173 RVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSRENWALVS---WNCLLGG 223
Query: 235 ALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+ + + + A + +++ D++ II YA+ G I+ A +FD P DVF +T+++
Sbjct: 224 FVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMV 283
Query: 294 SGLANHDQSASAIELFMRM----------QLEGVVPNESM---SEIYGIEP--GVQHYGC 338
SG + A ELF RM L G V E + E++ + P V +
Sbjct: 284 SGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNT 343
Query: 339 LVDLLGRAGMLEAAKKVVREMP 360
++ + G + AK + +MP
Sbjct: 344 MITGYAQCGKISEAKNLFDKMP 365
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S LF + R W MI G+++ +A L+ M R N +FS L
Sbjct: 352 GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSAL 411
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
CAD L +G H ++++ G+E+ FV N LL +Y C ++ A LF +D++
Sbjct: 412 STCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIV 471
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW ++I GY++ G +EAL F M+ G
Sbjct: 472 SWNTMIAGYSRHG-------------------------------FGEEALRFFESMKREG 500
Query: 216 FRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ A +V L+AC+ G +D+GR + H G+ + ++D+ + G +E A
Sbjct: 501 LKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEA 560
Query: 275 CSVFDSMP 282
++ +MP
Sbjct: 561 HNLMKNMP 568
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 120/267 (44%), Gaps = 24/267 (8%)
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K S + D+ W I+ Y ++G+ S A ++F +MP ++VS++AMI+GY++ F+
Sbjct: 49 KPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFEL 108
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
A F+ M P + + ++ + G+ + E D+ I+
Sbjct: 109 ARMLFDEM------PERDLVSWNVMIKGYVRNRNLGKARELF--ERMPERDVCSWNTILS 160
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ---------- 313
YA+ GC++ A VFD MP ++ ++ +L+S + + A LF +
Sbjct: 161 GYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCL 220
Query: 314 LEGVVPNESMSEIYGIEPGVQ-----HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
L G V + + E ++ + ++ + G ++ A+++ E P+ D +
Sbjct: 221 LGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH-DVFTW 279
Query: 369 GALLNACRVHGDVDLGKETVESLVERS 395
A+++ + V+ +E + + ER+
Sbjct: 280 TAMVSGYIQNRMVEEARELFDRMPERN 306
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/475 (32%), Positives = 251/475 (52%), Gaps = 57/475 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+S+ +LF + F+WNT+++G+ + P KA ++Y +M P+ +TF F++
Sbjct: 83 GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+ACA+ + L+ GL H V++ G E F +V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLE-------------------------FVAAVR---- 173
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T L+ Y K G++ A +F M E++ V+W+A+I VQ +AL+ F M + G
Sbjct: 174 --TELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAG 231
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ IV AL+AC LG L+ G I+ + GI+ +II+ A +DM AKCG ++ A
Sbjct: 232 IKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAM 291
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
++FD MP R+V +++++I G A + +S A+ LF RM+ +GV PN
Sbjct: 292 NLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTG 351
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ S+ I+P +HY C+VDLLGR+G LE A ++ MPIE D + G
Sbjct: 352 RVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWG 411
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
ALL AC +H ++ LG+ + L E + + HVLLSN+YA+ +W+ VEKVR+ M+
Sbjct: 412 ALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKG 471
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
RKV S +E +G + G++++ I+ L + K +KS+ + + + V
Sbjct: 472 ARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSV 526
>gi|22331393|ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g28660
gi|9294280|dbj|BAB02182.1| unnamed protein product [Arabidopsis thaliana]
gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis thaliana]
gi|332643950|gb|AEE77471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 170/507 (33%), Positives = 263/507 (51%), Gaps = 69/507 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSH-GYRLFVCLQYRTTFIWNT 58
+KQIK S + G + +A+ K++ F ++ H +F ++ +F+++T
Sbjct: 24 VKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNSFVYDT 83
Query: 59 MIRGFAEKNEP---IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
MIR + ++P ++ F L + D P+ TF F++ AC VG H V+
Sbjct: 84 MIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFSVGKQIHCWVV 143
Query: 116 RLG-WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+ G + S V G+L +Y + LFD AR
Sbjct: 144 KNGVFLSDGHVQTGVLRIYVE------DKLLFD-------------------------AR 172
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++FD++P+ + V W ++NGYV+ L E LE F M + G P+ + ALTACA +G
Sbjct: 173 KVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVG 232
Query: 235 ALDQGRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
AL QG+WIH +V + IE D+ +GTA++DMYAKCGCIETA VF+ + R+VF++ +LI
Sbjct: 233 ALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALI 292
Query: 294 SGLANHDQSASAIELFMRMQLE-GVVPN------------------------ESMSEIYG 328
G A + + A R++ E G+ P+ E+M YG
Sbjct: 293 GGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYG 352
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I P +HY C+VDL+ RAG L+ A ++ +MP++P V GALLN CR H +V+LG+ V
Sbjct: 353 ITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAV 412
Query: 389 ESLVERSL----DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
++L++ + E V LSNIY S ++ KVR +E +RK PG SL+EVDG+
Sbjct: 413 QNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGI 472
Query: 445 VCEFVSGE--RTNVLMEEIVLLLFGID 469
V +FVSG+ N+L ++ L +D
Sbjct: 473 VTKFVSGDVSHPNLLQIHTLIHLLSVD 499
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/493 (32%), Positives = 240/493 (48%), Gaps = 70/493 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+++Q Q +T SG PF + KII F S S +G L + +F F+ NTMI
Sbjct: 19 VKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTMDNPFVCNTMI 78
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA--------DTSCLFVGLIC-- 110
R +A+ PIKA LY M R D +++ + F L+ACA D C + + C
Sbjct: 79 RAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIKCTQLDIACKG 138
Query: 111 ---HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
H ++ RLG + F+ N L++LY+ C +D AR++FD + + SW +I+ Y +
Sbjct: 139 AEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQI 198
Query: 168 GQISIARQMFDKMPEKN-------------------------------AVSWSAMINGYV 196
A + MP KN AVSW++MI GYV
Sbjct: 199 NDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYV 258
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
Q+ + AL F M++ ++ L ACA GAL+ GR IH + + +++
Sbjct: 259 QIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGY 318
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF--MRMQL 314
L A++DMYAKCG + A VF + + + + ++I LA H A+ LF M M +
Sbjct: 319 LSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSV 378
Query: 315 EGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
+G PN M Y I P ++HYGC+VDLL R G+L+
Sbjct: 379 DGARPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLK 438
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A +++ MP E ++ + LL ACRVH VDL +E+ + L + +G +VLLSNIYA
Sbjct: 439 EAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYA 498
Query: 411 STEQWNGVEKVRR 423
++WN VE+ +
Sbjct: 499 EAQRWNDVERASK 511
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 264/531 (49%), Gaps = 78/531 (14%)
Query: 1 MKQIKQIQSHLTVSGTL-----WDPFAVGK-----IIGFCSASDI-------------GD 37
M+ + +H T +G L + F+VGK ++ C D+ GD
Sbjct: 133 MRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGD 192
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+ R+F + W+ MI +A+ N+ +A L+ QM R+ LPN +TF+ +L++
Sbjct: 193 ANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQS 252
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
CA L +G H V+++G + FV N L+ +YA C
Sbjct: 253 CASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKC--------------------- 291
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
G++ + ++F ++P +N V+W+ MI GYVQ +AL + M C +
Sbjct: 292 ----------GRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQ 341
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
+ L ACA L A++ G IH+ + + D+++G A+IDMYAKCG I+ A V
Sbjct: 342 ASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLV 401
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------------- 321
FD + RD ++ ++ISG + H A++ F MQ VPN+
Sbjct: 402 FDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLL 461
Query: 322 --------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
SM + YGIEP ++HY C+V LLGR+G L+ A K++ E+P+EP+ V ALL
Sbjct: 462 DIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLG 521
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
AC +H DVDLG + + +++ E HVLLSNIYA T +WN V VR+ M++ V+K
Sbjct: 522 ACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKE 581
Query: 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
PG S IE G+V F G+ ++ M+ I +L ++ + + D N V
Sbjct: 582 PGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAV 632
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 154/333 (46%), Gaps = 54/333 (16%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R T + T+I+G+ + + + L+ ++ R N + F+ IL+ C +
Sbjct: 4 RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HA + +LG ES FV T+LI+ YA G +
Sbjct: 64 HACIYKLGHESNAFV-------------------------------GTALIDAYAVCGSV 92
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
+ ARQ FD + K+ VSW+ M+ Y + D F+++L+ F M++ GF PNH G L AC
Sbjct: 93 NSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
L A G+ +H V + E+D+ +G ++D+Y K G VF+ MP DV ++
Sbjct: 153 IGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWS 212
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHY------ 336
+IS A +QS A+ELF +M+ V+PN +S + I ++ G Q +
Sbjct: 213 FMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKV 272
Query: 337 ---------GCLVDLLGRAGMLEAAKKVVREMP 360
L+D+ + G L+ + K+ E+P
Sbjct: 273 GLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 159/369 (43%), Gaps = 55/369 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ + F + + W M+ +AE + + L+ +M F PN++TF+ +L
Sbjct: 90 GSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVL 149
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC VG H V++ +E +V GLL LY + ++F+ DVI
Sbjct: 150 KACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVI 209
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
W+ +I+ YA+S Q +EA+E F M+
Sbjct: 210 PWSFMISRYAQSNQ-------------------------------SREAVELFGQMRRAF 238
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN L +CA + L G+ +H +V + G++ ++ + A++D+YAKCG ++ +
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIY 327
+F +PNR+ + ++I G A+ L+ M V +E + + +
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358
Query: 328 GIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+E G Q + L+D+ + G ++ A ++V +M E D A++
Sbjct: 359 AMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMI 417
Query: 373 NACRVHGDV 381
+ +HG V
Sbjct: 418 SGYSMHGLV 426
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 165/504 (32%), Positives = 251/504 (49%), Gaps = 63/504 (12%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K++ H+ G F V ++ ++ L LF + R W TMI ++
Sbjct: 75 KRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL--LEEAEDLFDEMPERNVVSWTTMISAYS 132
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
K KA M R PN +T+S +LRAC L H +I+ G ES F
Sbjct: 133 NKLND-KALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQ---LHCGIIKTGLESDVF 188
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V + L+ +Y+ W+ L N +FD+MP ++
Sbjct: 189 VRSALIDVYS---------------------KWSDLDNALG----------VFDEMPTRD 217
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V W+++I G+ Q EAL F M+ GF + A + L AC L L+ GR +H
Sbjct: 218 LVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHV 277
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+V + + D+IL A+IDMY KCG +E A S F M +DV +++++++GLA + S
Sbjct: 278 HVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQ 335
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ELF M+ G PN SM +++G++PG +HYGCL+
Sbjct: 336 ALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLI 395
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ A K++ EM EPD+ LL ACRVH +VDL + ++E + G
Sbjct: 396 DLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAG 455
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
++LLSNIYA+T++W V +VR+ M + +RK PGCS IEVD + F+ G+ ++ +EE
Sbjct: 456 TYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEE 515
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEV 484
IV L + + + + + D N V
Sbjct: 516 IVQRLNDLIERVMGVGYVPDTNFV 539
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 238/431 (55%), Gaps = 28/431 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
TT W + I + +A + M + PN+ T +L CAD C G H
Sbjct: 28 TTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCAD--CEPFGDSLH 85
Query: 112 AQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
+LG + ++ +L +Y+ AR +FD +++ ++W ++I+GY +SG++
Sbjct: 86 GYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRV 145
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A ++FD+MPE++ +SW+AMING+V+ L +EAL F MQ+ G +P++ ++ AL AC
Sbjct: 146 DDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAALAAC 205
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
A LGAL G W+H +V + ++ + ++ID+Y +CGC+E A VFD M R V ++
Sbjct: 206 ANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWN 265
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
S+I G A + + ++ F RMQ E P+ E+M
Sbjct: 266 SVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRD 325
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-DVDLGK 385
Y I P ++HYGCLVDL RAG LE A KVV MP++P+ V+G+LL ACR HG D +L +
Sbjct: 326 YRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGSLLAACRTHGNDTELAE 385
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
++ L E + +V+LSN+YA+ QW G K+RR M+ ++K PG S IE+D
Sbjct: 386 RMMKRLSELKVKGHSNYVILSNMYAADGQWEGASKMRRKMKGLGLKKQPGFSSIEIDDRT 445
Query: 446 CEFVSGERTNV 456
F++G+ +V
Sbjct: 446 HVFMAGDSAHV 456
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 45/326 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F + R W MI GF +K +A A +++M S P+ L
Sbjct: 143 GRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAAL 202
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L GL H V+ +++ V N L+ LY C C++ AR++FD R V+
Sbjct: 203 AACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVV 262
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G E+L +F MQ
Sbjct: 263 SWNSVIVGFAANGHA-------------------------------HESLVYFRRMQEER 291
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F+P+ GALTAC+ +G +++G R+ A I I ++D+Y++ G +E A
Sbjct: 292 FKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEA 351
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
V +SMP + + SL++ H E M+ E V S
Sbjct: 352 LKVVESMPMKPNEVVIGSLLAACRTHGNDTELAERMMKRLSELKVKGHS----------- 400
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A K+ R+M
Sbjct: 401 -NYVILSNMYAADGQWEGASKMRRKM 425
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 34/178 (19%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
Q ++ + VSW++ I + EA + F M+L G PNH ++ L+ CA
Sbjct: 19 QKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCE 78
Query: 235 ALDQGRWIHAYVDRNGIELD-IILGTAIIDMYAK-------------------------- 267
G +H Y + G++ + +++GTAI+ MY+K
Sbjct: 79 PF--GDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMI 136
Query: 268 -----CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
G ++ A VFD MP RD+ ++T++I+G A+ F MQ+ GV P+
Sbjct: 137 DGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPD 194
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 201/337 (59%), Gaps = 32/337 (9%)
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM-PEKNAVSWSAMINGYVQVDLF 201
R++ + V DV++ +L++ YAK G + A + F M P KN V+W+ MI+ + +
Sbjct: 188 RRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGEL 247
Query: 202 KEALEHFNYM---QLCGFRP--NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI- 255
+EALE F M Q C P + A V L ACA LGALD GRW+HAY+ R G +
Sbjct: 248 QEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAG 307
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
++G A+IDMYAKCG +E A VFD+M RDV+ YTS+ISGLA H + A+ LF M+
Sbjct: 308 VVGNALIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQA 367
Query: 316 GVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
V PNE +M+E++G+ PG++HYGC+VD+LGRAG L+
Sbjct: 368 RVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDE 427
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411
A+++V MPI PD + G+LL ACR HG VD + + + E D G +VL+SN+YA
Sbjct: 428 AEELVSVMPIRPDAIIWGSLLAACRAHGHVDRAERVMRRMAEDE-DDAGDYVLMSNMYAQ 486
Query: 412 TEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
+ +VRR M +V KVPGCSLIE+DGVV EF
Sbjct: 487 EGRHGKAVQVRRQMRRGKVDKVPGCSLIEIDGVVHEF 523
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 40/286 (13%)
Query: 36 GDLSHGYRLF-VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-----SDFLPNNY 89
GD + R F + + WNTMI A E +A L+++ML+ S LP++
Sbjct: 213 GDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREMLQQQGCTSSPLPDDA 272
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDM 148
TF +L ACA L G HA ++R G ++ V+ N L+ +YA C ++ A ++FD
Sbjct: 273 TFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVGNALIDMYAKCGAVEQAAEVFDA 332
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
RDV ++TS+I+G A G+ +EAL F
Sbjct: 333 MTRRDVYTYTSMISGLAMHGR-------------------------------GEEALALF 361
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAK 267
M+ RPN +G L+AC G ++ G R A + +G+ I ++DM +
Sbjct: 362 GDMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGR 421
Query: 268 CGCIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRM 312
G ++ A + MP R D + SL++ H A + RM
Sbjct: 422 AGRLDEAEELVSVMPIRPDAIIWGSLLAACRAHGHVDRAERVMRRM 467
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 44/232 (18%)
Query: 159 SLINGYAKSGQISIARQMFDKM---PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+L+ Y G+ +A +F P + VSW+AM+ + ++ LF+EA E F M G
Sbjct: 99 ALVALYLACGRRGVASDLFAGAGGGPAPDVVSWTAMVTWHARLGLFREAAELFLAMADDG 158
Query: 216 FRPNHAGIVGALTACAFLGA-LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
A A A L R +H V G+ LD++ A++DMYAKCG A
Sbjct: 159 AVVVDAVAAAAAFAACAGAGELVLAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAA 218
Query: 275 CSVFDSM-PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
F +M P +++ + ++IS A + A+ELF M +
Sbjct: 219 LRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM--------------------L 258
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Q GC L PD+ A+L AC G +D G+
Sbjct: 259 QQQGCTSSPL-------------------PDDATFVAVLGACARLGALDAGR 291
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/474 (32%), Positives = 237/474 (50%), Gaps = 55/474 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G + +F + +T WN+M+ G+ + EP KA A++++ML P T
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L ACAD L G H V +L S
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGS------------------------------- 382
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D+ SLI+ Y+K ++ IA +F+ + + VSW+AMI GY Q EAL F+ M+
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G +P+ +V + A A L +WIH + R+ ++ +I + TA++DMY+KCG I
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
A +FD + +R V + ++I G H +A++LF +M+ V PN+
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM + YG+EP + HYG +VDLLGRAG ++ A + MPI P V
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
GA+L AC++H ++++G++ + L E + D G HVLL+NIYAST +W+ V +VR+ ME
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN 482
++K PGCS++E+ V F SG T+ + I L + +K+ + D N
Sbjct: 683 GLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTN 736
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 156/320 (48%), Gaps = 33/320 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK++ QI + +G + K++ S G ++ R+F + + +++TM+
Sbjct: 62 MKELHQIIPLVIKNGLYNEHLFQTKLVSLFS--KYGSINEAARVFEPIDDKLDALYHTML 119
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G+A+ + A A +M D P Y F+++L+ C D + L G H Q+I +
Sbjct: 120 KGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFA 179
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ F + G++++YA C +D A K+FD RD++SW ++I G++++G
Sbjct: 180 ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNG------------ 227
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ALE MQ G RP+ +V L A A +G L G+
Sbjct: 228 -------------------FAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y R G + + TA+ DMY+KCG +ETA +FD M + V ++ S++ G +
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328
Query: 301 QSASAIELFMRMQLEGVVPN 320
+ AI +F +M EG+ P
Sbjct: 329 EPEKAIAVFEKMLEEGIDPT 348
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/485 (24%), Positives = 215/485 (44%), Gaps = 98/485 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K+ K+I L + + FA+ ++ + I D Y++F + R WNT+
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDD---AYKMFDRMPERDLVSWNTI 219
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I GF++ KA L +M P++ T +L A AD L VG H IR G+
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF 279
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
KL ++S T+L + Y+K G + AR +FD
Sbjct: 280 A-----------------------KLVNIS--------TALADMYSKCGSVETARLIFDG 308
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +K VSW++M++GYVQ ++A+ F M G P I+ AL ACA LG L++G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+++H +VD+ + DI + ++I MY+KC ++ A +F+++ R ++ ++I G A +
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428
Query: 300 DQSASAIELFMRMQLEGVVPNE--------SMSE---------IYG------IEPGVQHY 336
+ + A+ F M+ G+ P+ +++E I+G ++ +
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT 488
Query: 337 GCLVDLLGRAGMLEAAKKV----------------------------------VREMPIE 362
LVD+ + G + A+K+ +++ +E
Sbjct: 489 TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESL-----VERSLDHEGVHV-LLSNIYASTEQWN 416
P++ ++++AC G VD G +S+ +E S+DH G V LL E W+
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWD 608
Query: 417 GVEKV 421
+E +
Sbjct: 609 FIENM 613
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 24/270 (8%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T L++ ++K G I+ A ++F+ + +K + M+ GY + + AL M+ +
Sbjct: 85 TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P L C L +G+ IH + N ++ T +++MYAKC I+ A +
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEI--- 326
FD MP RD+ ++ ++I+G + + + A+EL +RMQ EG P+ + +++
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264
Query: 327 --------YGIEPG----VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
Y I G V L D+ + G +E A+ + M + ++++
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD-QKTVVSWNSMMDG 323
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVL 404
+G+ + E ++E +D GV ++
Sbjct: 324 YVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 166/510 (32%), Positives = 250/510 (49%), Gaps = 65/510 (12%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+ L SG DP+ K+I +C D+G + H ++F + +T F+WN + R A
Sbjct: 96 VHHRLVGSGLDQDPYLATKLINMYC---DLGSVDHACKVFDETREKTIFVWNAIFRALAM 152
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC----LFVGLICHAQVIRLGWES 121
+ LY QM N +T++++L+AC + L G HA ++R G+E
Sbjct: 153 ASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEG 212
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ V+ T+L++ YA+ G +S A +F MP
Sbjct: 213 HVHVM-------------------------------TTLLDVYARFGYVSYASSVFGAMP 241
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQL--CGFRPNHAGIVGALTACAFLGALDQG 239
+KN VSWSAMI Y + ++ +ALE F M L C PN +V L ACA L AL+ G
Sbjct: 242 DKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG 301
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ +HAYV R G++ + + +I MY +CG I T VFD M RDV ++ SLIS H
Sbjct: 302 KLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMH 361
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
AI++F M GV P+ ESM Y I P ++H
Sbjct: 362 GLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEH 421
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y C+VD+LGRA L+ A ++++ M +P V G+LL +CR+H +V+L + L E
Sbjct: 422 YACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELE 481
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +VLLS+IYA + WN V +VR+ +E ++K+P CS IEV + VS E N
Sbjct: 482 PKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYN 541
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
+EE+ L + +K+ + N V
Sbjct: 542 PQIEELCAFLITLLTEIKNQGYVPQTNVVT 571
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 140/299 (46%), Gaps = 33/299 (11%)
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
++++ ++N + + + +D +L +++D T LIN Y G + A ++FD+
Sbjct: 75 KTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDE 134
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF----LGA 235
EK W+A+ ++ L + M G N L AC +
Sbjct: 135 TREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICP 194
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L +G+ IHA++ R+G E + + T ++D+YA+ G + A SVF +MP++++ +++++I+
Sbjct: 195 LRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIAC 254
Query: 296 LANHDQSASAIELFMRMQLEG--VVPN--------ESMSEIYGIEPG--VQHY------- 336
A ++ A+ELF M LE VPN ++ + + +E G V Y
Sbjct: 255 YAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLD 314
Query: 337 ------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
L+ + GR G + ++V M + D +L++ +HG LGK+ ++
Sbjct: 315 STLPVLNTLITMYGRCGEISTGQRVFDYMK-KRDVISWNSLISIYGMHG---LGKKAIQ 369
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 238/419 (56%), Gaps = 30/419 (7%)
Query: 86 PNNYTFSFILRACA-DTSCLF---VGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141
PN+ T +L ACA D+S + L HA ++L + + L Y
Sbjct: 66 PNDVTLLTVLSACAGDSSSALARPLALSLHALAVKL-FPCNLLLCTCLARFYLASRLPHL 124
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
A KLFD +R V+++ ++I G ++G ++ AR++FD+MP + VSW+A+I+G V+
Sbjct: 125 AIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRH 184
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
EA++ F+ M G P++ +V A++ACA +GAL G W+H +V +E ++ + ++
Sbjct: 185 DEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSL 244
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
IDMYA+CG ++ A VF + R V ++ S+I G A + Q A A+E F M+ EG P+
Sbjct: 245 IDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDT 304
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
++M +GI ++HYGC+VDLLGRAG L A +VV
Sbjct: 305 VTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVVE 364
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP+ P+ VLGALL CR+HGDVDL ++ ++ L+E+ + +VLLSNIYA+ +W G
Sbjct: 365 SMPMRPNEVVLGALLAGCRMHGDVDLAEQLMQHLLEQDPGGDSNYVLLSNIYAAVGKWGG 424
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLC 476
KVR M+ V+K PG S +E+DG V EFV G+R++ E+ +L G+ H + C
Sbjct: 425 AGKVRSLMKSRGVKKRPGQSTVEIDGEVHEFVCGDRSHPQAREVFEVL-GLLTHEMAGC 482
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 111/274 (40%), Gaps = 63/274 (22%)
Query: 43 RLFVCLQYRTTFIWNTMIRG-------------FAEKNEPIK------------------ 71
+LF + R+ +NTMI G F E P K
Sbjct: 127 KLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDE 186
Query: 72 AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
A + MLR P+ T + ACA+ L +G+ H V+ E V N L+
Sbjct: 187 AIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLID 246
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+YA C +D AR++F R V+SW S+I G+A +GQ
Sbjct: 247 MYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQ---------------------- 284
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNG 250
+ +A+EHF M+ GF+P+ G LTAC+ G D+G R+ A +G
Sbjct: 285 ---------YADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHG 335
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
I + ++D+ + G + A V +SMP R
Sbjct: 336 IAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMR 369
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+++ ++ V+ +L D +A G + ++F ++ RT WN+MI GFA
Sbjct: 232 KRLEHNVRVANSLIDMYA-----------RCGQVDFARQVFGRIRKRTVVSWNSMIVGFA 280
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ A ++ M R F P+ TF+ +L AC+ HA + G YD
Sbjct: 281 ANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACS-----------HAGLTDEGLRYYDA 329
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK- 183
+ + + + + +++ ++G++ A ++ + MP +
Sbjct: 330 MRT-------------------EHGIAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRP 370
Query: 184 NAVSWSAMING---YVQVDLFKEALEHF 208
N V A++ G + VDL ++ ++H
Sbjct: 371 NEVVLGALLAGCRMHGDVDLAEQLMQHL 398
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 163/491 (33%), Positives = 255/491 (51%), Gaps = 63/491 (12%)
Query: 1 MKQIKQIQSHLTVSGTLW-DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ ++KQI + L V LW D F + S GD ++F + R W +
Sbjct: 200 IAEVKQIHT-LAVKTDLWCDMFVQNSFVHVYSIC--GDTVGASKVFDFMPVRDVVSWTGL 256
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I G+ + A AL+ LR D PN TF IL AC CL +G H
Sbjct: 257 ISGYMKAGLFNDAVALF---LRMDVAPNAATFVSILGACGKLGCLNLGKGIH-------- 305
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
GL+ Y ++++ +L++ Y K ++ A+++FD+
Sbjct: 306 --------GLVSKYPH---------------GKELVVSNTLMDMYVKCESVTDAKRLFDE 342
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+PEK+ VSW++MI+G VQ +E+L+ F M GF P+ + L+ACA LG LD G
Sbjct: 343 IPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYG 402
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RW+H Y+D + I+ D+ +GT++IDMYAKCGCIE A +F+ +P++++ + + I GLA +
Sbjct: 403 RWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAIN 462
Query: 300 DQSASAIELFMRMQLEGVVPNE-------------------------SMSEIYGIEPGVQ 334
A++ F + G PNE S Y + P ++
Sbjct: 463 GHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLE 522
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VDLL RA ++E A +++ +MP+ PD ++GALL+A +G+V+L E ++++
Sbjct: 523 HYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNF 582
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
GV+VLLSN YA+ ++W V VRR M++ + K PG SLI VDG +FV G+
Sbjct: 583 ECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLIRVDGKSHKFVVGDNN 642
Query: 455 NVLMEEIVLLL 465
+ E+I +LL
Sbjct: 643 HPQSEDIHVLL 653
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 169/386 (43%), Gaps = 63/386 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWNTM 59
++ KQI + L S + + V K F + D+ + + ++F N +
Sbjct: 97 LRSFKQIHAQLLRSTLVDNDLVVTKAANFF-GKHVTDIRYPCNFLKQFDWSFSSFPCNLI 155
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I G+ N P A +Y+ ++ + F+P+ YT +L++CA S + H ++
Sbjct: 156 ISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDL 215
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
FV N +H+Y+ C A K+FD RDV+SWT LI+GY K+G
Sbjct: 216 WCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAG----------- 264
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
LF +A+ F M + PN A V L AC LG L+ G
Sbjct: 265 --------------------LFNDAVALFLRMDVA---PNAATFVSILGACGKLGCLNLG 301
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH V + ++++ ++DMY KC + A +FD +P +D+ ++TS+ISGL +
Sbjct: 302 KGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQY 361
Query: 300 DQSASAIELFMRM-----QLEGVVPNESMSEIYGIEPGVQHYG----------------- 337
+++LF M + +GV+ +S + G+ YG
Sbjct: 362 QCPQESLDLFYEMLGSGFEPDGVILTSVLSACASL--GLLDYGRWVHEYIDHSRIKWDVH 419
Query: 338 ---CLVDLLGRAGMLEAAKKVVREMP 360
L+D+ + G +E A+++ +P
Sbjct: 420 IGTSLIDMYAKCGCIEMAQQMFNLLP 445
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 148/460 (32%), Positives = 247/460 (53%), Gaps = 27/460 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+ QI +H G + I C++ +++ RLF F++N++I+
Sbjct: 24 HLTQIHAHFLRHGLHQSNQILAHFISVCAS--FNRIAYADRLFSQSHNPNIFLFNSIIKA 81
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ ++ L+ M +P+ YTF+ +L++CA+ +G ++V R G+ +
Sbjct: 82 HSLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCF 141
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ G++ LY C M+ A K+FD +RDV+ W +I G+ K+G + +F +M E
Sbjct: 142 GSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSE 201
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ VSW+ +I+ Q EALE F M+ GF+P+ +V L C+ LGAL+ G+ I
Sbjct: 202 RSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRI 261
Query: 243 HAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H+Y G + I +G ++ID Y KCG IE A ++F M + V ++ ++I G A + +
Sbjct: 262 HSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGK 321
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
AI+LFM M+ E + PN+ SM+E Y I+P ++H+G
Sbjct: 322 GEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFG 381
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLLGR G +E A K+++ MP++P+ + GA+L ACR HG++ L + V+ L+
Sbjct: 382 CMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGACRTHGNLKLAEMAVKELISLEPW 441
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+ G +VLLSN+ A +W VE VR+ M + V+K PG S
Sbjct: 442 NSGNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKAPGQS 481
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/491 (33%), Positives = 258/491 (52%), Gaps = 32/491 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+ V+ +++ F S + L + RLF + F+++ M+
Sbjct: 22 LAHLKQLHGRSVVTARAASQSTTFQLLRFASLR-LSCLPYARRLFDSTPHPNVFLYSAML 80
Query: 61 RGFAEKNEPI----KAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+A + A AL+ +MLR PN + + +LRA V I H+
Sbjct: 81 SAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVLRAACAIGVQLVRSI-HSHAC 139
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G+ +YD + LL Y+ M ARKLFD R+VISWT+L++GYA++G+I A
Sbjct: 140 KSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIV 199
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+MPE++ +W+AMI G Q LF EA+ + M GF+ N + L+AC LG
Sbjct: 200 LFDRMPERDVAAWNAMITGCTQNGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGM 259
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L G+ +H Y R+ + + +IDMY KCG ++ A +FD +R + + SLI+
Sbjct: 260 LKIGKVVHGYAWRSCVGFGSSVVNGLIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLINC 319
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
LA H S SAI +F M+ EG+ P+ + M + IEP
Sbjct: 320 LALHGHSKSAIAVFDEMRDEGIEPDVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEP 379
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
++HYGC+VDLLGRAG E A V+ +M ++PD + G+LLNACR H ++L + +V L
Sbjct: 380 EIEHYGCIVDLLGRAGRFEDAMNVINDMKVQPDEVIWGSLLNACRTHRQLELAEFSVRKL 439
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM-EDNEVRKVPGCSLIEVDGVVCEFVS 450
++ + ++ V+L+N+Y+ W V K+R+ M ED +K+PGCS IEVD F S
Sbjct: 440 LQLNPNNANYVVMLANLYSEGGSWEEVTKIRKLMKEDIMGKKLPGCSWIEVDRKTHRFYS 499
Query: 451 GERTNVLMEEI 461
G+ + E+I
Sbjct: 500 GDDAHPESEDI 510
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 249/463 (53%), Gaps = 30/463 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLI 109
R WN+MI G++++ ++A ++ +ML L P+N+T + IL ACA+ L +G
Sbjct: 237 RDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD--MSVNRDVISWTSLINGYAKS 167
HA ++R E+ V N L+ +YA ++ AR + + + N ++I++TSL++GY K
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKL 356
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G + AR++F+K+ +++ V+W+AMI GYVQ L+ +ALE F M G PN + L
Sbjct: 357 GNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAML 416
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD 285
+ + L L+ G+ IHA + G + A+I MYAK G I A VFD +PN ++
Sbjct: 417 SVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD-LPNGKKE 475
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------ 321
+ ++TS+I LA H AI LF RM G+ P+
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
M+E++ IEP + HY C++DL GRAG+L+ A + MPIEPDN G+LL +C++H +
Sbjct: 536 MMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNA 595
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
DL K E L+ + G ++ L+N+Y++ +W + R+ M+D VRK G S I +
Sbjct: 596 DLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHI 655
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V F + + +EI L+ I + +K + F D V
Sbjct: 656 KNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESV 698
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 206/426 (48%), Gaps = 52/426 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN---------------EPI------- 70
+ G L + +F + ++TF WNT+I G+A++ +P+
Sbjct: 56 AKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIV 115
Query: 71 ---------KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
A ++ +M+ P+ +T S +L +CA L +G H+ V++LG S
Sbjct: 116 GYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGS 175
Query: 122 YDFVLNGLLHLYATCNCMDP--ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
V LL++YA C DP A+ +FD +++ +W +LI+ Y +SGQ +A F+K
Sbjct: 176 CVPVATSLLNMYAKCG--DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALTACAFLGALDQ 238
MP+++ VSW++MI+GY Q EAL F+ M +P++ + L+ACA L L+
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD--SMPNRDVFAYTSLISGL 296
G+ IHAY+ R E +G A+I MYAK G +E A + + N ++ A+TSL+ G
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
A E+F +++ VV +M Y ++ G+ + LE + +V
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGY-VQNGLWN-----------DALELFRLMV 401
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER-SLDHEGVHVLLSNIYASTEQW 415
E P EP++Y L A+L+ ++ GK+ S ++ V L +YA T
Sbjct: 402 NEGP-EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNI 460
Query: 416 NGVEKV 421
N ++V
Sbjct: 461 NVAKRV 466
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 22/344 (6%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
F+ IL+ F G H Q+I+ G +++N L+ YA + A +FD
Sbjct: 13 FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ SW +LI+GYAK G ++R++ +MP+ + VSW+A+I GY Q LF A+ F
Sbjct: 73 LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M P+ + L++CA LD GR IH++V + G+ + + T++++MYAKCG
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
A VFD M +++ + +LIS Q A F +M +V SM Y
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGY--- 249
Query: 331 PGVQHYGCLVDLLGRAGMLEAA---KKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
Q Y LEA K++ E ++PDN+ L ++L+AC +++GK+
Sbjct: 250 -SQQGYN-----------LEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQI 297
Query: 388 VESLVERSLDHEG-VHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
++ + G V L ++YA + GVE R +E N
Sbjct: 298 HAYILRAETETSGAVGNALISMYAKS---GGVEIARLIVEHNRT 338
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 129/284 (45%), Gaps = 38/284 (13%)
Query: 26 IIGFCSASD----IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
II F S D +G++ +F L+ R W MI G+ + A L++ M+
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402
Query: 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141
PN+YT + +L + + L G HA I+ G S V N L+ +YA ++
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462
Query: 142 ARKLFDM-SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
A+++FD+ + ++++SWTS+I A+ G L
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHG-------------------------------L 491
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGT 259
KEA+ F M G +P+H VG L+AC +G ++QGR + + + + IE +
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYA 551
Query: 260 AIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQS 302
+ID+Y + G ++ A +SMP D A+ SL++ H +
Sbjct: 552 CMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNA 595
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 160/512 (31%), Positives = 255/512 (49%), Gaps = 63/512 (12%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
++ H+ +G+ DPF K+IG SD+G + + ++F + RT ++WN + R
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGM--YSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC----LFVGLICHAQVIRLGWES 121
+ LY +M R + +T++++L+AC + C L G HA + R G+ S
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNS 215
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ +++ T+L++ YA+ G + A +F+ MP
Sbjct: 216 HVYIM-------------------------------TTLVDMYARFGCVDYASYVFNGMP 244
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYM--QLCGFRPNHAGIVGALTACAFLGALDQG 239
+N VSWSAMI Y + EAL F M + PN +V L ACA L AL+QG
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG 304
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R IH Y+ R G++ + + +A++ MY +CG ++ VFD M +RDV ++ SLIS H
Sbjct: 305 RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVH 364
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
AI++F M G P ESM +GI+P V+H
Sbjct: 365 GYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEH 424
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y C+VDLLGRA L+ A K+V++M EP V G+LL +CR+HG+V+L + L
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +VLL++IYA + W+ V++V++ +E ++K+PG +EV + FVS + N
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFN 544
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
LME+I L + + +K + V E
Sbjct: 545 PLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 56/331 (16%)
Query: 77 KQMLR---SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
KQ LR + P+ T+ ++ C S L GL H ++ G + F+ L+ +Y
Sbjct: 63 KQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMY 122
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
+ +D ARK+FD + R + W +L +G ++ KM N +
Sbjct: 123 SDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM---NRIG------ 173
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
V+ D F + Y+ A + TA L +G+ IHA++ R G
Sbjct: 174 --VESDRFT-----YTYVL-------KACVASECTA----DHLTKGKEIHAHLTRRGYNS 215
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ + T ++DMYA+ GC++ A VF+ MP R+V +++++I+ A + ++ A+ F M
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 275
Query: 314 LE--GVVPN--------ESMSEIYGIEPGVQHYG---------------CLVDLLGRAGM 348
E PN ++ + + +E G +G LV + GR G
Sbjct: 276 TETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGK 335
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+ ++V M + D +L+++ VHG
Sbjct: 336 LDVGQRVFDRMH-DRDVVSWNSLISSYGVHG 365
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 250/469 (53%), Gaps = 40/469 (8%)
Query: 21 FAVGKIIGF---CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
F ++GF CS +L YR+F + R WN+MI + + E A L
Sbjct: 110 FVQNSLLGFYANCSE----NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLD 165
Query: 78 QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137
+M + + T++ ++ + + + Q+ S++ +++G Y
Sbjct: 166 KMPERNIV----TWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISG----YVRIG 217
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
+ A+ +F + V+SWT++I+GYA +G + A +F+ MP KN VSW+AMI+GYV
Sbjct: 218 DVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVH 277
Query: 198 VDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
F +AL F++M + G RP+ ++ L+ACA LG+L+ G+WI++Y+ +N + L I
Sbjct: 278 NHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIP 337
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
LG A+IDM+AKCG +E A VF M R + +T+++SGLA + + AI LF +M LEG
Sbjct: 338 LGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEG 397
Query: 317 VVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
P++ M + +GI+P ++HYGC+VDLLGRAG LE A
Sbjct: 398 TKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEA 457
Query: 353 KKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412
+ M ++P+ + LL C++HG+ DL K E ++++ + L+SN+ AS
Sbjct: 458 VRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASF 517
Query: 413 EQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+W V R M + KVPGCS I+V V EF++ + +V +EI
Sbjct: 518 GRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEI 566
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 194/454 (42%), Gaps = 99/454 (21%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++++KQ + + G F + K+I SA ++ D
Sbjct: 15 IRELKQTHLQIFIHGLQHSDFMLPKLITVSSAFNLLD----------------------- 51
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+A E ++ ++ K ++ N++TF+F+L+ + L G + H ++++LG+
Sbjct: 52 --YATHKEALRVYSRMKALMVE---ANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFG 106
Query: 121 SYDFVLNGLLHLYATCN-CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S FV N LL YA C+ + A ++F+ RDVISW S+I+ Y G+I A + DK
Sbjct: 107 SSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDK 166
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE+N V+W++++ G + + A F M L N ++ +G +
Sbjct: 167 MPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPL----RNEVSWNSMISGYVRIGDVRAA 222
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ I + E ++ TA+I YA G +++A ++F+ MP ++V ++ ++ISG ++
Sbjct: 223 QSIFYQMP----EKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHN 278
Query: 300 DQSASAIELFMRMQLEG-VVPNESMSEIYGIEPGVQHYG--------------------- 337
+ A+ +F M + G P+++ + I H G
Sbjct: 279 HEFDQALCVFHHMLINGECRPDQTT--LISILSACAHLGSLEHGKWINSYIKKNKLHLSI 336
Query: 338 ----CLVDLLGRAGMLEAAKKVVREMP--------------------------------- 360
L+D+ + G +E AK+V M
Sbjct: 337 PLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLE 396
Query: 361 -IEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+PD+ + A+L+AC G V+ GK + +V+
Sbjct: 397 GTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQ 430
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/509 (30%), Positives = 251/509 (49%), Gaps = 71/509 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
+K++KQIQ++ + + + K I FC+++ + H ++LF + ++NTM
Sbjct: 39 LKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTM 98
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RG+A N+P++ +++ LR + L G H ++LG
Sbjct: 99 ARGYARLNDPLRMITHFRR---------------CLRLVSKVKALAEGKQLHCFAVKLGV 143
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+V+ L+++Y C G I +R++FDK
Sbjct: 144 SDNMYVVPTLINMYTAC-------------------------------GDIDASRRVFDK 172
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
+ E V+++A+I + + EAL F +Q G +P ++ L++CA LG+LD G
Sbjct: 173 IDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG 232
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RW+H YV + G + + + T +IDMYAKCG ++ A +VF MP RD A++++I A H
Sbjct: 233 RWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATH 292
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
AI + M+ E V P+E M+ YGI P ++H
Sbjct: 293 GDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKH 352
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG L+ A K + E+PI+P + LL+AC HG+V++GK +E + E
Sbjct: 353 YGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELD 412
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
H G +V+ SN+ A +W+ V +R+ M D K+PGCS IEV+ VV EF +GE +
Sbjct: 413 DSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVH 472
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ L + K LKS + D + V
Sbjct: 473 STSTTLHRALDELVKELKSAGYVPDTSLV 501
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 244/471 (51%), Gaps = 56/471 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ + L G ++ K++ F S + L + + LF + F+WN +IR +A
Sbjct: 78 KQLHARLCQLGIAYNLDLATKLVNFYSVCN--SLRNAHHLFDKIPKGNLFLWNVLIRAYA 135
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
A +LY QML P+N+T F+L+AC+ S + G + H +VIR GWE F
Sbjct: 136 WNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVF 195
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V L+ +YA C C+ AR +FD V+RD + W S++ YA++G + + +M K
Sbjct: 196 VGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAK- 254
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
G RP A +V +++ A + L GR IH
Sbjct: 255 ------------------------------GVRPTEATLVTVISSSADIACLPHGREIHG 284
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ R+G + + + TA+IDMYAKCG ++ AC +F+ + + V ++ ++I+G A H +
Sbjct: 285 FGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVE 344
Query: 305 AIELFMRMQLE-----------------GVVPNES------MSEIYGIEPGVQHYGCLVD 341
A++LF RM E G + +E M I P V+HY C+VD
Sbjct: 345 ALDLFERMMKEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVD 404
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLG G L+ A ++R+M + PD+ V GALLN+C+ HG+V+L + +E L+E D G
Sbjct: 405 LLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGN 464
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+V+L+N+YA + +W GV ++R+ M D ++K CS IEV V F+SG+
Sbjct: 465 YVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGD 515
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 43/266 (16%)
Query: 69 PIKAFALYKQMLRSDFLP------------NNYTFSFILRACADTSCLFVGLICHAQVIR 116
P+ + Q + +P N+Y ++ +L +C L G HA++ +
Sbjct: 27 PVSPYYFLHQSFATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQ 86
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG + L++ Y+ CN + A LFD ++ W LI YA +G
Sbjct: 87 LGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNG-------- 138
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
P + A+S L+ + LE+ G +P++ + L AC+ L +
Sbjct: 139 ----PHETAIS------------LYHQMLEY-------GLKPDNFTLPFVLKACSALSTI 175
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
+GR IH V R+G E D+ +G A++DMYAKCGC+ A VFD + +RD + S+++
Sbjct: 176 GEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAY 235
Query: 297 ANHDQSASAIELFMRMQLEGVVPNES 322
A + ++ L M +GV P E+
Sbjct: 236 AQNGHPDESLSLCCEMAAKGVRPTEA 261
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 158/491 (32%), Positives = 254/491 (51%), Gaps = 71/491 (14%)
Query: 4 IKQIQSH---LTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + +H L +S ++ P A+ C + D +LF + R T WN+M+
Sbjct: 136 VKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRD---AMKLFEKMSERDTVSWNSML 192
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G + E A L+ +M + D +
Sbjct: 193 GGLVKAGELRDARRLFDEMPQRDLI----------------------------------- 217
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S++ +L+G YA C M A +LF+ R+ +SW++++ GY+K+G + +AR MFDKM
Sbjct: 218 SWNTMLDG----YARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273
Query: 181 P--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
P KN V+W+ +I GY + L KEA + M G + + A ++ L AC G L
Sbjct: 274 PLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSL 333
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G IH+ + R+ + + + A++DMYAKCG ++ A VF+ +P +D+ ++ +++ GL
Sbjct: 334 GMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGV 393
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H AIELF RM+ EG+ P++ SM ++Y + P V+
Sbjct: 394 HGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVE 453
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGCLVDLLGR G L+ A KVV+ MP+EP+ + GALL ACR+H +VD+ KE +++LV+
Sbjct: 454 HYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKL 513
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
G + LLSNIYA+ E W GV +R M+ V K G S +E++ + EF +++
Sbjct: 514 DPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKS 573
Query: 455 NVLMEEIVLLL 465
+ ++I +L
Sbjct: 574 HPKSDQIYQML 584
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 190/394 (48%), Gaps = 28/394 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQ+ + + D K+I S +L+ R+F +Q + N++I
Sbjct: 32 LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLA--VRVFNQVQEPNVHLCNSLI 89
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R A+ ++P +AF ++ +M R +N+T+ F+L+AC+ S L V + H + +LG
Sbjct: 90 RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLS 149
Query: 121 SYDFVLNGLLHLYATCNCM--DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
S +V N L+ Y+ C + A KLF+ RD +SW S++ G K+G++ AR++FD
Sbjct: 150 SDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFD 209
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP+++ +SW+ M++GY + +A E F M P + + + A D
Sbjct: 210 EMPQRDLISWNTMLDGYARCREMSKAFELFEKM------PERNTVSWSTMVMGYSKAGDM 263
Query: 239 GRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDV-FAYTSLISGL 296
D+ + +++ T II YA+ G ++ A + D M + F ++IS L
Sbjct: 264 -EMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISIL 322
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESM-SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
A +S L + M++ ++ ++ S Y + L+D+ + G L+ A V
Sbjct: 323 AACTESGL---LSLGMRIHSILKRSNLGSNAYVL-------NALLDMYAKCGNLKKAFDV 372
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
++P + D +L+ VHG GKE +E
Sbjct: 373 FNDIP-KKDLVSWNTMLHGLGVHGH---GKEAIE 402
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 254/489 (51%), Gaps = 63/489 (12%)
Query: 3 QIKQIQSHLTVSGTLW-DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+++Q S ++V LW D + ++ S GD ++F + R W +I
Sbjct: 127 EVRQFHS-VSVKTGLWCDIYVQNTLVHVYSIC--GDNVGAGKVFEDMLVRDVVSWTGLIS 183
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G+ + +A +L+ LR + PN TF IL AC L +G H V + +
Sbjct: 184 GYVKTGLFNEAISLF---LRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGE 240
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
V N +L +Y C+ ++ AR+MFD+MP
Sbjct: 241 ELVVCNAVLDMYMKCD-------------------------------SVTDARKMFDEMP 269
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
EK+ +SW++MI G VQ +E+L+ F+ MQ GF P+ + L+ACA LG LD GRW
Sbjct: 270 EKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRW 329
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H Y+D + I+ D+ +GT ++DMYAKCGCI+ A +F+ MP++++ + + I GLA +
Sbjct: 330 VHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGY 389
Query: 302 SASAIELFMRMQLEGVVP-------------------------NESMSEIYGIEPGVQHY 336
A++ F + G P NE S +Y + P ++HY
Sbjct: 390 GKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHY 449
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLL RAG++ A ++++ MP+ PD +LGALL++ +G+V +E ++SL
Sbjct: 450 GCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNVGFTQEMLKSLPNVEF 509
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
G++VLLSN+YA+ ++W V VRR M+ + K PG S+I VDG+ EF+ G+ ++
Sbjct: 510 QDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHEFLVGDNSHP 569
Query: 457 LMEEIVLLL 465
EEI +LL
Sbjct: 570 QSEEIYVLL 578
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 170/384 (44%), Gaps = 59/384 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWNTM 59
++ KQI +HL S + + V K F I D+ + + ++F N +
Sbjct: 22 LRSFKQIHAHLLTSALVTNDLVVTKAANFL-GKHITDVHYPCNFLKQFDWSLSSFPCNLL 80
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I G+A P A +Y+ +R+ F+P+ YTF +L++CA S + H+ ++ G
Sbjct: 81 ISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTGL 140
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+V N L+H+Y+ C A K+F+ + RDV
Sbjct: 141 WCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDV------------------------- 175
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
VSW+ +I+GYV+ LF EA+ F M + PN V L AC LG L+ G
Sbjct: 176 ------VSWTGLISGYVKTGLFNEAISLFLRMNV---EPNVGTFVSILGACGKLGRLNLG 226
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH V + ++++ A++DMY KC + A +FD MP +D+ ++TS+I GL
Sbjct: 227 KGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQC 286
Query: 300 DQSASAIELFMRMQLEGVVPN-----------------------ESMSEIYGIEPGVQHY 336
+++LF +MQ G P+ + + I+ V
Sbjct: 287 QSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIG 346
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP 360
LVD+ + G ++ A+++ MP
Sbjct: 347 TTLVDMYAKCGCIDMAQRIFNGMP 370
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 141/423 (33%), Positives = 225/423 (53%), Gaps = 60/423 (14%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG---------- 128
+L LP++ + SF L C+ V + H+ +RLG +V+N
Sbjct: 62 LLNHRLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAAD 121
Query: 129 -----------------------LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYA 165
++ +A ++ AR FD ++V+SW +++ YA
Sbjct: 122 VASAERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYA 181
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++G + AR++FD+MP +NA +W +MI G +Q D +EAL F+ M CG PN +V
Sbjct: 182 RAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVS 241
Query: 226 ALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
++AC L ++ G W+H Y +R NG + +L TAI+DMY KCG I A VF +MP
Sbjct: 242 TVSACTQLRWMEHGTWVHGYAERELNG-AMSAVLATAIVDMYGKCGSIRDAVRVFAAMPV 300
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------------------- 321
R+++++ S+I+GLA + A+ LF +MQL GV PN+
Sbjct: 301 RNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWL 360
Query: 322 --SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
M +GI+P +HYG +VDLLGR+G + A V+ MP+EP + GAL AC++HG
Sbjct: 361 FYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHG 420
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+V+LG+E + L+E H ++LLSNIYA++ +W+ + VRR ++D +V K G +++
Sbjct: 421 EVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
Query: 440 EVD 442
D
Sbjct: 481 GND 483
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 31/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +LF + R W +MI G + + +A ++ M+ +PN +
Sbjct: 184 GMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTV 243
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + G H R LNG + +
Sbjct: 244 SACTQLRWMEHGTWVHGYAER--------ELNGAM----------------------SAV 273
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T++++ Y K G I A ++F MP +N SW++MI G ++AL F MQL G
Sbjct: 274 LATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAG 333
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
RPN +G L+AC+ G +D+GRW+ + V+ GI+ ++D+ + G + A
Sbjct: 334 VRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREA 393
Query: 275 CSVFDSMP 282
SMP
Sbjct: 394 VDFVKSMP 401
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 161/509 (31%), Positives = 259/509 (50%), Gaps = 33/509 (6%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
QI ++ S D F +I F S G + R+F ++ + WN +I + +
Sbjct: 177 QIHGLISKSKYSLDVFMGSGLIDF--YSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQ 234
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
I+A + +M F P+ T + ++ ACA + G+ HA+V++ D +
Sbjct: 235 NGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLI 294
Query: 126 L-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L N L+ +YA C ++ AR +FD R+ +S T++++GYAKS + AR MF + +K+
Sbjct: 295 LGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKD 354
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+A+I GY Q +EAL F ++ P H L A A L L+ GR H+
Sbjct: 355 IVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHS 414
Query: 245 YVDRNGI------ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+V ++G E DI +G ++IDMY KCG +E VF++M +D ++ ++I G A
Sbjct: 415 HVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQ 474
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
+ A+ELF +M G P+ SM++ +G+ P
Sbjct: 475 NGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKD 534
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY C+VDLLGRAG LE AK ++ MP +PD V +LL+AC+VH ++ LGK E + E
Sbjct: 535 HYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEI 594
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
G +VLL+N+Y+ +W VR+ M V K PGCS I++ V F+ ++
Sbjct: 595 DPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKR 654
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
+ +EI +L + KH++ + D ++
Sbjct: 655 HPQKKEIYSILKLLTKHMRQAGYVPDASD 683
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 166/351 (47%), Gaps = 45/351 (12%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
LF + + WN+MI GFA+ + +A + +M R DF+ N+Y+F L AC+
Sbjct: 112 LFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKD 171
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L +G H + + + F+ +GL+ Y+ C + AR++FD ++V+SW LI
Sbjct: 172 LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITC 231
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
Y ++G EALE F M GF+P+ +
Sbjct: 232 YEQNGPAI-------------------------------EALEAFGRMTELGFKPDEVTL 260
Query: 224 VGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
++ACA L A +G IHA V + + D+ILG A++DMYAKCG + A VFD MP
Sbjct: 261 ASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342
R+ + T+++SG A +A +F ++ + +V ++ G G +
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALI------AGYTQNGENEEA 374
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
LG ML+ RE + P +Y G LLNA D++LG++ +V+
Sbjct: 375 LGLFRMLK------RE-SVCPTHYTFGNLLNASANLADLELGRQAHSHVVK 418
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 144/303 (47%), Gaps = 24/303 (7%)
Query: 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
F ++ F+ +L C H ++I+ + F+ N L+ +Y C +D AR
Sbjct: 20 FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K+FD R+V S+ S+I+ + G + + +F MPEK+ SW++MI G+ Q D F+E
Sbjct: 80 KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
AL+ F M F N L+AC+ L L G IH + ++ LD+ +G+ +ID
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID 199
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-- 321
Y+KCG + A VFD M ++V ++ LI+ + + A+E F RM G P+E
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVT 259
Query: 322 ------SMSEIYGIEPGVQHYG----------------CLVDLLGRAGMLEAAKKVVREM 359
+ + + + GVQ + LVD+ + G + A+ V M
Sbjct: 260 LASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRM 319
Query: 360 PIE 362
P+
Sbjct: 320 PVR 322
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 156/478 (32%), Positives = 258/478 (53%), Gaps = 59/478 (12%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+ Q+ +H+ VSG + K++ A+ G +S+ ++F+ + +F++ ++I+
Sbjct: 28 LHQVHAHIIVSGYGRSRSLLTKLLNLACAA--GSISYTRQIFLAVPNPDSFLFTSLIKST 85
Query: 64 AEK-NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ N I + Y +M+ S+ P+NYTF+ ++++CAD S L G + H V+ G+
Sbjct: 86 SKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGF--- 142
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
GL DV +L+ Y K G + AR++FDK+ E
Sbjct: 143 -----GL-----------------------DVYVQAALVALYGKCGDLINARKVFDKIRE 174
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ V+W++MI+GY Q KEA+ F+ M+ G P+ A V L+ACA LGA G W+
Sbjct: 175 RSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWV 234
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H Y+ NG++L+++LGT++I+MY +CG + A VFDSM R+V A+T++ISG +
Sbjct: 235 HEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYG 294
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
+ A+ELF M+ G+ PN S+ E Y + PGV+H C
Sbjct: 295 SQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVC 354
Query: 339 LVDLLGRAGMLEAAKKVVR-EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
LVD+LGRAG+L+ A ++ E+P P +L A+L AC++H + DLG + E L+ +
Sbjct: 355 LVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPE 414
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ +V+LSNIYA + + VE VR M ++K G S +EVD F G++++
Sbjct: 415 NPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSH 472
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 47/339 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K + + H+ V G D + ++ GDL + ++F ++ R+ WN+MI
Sbjct: 127 LKHGRVVHGHVLVHGFGLDVYVQAALVAL--YGKCGDLINARKVFDKIRERSIVAWNSMI 184
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+ + +A L+ +M + P++ TF +L ACA +G H ++ G +
Sbjct: 185 SGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLD 244
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ L+++Y C + AR++FD R+V++WT++I+GY +G S
Sbjct: 245 LNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGS--------- 295
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+A+E F+ M+ G PN V L+ACA G +++GR
Sbjct: 296 ----------------------QAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGR 333
Query: 241 WIHAYVDRN-----GIELDIILGTAIIDMYAKCGCIETACS-VFDSMPNRDVFAYTSLIS 294
+ A + G+E ++ L +DM + G ++ A + + + +P A + +
Sbjct: 334 RLFASIREEYHLVPGVEHNVCL----VDMLGRAGLLDEAYNFIKEEIPENPAPAILTAML 389
Query: 295 GL----ANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329
G N D A E + + E +S IY +
Sbjct: 390 GACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYAL 428
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 232/441 (52%), Gaps = 69/441 (15%)
Query: 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML 80
A + GF S D + R+F +Q FI+N MIRG + P +AF Y Q
Sbjct: 5 LASSGVFGFLSLID-----YASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQ 59
Query: 81 RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140
R LP+N TF F++++C C+ +G H +I+ G+E +V N L+H+
Sbjct: 60 RQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHM-------- 111
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
G+ K G + AR++FD+MPEKN V+WS MI+GY Q +
Sbjct: 112 ----------------------GFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNH 149
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
F +A+E F +Q G R N V +NG+ L++ILGTA
Sbjct: 150 FDKAVELFKVLQSQGVRANET----------------------VMVIKNGMTLNLILGTA 187
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++DMYA+CG I+ A VF+ +P RD ++T+LI+GLA H S +++ F M G+ P
Sbjct: 188 LVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPR 247
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
+ + ++ G+LE A++ V +MP++P+ V GALL ACR+H +
Sbjct: 248 DIT------------FTAVLSACSHGGLLEEAERFVLKMPVKPNAPVWGALLGACRIHKN 295
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
++G+ + L++ H G +VLLSNIYA+ ++W V ++R+ M+ ++K PG SLIE
Sbjct: 296 AEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIE 355
Query: 441 VDGVVCEFVSGERTNVLMEEI 461
+DG V +F G+ ++ M++I
Sbjct: 356 LDGRVHKFTIGDSSHPEMDKI 376
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 224/415 (53%), Gaps = 58/415 (13%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY------------ 133
P++ + SF L +C C + + H+ +RLG +++N + Y
Sbjct: 74 PDHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAERL 133
Query: 134 ---------------------ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
A ++ AR FD R+V+SW +++ YA +G +S
Sbjct: 134 FSDTSKDVADVVTWTTMVAGHARAGDVERARWFFDAMPERNVVSWNAMLGAYASAGMLSE 193
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR++FD M +NA +WS+M+ G VQ D +EAL F+ M G PN + +V ++ACA
Sbjct: 194 ARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQ 253
Query: 233 LGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
L +L+ G W+HAYV R + +IL TAI+DMY KCGCI A VF +MP R+++++ S
Sbjct: 254 LRSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWNS 313
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIY 327
+I+GLA + + A+ LF +MQ+ GV PN+ M +
Sbjct: 314 MITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRMVNDF 373
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GI+P +HYG +VDLLGRAG+++ A V+ MP+EP + GAL AC +HG+V+LG+E
Sbjct: 374 GIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGLWGALAGACNIHGEVELGEEI 433
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+ L+E H ++LLSNIY ++ +W + VRR +++ +V K G +++ D
Sbjct: 434 AKKLIELEPRHGSRYILLSNIYGTSSRWEDMATVRRLIKERKVSKGTGNAVVGND 488
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 64/280 (22%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFA------------------------------- 64
GD+ F + R WN M+ +A
Sbjct: 158 GDVERARWFFDAMPERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLV 217
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + +A ++ M+ +PN ++ ACA L G+ HA V R S
Sbjct: 218 QSDHCEEALRVFSDMVARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSV 277
Query: 125 VL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+L ++ +Y C C+ A ++F R++ SW S+I G A +G R+M
Sbjct: 278 ILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNG-----REM------- 325
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI- 242
+AL F MQ+ G +PN +G L AC+ G +D+GRW+
Sbjct: 326 -------------------QALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLF 366
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ V+ GI+ ++D+ + G ++ A +MP
Sbjct: 367 NRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMP 406
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 257/496 (51%), Gaps = 59/496 (11%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRL-FVCLQYRTTFIWNTMIRGFA 64
+I + + VSG D F +++ + S +LS+G L F C + T WN +IRG++
Sbjct: 48 EIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYS 107
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ P +A +L+ +M R PNN TF F+L+ACA + L G HA I+ G + +
Sbjct: 108 SSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVY 167
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N L++ Y +C ++S AR++FD+M E+
Sbjct: 168 VRNTLIYFYGSCK-------------------------------RMSGARKVFDEMTERT 196
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+A+I V+ F EA+++F M GF P+ +V L+ACA LG L GRW+H+
Sbjct: 197 LVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHS 256
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
V G+ L++ LGTA +DMYAK G + A VF+ + + V+ ++++I GLA H +
Sbjct: 257 QVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANE 316
Query: 305 AIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCLV 340
AIELF M +VPN M +YGI+P + HYG +V
Sbjct: 317 AIELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMV 376
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR---VHGDVDLGKETVESLVERSLD 397
D+LGRAG ++ A +++ MP+EPD V LL+AC V+G ++ +E + L+E
Sbjct: 377 DVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPK 436
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
G V+++N +A W RR M+D ++K+ G S IE+ G + +F SG +
Sbjct: 437 RGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIELGGSLRKFFSGFDSRAA 496
Query: 458 MEEIVLLLFGIDKHLK 473
+ I LL G++ H++
Sbjct: 497 PDGIYDLLDGLNLHMQ 512
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 155/445 (34%), Positives = 243/445 (54%), Gaps = 31/445 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP--NNYTFSFILRACADTS----CL 104
R W + I A + + A A M+ S P N+ T +L ACAD+
Sbjct: 30 RDVVSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACADSPSSPLAS 89
Query: 105 FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY 164
+ L HA+ ++L + S+ + L Y A +LFD R V+++ ++I+G
Sbjct: 90 PLALTLHARALKL-FPSHLLLSTCLARFYLASRLPHLALQLFDSMPVRSVVTYNTMISGL 148
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
++G + A ++FD MP + VSW+A+I+G+V+ EA++ F M L G ++ +V
Sbjct: 149 MRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLV 208
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
++ACA +GAL G W+H V R +E ++ + ++IDMYA+CG + A VF S+ R
Sbjct: 209 AVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKR 268
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ 320
V ++ S+I G A + + AIELF M+ +G P+
Sbjct: 269 TVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYY 328
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD 380
+ M+ YG+ ++HYGC+VDLLGRAG L+ A VV MP+ P+ VLGALL CR HG+
Sbjct: 329 DLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHGN 388
Query: 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+D+ ++ ++ L E + +VLLSNIYA+ +W+G KVR M+ V+K PG S +E
Sbjct: 389 LDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSTVE 448
Query: 441 VDGVVCEFVSGERTNVLMEEIVLLL 465
+DG V EFVSG++++ L EI +L
Sbjct: 449 IDGDVHEFVSGDQSHPLAGEIGQML 473
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 151/388 (38%), Gaps = 90/388 (23%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
+ +K SHL +S L F AS + L+ +LF + R+ +NTMI
Sbjct: 98 RALKLFPSHLLLSTCL---------ARFYLASRLPHLA--LQLFDSMPVRSVVTYNTMIS 146
Query: 62 GFAEKNEPIKAFALYKQMLRSD----------FLPNNY---------------------T 90
G AF ++ M D F+ N T
Sbjct: 147 GLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYIT 206
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
++ ACA+ L +G+ H V+R E V N L+ +YA C ++ A ++F
Sbjct: 207 LVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIR 266
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R V+SW S+I G+A +G+ + +A+E F
Sbjct: 267 KRTVVSWNSMIVGFAANGRCT-------------------------------DAIELFEE 295
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M+ GF+P+ + G LTAC+ G + G R+ G+ + ++D+ + G
Sbjct: 296 MRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAG 355
Query: 270 CIETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328
++ A V ++MP R + +L++G H L M Q+ M ++
Sbjct: 356 RLDEAMHVVETMPMRPNEVVLGALLAGCRTHGN------LDMAEQM--------MQHLFE 401
Query: 329 IEP-GVQHYGCLVDLLGRAGMLEAAKKV 355
++P G +Y L ++ G + A KV
Sbjct: 402 LDPQGDANYVLLSNIYAAVGKWDGAGKV 429
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 31/207 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ ++F ++ RT WN+MI GFA A L+++M R F P+ T + +L
Sbjct: 253 GQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVL 312
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNG------------LLHLYATCNCMDPAR 143
AC+ HA + G YD + ++ L +D A
Sbjct: 313 TACS-----------HAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAM 361
Query: 144 KLFD-MSVNRDVISWTSLINGYAKSGQISIARQM----FDKMPEKNAVSWSAMINGYVQV 198
+ + M + + + +L+ G G + +A QM F+ P+ +A ++ + N Y V
Sbjct: 362 HVVETMPMRPNEVVLGALLAGCRTHGNLDMAEQMMQHLFELDPQGDA-NYVLLSNIYAAV 420
Query: 199 DLFKEALEHFNYMQLCGF--RPNHAGI 223
+ A + + M+ G RP H+ +
Sbjct: 421 GKWDGAGKVRSLMKARGVKKRPGHSTV 447
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 243/438 (55%), Gaps = 37/438 (8%)
Query: 86 PNNYTFSFILRACAD--TSCLFVGLICHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPA 142
PN+ TF +L C D + +G + H +LG + ++ V +L +Y+ A
Sbjct: 16 PNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFRKA 75
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
R +FD +++ ++W ++I+GY +SGQ++ A ++FD+M ++ +SW+AM+NG+V+ +
Sbjct: 76 RLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHE 135
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
EAL F MQ+ G +P++ I+ AL AC LGAL G WIH YV + ++ + ++I
Sbjct: 136 EALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLI 195
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-- 320
D+Y +CGC+E A VFD M R V ++ S+I G A + + ++ F +MQ EG P+
Sbjct: 196 DLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAV 255
Query: 321 ----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
++M Y I P ++HYGC+VDL RAG LE A KVV+
Sbjct: 256 TFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQS 315
Query: 359 MPIEPDNYVLGALLNACRVHG-DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP++P+ V+G+LL AC+ HG + L + ++ L + ++ +V+LSN+YA+ +W G
Sbjct: 316 MPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEG 375
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI--VLLLFGIDKHLKSL 475
K+RR M+ ++K PG S IE+D F++G+ +V I +L L D L+
Sbjct: 376 ASKMRRKMKGLGLKKQPGFSSIEIDECTHVFMAGDSAHVETANIREILGLMSSDLRLQ-- 433
Query: 476 CFFDDGNEVATEGGSLLD 493
G V T G LL+
Sbjct: 434 -----GCVVETLAGDLLN 446
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 140/327 (42%), Gaps = 45/327 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ +LF + R W M+ GF +K +A + +++M S P+ L
Sbjct: 101 GQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAAL 160
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H V+ +++ V N L+ LY C C++ AR++FD R V+
Sbjct: 161 AACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 220
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G E+L +F MQ G
Sbjct: 221 SWNSVIVGFAANGNA-------------------------------HESLFYFRKMQEEG 249
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F+P+ GALTAC+ +G +++G R+ I I I+D+Y++ G +E A
Sbjct: 250 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDA 309
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
V SMP + + SL++ NH + E M+ + V + S
Sbjct: 310 LKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHS----------- 358
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMP 360
+Y L ++ G E A K+ R+M
Sbjct: 359 -NYVILSNMYAADGKWEGASKMRRKMK 384
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 234/476 (49%), Gaps = 55/476 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G +S +F + +RT WN+MI G+ + + A ++++ML P N T
Sbjct: 177 SKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVM 236
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L ACAD L G H V +L +S
Sbjct: 237 GALHACADLGDLERGKFVHKLVDQLKLDS------------------------------- 265
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV SLI+ Y+K ++ IA +F + K VSW+AMI GY Q EAL F MQ
Sbjct: 266 DVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQ 325
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+P+ +V + A A L Q +WIH V R ++ ++ + TA++DMYAKCG I
Sbjct: 326 SRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIH 385
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
TA +FD M R V + ++I G H +++ELF M+ + PN
Sbjct: 386 TARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACS 445
Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
ESM + YGIEP + HYG +VDLLGRAG L A +++MPI+P V
Sbjct: 446 HSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVY 505
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
GA+L AC++H +VDLG++ + + + D G HVLL+NIYA+ W V KVR ME +
Sbjct: 506 GAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKS 565
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++K PGCSL+E+ V F SG ++ ++I L + +++ + D N +
Sbjct: 566 GLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI 621
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/485 (25%), Positives = 220/485 (45%), Gaps = 98/485 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K+ K+I + SG W+ FA+ ++ + I D Y +F + R WNTM
Sbjct: 46 LKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQIND---AYNMFDRMPERDLVCWNTM 102
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I G+A+ A L +M P++ T IL A ADT L +G+ H V+R G+
Sbjct: 103 ISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGF 162
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
ES L ++S T+L++ Y+K G +SIAR +FD
Sbjct: 163 ES-----------------------LVNVS--------TALVDMYSKCGSVSIARVIFDG 191
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M + VSW++MI+GYVQ + A+ F M G +P + ++GAL ACA LG L++G
Sbjct: 192 MDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG 251
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+++H VD+ ++ D+ + ++I MY+KC ++ A +F ++ N+ + ++ ++I G A +
Sbjct: 252 KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQN 311
Query: 300 DQSASAIELFMRMQLEGVVPNE--------SMSE---------IYG------IEPGVQHY 336
A+ F MQ + P+ +++E I+G ++ V
Sbjct: 312 GCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVM 371
Query: 337 GCLVDLLGRAGMLEAAKKV----------------------------------VREMPIE 362
LVD+ + G + A+K+ +++ I+
Sbjct: 372 TALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIK 431
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESL-----VERSLDHEGVHV-LLSNIYASTEQWN 416
P++ L+AC G V+ G ES+ +E ++DH G V LL + W+
Sbjct: 432 PNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWD 491
Query: 417 GVEKV 421
++K+
Sbjct: 492 FIQKM 496
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 158/341 (46%), Gaps = 46/341 (13%)
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
M++G+A+ + A + + +M P Y F+++L+ C D S L G H VI G
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ F + G++++YA C ++ A +FD RD++ W ++I+GYA++G +A +
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M E+ G RP+ IV L A A L
Sbjct: 121 RMSEE-------------------------------GHRPDSITIVSILPAVADTRLLRI 149
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G +H YV R G E + + TA++DMY+KCG + A +FD M +R V ++ S+I G
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK---KV 355
+ A+ +F +M EGV P G H DL G LE K K+
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVTVM------GALH--ACADL----GDLERGKFVHKL 257
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
V ++ ++ D V+ +L++ VD+ + ++L ++L
Sbjct: 258 VDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 298
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 236/433 (54%), Gaps = 28/433 (6%)
Query: 76 YKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT 135
Y +M L +N+T F+L++CAD S + +G H Q +R+G E +V L+ +Y
Sbjct: 95 YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154
Query: 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY 195
C + ARKLFD + RD+ SW +LI GY K G+I +A +F++M +N VSW+AMI+GY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214
Query: 196 VQVDLFKEALEHFNYMQLCG--FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
Q ++AL F+ M G +PN IV L ACA AL++GR IH + + G+ L
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMR 311
+ + TA+ MYAKC + A FD + +++ A+ ++I+ A+H A+ +F
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334
Query: 312 MQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAG 347
M GV P+ M I+ +EP V+HY C+VDLLGRAG
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
L AK+++ +MP++ V GALL ACR H ++++ + L D+ G +VLLSN
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 454
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
+YA W V+K+R ++ ++K PGCS IE++G F+ ++++ +EI L
Sbjct: 455 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEA 514
Query: 468 IDKHLKSLCFFDD 480
+ + +K + D
Sbjct: 515 LPEKIKMAGYIPD 527
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSF 93
G++ LF +++R W MI G+ + +A L+ +ML+ S+ PN T
Sbjct: 187 GEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVS 246
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN-- 151
+L ACA ++ L G H +G V L +YA C + AR FDM
Sbjct: 247 VLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNG 306
Query: 152 RDVISWTSLINGYAKSG----QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
+++I+W ++I YA G +SI M + +AV++ +++G L L H
Sbjct: 307 KNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNH 366
Query: 208 FNYM 211
FN M
Sbjct: 367 FNDM 370
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%)
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
LE + M G ++ + L +CA L + GR +H R G+E D +G ++IDM
Sbjct: 92 LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324
Y KCG I A +FD M RD+ ++ +LI+G + A +LF RM+ +V +M
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211
Query: 325 EIY 327
Y
Sbjct: 212 SGY 214
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 257/496 (51%), Gaps = 59/496 (11%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRL-FVCLQYRTTFIWNTMIRGFA 64
+I + + VSG D F +++ + S +LS+G L F C + T WN +IRG++
Sbjct: 48 EIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYS 107
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ P +A +L+ +M R PNN TF F+L+ACA + L G HA I+ G + +
Sbjct: 108 SSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVY 167
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N L++ Y +C ++S AR++FD+M E+
Sbjct: 168 VRNTLINFYGSCK-------------------------------RMSGARKVFDEMTERT 196
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
VSW+A+I V+ F EA+++F M GF P+ +V L+ACA LG L GRW+H+
Sbjct: 197 LVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHS 256
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
V G+ L++ LGTA +DMYAK G + A VF+ + + V+ ++++I GLA H +
Sbjct: 257 QVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANE 316
Query: 305 AIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGCLV 340
AIELF M +VPN M +YGI+P + HYG +V
Sbjct: 317 AIELFTNMTSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMV 376
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR---VHGDVDLGKETVESLVERSLD 397
D+LGRAG ++ A +++ MP+EPD V LL+AC V+G ++ +E + L+E
Sbjct: 377 DVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPK 436
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
G V+++N +A W RR M+D ++K+ G S IE+ G + +F SG +
Sbjct: 437 RGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIELGGSLRKFFSGFDSRAA 496
Query: 458 MEEIVLLLFGIDKHLK 473
+ I LL G++ H++
Sbjct: 497 PDGIYDLLDGLNLHMQ 512
>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 147/481 (30%), Positives = 258/481 (53%), Gaps = 35/481 (7%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQY----RTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
I+G+C + GD+S LF C+ R WN++I G+ +AF++++ ML
Sbjct: 370 IVGYCES---GDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLM 426
Query: 82 SDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140
+ + P+++T +L ACADT L G HAQ I G +S FV L+ +Y+ C +
Sbjct: 427 EEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLT 486
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYV 196
A+ FD + +DV +W +LI+GY +S QI + + +KM N +W++++ G V
Sbjct: 487 AAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLV 546
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
+ ++ F+ MQ+ RP+ + L AC+ L L++G+ HA+ + G + D+
Sbjct: 547 ENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVH 606
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
+G A++DMYAKCG ++ A +D + N ++ ++ ++++ A H I LF M G
Sbjct: 607 IGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALG 666
Query: 317 VVPNE-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
+P+ + Y ++P ++HY +VDLL R+G L A
Sbjct: 667 FIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAY 726
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
+++++MP+E D+ + GALL C HG+++LG+ E L+E ++ G +VLL+N++A
Sbjct: 727 ELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYAR 786
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+W + +VR M+D + K PGCS IE + F++ +R++ EEI L + H+K
Sbjct: 787 RWTDLARVRGMMKDRGMHKSPGCSWIEDKNEIHSFLACDRSHKRAEEIYATLDYLALHMK 846
Query: 474 S 474
+
Sbjct: 847 T 847
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 186/404 (46%), Gaps = 23/404 (5%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ +H +G D F K++ + G L LF + R W ++ +
Sbjct: 79 KQVHAHTIKTGFDADGFIDTKLLQM--YARCGLLKDADFLFETMPMRNLHSWKAILSVYL 136
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +AF L++ + + + F + +AC+ + +G H VI+ + +
Sbjct: 137 DHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIY 196
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE-- 182
V N L+ +Y C +D A+K+ RD ++W S+I A +G + A + +KM
Sbjct: 197 VSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLD 256
Query: 183 ---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
N VSWSA+I G+ Q +EA+E MQ+ G PN + G L ACA L LD G
Sbjct: 257 YSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLG 316
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ +H Y+ R+ + ++ A++D+Y +CG + A +F ++V + ++I G
Sbjct: 317 KQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCES 376
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA----KKV 355
+ A ELF M ++ GIE G+ + ++ R M + A + +
Sbjct: 377 GDVSKAKELFDCM------------DVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNM 424
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
+ E IEPD++ LG++L AC + GKE + + L +
Sbjct: 425 LMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSD 468
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 48/303 (15%)
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
N ++ +L +C C +G HA I+ G+++ F+ LL +YA C + A LF
Sbjct: 61 NTSKYASVLDSC---KCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLF 117
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
+ R++ SW ++++ Y G LF+EA
Sbjct: 118 ETMPMRNLHSWKAILSVYLDHG-------------------------------LFEEAFL 146
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F +Q G + AC+ LG+++ GR +H V + L+I + A+IDMY
Sbjct: 147 LFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYG 206
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326
KCG ++ A V MP RD + S+I+ A + A+E +M+ S
Sbjct: 207 KCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMK----------SLD 256
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHGDVDL 383
Y + P V + ++ + G E A +++ M +E P+ L +L AC +DL
Sbjct: 257 YSM-PNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDL 315
Query: 384 GKE 386
GK+
Sbjct: 316 GKQ 318
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 26/189 (13%)
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
G+ +HA+ + G + D + T ++ MYA+CG ++ A +F++MP R++ ++ +++S +
Sbjct: 78 GKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLD 137
Query: 299 HDQSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHYG------------- 337
H A LF +Q +GV + ++ S + +E G Q +G
Sbjct: 138 HGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYV 197
Query: 338 --CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
L+D+ G+ G L+ AKKV+ +MP E D+ +++ AC +G V E +E + +S
Sbjct: 198 SNALIDMYGKCGSLDDAKKVLVKMP-ERDSVTWNSVITACAANGMVYEALEFLEKM--KS 254
Query: 396 LDHEGVHVL 404
LD+ +V+
Sbjct: 255 LDYSMPNVV 263
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 251/492 (51%), Gaps = 52/492 (10%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K IK I + + + G +PF K++G + ++ ++F CL R F+WNT+I+
Sbjct: 21 KTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQ 80
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
G+A ++A +Y+ M S N YTF F+L+AC G H V++ G +
Sbjct: 81 GYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDL 140
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV N L+ YA CN + +R++FDM +D+++W S+I+GYA +G A +F M
Sbjct: 141 DLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNML 200
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+ VQ D + P+ A +V L ACA A+ +G W
Sbjct: 201 Q-------------VQGDTV--------------YAPDSATLVAILPACAQAAAIQEGLW 233
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
IH+YV ++GIELD LG+ +I MYA CG + +A VFD + ++++ + ++I H
Sbjct: 234 IHSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGH 293
Query: 302 SASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYG 337
+ A+++F + G+ P+ E M + YG+E +HY
Sbjct: 294 ADEALKMFSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGD-YGVEKSSEHYA 352
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+VD+LGRAG L A + V+ MP++P V GALL ACR+H +++L +E E L D
Sbjct: 353 SVVDILGRAGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPD 412
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ G +++L +Y +W ++R+ +++ +RK GCS IE+ V+ F ++++
Sbjct: 413 NAGRYIILVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIELGCVLHTFGVEDKSHPF 472
Query: 458 MEEIVLLLFGID 469
++I L +D
Sbjct: 473 KDQIFDTLERLD 484
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 250/460 (54%), Gaps = 36/460 (7%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLF-VCLQYRTTFIWNTMIRGFA 64
Q+ + G L D F V ++ +A D +F C WNTM+ G+
Sbjct: 100 QVHAQAVRRGLLVDVFVVNTLLAMYAA--FRDTRSMREVFDSCAGVADLVTWNTMLGGYV 157
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ E +A +++QM + N ++S ++ A A L V ++ +G +
Sbjct: 158 KCGEIGEARRVFEQMPQR----NGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSW 213
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
N ++ +A + ARK+FD R+++SW +++ GYA +G+++ AR++FD+MPEK+
Sbjct: 214 --NSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKD 271
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQGRWIH 243
VSW+ MI+GY Q + E LE F MQ PN +V L+ACA L AL++GRW H
Sbjct: 272 VVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAH 331
Query: 244 AYVDRNGIELD--IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
A++D++ + LD LG A+IDMY+KCG + A +F S+ ++V A+ +LI+GLA +
Sbjct: 332 AFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGD 391
Query: 302 SASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYG 337
S+I++F +M+ G PN +SM+ G++P +HYG
Sbjct: 392 VRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYG 451
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VD+LGRAG+LE A++++R MP+ PD +LGALL ACR+H VD+ ++ S
Sbjct: 452 CMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQ 511
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
G HVL+S+IYA+ +W R ++ + K+ G S
Sbjct: 512 QSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 137/272 (50%), Gaps = 9/272 (3%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL-FVGLICH 111
TF+ N +IR A P AFA + +LRS P+ +TF +L++ + + G H
Sbjct: 43 TFLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVH 102
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN-RDVISWTSLINGYAKSGQI 170
AQ +R G FV+N LL +YA R++FD D+++W +++ GY K G+I
Sbjct: 103 AQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEI 162
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
AR++F++MP++N VSWSAM+ Y A E F+ M G N +T
Sbjct: 163 GEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIG--RNVVSWNSMITGF 220
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
A G L R + D + +++ ++ YA G + A +FD MP +DV ++T
Sbjct: 221 ARHGLLPLARKM---FDEMPVR-NLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWT 276
Query: 291 SLISGLANHDQSASAIELFMRMQLEG-VVPNE 321
+ISG A +ELF MQ E V+PNE
Sbjct: 277 CMISGYAQARCYTETLELFRAMQSESNVLPNE 308
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 156/502 (31%), Positives = 252/502 (50%), Gaps = 67/502 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK + QI+ H F G ++ FC++S +G+L+H L + WN +I
Sbjct: 41 MKHLFQIRGH---------GFIAGPLLRFCASSPLGNLNHARVLLSGSEKSEVSSWNDLI 91
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +A ++ P +A Y +M P+ TF +L+ACA S G V++ G +
Sbjct: 92 RSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFNEGRKIQVDVMKHGLD 151
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N ++H Y +C +I AR+MFD+M
Sbjct: 152 CNVYVQNTMIHFYGSCK-------------------------------RIRDARRMFDEM 180
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ VSW+A+++ V + ++ F M+ GF P+ +V L+AC+ LG L GR
Sbjct: 181 SYRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGR 240
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H+ V G+ ++ LGTA++DMYAKCG + A VF M R+V+ ++++I GLA H
Sbjct: 241 WVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHG 300
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+ELF +M+ + PN M ++GIEP + HY
Sbjct: 301 FAKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHY 360
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD---LGKETVESLVE 393
G +VD+L RAG L+ A + MP+E D V LL+AC +HG D +G + + L+E
Sbjct: 361 GAMVDILSRAGRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLE 420
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G V+++N+YA +W+ VRR M+D ++K+ G S IEV G + F SG+
Sbjct: 421 LEPRRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGGSIHRFFSGDD 480
Query: 454 TNVLMEEIVLLLFGIDKHLKSL 475
+ E+++ LL G++ H+K++
Sbjct: 481 PQLDCEDVLQLLDGLNLHMKTV 502
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 170/522 (32%), Positives = 271/522 (51%), Gaps = 78/522 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
+ Q+KQ+ + + + P F +I+ F S + DL + +R+F ++ +F+WN
Sbjct: 39 ISQLKQLHAQTIRTTSSHHPNTFFLYSRILHF---SSLHDLRYAFRVFHQIENPNSFMWN 95
Query: 58 TMIRGFAEKNEPIK-AFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+IR A + + A ALY +ML + + + +TF F+L+ACA L G HAQ++
Sbjct: 96 ALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQIL 155
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+LG++S ++ N L+H Y A ++ A+
Sbjct: 156 KLGFDSDVYINNSLVHFY-------------------------------ATCDRLDFAKG 184
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+M E++ VSW+ +I+ +V+ F AL F MQ F P+ I ACA +G+
Sbjct: 185 VFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGS 243
Query: 236 LDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
L G W H ++ D + + D++L T+++DMY KCG +E A +F MP RDV ++ S
Sbjct: 244 LSLGMWAHVFLLKKFDADRVN-DVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNS 302
Query: 292 LISGLANHDQSASAIELFMRM-QLEGVVPN------------------------ESMSEI 326
+I G + H + A+A+E F M + E ++PN + M
Sbjct: 303 MILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTE 362
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I+P ++HYGCLVDLL RAG+++ A VV MP+ PD + +LL+AC + G E
Sbjct: 363 YKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDAC---CKQNAGVE 419
Query: 387 TVESLVERSLDHEG-----VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
E + R L+ EG V+VLLS +YAS +WN V VR+ M D V K PGCS IE+
Sbjct: 420 LSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEI 479
Query: 442 DGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
DGV EF +G+ ++ EEI L I++ ++ + + D ++
Sbjct: 480 DGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQ 521
>gi|449453704|ref|XP_004144596.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Cucumis sativus]
Length = 477
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 227/416 (54%), Gaps = 29/416 (6%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
T ++NT+IR + N P A LY QML PN +TF I+++ S L LI HA
Sbjct: 52 TLLYNTLIRAYLNFNRPRFALLLYTQMLSQQTKPNFHTFPSIIKSATICSSLLPKLI-HA 110
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++G + VL + YA + ARK+FD N ++++ S+++ + K+G +
Sbjct: 111 HAFKIGVLTDPVVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFVKNGDLGS 170
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACA 231
A MF MPE + VSW+++ING+ F EAL F+ M + G +PN A V L++ A
Sbjct: 171 AVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFHVMMMSGSVKPNEATYVSVLSSSA 230
Query: 232 FL---GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
L G L +G+ +HAY+ RN E + +GT +ID Y K G + A +VF+ M R+V
Sbjct: 231 NLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCARTVFNQMKKREVCT 290
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMS 324
+ ++IS A++ + A++LF M++EG+ PNE SM
Sbjct: 291 WNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSML 350
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ I P +HY C+VDLLG+AG+L A + + MP +PD VLGALL+AC++HG +LG
Sbjct: 351 YDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGALLSACKIHGATELG 410
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
E L+E H G +V L+++ A E+WN +RR M D ++K P S ++
Sbjct: 411 NEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARIQKTPAYSRVD 466
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 120/302 (39%), Gaps = 51/302 (16%)
Query: 26 IIGFCSASDI----GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
I+ F S D GDL +F + W ++I GF ++A + M+
Sbjct: 152 IVAFNSMLDAFVKNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFHVMMM 211
Query: 82 SDFL-PNNYTFSFILRACADTSCLFVGLIC-----HAQVIRLGWESYDFVLNGLLHLYAT 135
S + PN T+ +L + A+ G++C HA +IR E F+ GL+ Y
Sbjct: 212 SGSVKPNEATYVSVLSSSANLDA--EGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGK 269
Query: 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY 195
+ AR +F+ R+V +W ++I+ +A +G+ +
Sbjct: 270 MGLLGCARTVFNQMKKREVCTWNAMISSFASNGRET------------------------ 305
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
EAL+ F M++ G PN V LTACA + G + + + I
Sbjct: 306 -------EALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSML---YDFSI 355
Query: 256 ILGTA----IIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFM 310
+ T ++D+ K G + A +SMP + D +L+S H + E+
Sbjct: 356 VPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGALLSACKIHGATELGNEVGR 415
Query: 311 RM 312
R+
Sbjct: 416 RL 417
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 156/504 (30%), Positives = 253/504 (50%), Gaps = 57/504 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
++I S + G ++D +I + G + LF + + W MI G A
Sbjct: 466 REIHSRVVKDGFMFDISVQNALISM--YARCGSIKDARLLFNKMVRKDIISWTAMIGGLA 523
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +A A+++ M ++ PN T++ IL AC+ + L G H QVI G +
Sbjct: 524 KSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAH 583
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N L+++Y+ C G + ARQ+FD+M +++
Sbjct: 584 VANTLVNMYSMC-------------------------------GSVKDARQVFDRMTQRD 612
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+++AMI GY +L KEAL+ F+ +Q G +P+ + L ACA G+L+ + IH+
Sbjct: 613 IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHS 672
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
V ++G D LG A++ YAKCG A VFD M R+V ++ ++I G A H +
Sbjct: 673 LVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQD 732
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
++LF RM++EG+ P+ SMS +GI P ++HYGC+V
Sbjct: 733 VLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMV 792
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ + +++ MP + + + GALL ACR+HG+V + + ES ++ D+
Sbjct: 793 DLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAA 852
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
V+V LS++YA+ W+ K+R+ ME V K PG S IEV + FV+ +R++ E+
Sbjct: 853 VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEK 912
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEV 484
I L + +K + D V
Sbjct: 913 IYAELDKLTHAMKMEGYVPDTRSV 936
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 158/321 (49%), Gaps = 33/321 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K K + SH+ +G D AVG + A G ++F L R WNTMI
Sbjct: 361 LKWGKTVHSHILNAGHESD-LAVGTALVKMYAK-CGSYKDCRQVFEKLVNRDLIAWNTMI 418
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G AE +A +Y QM R +PN T+ +L AC + + L G H++V++ G+
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF- 477
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+FD+SV +LI+ YA+ G I AR +F+KM
Sbjct: 478 ------------------------MFDISVQ------NALISMYARCGSIKDARLLFNKM 507
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ +SW+AMI G + L EAL F MQ G +PN L AC+ ALD GR
Sbjct: 508 VRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGR 567
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH V G+ D + +++MY+ CG ++ A VFD M RD+ AY ++I G A H+
Sbjct: 568 RIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHN 627
Query: 301 QSASAIELFMRMQLEGVVPNE 321
A++LF R+Q EG+ P++
Sbjct: 628 LGKEALKLFDRLQEEGLKPDK 648
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 196/466 (42%), Gaps = 93/466 (19%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RTTFIWNTMIRG 62
+++ H+ T+ D + V +I G + +++ L + RT WN M+ G
Sbjct: 161 REVHEHIIQHCTVLDQYTVNALINM--YIQCGSIEEARQVWNKLNHTERTVHSWNAMVVG 218
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ + +A L ++M + T +L +C S L G H + ++
Sbjct: 219 YVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMK------ 272
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
AR LFD++V ++N YAK G I AR++FDKM
Sbjct: 273 -------------------ARLLFDVNVA------NCILNMYAKCGSIHEAREVFDKMET 307
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ VSW+ +I GY + A E F MQ G PN + L A + AL G+ +
Sbjct: 308 KSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTV 367
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H+++ G E D+ +GTA++ MYAKCG + VF+ + NRD+ A+ ++I GLA
Sbjct: 368 HSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNW 427
Query: 303 ASAIELFMRMQLEGVVPNESMSEIY---GIEPGVQHYG--------------------CL 339
A E++ +MQ EG++PN+ I + P H+G L
Sbjct: 428 EEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNAL 487
Query: 340 VDLLGRAGMLEAAK----KVVR------------------------------EMPIEPDN 365
+ + R G ++ A+ K+VR + ++P+
Sbjct: 488 ISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNR 547
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEG-VHVLLSNIYA 410
++LNAC +D G+ + ++E L + V L N+Y+
Sbjct: 548 VTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYS 593
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
A++ Y+Q G R N + L C + L GR +H ++ ++ LD A+I
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183
Query: 263 DMYAKCGCIETACSVFDSM--PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+MY +CG IE A V++ + R V ++ +++ G + A++L MQ G+
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 254/497 (51%), Gaps = 64/497 (12%)
Query: 20 PFAVGKIIGFCS---ASDIGDLSHGYRLFVCLQYRTTFIW-NTMIRGFAEKNEPI----K 71
P V +++ C+ A L++ ++F + + +W NT++RG+A +
Sbjct: 62 PAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEE 121
Query: 72 AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
A ++ +M+ P+ YTF +L+ACA G H ++ G +++V
Sbjct: 122 AARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVA----- 176
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+LIN YA+ G + AR MFD+M + VS++AM
Sbjct: 177 --------------------------PTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I V+ L EAL F MQ G +P ++ L+ACA LGAL+ GRWIH Y+ + +
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+ + + TA+IDMYAKCG +E A VF M +RD A++ ++ ANH AI +F
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEE 330
Query: 312 MQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ +G+ P+ +SM E YGI G++HYGC+ DLL R+G
Sbjct: 331 MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSG 389
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
LE A K + E+PI+P + LL+AC HGDVD+GK E ++E H G +V+ SN
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
+ A+T +W + VR+ M + V KVPGCS IE+D +V EF +G+ ++ +E ++
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDE 509
Query: 468 IDKHLKSLCFFDDGNEV 484
+ + LK + + + + V
Sbjct: 510 VIEQLKLVGYVPNTSHV 526
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 239/436 (54%), Gaps = 65/436 (14%)
Query: 46 VCLQYRTTFIWNTMIRGFAEKNEPI-KAFALYKQMLRSDFLPNNYTFSFILRACADTSCL 104
+ L+ R WN++IRG+A+ + I A+ L+ +M D +
Sbjct: 219 IPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLI------------------- 259
Query: 105 FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY 164
S++ +++G + C M+ A+ LFD NRD++SW ++I+GY
Sbjct: 260 ----------------SWNSMIDGCV----KCGRMEDAQGLFDRMPNRDIVSWANMIDGY 299
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGI 223
AK+G++ IAR +FD+MPE++ V+++AM+ GYVQ EAL F MQ G F ++A +
Sbjct: 300 AKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATL 359
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
+ AL+A A LG +D+G IH +++ G LD LG A+IDMY+KCG IE A VF+++
Sbjct: 360 LIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKE 419
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------------- 320
+ V + ++I GLA H A + M M+ V P+
Sbjct: 420 KSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMC 479
Query: 321 -ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
E M ++ +EP +QHYGC+VD+LGRAG +E AK V EMP EP++ + +LL+AC+ H
Sbjct: 480 FELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHE 539
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
++G+ E+L+ +VL SN+YA +WN V KVR M+ ++K+PGCS I
Sbjct: 540 SFNVGQPVAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWI 599
Query: 440 EVDGVVCEFVSGERTN 455
E++G V F ++++
Sbjct: 600 ELEGHVYAFFVQDKSH 615
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 193/414 (46%), Gaps = 33/414 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-------- 52
+ I QI + L +G + + F KII S S L R F+ ++
Sbjct: 28 LSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFAR-FIFFRHHAFEFDEKEE 86
Query: 53 -----TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
F+WN +I+ ++ ++P +A L ML + + +T S +L+AC+ + G
Sbjct: 87 EEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEG 146
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
+ H + +L + S F+ N L+ Y C C+ A ++FD RD +S+ S+I+GY K
Sbjct: 147 MQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKG 206
Query: 168 GQISIARQMFDKMP--EKNAVSWSAMINGYVQV-DLFKEALEHFNYMQLCGFRPNHAGIV 224
G+I +AR +FD +P E+N +SW+++I GY Q D A + F M ++ I
Sbjct: 207 GRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMID 266
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
G C G ++ + + + DI+ +ID YAK G ++ A S+FD MP R
Sbjct: 267 G----CVKCGRMEDAQGLFDRMPNR----DIVSWANMIDGYAKNGRVDIARSLFDEMPER 318
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG 344
DV AY +++ G + A+ +F MQ +G ++ + + + Q LG
Sbjct: 319 DVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQ--------LG 370
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
A + + E+ D + AL++ G ++ E++ E+S+DH
Sbjct: 371 HIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDH 424
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/512 (30%), Positives = 254/512 (49%), Gaps = 63/512 (12%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
++ H+ +G+ DPF K+IG SD+G + + ++F + RT ++WN + R
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGM--YSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC----LFVGLICHAQVIRLGWES 121
+ LY +M R + +T++++L+AC + C L G HA + R G+ S
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 215
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ +++ T+L++ YA+ G + A +F MP
Sbjct: 216 HVYIM-------------------------------TTLVDMYARFGCVDYASYVFGGMP 244
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYM--QLCGFRPNHAGIVGALTACAFLGALDQG 239
+N VSWSAMI Y + EAL F M + PN +V L ACA L AL+QG
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG 304
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ IH Y+ R G++ + + +A++ MY +CG +E VFD M +RDV ++ SLIS H
Sbjct: 305 KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVH 364
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
AI++F M G P E+M +GI+P ++H
Sbjct: 365 GYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEH 424
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
Y C+VDLLGRA L+ A K+V++M EP V G+LL +CR+HG+V+L + L
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G +VLL++IYA + W+ V++V++ +E ++K+PG +EV + FVS + N
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFN 544
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEVATE 487
LME+I L + + +K + V E
Sbjct: 545 PLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 156/360 (43%), Gaps = 56/360 (15%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I +HLT G + + ++ + G + + +F + R W+ MI +A
Sbjct: 202 KEIHAHLTRRGYSSHVYIMTTLVDM--YARFGCVDYASYVFGGMPVRNVVSWSAMIACYA 259
Query: 65 EKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ + +A +++M+R D PN+ T +L+ACA + L G + H ++R G +S
Sbjct: 260 KNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSI 319
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
V++ L+ +Y C ++ +++FD +RDV+SW SLI+ Y
Sbjct: 320 LPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG----------------- 362
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++GY K+A++ F M G P V L AC+ G +++G+ +
Sbjct: 363 ---------VHGY-----GKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRL 408
Query: 243 HAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSM---PNRDVFAYTSLISGLAN 298
+ R+ GI+ I ++D+ + ++ A + M P V+ SL+
Sbjct: 409 FETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG--SLLGSCRI 466
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVR 357
H +EL R + ++ +EP +Y L D+ A M + K+V +
Sbjct: 467 HGN----VELAER----------ASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKK 512
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 147/345 (42%), Gaps = 64/345 (18%)
Query: 78 QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137
++L + P+ T+ ++ C S L L H ++ G + F+ L+ +Y+
Sbjct: 67 RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLG 126
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
+D ARK+FD + R + W +L +G ++ KM N + V+
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM---NRIG--------VE 175
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA----FLGALDQGRWIHAYVDRNGIEL 253
D F + Y+ L AC + L +G+ IHA++ R G
Sbjct: 176 SDRFT-----YTYV---------------LKACVASECTVNHLMKGKEIHAHLTRRGYSS 215
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ + T ++DMYA+ GC++ A VF MP R+V +++++I+ A + ++ A+ F M
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 275
Query: 314 LEG--VVPN--------ESMSEIYGIEPGVQHYG---------------CLVDLLGRAGM 348
E PN ++ + + +E G +G LV + GR G
Sbjct: 276 RETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGK 335
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
LE ++V M + D +L+++ VHG GK+ ++ E
Sbjct: 336 LEVGQRVFDRMH-DRDVVSWNSLISSYGVHG---YGKKAIQIFEE 376
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 161/475 (33%), Positives = 244/475 (51%), Gaps = 26/475 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFI 94
G + LF L +R W +++ + N P +++ M + D L P++Y F+ +
Sbjct: 52 GLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACL 111
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
++ACA + G HA I D V + L+ +YA C D R +FD +++
Sbjct: 112 VKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNS 171
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
ISWT++I+GYA+SG+ A Q+F KMP KN +SW+A+I+G VQ + ++ F M+
Sbjct: 172 ISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSK 231
Query: 215 GFRPNHAGIVGALT-ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G I+ ++ A A L L G+ IH V G E + + A++DMYAKC +
Sbjct: 232 GIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLA 291
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A +F M RD+ ++TS+I G A H + A+ L+ RM G+ PNE
Sbjct: 292 AKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSH 351
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
SM + YGI P +QHY CL+DLL R+G LE A+ +++ MP +PD
Sbjct: 352 VGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWA 411
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
ALL+AC H + +G + L+ + ++LLSNIYAS W V KVRR M E
Sbjct: 412 ALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAME 471
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
V+K PG S I + F++GE ++ EEI LL +D +K + D + V
Sbjct: 472 VKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSV 526
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 30/226 (13%)
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+ L+ACA +G H +I+ G + + N L+++Y C + A LF+ +R
Sbjct: 8 YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D ISW S++ ++ + MF M FK+
Sbjct: 68 DPISWASILTANNQANLPHLTLSMFPAM--------------------FKQD-------- 99
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G +P+H + ACA LGA+ QG+ +HA + + D ++ ++++DMYAKCG +
Sbjct: 100 --GLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPD 157
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
VFDS+ +++ ++T++ISG A + AI+LF +M ++ ++
Sbjct: 158 IGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLL 203
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
++ +V L ACA + G+ +H ++ + GI+ L +I+MY KCG I+ A ++F+
Sbjct: 3 YSHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFN 62
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339
+P+RD ++ S+++ AN+ + + L M +M + G++P + CL
Sbjct: 63 QLPHRDPISWASILT--ANNQANLPHLTLSMF---------PAMFKQDGLQPDHYVFACL 111
Query: 340 VDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
V G ++ K+V P+ D+ V +L++ G D+G+ +S+ ++
Sbjct: 112 VKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKN 170
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 164/496 (33%), Positives = 258/496 (52%), Gaps = 39/496 (7%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++Q+ +H V+G +I F +A + L++ LF + + F+++ ++
Sbjct: 24 HLEQLHAHAFVAGRAAAQTTTFHLIRF-AAFRLSCLTYARHLFDATPHPSVFLYSAILSA 82
Query: 63 FAEKNEPIKAFA-----------LYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLIC 110
+ ++A L+ +MLR PN + + +LRA + V I
Sbjct: 83 YVSAAATASSYAHAHAHARDALALFLRMLRHGRPAPNQFVYPLVLRAASGVGVGIVKSI- 141
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H+ + G+ +D + +L Y+ M ARKLFD R+V+SWT+L++GYA++G++
Sbjct: 142 HSHACKSGFCGHDIIRTSVLDGYSRHGMMADARKLFDGLTERNVVSWTALVSGYARAGKV 201
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A +F++MPE++ +W+A+I G Q LF EA+ F M GFRPN + L+AC
Sbjct: 202 GDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSAC 261
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
LG L G+ IH Y R + + +IDMY KCG +E A +FD + +R + +
Sbjct: 262 GHLGMLKIGKLIHCYAWRTCVGFGSSVLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWN 321
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
SLI+ LA H S AI +F M+ EGV P+ E M
Sbjct: 322 SLINCLALHGHSKCAISVFNEMRGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHE 381
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+GIEP ++HYGC++DLLGRAG + A V+ +M IE D + G+LLNACRVH V+ +
Sbjct: 382 HGIEPEIEHYGCIIDLLGRAGRFQDALNVISDMRIEADEVMWGSLLNACRVHRQVEFAEL 441
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM-EDNEVRKVPGCSLIEVDGVV 445
+ L+E ++ V+L+N+Y+ W V KVR+ + E+N +K+PGCS IEVD
Sbjct: 442 AIRKLLELDPNNANYVVMLANVYSEGGLWEEVRKVRKFVKEENIGKKLPGCSWIEVDRKT 501
Query: 446 CEFVSGERTNVLMEEI 461
F SG+ + E I
Sbjct: 502 HRFYSGDDAHPESENI 517
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/502 (31%), Positives = 252/502 (50%), Gaps = 67/502 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK + QI+ H F G ++ FC++S +G+L+H L + WN +I
Sbjct: 682 MKHLFQIRGH---------GFIAGPLLRFCASSPLGNLNHARVLLSGSEKSEVSSWNDLI 732
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +A ++ P +A Y +M P+ TF +L+ACA S G V++ G +
Sbjct: 733 RSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAAISAFNEGRKIQVDVMKHGLD 792
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N ++H Y +C +I AR+MFD+M
Sbjct: 793 CNVYVQNTMIHFYGSCK-------------------------------RIRDARRMFDEM 821
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ VSW+A+++ V + ++ F M+ GF P+ +V L+AC+ LG L GR
Sbjct: 822 SYRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGR 881
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H+ V G+ ++ LGTA++DMYAKCG + A VF M R+V+ ++++I GLA H
Sbjct: 882 WVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHG 941
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+ELF +M+ + PN M ++GIEP + HY
Sbjct: 942 FAKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHY 1001
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD---LGKETVESLVE 393
G +VD+L RAG L+ A + MP+E D V LL+AC +HG D +G + + L+E
Sbjct: 1002 GAMVDILSRAGRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLE 1061
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
G V+++N+YA +W+ VRR M+D ++K+ G S IEV G + F SG+
Sbjct: 1062 LEPRRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGGSIHRFFSGDD 1121
Query: 454 TNVLMEEIVLLLFGIDKHLKSL 475
+ E+++ LL G++ H+K++
Sbjct: 1122 PQLDCEDVLQLLDGLNLHMKTV 1143
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 238/449 (53%), Gaps = 25/449 (5%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+N MI G+ +A + ++M+ S + +T+ ++RACA+ L +G HA V+
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
R S+ F N L+ LY C + AR +F+ +D++SW +L++GY SG I A+
Sbjct: 314 RREDFSFHFD-NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F +M EKN +SW MI+G + +E L+ F+ M+ GF P GA+ +CA LGA
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
G+ HA + + G + + G A+I MYAKCG +E A VF +MP D ++ +LI+
Sbjct: 433 YCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAA 492
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEP 331
L H A++++ M +G+ P+ SM +Y I P
Sbjct: 493 LGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPP 552
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
G HY L+DLL R+G A+ ++ +P +P + ALL+ CRVHG+++LG + L
Sbjct: 553 GADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKL 612
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+H+G ++LLSN+YA+T QW V +VR+ M D V+K CS IE++ V F+
Sbjct: 613 FGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVD 672
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
+ ++ E + L + K ++ L + D
Sbjct: 673 DTSHPEAEAVYKYLQDLGKEMRRLGYVPD 701
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 180/388 (46%), Gaps = 41/388 (10%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ G+C++ DI L+ + R T ++N MI GF+ N+ A L+ +M F
Sbjct: 87 VSGYCASGDIA-LARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145
Query: 86 PNNYTFSFILRACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC---- 136
P+++T++ +L A + C+ HA ++ G V N L+ +Y+ C
Sbjct: 146 PDDFTYASVLAGLALVVDDEKQCVQF----HAAALKSGAGYVTSVSNALVSVYSRCASSP 201
Query: 137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMINGY 195
+ + ARK+FD +D SWT+++ GY K+G + +++ M E V+++AMI+GY
Sbjct: 202 SLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGY 261
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
V L++EALE M G + + ACA L G+ +HAYV R +
Sbjct: 262 VNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSF 320
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+++ +Y KCG A ++F+ MP +D+ ++ +L+SG + A +F M+ +
Sbjct: 321 HFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEK 380
Query: 316 GVVPNESMSEIYGI------EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
++ M I G+ E G++ + C + R G EP +Y
Sbjct: 381 NIL--SWMIMISGLAENGFGEEGLKLFSC----MKREG-------------FEPCDYAFS 421
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLD 397
+ +C V G G++ LV+ D
Sbjct: 422 GAIKSCAVLGAYCNGQQFHAQLVKIGFD 449
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 148/320 (46%), Gaps = 25/320 (7%)
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
+ N Y + L + L + H +I G++ + +LN L+ +Y + +D AR+
Sbjct: 11 IANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQ 70
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFK 202
LFD D I+ T++++GY SG I++AR +F++ P ++ V ++AMI G+ +
Sbjct: 71 LFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGY 130
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNGIELDIILGTAI 261
A+ F M+ GF+P+ L A + Q HA ++G + A+
Sbjct: 131 SAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNAL 190
Query: 262 IDMYAKCGC----IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+ +Y++C + +A VFD +P +D ++T++++G + EL M
Sbjct: 191 VSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGM----- 245
Query: 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNA 374
+E+M + Y ++ G+ + A ++VR M IE D + +++ A
Sbjct: 246 --DENMKLV--------AYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRA 295
Query: 375 CRVHGDVDLGKETVESLVER 394
C + LGK+ ++ R
Sbjct: 296 CANARLLQLGKQVHAYVLRR 315
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 120/277 (43%), Gaps = 42/277 (15%)
Query: 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN 87
G+ S+ IG+ +F ++ + W MI G AE + L+ M R F P
Sbjct: 360 GYVSSGHIGEAK---LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPC 416
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
+Y FS +++CA G HAQ++++G++S N L+ +YA C ++ A+++F
Sbjct: 417 DYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFR 476
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
D +SW +LI + G +G VD+++E L+
Sbjct: 477 TMPCLDSVSWNALIAALGQHG------------------------HGVEAVDVYEEMLKK 512
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG----TAIID 263
G RP+ + LTAC+ G +DQGR Y + I G +ID
Sbjct: 513 -------GIRPDRITFLTVLTACSHAGLVDQGR---KYFNSMETVYRIPPGADHYARLID 562
Query: 264 MYAKCGCIETACSVFDSMPNRDVFA-YTSLISGLANH 299
+ + G A S+ +S+P + + +L+SG H
Sbjct: 563 LLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVH 599
>gi|449528931|ref|XP_004171455.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Cucumis
sativus]
Length = 477
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 226/416 (54%), Gaps = 29/416 (6%)
Query: 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
T ++NT+IR + N P A LY QML PN +TF I+++ S L LI HA
Sbjct: 52 TLLYNTLIRAYLNFNRPRFALLLYTQMLSQQTKPNFHTFPSIIKSATICSSLLPKLI-HA 110
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++G + VL + YA + ARK+FD N ++++ S+++ + K+G +
Sbjct: 111 HAFKIGVLTDPVVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFVKNGDLGS 170
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACA 231
A MF MPE + VSW+++ING+ F EAL F M + G +PN A V L++ A
Sbjct: 171 AVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFXVMMMSGSVKPNEATYVSVLSSSA 230
Query: 232 FL---GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
L G L +G+ +HAY+ RN E + +GT +ID Y K G + A +VF+ M R+V
Sbjct: 231 NLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCARTVFNQMKKREVCT 290
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMS 324
+ ++IS A++ + A++LF M++EG+ PNE SM
Sbjct: 291 WNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSML 350
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+ I P +HY C+VDLLG+AG+L A + + MP +PD VLGALL+AC++HG +LG
Sbjct: 351 YDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGALLSACKIHGATELG 410
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
E L+E H G +V L+++ A E+WN +RR M D ++K P S ++
Sbjct: 411 NEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARIQKTPAYSRVD 466
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 120/302 (39%), Gaps = 51/302 (16%)
Query: 26 IIGFCSASDI----GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
I+ F S D GDL +F + W ++I GF ++A + M+
Sbjct: 152 IVAFNSMLDAFVKNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFXVMMM 211
Query: 82 SDFL-PNNYTFSFILRACADTSCLFVGLIC-----HAQVIRLGWESYDFVLNGLLHLYAT 135
S + PN T+ +L + A+ G++C HA +IR E F+ GL+ Y
Sbjct: 212 SGSVKPNEATYVSVLSSSANLDA--EGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGK 269
Query: 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY 195
+ AR +F+ R+V +W ++I+ +A +G+ +
Sbjct: 270 MGLLGCARTVFNQMKKREVCTWNAMISSFASNGRET------------------------ 305
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
EAL+ F M++ G PN V LTACA + G + + + I
Sbjct: 306 -------EALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSML---YDFSI 355
Query: 256 ILGTA----IIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFM 310
+ T ++D+ K G + A +SMP + D +L+S H + E+
Sbjct: 356 VPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGALLSACKIHGATELGNEVGR 415
Query: 311 RM 312
R+
Sbjct: 416 RL 417
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/515 (30%), Positives = 272/515 (52%), Gaps = 67/515 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+KQ++Q+ +HL V+ + K+I CSA I ++ + LF+ + F++N++
Sbjct: 22 VKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAI---AYTHLLFLSVPLPDDFLFNSV 78
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG--LICHAQVIRL 117
I+ ++ P+ A Y++ML S+ P+NYTF+ ++++CAD S L +G + CHA V
Sbjct: 79 IKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGF 138
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G ++Y +L+ Y+K G + ARQ+F
Sbjct: 139 GLDTY---------------------------------VQAALVTFYSKCGDMEAARQVF 165
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MPEK+ V+W+++++G+ Q L ++A+ F M+ GF P+ A V L+ACA GA+
Sbjct: 166 DRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAIS 225
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G W+H Y+ G+++++ LGTA+I++Y++CG + A VFD M +V A+T++IS
Sbjct: 226 LGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYG 285
Query: 298 NHDQSASAIELFMRMQLE-GVVPN------------------------ESMSEIYGIEPG 332
H A++LF +M+ + G +PN + M+E Y + PG
Sbjct: 286 THGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPG 345
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG---ALLNACRVHGDVDLGKETVE 389
V+H+ C+VD+LGRAG L+ A + ++++ + A+L AC++H + DLG E +
Sbjct: 346 VEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAK 405
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L+ ++ G HV+LSNIYA + + + V +R M N +RK G S+IEV+ F
Sbjct: 406 RLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFS 465
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
G+ ++ EI L + K + + EV
Sbjct: 466 MGDESHQETGEIYRYLETLISRCKEIGYAPVSEEV 500
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 243/479 (50%), Gaps = 57/479 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ K++ ++ G D F ++ S S G+ +F + R W +I
Sbjct: 144 LREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQS--GETLGMELVFGEMVVRNIVSWTAVI 201
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+ + + ++++M+ S PN T +L ACA L +G + H I+LG
Sbjct: 202 AGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLG-- 259
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+DP DV +LI Y K G + AR +FD M
Sbjct: 260 ------------------VDP-----------DVSLTNALIALYGKCGNVETARSLFDGM 290
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+N VSW+AMI Y Q + A++ F MQ ++ +V ++ACA LGAL+ GR
Sbjct: 291 VVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGR 350
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H V R G+E+++ + A+IDMYAKCG I+ A VF+ +P R V ++TS+I A+H
Sbjct: 351 WMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHG 410
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
A++LF RM+ EGV PN ESM Y I PGV+H
Sbjct: 411 HGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHC 470
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+VDLLGRAG L A + + +MP+EPD V GALL +CR+H +++L + E L
Sbjct: 471 ACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDP 530
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+VL+SNIYA +W ++R+ ME+ E++K+PG SL+EV+ F+SG R+
Sbjct: 531 QTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFHTFLSGSRSQ 589
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 188/413 (45%), Gaps = 88/413 (21%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+ + ++F + R F+WNT+IRG+A+ +A ALY M + P+NYTF F++R+
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
CA S L G H +++ G++S FV + L+ +Y+ +F V R+++SW
Sbjct: 138 CAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSW 197
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T++I GYVQ FKE L F M G +
Sbjct: 198 TAVI-------------------------------AGYVQNRYFKEGLGVFREMVGSGTQ 226
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
PN +V L ACA L L+ G+ IH Y + G++ D+ L A+I +Y KCG +ETA S+
Sbjct: 227 PNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSL 286
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-------------------- 317
FD M +++ ++ ++I+ ++ A+A++LF RMQ E V
Sbjct: 287 FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGAL 346
Query: 318 VPNESMSEIY---GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP-------------- 360
M E+ G+E V L+D+ + G ++ A++V +P
Sbjct: 347 NTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGAC 406
Query: 361 --------------------IEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
++P+++ A+ ACR G V+ G++ ES++
Sbjct: 407 ASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMR 459
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC--GCIETACSVFDSMPNR 284
L C+ L L + IHA V NG +++L T +I + A C ++ A +FD MP R
Sbjct: 36 LNCCSSLPDLSR---IHALVVTNGCGQNLLLSTKLI-ITACCLAPTMDYARKMFDQMPKR 91
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
DVF + +LI G A+ A+ L+ M G+ P+
Sbjct: 92 DVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPD 127
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 239/457 (52%), Gaps = 36/457 (7%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL--RACAD 100
+ F + R WNT+I G+A+ + +A L+ + D S + R +
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEE 299
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
LF + +V W N +L Y M+ A++LFD+ R+V +W ++
Sbjct: 300 ARELFDKMPERNEV---SW-------NAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTM 349
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
I GYA+ G+IS A+ +FDKMP+++ VSW+AMI GY Q EAL F M+ G R N
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNR 409
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+ AL+ CA + AL+ G+ +H + + G E +G A++ MY KCG IE A +F
Sbjct: 410 SSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 469
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M +D+ ++ ++I+G + H A+ F M+ EG+ P++
Sbjct: 470 MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 529
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
+M++ YG+ P QHY C+VDLLGRAG+LE A +++ MP EPD + G LL A R
Sbjct: 530 RQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASR 589
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
VHG+ +L + + + ++ G++VLLSN+YAS+ +W V K+R M D V+KVPG
Sbjct: 590 VHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGY 649
Query: 437 SLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
S IE+ F G+ + +EI L +D +K
Sbjct: 650 SWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMK 686
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 185/437 (42%), Gaps = 119/437 (27%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
+L LF + R WNTM+ G+A+ A +++ +M + + N S ++
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200
Query: 97 -----------------ACADTSCLFVGLICHAQVI--RLGWESYDF----VLNGLLHLY 133
A +CL G + +++ R ++S + N ++ Y
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGY 260
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
A +D AR+LFD S +DV +WT++++GY ++ + AR++FDKMPE+N VSW+AM+
Sbjct: 261 AQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLA 320
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
GYVQ + + A E F+ M C RN
Sbjct: 321 GYVQGERMEMAKELFDVM-----------------PC-----------------RN---- 342
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ +I YA+CG I A ++FD MP RD ++ ++I+G + S A+ LF++M+
Sbjct: 343 -VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401
Query: 314 LEGVVPNESM--------SEIYGIEPGVQHYGCLVD-------LLGRA--------GMLE 350
EG N S +++ +E G Q +G LV +G A G +E
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 351 AAKKVVREMP----------------------------------IEPDNYVLGALLNACR 376
A + +EM ++PD+ + A+L+AC
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 377 VHGDVDLGKETVESLVE 393
G VD G++ ++ +
Sbjct: 522 HTGLVDKGRQYFYTMTQ 538
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 148/323 (45%), Gaps = 37/323 (11%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN I + +A ++K+M R + N S LR G A+ +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRN---------GEFELARKL 117
Query: 116 RLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
D V N ++ Y + AR+LF++ RDV SW ++++GYA++G + AR
Sbjct: 118 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDAR 177
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
+FD+MPEKN VSW+A+++ YVQ +EA F R N A + C G
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS------RENWALVS---WNCLLGG 228
Query: 235 ALDQGRWIHA--YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+ + + + A + D + D++ II YA+ G I+ A +FD P +DVF +T++
Sbjct: 229 FVKKKKIVEARQFFDSMNVR-DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAM 287
Query: 293 ISGLANHDQSASAIELFMRM----------QLEGVVPNESM---SEIYGIEP--GVQHYG 337
+SG + A ELF +M L G V E M E++ + P V +
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWN 347
Query: 338 CLVDLLGRAGMLEAAKKVVREMP 360
++ + G + AK + +MP
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMP 370
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S LF + R W MI G+++ +A L+ QM R N +FS L
Sbjct: 357 GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSAL 416
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
CAD L +G H ++++ G+E+ FV N LL +Y C ++ A LF +D++
Sbjct: 417 STCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIV 476
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW ++I GY++ G +A + F+ M + G
Sbjct: 477 SWNTMIAGYSRHGFGEVALRFFESMKRE-------------------------------G 505
Query: 216 FRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ A +V L+AC+ G +D+GR + + G+ + ++D+ + G +E A
Sbjct: 506 LKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDA 565
Query: 275 CSVFDSMP 282
++ +MP
Sbjct: 566 HNLMKNMP 573
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 119/258 (46%), Gaps = 24/258 (9%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D+ W I+ Y ++G+ + A ++F +MP ++VS++ MI+GY++ F+ A + F+ M
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM- 121
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
P + + ++ + G+ + E D+ ++ YA+ GC++
Sbjct: 122 -----PERDLVSWNVMIKGYVRNRNLGKARELF--EIMPERDVCSWNTMLSGYAQNGCVD 174
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ----------LEGVVPNES 322
A SVFD MP ++ ++ +L+S + + A LF + L G V +
Sbjct: 175 DARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKK 234
Query: 323 MSEIYGIEPG-----VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
+ E V + ++ ++G ++ A+++ E P++ D + A+++
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVSGYIQ 293
Query: 378 HGDVDLGKETVESLVERS 395
+ V+ +E + + ER+
Sbjct: 294 NRMVEEARELFDKMPERN 311
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/493 (32%), Positives = 254/493 (51%), Gaps = 58/493 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
KQ+ + + G ++P K++ +C + L++ + LF + R F+WN MIRG+
Sbjct: 21 KQLHARICQVGISFNPLLATKLVNLYCICNS---LTNAHLLFDRISKRNLFLWNVMIRGY 77
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
A A +LY QM +P+ +TF F+L+AC+ S + G H VIR G ES
Sbjct: 78 AWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDV 137
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV L+ +YA C C++ AR++FD RDV+ W S++ Y+++GQ P+
Sbjct: 138 FVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ-----------PD- 185
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
E+L M G +P V ++ A A G L QG+ +H
Sbjct: 186 -------------------ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELH 226
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y R+G E + + TA++DMYAK G + A S+F+ + + V ++ ++I+G A H +
Sbjct: 227 GYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHAN 286
Query: 304 SAIELFMRMQ-----------------------LEGVVPNESMSEIYGIEPGVQHYGCLV 340
A++LF M+ EG + SM + I P VQHY C++
Sbjct: 287 EALDLFKEMKGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMI 346
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLG G LE A K++ EM +EPD V GALL++C++HG+V++G+ +E LVE D G
Sbjct: 347 DLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGG 406
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
+V+LSN+YA +W+GV ++R M + ++K CS IEV V F+S + ++ E
Sbjct: 407 NYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEA 466
Query: 461 IVLLLFGIDKHLK 473
I L K +K
Sbjct: 467 IYAELKRTGKLMK 479
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 31/231 (13%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
++ +L++C + G HA++ ++G + L++LY CN + A LFD
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
R++ W +I GYA +G +A ++ +M +
Sbjct: 64 KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDY--------------------------- 96
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
G P+ L AC+ L A+++G+ IH V R+G+E D+ +G A+IDMYAKCGC
Sbjct: 97 ----GLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGC 152
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+E+A VFD + RDV + S+++ + + Q ++ L M G+ P E
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTE 203
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 23/152 (15%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L +C A++ G+ +HA + + GI + +L T ++++Y C + A +FD + R++
Sbjct: 8 LQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNL 67
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-----------------ESMSEIY-- 327
F + +I G A + AI L+ +M+ G+VP+ E +I+
Sbjct: 68 FLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKD 127
Query: 328 ----GIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
G+E V L+D+ + G +E+A++V
Sbjct: 128 VIRSGLESDVFVGAALIDMYAKCGCVESARQV 159
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 208/337 (61%), Gaps = 24/337 (7%)
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D AR+LFD +RD++ W S+I+GYA+ G++ AR +F++MPE+N +SWS +I+GYV+
Sbjct: 229 VDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRF 288
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
EALE F M CG +P+ VGA+ ACA LGAL+QGRW+H+Y+++ + D+++
Sbjct: 289 GEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQ 348
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
TA+IDMY KCG ++ A +F+SMP + V + +I GL H AI+LF +M+ E
Sbjct: 349 TALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAP 408
Query: 319 PNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
++ M + G+EP V+HYG L+DLLGRAG ++ A+
Sbjct: 409 MDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARN 468
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+ MP+EP + G+LL +CR H V+L + +VE L D GV+VLLSNIYA
Sbjct: 469 TIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 528
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
W+ V ++R+ M ++K G S+IEVDG + EFV+G
Sbjct: 529 WDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNG 565
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 63/333 (18%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R F WNT++R A + P ++ + +M R+ P+ YTF +L+AC VGL+
Sbjct: 80 RHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVV 138
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H + +R G ++ F N L+ Y RK+FD V RD++SW S++ GY G++
Sbjct: 139 HGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGV-RDLVSWNSMVAGYVGCGEV 197
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
+A+ +FD+M +++A SW+ MI+GY ++
Sbjct: 198 DLAQDLFDEMRQRDAFSWATMIDGYGEM-------------------------------- 225
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
G +D+ R + + + D++ ++ID YA+ G ++ A +F+ MP R+V +++
Sbjct: 226 --AGGVDRARELFDQMP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWS 279
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG---------- 332
+I G + A+E F RM G+ P+ + +++ +E G
Sbjct: 280 IVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKK 339
Query: 333 -----VQHYGCLVDLLGRAGMLEAAKKVVREMP 360
V L+D+ + G L+ AK + MP
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMP 372
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 9/252 (3%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R WN+MI G+A +A L+++M N ++S ++
Sbjct: 227 GGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPER----NVISWSIVI 282
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--- 152
L +++R G + G + A ++ R L +
Sbjct: 283 DGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVL 342
Query: 153 -DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
DV+ T+LI+ Y K G++ +A+ +F+ MP+K+ V+W+ MI G +A++ FN M
Sbjct: 343 FDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQM 402
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGC 270
+ + I+ LT+C G + +G I ++++ G+E + A+ID+ + G
Sbjct: 403 ETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGR 462
Query: 271 IETACSVFDSMP 282
++ A + ++MP
Sbjct: 463 VDQARNTIETMP 474
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 43/302 (14%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
LRAC+ S L CHA ++ G HL A+ PAR + +
Sbjct: 17 LRACSSASH---ALQCHALLLTSG------------HLAAS-----PARLSNLLLLALAS 56
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
S + +A S +A + ++A W+ ++ + + +L +F+ M+
Sbjct: 57 ASASPSAADHADSVFAHLAEE-----ASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRA 110
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ L AC G +H R G++ D+ A+I Y + G +
Sbjct: 111 AVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSG 170
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
VFD RD+ ++ S+++G + A +LF M+ +M + YG
Sbjct: 171 RKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG------ 223
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
AG ++ A+++ +MP + D ++++ HG +D + E + ER
Sbjct: 224 ---------EMAGGVDRARELFDQMP-DRDLVCWNSMIDGYARHGRMDEARVLFEEMPER 273
Query: 395 SL 396
++
Sbjct: 274 NV 275
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 245/485 (50%), Gaps = 62/485 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGF-----AEKNEPIKAFALYKQMLRSDFLPNNYT 90
G +++ +F L F +NT++RG+ +P A L+ M+ P++YT
Sbjct: 81 GSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYT 140
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
F F+ +ACA L G +++LG++
Sbjct: 141 FPFVFKACAQLGALQEGRQLQGHLVKLGFQ------------------------------ 170
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHF 208
RD S SLI+ Y K G+ +AR+ F++M E+ SWSA++ Y + + E +E F
Sbjct: 171 -RDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESF 229
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
M G+RP+ + +V AL+ACA LGA D GR IH + RN L+ + T+++DMYAKC
Sbjct: 230 GAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKC 289
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
GCIE A +VFD+M +++ + Y++++SGLA H A+E+F M EG P+
Sbjct: 290 GCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVL 349
Query: 321 ----------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+ M + + P QHYGC+VDL+ RAG L+ A+ ++ MP P
Sbjct: 350 NACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPT 409
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
+ +LLNACR+HG+++L + ++ L + G +++LS+++A + R
Sbjct: 410 DTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTE 469
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
D + + PG S +EV G FVS +R++ ++I +L ++ L+ + D +E+
Sbjct: 470 AVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSEL 529
Query: 485 ATEGG 489
A + G
Sbjct: 530 ALDAG 534
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 42/289 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNT 58
+++ +Q+Q HL G D + +I F DL+ R F ++ +TT W+
Sbjct: 154 LQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLAR--RAFEQMEDDEQTTASWSA 211
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
++ + + + M+R+ + P+ + L ACA VG H ++R
Sbjct: 212 LLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNT 271
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
F+ L+ +YA C C++ A +FD +++ +++++++G A G
Sbjct: 272 ARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGD--------- 322
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
++ALE F+ M G RP+ A VG L AC+ G L++
Sbjct: 323 ----------------------GRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEE 360
Query: 239 GRWIHAYVDRNGIELDIILGTA----IIDMYAKCGCIETACSVFDSMPN 283
G DR +E + ++D+ A+ G ++ A ++ +MP
Sbjct: 361 GLRC---FDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPT 406
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 245/454 (53%), Gaps = 24/454 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L ++F L W ++I G A+ +A L+ QM + +T + +L
Sbjct: 295 GRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVL 354
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C + +G HA I G +S V N L+ +YA C + A F++ RD+I
Sbjct: 355 GVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDII 414
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT++I ++++G + AR+ FDKMPE+N +SW++M+ Y+Q ++E L+ + M G
Sbjct: 415 SWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREG 474
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ + +++ACA L L G I A ++ G ++ + +++ MY++CG IE A
Sbjct: 475 VKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQ 534
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+F S+ +++ ++ ++++G A + Q IE+F +M G VP++
Sbjct: 535 KMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSG 594
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM++ +GI P +H+ C+VDLLGRAG LE AK ++ +MP +P+ + GAL
Sbjct: 595 FVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGAL 654
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR+HG+ L + V++L+E + G + LL+NIY+ + + GV VR+ M D VR
Sbjct: 655 LAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVR 714
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
K PGCS IEVD V F + + ++++ +L
Sbjct: 715 KNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 185/401 (46%), Gaps = 43/401 (10%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S+ G +S YR+F + + + WNTMI GFA+ + +A L+++M D + N S
Sbjct: 50 SNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMS 109
Query: 93 ---------FILRACADTSCLFVGLICHAQVIRLGWESYDF-----VLNGLLHLYATCNC 138
++A L + L H E +DF V +L +Y C
Sbjct: 110 GYFHNGELEATIKASGSLGYLKLALQLHGFA-----EKFDFGIDTCVETSVLDMYIKCGA 164
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
MD A+K+F + N + W S+I GY+K G + A ++F KMPE++ VSW+ MI+ Q
Sbjct: 165 MDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQH 224
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
E L F M GFRPN L+AC + L+ G +HA + R LD+ G
Sbjct: 225 GFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAG 284
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+IDMYAKCG +E+A VFD + + ++TSLI G+A A+ LF +M+ V
Sbjct: 285 CGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVA 344
Query: 319 PNE-----------SMSEI------------YGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
++ S +I G++ V LV + + G + A
Sbjct: 345 SDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHA 404
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
MPI D A++ A GDV+ +E + + ER++
Sbjct: 405 FELMPIR-DIISWTAMITAFSQAGDVEKAREYFDKMPERNV 444
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 166/392 (42%), Gaps = 112/392 (28%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
++ CA + + HAQ+I +G +S F+ N LL++Y+ C + A ++F + +V
Sbjct: 11 MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SW ++I+G+A SGQ+ A ++F+KMPE+++VSW++M++GY
Sbjct: 71 YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYF------------------ 112
Query: 215 GFRPNHAG-IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC--- 270
H G + + A LG L +H + ++ +D + T+++DMY KCG
Sbjct: 113 -----HNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDF 167
Query: 271 ----------------------------IETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
++ A +F MP RD ++ ++IS L+ H
Sbjct: 168 AQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFG 227
Query: 303 ASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQ--------------HYGC-L 339
A + F+ M +G PN + + IY +E G + GC L
Sbjct: 228 AETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGL 287
Query: 340 VDLLGRAGMLEAAKKV----------------------------------VREMPIEPDN 365
+D+ + G LE+A++V +RE+P+ D
Sbjct: 288 IDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQ 347
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+ L +L C D+ +G++ + R LD
Sbjct: 348 FTLATVLGVCLSQKDISIGEQLHAHTITRGLD 379
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 131/295 (44%), Gaps = 31/295 (10%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G + LF + R T WNTMI ++ + + +M F PN+ T++
Sbjct: 191 SKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYA 250
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L AC L G HA+++R+ L +YA C
Sbjct: 251 SVLSACTSIYDLEWGAHLHARIVRM---------EPCLDVYAGCG--------------- 286
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
LI+ YAK G++ ARQ+FD + E NAVSW+++I G Q +EAL FN M+
Sbjct: 287 -------LIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMR 339
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+ + L C + G +HA+ G++ + + A++ MYAKCG +
Sbjct: 340 EVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVW 399
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327
A F+ MP RD+ ++T++I+ + A E F +M V+ SM Y
Sbjct: 400 KANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATY 454
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GD+ F + R WN+M+ + ++ + +Y QMLR + TFS
Sbjct: 424 SQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFS 483
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+ ACAD + L +G AQ +LG+ S V N ++ +Y+ C ++ A+K+F V +
Sbjct: 484 TSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK 543
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+++SW +++ GYA++GQ ++F+KM
Sbjct: 544 NLVSWNAMMAGYAQNGQGRKVIEIFEKMLN------------------------------ 573
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCI 271
G P+ V L+ C+ G + +G++ + ++ GI ++D+ + G +
Sbjct: 574 -IGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQL 632
Query: 272 ETACSVFDSMP 282
E A ++ + MP
Sbjct: 633 EQAKNLINQMP 643
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285
++ CA L ++ R +HA + G++ I L +++MY+ CG I A VF + +
Sbjct: 10 SMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 69
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327
V+++ ++ISG A+ Q A +LF +M V SM Y
Sbjct: 70 VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGY 111
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 248/460 (53%), Gaps = 39/460 (8%)
Query: 9 SHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNE 68
S L VS L +A GFC +L ++F + R WN++I G+
Sbjct: 828 SDLFVSNALIHGYA-----GFC------ELGFARKVFDEMSERDLVSWNSLICGYGRCRR 876
Query: 69 PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFV--GLICHAQVIRLGWESYDFVL 126
+ ++++M +D + T ++ AC V +I + + ++ + Y +
Sbjct: 877 YSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVY--LG 934
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N L+ +Y + +D AR++FD +R+++SW ++I GY K+G + AR++FD MP ++ +
Sbjct: 935 NTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVI 994
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
SW++MI+ Y Q F +A+ F M + +P+ + L+ACA +GALD G +H Y+
Sbjct: 995 SWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYI 1054
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
+ + DI +G A+IDMY KCG +E SVF+ M RD ++TS+I+GLA + + SA+
Sbjct: 1055 RKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSAL 1114
Query: 307 ELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDL 342
LF M EGV P ESM +YG+ P ++HYGC+VDL
Sbjct: 1115 NLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDL 1174
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402
L R+G L A + ++ MP++PD V LL+A +VHG++ L + + L+E + G +
Sbjct: 1175 LSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNY 1234
Query: 403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+L SN YA + +W V K+RR ME++ V K S +E++
Sbjct: 1235 ILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEIN 1274
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 177/377 (46%), Gaps = 58/377 (15%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DP ++ ++ + S L LF + T WN MIRG+++ N+PI+A Y
Sbjct: 728 DPISIFNLLKSYALSPTNILK-ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNL 786
Query: 79 MLRSDFLPNNYTFSFILRACA---DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT 135
M NN T+ F+L+ACA + SC V HA+V++LG++S FV N L+H
Sbjct: 787 MYSQALFGNNLTYPFLLKACARISNVSCTTV----HARVLKLGFDSDLFVSNALIH---- 838
Query: 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY 195
GYA ++ AR++FD+M E++ VSW+++I GY
Sbjct: 839 ---------------------------GYAGFCELGFARKVFDEMSERDLVSWNSLICGY 871
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
+ + E L F M++ + + +V + AC LG + Y++ N +E+D+
Sbjct: 872 GRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDV 931
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
LG +IDMY + ++ A VFD M +R++ ++ ++I G +A +LF M
Sbjct: 932 YLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHR 991
Query: 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALL 372
V+ SM Y +AG A ++ +EM ++PD + ++L
Sbjct: 992 DVISWTSMISSY----------------SQAGQFGKAVRLFQEMMVTKVKPDEITVASVL 1035
Query: 373 NACRVHGDVDLGKETVE 389
+AC G +D+G+ E
Sbjct: 1036 SACAHIGALDVGEAVHE 1052
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 11/245 (4%)
Query: 153 DVISWTSLINGYAKS-GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
D IS +L+ YA S I A ++F ++P W+ MI G+ Q + EA+ ++N M
Sbjct: 728 DPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLM 787
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
N+ L ACA + + +HA V + G + D+ + A+I YA +
Sbjct: 788 YSQALFGNNLTYPFLLKACARISNV-SCTTVHARVLKLGFDSDLFVSNALIHGYAGFCEL 846
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
A VFD M RD+ ++ SLI G + + + +F M+ M+++ G
Sbjct: 847 GFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMR---------MADVKGDAV 897
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
+ +LG G+++A + + E +E D Y+ L++ VDL + + +
Sbjct: 898 TMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRM 957
Query: 392 VERSL 396
+R++
Sbjct: 958 RDRNM 962
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/437 (33%), Positives = 237/437 (54%), Gaps = 25/437 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F + R W M+ + + +A L+ M RS +P+ + +L
Sbjct: 118 GRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVL 177
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
CA T L G H+ ++ V L+++YA+C M+ A KL++ ++++
Sbjct: 178 STCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIV 237
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+++ GYAK+G++ IA +F+ MP K+ VSWSAMI GY + EAL F+ MQ G
Sbjct: 238 LSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSG 297
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ ++ ++ACA +GAL++ R IH++V+ + + + +G A+IDM++KCG + A
Sbjct: 298 VKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLAL 357
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
VF++MP ++V +TS+I+ A H SA+ LF M+ EG+ PN
Sbjct: 358 DVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAG 417
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+ M + Y IEP +HYGC+VDLLGRA +L A +++ M + P+ + G+L
Sbjct: 418 LVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSL 477
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR+HGD++LG + ++E +H G VLLSNIYA WN V K +D E +
Sbjct: 478 LAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDV-KEGLSKKDYEKK 536
Query: 432 KVPGCSLIEVDGVVCEF 448
K +E+ + F
Sbjct: 537 KELAARFLEISADLSNF 553
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 145/373 (38%), Gaps = 86/373 (23%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P +LRA A L H R+G E FV L+ YA C ++ AR++
Sbjct: 67 PGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRV 126
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
FD +RD+++W M++ Y Q ++EAL
Sbjct: 127 FDGMPDRDLVAW-------------------------------GVMLDCYCQARNYEEAL 155
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
F+ M+ P+ I L+ CA L G+ IH+Y+ + +D + A+++MY
Sbjct: 156 LLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMY 215
Query: 266 AKC-------------------------------GCIETACSVFDSMPNRDVFAYTSLIS 294
A C G +E A S+F+ MP +DV +++++I+
Sbjct: 216 ASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIA 275
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE--------------SMSEIYGIEPGVQHYG--- 337
G A + A+ LF MQ GV P+E ++ + I V+++
Sbjct: 276 GYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCK 335
Query: 338 ------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
L+D+ + G L A V MP + + +++ A +HGD E++
Sbjct: 336 ILPIGNALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMHGDGRSALTLFENM 394
Query: 392 VERSLDHEGVHVL 404
+ GV L
Sbjct: 395 KSEGIQPNGVTFL 407
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 241/482 (50%), Gaps = 98/482 (20%)
Query: 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
IWN MIRG+A + ++ +M + P+N+T+ +++ +C + G H ++
Sbjct: 21 IWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCEI 80
Query: 115 IRLGWESYDFVLNGLLHLY------------ATCN-----------CMDP---------- 141
++ G+ES V N L ++Y + C C+ P
Sbjct: 81 VKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGK 140
Query: 142 ---------ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI 192
AR+LFD+ RD++SW S+I GYAK G+++ AR +F+KMPEKN +SW++MI
Sbjct: 141 YVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNVISWTSMI 200
Query: 193 NGYVQVD-------------------------------LFKEALEHFNYMQLCGFRPNHA 221
Y D F E+L F MQ G P+
Sbjct: 201 GAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGY 260
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
V L+AC+ LG L+ G++IH Y+ + + ++++GTA+ +MYA+CG ++ A +VF +
Sbjct: 261 TFVSVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKI 319
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------------- 321
RDVF + +I LA H +S AI++F+ M+ G+ PN+
Sbjct: 320 GKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGH 379
Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
SM + Y I P + HYGCL+D+L R G LE A +V +MP +PD + GALL CRV
Sbjct: 380 IIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRV 439
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
GD+ L ++ VE E + GV+VLLSNI+AS QW R+ M++ ++ K G S
Sbjct: 440 TGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEAADARKKMDEKKISKKTGSS 499
Query: 438 LI 439
++
Sbjct: 500 VV 501
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 34/265 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+D DL F + R WN+MI +A+ + +++ L+ QM P+ YTF
Sbjct: 204 ADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFV 263
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L AC++ L G H L +S V L +YA C +D A +F R
Sbjct: 264 SVLSACSNLGDLEFGKYIHYLSGDLS-QSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKR 322
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV W +I A G+ +EA++ F M+
Sbjct: 323 DVFCWNVIIKALALHGRS-------------------------------EEAIKIFLLMR 351
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCI 271
G +PN AL AC+ G +++G I ++++ I I +IDM + G +
Sbjct: 352 KTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQL 411
Query: 272 ETACSVFDSMP-NRDVFAYTSLISG 295
E A + + MP DV + +L+ G
Sbjct: 412 EEAMLLVEDMPFQPDVAIWGALLGG 436
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 45/270 (16%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHF 208
+++ W ++I GYA +G +MFD+MP++ + ++ +IN +++ +
Sbjct: 18 EIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVH 77
Query: 209 NYMQLCGFRPNHAGI---------------VGALTACAFLGALDQGRWIHAYVDRNGIEL 253
+ GF ++A VG + C LD R I + +E
Sbjct: 78 CEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNC----KLDYARKIFDDMCVRPVE- 132
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
L +I Y G +++A +FD MP RD+ ++ S+I G A + A+A LF +M
Sbjct: 133 ---LWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMP 189
Query: 314 LEGVVPNESMSEIYG---------------IEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+ V+ SM Y + V + ++ + G + + +
Sbjct: 190 EKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQ 249
Query: 359 MPIE---PDNYVLGALLNACRVHGDVDLGK 385
M E PD Y ++L+AC GD++ GK
Sbjct: 250 MQSEGVTPDGYTFVSVLSACSNLGDLEFGK 279
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 12/154 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ + +F+ + R F WN +I+ A +A ++ M ++ PN++TF+ L
Sbjct: 307 GDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSAL 366
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH------LYATCNCMDPARKLF-DM 148
AC+ GL+ +I E ++ + H + ++ A L DM
Sbjct: 367 FACSHG-----GLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDM 421
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
DV W +L+ G +G + +A ++ +K E
Sbjct: 422 PFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATE 455
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/500 (31%), Positives = 259/500 (51%), Gaps = 42/500 (8%)
Query: 6 QIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
Q L S T WD + ++ G+ S I + ++F + R WNTM+ G+A
Sbjct: 248 QEARELFDSRTEWDAISWNALMAGYVQRSQIEE---AQKMFNKMPQRDVVSWNTMVSGYA 304
Query: 65 EKNEPIKAFALYKQMLRSDFLP--NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ + +A L+ D P + +T++ I+ A G++ A+ +
Sbjct: 305 RRGDMAEARRLF------DVAPIRDVFTWTAIVSGYAQN-----GMLEEAKRVFDAMPDK 353
Query: 123 DFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
+ V N ++ Y M+ A++LFD R+V SW +++ GYA++G + AR +F MP
Sbjct: 354 NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMP 413
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+K+AVSW+AM+ Y Q+ +E L+ F M CG N + L+ CA + AL+ G
Sbjct: 414 QKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 473
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H+ + + G + +G A++ MY KCG +E A S F+ M RDV ++ ++I+G A H
Sbjct: 474 LHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGF 533
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
A+E+F M+ P++ SM +G+ +HY
Sbjct: 534 GKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYT 593
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C++DLLGRAG L+ A ++++MP EPD+ + GALL A R+H + +LG+ E + E +
Sbjct: 594 CMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPE 653
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
+ G++VLLSNIYAS+ +W V+K+R M + V+KVPG S IEV V F G+ +
Sbjct: 654 NAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPE 713
Query: 458 MEEIVLLLFGIDKHLKSLCF 477
E+I L +D +K +
Sbjct: 714 REDIYAFLEDLDIRMKKAGY 733
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 160/385 (41%), Gaps = 90/385 (23%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + RLF + R+T +NTM+ G+A +A + ++ + R P++++++ +L
Sbjct: 121 GRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR----PDSFSYNTLL 176
Query: 96 RAC------ADTSCLF------------VGLICHAQ--VIRLGWESYDFV-------LNG 128
A AD LF V + HA ++ L +D NG
Sbjct: 177 HALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 236
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
+L Y + AR+LFD D ISW +L+ GY + QI A++MF+KMP+++ VSW
Sbjct: 237 MLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSW 296
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+ M++GY + EA F+ +
Sbjct: 297 NTMVSGYARRGDMAEARRLFDVAPI----------------------------------- 321
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
D+ TAI+ YA+ G +E A VFD+MP+++ ++ ++++ A EL
Sbjct: 322 ----RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKEL 377
Query: 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
F M V +M Y +AGML+ A+ + MP + D
Sbjct: 378 FDAMPCRNVASWNTMLTGY----------------AQAGMLDEARAIFGMMP-QKDAVSW 420
Query: 369 GALLNACRVHGDVDLGKETVESLVE 393
A+L A + + +ET++ E
Sbjct: 421 AAMLAA---YSQIGFSEETLQLFKE 442
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 50/264 (18%)
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
PA + +VI I + ++G++ A ++F MP ++ +++ M+ GY
Sbjct: 94 PADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGR 153
Query: 201 FKEALEHFNYMQLCGFRPN--------HAGIVGALTACAFLGALDQGRWIHAYVDRN--- 249
+AL F + RP+ HA +G ++ A + AL + V N
Sbjct: 154 LPQALSFFRSIP----RPDSFSYNTLLHA--LGVSSSLADVRALFDEMPVKDSVSYNVMI 207
Query: 250 ------------------GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
E D + ++ Y + G I+ A +FDS D ++ +
Sbjct: 208 SSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNA 267
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESM-------------SEIYGIEP--GVQHY 336
L++G Q A ++F +M VV +M ++ + P V +
Sbjct: 268 LMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTW 327
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP 360
+V + GMLE AK+V MP
Sbjct: 328 TAIVSGYAQNGMLEEAKRVFDAMP 351
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 163/458 (35%), Positives = 242/458 (52%), Gaps = 61/458 (13%)
Query: 40 HGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKA---FALYKQMLRS-DFLPNNYTFSFIL 95
+ LF + T F +N++IR + A +Y++MLR+ LPN++T +F L
Sbjct: 76 YARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFAL 135
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC+ L G H+Q R G E +V GLL+LY
Sbjct: 136 KACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLY---------------------- 173
Query: 156 SWTSLINGYAKSGQISIARQMFDKM-PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
AK ++++AR +FD M +KN +WSAMI GY +V + EAL F MQ
Sbjct: 174 ---------AKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAA 224
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ +V ++ACA GALD GRW+HA++DR GI +D+ L TA+IDMYAKCG IE A
Sbjct: 225 DVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERA 284
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
VFD+M RD A++++I GLA H A++LF RM V PN
Sbjct: 285 KGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 344
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
+M E+ GI+P +++YGC+VDL R+ +L+ A V M I P++ +
Sbjct: 345 GLVNEGRRYWSTMQEL-GIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRT 403
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL A + D+ + + L+E + +VLLSN+YAS QW+ V +R+ M++N V
Sbjct: 404 LLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNV 463
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
V GCS IE++G + +FV + ++ ++EI LLL I
Sbjct: 464 NVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREI 501
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 241/473 (50%), Gaps = 57/473 (12%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G L ++F + R WN++I G + + A ++ M S P+ T +
Sbjct: 218 LGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSL 277
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A A + G H ++R GW+ D+
Sbjct: 278 ASAIAQCGDICGGRSVHCYMVRRGWDV------------------------------GDI 307
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
I+ ++++ YAK +I A++MFD MP ++AVSW+ +I GY+Q L EA+ +++MQ
Sbjct: 308 IAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKH 367
Query: 215 -GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G +P V L A + LGAL QG +HA + G+ LD+ +GT +ID+YAKCG ++
Sbjct: 368 EGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDE 427
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A +F+ P R + ++ISG+ H A A+ LF +MQ EG+ P+
Sbjct: 428 AMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSH 487
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
M YGI+P +HY C+VD+ GRAG L+ A +R MPI+PD+ + G
Sbjct: 488 AGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWG 547
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
ALL ACR+HG+V++GK ++L E + G +VL+SN+YA +W+GV++VR +
Sbjct: 548 ALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQN 607
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNV--LMEEIVLLLFGIDKHLKSLCFFDD 480
++K PG S IEV V F SG + N+ EEI L + ++SL + D
Sbjct: 608 LQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPD 660
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 181/426 (42%), Gaps = 92/426 (21%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D FA G ++ + G + YR F +++R WN M+ G +A L+ +
Sbjct: 103 DAFASGALVH--AYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGR 160
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M+ + T S +L C + LG D L +HLYA +
Sbjct: 161 MVMEGVAGDAVTVSSVLPMC----------------VLLG----DRALALAMHLYAVKHG 200
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+D ++ ++I+ Y K G + R++FD M ++ V+W+++I+G+ Q
Sbjct: 201 LDD-----------ELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQG 249
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIIL 257
A+E F M+ G P+ ++ +A A G + GR +H Y+ R G ++ DII
Sbjct: 250 GQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIA 309
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL-EG 316
G AI+DMYAK IE A +FDSMP RD ++ +LI+G + ++ AI ++ MQ EG
Sbjct: 310 GNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEG 369
Query: 317 VVPNE--------SMSEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAK 353
+ P + + S + ++ G + + C++DL + G L+ A
Sbjct: 370 LKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAM 429
Query: 354 KVVREMP----------------------------------IEPDNYVLGALLNACRVHG 379
+ + P I PD+ +LL AC G
Sbjct: 430 LLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAG 489
Query: 380 DVDLGK 385
VD G+
Sbjct: 490 LVDQGR 495
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 235/474 (49%), Gaps = 55/474 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G + +F + +T WN+M+ G+ + EP KA A++++ML P T
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L ACAD L G H V +L S
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGS------------------------------- 382
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D+ SLI+ Y+K ++ IA +F+ + + VSW+AMI GY Q EAL F+ M+
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK 442
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G +P+ +V + A A L +WIH + R+ ++ +I + TA++DMY+KCG I
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIH 502
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
A +FD + +R V + ++I G H +A++LF +M+ V PN+
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
SM + YG+EP + HYG +VDLLGRAG ++ A + MPI P V
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
GA AC++H ++++G++ + L E + D G HVLL+NIYAST +W+ V +VR+ ME
Sbjct: 623 GAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN 482
++K PGCS++E+ V F SG T+ + I L + +K+ + D N
Sbjct: 683 GLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTN 736
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 156/320 (48%), Gaps = 33/320 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
MK++ QI + +G + K++ S G ++ R+F + + +++TM+
Sbjct: 62 MKELHQIIPLVIKNGLYNEHLFQTKLVSLFS--KYGSINEAARVFEPIDDKLDALYHTML 119
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G+A+ + A A +M D P Y F+++L+ C D + L G H Q+I +
Sbjct: 120 KGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFA 179
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ F + G++++YA C +D A K+FD RD++SW ++I G++++G
Sbjct: 180 ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNG------------ 227
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ALE MQ G RP+ +V L A A +G L G+
Sbjct: 228 -------------------FAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y R G + + TA+ DMY+KCG +ETA +FD M + V ++ S++ G +
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328
Query: 301 QSASAIELFMRMQLEGVVPN 320
+ AI +F +M EG+ P
Sbjct: 329 EPEKAIAVFEKMLEEGIDPT 348
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/485 (24%), Positives = 215/485 (44%), Gaps = 98/485 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K+ K+I L + + FA+ ++ + I D Y++F + R WNT+
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDD---AYKMFDRMPERDLVSWNTI 219
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I GF++ KA L +M P++ T +L A AD L VG H IR G+
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF 279
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
KL ++S T+L + Y+K G + AR +FD
Sbjct: 280 A-----------------------KLVNIS--------TALADMYSKCGSVETARLIFDG 308
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
M +K VSW++M++GYVQ ++A+ F M G P I+ AL ACA LG L++G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+++H +VD+ + DI + ++I MY+KC ++ A +F+++ R ++ ++I G A +
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428
Query: 300 DQSASAIELFMRMQLEGVVPNE--------SMSE---------IYG------IEPGVQHY 336
+ + A+ F M+ G+ P+ +++E I+G ++ +
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT 488
Query: 337 GCLVDLLGRAGMLEAAKKV----------------------------------VREMPIE 362
LVD+ + G + A+K+ +++ +E
Sbjct: 489 TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548
Query: 363 PDNYVLGALLNACRVHGDVDLGKETVESL-----VERSLDHEGVHV-LLSNIYASTEQWN 416
P++ ++++AC G VD G +S+ +E S+DH G V LL E W+
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWD 608
Query: 417 GVEKV 421
+E +
Sbjct: 609 FIENM 613
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 24/270 (8%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T L++ ++K G I+ A ++F+ + +K + M+ GY + + AL M+ +
Sbjct: 85 TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P L C L +G+ IH + N ++ T +++MYAKC I+ A +
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEI--- 326
FD MP RD+ ++ ++I+G + + + A+EL +RMQ EG P+ + +++
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264
Query: 327 --------YGIEPG----VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
Y I G V L D+ + G +E A+ + M + ++++
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD-QKTVVSWNSMMDG 323
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVL 404
+G+ + E ++E +D GV ++
Sbjct: 324 YVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353
>gi|334185681|ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g28640
gi|9294278|dbj|BAB02180.1| unnamed protein product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 169/507 (33%), Positives = 260/507 (51%), Gaps = 69/507 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKII-GFCSASDIGDLSH-GYRLFVCLQYRTTFIWNT 58
+KQIK S + G + +A+ K++ F ++ H +F ++ +F+++T
Sbjct: 24 VKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNSFVYDT 83
Query: 59 MIRGFAEKNEP---IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
MIR + ++P ++ F L + D P+ TF F++ AC VG H V+
Sbjct: 84 MIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFFSVGKQIHCWVV 143
Query: 116 RLG-WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+ G + S V G+L +Y + L D AR
Sbjct: 144 KNGVFLSDSHVQTGVLRIYVE------DKLLLD-------------------------AR 172
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++FD++P+ + V W ++NGYV+ L E LE F M + G P+ + ALTACA +G
Sbjct: 173 KVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVG 232
Query: 235 ALDQGRWIHAYVDRNG-IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
AL QG+WIH +V + IE D+ +GTA++DMYAKCGCIETA VF + R+VF++ +LI
Sbjct: 233 ALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALI 292
Query: 294 SGLANHDQSASAIELFMRMQLE-GVVPN------------------------ESMSEIYG 328
G A + + A+ R++ E G+ P+ E+M Y
Sbjct: 293 GGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYE 352
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
I P +HY C+VDL+ RAG L+ A ++ +MP++P V GALLN CR H +V+LG+ V
Sbjct: 353 ITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAV 412
Query: 389 ESLVERSL----DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
++L++ + E V LSNIY S ++ KVR +E VRK PG S++EVDG
Sbjct: 413 KNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGN 472
Query: 445 VCEFVSGE--RTNVLMEEIVLLLFGID 469
V +FVSG+ N+L V+ L +D
Sbjct: 473 VTKFVSGDVSHPNLLQIHTVIHLLSVD 499
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 263/490 (53%), Gaps = 58/490 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++++Q +HL V+G + K++ A+ G +++ RLF + +F++N++I
Sbjct: 23 LRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAA--GSIAYTRRLFRSVSDPDSFLFNSLI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ ++ + A Y++ML S +P+ YTF+ +++ACAD S L +G + H+ V G+
Sbjct: 81 KASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYA 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV +LI YAKS +AR++FD+M
Sbjct: 141 SDSFV-------------------------------QAALIAFYAKSCTPRVARKVFDEM 169
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+++ V+W++MI+GY Q L EA+E FN M+ P+ A V L+AC+ LG+LD G
Sbjct: 170 PQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGC 229
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H + +GI ++++L T++++M+++CG + A +VF SM +V +T++ISG H
Sbjct: 230 WLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHG 289
Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
A+E+F RM+ GVVPN SM + YG+ PGV+H+
Sbjct: 290 YGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHH 349
Query: 337 GCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
C+VD+ GR G+L A + V+ + E V A+L AC++H + DLG E E+L+
Sbjct: 350 VCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAE 409
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
++ G +VLLSN+YA + + VE VR M ++K G S I+VD F G++++
Sbjct: 410 PENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSH 469
Query: 456 VLMEEIVLLL 465
EI L
Sbjct: 470 PETNEIYCFL 479
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/478 (33%), Positives = 254/478 (53%), Gaps = 74/478 (15%)
Query: 52 TTFIWNTMIRGFAEKN-EPIKAFALYKQML---RSDFLPNNYTFSFILRACADTSCLFVG 107
+F WN +I+ +++ KA LYK ++ ++ P+ +T+ F+L+ACA LF G
Sbjct: 45 NSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEG 104
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
HA V++LG+E ++ N L+H YA+C
Sbjct: 105 KQVHAHVLKLGFELDTYICNSLIHFYASC------------------------------- 133
Query: 168 GQISIARQMFDKMPE-KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226
G + AR++FD+M E +N VSW+ MI+ Y +V + L F M + + P+ +
Sbjct: 134 GYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEM-MKVYEPDCYTMQSV 192
Query: 227 LTACAFLGALDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ AC LG+L G W+HA+V D+N + D+++ T ++DMY KCG +E A VF+ M
Sbjct: 193 IRACGGLGSLSLGMWVHAFVLKKCDKN-VVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMS 251
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPN--------------------- 320
RDV ++ S+I G A H ++ +A++ F+RM ++E +VPN
Sbjct: 252 YRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGL 311
Query: 321 ---ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC-R 376
E M++ Y +EP + HYGCLVDL RAG ++ A VV EMPI+PD + +LL+AC +
Sbjct: 312 MYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYK 371
Query: 377 VHGDVDLGKETVESLVERSLDH-EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
H V+L +E + + E + G +VLLS +YAS +WN V +R+ M D V K PG
Sbjct: 372 QHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPG 431
Query: 436 CSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLD 493
CSLIE++G EF +G+ + ++I + I + L+S+ + D G L+D
Sbjct: 432 CSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPD-----YSGAPLID 484
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFI 94
G L ++F + YR WN++I GFA + A + +M++ + +PN+ TF +
Sbjct: 238 GSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGV 297
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNG-LLHLYATCNCMDPARKLF-DMSVNR 152
L AC + + GL+ + + V G L+ LYA + A + +M +
Sbjct: 298 LSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKP 357
Query: 153 DVISWTSLING-YAKSGQISIARQMFDKMPEKN 184
D + W SL++ Y + + ++ +M ++ E N
Sbjct: 358 DAVIWRSLLDACYKQHASVELSEEMAKQIFESN 390
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 260/510 (50%), Gaps = 61/510 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWD-PFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
M++ KQ+ + + W+ F ++ C+ SD G + + +F + TF +NTM
Sbjct: 1 MEEFKQVHAQVLK----WENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTM 56
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
IRG+ A LY +ML +N+T+ + +ACA + G+ H + + G
Sbjct: 57 IRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGL 116
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E FV N SLIN Y K G+I ++ +F+
Sbjct: 117 EGDLFVQN-------------------------------SLINMYGKCGKIELSCSVFEH 145
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQ 238
M ++ SWSA+I + + ++ E L F M G RP + +V L+AC LGALD
Sbjct: 146 MDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDL 205
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GR H + RN E+++I+ T++IDMY KCGCIE S+F M ++ +Y+ +I+GLA
Sbjct: 206 GRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAM 265
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H + A+++F M EG+ P++ M +GIEP +Q
Sbjct: 266 HGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQ 325
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+V L+GRAGML A + +R MPI+P+ V LL+AC+ H ++++G+ +SL E
Sbjct: 326 HYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGEL 385
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ + G +V+LSN+YA ++W V K+R M + PG SL++V+ + +FVS + +
Sbjct: 386 NSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMS 445
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+ + + ++ ++ LK + D ++V
Sbjct: 446 HPQCKGMYEMIHQMEWQLKFEGYSPDTSQV 475
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 254/478 (53%), Gaps = 28/478 (5%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSF 93
+G + F + R WN+MI GF ++ ++A ++ +MLR L P+ +T +
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L ACA+ L +G H+ ++ G++ VLN L+ +Y+ C ++ AR+L + +D
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 154 --VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+ +T+L++GY K G ++ A+ +F + +++ V+W+AMI GY Q + EA+ F M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G RPN + L+ + L +L G+ IH ++G + + A+I MYAK G I
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 272 ETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN---------- 320
+A FD + RD ++TS+I LA H + A+ELF M +EG+ P+
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 321 --------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
+ M ++ I P + HY C+VDL GRAG+L+ A++ + +MPIEPD
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
G+LL+ACRVH ++DLGK E L+ ++ G + L+N+Y++ +W K+R+ M+
Sbjct: 585 TWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
D V+K G S IEV V F + T+ EI + + I +K + + D V
Sbjct: 645 DGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASV 702
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 193/427 (45%), Gaps = 63/427 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S GD+ F L R + W TMI G+ + KA + M++ P +T +
Sbjct: 91 SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP--ARKLFDMSV 150
+L + A T C+ G H+ +++LG V N LL++YA C DP A+ +FD V
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCG--DPMMAKFVFDRMV 208
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
RD+ SW ++I + + GQ+ +A F++M E++ V+W++MI+G+ Q AL+ F+
Sbjct: 209 VRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSK 268
Query: 211 M-QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M + P+ + L+ACA L L G+ IH+++ G ++ I+ A+I MY++CG
Sbjct: 269 MLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG 328
Query: 270 CIET---------------------------------ACSVFDSMPNRDVFAYTSLISGL 296
+ET A ++F S+ +RDV A+T++I G
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESM-----------------SEIYG--IEPG----V 333
H AI LF M G PN +I+G ++ G V
Sbjct: 389 EQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSV 448
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
L+ + +AG + +A + + E D +++ A HG + E E+++
Sbjct: 449 SVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLM 508
Query: 394 RSL--DH 398
L DH
Sbjct: 509 EGLRPDH 515
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 172/343 (50%), Gaps = 17/343 (4%)
Query: 105 FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY 164
F + H +VI+ G +++N L+++Y+ ARKLFD R SW ++++ Y
Sbjct: 31 FTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAY 90
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
+K G + + FD++P++++VSW+ MI GY + + +A+ M G P +
Sbjct: 91 SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L + A ++ G+ +H+++ + G+ ++ + ++++MYAKCG A VFD M R
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG 344
D+ ++ ++I+ Q A+ F +M +V SM G G DL
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMIS------GFNQRG--YDL-- 260
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404
RA L+ K++R+ + PD + L ++L+AC + +GK+ +V D G ++
Sbjct: 261 RA--LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISG--IV 316
Query: 405 LSNIYASTEQWNGVEKVRRGMEDNEVR--KVPGCSLIEVDGVV 445
L+ + + + GVE RR +E + K+ G + + +DG +
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTAL-LDGYI 358
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 165/496 (33%), Positives = 247/496 (49%), Gaps = 56/496 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQI + G K + F S +S ++F +Q F WNTMIRG
Sbjct: 50 KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109
Query: 63 FAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
FAE P A L+ QM S LP+ +TF F+ +A A + +G H+ V+R G++S
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV N L+H+Y+ + A ++F++ RD ++W S+ING+A +G MP
Sbjct: 170 LRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNG-----------MP 218
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
EAL + M G P+ +V L+AC LGAL G
Sbjct: 219 --------------------NEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGER 258
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H Y+ + G+ + A++D+Y+KCG A VFD M R V ++TSLI GLA +
Sbjct: 259 VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGL 318
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
A++LF ++ +G+ P+E M E YGI P ++H+G
Sbjct: 319 GNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHG 378
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLL RAG + A +R MP+ P+ + LL AC +HG ++LG+ +
Sbjct: 379 CMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQR 438
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
H G VLLSN+YAS +W V+ VR+ M V+K PG SL+E+ V EF+ G+R++
Sbjct: 439 HSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQ 498
Query: 458 MEEIVLLLFGIDKHLK 473
EE +L I + LK
Sbjct: 499 SEETYAMLAKITQLLK 514
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 214/367 (58%), Gaps = 27/367 (7%)
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+Y +C + ARK+FD + R+ +SW ++++GYAK G + ARQ+F+ MP+++ VSWS+M
Sbjct: 1 MYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSM 60
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I+G V+ + AL F M++ G + N +V L ACA LGAL+QGR +H Y+ N +
Sbjct: 61 IDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTM 120
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELF 309
++L T+++DMYAKCG IE A +VF +P DV + ++I GLA H ++ELF
Sbjct: 121 RFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELF 180
Query: 310 MRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGR 345
MQ+ G+VP+E S+ + G+ P +HY C+VD+L R
Sbjct: 181 KEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGK-QGMVPKSEHYACMVDVLSR 239
Query: 346 AGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405
AG L A + +MP+EP +LGALLN C H DL + L+E DH+G ++ L
Sbjct: 240 AGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGL 299
Query: 406 SNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
SN+YA + W+ +R ME V+K PG S +EV G + F++ ++T+ +E+I ++L
Sbjct: 300 SNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVLGTLHRFIAHDKTHNDLEKIYMML 359
Query: 466 FGIDKHL 472
I + +
Sbjct: 360 NTIVRQM 366
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 119/271 (43%), Gaps = 11/271 (4%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ ++F + R + WN M+ G+A+ + A +++ M D + ++S ++
Sbjct: 6 GDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVV----SWSSMI 61
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK----LFDMSVN 151
C V L ++ +G ++ + + +L A ++ R + D ++
Sbjct: 62 DGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMR 121
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFN 209
++ TSL++ YAK G I A +F +P + + + W+ +I G L E+LE F
Sbjct: 122 FTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFK 181
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
MQ+ G P+ + +ACA G + + + + G+ ++D+ ++ G
Sbjct: 182 EMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRAG 241
Query: 270 CIETACSVFDSMPNRDVFAYT-SLISGLANH 299
+ A MP + +L++G NH
Sbjct: 242 QLAEAYDFIAQMPMEPTASMLGALLNGCMNH 272
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/433 (33%), Positives = 236/433 (54%), Gaps = 28/433 (6%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD--TSCLFVGLI 109
T W + I + + +A + M + PN+ TF +L AC + + + +
Sbjct: 32 TIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFPSGSEALSDL 91
Query: 110 CHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H +LG + S+ V +L +Y+ + AR +FD +++ ++W ++I+GY ++G
Sbjct: 92 LHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNG 151
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
Q+ A ++FD+MPE++ +SW+AMI G+V+ +EAL F MQ+ G P++ I+ AL
Sbjct: 152 QVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALA 211
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC LGAL G W H YV ++ + ++ID+Y +CGC+E A VFD+M R V +
Sbjct: 212 ACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVS 271
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMS 324
+ S+I G A + + ++ F +MQ EG P+ + M
Sbjct: 272 WNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMK 331
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGD-VDL 383
Y I P ++H+GCLVDL RAG LE A KVV MP++P+ V+G+LL ACR HG+ L
Sbjct: 332 TDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTIL 391
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
+ ++ + + + +V+LSN+YA+ +W G K+RR M+ ++K PG S IE+D
Sbjct: 392 AERLMKHISDLDVKGHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDD 451
Query: 444 VVCEFVSGERTNV 456
F++G+ +V
Sbjct: 452 YTHVFMAGDNAHV 464
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 139/326 (42%), Gaps = 45/326 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + ++F + R W MI GF +K +A A +++M S P+ L
Sbjct: 151 GQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAAL 210
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H V+ + + V N L+ LY C C++ AR++FD R V+
Sbjct: 211 AACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVV 270
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G+A +G + E+L +F MQ G
Sbjct: 271 SWNSVIVGFAANGNAN-------------------------------ESLVYFRKMQEEG 299
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F+P+ GALTAC+ +G +++G ++ I I ++D+Y++ G +E A
Sbjct: 300 FKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDA 359
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
V +SMP + + SL++ NH E M+ + V S
Sbjct: 360 IKVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKHISDLDVKGHS----------- 408
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A K+ R+M
Sbjct: 409 -NYVILSNMYAADGKWEGASKMRRKM 433
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 22/216 (10%)
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL- 233
Q ++ + VSW++ I + D EA F+ M+L G PNH + L+AC
Sbjct: 23 QKLNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFP 82
Query: 234 -GALDQGRWIHAYVDRNGIELD-IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
G+ +H Y + G++ +++GTAI+ MY+K G + A VFD M +++ + +
Sbjct: 83 SGSEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNT 142
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
+I G + Q +A+++F M ++ + ++ + G E
Sbjct: 143 MIDGYMRNGQVDNAVKVFDEMPERDLIS----------------WTAMITGFVKKGFHEE 186
Query: 352 AKKVVREMPIE---PDNYVLGALLNACRVHGDVDLG 384
A REM I PD + A L AC G + G
Sbjct: 187 ALAWFREMQISGVNPDYVAIIAALAACTNLGALSFG 222
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/461 (31%), Positives = 238/461 (51%), Gaps = 55/461 (11%)
Query: 41 GYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD 100
G ++F + WN ++ GF + + ++ QML F PN +TF +LR+C+
Sbjct: 206 GNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSS 265
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
G HA +I+ + DFV L+ +YA C++ A
Sbjct: 266 LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDA------------------ 307
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
G A FD++ ++ SW+ +I+GY Q D ++A+++F MQ G +PN
Sbjct: 308 --GVA-----------FDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNE 354
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
+ L+ C+ + L+ GR +HA + G DI +G+A++D+Y KCGC+E A ++F
Sbjct: 355 YTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKG 414
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
+ +RD+ ++ ++ISG + H Q A+E F M EG++P+E
Sbjct: 415 LISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEG 474
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
SMS+IYGI P ++HY C+VD+LGRAG K + EM + P + + +L AC+
Sbjct: 475 KKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACK 534
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
+HG+VD G++ + L E + ++LLSNI+AS +W+ V +R M ++K PGC
Sbjct: 535 LHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGC 594
Query: 437 SLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
S +EVDG V F+S + ++ + EI L + + L S+ +
Sbjct: 595 SWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGY 635
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 182/392 (46%), Gaps = 60/392 (15%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G + ++F ++ W+ MI G ++ +A L+ M R PN +T S
Sbjct: 97 SKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLS 156
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
++ + L G H + + G+ES + V N L+ +Y C++ K+F+ N
Sbjct: 157 SLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNP 216
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D++SW +L++G+ S ++F + M
Sbjct: 217 DLVSWNALLSGFYDSQTCGRGPRIFYQ-------------------------------ML 245
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
L GF+PN + L +C+ L + G+ +HA++ +N + D +GTA++DMYAK C+E
Sbjct: 246 LEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLE 305
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMS 324
A FD + NRD+F++T +ISG A DQ+ A++ F +MQ EG+ PNE S
Sbjct: 306 DAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCS 365
Query: 325 EIYGIEPGVQ---------HYG------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ +E G Q H+G LVDL G+ G +E A+ + + + I D
Sbjct: 366 HMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWN 424
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
+++ HG G++ +E+ R + EG+
Sbjct: 425 TIISGYSQHGQ---GEKALEAF--RMMLSEGI 451
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 131/278 (47%), Gaps = 31/278 (11%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
RLF + + WN ++ G+A+ + K L+ +M + + +T S +L+ CA+T
Sbjct: 6 RLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTG 65
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L G + HA +R G E +F+ C SL++
Sbjct: 66 SLREGKVLHALALRSGCEIDEFL-----------GC--------------------SLVD 94
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
Y+K G + A ++F K+ + V+WSAMI G Q +EA E F+ M+ G RPN
Sbjct: 95 MYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFT 154
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
+ ++ +G L G+ IH + + G E D ++ +I MY K C+E VF++M
Sbjct: 155 LSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT 214
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
N D+ ++ +L+SG + +F +M LEG PN
Sbjct: 215 NPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPN 252
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 92/152 (60%)
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ +A ++F MPEKN VSW+A++NGY Q+ K+ L+ F M+ C + + + L
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA G+L +G+ +HA R+G E+D LG +++DMY+KCG + A VF + N DV A+
Sbjct: 61 CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+++I+GL A ELF M+ +G PN+
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQ 152
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 161/531 (30%), Positives = 272/531 (51%), Gaps = 91/531 (17%)
Query: 31 SASDIGDLSHGYRLFVCLQYRT-TFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNN 88
SAS +G + + +LF R +F+ N+MI+ + E + +FALY+ + + F P+N
Sbjct: 20 SASAVG-IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDN 78
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+TF+ + ++C+ + C++ GL H+Q+ R G+ + +V G++ +YA M AR FD
Sbjct: 79 FTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDE 138
Query: 149 SVNRDVISWTSLINGY--------------------------------AKSGQISIARQM 176
+R +SWT+LI+GY KSG ++ AR++
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 177 FDKMPEKNAVSWSAMINGYVQV-------DLF------------------------KEAL 205
FD+M K ++W+ MI+GY + LF +E +
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGI 258
Query: 206 EHFNYMQ-LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
F MQ P+ I+ L A + GAL G W H +V R ++ + + TAI+DM
Sbjct: 259 RLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDM 318
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE--------- 315
Y+KCG IE A +FD MP + V ++ ++I G A + + +A++LF+ M +E
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITML 378
Query: 316 ---------GVVPN-----ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
G+V M E+ G+ ++HYGC+VDLLGRAG L+ A+ ++ MP
Sbjct: 379 AVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPF 437
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
EP+ +L + L+AC + D++ + ++ VE ++G +VLL N+YA+ ++W+ V
Sbjct: 438 EPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMV 497
Query: 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
+ M N+ +K GCSLIE++ +V EF+SG+ T+ I L+L + H+
Sbjct: 498 KNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDLLMHM 548
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+C +I D+ +LF + R WNTMI G+ + +P + L+++M + L
Sbjct: 214 IHGYC---NIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSL 270
Query: 86 -PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
P++ T +L A +DT L +G CH V R + V +L +Y+ C ++ A++
Sbjct: 271 DPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKR 330
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+FD + V SW ++I+GYA +G A +F M + +E
Sbjct: 331 IFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTM-------------------MIEE- 370
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIID 263
+P+ ++ +TAC G +++GR W H + G+ I ++D
Sbjct: 371 ------------KPDEITMLAVITACNHGGLVEEGRKWFHV-MREMGLNAKIEHYGCMVD 417
Query: 264 MYAKCGCIETACSVFDSMP 282
+ + G ++ A + +MP
Sbjct: 418 LLGRAGSLKEAEDLITNMP 436
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 121/254 (47%), Gaps = 26/254 (10%)
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS-AMINGYVQVDLFKEALEH 207
++ +V +T + A + I AR++FD+ P+++ S +MI Y++ + ++
Sbjct: 5 AIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFAL 64
Query: 208 FNYM--QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
+ + + C F P++ +C+ + QG +H+ + R G D+ + T ++DMY
Sbjct: 65 YRDLRKETC-FAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMY 123
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325
AK G + A + FD MP+R ++T+LISG + A +LF +M
Sbjct: 124 AKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM------------- 170
Query: 326 IYGIEPGVQH---YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
P V+ Y ++D ++G + +A+++ EM + + C + D+D
Sbjct: 171 -----PHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIK-DID 224
Query: 383 LGKETVESLVERSL 396
++ +++ ER+L
Sbjct: 225 AARKLFDAMPERNL 238
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 219/416 (52%), Gaps = 25/416 (6%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R F W MI F + +A ++ M R + + ++ ACA + + G +C
Sbjct: 229 RDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELC 288
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H VIR G S + N L+H+Y+ C + AR+LFD D SW S+I GY K+G +
Sbjct: 289 HGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHV 348
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A +F MP+K+ VSWS MI+G VQ + AL F+ M+ G RP+ IV ++AC
Sbjct: 349 ENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISAC 408
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
L AL++G+ +H YV +N + ++LGT++IDMY KCG +E A VF+ M + +
Sbjct: 409 TNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWN 468
Query: 291 SLISGLANHDQSASAIELFMRMQLEGV-VPNES------------------------MSE 325
++I GLA + ++E+F M+ +PNE M
Sbjct: 469 AVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQH 528
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y I P ++HYGC+VDLLGRAG ++ A+ ++ MP+ PD GALL AC HG+ ++G+
Sbjct: 529 KYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHGENEVGE 588
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
LV H+G +LSNIYA W V +R M+ V KV G S++E+
Sbjct: 589 RVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYSVVEM 644
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 109/446 (24%), Positives = 193/446 (43%), Gaps = 90/446 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI--GDLSHGYRLFVCLQYRTTFIWNT 58
++ + QI SG L D FA +++ F SA+ + + H +RL ++ F NT
Sbjct: 17 VRHLLQIHGQFIASGLLADAFAASRLLLFTSATRLLPFPIHHSFRLLRLVRCPNAFSCNT 76
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+++ P LY + S P+ YT + ACA + G + IR G
Sbjct: 77 LLKAALLAGMPHLCLPLYTSLPAS---PDTYTHPILAAACAARRDVSEGRQVQSHAIRHG 133
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ ++ N L+H+Y+ C C+ AR++FD D +SW +++ Y +G + A +F
Sbjct: 134 FGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFA 193
Query: 179 KMPEKNAV-------------------------------SWSAMINGYVQVDLFKEALEH 207
+MP++NA +W+AMI+ + + D+F EAL
Sbjct: 194 RMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHM 253
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
F+ M+ + + A +V + ACA + G H V R G+ + + +I MY+
Sbjct: 254 FSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSC 313
Query: 268 C-------------------------------GCIETACSVFDSMPNRDVFAYTSLISGL 296
C G +E A ++F +MP++D +++++ISG
Sbjct: 314 CLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGC 373
Query: 297 ANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG------VQHYGC---- 338
++QS+ A+ +F M+ +GV P+E + + + +E G V+ C
Sbjct: 374 VQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITL 433
Query: 339 -----LVDLLGRAGMLEAAKKVVREM 359
L+D+ + G LEAA V M
Sbjct: 434 VLGTSLIDMYMKCGYLEAAMDVFNIM 459
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 11/273 (4%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
D+ RLF F WN+MI G+ + A L+ M D N ++S ++
Sbjct: 316 DVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKD----NVSWSTMIS 371
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVI 155
C + L + G + + ++ + ++ + + D + N+ I
Sbjct: 372 GCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYI 431
Query: 156 SW---TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+ TSLI+ Y K G + A +F+ M EK A W+A+I G L ++LE F+ M+
Sbjct: 432 TLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEME 491
Query: 213 LCGFR-PNHAGIVGALTACAFLGALDQGRWIHAYVD-RNGIELDIILGTAIIDMYAKCGC 270
PN G L+AC G +++GR + + I +I ++D+ + G
Sbjct: 492 ASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGY 551
Query: 271 IETACSVFDSMP-NRDVFAYTSLISGLANHDQS 302
++ A + +SMP + DV A+ +L+ H ++
Sbjct: 552 VKEAEDLIESMPMSPDVPAWGALLGACWKHGEN 584
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 159/519 (30%), Positives = 257/519 (49%), Gaps = 57/519 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ ++K+IQ+H+ V+G P I+ FC+ S G L + LF + T WN++I
Sbjct: 22 LTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSII 81
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RGFA+ P++A Y +ML P+ +TFSF L+AC L H +IR G+
Sbjct: 82 RGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGY 141
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E RDV+ T L+ Y ++G + IAR +FD
Sbjct: 142 E-------------------------------RDVVVCTGLVRCYGRNGCVEIARMVFDN 170
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE++ V+W+AMI+ Y Q +EAL ++YM+ + +VG L++C+ +GAL+ G
Sbjct: 171 MPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMG 230
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+H G+ ++ +G A+IDMYAKCG ++ A VF+ MP RD F + S+I G H
Sbjct: 231 VKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVH 289
Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
AI F +M GV PN MS + ++PG++H
Sbjct: 290 GFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKH 349
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VD+ GRAG LE A +++ + P + D + LL++ ++H +V +G+ + +L +
Sbjct: 350 YGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLG 409
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+ G VLL+ IYA GV ++R+ ++ ++ PG S IEV V FV ++++
Sbjct: 410 AVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSH 469
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDC 494
E I L + + +D ++ G +C
Sbjct: 470 PDSEMIYQKLEEVTHKATMAGYVEDKSQFIFHGSCSEEC 508
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/423 (33%), Positives = 224/423 (52%), Gaps = 60/423 (14%)
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG---------- 128
+L LP++ + SF L C+ V + H+ +RLG +V+N
Sbjct: 62 LLNHRLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAAD 121
Query: 129 -----------------------LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYA 165
++ +A ++ AR FD ++V+SW +++ YA
Sbjct: 122 VASAERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYA 181
Query: 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
++G + AR++FD+MP +NA +W +MI G +Q D +EAL F+ M G PN +V
Sbjct: 182 RAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVS 241
Query: 226 ALTACAFLGALDQGRWIHAYVDR--NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
++AC L ++ G W+H Y +R NG + +L TAI+DMY KCG I A VF +MP
Sbjct: 242 TVSACTQLRWMEHGTWVHGYAERELNG-AMSAVLATAIVDMYGKCGSIRDAVRVFAAMPV 300
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------------------- 321
R+++++ S+I+GLA + A+ LF +MQL GV PN+
Sbjct: 301 RNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWL 360
Query: 322 --SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
M +GI+P +HYG +VDLLGR+G + A V+ MP+EP + GAL AC++HG
Sbjct: 361 FYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHG 420
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+V+LG+E + L+E H ++LLSNIYA++ +W+ + VRR ++D +V K G +++
Sbjct: 421 EVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
Query: 440 EVD 442
D
Sbjct: 481 GND 483
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 31/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +LF + R W +MI G + + +A ++ M+ S +PN +
Sbjct: 184 GMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTV 243
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + G H R LNG + +
Sbjct: 244 SACTQLRWMEHGTWVHGYAER--------ELNGAM----------------------SAV 273
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T++++ Y K G I A ++F MP +N SW++MI G ++AL F MQL G
Sbjct: 274 LATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAG 333
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
RPN +G L+AC+ G +D+GRW+ + V+ GI+ ++D+ + G + A
Sbjct: 334 VRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREA 393
Query: 275 CSVFDSMP 282
SMP
Sbjct: 394 VDFVKSMP 401
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 231/406 (56%), Gaps = 28/406 (6%)
Query: 79 MLRSDFLPNNYTFSFILRACAD--TSCLFVGLICHAQVIRLGWE-SYDFVLNGLLHLYAT 135
M + F PN+ TF ++ C D T +G + H +LG + ++ V +L +Y+
Sbjct: 8 MRLAGFEPNHITFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSK 67
Query: 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY 195
AR +FD +++ ++W ++I+ Y +SG++ A ++FD+MP+ + +SW+AMING+
Sbjct: 68 RCRFGKARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGF 127
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
V+ +EAL F MQ+ G +P++ I+ AL AC LGAL G W+H YV + ++
Sbjct: 128 VKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNV 187
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+ ++ID+Y +CGC+E A VFD M R V ++ S+I G A + + ++ F +MQ E
Sbjct: 188 RVNNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEE 247
Query: 316 GVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
G P+ ++M Y I P ++HYGCLVDL RAG LE
Sbjct: 248 GFNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLED 307
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHG-DVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A K+V+ M ++P+ V+G+LL ACR HG + +L + ++ L E ++ +V+LSN+YA
Sbjct: 308 ALKLVQSMSMKPNEVVIGSLLAACRTHGNNTELAERLMKHLSEMNVKGHSNYVILSNMYA 367
Query: 411 STEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+ +W G K+RR M+ ++K PG S IE+D F++G+ +V
Sbjct: 368 ADGKWEGAXKMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDSAHV 413
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 134/328 (40%), Gaps = 49/328 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +LF + W MI GF +K +A +++M S P+ L
Sbjct: 100 GKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAAL 159
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H V+ +++ V N L+ LY C C++ AR++FD R V+
Sbjct: 160 AACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRTVV 219
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I G A +G E+L +F MQ G
Sbjct: 220 SWNSVIVGSAANGNA-------------------------------HESLVYFRKMQEEG 248
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETA 274
F P+ GALTAC+ +G +++G + R+ I I ++D+Y++ G +E A
Sbjct: 249 FNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDA 308
Query: 275 CSVFDSM---PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
+ SM PN V SL++ H + E M+ E V S
Sbjct: 309 LKLVQSMSMKPNEVVIG--SLLAACRTHGNNTELAERLMKHLSEMNVKGHS--------- 357
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A K+ R+M
Sbjct: 358 ---NYVILSNMYAADGKWEGAXKMRRKM 382
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 157/504 (31%), Positives = 253/504 (50%), Gaps = 57/504 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+I S + +G D +I S G + +F + + W MI G A
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISM--YSRCGSIKDARLVFDKMVRKDVISWTAMIGGLA 405
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +A +Y++M ++ PN T++ IL AC+ + L G H QV+ G +
Sbjct: 406 KSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAH 465
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N L+++Y+ C G + ARQ+FD+M +++
Sbjct: 466 VGNTLVNMYSMC-------------------------------GSVKDARQVFDRMIQRD 494
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V+++AMI GY +L KEAL+ F+ +Q G +P+ + L ACA G+L+ R IH
Sbjct: 495 IVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHT 554
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
V + G D +G A++ YAKCG A VF+ M R+V ++ ++I G A H +
Sbjct: 555 LVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQD 614
Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
A++LF RM++EGV P+ SMS+ + I P ++HYGC+V
Sbjct: 615 ALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMV 674
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ A+ +++ MP + + + GALL ACR+HG+V + + ES ++ LD+
Sbjct: 675 DLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAV 734
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
V+V LS++YA+ W+ K+R+ ME V K PG S I+V + FV+ +R++ E+
Sbjct: 735 VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEK 794
Query: 461 IVLLLFGIDKHLKSLCFFDDGNEV 484
I L + +K + D V
Sbjct: 795 IYAELDRLTHAMKMKGYVPDTRSV 818
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 167/357 (46%), Gaps = 46/357 (12%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
++F L R WNTMI G AE +A +Y QM R +PN T+ +L AC +++
Sbjct: 283 QVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSA 342
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L G H++V + G+ S V N L+ +Y+ C + AR +FD V +DVISWT++I
Sbjct: 343 ALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIG 402
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
G AKSG EAL + MQ G PN
Sbjct: 403 GLAKSG-------------------------------FGAEALTVYQEMQQAGVEPNRVT 431
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
L AC+ AL+ GR IH V G+ D +G +++MY+ CG ++ A VFD M
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI 491
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342
RD+ AY ++I G A H+ A++LF R+Q EG+ P++ Y +++
Sbjct: 492 QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT------------YINMLNA 539
Query: 343 LGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+G LE A+++ VR+ D V AL++ G E + +R++
Sbjct: 540 CANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNV 596
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 146/319 (45%), Gaps = 35/319 (10%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RTTFIWNTMIRG 62
+Q+ H+ T+ D + V +I G + +++ L Y RT WN M+ G
Sbjct: 43 RQVHQHIIQHRTVPDQYTVNALINM--YIQCGSIEEARQVWKKLSYMERTVHSWNAMVVG 100
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ + KA L +QM + P+ T L +C L G H Q ++ G
Sbjct: 101 YIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGL--- 157
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
LFD+ V ++N YAK G I AR++FDKM +
Sbjct: 158 ----------------------LFDVKVA------NCILNMYAKCGSIEEAREVFDKMEK 189
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ VSW+ I GY + A E F M+ G PN + L A + AL G+ +
Sbjct: 190 KSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAV 249
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H+ + G E D +GTA++ MYAKCG + VF+ + NRD+ A+ ++I GLA
Sbjct: 250 HSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYW 309
Query: 303 ASAIELFMRMQLEGVVPNE 321
A E++ +MQ EGV+PN+
Sbjct: 310 EEASEVYNQMQREGVMPNK 328
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 165/364 (45%), Gaps = 46/364 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F ++ ++ W I G+A+ AF ++++M + +PN T+ +L
Sbjct: 175 GSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVL 234
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A + + L G H++++ G ES D
Sbjct: 235 NAFSSPAALKWGKAVHSRILNAGHES-------------------------------DTA 263
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+L+ YAK G RQ+F+K+ ++ ++W+ MI G + ++EA E +N MQ G
Sbjct: 264 VGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREG 323
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN V L AC AL G+ IH+ V + G DI + A+I MY++CG I+ A
Sbjct: 324 VMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDAR 383
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335
VFD M +DV ++T++I GLA A A+ ++ MQ GV PN
Sbjct: 384 LVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT------------ 431
Query: 336 YGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
Y +++ LE +++ V E + D +V L+N + G V ++ + ++
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMI 491
Query: 393 ERSL 396
+R +
Sbjct: 492 QRDI 495
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
A++ Y+Q G + N + + L C + L GR +H ++ ++ D A+I+
Sbjct: 7 AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66
Query: 264 MYAKCGCIETACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
MY +CG IE A V+ + R V ++ +++ G + A++L +MQ G+ P+
Sbjct: 67 MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126
Query: 322 S--MSEIYGIE-PGVQHYG--------------------CLVDLLGRAGMLEAAKKVVRE 358
+ MS + + PG +G C++++ + G +E A++V +
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186
Query: 359 MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
M E + V + + G D G+ + + ++ EGV
Sbjct: 187 M--EKKSVVSWTIT----IGGYADCGRSETAFEIFQKMEQEGV 223
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 161/531 (30%), Positives = 272/531 (51%), Gaps = 91/531 (17%)
Query: 31 SASDIGDLSHGYRLFVCLQYRT-TFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNN 88
SAS +G + + +LF R +F+ N+MI+ + E + +FALY+ + + F P+N
Sbjct: 20 SASAVG-IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDN 78
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+TF+ + ++C+ + C++ GL H+Q+ R G+ + +V G++ +YA M AR FD
Sbjct: 79 FTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDE 138
Query: 149 SVNRDVISWTSLINGY--------------------------------AKSGQISIARQM 176
+R +SWT+LI+GY KSG ++ AR++
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 177 FDKMPEKNAVSWSAMINGYVQV-------DLF------------------------KEAL 205
FD+M K ++W+ MI+GY + LF +E +
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGI 258
Query: 206 EHFNYMQ-LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
F MQ P+ I+ L A + GAL G W H +V R ++ + + TAI+DM
Sbjct: 259 TLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDM 318
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE--------- 315
Y+KCG IE A +FD MP + V ++ ++I G A + + +A++LF+ M +E
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITML 378
Query: 316 ---------GVVPN-----ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
G+V M E+ G+ ++HYGC+VDLLGRAG L+ A+ ++ MP
Sbjct: 379 AVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPF 437
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421
EP+ +L + L+AC + D++ + ++ VE ++G +VLL N+YA+ ++W+ V
Sbjct: 438 EPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMV 497
Query: 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
+ M N+ +K GCSLIE++ +V EF+SG+ T+ I L+L + H+
Sbjct: 498 KNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDLLMHM 548
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+C +I D+ +LF + R WNTMI G+ + +P + L+++M + L
Sbjct: 214 IHGYC---NIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSL 270
Query: 86 -PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
P++ T +L A +DT L +G CH V R + V +L +Y+ C ++ A++
Sbjct: 271 DPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKR 330
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+FD + V SW ++I+GYA +G A +F M + +E
Sbjct: 331 IFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTM-------------------MIEE- 370
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIID 263
+P+ ++ +TAC G +++GR W H + G+ I ++D
Sbjct: 371 ------------KPDEITMLAVITACNHGGLVEEGRKWFHV-MREMGLNAKIEHYGCMVD 417
Query: 264 MYAKCGCIETACSVFDSMP 282
+ + G ++ A + +MP
Sbjct: 418 LLGRAGSLKEAEDLITNMP 436
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 121/254 (47%), Gaps = 26/254 (10%)
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWS-AMINGYVQVDLFKEALEH 207
++ +V +T + A + I AR++FD+ P+++ S +MI Y++ + ++
Sbjct: 5 AIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFAL 64
Query: 208 FNYM--QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
+ + + C F P++ +C+ + QG +H+ + R G D+ + T ++DMY
Sbjct: 65 YRDLRKETC-FAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMY 123
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325
AK G + A + FD MP+R ++T+LISG + A +LF +M
Sbjct: 124 AKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM------------- 170
Query: 326 IYGIEPGVQH---YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVD 382
P V+ Y ++D ++G + +A+++ EM + + C + D+D
Sbjct: 171 -----PHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIK-DID 224
Query: 383 LGKETVESLVERSL 396
++ +++ ER+L
Sbjct: 225 AARKLFDAMPERNL 238
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 162/511 (31%), Positives = 264/511 (51%), Gaps = 70/511 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M ++KQ+Q+ +T +G K+I F + S +G+LSH + LF+ +FI NTMI
Sbjct: 18 MLELKQVQAIITKAGLHSHLPFTAKLIFFSALSPMGNLSHAHSLFLQTSMHNSFICNTMI 77
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL---FV----------G 107
R FA + P++A +Y M ++ + +++T++F+L+AC+ FV G
Sbjct: 78 RAFANSSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACSRAHKFAQEFVKCDEFIIISKG 137
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--------------- 152
H V++LG + + N LL +Y+ C + A+ LFD NR
Sbjct: 138 GEVHCTVLKLGLDQDPSIQNSLLCMYSQCGLVHVAQHLFDEISNRSLVSWNIMISAYDRV 197
Query: 153 ----------------DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV 196
+V+SW ++I Y + G I AR++F MP+++AVSW+++I G V
Sbjct: 198 NDSKSADYLLESMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCV 257
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
V ++ A+ F+ MQ RP ++ L ACA GAL+ G IH + G +++
Sbjct: 258 SVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGY 317
Query: 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ--L 314
LG A+++MY+KCG + +A VF+ M + + + ++I GLA H A++LF M+ L
Sbjct: 318 LGNALLNMYSKCGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESGL 377
Query: 315 EGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
+ V PN + M++ Y I P ++HYGC+VDLL R G+LE
Sbjct: 378 DTVRPNRVTFLGVLIACSHKGLVDKARWNFDHMAKQYKILPDIKHYGCIVDLLSRFGLLE 437
Query: 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410
A ++++ P++ + LL ACR G+V+L K + + L + +G +VLLSNIYA
Sbjct: 438 EAHQMIKTAPLQNSAILWRTLLGACRTQGNVELAKVSFQQLAKLGRLTDGDYVLLSNIYA 497
Query: 411 STEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
E+W+ VE+VR M V K S I++
Sbjct: 498 EAERWDEVERVRSEMIGLHVPKQVAYSQIDM 528
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 226/428 (52%), Gaps = 57/428 (13%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+ + R+F ++ F+WNTMIRG +P KAF YK+M + +N+T+SF+++
Sbjct: 1 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C +G H V++ G E + FV N L+H+Y
Sbjct: 61 CGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFK-------------------- 100
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
I A +F++MP+ V+W+ +I+ V +KEA+E F M G +
Sbjct: 101 -----------DIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLK 149
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+ A V L+ACA LG LD GR +H+ +D G+ + + ++IDMYAKCG +E A +
Sbjct: 150 PDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEI 209
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-VPNES-------------- 322
F+ M R++ ++ ++I GLA H A+ELF +M E + PNE
Sbjct: 210 FNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGM 269
Query: 323 ----------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
M Y I+P ++HYG +VD+LGRAG++E A ++++ MPIE ++ V LL
Sbjct: 270 VEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLL 329
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
ACRVHG+++L ++ + L+E DH +VLL+N+YAS QWN V +VR+ M V+K
Sbjct: 330 AACRVHGNLELAEQVRQQLLELEPDHSSDYVLLANMYASAGQWNKVVRVRKSMHIRGVQK 389
Query: 433 V-PGCSLI 439
PG S I
Sbjct: 390 PKPGNSYI 397
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 149/371 (40%), Gaps = 62/371 (16%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
++ H+ V TL + + K D+ LF + WNT+I
Sbjct: 82 LEEHVFVRNTLVHMYGMFK-----------DIEAATHLFEEMPKSYLVAWNTIIDCNVYC 130
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
+A L+ +ML+S P++ TF L ACA L +G H+ + G + V
Sbjct: 131 GRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVS 190
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N L+ +YA C ++ A ++F+ R+++SW ++I G A G A ++F KM E+
Sbjct: 191 NSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLA 250
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
+ PN +G L AC+ G +++GR +
Sbjct: 251 T------------------------------PNEVTFLGVLCACSHGGMVEEGRRYFDIM 280
Query: 247 DRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSAS 304
R+ I+ I +++D+ + G +E A + SMP + + +L++ H
Sbjct: 281 RRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLEL 340
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI--- 361
A ++ R QL + P+ S Y L ++ AG +V + M I
Sbjct: 341 AEQV--RQQLLELEPDHS-----------SDYVLLANMYASAGQWNKVVRVRKSMHIRGV 387
Query: 362 ---EPDNYVLG 369
+P N +G
Sbjct: 388 QKPKPGNSYIG 398
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 159/500 (31%), Positives = 249/500 (49%), Gaps = 65/500 (13%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFI-WNTMIRG 62
I+ + + + G + D F +I S +S +LFV + R + WN+MI G
Sbjct: 137 IESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISG 196
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
A+ +A ++ +M D + S+
Sbjct: 197 LAKGGLYEEARKVFDEMPEKDGI-----------------------------------SW 221
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ +L+G Y MD A KLFD R+V+SW++++ GY K+G + +AR +FDKMP
Sbjct: 222 NTMLDG----YVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPV 277
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
KN VSW+ +++G+ + L +EA+ F+ M+ + ++ ++ L ACA G L G I
Sbjct: 278 KNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKI 337
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
HA + N + + A++DMYAKCG + A VF+ + N+DV ++ +++ GLA H
Sbjct: 338 HASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHG 397
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
A+ELF RM+ EG PN+ +M Y + P V+HYGC
Sbjct: 398 VKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGC 457
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGR G LE A +++R MP+ P+ + G LL ACR+H V+L +E ++ LVE
Sbjct: 458 MVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTD 517
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G +LSNIYA+ WN V R M +K G S IEV+ V EF +R++
Sbjct: 518 SGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNNEVHEFTVFDRSHPKS 577
Query: 459 EEIVLLLFGIDKHLKSL-CF 477
+ I ++ G+ LK + CF
Sbjct: 578 DNIYQVINGLRHELKQVECF 597
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 156/316 (49%), Gaps = 44/316 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q+KQ+ + + S D F V K+I + S + F +QY ++NTMI
Sbjct: 33 LNQVKQLHAQILKSNLHVDLFVVPKLIS--AFSLCRQMLLATNAFNQVQYPNVHLYNTMI 90
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + ++P +AFA + M R +N+TF F+L+ C L V HAQ+ + G+
Sbjct: 91 RAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFM 150
Query: 121 SYDFVLNGLLHLYATCNC--MDPARKLF-DMSVNRDVISWTSLINGYAKSGQISIARQMF 177
S FV N L+ Y+ C + A+KLF M RDV+SW S+I+G AK G AR++F
Sbjct: 151 SDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVF 210
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MPEK+ +SW+ M++GYV+V +A + F+ M
Sbjct: 211 DEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMP------------------------- 245
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
E +++ + ++ Y K G +E A +FD MP +++ ++T ++SG A
Sbjct: 246 --------------ERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFA 291
Query: 298 NHDQSASAIELFMRMQ 313
+ AI LF +M+
Sbjct: 292 EKGLAREAISLFDQME 307
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 169/558 (30%), Positives = 261/558 (46%), Gaps = 139/558 (24%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-TFIWNTM 59
++ +KQI +HL SG L D F + K+ F IG + + + T +NT+
Sbjct: 18 IRSLKQIHAHLIASGLLHDEFVLSKVSEF-FGKHIGFVDYAFDFLNQTDLHVGTLPYNTL 76
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I +A P AF +Y +++ + F+P+ YTF +L+AC + G H +++G+
Sbjct: 77 IAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGF 136
Query: 120 ESYDFVLNGLLHL-------------------------------YATCNCMDPARKLF-D 147
+V N LLH Y D A LF
Sbjct: 137 LCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLK 196
Query: 148 MSVNRDVISWTSLINGYAKSGQISI----------------------------------- 172
M V +V ++ S++ + G +S+
Sbjct: 197 MDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCE 256
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR++FD++P+++ VSW+++I+G VQ K++LE F MQ+ G P+ + L+ACA
Sbjct: 257 ARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACAS 316
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGALD GRW+ Y++R GIE DI +GTA++DMYAKCGCIE A +F+ +PNR++F + +L
Sbjct: 317 LGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNAL 376
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE-------------------------SMSEIY 327
+ GLA H A++ F M G+ PNE +S+ +
Sbjct: 377 LGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPF 436
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
P ++HYGC++DLL RAG+L+ A
Sbjct: 437 NFSPRLEHYGCMIDLLCRAGLLDEA----------------------------------- 461
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ GV+VLLSNIYA+ E+W+ V +VRR M+D +RK PG S+IEVDG E
Sbjct: 462 ----------YNGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHE 511
Query: 448 FVSGERTNVLMEEIVLLL 465
F+ G+ + E+I +LL
Sbjct: 512 FLVGDTNHSRNEDIHILL 529
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 213/385 (55%), Gaps = 40/385 (10%)
Query: 86 PNNYTFSFILRACA------DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
P+ +F+ +L A A D LFV + QV W N ++ +Y +
Sbjct: 146 PDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQV---SW-------NAMVVVYVNAGDV 195
Query: 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
AR++FD RD SW+ LI GY K G + AR++FD+MP KN V+W+AMINGY Q
Sbjct: 196 SSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSG 255
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
+ KE+L F M+ G P+ A +VG ++A + +G+ + W+ +YVD+ IE + + T
Sbjct: 256 VPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLT 315
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
A++DM+AKCG ++ A S F + D + YT+LISGLA H + A+++F RMQ + V P
Sbjct: 316 ALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWP 375
Query: 320 N------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ E+M + YG+E HY C+VD+LGRAG LE A ++
Sbjct: 376 DPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEM 435
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
V+ MP+ P LGALL+AC+ HG+V++ + L E + G +++LSNIYA EQW
Sbjct: 436 VQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQW 495
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIE 440
E++R M K PG S +E
Sbjct: 496 EEAERIRSVMRTRLPFKQPGSSWVE 520
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 134/335 (40%), Gaps = 64/335 (19%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLLHLYATCNCMDPARK 144
P++++ F L A A L +G HA +RL V N L+ LYA C+ + A
Sbjct: 79 PDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAAHT 138
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
D +S+ SL+ +A+ + A +F MP + VSW+AM+ YV A
Sbjct: 139 ALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSA 198
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
F+ M D W + +I
Sbjct: 199 RRVFDQMP----------------------TRDSTSW-----------------SVLIVG 219
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM- 323
Y KCG + +A VFD MP +++ A+T++I+G A ++ LF M+ G+ P+ +
Sbjct: 220 YCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATM 279
Query: 324 ------------SEIYG----------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
+E+ G IE + LVD+ + G ++ A RE+
Sbjct: 280 VGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREI-A 338
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+PD Y AL++ HG L + E + +S+
Sbjct: 339 QPDAYPYTALISGLAAHGHAKLALQVFERMQAQSV 373
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 35/258 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I+G+C G + +F + + W MI G+A+ P ++ AL+++M +
Sbjct: 217 IVGYCK---CGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIE 273
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T ++ A + + + V + E D VL L+ ++A C +D A
Sbjct: 274 PDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSA 333
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F D +T+LI+G A G +A Q+F++
Sbjct: 334 FREIAQPDAYPYTALISGLAAHGHAKLALQVFER-------------------------- 367
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDM 264
MQ P+ VG LTAC+ G +D+G + A V G+E ++DM
Sbjct: 368 -----MQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDM 422
Query: 265 YAKCGCIETACSVFDSMP 282
+ G +E A + +MP
Sbjct: 423 LGRAGRLEEAFEMVQTMP 440
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 249/471 (52%), Gaps = 56/471 (11%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ + G ++ K++ + S+ L + LF + + F+WN +IRG+A
Sbjct: 67 KQLHAQFYHLGIAYNQDLATKLVHLYAVSN--SLLNARNLFDKIPKQNLFLWNVLIRGYA 124
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
A LY +ML P+N+T F+L+AC+ S + G H VI+ GWE F
Sbjct: 125 WNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLF 184
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V L+ +YA C C+ A ++FD V RD + W S++ YA++G P+++
Sbjct: 185 VGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH-----------PDES 233
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+ L +E M G RP A +V +++ A + L GR IH
Sbjct: 234 -------------ISLCRE-------MAANGVRPTEATLVTVISSSADVACLPYGREIHG 273
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ R+G + + + TA+IDMYAKCG ++ A ++F+ + + V ++ ++I+G A H +
Sbjct: 274 FGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVG 333
Query: 305 AIELFMRMQLE---------GVVPNES--------------MSEIYGIEPGVQHYGCLVD 341
A++LF +M+ E GV+ S M YGI P VQHY C++D
Sbjct: 334 ALDLFDKMRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMID 393
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLG G L+ A ++R M ++PD+ V GALLN+C++HG+V+L + +E L+E D G
Sbjct: 394 LLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGN 453
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+V+L+N+YA + +W GVEK+R+ M D ++K CS IEV V F++G+
Sbjct: 454 YVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGD 504
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 129/274 (47%), Gaps = 38/274 (13%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP---NNYTFSFILRACADTSCLFVGL 108
T+FI+N F + A ++ F P +Y ++ +L++C D+ L G
Sbjct: 12 TSFIFNL----FPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGK 67
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
HAQ LG + L+HLYA N + AR LFD +++ W LI GYA +G
Sbjct: 68 QLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNG 127
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
P NA+ L+ + L++ G RP++ + L
Sbjct: 128 ------------PHDNAII------------LYHKMLDY-------GLRPDNFTLPFVLK 156
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
AC+ L A+ +GR IH YV ++G E D+ +G A+IDMYAKCGC+ A VFD + RD
Sbjct: 157 ACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVL 216
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
+ S+++ A + +I L M GV P E+
Sbjct: 217 WNSMLAAYAQNGHPDESISLCREMAANGVRPTEA 250
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/378 (38%), Positives = 211/378 (55%), Gaps = 24/378 (6%)
Query: 120 ESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
E D V N ++ Y C+ AR+LF+ R+V+SWTS+++GY +G + A+ MFD
Sbjct: 218 EDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFD 277
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
MPEKN +W+AMI GY Q +ALE F MQ PN +V L A A LGALD
Sbjct: 278 LMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDL 337
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
GRWIH + R ++ +GTA+IDMYAKCG I A F+ M R+ ++ +LI+G A
Sbjct: 338 GRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAV 397
Query: 299 HDQSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQH 335
+ + A+E+F RM EG PNE + E +GI P V+H
Sbjct: 398 NGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMERFGIAPQVEH 457
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDLLGRAG L+ A+ +++ MP + + +L + L AC DV + ++ +V+
Sbjct: 458 YGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMD 517
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
D G +V+L N+YA+ ++W VE V++ M+ K CS+IE+ G EF +G+ +
Sbjct: 518 EDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEIGGSFIEFAAGDYLH 577
Query: 456 VLMEEIVLLLFGIDKHLK 473
+E I L L + KH+K
Sbjct: 578 SHLEVIQLTLGQLSKHMK 595
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 164/359 (45%), Gaps = 50/359 (13%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS--DFLPNNYTFSFIL 95
++H R F R TF+ N+MI + + F L++ + R F P+ YTF+ ++
Sbjct: 73 INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+ CA G + H V++ G +V L+ +Y + ARK+FD R +
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT++I GYA+ G +S AR++FD+M +++ V+++AMI+GYV++ A E FN M+
Sbjct: 193 SWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMR--- 249
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
E +++ T+++ Y G +E A
Sbjct: 250 ------------------------------------ERNVVSWTSMVSGYCGNGDVENAK 273
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335
+FD MP ++VF + ++I G + +S A+ELF MQ V PNE + + P V
Sbjct: 274 LMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVT--VVCVLPAVAD 331
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
G L DL KK+ R I AL++ G++ K E + ER
Sbjct: 332 LGAL-DLGRWIHRFALRKKLDRSARIGT------ALIDMYAKCGEITKAKLAFEGMTER 383
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 36/258 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ G+C GD+ + +F + + F WN MI G+ + A L+++M +
Sbjct: 260 VSGYCGN---GDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVE 316
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
PN T +L A AD L +G H +R + + L+ +YA C + A+
Sbjct: 317 PNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLA 376
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F+ R+ SW +LING+A +NG KEAL
Sbjct: 377 FEGMTERETASWNALINGFA--------------------------VNGCA-----KEAL 405
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDM 264
E F M GF PN ++G L+AC G +++G RW +A ++R GI + ++D+
Sbjct: 406 EVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNA-MERFGIAPQVEHYGCMVDL 464
Query: 265 YAKCGCIETACSVFDSMP 282
+ GC++ A ++ +MP
Sbjct: 465 LGRAGCLDEAENLIQTMP 482
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 120/313 (38%), Gaps = 52/313 (16%)
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM--QLCGFRPNHAGIVGAL 227
I+ AR+ F+ ++ ++MI + F + F + Q F P+ +
Sbjct: 73 INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM----------------------- 264
CA A +G +H V +NG+ D+ + TA++DM
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192
Query: 265 --------YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
YA+CG + A +FD M +RD+ A+ ++I G A ELF M+
Sbjct: 193 SWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERN 252
Query: 317 VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML---------------EAAKKVVREM-- 359
VV SM Y V++ + DL+ + A ++ REM
Sbjct: 253 VVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQT 312
Query: 360 -PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG-VHVLLSNIYASTEQWNG 417
+EP+ + +L A G +DLG+ + + LD + L ++YA +
Sbjct: 313 ASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITK 372
Query: 418 VEKVRRGMEDNEV 430
+ GM + E
Sbjct: 373 AKLAFEGMTERET 385
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 192/307 (62%), Gaps = 1/307 (0%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWNTM 59
M ++KQI + + +G++ + + ++ F ++ + G+L++ +F L R T+IWN M
Sbjct: 23 MMELKQIHAQMFKTGSVLETITISELQAFAASPNSGNLTYAKIVFDSLSSRPNTYIWNAM 82
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+RG+A+ N+P +A LY QML N YTF F+L+AC+ S + HAQ+I+LG+
Sbjct: 83 LRGYADSNKPEEALILYHQMLCHSVPHNGYTFPFLLKACSSLSAIEKAQQVHAQIIKLGF 142
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S + N LLH YA ++ AR +FD + D +SW S+I+GY K G+ A ++F
Sbjct: 143 GSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKD 202
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPEKNA+S++ MI+G+VQ L KEAL+ F MQ+ G +P+ + L+ACA LGALDQG
Sbjct: 203 MPEKNAISFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQG 262
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
RWIH Y+ +N +++D +LG A+ DMYAKCG ++ A VF + V +T+LI G A H
Sbjct: 263 RWIHTYIKKNDVQIDPMLGCALTDMYAKCGSMQDALEVFKKTRKKSVSLWTALIHGFAIH 322
Query: 300 DQSASAI 306
+ A+
Sbjct: 323 GRGREAL 329
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 24/225 (10%)
Query: 167 SGQISIARQMFDKMPEK-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225
SG ++ A+ +FD + + N W+AM+ GY + +EAL ++ M LC P H G
Sbjct: 57 SGNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQM-LCHSVP-HNGYTF 114
Query: 226 A--LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
L AC+ L A+++ + +HA + + G D+ +++ YA G IE+A +FD +P+
Sbjct: 115 PFLLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPH 174
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343
D ++ S+I G ++ +A ELF M + + M I VQ
Sbjct: 175 PDTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVM-----ISGHVQ--------- 220
Query: 344 GRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGK 385
AG+ + A + +EM I+PD VL +L+AC G +D G+
Sbjct: 221 --AGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGR 263
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 10/218 (4%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ +Q+ + + G D + ++ +AS G + +F + + T WN++I
Sbjct: 127 IEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAAS--GFIESARIIFDRIPHPDTVSWNSII 184
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+ + E A+ L+K M + + S ++A D L L Q+ G +
Sbjct: 185 DGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEAL--DLFQEMQIA--GIK 240
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV----ISWTSLINGYAKSGQISIARQM 176
VL +L A +D R + DV + +L + YAK G + A ++
Sbjct: 241 PDKIVLTNVLSACAHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCGSMQDALEV 300
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
F K +K+ W+A+I+G+ +EAL + C
Sbjct: 301 FKKTRKKSVSLWTALIHGFAIHGRGREALYCLQLYRAC 338
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 165/496 (33%), Positives = 247/496 (49%), Gaps = 56/496 (11%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++KQI + G K + F S +S ++F +Q F WNTMIRG
Sbjct: 50 KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109
Query: 63 FAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
FAE P A L+ QM S LP+ +TF F+ +A A + +G H+ V+R G++S
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FV N L+H+Y+ + A ++F++ RD ++W S+ING+A +G MP
Sbjct: 170 LRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNG-----------MP 218
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
EAL + M G P+ +V L+AC LGAL G
Sbjct: 219 --------------------NEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGER 258
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+H Y+ + G+ + A++D+Y+KCG A VFD M R V ++TSLI GLA +
Sbjct: 259 VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGL 318
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
A++LF ++ +G+ P+E M E YGI P ++H+G
Sbjct: 319 GNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHG 378
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLL RAG + A +R MP+ P+ + LL AC +HG ++LG+ +
Sbjct: 379 CMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQR 438
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
H G VLLSN+YAS +W V+ VR+ M V+K PG SL+E+ V EF+ G+R++
Sbjct: 439 HSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQ 498
Query: 458 MEEIVLLLFGIDKHLK 473
EE +L I + LK
Sbjct: 499 SEETYAMLAKITQLLK 514
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 253/497 (50%), Gaps = 63/497 (12%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+I S L +G D F ++ D + ++F + + W +I G+
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKCD--NFDDALKVFDDIPDKNVVSWTAIITGYIS 192
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+A +K++L P++++ +L ACA RLG
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACA----------------RLG------- 229
Query: 126 LNGLLHLYATCNCMDPA---RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+C R + D + R+V TSL++ Y K G + A +F MPE
Sbjct: 230 -----------DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPE 278
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ VSWS MI GY L ++AL+ F MQ +P+ +VG L+ACA LGALD G W
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
+ +DRN + +LGTA+IDMY+KCG + A +F +M +D + +++ GL+ + +
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHA 398
Query: 303 ASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGC 338
+ LF ++ G+ P+E+ M ++ + P ++HYGC
Sbjct: 399 KAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC 458
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG+L A +++ MP++P+ V GALL C++H D L ++ ++ L+E +
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWN 518
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G +V LSNIY+ +W EK+R M++ +++K+ CS IE+DG+V EF+ G++++ L
Sbjct: 519 SGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLS 578
Query: 459 EEIVLLLFGIDKHLKSL 475
E+I L + + LK++
Sbjct: 579 EKIYAKLDELGRELKAV 595
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 163/318 (51%), Gaps = 33/318 (10%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+K I + L D + + I+ C A D G ++ +F ++ F+WNTMIRG
Sbjct: 31 QLKHIHARLLRLHLDQDNYLLNLIL--CCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
K+ A LY M FLPNN+T F+L+ACA + +GL H+ +++ G++
Sbjct: 89 LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD-- 146
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
DV TSL++ Y K A ++FD +P+
Sbjct: 147 -----------------------------HDVFVKTSLLSLYVKCDNFDDALKVFDDIPD 177
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
KN VSW+A+I GY+ F+EA+ F + G +P+ +V L ACA LG G WI
Sbjct: 178 KNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWI 237
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
Y+ +G+ ++ + T+++DMY KCG +E A +F +MP +D+ +++++I G A +
Sbjct: 238 DRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLP 297
Query: 303 ASAIELFMRMQLEGVVPN 320
A++LF +MQ E + P+
Sbjct: 298 QQALDLFFQMQSENLKPD 315
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 44/218 (20%)
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G + ++ +F ++ E N W+ MI G V D F +A+ + M+ GF PN+ I L
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
ACA + G IH+ + + G + D+ + T+++ +Y KC + A VFD +P+++V
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
++T++I+G + AI F
Sbjct: 182 SWTAIITGYISSGHFREAIGAF-------------------------------------- 203
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
K + EM ++PD++ L +L AC GD G+
Sbjct: 204 ------KKLLEMGLKPDSFSLVKVLAACARLGDCTSGE 235
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 239/460 (51%), Gaps = 63/460 (13%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
LS+ Y +F + F WNTM RG+AE + P A Y+QM+ S P+ +T+ F+L+A
Sbjct: 80 LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
+ + + G H+ IR G+ES FV N LLH+YA C + A +F++ +RD+++
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAX 199
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
S+ING+A +G+ S EAL F M G
Sbjct: 200 ISVINGFALNGRPS-------------------------------EALTLFREMSAEGVE 228
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+ +V L+A A LGAL+ GR +H Y+ + G+ + + +++D+YAKC I
Sbjct: 229 PDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX--- 285
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------------- 321
R+ ++TSLI GLA + A+ELF M+ +G+VP+E
Sbjct: 286 -----ERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGML 340
Query: 322 --------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
M E +GI P ++HYGC+VDLL RAG+++ A + ++ MP++P+ LL
Sbjct: 341 DEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLG 400
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
AC +HG + LG+ L++ H G +VLLSN+Y S +W V+ +RR M + V+K
Sbjct: 401 ACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKT 460
Query: 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
G SL+E+ V EF G R++ +++ LL I + LK
Sbjct: 461 SGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLK 500
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 40/248 (16%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD + +F ++ R ++I GFA P +A L+++M P+ +T +L
Sbjct: 179 GDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLL 238
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A+ L +G H ++++G V N LL LYA C+ + R+ +
Sbjct: 239 SASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAI--------WEXERNAV 290
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWTSLI G A +NG+ + EALE F M+ G
Sbjct: 291 SWTSLIVGLA--------------------------VNGFGE-----EALELFREMEGQG 319
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ VG L AC+ G LD+G + + GI I ++D+ ++ G ++ A
Sbjct: 320 LVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQA 379
Query: 275 CSVFDSMP 282
+MP
Sbjct: 380 YEYIQNMP 387
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 151/451 (33%), Positives = 239/451 (52%), Gaps = 33/451 (7%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPI-KAFALYKQMLRSDFLPNNYTFSFILRACADT 101
R+F + R WN++I + E+N P+ +A L+ +M+ + F P+ T S ++ ACA
Sbjct: 207 RVFDAMPERNVVSWNSLITCY-EQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGL 265
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLN-GLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
+ G HA +++ D VLN L+ +YA C AR +FD +R V+S TS+
Sbjct: 266 AAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSI 325
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
+ GYAKS + A+ +F +M EKN ++W+ +I Y Q +EA+ F ++ P H
Sbjct: 326 LAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTH 385
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGI------ELDIILGTAIIDMYAKCGCIETA 274
L AC + L G+ H +V + G E D+ +G +++DMY K G I+
Sbjct: 386 YTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDG 445
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------------ 322
VF+ M RD ++ ++I G A + ++ A+ LF RM P+
Sbjct: 446 AKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHS 505
Query: 323 ------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M+E +GI P HY C+VDLLGRAG L+ A++++++MP EPD+ + +
Sbjct: 506 GLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWAS 565
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACR+H +V+LG+ T L E ++ G +VLLSN+YA +W V +VRR M+D V
Sbjct: 566 LLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGV 625
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
K PGCS IE+ + F++ + + EI
Sbjct: 626 SKQPGCSWIEIGSKMNVFLARDNRHPCRNEI 656
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 172/369 (46%), Gaps = 42/369 (11%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G L R+F + R TF +N ++ +A P +A AL++ + D N + +
Sbjct: 65 LGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAAL 124
Query: 95 LR---ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM--------DPAR 143
R A + F+ + HA DFVLN A C +
Sbjct: 125 ARHGRGHAGDALRFLAAM-HAD---------DFVLNAYSFASALSACAAEKDLRTGEQVH 174
Query: 144 KLFDMSVNRDVIS-WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
L S + D + T+L++ YAK + AR++FD MPE+N VSW+++I Y Q
Sbjct: 175 GLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVG 234
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY-VDRNGIELDIILGTAI 261
EAL F M GF P+ + ++ACA L A +GR +HA+ V R+ + D++L A+
Sbjct: 235 EALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNAL 294
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+DMYAKCG A +FDSMP+R V + TS+++G A A +F +M
Sbjct: 295 VDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQM--------- 345
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVH 378
+E V + L+ + G E A ++ ++ I P +Y G +LNAC
Sbjct: 346 -------VEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNI 398
Query: 379 GDVDLGKET 387
+ LG++
Sbjct: 399 AVLQLGQQA 407
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 2/213 (0%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H V++ F+LN L+ YA + AR++FD R+ S+ +L++ YA+ G+
Sbjct: 40 HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFK--EALEHFNYMQLCGFRPNHAGIVGALT 228
AR +F+ +P+ + S++A++ + +AL M F N AL+
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
ACA L G +H V R+ D+ +GTA++DMYAKC A VFD+MP R+V +
Sbjct: 160 ACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVS 219
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+ SLI+ + A+ LF+ M G P+E
Sbjct: 220 WNSLITCYEQNGPVGEALVLFVEMMATGFFPDE 252
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 33/243 (13%)
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+L R H V ++ + + L ++ YA+ G + A VFD +P R+ F+Y +L+S
Sbjct: 32 SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
A + A LF +P +P Y +V L R G A
Sbjct: 92 AYARLGRPDEARALFE------AIP----------DPDQCSYNAVVAALARHGRGHAGDA 135
Query: 355 VVREMPIEPDNYVLGAL-----LNACRVHGDVDLGKETVESLVERSLDHEGVHV--LLSN 407
+ + D++VL A L+AC D+ G E V LV RS + VH+ L +
Sbjct: 136 LRFLAAMHADDFVLNAYSFASALSACAAEKDLRTG-EQVHGLVARSPHADDVHIGTALVD 194
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI---EVDGVVCE----FVSGERTNVLMEE 460
+YA E+ +V M + V V SLI E +G V E FV T +E
Sbjct: 195 MYAKCERPVDARRVFDAMPERNV--VSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDE 252
Query: 461 IVL 463
+ L
Sbjct: 253 VTL 255
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + G ++F + R WN MI G+A+ A L+++ML S+ P++ T +L
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVL 499
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC H+ ++ G + F+ + + P+R
Sbjct: 500 SACG-----------HSGLVDEGRRHFHFMTED--------HGITPSRD----------- 529
Query: 156 SWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMI 192
+T +++ ++G + A ++ MP E ++V W++++
Sbjct: 530 HYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 567
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 216/356 (60%), Gaps = 24/356 (6%)
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
A+KLF +R+++ T++I+GY++ G++ AR +FD+M EK+ V WSAMI+GY + D
Sbjct: 2 AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
+EAL F+ MQ+ G +P+ I+ ++ACA LG LD+ +WIH YVD+NG+ + + A+
Sbjct: 62 QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
IDMYAKCG + A VF+ M +R+V ++TS+I+ A H +++A++ F +M+ E + PN
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181
Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
SM+ + I P +HYGC+VDL GRA +L A ++V
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
MP+ P+ + G+L+ AC++HG+ +LG+ + ++E DH+G V LSNIYA +W
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQD 301
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
V ++R M+ + K GCS IE++ V EFV ++ + ++I L + K LK
Sbjct: 302 VGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELK 357
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 40/323 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S +G + +F ++ + W+ MI G+AE ++P +A L+ +M P+ T
Sbjct: 25 SRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTIL 84
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
++ ACA L H V + G V N L+ +YA C + AR +F+ +R
Sbjct: 85 SVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSR 144
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+VISWTS+IN +A G S A + F +M ++N
Sbjct: 145 NVISWTSMINAFAIHGDASNALKFFYQMKDEN---------------------------- 176
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHA-YVDRNGIELDIILGTAIIDMYAKCGCI 271
+PN VG L AC+ G +++GR A + + I ++D++ + +
Sbjct: 177 ---IKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLL 233
Query: 272 ETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-----SMSE 325
A + ++MP +V + SL++ H + + + F Q+ + P+ +S
Sbjct: 234 RDALELVETMPLAPNVVIWGSLMAACQIHGE--NELGEFAAKQVLELEPDHDGALVQLSN 291
Query: 326 IYGIEPGVQHYGCLVDLLGRAGM 348
IY + Q G L +L+ + G+
Sbjct: 292 IYAKDRRWQDVGELRNLMKQRGI 314
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 233/437 (53%), Gaps = 28/437 (6%)
Query: 48 LQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC--LF 105
L TT W + I + +A + M + PN+ TF +L C D S
Sbjct: 27 LNLSTTISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSES 86
Query: 106 VGLICHAQVIRLGWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGY 164
G + H +LG + ++ V ++ +Y+ + AR +FD ++ ++W ++I+GY
Sbjct: 87 FGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGY 146
Query: 165 AKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224
+ G+I A ++FD+MPE+ +SW+AMING+V+ +EAL F MQ G P++ I+
Sbjct: 147 MRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAII 206
Query: 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L AC LGAL G W+H Y+ ++ + + ID++ +CGC+E A VFD M R
Sbjct: 207 AVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKR 266
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ 320
V ++ S+I + + + ++ F RMQ EG PN
Sbjct: 267 TVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGALTACSHVGLVEEGLRYF 326
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG- 379
++M + Y I P ++HYGCLVDL RAG LE A VV+ MP++P+ V+G+LL ACR HG
Sbjct: 327 QTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRTHGN 386
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+ L + ++ L + ++ +V+LSN+YA+ +W G K+RR M+ ++K PG S I
Sbjct: 387 NTVLAERLMKHLSDTNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 446
Query: 440 EVDGVVCEFVSGERTNV 456
E+D F++G+ +V
Sbjct: 447 EIDDCTHVFMAGDSAHV 463
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 139/326 (42%), Gaps = 45/326 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + Y+LF + R W MI GF +K +A +++M S P+ +L
Sbjct: 150 GKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVL 209
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L GL H ++ + + V N + L+ C C++ A+ +FD R V+
Sbjct: 210 AACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVV 269
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S+I V +SA NG+ E+L +F MQ G
Sbjct: 270 SWNSVI------------------------VVFSA--NGHAD-----ESLVYFRRMQEEG 298
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
F+PN GALTAC+ +G +++G R+ I I ++D+Y++ G +E A
Sbjct: 299 FKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDA 358
Query: 275 CSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
+V SMP + + SL++ H + E M+ + V + S
Sbjct: 359 LNVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDTNVKSHS----------- 407
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359
+Y L ++ G E A K+ R+M
Sbjct: 408 -NYVILSNMYAADGKWEGASKMRRKM 432
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 22/224 (9%)
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL--GAL 236
K+ +SW++ I + EA + F+ M+ G PNH + L+ C G+
Sbjct: 26 KLNLSTTISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSE 85
Query: 237 DQGRWIHAYVDRNGIELD-IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
G +H Y + G++ + +++GTAII MY+K G + A VFD M ++ + ++I G
Sbjct: 86 SFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDG 145
Query: 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ A +LF M G++ + +++ + G E A
Sbjct: 146 YMRKGKIDDAYKLFDEMPERGLIS----------------WTAMINGFVKKGFHEEALVW 189
Query: 356 VREMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
REM +EPD + A+L AC G + G LV R
Sbjct: 190 FREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDF 233
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 253/497 (50%), Gaps = 63/497 (12%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+I S L +G D F ++ D + ++F + + W +I G+
Sbjct: 135 KIHSLLVKAGYDHDVFVKTSLLSLYVKCD--NFDDALKVFDDIPDKNVVSWTAIITGYIS 192
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+A +K++L P++++ +L ACA RLG
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACA----------------RLG------- 229
Query: 126 LNGLLHLYATCNCMDPA---RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+C R + D + R+V TSL++ Y K G + A +F MPE
Sbjct: 230 -----------DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPE 278
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K+ VSWS MI GY L ++AL+ F MQ +P+ +VG L+ACA LGALD G W
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
+ +DRN + +LGTA+IDMY+KCG + A +F +M +D + +++ GL+ + +
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHA 398
Query: 303 ASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQHYGC 338
+ LF ++ G+ P+E+ M ++ + P ++HYGC
Sbjct: 399 KAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC 458
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+VDLLGRAG+L A +++ MP++P+ V GALL C++H D L ++ ++ L+E +
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWN 518
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G +V LSNIY+ +W EK+R M++ +++K+ CS IE+DG+V EF+ G++++ L
Sbjct: 519 SGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLS 578
Query: 459 EEIVLLLFGIDKHLKSL 475
E+I L + + LK++
Sbjct: 579 EKIYAKLDELGRELKAV 595
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 163/318 (51%), Gaps = 33/318 (10%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q+K I + L D + + I+ C A D G ++ +F ++ F+WNTMIRG
Sbjct: 31 QLKHIHARLLRLHLDQDNYLLNLIL--CCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
K+ A LY M FLPNN+T F+L+ACA + +GL H+ +++ G++
Sbjct: 89 LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD-- 146
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
DV TSL++ Y K A ++FD +P+
Sbjct: 147 -----------------------------HDVFVKTSLLSLYVKCDNFDDALKVFDDIPD 177
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
KN VSW+A+I GY+ F+EA+ F + G +P+ +V L ACA LG G WI
Sbjct: 178 KNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWI 237
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
Y+ +G+ ++ + T+++DMY KCG +E A +F +MP +D+ +++++I G A +
Sbjct: 238 DRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLP 297
Query: 303 ASAIELFMRMQLEGVVPN 320
A++LF +MQ E + P+
Sbjct: 298 QQALDLFFQMQSENLKPD 315
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 44/218 (20%)
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G + ++ +F ++ E N W+ MI G V D F +A+ + M+ GF PN+ I L
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
ACA + G IH+ + + G + D+ + T+++ +Y KC + A VFD +P+++V
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347
++T++I+G + AI F
Sbjct: 182 SWTAIITGYISSGHFREAIGAF-------------------------------------- 203
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
K + EM ++PD++ L +L AC GD G+
Sbjct: 204 ------KKLLEMGLKPDSFSLVKVLAACARLGDCTSGE 235
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 165/515 (32%), Positives = 255/515 (49%), Gaps = 62/515 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD--LSHGYRLFVCLQYRTTFIW-N 57
++ + Q+ + +G P V +++ C+ D G L++ ++F + + +W N
Sbjct: 38 LRTLAQLHAAAVKAGLAAHPALVTRLLTLCTGPDAGPAHLAYARQVFDRVPHPADAVWYN 97
Query: 58 TMIRGFAEKNEP-----IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
T++RG+A + P A ++ +ML P+ YTF +L+ACA G HA
Sbjct: 98 TLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHA 157
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++LG +D+V +LIN YA+ G
Sbjct: 158 LAVKLGAADHDYV-------------------------------RPTLINMYAECGDARA 186
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR MF VS++AMI V+ EAL F MQ G +P ++ L+ACA
Sbjct: 187 ARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACAL 246
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGAL+ GRW+H YV + G+ + + TA+IDMYAKCG +E A VF M ++D A++ +
Sbjct: 247 LGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVM 306
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE----------SMSEI-------------YGI 329
I ANH AI LF M+ EG+ P++ S S + +GI
Sbjct: 307 IVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKDHGI 366
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
PG++HYGC+ DLL R+G LE A K + E+PI P + LL+AC HGD +LGK E
Sbjct: 367 VPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFE 426
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
+++ H G +V+ SN+ A+T W + VR+ M + V KVPGCS IE+D V EF
Sbjct: 427 RILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFF 486
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+G+ + +E ++ + LK + + + + V
Sbjct: 487 AGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHV 521
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 161/507 (31%), Positives = 251/507 (49%), Gaps = 63/507 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWD---PFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
+++ KQI +H+ S D A+ K+ C G +F CL YR WN
Sbjct: 246 LEKGKQIHAHIVESEYHSDVRVSTALTKMYMKC-----GAFKDAREVFECLSYRDVIAWN 300
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
TMIRGF + + +A + +ML P+ T++ +L ACA L G HA+ +
Sbjct: 301 TMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD 360
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G S DV +LIN Y+K+G + ARQ+F
Sbjct: 361 GLVS-------------------------------DVRFGNALINMYSKAGSMKDARQVF 389
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MP+++ VSW+ ++ Y D E+ F M G + N + L AC+ AL
Sbjct: 390 DRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALK 449
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G+ IHA V + G+ D+ + A++ MY KCG +E A VF+ M RDV + +LI GL
Sbjct: 450 WGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLG 509
Query: 298 NHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGV 333
+ + A++ + M+ EG+ PN + MS+ YGI P
Sbjct: 510 QNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTE 569
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HY C+VD+L RAG L A+ V+ +P++P + GALL ACR+H +V++G+ E ++
Sbjct: 570 KHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLK 629
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ G++V LS IYA+ W V K+R+ M++ V+K PG S IE+ G V FV+ ++
Sbjct: 630 LEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQ 689
Query: 454 TNVLMEEIVLLLFGIDKHLKSLCFFDD 480
++ +EI L + K +KSL + D
Sbjct: 690 SHPRTQEIYAELETLKKQMKSLGYVPD 716
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 171/379 (45%), Gaps = 56/379 (14%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ H+ G + + ++ + G ++ +LF ++ WN MI G+A
Sbjct: 48 KQVHEHILRCGVKPNVYITNTLLKL--YAHCGSVNEARQLFDKFSNKSVVSWNVMISGYA 105
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +AF L+ M + P+ +TF IL AC+ + L G H +V+ G +
Sbjct: 106 HRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTT 165
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N L+ +YA C + AR++FD +RD +SWT+L YA+SG
Sbjct: 166 VGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG---------------- 209
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+E+L+ ++ M RP+ + L+AC L AL++G+ IHA
Sbjct: 210 ---------------YGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHA 254
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
++ + D+ + TA+ MY KCG + A VF+ + RDV A+ ++I G + Q
Sbjct: 255 HIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEE 314
Query: 305 AIELFMRMQLEGVVPNESM-----------------SEIY------GIEPGVQHYGCLVD 341
A F RM EGV P+ + EI+ G+ V+ L++
Sbjct: 315 AHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALIN 374
Query: 342 LLGRAGMLEAAKKVVREMP 360
+ +AG ++ A++V MP
Sbjct: 375 MYSKAGSMKDARQVFDRMP 393
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 31/235 (13%)
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
++Y + +L++C L VG H ++R G + ++ N LL LYA C ++ AR+LF
Sbjct: 27 DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
D N+ V+SW +I+GYA G L +EA
Sbjct: 87 DKFSNKSVVSWNVMISGYAHRG-------------------------------LAQEAFN 115
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F MQ P+ V L+AC+ L+ GR IH V G+ D +G A+I MYA
Sbjct: 116 LFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYA 175
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
KCG + A VFD+M +RD ++T+L A +++ + M E V P+
Sbjct: 176 KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSR 230
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%)
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
Y+ G + + V L +C L G+ +H ++ R G++ ++ + ++ +YA
Sbjct: 16 LQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAH 75
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
CG + A +FD N+ V ++ +ISG A+ + A LF MQ E + P++
Sbjct: 76 CGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDK 129
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 231/440 (52%), Gaps = 32/440 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R WN MI G+ + A L++++ + D + N +
Sbjct: 212 GCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYA 271
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+ C D + + W N ++ Y + A KLF + R+VI
Sbjct: 272 Q-CGDVENAVELFEKMPEQNLVSW-------NTMIAGYVQNGSVKEAFKLFQIMPERNVI 323
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW ++I+G+A++GQ+ A ++F MPE N VSW+AMI GY Q + AL+ F MQ+
Sbjct: 324 SWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVD 383
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+PN L ACA L L+QG H V R+G + D+++G ++ MYAKCG IE A
Sbjct: 384 MKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDAR 443
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
VFD M +D + +++I G A + S ++ELF +MQ G+ P+
Sbjct: 444 KVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAG 503
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+ M+ Y I P ++HYGC++DLLGRAG + A ++ +MPI+PD + G+L
Sbjct: 504 LVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSL 563
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L+ACR H ++DLG++ + L+ + + +VLLSNIYA+ +W+ + VR M+D +V+
Sbjct: 564 LSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVK 623
Query: 432 KVPGCSLIEVDGVVCEFVSG 451
K GCS I + V F+ G
Sbjct: 624 KKLGCSWIVIKKQVHAFLVG 643
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 182/378 (48%), Gaps = 38/378 (10%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G L R+F + + W MI +A +A + +M PN++TF+ I
Sbjct: 113 LGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASI 172
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L AC D L H ++++ G+ES FV NGL+ +YA C++ AR+LFD RDV
Sbjct: 173 LPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDV 229
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SW ++I GY ++G I A ++F ++P+++ ++W+ M+ GY Q + A+E F M
Sbjct: 230 VSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQ 289
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+ I G + + A + +RN +I A+I +A+ G +E A
Sbjct: 290 NLVSWNTMIAGYVQNGSVKEAF---KLFQIMPERN-----VISWNAVISGFAQNGQVEEA 341
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY------- 327
+F +MP +V ++ ++I+G + + Q+ +A++LF +MQ+ + PN I
Sbjct: 342 LKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAAL 401
Query: 328 ----------------GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
G + V LV + + G +E A+KV M + D+ L A+
Sbjct: 402 AVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMR-QQDSASLSAM 460
Query: 372 LNACRVHGDVDLGKETVE 389
+ ++G KE++E
Sbjct: 461 IVGYAING---CSKESLE 475
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 33/270 (12%)
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+++ ++ +A + + M+ + P++ T+ +L+ C + L + HA +I+
Sbjct: 35 LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+E D L L++ Y K G + AR++FD
Sbjct: 95 FECQDISLG------------------------------NKLVSIYVKLGSLVEARRVFD 124
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP KN VSW+AMI Y + + +EAL F MQ G +PNH L AC L L +
Sbjct: 125 EMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE 184
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
H + + G E ++ +G ++DMYAK GCIE A +FD MP RDV ++ ++I+G
Sbjct: 185 ---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQ 241
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYG 328
+ A++LF + V+ +M Y
Sbjct: 242 NGLIEDALKLFQEIPKRDVITWNTMMAGYA 271
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 252/469 (53%), Gaps = 42/469 (8%)
Query: 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN 87
G+ + +GD +LF + R WNTMI G+A+ + +A L+++ D
Sbjct: 197 GYVKRNMLGD---ARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV--- 250
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
+T++ ++ A L ++ + SY+ ++ G YA MD R+LF+
Sbjct: 251 -FTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAG----YAQYKRMDMGRELFE 305
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
++ SW +I+GY ++G ++ AR +FD MP++++VSW+A+I GY Q L++EA+
Sbjct: 306 EMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNM 365
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
M+ G N + AL+ACA + AL+ G+ +H V R G E ++G A++ MY K
Sbjct: 366 LVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCK 425
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------ 321
CGCI+ A VF + ++D+ ++ ++++G A H A+ +F M GV P+E
Sbjct: 426 CGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGV 485
Query: 322 ------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
SM++ YGI P +HY C++DLLGRAG LE A+ ++R MP EP
Sbjct: 486 LSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEP 545
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
D GALL A R+HG+++LG++ E + + + G++VLLSN+YA++ +W V K+R
Sbjct: 546 DAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRL 605
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGE-------RTNVLMEEIVLLL 465
M V+K PG S +EV + F G+ R +EE+ L +
Sbjct: 606 KMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKM 654
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 39/328 (11%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA------ 97
LF + ++ F WN M+ G+A A L+ M D + N S +R+
Sbjct: 86 LFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEA 145
Query: 98 -------CADTSCLFVGLICH-------AQVIRLGWESYDFVL---NGLLHLYATCNCMD 140
S + GL+ + RL D+ L N L+ Y N +
Sbjct: 146 RDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLG 205
Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
AR+LFD RD+ISW ++I+GYA+ G +S AR++F++ P ++ +W+AM+ YVQ +
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGM 265
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA 260
EA F+ M + I G A +D GR + + I I+
Sbjct: 266 LDEARRVFDEMPQKREMSYNVMIAGY----AQYKRMDMGRELFEEMPFPNIGSWNIM--- 318
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
I Y + G + A ++FD MP RD ++ ++I+G A + A+ + + M+ +G N
Sbjct: 319 -ISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLN 377
Query: 321 ESM--------SEIYGIEPGVQHYGCLV 340
S ++I +E G Q +G +V
Sbjct: 378 RSTFCCALSACADIAALELGKQVHGQVV 405
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 25/250 (10%)
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
AR LFD ++D+ SW ++ GYA++ ++ AR +FD MPEK+ VSW+AM++GYV+
Sbjct: 83 ARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHV 142
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
EA + F+ M N G L A G L++ R + + + ++I +
Sbjct: 143 DEARDVFDRMP----HKNSISWNGLLAAYVRSGRLEEARRLF----ESKSDWELISCNCL 194
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+ Y K + A +FD +P RD+ ++ ++ISG A + A LF + V
Sbjct: 195 MGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWT 254
Query: 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV 381
+M Y VQ GML+ A++V EMP + ++ + +
Sbjct: 255 AMVYAY-----VQD-----------GMLDEARRVFDEMP-QKREMSYNVMIAGYAQYKRM 297
Query: 382 DLGKETVESL 391
D+G+E E +
Sbjct: 298 DMGRELFEEM 307
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
+ T I+ + ++G +A +FD MP +N+VS++AMI+GY++ F A + F+ M
Sbjct: 33 TVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP- 91
Query: 214 CGFRPNHAGIVG---ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
H + LT A L R + + E D++ A++ Y + G
Sbjct: 92 ------HKDLFSWNLMLTGYARNRRLRDARMLFDSMP----EKDVVSWNAMLSGYVRSGH 141
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
++ A VFD MP+++ ++ L++ + A LF
Sbjct: 142 VDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF 180
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 249/473 (52%), Gaps = 35/473 (7%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPI-KAFALYKQMLRSDFLPNNYTFSFILRACADT 101
R+F + R WN++I + E+N P+ +A L+ +M+ + F P+ T S ++ ACA
Sbjct: 207 RVFDAMPERNVVSWNSLITCY-EQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGL 265
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLN-GLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
+ G HA +++ D VLN L+ +YA C AR +FD +R ++S TS+
Sbjct: 266 AADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSI 325
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
+ GYAKS + A+ +F +M EKN ++W+ +I Y Q +EA+ F ++ P H
Sbjct: 326 LTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTH 385
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGI------ELDIILGTAIIDMYAKCGCIETA 274
L AC + L G+ H +V + G E D+ +G +++DMY K G I+
Sbjct: 386 YTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDG 445
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
VF+ M RD ++ ++I G A + ++ A+ LF RM P+
Sbjct: 446 AKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHS 505
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM+E +GI P HY C+VDLLGRAG L+ A++++ +MP+EPD+ + +
Sbjct: 506 GLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWAS 565
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACR+H +V+LG+ T L E + G +VLLSN+YA +W V +VRR M+D V
Sbjct: 566 LLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGV 625
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEI--VLLLFGIDKHLKSLCFFDDG 481
K PGCS IE+ + F++ ++ + EI L + ++ S+ DDG
Sbjct: 626 SKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQMEMGRTSIDEIDDG 678
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 36/366 (9%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G L R+F + R TF +N ++ +A P +A AL++ + P+ +++ +
Sbjct: 65 LGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPD----PDQCSYNAV 120
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--- 151
+ A A G A + DFVLN A C V+
Sbjct: 121 VAALARHG---RGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLV 177
Query: 152 ------RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
DV ++L++ YAK + AR++FD MPE+N VSW+++I Y Q EAL
Sbjct: 178 ARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEAL 237
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR-NGIELDIILGTAIIDM 264
F M GF P+ + ++ACA L A +GR +HA++ + + + D++L A++DM
Sbjct: 238 MLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDM 297
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324
YAKCG A +FDSMP+R + + TS+++G A A +F +M
Sbjct: 298 YAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQM------------ 345
Query: 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDV 381
+E V + L+ + G E A ++ ++ I P +Y G +LNAC D+
Sbjct: 346 ----VEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADL 401
Query: 382 DLGKET 387
LG++
Sbjct: 402 QLGQQA 407
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 2/214 (0%)
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA++++ F+LN L+ YA + AR++FD R+ S+ +L++ YA+ G+
Sbjct: 39 AHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGR 98
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQ--VDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
AR +F+ +P+ + S++A++ + +AL M F N AL
Sbjct: 99 PDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASAL 158
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
+ACA G +H V R+ D+ + +A++DMYAKC E A VFD+MP R+V
Sbjct: 159 SACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVV 218
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
++ SLI+ + A+ LF+ M G P+E
Sbjct: 219 SWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDE 252
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 24/202 (11%)
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L R HA + ++ + + L ++ YA+ G + A VFD +P R+ F+Y +L+S
Sbjct: 33 LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92
Query: 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
A + A LF +P +P Y +V L R G AA +
Sbjct: 93 YARLGRPDEARALF------EAIP----------DPDQCSYNAVVAALARHGRGHAADAL 136
Query: 356 VREMPIEPDNYVLGAL-----LNACRVHGDVDLGKETVESLVERSLDHEGVHV--LLSNI 408
+ D++VL A L+AC D G E V LV RS + VH+ L ++
Sbjct: 137 RFLAAMHADDFVLNAYSFASALSACAAEKDSRTG-EQVHGLVARSPHADDVHIRSALVDM 195
Query: 409 YASTEQWNGVEKVRRGMEDNEV 430
YA E+ +V M + V
Sbjct: 196 YAKCERPEDARRVFDAMPERNV 217
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + G ++F + R WN MI G+A+ A L+++ML S+ P++ T +L
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVL 499
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC H+ ++ G + H + + P+R
Sbjct: 500 SACG-----------HSGLVDEGRRYF--------HSMTEDHGITPSRD----------- 529
Query: 156 SWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMI 192
+T +++ ++G + A ++ + MP E ++V W++++
Sbjct: 530 HYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLL 567
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 238/479 (49%), Gaps = 61/479 (12%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89
C ++ I L +F ++ +T WNTMI G A+ E +AFA + +ML +P
Sbjct: 294 CGSARIARL-----VFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRV 348
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T +L ACA+ L G H + +L +S V+N
Sbjct: 349 TMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMN---------------------- 386
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
SLI+ Y+K ++ IA +F+ + EK V+W+AMI GY Q KEAL F
Sbjct: 387 ---------SLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFC 436
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
MQ G + + +VG +TA A Q +WIH R ++ ++ + TA++DMYAKCG
Sbjct: 437 MMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCG 496
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------- 321
I+TA +FD M R V + ++I G H ++LF MQ V PN+
Sbjct: 497 AIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVIS 556
Query: 322 ----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
SM E Y +EP + HY +VDLLGRAG L+ A ++EMPI+P
Sbjct: 557 ACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGI 616
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
VLGA+L AC++H +V+LG++ + L + D G HVLL+NIYAS W+ V KVR M
Sbjct: 617 SVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAM 676
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
ED + K PGCS +E+ + F SG + ++I L + +K+ + D + +
Sbjct: 677 EDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI 735
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 167/375 (44%), Gaps = 59/375 (15%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97
+ + Y++F +Q++ W T++ G+A+ +A L QM + P++ T IL A
Sbjct: 196 IDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPA 255
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
AD L +G H R G+ES V N LL +Y C
Sbjct: 256 VADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKC--------------------- 294
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
G IAR +F M K VSW+ MI+G Q +EA F M G
Sbjct: 295 ----------GSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV 344
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P ++G L ACA LG L++G ++H +D+ ++ ++ + ++I MY+KC ++ A S+
Sbjct: 345 PTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASI 404
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-----------------VPN 320
F+++ +V + ++I G A + A+ LF MQ +G+ N
Sbjct: 405 FNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVN 463
Query: 321 ESMSEIYGI------EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
I+G+ + V LVD+ + G ++ A+K+ +M E A+++
Sbjct: 464 RQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLF-DMMQERHVITWNAMIDG 522
Query: 375 CRVHGDVDLGKETVE 389
HG +GKET++
Sbjct: 523 YGTHG---VGKETLD 534
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 148/321 (46%), Gaps = 35/321 (10%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
K++ QI + +G + K+I FC G S R+F ++ + +++ M+
Sbjct: 61 KELYQILPFIIKNGFYNEHLFQTKVISLFCK---FGSNSEAARVFEHVELKLDVLYHIML 117
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+G+A+ + A + +M+ + ++ +L+ C + L G H +I G+E
Sbjct: 118 KGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFE 177
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV+ ++ LYA C QI A +MF++M
Sbjct: 178 SNLFVMTAVMSLYAKCR-------------------------------QIDNAYKMFERM 206
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
K+ VSW+ ++ GY Q K AL+ MQ G +P+ +V L A A + AL GR
Sbjct: 207 QHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGR 266
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH Y R+G E + + A++DMY KCG A VF M ++ V ++ ++I G A +
Sbjct: 267 SIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNG 326
Query: 301 QSASAIELFMRMQLEGVVPNE 321
+S A F++M EG VP
Sbjct: 327 ESEEAFATFLKMLDEGEVPTR 347
>gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
Length = 470
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 255/473 (53%), Gaps = 56/473 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+KQI S + +G L F +++ +H +++ T + N +IR
Sbjct: 20 KQMKQIHSLVITNGYL----------NFQKSNNASFSNH-------IKWMPTLLCNALIR 62
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ N K F ++ ML ++ PN +TF +L+ +S FV H Q ++ G S
Sbjct: 63 AYNVHNHN-KVFVIFTNMLANNVSPNTHTFPPLLK----SSSAFVVTPLHCQALKRGILS 117
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
FVL LL +YA N + A+K+F+ +++ ++IN + +G + A +F+ MP
Sbjct: 118 DPFVLTTLLVVYARTNHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLVFEWMP 177
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQL------CGFRPNHAGIVGALTACAFL-- 233
++ VSW+ M+NG+ F A+ F M C +PN A V L++C L
Sbjct: 178 YRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDVLDCLVKPNEATYVSVLSSCTELEG 237
Query: 234 -GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
GALD GR +H Y+ G++L + +GT++I++Y K GC+ + SVF M R+V + ++
Sbjct: 238 KGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGCLNYSASVFRVMVVREVCTWNAM 297
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYG 328
IS LA++ + A++LF +M+L+G+ PN ESMS +
Sbjct: 298 ISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSKFQ 357
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
+ P ++HYGC+VDLLGRAG ++ A +++R MP PD VLGA L ACR+HG ++LG+E +
Sbjct: 358 VVPVMEHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKTVLGAFLGACRIHGAIELGEE-I 416
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
+++ H G ++LLS++YA E+WN +R + + + K+P S++ +
Sbjct: 417 AKMLKLQTQHCGQYLLLSSMYAEKERWNHAADLRNEIMEAGIHKIPAFSMVHL 469
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 244/453 (53%), Gaps = 28/453 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN MI G+ + +AF L ++M + YT++ ++ A ++ +G HA V+
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301
Query: 116 R-LGWESYDFVL---NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171
R + S FVL N L+ LY C + AR++FD +D++SW ++++G + +I
Sbjct: 302 RTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIE 361
Query: 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
A +F +MP ++ ++W+ MI+G Q +E L+ FN M+L G P GA+ +C+
Sbjct: 362 EANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCS 421
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LG+LD G+ +H+ + + G + + +G A+I MY++CG +E A +VF +MP D ++ +
Sbjct: 422 VLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNA 481
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
+I+ LA H AI+L+ +M E ++P+ ++M Y
Sbjct: 482 MIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCY 541
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GI P HY L+DLL RAGM AK V MP EP + ALL C +HG+++LG +
Sbjct: 542 GITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQA 601
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+ L+E +G ++ LSN+YA+ QW+ V +VR+ M + V+K PGCS IEV+ +V
Sbjct: 602 ADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHV 661
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
F+ + + + + L + ++ L + D
Sbjct: 662 FLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPD 694
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 191/403 (47%), Gaps = 45/403 (11%)
Query: 20 PFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
P V + S G++ ++LF + R T +N MI F+ ++ A L+
Sbjct: 60 PDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFV 119
Query: 78 QMLRSDFLPNNYTFSFILRACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132
QM R F+P+ +TFS +L A + +T C + H +V + G S VLN L+
Sbjct: 120 QMKRLGFVPDPFTFSSVLGALSLIADEETHCQQL----HCEVFKWGALSVPSVLNALMSC 175
Query: 133 YATC-------NC--MDPARKLFDMSV--NRDVISWTSLINGYAKSGQISIARQMFDKMP 181
Y +C +C M ARKLFD + RD +WT++I GY ++ + AR++ + M
Sbjct: 176 YVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMT 235
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+ AV+W+AMI+GYV ++EA + M G + + ++A + G + GR
Sbjct: 236 DHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQ 295
Query: 242 IHAYVDRNGIELD----IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+HAYV R ++ + + A+I +Y +CG + A VFD MP +D+ ++ +++SG
Sbjct: 296 VHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCV 355
Query: 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
N + A +F M + ++ + ++ L + G E K+
Sbjct: 356 NARRIEEANSIFREMPVRSLLT----------------WTVMISGLAQNGFGEEGLKLFN 399
Query: 358 EMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+M +EP +Y + +C V G +D G++ +++ D
Sbjct: 400 QMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHD 442
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 148/315 (46%), Gaps = 38/315 (12%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
HA ++ G++ + ++N L+ Y + AR LFD D+++ T++++ Y+ +G I
Sbjct: 19 HAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNI 78
Query: 171 SIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN---HAGIVG 225
+A Q+F+ P ++ VS++AMI + AL+ F M+ GF P+ + ++G
Sbjct: 79 KLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLG 138
Query: 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG-------CIETACS-- 276
AL+ A + +H V + G + A++ Y C C+ A +
Sbjct: 139 ALSLIA--DEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARK 196
Query: 277 VFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
+FD P RD A+T++I+G +D +A EL LEG+ + +++
Sbjct: 197 LFDEAPPGRRDEPAWTTIIAGYVRNDDLVAAREL-----LEGMTDHIAVA---------- 241
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETVESL 391
+ ++ G E A ++R M I+ D Y ++++A G ++G++ V +
Sbjct: 242 -WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQ-VHAY 299
Query: 392 VERSLDHEGVHVLLS 406
V R++ H +LS
Sbjct: 300 VLRTVVQPSGHFVLS 314
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 5/180 (2%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F + R+ W MI G A+ + L+ QM P +Y ++ + +C+
Sbjct: 366 IFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGS 425
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L G H+Q+I+LG +S V N L+ +Y+ C ++ A +F D +SW ++I
Sbjct: 426 LDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAA 485
Query: 164 YAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLC-GFRP 218
A+ G A Q+++KM ++ + +++ +++ L KE +F+ M++C G P
Sbjct: 486 LAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITP 545
>gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/428 (34%), Positives = 233/428 (54%), Gaps = 34/428 (7%)
Query: 49 QYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
++++T +NT+ R + + L+ ML PN++TF +++A A S +G
Sbjct: 47 KWKSTLFYNTLTRAYLNFGQTYNTVYLFTLMLAHQTPPNSHTFPSLIKA-ATLSFPSIGT 105
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H QVI+ G FV LL Y+ C+ A K+FD ++ ++ + ++++ YAK+
Sbjct: 106 SLHTQVIKRGVLCDPFVQTSLLAFYSQIGCLYNAHKVFDGILHPWIVEYNAMLDAYAKNN 165
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM------QLCGFRPNHAG 222
+ A +F +M +++ VSW+ +I+G+ + LF+EA+ F M L +PN A
Sbjct: 166 DMGSAILLFKRMLKRDVVSWTTVISGFSRSGLFREAINFFRVMIAHEDVSLGLVKPNEAT 225
Query: 223 IVGALTACAFL---GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
V L++CA L G+L G+ +H + RN + L + +GTA+ID Y K GC+ +A VF+
Sbjct: 226 YVSVLSSCASLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDFYGKVGCLNSAIRVFN 285
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------ 321
SM + + ++ ++IS LAN+ + A+++F M+ +G PNE
Sbjct: 286 SMTIKQICSWNAMISCLANNGREKQALDMFEMMEEKGPSPNEVTFVVVLTACTRAKLVQF 345
Query: 322 ------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
SM Y ++P ++HYGC+VDLLGRAG+L A +++R MP EPD VLGALL AC
Sbjct: 346 GMRLFQSMWSDYSVKPIMEHYGCVVDLLGRAGLLREASEIIRSMPFEPDASVLGALLGAC 405
Query: 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
++HG L E L+ H G VLLSNI A E+W+ VR+ M + + KVP
Sbjct: 406 KIHGANKLANEVGGRLLRLQPLHCGQFVLLSNINAGLEKWSVAADVRKAMVEAGISKVPA 465
Query: 436 CSLIEVDG 443
SLI G
Sbjct: 466 YSLINYMG 473
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 99/425 (23%), Positives = 174/425 (40%), Gaps = 53/425 (12%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
+ + + G L DPF ++ F S IG L + +++F + + +N M+ +A+
Sbjct: 107 LHTQVIKRGVLCDPFVQTSLLAF--YSQIGCLYNAHKVFDGILHPWIVEYNAMLDAYAKN 164
Query: 67 NEPIKAFALYKQMLRSDFLP-----NNYTFSFILRACADTSCLFVGLICHAQV----IRL 117
N+ A L+K+ML+ D + + ++ S + R + F +I H V ++
Sbjct: 165 NDMGSAILLFKRMLKRDVVSWTTVISGFSRSGLFREAIN---FFRVMIAHEDVSLGLVKP 221
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLF-----DMSVNRD-----VISWTSLINGYAKS 167
+Y VL ++C +D LF S+ R+ V T+LI+ Y K
Sbjct: 222 NEATYVSVL-------SSCASLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDFYGKV 274
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G ++ A ++F+ M K SW+AMI+ K+AL+ F M+ G PN V L
Sbjct: 275 GCLNSAIRVFNSMTIKQICSWNAMISCLANNGREKQALDMFEMMEEKGPSPNEVTFVVVL 334
Query: 228 TACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRD 285
TAC + G R + ++ + ++D+ + G + A + SMP D
Sbjct: 335 TACTRAKLVQFGMRLFQSMWSDYSVKPIMEHYGCVVDLLGRAGLLREASEIIRSMPFEPD 394
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR 345
+L+ H + A E+ R+ + + I G++ + D+ R
Sbjct: 395 ASVLGALLGACKIHGANKLANEVGGRLLRLQPLHCGQFVLLSNINAGLEKWSVAADV--R 452
Query: 346 AGMLEA------AKKVVREMPIEPD-------NYVLGALLNACRVHGDVDLGKETVESLV 392
M+EA A ++ M P +VL ++ A RV G E V +
Sbjct: 453 KAMVEAGISKVPAYSLINYMGKTPSLIFWIVATFVLSSIPVAKRVEGT-----EPVPAFA 507
Query: 393 ERSLD 397
R D
Sbjct: 508 LRKAD 512
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 241/473 (50%), Gaps = 55/473 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F +Q R + WN MI+G+AE + +A AL+K+M+ + + L
Sbjct: 376 GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAAL 435
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L G H ++R+G ES V+N L+ +Y C D
Sbjct: 436 HACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTD--------------- 480
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+A Q+FD++ K VSW+AMI G Q ++A+ F+ MQL
Sbjct: 481 ----------------LAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLEN 524
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ +V + A A + Q RWIH Y R ++ D+ + TA+IDMYAKCG + A
Sbjct: 525 VKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIAR 584
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
S+F+S +R V + ++I G +H A+ELF M+ G VPNE
Sbjct: 585 SLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAG 644
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM E YG+EPG++HYG +VDLLGRAG L A +++MP+EP V GA+
Sbjct: 645 LVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAM 704
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L AC++H +V+L +E+ + + E + HVLL+NIYA+ W V +VR ME ++
Sbjct: 705 LGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQ 764
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
K PG S++++ + F SG + ++I L + + +K++ + D + +
Sbjct: 765 KTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI 817
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 129/279 (46%), Gaps = 32/279 (11%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADT 101
R+F + R WN ++ G+A A + +M D P+ T +L ACAD
Sbjct: 281 RVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADA 340
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
L HA +R G FD VN T+++
Sbjct: 341 QALGACREVHAFAVRGG---------------------------FDEQVNVS----TAIL 369
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
+ Y K G + AR++FD M ++N+VSW+AMI GY + EAL F M G
Sbjct: 370 DVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDV 429
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
++ AL AC LG LD+GR +H + R G+E ++ + A+I MY KC + A VFD +
Sbjct: 430 SVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDEL 489
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+ ++ ++I G + S A+ LF RMQLE V P+
Sbjct: 490 GYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPD 528
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 122/259 (47%), Gaps = 31/259 (11%)
Query: 60 IRGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
+R A +++ A A + M S P TF+ +L+ CA + L G HAQ+ G
Sbjct: 196 LRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARG 255
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
L ++YA C AR++FD RD ++W +L+ GYA++G A M
Sbjct: 256 LSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+M E++ G RP+ +V L ACA AL
Sbjct: 316 RMQEED------------------------------GERPDAVTLVSVLPACADAQALGA 345
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
R +HA+ R G + + + TAI+D+Y KCG +++A VFD M +R+ ++ ++I G A
Sbjct: 346 CREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAE 405
Query: 299 HDQSASAIELFMRMQLEGV 317
+ + A+ LF RM EGV
Sbjct: 406 NGDATEALALFKRMVGEGV 424
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 260/501 (51%), Gaps = 60/501 (11%)
Query: 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML 80
+ + + I CS+ + DL+ + +Q F++N +I+GF + PI++ Y +ML
Sbjct: 813 YLMNQFITACSSFNRLDLAVSF--MTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRML 870
Query: 81 RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140
R P++YT+S +++A A S G A + + G+ + + L+ Y+ +
Sbjct: 871 RDSVSPSSYTYSSLVQASAFASGF--GESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIR 928
Query: 141 PARKLFDMSVNRDVISWTS-------------------------------LINGYAKSGQ 169
ARK+FD RD ++WT+ LI+GY + G
Sbjct: 929 EARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGN 988
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ +A +F++MP K+ +SW+ MINGY + ++EA+ F M G P+ + ++A
Sbjct: 989 LELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISA 1048
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LG L+ G+ +H Y +NG LD+ +G+A++DMY+KCG +E A VF ++P +++F +
Sbjct: 1049 CAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCW 1108
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
S+I GLA H + A+++F +M++E V PN SM +
Sbjct: 1109 NSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMID 1168
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y I V+HYGC+V L +AG++ A +++ M EP+ + GALL+ CR+H ++++ +
Sbjct: 1169 DYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAE 1228
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV-PGCSLIEVDGV 444
L+ + G + LL ++YA +W V ++R M + + K+ PG S I +D
Sbjct: 1229 IAFNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKR 1288
Query: 445 VCEFVSGERTNVLMEEIVLLL 465
F + ++++ +E+ LLL
Sbjct: 1289 DHLFAAADKSHSASDEVCLLL 1309
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/499 (32%), Positives = 241/499 (48%), Gaps = 64/499 (12%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++ I +H+ G D F +I S L LF+ ++ R WN+MI G
Sbjct: 139 VRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGL 198
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
E A L+ +M D + S++
Sbjct: 199 VRCGELEGACKLFDEMPERDMV-----------------------------------SWN 223
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+L+G YA MD A +LF+ R+++SW++++ GY+K G + +AR +FD+ P K
Sbjct: 224 TMLDG----YAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAK 279
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
N V W+ +I GY + +EA E + M+ G RP+ ++ L ACA G L G+ IH
Sbjct: 280 NVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIH 339
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLANHDQS 302
A + R + A IDMYAKCGC++ A VF M +DV ++ S+I G A H
Sbjct: 340 ASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHG 399
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
A+ELF RM EG P+ SM ++YGI P V+HYGC
Sbjct: 400 EKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGC 459
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
++DLLGR G L+ A ++R MP+EP+ +LG LLNACR+H DVD + E L +
Sbjct: 460 MMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTD 519
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G + LLSNIYA W V VR M + +K G S IEV+ V EF ++++
Sbjct: 520 PGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKS 579
Query: 459 EEIVLLLFGIDKHLKSLCF 477
++I ++ + + L+ + +
Sbjct: 580 DDIYKMIDRLVQDLRQVGY 598
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 181/423 (42%), Gaps = 67/423 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ + QI + + + D F K+I + S L+ +F + + ++N++I
Sbjct: 34 LDSVNQIHAQVLKANLHQDLFVAPKLIA--AFSLCRHLASAVNVFNHVPHPNVHLYNSII 91
Query: 61 RGFAEK-NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
R A + P F + QM ++ P+N+T+ F+L+AC S L + + HA V + G+
Sbjct: 92 RAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGF 151
Query: 120 ESYDFVLNGLLHLYATCNC--MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
FV N L+ Y+ C +D A LF RDV++W S+I G + G++ A ++F
Sbjct: 152 YGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLF 211
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MPE++ VSW+ M++GY + A E F M
Sbjct: 212 DEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMP------------------------- 246
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+ +I+ + ++ Y+K G ++ A +FD P ++V +T++I+G A
Sbjct: 247 --------------QRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292
Query: 298 NHDQSASAIELFMRMQLEGVVPNESM----------SEIYGIEP-------------GVQ 334
A EL+ +M+ G+ P++ S + G+ G +
Sbjct: 293 EKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTK 352
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
+D+ + G L+AA V M + D +++ +HG + E +V
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPE 412
Query: 395 SLD 397
+
Sbjct: 413 GFE 415
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 244/470 (51%), Gaps = 58/470 (12%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIK--AFALY 76
+P K++ FC+ S G L++ +F + T WN+MIRGF++ P++ A Y
Sbjct: 429 NPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFY 488
Query: 77 KQMLR-SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT 135
ML S P+ YTFSF+L+AC + H +IR G+
Sbjct: 489 NHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGY---------------- 532
Query: 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGY 195
++DV+ T+LI YA +G I A ++F++MP ++ VSW++MI+ Y
Sbjct: 533 ---------------DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCY 577
Query: 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
Q L +EAL+ ++ M++ + +V L++CA +GAL G +H + + +I
Sbjct: 578 CQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENI 637
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+G A+IDMYAKCG + +A S+F+SMP RDVF + S+I G H + AI F M +
Sbjct: 638 FVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMA 697
Query: 316 GVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
GV PN MS + ++PG++HYGC+VDL GRAG L+
Sbjct: 698 GVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKE 757
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411
A +V+R P + D + LL +C++H +V++G+ + +LV+ G VLLS IYA
Sbjct: 758 ALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAE 817
Query: 412 TEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+ GV ++R+ ++ ++ PG S IEV V FV ++++ EI
Sbjct: 818 AKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREI 867
>gi|357158917|ref|XP_003578281.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 547
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/418 (36%), Positives = 232/418 (55%), Gaps = 9/418 (2%)
Query: 69 PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG 128
P A L+ +LRS P+ ++ L CA V H + G S+ V NG
Sbjct: 52 PHLALRLFDHLLRSGADPDPIAYALALARCARERAYPVAAQLHGHAAKRGASSHRRVSNG 111
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
L+H YA C + ARK+FD D+I+W L+ GYA+ R F +MP +++VSW
Sbjct: 112 LIHAYAVCGMLFDARKVFDYVPEVDMIAWNCLLRGYAQVWDARTLRDFFSRMPARDSVSW 171
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247
+ +I + ++EA+ F M C +P+ +V ++A A+LGAL QG W HAYV
Sbjct: 172 NTVIACCIVNGEYEEAIAVFQEMLACQECQPDRVTLVSIISAIAYLGALAQGFWAHAYVC 231
Query: 248 RNGIELDIILGTAIIDMYAKCGCIETACSVFD-SMPNRDVFAYTSLISGLANHDQSASAI 306
R GIE++ L +A+I+MY+KCG IE A VF+ S R V + ++I+G + S A+
Sbjct: 232 RKGIEVEEKLSSALINMYSKCGFIEGAVYVFENSCAMRSVDTWNAMITGFTANGCSERAL 291
Query: 307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
ELF RM+ G VPN+ + H G + + G+ E A+ +++ MP+EPD
Sbjct: 292 ELFTRMESTGFVPNKIT--FNSVLNACSHGGFVEE-----GLFEKAEVIMQMMPMEPDAS 344
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V AL+ ACR + + LGK+ L+E + + +VLLSNIYA W GV VR+ M
Sbjct: 345 VWKALVGACRTYKNFKLGKKAGRRLIEAAPNDHTGYVLLSNIYALDGNWKGVHNVRKRMF 404
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
D+ V+KVPG S IEVDGV+ EF+SG++++ +++ +L I + LK + D ++V
Sbjct: 405 DSGVQKVPGSSSIEVDGVIHEFISGDKSHSRKKDVYEMLGEICQQLKIAGYAPDTSQV 462
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 11/172 (6%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACADTS 102
F + R + WNT+I E +A A++++ML + P+ T I+ A A
Sbjct: 159 FFSRMPARDSVSWNTVIACCIVNGEYEEAIAVFQEMLACQECQPDRVTLVSIISAIAYLG 218
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS-VNRDVISWTSLI 161
L G HA V R G E + + + L+++Y+ C ++ A +F+ S R V +W ++I
Sbjct: 219 ALAQGFWAHAYVCRKGIEVEEKLSSALINMYSKCGFIEGAVYVFENSCAMRSVDTWNAMI 278
Query: 162 NGYAKSGQISIARQMFDKMPE----KNAVSWSAMIN-----GYVQVDLFKEA 204
G+ +G A ++F +M N +++++++N G+V+ LF++A
Sbjct: 279 TGFTANGCSERALELFTRMESTGFVPNKITFNSVLNACSHGGFVEEGLFEKA 330
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R+ WN MI GF +A L+ +M + F+PN TF+ +L AC+ + GL
Sbjct: 269 RSVDTWNAMITGFTANGCSERALELFTRMESTGFVPNKITFNSVLNACSHGGFVEEGLFE 328
Query: 111 HAQVI--RLGWESYDFV---LNGLLHLYATCNCMDPA-RKLFDMSVNRDVISWTSLINGY 164
A+VI + E V L G Y A R+L + + N D + L N Y
Sbjct: 329 KAEVIMQMMPMEPDASVWKALVGACRTYKNFKLGKKAGRRLIEAAPN-DHTGYVLLSNIY 387
Query: 165 AKSGQI----SIARQMFD----KMPEKNAVSWSAMINGYV--------QVDLFKEALEHF 208
A G ++ ++MFD K+P +++ +I+ ++ + D+++ E
Sbjct: 388 ALDGNWKGVHNVRKRMFDSGVQKVPGSSSIEVDGVIHEFISGDKSHSRKKDVYEMLGEIC 447
Query: 209 NYMQLCGFRPNHAGIV 224
+++ G+ P+ + ++
Sbjct: 448 QQLKIAGYAPDTSQVL 463
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 163/459 (35%), Positives = 242/459 (52%), Gaps = 61/459 (13%)
Query: 39 SHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIK---AFALYKQMLRS-DFLPNNYTFSFI 94
S+ LF + T F +N++IR + +Y++MLR+ LPN++T +F
Sbjct: 78 SYARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFA 137
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L+AC+ L G H+Q R G E +V GLL+LY
Sbjct: 138 LKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLY--------------------- 176
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
AK ++++AR +FD M +KN +WSAMI GY +V + EAL F MQ
Sbjct: 177 ----------AKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQA 226
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P+ +V ++ACA GALD GRW+HA++DR GI +D+ L TA+IDMYAKCG IE
Sbjct: 227 ADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIER 286
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
A VFD+M RD A++++I GLA H A++LF RM V PN
Sbjct: 287 AKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAH 346
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+M E+ GI+P +++YGC+VDL R+ +L+ A V M I P++ +
Sbjct: 347 SGLVNEGRRYWSTMQEL-GIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWR 405
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
LL A + D+ + + L+E + +VLLSN+YAS QW+ V +R+ M++N
Sbjct: 406 TLLVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENN 465
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
V V GCS IE++G + +FV + ++ ++EI LLL I
Sbjct: 466 VNVVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREI 504
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 245/474 (51%), Gaps = 57/474 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ +F + + + WN MI G+A+ + +A AL+ +M+ + + L
Sbjct: 210 GDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC + CL G+ H ++R+G +S V+N L+ +Y+ C
Sbjct: 270 QACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK------------------ 311
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
++ +A +FD++ + VSW+AMI G Q ++A+ F MQL
Sbjct: 312 -------------RVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ +V + A A + Q RWIH Y R ++ D+ + TA+IDMYAKCG + A
Sbjct: 359 VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+F+S R V + ++I G +H +A+ELF M+ G+VPNE
Sbjct: 419 ILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM E YG+EPG++HYG +VDLLGRAG L+ A +++MP++P V GA+
Sbjct: 479 LVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGV-HVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
L AC++H +V+L +E+ + + E EGV HVLL+NIYA+ W V +VR ME N +
Sbjct: 539 LGACKLHKNVELAEESAQKIFELG-PQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+K PG S+I++ + F SG + +EI L + + +K++ + D + +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI 651
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 136/279 (48%), Gaps = 32/279 (11%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADT 101
R+F + R WN ++ G+A A + +M + P++ T +L ACA+
Sbjct: 115 RVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANA 174
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
L HA IR G E +L +++ T+++
Sbjct: 175 RALAACREAHAFAIRSGLE-----------------------ELVNVA--------TAIL 203
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
+ Y K G I AR +FD MP KN+VSW+AMI+GY Q +EAL FN M G
Sbjct: 204 DAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDV 263
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
++ AL AC LG LD+G +H + R G++ ++ + A+I MY+KC ++ A VFD +
Sbjct: 264 SVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL 323
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
R ++ ++I G A + S A+ LF RMQLE V P+
Sbjct: 324 DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPD 362
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 32/259 (12%)
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+R A +++ A A + M + P TF+ +L+ CA L G HAQ+ G
Sbjct: 31 LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARG- 89
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
++ + ++ T+L N YAK + + AR++FD+
Sbjct: 90 ------------------------------IDSEALAATALANMYAKCRRPADARRVFDR 119
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNHAGIVGALTACAFLGALDQ 238
MP ++ V+W+A++ GY + L + A+E MQ G RP+ +V L ACA AL
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
R HA+ R+G+E + + TAI+D Y KCG I A VFD MP ++ ++ ++I G A
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239
Query: 299 HDQSASAIELFMRMQLEGV 317
+ S A+ LF RM EGV
Sbjct: 240 NGDSREALALFNRMVEEGV 258
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 245/474 (51%), Gaps = 57/474 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD+ +F + + + WN MI G+A+ + +A AL+ +M+ + + L
Sbjct: 210 GDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC + CL G+ H ++R+G +S V+N L+ +Y+ C
Sbjct: 270 QACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK------------------ 311
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
++ +A +FD++ + VSW+AMI G Q ++A+ F MQL
Sbjct: 312 -------------RVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P+ +V + A A + Q RWIH Y R ++ D+ + TA+IDMYAKCG + A
Sbjct: 359 VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+F+S R V + ++I G +H +A+ELF M+ G+VPNE
Sbjct: 419 ILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM E YG+EPG++HYG +VDLLGRAG L+ A +++MP++P V GA+
Sbjct: 479 LVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGV-HVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
L AC++H +V+L +E+ + + E EGV HVLL+NIYA+ W V +VR ME N +
Sbjct: 539 LGACKLHKNVELAEESAQKIFELG-PQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+K PG S+I++ + F SG + +EI L + + +K++ + D + +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI 651
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 136/279 (48%), Gaps = 32/279 (11%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADT 101
R+F + R WN ++ G+A A + +M + P++ T +L ACA+
Sbjct: 115 RVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANA 174
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161
L HA IR G E +L +++ T+++
Sbjct: 175 RALAACREAHAFAIRSGLE-----------------------ELVNVA--------TAIL 203
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
+ Y K G I AR +FD MP KN+VSW+AMI+GY Q +EAL FN M G
Sbjct: 204 DAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDV 263
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
++ AL AC LG LD+G +H + R G++ ++ + A+I MY+KC ++ A VFD +
Sbjct: 264 SVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL 323
Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
R ++ ++I G A + S A+ LF RMQLE V P+
Sbjct: 324 DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPD 362
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 116/246 (47%), Gaps = 30/246 (12%)
Query: 72 AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
A A + M + P TF+ +L+ CA L G HAQ+ G +S L +
Sbjct: 43 ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+YA C AR++FD RD ++W +L+ GYA++G +A +M +M E+
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE------- 155
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
G RP+ +V L ACA AL R HA+ R+G+
Sbjct: 156 -----------------------GERPDSITLVSVLPACANARALAACREAHAFAIRSGL 192
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
E + + TAI+D Y KCG I A VFD MP ++ ++ ++I G A + S A+ LF R
Sbjct: 193 EELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNR 252
Query: 312 MQLEGV 317
M EGV
Sbjct: 253 MVEEGV 258
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 250/464 (53%), Gaps = 32/464 (6%)
Query: 39 SHGYRLFVCLQYRT--TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96
S+ Y +F R F++N +I N + A ++++ + R ++Y+ ++L+
Sbjct: 62 SYSYSIFTFNHNRPFPIFVYNNIIYALYSSNAKL-AVSIFRSVRRLGLSFDSYSLPYVLK 120
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
+ + +G H + G + V + L+ +Y +C + ARKLFD +
Sbjct: 121 SVVCLNDFGLGKQIHCVGVVTGLDKNVSVCSSLIQMY-SCYDVCSARKLFDEFGGNGCV- 178
Query: 157 WTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
++I Y K G +S AR++FD M E K+ SW+AMI+GY Q EA++ F MQL
Sbjct: 179 LNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLE 238
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ I+ L+ACA LGAL G WIH Y++++ + + L ++IDMYAK G I A
Sbjct: 239 NVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKA 298
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VVPNE------------ 321
+F++M ++ + +T++I+GLA H A+ +F M+ E V PNE
Sbjct: 299 LELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSH 358
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
SM YGIEP ++HYGC++DLLGRAG L+ AK++V MP E + + G
Sbjct: 359 VGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWG 418
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+LL A GD +L +E + L H G + LLSN YAS +WN VR+ M+D
Sbjct: 419 SLLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYASLGRWNESRMVRKVMQDAG 478
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
V KVPG S IEV+ +V EF++G++ ++ +I +L +D +K
Sbjct: 479 VEKVPGVSFIEVNNIVYEFIAGDKLSIYFVDIYDVLHSLDGQIK 522
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/482 (33%), Positives = 255/482 (52%), Gaps = 70/482 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQI + + ++G + GKII FC+ S ++++ +F + +F+WNTMI
Sbjct: 25 LNHLKQIHARIFLTGFNHNLILSGKIIMFCAVSQ--NMNYALNVFDKIPKPDSFLWNTMI 82
Query: 61 RGFAEKN-EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
RGF A +K+M + P+N+TFSFIL+ A + +G H + + G+
Sbjct: 83 RGFGNSTTHSHNAIHFFKRMQLAH-RPDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGF 141
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E++ +V N L+H+Y I IA Q+F++
Sbjct: 142 ENHTYVRNSLIHMYGMLK-------------------------------DIEIAHQLFEE 170
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYM---QLCG--FRPNHAGIVGALTACAFLG 234
M + N VSW+++I+ +V + EA++ F M Q G +P+HA +V L+AC +G
Sbjct: 171 MYQPNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIG 230
Query: 235 ALDQGRWIHAYVDRNGIEL---DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
+LD GR +H++V R+G+ I + A++DMYAKCG +E A F +M ++V ++
Sbjct: 231 SLDFGRKVHSFV-RDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNV 289
Query: 292 LISGLANHDQSASAIELFMRMQLEGV-VPNES------------------------MSEI 326
+I G A+H A+ LF RM E V P+E M+
Sbjct: 290 MILGFASHGNGEEALALFTRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRD 349
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I+P ++HYGC+VDLLGRAG+ A ++++ MP+E + + LL ACR +G+V+LG++
Sbjct: 350 YNIKPTIKHYGCMVDLLGRAGLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVELGEK 409
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV-PGCSLIEVDGVV 445
+ L+E DH +VLL+N+YAST QWN + K RR M++ VRK PG S I + G
Sbjct: 410 VRKHLMELEPDHSSDYVLLANMYASTGQWNEMSKERRSMQERRVRKPEPGNSFIGIPGTR 469
Query: 446 CE 447
E
Sbjct: 470 FE 471
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 120/284 (42%), Gaps = 46/284 (16%)
Query: 129 LLHLYATCNCMDPAR----KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
L++L+ C+ ++ + ++F N ++I +I A S ++ A +FDK+P+ +
Sbjct: 15 LMNLFNHCSTLNHLKQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPD 74
Query: 185 AVSWSAMINGYVQVDLFKE-ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ W+ MI G+ A+ F MQL RP++ L A L ++ G+ +H
Sbjct: 75 SFLWNTMIRGFGNSTTHSHNAIHFFKRMQL-AHRPDNFTFSFILKIIARLRFVNLGKQLH 133
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+ + G E + ++I MY IE A +F+ M ++ ++ S+I +
Sbjct: 134 CSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKYN 193
Query: 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
AI+LF +M + QH G M ++P
Sbjct: 194 EAIDLFTKMVQQ------------------QHNG---------------------MELQP 214
Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
D+ L L+AC G +D G++ V S V ++ G + + N
Sbjct: 215 DHATLVVTLSACGAIGSLDFGRK-VHSFVRDGVNSFGESISVFN 257
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 240/458 (52%), Gaps = 37/458 (8%)
Query: 48 LQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFV 106
+ +R W +++ + N K ++ + S L P+++ FS +++ACA+ + +
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
G H I + + D V + L+ +YA C +D A+ +FD ++ ISWT++++GYAK
Sbjct: 61 GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226
SG+ A ++F ++P KN SW+A+I+G+VQ EA F M R I+
Sbjct: 121 SGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEM-----RRERVDILDP 175
Query: 227 LT------ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
L ACA L A GR +H V G + + + A+IDMYAKC + A +F
Sbjct: 176 LVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSR 235
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------- 321
M +RDV ++TSLI G+A H Q+ A+ L+ M GV PNE
Sbjct: 236 MRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKG 295
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
SM++ YGI P +QHY CL+DLLGR+G+L+ A+ ++ MP PD ALL+AC+
Sbjct: 296 RELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACK 355
Query: 377 VHGDVDLGKETVESLVER-SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
G +G + LV ++LLSNIYAS W V + RR + D EVRK PG
Sbjct: 356 RQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPG 415
Query: 436 CSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
S +EV F +GE ++ L E+I LL +++ ++
Sbjct: 416 YSSVEVRKETEVFYAGETSHALKEDIFRLLKKLEEEMR 453
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 129/277 (46%), Gaps = 36/277 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS--DFLPNNYTFSF 93
G LF L + + W +I GF + + ++AF+++ +M R D L + S
Sbjct: 122 GRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDIL-DPLVLSS 180
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
I+ ACA+ + G H VI LG++S F+ N L+ +YA C+ + A+ +F +RD
Sbjct: 181 IVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 240
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V+SWTSLI G A+ GQ A ++D+M + H
Sbjct: 241 VVSWTSLIVGMAQHGQAEKALALYDEM------------------------VSH------ 270
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIE 272
G +PN VG + AC+ +G + +GR + + ++ GI + T ++D+ + G ++
Sbjct: 271 -GVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLD 329
Query: 273 TACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIEL 308
A ++ +MP D + +L+S Q + +
Sbjct: 330 EAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRI 366
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F +++R W ++I G A+ + KA ALY +M+ PN TF ++ AC+
Sbjct: 232 IFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGF 291
Query: 104 LFVGLICHAQV-----IRLGWESYDFVLNGLLHLYATCNCMDPARKLF-DMSVNRDVISW 157
+ G + IR + Y LL L +D A L M D +W
Sbjct: 292 VAKGRELFQSMTKDYGIRPSLQHY----TCLLDLLGRSGLLDEAENLIHTMPFPPDEPTW 347
Query: 158 TSLINGYAKSGQ----ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
+L++ + GQ + IA + K+ ++ + N Y L+ + E
Sbjct: 348 AALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSE 400
>gi|224080303|ref|XP_002306089.1| predicted protein [Populus trichocarpa]
gi|222849053|gb|EEE86600.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 234/459 (50%), Gaps = 31/459 (6%)
Query: 36 GDLSHGYRLF-VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
GD+ RLF + + WNT+I G+ + P++A L+ M + N +TF +
Sbjct: 206 GDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEHTFGSV 265
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L ACAD L +G HA +++ G S FV +G++ +Y C M A L R
Sbjct: 266 LSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLLLTRGVRSS 325
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV---QVDLFKEALEHFNYM 211
S TS+I G++ G + A ++FD + EKN++ W+A+ +GYV Q + F E L Y+
Sbjct: 326 FSITSMIVGFSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLRE--YI 383
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
P+ ++ A CAF AL G+ IH YV R GIE+D+ TA+IDMY+KCG I
Sbjct: 384 AKEAAIPDALILISAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSI 443
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
A +F + RD+ Y +++G A+H AI LF M GV P+
Sbjct: 444 PYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTFVALLSAC 503
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE-PDNY 366
SM+E Y I P HY C++DL GRA LE ++ +P+E D
Sbjct: 504 RHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFMQRIPMEHQDAA 563
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V+GA NACR++ + +L KE E L+ D +V L+N+YA+ W + ++RR M
Sbjct: 564 VVGAFFNACRLNNNTELAKEAEEKLLNIEGDSGARYVQLANVYAAEGNWAEMGRIRREMR 623
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
E +K GCS + +D V F SG+RT+ E I +L
Sbjct: 624 GKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESIYSML 662
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 168/361 (46%), Gaps = 27/361 (7%)
Query: 37 DLSHGYRLFVCLQYRTTFIWNTMIRGFA-----EKNEPIKAFALYKQM--LRSDFLPNNY 89
+L+ +F R +N+M+ G+ E+N A L+ +M +R++ ++
Sbjct: 69 NLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERN----ALELFVEMQSIRNEIEIDDL 124
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF--- 146
T + ++ + G H+ +++ G + FV++ L+ +Y+ C C A ++F
Sbjct: 125 TITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFKGC 184
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN-AVSWSAMINGYVQVDLFKEAL 205
+ D++S +++ Y + G + +A ++F + E N +VSW+ +I+GYVQ EAL
Sbjct: 185 EREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEAL 244
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
+ F M G + N L+ACA L L G+ +HA++ +NG+ + + I+D+Y
Sbjct: 245 KLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVY 304
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325
KCG ++ A S+ + R F+ TS+I G ++ A LF ++ + + ++
Sbjct: 305 CKCGNMKYAESLLLTRGVRSSFSITSMIVGFSSQGNMVEACRLFDSLEEKNSIVWAALFS 364
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
Y V L E ++ + + PD +L + N C + GK
Sbjct: 365 GY------------VKLKQCEAFFELLREYIAKEAAIPDALILISAFNVCAFQAALGPGK 412
Query: 386 E 386
+
Sbjct: 413 Q 413
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 30/292 (10%)
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
GL+ H + I+ G+ N L+HLY+ ++ A+KLFD R+ SW ++I+ + K
Sbjct: 7 GLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTIISAHIK 66
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF-KEALEHFNYMQLCGFRPNHAGIVG 225
S ++ A+ +FD ++ V++++M++GYV VD + + ALE F MQ + +
Sbjct: 67 SQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQ----SIRNEIEID 122
Query: 226 ALTACAFLGALDQ------GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
LT + + + GR +H+Y+ + G + + +++IDMY+KCGC + AC VF
Sbjct: 123 DLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFK 182
Query: 280 SMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336
D+ + ++++ A+ LF R N+S+S I VQ+
Sbjct: 183 GCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRES----ELNDSVSWNTLISGYVQN- 237
Query: 337 GCLVDLLGRAGMLEAAKKVV--REMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+EA K V E ++ + + G++L+AC ++ +GKE
Sbjct: 238 ---------GYPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKE 280
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 108/282 (38%), Gaps = 36/282 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+K +S L G I+GF S G++ RLF L+ + + +W + G
Sbjct: 309 NMKYAESLLLTRGVRSSFSITSMIVGFSSQ---GNMVEACRLFDSLEEKNSIVWAALFSG 365
Query: 63 FAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ + + F L ++ + + +P+ CA + L G H V R+G E
Sbjct: 366 YVKLKQCEAFFELLREYIAKEAAIPDALILISAFNVCAFQAALGPGKQIHGYVFRMGIEM 425
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
++ +Y+ C + A KLF + RD++ + ++ GYA G A
Sbjct: 426 DMKTTTAMIDMYSKCGSIPYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKA-------- 477
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-R 240
++LF+E LE G P+ V L+AC G +D G +
Sbjct: 478 ----------------INLFQEMLER-------GVGPDAVTFVALLSACRHRGLVDLGEK 514
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
++ + I + +ID+Y + +E +P
Sbjct: 515 TFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFMQRIP 556
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+ +L G H ++G L I+ ++ +Y+K I A +FD MP R+ +++ ++
Sbjct: 1 MRSLKDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTI 60
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESM 323
IS A A +F + +V SM
Sbjct: 61 ISAHIKSQNLAQAKSIFDSASVRDLVTYNSM 91
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 248/466 (53%), Gaps = 68/466 (14%)
Query: 8 QSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN 67
+S+L VS L +A+ +GF ++F + R WNT+I G+++ N
Sbjct: 56 ESYLFVSNALIHMYAMCGQLGFAQ-----------KMFDGMLDRDLVSWNTLICGYSQYN 104
Query: 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG-WESYDFVL 126
+ + L+ M ++ + T I+ AC+ LG WE D ++
Sbjct: 105 KYKEVLRLFDAMTAANIKADAVTMVKIILACS----------------HLGDWEFADSMV 148
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
+ + + ++ DV +LI+ Y + G ++ AR++FD MP+++ +
Sbjct: 149 ----------------KYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVI 192
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
SW++MI GY Q F +A++ F M +P+ + L+ACA LG LD G +H Y+
Sbjct: 193 SWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYI 252
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
R+G++ DI +G ++IDMY KCG +E A VF M ++D ++TS+ISGLA + + SA+
Sbjct: 253 RRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSAL 312
Query: 307 ELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDL 342
+LF +M EGV P ESM ++G+ P ++HYGC+VDL
Sbjct: 313 DLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDL 372
Query: 343 LGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402
L R+G ++ A + +++MPI PD V LL+AC++HG+V L + + L+E G +
Sbjct: 373 LSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNY 432
Query: 403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
VLLSN YA ++W+ K+R MED++V+K G S IEVDG+V +
Sbjct: 433 VLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 478
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 142/292 (48%), Gaps = 55/292 (18%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H ++LG+ESY FV N L+H+YA C + A+K+FD ++RD++SW +LI GY+
Sbjct: 47 HVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYS----- 101
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
Q + +KE L F+ M + + +V + AC
Sbjct: 102 --------------------------QYNKYKEVLRLFDAMTAANIKADAVTMVKIILAC 135
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
+ LG + + Y+ N +E+D+ LG +IDMY + G + A +FD+MP RDV ++T
Sbjct: 136 SHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWT 195
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPG--VQHY---- 336
S+I+G + Q + A++LF M V P++ + + + ++ G V HY
Sbjct: 196 SMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRH 255
Query: 337 ---------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+D+ + GM+E A +V M + D+ ++++ V+G
Sbjct: 256 GVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSVSWTSVISGLAVNG 306
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 59/221 (26%)
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
A +V ALT + A IH + + G E + + A+I MYA CG + A +FD
Sbjct: 27 AALVVALTTN--INASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDG 84
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIY------------ 327
M +RD+ ++ +LI G + +++ + LF M + + +M +I
Sbjct: 85 MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFA 144
Query: 328 ----------GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP----------------- 360
+E V L+D+ GR G L AA+K+ MP
Sbjct: 145 DSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQA 204
Query: 361 -----------------IEPDNYVLGALLNACRVHGDVDLG 384
++PD + ++L+AC G +D+G
Sbjct: 205 SQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG 245
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/460 (31%), Positives = 239/460 (51%), Gaps = 27/460 (5%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+ +I H G + + C++ + + + RLF ++N +I+
Sbjct: 23 HLTEIHGHFLRHGLQQSNQILAHFVSVCAS--LRRVPYATRLFAHTHNPNILLFNAIIKA 80
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ +F+ + M P+ YT + + ++ ++ +G HA V+RLG+ +
Sbjct: 81 HSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRH 140
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
V L +YA+C M A K+FD + DV+ W +I G+ K G + ++F +M E
Sbjct: 141 ASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKE 200
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+ VSW+ M++ + + ++ALE FN M GF P+ A +V L CA LGA+D G WI
Sbjct: 201 RTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWI 260
Query: 243 HAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H+Y + G D I +G +++D Y KCG ++ A S+F+ M +++V ++ ++ISGLA + +
Sbjct: 261 HSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGE 320
Query: 302 SASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYG 337
+ LF M G PN+ SMS + + P ++HYG
Sbjct: 321 GEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYG 380
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VDLLGR G + A+ ++ MP++P + GALL+ACR +GD ++ + + LV
Sbjct: 381 CVVDLLGRCGHVREARDLITSMPLKPTAALWGALLSACRTYGDREIAENAAKELVRLEPW 440
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
+ G +VLLSN+YA +W+ VEKVR M V+KVPG S
Sbjct: 441 NSGNYVLLSNVYAEEGRWDEVEKVRVLMRGGGVKKVPGQS 480
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/485 (32%), Positives = 245/485 (50%), Gaps = 63/485 (12%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
DPF K+I S D D + ++F + RT ++WN + R A LY +
Sbjct: 103 DPFLATKLINMFSELDTVD--NARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPR 160
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFV----GLICHAQVIRLGWESYDFVLNGLLHLYA 134
M + +T++++L+AC + CL G HA ++R G+ ++ V+
Sbjct: 161 MNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVM-------- 212
Query: 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
T+L++ YA+ G +S A +FD+MP KN VSWSAMI
Sbjct: 213 -----------------------TTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIAC 249
Query: 195 YVQVDLFKEALEHFNYMQLCGFR--PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252
Y + EALE F M L PN +V L ACA AL+QG+ IHAY+ R G++
Sbjct: 250 YAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLD 309
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312
+ + +A+I MYA+CG +E+ +FD M +DV + SLIS H AI++F M
Sbjct: 310 SILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEM 369
Query: 313 QLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
G P+ ESM + +GI+P V+HY C+VDLLGRA
Sbjct: 370 IDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANR 429
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408
L+ A K++ ++ IEP V G+LL ACR+H V+L + + L + + G +VLL++I
Sbjct: 430 LDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADI 489
Query: 409 YASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
YA E W+ V++V++ ++ E++KVPG S IEV + F S + N E++ LL +
Sbjct: 490 YAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNL 549
Query: 469 DKHLK 473
+K
Sbjct: 550 SNEMK 554
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 160/354 (45%), Gaps = 67/354 (18%)
Query: 74 ALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133
ALY +L + P T ++ + A + L L H ++ G++ F+ L++++
Sbjct: 57 ALY--LLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMF 114
Query: 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMIN 193
+ + +D ARK+FD + R + W +L A +G+ + +++ +M
Sbjct: 115 SELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRM------------- 161
Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA----FLGALDQGRWIHAYVDRN 249
++ + + F Y L L AC + L +G+ IHA++ R+
Sbjct: 162 -----NMMGVSSDRFTYTYL-------------LKACVASECLVSFLQKGKEIHAHILRH 203
Query: 250 GIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
G + + T ++DMYA+ GC+ A +VFD MP ++V +++++I+ A + + A+ELF
Sbjct: 204 GYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELF 263
Query: 310 MRMQL--EGVVPN--------ESMSEIYGIEPG--VQHY-------------GCLVDLLG 344
M L VPN ++ + +E G + Y L+ +
Sbjct: 264 REMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYA 323
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
R G LE+ + + M + D + +L+++ +HG G++ ++ + E +DH
Sbjct: 324 RCGKLESGQLIFDRMH-KKDVVLWNSLISSYGLHG---YGRKAIK-IFEEMIDH 372
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 241/456 (52%), Gaps = 23/456 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+D+GDL R+ + R W T+I +K + +A LY QML PN FS
Sbjct: 324 ADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFS 383
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L ACA L G HA +++G + FV + L+ +Y C A+++F+ +
Sbjct: 384 SVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEK 443
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+ + W SLI+GY+ +G++ A +F+KMP +N+VSW+ MI+GY + F +AL +F M
Sbjct: 444 NTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAML 503
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G P + L ACA L +L+ GR +HA + + GIE +I +GTA+ DMYAK G ++
Sbjct: 504 ASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLD 563
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
++ VF MP ++ +T+++ GLA + + +I LF M G+ PNE
Sbjct: 564 SSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ +GI P +HY C+VD+L RAG L A++++ ++ E D
Sbjct: 624 HCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWS 683
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+LL+AC + + ++G+ + L E D+ +VLLSN+YAS +W + R M+
Sbjct: 684 SLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGAS 743
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
++K GCS +++ G F S + + L EI +L
Sbjct: 744 LKKDAGCSWLQLRGQYHAFFSWKEKHPLSLEIYEIL 779
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 185/434 (42%), Gaps = 65/434 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + L+ + + MI GF AF ++++ML PN T ++
Sbjct: 194 GSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVI 253
Query: 96 RACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+AC D + VGL + E V N L+ LY AR++FD
Sbjct: 254 KACVGAGEFDLAMGVVGLAVKCNLFEKSIE----VHNSLITLYLRMGDAAAARRVFDDME 309
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
RDV+SWT+L++ YA G + AR++ D MP +N VSW +I + Q EAL+ ++
Sbjct: 310 VRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQ 369
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-- 268
M G RPN + L+ACA L L G IHA + G ++ + +++IDMY KC
Sbjct: 370 MLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQ 429
Query: 269 -----------------------------GCIETACSVFDSMPNRDVFAYTSLISGLANH 299
G + A +F+ MP R+ ++ ++ISG A +
Sbjct: 430 CTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAEN 489
Query: 300 DQSASAIELFMRMQLEGVVPNE-SMSEI----------------------YGIEPGVQHY 336
+ A+ F M G +P E ++S + GIE +
Sbjct: 490 RRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMG 549
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L D+ ++G L+++++V +MP E +N A++ +G + E ++E +
Sbjct: 550 TALCDMYAKSGDLDSSRRVFYQMP-EKNNITWTAMVQGLAENGFAEESISLFEDMIENGI 608
Query: 397 DHEGVHVLLSNIYA 410
H L+ ++A
Sbjct: 609 -APNEHTFLAILFA 621
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 136/340 (40%), Gaps = 86/340 (25%)
Query: 69 PIKAFALYKQ------MLRSDFLPNNYTFSFILRAC--------------ADTSCLFVGL 108
PIKAF L DF + T + +LR C + CL + L
Sbjct: 41 PIKAFKLRLANGPPLAPTAKDFKTYSETCASLLRLCRAMSATSTTMPSYAPSSGCLPLVL 100
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYAT-------------CNCMDPA------------- 142
HA +R G + V + LL YA C D A
Sbjct: 101 SLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHV 160
Query: 143 --------RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
R+LF + V+S+T++++ K G + A +++++ P + ++AMI+G
Sbjct: 161 KAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISG 220
Query: 195 YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ-----GRWIHAYVDRN 249
+V+ +L K+A F M C RPN ++ + AC G D G + +
Sbjct: 221 FVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEK 280
Query: 250 GIEL---------------------------DIILGTAIIDMYAKCGCIETACSVFDSMP 282
IE+ D++ TA++D+YA G ++ A V D+MP
Sbjct: 281 SIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMP 340
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
R+ ++ +LI+ +A A++L+ +M +G PN S
Sbjct: 341 ARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNIS 380
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++ + K G I +A +F MP + V +YT+++ L A+EL+ R L V
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVA-- 212
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRV 377
+ ++ R + + A V R+M + P+ L ++ AC
Sbjct: 213 --------------FFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVG 258
Query: 378 HGDVDLGKETVE-----SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
G+ DL V +L E+S++ VH L +Y + RR +D EVR
Sbjct: 259 AGEFDLAMGVVGLAVKCNLFEKSIE---VHNSLITLYL---RMGDAAAARRVFDDMEVRD 312
Query: 433 V 433
V
Sbjct: 313 V 313
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 235/458 (51%), Gaps = 60/458 (13%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W TMI ++ KA MLR PN +T+S +LRAC LF
Sbjct: 29 RNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRAC---DGLFNLRQL 85
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H +I++G +S DV ++LI+ Y++ G++
Sbjct: 86 HCCIIKIGLDS-------------------------------DVFVRSALIDVYSRWGEL 114
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A ++FD+M + V WS++I G+ Q EAL F M+ GF + L AC
Sbjct: 115 ENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRAC 174
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
L L+ GR +H +V + + D+IL A++DMY KCG +E A +VF M +DV +++
Sbjct: 175 TGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWS 232
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
++I+GLA + S A++LF M++ G+ PN SM E+
Sbjct: 233 TMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKEL 292
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+GI+PG +HYGC++DLLGRAG L A ++ EM EPD ALLNACRVH +VD+
Sbjct: 293 FGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIH 352
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+ ++ G +VLLSNIYA+T++WN V +VRR M + ++K PGCS IEV +
Sbjct: 353 AAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIH 412
Query: 447 EFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
F+ G+R++ + EI + L + L + + D N V
Sbjct: 413 AFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFV 450
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
LIN Y K G + A+ +FDKMP++N VSW+ MI+ Y L +ALE M G RPN
Sbjct: 6 LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65
Query: 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
L AC L L Q +H + + G++ D+ + +A+ID+Y++ G +E A VFD
Sbjct: 66 MFTYSSVLRACDGLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
M D+ ++S+I+G A + A+ LF RM+ G + ++
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQT 165
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 229/447 (51%), Gaps = 57/447 (12%)
Query: 33 SDIGDLSHGYRLF--VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90
S G+L LF + R+ WN+MI +A + +KA YK ML F P+ T
Sbjct: 200 SKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDIST 259
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+L +C LF GL+ H+ ++LG +S V+N L+ CM
Sbjct: 260 ILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLI-------CM----------- 301
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
Y+K G + AR +F+ M +K VSW+ MI+ Y + EA+ FN
Sbjct: 302 -------------YSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNA 348
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M+ G +P+ ++ ++ C GAL+ G+WI Y NG++ ++++ A+IDMYAKCG
Sbjct: 349 MEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGG 408
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------- 321
A +F +M NR V ++T++I+ A + A+ELF M G+ PN
Sbjct: 409 FNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQA 468
Query: 322 ---------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
M++ YGI PG+ HY C+VDLLGR G L A ++++ MP EPD+
Sbjct: 469 CAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSG 528
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ ALL+AC++HG +++GK E L E +V ++NIYAS E W GV +RR M+
Sbjct: 529 IWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMK 588
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGER 453
+VRK PG S+I+V+G F +R
Sbjct: 589 YLQVRKSPGQSIIQVNGKPTIFTVEDR 615
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 33/276 (11%)
Query: 49 QYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL 108
++ T F WN+ R + A L++QM +S PNN TF F+L+ACA S L
Sbjct: 14 RFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQ 73
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
I HA V++ ++S FV T+ ++ Y K G
Sbjct: 74 IIHAHVLKSCFQSNIFV-------------------------------QTATVDMYVKCG 102
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228
++ A +F +MP ++ SW+AM+ G+ Q +M+L G RP+ ++ +
Sbjct: 103 RLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLID 162
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDV 286
+ + +L ++++ R G+ +D+ + +I Y+KCG + +A ++FD + + R V
Sbjct: 163 SILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSV 222
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
++ S+I+ AN ++ A+ + M G P+ S
Sbjct: 223 VSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDIS 258
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 155/374 (41%), Gaps = 63/374 (16%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L + +FV + R WN M+ GFA+ + L + M S P+ T ++
Sbjct: 102 GRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLI 161
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---R 152
+ L ++ IR+G V N L+ Y+ C + A LFD +N R
Sbjct: 162 DSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFD-EINSGLR 220
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
V+SW S+I YA F+K K + M++G
Sbjct: 221 SVVSWNSMIAAYAN----------FEKHV-KAVNCYKGMLDG------------------ 251
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
GF P+ + I+ L++C AL G +H++ + G + D+ + +I MY+KCG +
Sbjct: 252 --GFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVH 309
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
+A +F+ M ++ ++T +IS A + A+ LF M+ G P+
Sbjct: 310 SARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCG 369
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
++ S G++ V L+D+ + G AK++ M + V+
Sbjct: 370 QTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTM---ANRTVVS 426
Query: 370 --ALLNACRVHGDV 381
++ AC ++GDV
Sbjct: 427 WTTMITACALNGDV 440
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 224/421 (53%), Gaps = 27/421 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFI 94
G L +F + R W T+I G+ + +A Y M+ D N +
Sbjct: 224 GMLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMAEVDTRGNAALLVDL 283
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
++ CA + + G H +++ G++++ FV L+H Y +C+ +D AR F +S +
Sbjct: 284 IKVCARHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHI 343
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SW +L++G + ARQ+FD MPE++ +SWS +++GYVQ +AL+ F M
Sbjct: 344 ASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLMLGA 403
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G PN + L+A A G L+QGR+IH Y+ N I+L L +IDMYAKCG + A
Sbjct: 404 GVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDNLSAGLIDMYAKCGSVADA 463
Query: 275 CSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
+F + ++ V + ++I LA H + +++ELF+ +Q + PN
Sbjct: 464 IQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLNACC 523
Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
ESMS YGI+P ++HYGC+VDLLGRAG LE A+ +++ MP+ D +
Sbjct: 524 HAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPMRSDVVIW 583
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G++L A R HG+V LG++ E L + +H V LSNI+A +WN V VR+ ++D
Sbjct: 584 GSILAAARTHGNVALGEKAAEELAKIDPNHGASKVALSNIFAEAARWNNVSLVRKELQDE 643
Query: 429 E 429
+
Sbjct: 644 D 644
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 160/339 (47%), Gaps = 36/339 (10%)
Query: 16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFAL 75
L DP A ++ + + DL+ G + + R T + T++ A A A+
Sbjct: 74 ALRDPAAHNTLLASLARAGRLDLAQG--MLAEMPQRDTVSYTTVLTALARAGHAEDAVAV 131
Query: 76 YKQMLRSDFLPNNYTFSFILRACA-DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA 134
++ ML D PN T + +L A A + + VG + H +R G + V L+H YA
Sbjct: 132 FRGMLAQDVPPNEVTLAGVLTALALERPPVPVG-VAHGVTVRRGLNGFLIVATNLVHAYA 190
Query: 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMING 194
+ + AR++F+ +++ ++W +++NGY K+G + +A ++F ++PE++AVSW +I+G
Sbjct: 191 AASQVCFAREIFEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDG 250
Query: 195 YVQVDLFKEALEHF-NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL 253
Y++ D EAL + M R N A +V + CA A+ +G+ +H + ++G +
Sbjct: 251 YIRADCTSEALRAYVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDA 310
Query: 254 DIILGTAIIDMYAKCGCIET-------------------------------ACSVFDSMP 282
+ +I Y C ++ A +FD MP
Sbjct: 311 HPFVQATLIHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDDMP 370
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
RD ++++L+SG S A++LF M GV PN+
Sbjct: 371 ERDTISWSTLLSGYVQSGHSNKALQLFYLMLGAGVEPND 409
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 225/389 (57%), Gaps = 26/389 (6%)
Query: 123 DFVL-NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
D VL N ++ Y M AR+LFD + DV+SW ++++GYA +G++ + ++F++MP
Sbjct: 55 DVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMP 114
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR-PNHAGIVGALTACAFLGALDQGR 240
+N SW+ +I GYV+ LFKEALE F M + G PN +V L+AC+ LG L+ G+
Sbjct: 115 ARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGK 174
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+H Y D G + ++ +G A+IDMYAKCG IE A VFD + +D+ + ++I+ LA H
Sbjct: 175 WVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHX 234
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+A A+ LF M+ G P+ +SM + Y I P ++HY
Sbjct: 235 HAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHY 294
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
GC+VDLLGRAG++ A +VR+MP+EPD + ALL ACR + +V++ + ++ L+E
Sbjct: 295 GCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEP 354
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
++ G V+LSNIY + V +++ M D RKVPGCS+I + V EF S + +
Sbjct: 355 NNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDERHP 414
Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
+ I L G+ L+S + + +VA
Sbjct: 415 ETDSIYRALQGLTILLRSHGYVPNLVDVA 443
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 43/301 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFI 94
G++ ++F + R + WN +I G+ +A +K+ML + PN+YT +
Sbjct: 101 GEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAV 160
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L AC+ L +G H +G++ FV N L+ +YA C ++ A +FD +D+
Sbjct: 161 LSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDI 220
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
I+W ++IN A + +AL F M+
Sbjct: 221 ITWNTIINSLAMHXHAA-------------------------------DALSLFEGMKRA 249
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIH--AYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G RP+ VG L+AC +G + G ++H + VD I I ++D+ + G I
Sbjct: 250 GERPDGVTFVGILSACTHMGLVRNG-FLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLIN 308
Query: 273 TACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-----MSEI 326
A + MP DV + +L+ G ++ EL ++ +E + PN +S I
Sbjct: 309 QAVDIVRKMPMEPDVVIWAALL-GACRXYKNVEMAELALQRLIE-LEPNNPGNFVMLSNI 366
Query: 327 Y 327
Y
Sbjct: 367 Y 367
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 40/181 (22%)
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
A K+F +++V +WT+++ + + AR++FD P+ + V W+ +++GY+++
Sbjct: 13 AYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDM 72
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
A E F+ M C D++ +
Sbjct: 73 VAARELFDRMPDC---------------------------------------DVMSWNTV 93
Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VVPN 320
+ YA G +E VF+ MP R+V+++ LI G + A+E F RM ++G VVPN
Sbjct: 94 LSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPN 153
Query: 321 E 321
+
Sbjct: 154 D 154
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 51/216 (23%)
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
++ A ++F +M +KN +W+A++ +V A F+ C
Sbjct: 10 VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQC--------------- 54
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
D++L I+ Y + G + A +FD MP+ DV ++
Sbjct: 55 ------------------------DVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSW 90
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
+++SG AN+ + +ELF+++ E +P ++ G+ G G + L
Sbjct: 91 NTVLSGYANNGE----VELFVKVFEE--MPARNVYSWNGLIGGYVRNGLFKE------AL 138
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
E K+++ + + P++Y + A+L+AC GD+++GK
Sbjct: 139 ECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGK 174
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 255/477 (53%), Gaps = 37/477 (7%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ +KQ+QS L VSG F K++ FC+ + +LS+ +F + T ++ ++
Sbjct: 37 LNHLKQVQSFLIVSGLSHSHFLCFKLLRFCTLR-LCNLSYARFIFDRFSFPNTHLYAAVL 95
Query: 61 RGFAEKNEPI---KAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
G++ + P+ AF+ ++ M+ F PN++ + +L++ S F + H + +
Sbjct: 96 TGYSS-SLPLHASSAFSFFRLMVNRSFPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFK 154
Query: 117 LGWESYDFVLNGLLHLYATC-NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
G+ Y V LLH YA+ + + AR+LFD R+V+SWT++++GYA+SG I A
Sbjct: 155 SGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVA 214
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM--QLCGFRPNHAGIVGALTACAFL 233
+F++MPE++ SW+A++ Q LF EA+ F M C RPN +V L+ACA
Sbjct: 215 LFEEMPERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPC-IRPNEVTLVCVLSACAQT 273
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G L + IHA+ R + D+ + +++D+Y KCG +E A SVF + + A+ S+I
Sbjct: 274 GTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGKCGNLEEASSVFKMSSKKSLTAWNSMI 333
Query: 294 SGLANHDQSASAIELF---MRMQLEGVVPN------------------------ESMSEI 326
+ A H +S AI +F M++ + P+ + M +
Sbjct: 334 NCFALHGRSEEAIAVFEDMMKLNSHDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKR 393
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+GIEP ++HYGCL+DLLGRAG + A + + M +E D + G+LLNAC+ +G +DL +
Sbjct: 394 FGIEPRIEHYGCLIDLLGRAGQFDEALETMSTMKMEADEAIWGSLLNACKKYGHLDLAEV 453
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
V++LV + ++ G +++N+Y W + R+ ++ K PG S IE+D
Sbjct: 454 AVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSQIEIDN 510
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 157/469 (33%), Positives = 233/469 (49%), Gaps = 55/469 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F CL R WNTMI G + + +A ++ +ML+ P+ T+ IL
Sbjct: 295 GAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAIL 354
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L G HA+ ++ G S DV
Sbjct: 355 SACARPGGLACGKEIHARAVKDGLVS-------------------------------DVR 383
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+LIN Y+K+G + ARQ+FD+MP+++ VSW+A++ GY E+ F M G
Sbjct: 384 FGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQG 443
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
N + L AC+ AL G+ IHA V + GI D+ + A++ MY KCG +E A
Sbjct: 444 VEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAI 503
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
V + M RDV + +LI GLA + + A++ F M+ E + PN
Sbjct: 504 RVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRN 563
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SM + YGI P +HY C+VD+L RAG L A+ V+ MP +P + GAL
Sbjct: 564 LVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGAL 623
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR HG+V++G++ E ++ + G +V LS IYA+ W V K+R+ M++ V+
Sbjct: 624 LAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVK 683
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
K PG S IEV G V FV+G++++ EEI L + K +KSL + D
Sbjct: 684 KEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPD 732
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 175/379 (46%), Gaps = 56/379 (14%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ H+ G + + + ++ G ++ RLF ++ WN MI G+A
Sbjct: 64 KQVHEHILRFGMKPNVYIINTLLKL--YVHCGSVNEARRLFDKFSNKSVVSWNVMISGYA 121
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +AF L+ M + P+ +TF IL AC+ + L G H +V+ G +
Sbjct: 122 HRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNAT 181
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
V N L+ +YA C + AR++FD +RD +SWT+L YA+S
Sbjct: 182 VGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAES----------------- 224
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
GY Q E+L+ ++ M G RP+ + L+AC L AL++G+ IHA
Sbjct: 225 ---------GYAQ-----ESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHA 270
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ + D+ + TA+ MY KCG ++ A VF+ +PNRDV A+ ++I GL + Q
Sbjct: 271 QIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEE 330
Query: 305 AIELFMRMQLEGVVPNESM-----------------SEIY------GIEPGVQHYGCLVD 341
A +F RM E V P+ EI+ G+ V+ L++
Sbjct: 331 AHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALIN 390
Query: 342 LLGRAGMLEAAKKVVREMP 360
+ +AG ++ A++V MP
Sbjct: 391 MYSKAGSMKDARQVFDRMP 409
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 31/286 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F + R W T+ +AE ++ Y ML+ P+ T+ +L
Sbjct: 194 GSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVL 253
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L G HAQ++ + + DV
Sbjct: 254 SACGSLAALEKGKQIHAQIV-------------------------------ESEHHSDVR 282
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+L Y K G + AR++F+ +P ++ ++W+ MI G V +EA F+ M
Sbjct: 283 VSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC 342
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ + L+ACA G L G+ IHA ++G+ D+ G A+I+MY+K G ++ A
Sbjct: 343 VAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDAR 402
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
VFD MP RDV ++T+L+ G A+ Q + F +M +GV N+
Sbjct: 403 QVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANK 448
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 31/235 (13%)
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
++Y + +L++C L VG H ++R G + +++N LL LY C ++ AR+LF
Sbjct: 43 DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102
Query: 147 DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
D N+ V+SW +I+GYA G L +EA
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRG-------------------------------LGQEAFN 131
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
F MQ G P+ V L+AC+ AL+ GR +H V G+ + +G A+I MYA
Sbjct: 132 LFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYA 191
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
KCG + A VFD+M +RD ++T+L A + +++ + M EGV P+
Sbjct: 192 KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSR 246
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 149/342 (43%), Gaps = 36/342 (10%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G + ++F + R W ++ G+A+ + +++F+ +K+ML+ N T+
Sbjct: 393 SKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYM 452
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L+AC++ L G HA+V++ G + V N L+ +Y C ++ A ++ + R
Sbjct: 453 CVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR 512
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV++W +LI G A++G+ EAL+ F M+
Sbjct: 513 DVVTWNTLIGGLAQNGR-------------------------------GLEALQKFEVMK 541
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCI 271
RPN V ++AC +++GR A + ++ GI ++D+ A+ G +
Sbjct: 542 SEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHL 601
Query: 272 ETACSVFDSMPNRDVFA-YTSLISGLANHDQ---SASAIELFMRMQLEGVVPNESMSEIY 327
A V +MP + A + +L++ H A E ++++ + S+S IY
Sbjct: 602 GEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIY 661
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ L L+ G+ + + E+ E ++V G
Sbjct: 662 AAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAG 703
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%)
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
Y+ G + + V L +C L G+ +H ++ R G++ ++ + ++ +Y
Sbjct: 32 LQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVH 91
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
CG + A +FD N+ V ++ +ISG A+ A LF MQ EG+ P++
Sbjct: 92 CGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDK 145
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 241/456 (52%), Gaps = 23/456 (5%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+D+GDL R+ + R W T+I +K + +A LY QML PN FS
Sbjct: 324 ADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFS 383
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L ACA L G HA +++G + FV + L+ +Y C A+++F+ +
Sbjct: 384 SVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEK 443
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+ + W SLI+GY+ +G++ A +F+KMP +N+VSW+ MI+GY + F +AL +F M
Sbjct: 444 NTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAML 503
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G P + L ACA L +L+ GR +HA + + GIE +I +GTA+ DMYAK G ++
Sbjct: 504 ASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLD 563
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
++ VF MP ++ +T+++ GLA + + +I LF M G+ PNE
Sbjct: 564 SSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623
Query: 322 ------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ +GI P +HY C+VD+L RAG L A++++ ++ E D
Sbjct: 624 HCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWS 683
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
+LL+AC + + ++G+ + L E D+ +VLLSN+YAS +W + R M+
Sbjct: 684 SLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGAS 743
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
++K GCS +++ G F S + + L EI +L
Sbjct: 744 LKKDAGCSWLQLRGQYHAFFSWKEKHPLSLEIYEIL 779
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 184/434 (42%), Gaps = 65/434 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + L+ + + MI GF AF ++++ML PN T ++
Sbjct: 194 GSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVI 253
Query: 96 RACA-----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+AC D + VGL + E V N L+ LY A ++FD
Sbjct: 254 KACVGAGEFDLAMGVVGLAVKCNLFEKSIE----VHNSLITLYLRMGDAAAAHRVFDDME 309
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
RDV+SWT+L++ YA G + AR++ D MP +N VSW +I + Q EAL+ ++
Sbjct: 310 VRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQ 369
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-- 268
M G RPN + L+ACA L L G IHA + G ++ + +++IDMY KC
Sbjct: 370 MLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQ 429
Query: 269 -----------------------------GCIETACSVFDSMPNRDVFAYTSLISGLANH 299
G + A +F+ MP R+ ++ ++ISG A +
Sbjct: 430 CTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAEN 489
Query: 300 DQSASAIELFMRMQLEGVVPNE-SMSEI----------------------YGIEPGVQHY 336
+ A+ F M G +P E ++S + GIE +
Sbjct: 490 RRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMG 549
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L D+ ++G L+++++V +MP E +N A++ +G + E ++E +
Sbjct: 550 TALSDMYAKSGDLDSSRRVFYQMP-EKNNITWTAMVQGLAENGFAEESISLFEDMIENGI 608
Query: 397 DHEGVHVLLSNIYA 410
H L+ ++A
Sbjct: 609 -APNEHTFLAILFA 621
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 36/234 (15%)
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+YDF+++ H+ A + AR+LF + V+S+T++++ K G + A +++++
Sbjct: 151 TYDFMVSE--HVKA--GDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERC 206
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ-- 238
P + ++AMI+G+V+ +L K+A F M C RPN ++ + AC G D
Sbjct: 207 PLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAM 266
Query: 239 ---GRWIHAYVDRNGIEL---------------------------DIILGTAIIDMYAKC 268
G + + IE+ D++ TA++D+YA
Sbjct: 267 GVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADL 326
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
G + A V D+MP R+ ++ +LI+ +A A++L+ +M +G PN S
Sbjct: 327 GDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNIS 380
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 30/181 (16%)
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++ + K G I +A +F MP + V +YT+++ L A+EL+ R L V
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVA-- 212
Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRV 377
+ ++ R + + A V R+M + P+ L ++ AC
Sbjct: 213 --------------FFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVG 258
Query: 378 HGDVDLGKETVE-----SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
G+ DL V +L E+S++ VH L +Y + R +D EVR
Sbjct: 259 AGEFDLAMGVVGLAVKCNLFEKSIE---VHNSLITLYL---RMGDAAAAHRVFDDMEVRD 312
Query: 433 V 433
V
Sbjct: 313 V 313
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 246/470 (52%), Gaps = 37/470 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFI 94
G SH ++F + +R W +++ + N K +++ + S L P+++ FS +
Sbjct: 52 GAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSAL 111
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
++ACA+ + G H I + + + V + L+ +YA C ++ A+ +FD ++
Sbjct: 112 VKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNT 171
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
ISWT++++GYAKSG+ A ++F +P KN SW+A+I+G+VQ EA F M
Sbjct: 172 ISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEM--- 228
Query: 215 GFRPNHAGIVGALT------ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
R I+ L ACA L A GR +H V G + + + A+IDMYAKC
Sbjct: 229 --RRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 286
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
+ A +F M +RDV ++TSLI G+A H Q+ A+ L+ M GV PNE
Sbjct: 287 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 346
Query: 322 -----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
SM++ YGI P +QHY CL+DLLGR+G+L+ A+ ++ MP PD
Sbjct: 347 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 406
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVER-SLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
ALL+AC+ G +G + LV L ++LLSNIYAS W V + RR
Sbjct: 407 EPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARR 466
Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+ + EVRK PG S +EV F +GE ++ L E+I LL +++ ++
Sbjct: 467 KLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMR 516
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 30/215 (13%)
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L+ CA L HA +++LG + N L+++Y C A ++FD +RD
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
I+W S++ + A ++G K +
Sbjct: 70 IAWASVLTALNQ-----------------------ANLSG-------KTLSVFSSVGSSS 99
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G RP+ + ACA LG++D GR +H + + D ++ ++++DMYAKCG + +A
Sbjct: 100 GLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSA 159
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF 309
+VFDS+ ++ ++T+++SG A + A+ELF
Sbjct: 160 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 44/196 (22%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L CA L + +HA++ + GI L ++++Y KCG A VFD MP+RD
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA 346
A+ S+++ L + S
Sbjct: 70 IAWASVLTALNQANLSGKT----------------------------------------- 88
Query: 347 GMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET-VESLVERSLDHEGVHVLL 405
L V + PD++V AL+ AC G +D G++ +V + E V L
Sbjct: 89 --LSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSL 146
Query: 406 SNIYASTEQWNGVEKV 421
++YA N + V
Sbjct: 147 VDMYAKCGLLNSAKAV 162
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 159/534 (29%), Positives = 255/534 (47%), Gaps = 94/534 (17%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ KQIQ+ L L D + K++ F S L ++F +NT++
Sbjct: 19 LRVFKQIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVILHSIRSVLSSFSYNTLL 78
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+A ++P +Y+ + + F P+ +TF + +AC S + G H V ++G+
Sbjct: 79 SSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFY 138
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+V N L+H Y C A K+FD RDV+SWT +I G+ ++G A F KM
Sbjct: 139 DDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKM 198
Query: 181 P-EKNAVSW-----------------------------------SAMINGYVQVDLFKEA 204
E N ++ +A+I+ YV+ + +A
Sbjct: 199 DVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDA 258
Query: 205 L-------------------------------EHFNYMQL-CGFRPNHAGIVGALTACAF 232
+ E F+ MQ G +P+ + L+ACA
Sbjct: 259 MTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACAS 318
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGA+D GRW+H YV GI+ D +GTAI+DMYAKCG IETA +F+ + ++VF + +L
Sbjct: 319 LGAVDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNAL 378
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN-------------------------ESMSEIY 327
+ GLA H ++ F M G PN + + Y
Sbjct: 379 LGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREY 438
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV-DLGKE 386
+ P ++HYGCL+DL RAG+L+ A ++++ MP++PD + GA+L+AC+ G + +L KE
Sbjct: 439 NLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSACKSRGTLMELPKE 498
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
++S +E + GV+VLLSNI+A+ +W+ V ++RR M+ + KVPG S IE
Sbjct: 499 ILDSFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISKVPGSSSIE 552
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 21/233 (9%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLING----YAKSGQISIARQMFDKMPEK- 183
LL L + C+ + +++ ++RD++ IN KS + +
Sbjct: 9 LLELISRCSSLRVFKQIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVILHSIRSV 68
Query: 184 -NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ S++ +++ Y D + + + GF P+ AC + +G+ I
Sbjct: 69 LSSFSYNTLLSSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQI 128
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H V + G DI + +++ Y CG AC VFD MP RDV ++T +I+G
Sbjct: 129 HGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLY 188
Query: 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
A++ F +M +EP + Y C + GR G L K +
Sbjct: 189 KEALDTFSKMD---------------VEPNLATYVCALVSSGRVGCLSLGKGI 226
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 211/383 (55%), Gaps = 40/383 (10%)
Query: 86 PNNYTFSFILRACA------DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
P+ +F+ +L A A D LF + QV W N ++ +Y +
Sbjct: 146 PDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQV---SW-------NAMVVVYVNAGDV 195
Query: 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
AR++FD RD SW+ LI GY K G + AR++FD+MP KN V+W+AMINGY Q
Sbjct: 196 SSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSG 255
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
+ KE+L F M+ G P+ A +VG ++A + +G+ + W+ +YVD+ IE + + T
Sbjct: 256 VPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLT 315
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
A++DM+AKCG ++ A S F + D + YT+LISGLA H + A+++F RMQ + V P
Sbjct: 316 ALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWP 375
Query: 320 N------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
+ E+M + YG+E HY C+VD+LGRAG LE A ++
Sbjct: 376 DPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEM 435
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
V+ MP+ P LGALL+AC+ HG+V++ + L E + G +++LSNIYA EQW
Sbjct: 436 VQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQW 495
Query: 416 NGVEKVRRGMEDNEVRKVPGCSL 438
E++R M K PG S+
Sbjct: 496 EEAERIRSVMRTRVPFKQPGSSM 518
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 134/335 (40%), Gaps = 64/335 (19%)
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLLHLYATCNCMDPARK 144
P++++ F L A A L +G HA +RL V N L+ LYA C+ + A
Sbjct: 79 PDHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLPVANALVDLYAKCDDLPAAHT 138
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
D +S+ SL+ +A+ + A +F MP + VSW+AM+ YV A
Sbjct: 139 ALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVSSA 198
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
F+ M D W + +I
Sbjct: 199 RRVFDQMP----------------------TRDSTSW-----------------SVLIVG 219
Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM- 323
Y KCG + +A VFD MP +++ A+T++I+G A ++ LF M+ G+ P+ +
Sbjct: 220 YCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATM 279
Query: 324 ------------SEIYG----------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
+E+ G IE + LVD+ + G ++ A RE+
Sbjct: 280 VGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREI-A 338
Query: 362 EPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+PD Y AL++ HG L + E + +S+
Sbjct: 339 QPDAYPYTALISGLAAHGHAKLALQVFERMQAQSV 373
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 35/258 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I+G+C G + +F + + W MI G+A+ P ++ AL+++M +
Sbjct: 217 IVGYCK---CGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIE 273
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T ++ A + + + V + E D VL L+ ++A C +D A
Sbjct: 274 PDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSA 333
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F D +T+LI+G A G +A Q+F++M ++ W
Sbjct: 334 FREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSV--W----------------- 374
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDM 264
P+ VG LTAC+ G +D+G + A V G+E ++DM
Sbjct: 375 ------------PDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDM 422
Query: 265 YAKCGCIETACSVFDSMP 282
+ G +E A + +MP
Sbjct: 423 LGRAGRLEEAFEMVQTMP 440
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 248/468 (52%), Gaps = 28/468 (5%)
Query: 45 FVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSC 103
F L R WN+MI G + +A + +L+ L P+ ++ + L ACA+
Sbjct: 196 FELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEK 255
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS--VNRDVISWTSLI 161
L G H ++R +++ V N L+ +YA ++ AR++ + S + DVI++T+L+
Sbjct: 256 LSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALL 315
Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
NGY K G I+ ARQ+F+ + + + V+W+AMI GYVQ L +A+E F M G RPN
Sbjct: 316 NGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375
Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
+ L+A + + +L+ G+ IHA R+G L +G A+ MYAK G I A VF+ +
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLL 435
Query: 282 -PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------------- 320
NRD ++TS+I LA H AIELF +M G+ P+
Sbjct: 436 RQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQG 495
Query: 321 ----ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376
+ M ++ I+P + HY C+VDL GRAG+L+ A K V MP+EPD G+LL++C+
Sbjct: 496 RSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCK 555
Query: 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436
V+ +VDL K E L+ ++ G + L+N+Y+S +W+ K+R+ M+ V+K G
Sbjct: 556 VYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGL 615
Query: 437 SLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
S +++ F + + +EI ++ I K +K + F D V
Sbjct: 616 SWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESV 663
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 196/399 (49%), Gaps = 19/399 (4%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +++F + R + W T+I G+ + A ++ M++ LP +T + +L
Sbjct: 55 GKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVL 114
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+CA T +G H+ V++LG + V N LL++YA + A+ +FD R+
Sbjct: 115 ASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTS 174
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF-NYMQLC 214
SW ++I+ + G++ +A F+ + E++ VSW++MI G Q EAL+ F + ++
Sbjct: 175 SWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDT 234
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ + AL+ACA L L G+ IH Y+ R + +G A+I MYAK G +E A
Sbjct: 235 SLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIA 294
Query: 275 CSVFDS--MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332
+ + + + DV A+T+L++G A ++F ++ VV +M Y ++ G
Sbjct: 295 RRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGY-VQNG 353
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
+ + +E K +V E P P+++ L A+L+A ++ GK+ S +
Sbjct: 354 LNN-----------DAIEVFKTMVSEGP-RPNSFTLAAMLSASSSVTSLNHGKQIHASAI 401
Query: 393 ERSLD--HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
RS + V L+ +YA NG KV + N
Sbjct: 402 -RSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNR 439
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 160/318 (50%), Gaps = 16/318 (5%)
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
+++LG +++N L++LYA A LF+ + SW ++++GYAK G++ A
Sbjct: 1 MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
Q+FD +P +++VSW+ +I GY Q+ F++A++ F M P + L +CA
Sbjct: 61 HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G+ G+ +H++V + G+ + + ++++MYAK G ++ A VFD M R+ ++ ++I
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
S N + A+ F + +V SM G +G + L+
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMI------AGCNQHGFDNE------ALQFFS 228
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG-VHVLLSNIYAST 412
++++ ++PD + L + L+AC + GK+ +V D G V L ++YA +
Sbjct: 229 SILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKS 288
Query: 413 EQWNGVEKVRRGMEDNEV 430
GVE RR +E + +
Sbjct: 289 ---GGVEIARRIIEQSGI 303
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 147/334 (44%), Gaps = 59/334 (17%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+GD++ ++F L+ W MI G+ + A ++K M+ PN++T + +
Sbjct: 321 LGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAM 380
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRD 153
L A + + L G HA IR G V N L +YA ++ ARK+F+ + NRD
Sbjct: 381 LSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRD 440
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
+SWTS+I A+ G L +EA+E F M
Sbjct: 441 TVSWTSMIMALAQHG-------------------------------LGEEAIELFEQMLT 469
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD--RNGIELDIILG--TAIIDMYAKCG 269
G +P+H VG L+AC G ++QGR +Y D +N ++D L ++D++ + G
Sbjct: 470 LGIKPDHITYVGVLSACTHGGLVEQGR---SYFDLMKNVHKIDPTLSHYACMVDLFGRAG 526
Query: 270 CIETACSVFDSMP-NRDVFAYTSLISG---LANHDQSASAIELFMRMQLEGVVPNESMSE 325
++ A ++MP DV A+ SL+S N D + A E + ++ PN S +
Sbjct: 527 LLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIE-----PNNSGA- 580
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
Y L ++ G + A K+ + M
Sbjct: 581 ----------YSALANVYSSCGKWDDAAKIRKLM 604
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 161/530 (30%), Positives = 264/530 (49%), Gaps = 58/530 (10%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+KQI + + +G +DPF+ ++I + S L + ++F + + + WNT+IR
Sbjct: 49 KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108
Query: 62 GFAEKNEPIKAFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+A + P ++ ++ +ML +S P+ +TF F+++A ++ LF G H VI++
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING----------------- 163
S F+LN L+H YA C + ++F RDV+SW S+I
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228
Query: 164 ---------------YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
Y K G + A+++FDKMPEK+ VSW+ M+ GY ++ + A F
Sbjct: 229 ETQNSLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIF 288
Query: 209 NYMQLCGFRPNH-----AGIVGALTACAFLG---------ALDQGRWIHAYVDRNGIELD 254
+ M PN ++ A C L + + G++L+
Sbjct: 289 DAM------PNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLKQGMKLN 342
Query: 255 IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314
L T++IDMY KCG ++ A VF S+ +DVF ++++I+GLA H AI LF +MQ
Sbjct: 343 CHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQE 402
Query: 315 EGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
+ V PN I H G + + GR + V +MP+ P V GALL A
Sbjct: 403 DKVKPNAVT--FTNILCACSHVGLVEE--GRT-FFNQMELVYGKMPMAPAASVWGALLGA 457
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVP 434
C +H +V L ++ L+E + G +VLLSNIYA +W+ V +R+ M D ++K P
Sbjct: 458 CTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEP 517
Query: 435 GCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
GCS IEVDG+V EF+ G+ ++ ++I L I L+++ + + + +
Sbjct: 518 GCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHL 567
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/444 (34%), Positives = 235/444 (52%), Gaps = 26/444 (5%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN MI GF + A +++ M P+ + S +L A D +G+ H VI
Sbjct: 178 WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVI 237
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G FV++ L+ +Y C C +F+ DV + +L+ G +++G + A +
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297
Query: 176 MFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+F + + N VSW++MI Q EALE F MQ+ G +PN I L AC +
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNI 357
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
AL G+ H + RNGI D+ +G+A+IDMYAKCG + + FD MPNR++ ++ SL+
Sbjct: 358 AALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLM 417
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGI 329
+G A H ++ AI +F MQ G P+ +SMS +G+
Sbjct: 418 AGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGV 477
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
E ++HY C+V LLGR+G LE A ++++MP EPD+ V GALL++CRVH VDLG+ +
Sbjct: 478 EARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAK 537
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
+ E + G ++LLSNIYAS W V+ VR M ++K PG S IE+ V +
Sbjct: 538 RVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLL 597
Query: 450 SGERTNVLMEEIVLLLFGIDKHLK 473
+G+ ++ M +I+ L + +K
Sbjct: 598 AGDSSHPQMPQIIEKLAKLTVEMK 621
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 159/325 (48%), Gaps = 25/325 (7%)
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG--LICHAQVIRL 117
I+ F++ N ++ ML +P++ +++ CA S L G + C A V L
Sbjct: 46 IQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGL 105
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G +S VL+ LLH+Y + + AR +FD V++ ++LI+ +A+ G++ +++F
Sbjct: 106 GLDS--VVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELF 163
Query: 178 ----DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
D E N VSW+ MI+G+ + + +A+ F M L G +P+ + L A L
Sbjct: 164 YQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDL 223
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G IH YV + G+ D + +A+IDMY KC C VF+ M DV A +L+
Sbjct: 224 DMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALV 283
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
+GL+ + +A+E+F + + G++ V + ++ + G A
Sbjct: 284 TGLSRNGLVDNALEVFKQFK--------------GMDLNVVSWTSMIASCSQNGKDMEAL 329
Query: 354 KVVREMPIE---PDNYVLGALLNAC 375
++ REM IE P++ + LL AC
Sbjct: 330 ELFREMQIEGVKPNSVTIPCLLPAC 354
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 18/204 (8%)
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
K +S I + +++ F + F+YM G P+ + + CA L AL G+ +
Sbjct: 37 KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H + +G+ LD ++ ++++ MY + ++ A +VFD +P V ++LIS A +
Sbjct: 97 HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156
Query: 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
ELF + + G+E + + ++ R+G A + + M +E
Sbjct: 157 KETKELFYQ------------TRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLE 204
Query: 363 ---PDNYVLGALLNACRVHGDVDL 383
PD + ++L A GD+D+
Sbjct: 205 GLKPDGTSVSSVLPAV---GDLDM 225
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 259/519 (49%), Gaps = 67/519 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS---ASDIGDLSHGYRLFVCLQYRTTFIW- 56
++ + Q+ + SG P V +++ C+ A+ LS+ ++F + +W
Sbjct: 44 LRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWY 103
Query: 57 NTMIRGFAE-------KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109
NT++RG+A + +A ++ +ML P+ YTF +L+ACA G
Sbjct: 104 NTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQ 163
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
H +++G +++VL +LIN YA+ G
Sbjct: 164 AHGVAVKVGAAEHEYVL-------------------------------PTLINMYAECGD 192
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
AR MF ++ + VS++AMI V+ EAL F MQ G + ++ L+A
Sbjct: 193 ARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSA 252
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA LGAL+ GRWIH YV + ++ + + TA+IDMY KCG +E A SVF M +RD A+
Sbjct: 253 CALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAW 312
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
+ +I ANH AI LF M+ +G+ P+ +SM E
Sbjct: 313 SVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMRE 372
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+G+ PG++HYGC+ DLL R+G L+ A + + E+PI+P + LL+AC GD DLGK
Sbjct: 373 -FGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGK 431
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ E ++E H G +V+ SN+ A+T +W + +VR+ M + V KVPGCS IEVD V
Sbjct: 432 QVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRV 491
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EF +G+ + + ++ G+ + LK + + + V
Sbjct: 492 HEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHV 530
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 160/453 (35%), Positives = 240/453 (52%), Gaps = 43/453 (9%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + R+F L R W +MI G + + + +ML F P++ T +L
Sbjct: 309 GRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVL 368
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C+ S L I H V++ G+ES +V N ++++ + M+ ARK+
Sbjct: 369 NGCSH-SGLVEEEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKV---------- 417
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
F++M E++ SW++++ GY + A F LC
Sbjct: 418 ---------------------FNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCD 456
Query: 216 FR--PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
R PN A +V L+ACA LGALDQG WIH Y+D+ GI + TA+IDMYAKCG I+
Sbjct: 457 DRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDC 516
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
A VF+ + RDV ++TS+ISGL+ H A L G +M ++GI P +
Sbjct: 517 ASRVFNGICKRDVLSFTSMISGLSYHGLGKDA--------LRGSSILANMESLWGIAPKI 568
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HYGC +DLLGRAG LE A +VV+ MP+EPD + ALL+A R+H +V+LG++ + + +
Sbjct: 569 EHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQ 628
Query: 394 -RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+S DH G VLLSN+YAS +W V ++R+ M D PGCS IEV+G+V EF +
Sbjct: 629 LKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVAD 688
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
+ + + EI L I K L + + + +V+
Sbjct: 689 QLHPQIVEIRNKLNEILKRLSQIGYSANTMQVS 721
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 207/405 (51%), Gaps = 55/405 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT---TFIWN 57
+ QIKQI + + G + +G +I S IG + + V Q+ + T IWN
Sbjct: 68 LTQIKQIHAQVVTHGLAQNTSLLGPLI----HSYIGCRNLSFARIVFDQFPSLPPTIIWN 123
Query: 58 TMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCLF-VGLICHAQV 114
MI+ +++ ++ L+ QML + YTF+F+ AC+ L G H V
Sbjct: 124 LMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMV 183
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
++ G+ES FV N L+++Y+ +F V+ A+
Sbjct: 184 VKDGYESDIFVGNSLVNMYS----------IFSRMVD---------------------AK 212
Query: 175 QMFDKMPEKNAVSWSAMINGY-VQVDLFKEALEHFNYMQLCG--FRPNHAGIVGALTACA 231
++FD+MP+++ ++W++++ GY ++ + + EAL+ FN M LC +PN A +V L+ACA
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDM-LCHDEVKPNEAVLVSILSACA 271
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
LGALDQG+WIH Y+D+N I L + TA+IDMYAKCG I+ A VFD + RD+ +TS
Sbjct: 272 HLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTS 331
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351
+ISGL+ H A + F M EG P++ + G+ G H G + + E
Sbjct: 332 MISGLSMHGLGAECLWTFSEMLAEGFKPDDIT--LLGVLNGCSHSGLVEE--------EI 381
Query: 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+V + E + YV +++N C V ++ ++ + ER +
Sbjct: 382 VHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDV 426
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 144/285 (50%), Gaps = 36/285 (12%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPI-KAFALYKQMLRSDFL-PNNYTFSFILRACAD 100
R+F + R W ++++G+A + E +A + ML D + PN IL ACA
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAH 272
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
L G W +H+Y +D R L +++ T+L
Sbjct: 273 LGALDQG----------KW----------IHVY-----IDKNRILLSSNIS------TAL 301
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
I+ YAK G+I AR++FD + +++ ++W++MI+G L E L F+ M GF+P+
Sbjct: 302 IDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDD 361
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
++G L C+ G +++ +H V ++G E ++ +G ++I+M + +E A VF+
Sbjct: 362 ITLLGVLNGCSHSGLVEE-EIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQ 420
Query: 281 MPNRDVFAYTSLISGLANH-DQSASAIELFMRMQLEGVV-PNESM 323
M RDVF++TSL+ G A H + +++ F M + V PNE++
Sbjct: 421 MSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAV 465
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKA-FALYKQMLRSDF 84
+I CS + ++F + R F W +++ G+A+ E +A + ML D
Sbjct: 401 VINMCSV--FARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDR 458
Query: 85 L-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143
+ PN +L ACA L G H + ++G + L+ +YA C +D A
Sbjct: 459 VNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCAS 518
Query: 144 KLFDMSVNRDVISWTSLINGYAKSG 168
++F+ RDV+S+TS+I+G + G
Sbjct: 519 RVFNGICKRDVLSFTSMISGLSYHG 543
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 240/464 (51%), Gaps = 33/464 (7%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILR 96
L LF + R WN MI G+A+ +A L++++ +R F F+
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN 290
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
D + ++ E + N ++ Y ++ AR+LFD +R+ S
Sbjct: 291 GMLDEA---------TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W +++ GYA+ G I A+ +FD+MP+++ +SW+AMI+GY Q +EAL F M+ G
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
N + + AL++CA + AL+ G+ +H + + G + I G A++ MY KCG IE A
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL---------------------- 314
VF+ + +D+ ++ ++I+G A H A+ LF M++
Sbjct: 462 VFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFV 521
Query: 315 -EGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
+G+ SM + YGI +HY C++DLLGRAG L+ A +++ MP PD GALL
Sbjct: 522 DKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLG 581
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
A R+HGD +LG++ E + E D+ G++VLLSN+YA++ +W V ++R M D V+KV
Sbjct: 582 ASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKV 641
Query: 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
PG S +E+ F G+ ++ E I L +D LK F
Sbjct: 642 PGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGF 685
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 187/417 (44%), Gaps = 78/417 (18%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+LS LF + + WN M+ GFA+ +A ++ QML + N +++ +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191
Query: 96 RACADTSCLFVGLICHAQVI---RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
A G I A+ + ++ WE + N L+ Y +D AR LFD R
Sbjct: 192 SAYVQN-----GRIEDARRLFDSKMDWEIVSW--NCLMGGYVRKKRLDDARSLFDRMPVR 244
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D ISW +I GYA++G +S AR++F+++P ++ +W+AM++G+VQ + EA F M
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+A I G + + A + RN + ++ YA+CG I+
Sbjct: 305 EKNEVSWNAMIAGYVQSQQIEKAREL---FDQMPSRNTSSWN-----TMVTGYAQCGNID 356
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------S 324
A +FD MP RD ++ ++ISG A QS A+ LF++M+ +G + N S +
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416
Query: 325 EIYGIEPGVQHYGCLVD---------------LLGRAGMLEAA---------KKVVR--- 357
EI +E G Q +G LV + G+ G +E A K +V
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476
Query: 358 ---------------------EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+M I+PD+ L +L+AC G VD G E S+ +
Sbjct: 477 MIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQ 533
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 151/316 (47%), Gaps = 37/316 (11%)
Query: 82 SDFLPNNYTFSFILRA--CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
SD + N S +R C +F G+ + V +Y+ +++G Y + N
Sbjct: 58 SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTV------TYNAMISG----YLSNNKF 107
Query: 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
D ARK+F+ +RD+ISW +++GY K+G +S AR +F++MPEK+ VSW+AM++G+ Q
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
+EA + F+ M + N G L+A G ++ R + + ++ +I+
Sbjct: 168 FVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWN 219
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
++ Y + ++ A S+FD MP RD ++ +I+G A + + A LF + + V
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA 279
Query: 320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+ +V + GML+ A ++ EMP E + A++
Sbjct: 280 ----------------WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQ 322
Query: 380 DVDLGKETVESLVERS 395
++ +E + + R+
Sbjct: 323 QIEKARELFDQMPSRN 338
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 28/263 (10%)
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
V+ D++ W I+ Y + GQ A +F+ M ++ V+++AMI+GY+ + F A + F
Sbjct: 56 VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115
Query: 210 YMQLCGFRPNHAGIVGALTACAFL--GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
M P+ I + ++ G L R + + E D++ A++ +A+
Sbjct: 116 KM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQ 165
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF-MRMQLEGVVPN------ 320
G +E A +FD M ++ ++ L+S + + A LF +M E V N
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225
Query: 321 ------ESMSEIYGIEPGVQHYGCLVDLLGRA--GMLEAAKKVVREMPIEPDNYVLGALL 372
+ ++ P + + G A G+L A+++ E+PI D + A++
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR-DVFAWTAMV 284
Query: 373 NACRVHGDVDLGKETVESLVERS 395
+ +G +D E + E++
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKN 307
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
D ++ DI+ I Y + G E+A SVF+ M R Y ++ISG ++++ A
Sbjct: 52 DSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR 111
Query: 307 ELFMRM----------QLEGVVPNESMSEIYGI-----EPGVQHYGCLVDLLGRAGMLEA 351
++F +M L G V N ++S + E V + ++ + G +E
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEE 171
Query: 352 AKKVVREMPIEPD---NYVLGALLNACRVH 378
A+K+ +M ++ + N +L A + R+
Sbjct: 172 ARKIFDQMLVKNEISWNGLLSAYVQNGRIE 201
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 161/500 (32%), Positives = 245/500 (49%), Gaps = 67/500 (13%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
++S L VS L D +A + G L ++F + R WN++I+ +
Sbjct: 278 LESELFVSNKLIDLYA-----------EFGSLKDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
+P++A L+++M S P+ T + + + +R GW
Sbjct: 327 EQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGW------- 379
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
L D+++ V+ YAK G + AR +F+ +P K+ +
Sbjct: 380 -----------------FLEDITIGNAVVVM------YAKLGLVDSARAVFNWLPNKDVI 416
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCG--FRPNHAGIVGALTACAFLGALDQGRWIHA 244
SW+ +I+GY Q EA+E +N M+ G N V L AC+ GAL QG +H
Sbjct: 417 SWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHG 476
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+ +NG+ LD+ +GT++ DMY KCG ++ A S+F +P + + +LI+ H
Sbjct: 477 RLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEK 536
Query: 305 AIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLV 340
A+ LF M EGV P+ E M YGI P ++HYGC+V
Sbjct: 537 AVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMV 596
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DL GRAG LE A ++ MP++PD + GALL+ACRVHG+VDLGK E L E +H G
Sbjct: 597 DLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVG 656
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
HVLLSN+YAS +W GV+++R +RK PG S +EVD V F +G +T+ + EE
Sbjct: 657 YHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEE 716
Query: 461 IVLLLFGIDKHLKSLCFFDD 480
+ L + + LK + + D
Sbjct: 717 MYRELTALHEKLKMVGYVPD 736
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 153/325 (47%), Gaps = 49/325 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
++ K + + L VS + + K++ +C +G+++ F + R + WN M
Sbjct: 67 LQSAKCLHARLVVSNAIQNVCISAKLVNLYCY---LGNVALARYTFDHIHNRDVYAWNLM 123
Query: 60 IRGFAE---KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
I G+ +E I+ F+L+ ML S P+ TF +L+AC + + G H ++
Sbjct: 124 ISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKACRNVT---DGNKIHCLALK 178
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ +V L+HLY + G + AR +
Sbjct: 179 FGFMWDVYVAASLIHLYC-------------------------------RYGAVVNARIL 207
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP-NHAGIVGALTACAFLGA 235
FD+MP ++ SW+AMI+GY Q KEAL + G R + +V L+AC G
Sbjct: 208 FDEMPTRDMGSWNAMISGYCQSGNAKEALTLSD-----GLRAMDSVTVVSLLSACTEAGD 262
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
++G IH+Y ++G+E ++ + +ID+YA+ G ++ VFD M RD+ ++ S+I
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKA 322
Query: 296 LANHDQSASAIELFMRMQLEGVVPN 320
++Q AI LF M+L + P+
Sbjct: 323 YELNEQPLRAILLFQEMRLSRIQPD 347
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 157/486 (32%), Positives = 253/486 (52%), Gaps = 34/486 (6%)
Query: 1 MKQIKQIQSHLTVSGTL-WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ ++KQI H+ VSG L + ++ F ++G L ++F + +N M
Sbjct: 145 LSEVKQIHCHIIVSGCLSLGNYLWNSLVKF--YMELGSLGFAEKVFAIMPQPDVSSFNVM 202
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG- 118
I G+A++ ++A LY +M+ P+ YT +L C S + +G H + R G
Sbjct: 203 IVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGP 262
Query: 119 -WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
+ S + N LL +Y C A++ FD +D+ SW +++ G+ + G + A+ +F
Sbjct: 263 VYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVF 322
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGA 235
D+MP+++ VSW++++ Y + + A+ Y L +P+ +V ++ A G
Sbjct: 323 DQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGE 382
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L GRW+H + R +E D L +A+IDMY KCG IE A VF + +DV +TS+I+G
Sbjct: 383 LSHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITG 442
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEP 331
A H A++LF RMQ E V PN+ M E +G P
Sbjct: 443 FAFHGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHP 502
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVR-EMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
+HYG LVDLL RAG LE AK +V+ +MP+ P + G++L+ACR D++ + +
Sbjct: 503 ETEHYGSLVDLLCRAGRLEEAKDIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSE 562
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG-CSLIEVDGVVCEFV 449
L++ + EG +VLLSNIYA+ +W +K R ME V+K G S++ V+G V FV
Sbjct: 563 LLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMESRGVKKTAGYSSVVGVEG-VHSFV 621
Query: 450 SGERTN 455
+ E+ N
Sbjct: 622 AAEKQN 627
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/396 (22%), Positives = 163/396 (41%), Gaps = 69/396 (17%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWNTMIR 61
Q KQ+ + + + F + ++I F + + +L LF+ F++NTMI
Sbjct: 48 QFKQVLAQIMRFNLIGVTFPMSRLIFFSAITYPENLDLAKLLFLDFTPNPNVFVYNTMIS 107
Query: 62 GFAE-KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ KNE F LY M+R P+ TF +++A +S L H +I G
Sbjct: 108 AVSSSKNE---CFGLYSSMIRYRVSPDRQTFLHLMKA---SSFLSEVKQIHCHIIVSGCL 161
Query: 121 SY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
S +++ N L+ Y + A K+F + DV S+ +I GYAK G
Sbjct: 162 SLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQG----------- 210
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
EALE + M G P+ ++G L C L + G
Sbjct: 211 --------------------FGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLG 250
Query: 240 RWIHAYVDRNG--IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+ +H +++R G ++IL A++DMY KC A FD++ +D+ ++ +++ G
Sbjct: 251 KGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFV 310
Query: 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
+A +F +M +V S+ Y + GC ++ VR
Sbjct: 311 RLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKK------GC-------------DQRAVR 351
Query: 358 EM--------PIEPDNYVLGALLNACRVHGDVDLGK 385
E+ ++PD + +L++ +G++ G+
Sbjct: 352 ELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGR 387
>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
Length = 471
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 154/418 (36%), Positives = 224/418 (53%), Gaps = 29/418 (6%)
Query: 72 AFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGW--ESYDFVLNG 128
A AL+ +MLR PN + + +LRA V I H+ + G+ YD +
Sbjct: 42 ALALFLRMLRHGRPSPNQFVYPLVLRAACAVDVRIVRSI-HSHACKSGFCGYEYDVIRTS 100
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
LL Y+ M ARKLFD R V+SWT+L++GYA++G+I A +F++M E++ +W
Sbjct: 101 LLDCYSRHAMMADARKLFDGLTERSVVSWTALVSGYARAGKIGDAIMLFERMTERDVAAW 160
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+A+I G Q LF EA+ F M G RPN I L+AC LG L G+ IH R
Sbjct: 161 NAIITGCSQNRLFAEAVGIFGRMVGTGLRPNATTISCVLSACGHLGMLKIGKLIHCCAWR 220
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
+ + +IDMY KCG +E A +F + +R + A+ SLI+ LA H S AI +
Sbjct: 221 TCVGFGSSVLNGLIDMYGKCGNLEGATWIFYEVSDRSLTAWNSLINCLALHGHSKCAISV 280
Query: 309 FMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLG 344
F M+ EGV P+ E M +GIEP ++HYGC+++LLG
Sbjct: 281 FNEMRGEGVEPDVITFVGLLNACTHGGFVDEGIKYFELMQHEHGIEPEIEHYGCIINLLG 340
Query: 345 RAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404
RAG + A V+ M IE D + G+LLNACRVH +V+L + + L+E ++ V+
Sbjct: 341 RAGRFQDALNVISNMRIESDEVIWGSLLNACRVHRNVELAELAIRKLLELDPNNANYVVM 400
Query: 405 LSNIYASTEQWNGVEKVRRGMEDNEV-RKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
L+N+Y+ W V K R+ ME+ + +K+PGCS IEVD + F SG+ + E I
Sbjct: 401 LANVYSEGGLWEEVRKARKFMEEENIGKKLPGCSWIEVDRKIHRFYSGDDAHSESENI 458
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ G+ A IGD LF + R WN +I G ++ +A ++ +M+ +
Sbjct: 133 VSGYARAGKIGD---AIMLFERMTERDVAAWNAIITGCSQNRLFAEAVGIFGRMVGTGLR 189
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
PN T S +L AC L +G + H R VLNGL+ +Y C ++ A +
Sbjct: 190 PNATTISCVLSACGHLGMLKIGKLIHCCAWRTCVGFGSSVLNGLIDMYGKCGNLEGATWI 249
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLF 201
F +R + +W SLIN A G A +F++M E + +++ ++N
Sbjct: 250 FYEVSDRSLTAWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVITFVGLLNACTHGGFV 309
Query: 202 KEALEHFNYMQ 212
E +++F MQ
Sbjct: 310 DEGIKYFELMQ 320
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 127/340 (37%), Gaps = 91/340 (26%)
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISI---------ARQMFDKM-----PEKNAVSW 188
R LFD + + +V ++++++ YA + + A +F +M P N +
Sbjct: 3 RHLFDATPHPNVFLYSAILSAYASAAAAASPSSYAHARDALALFLRMLRHGRPSPNQFVY 62
Query: 189 SAMINGYVQVD--LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL--DQGRWIHA 244
++ VD + + H CG+ + I +L C A+ D +
Sbjct: 63 PLVLRAACAVDVRIVRSIHSHACKSGFCGY--EYDVIRTSLLDCYSRHAMMADARKLFDG 120
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
+R+ ++ TA++ YA+ G I A +F+ M RDV A+ ++I+G + + A
Sbjct: 121 LTERS-----VVSWTALVSGYARAGKIGDAIMLFERMTERDVAAWNAIITGCSQNRLFAE 175
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC-------------------------L 339
A+ +F RM G+ PN + I + H G L
Sbjct: 176 AVGIFGRMVGTGLRPNATT--ISCVLSACGHLGMLKIGKLIHCCAWRTCVGFGSSVLNGL 233
Query: 340 VDLLGRAGMLEAAKKVVREMP----------------------------------IEPDN 365
+D+ G+ G LE A + E+ +EPD
Sbjct: 234 IDMYGKCGNLEGATWIFYEVSDRSLTAWNSLINCLALHGHSKCAISVFNEMRGEGVEPDV 293
Query: 366 YVLGALLNACRVHGDVDLGKETVESL-----VERSLDHEG 400
LLNAC G VD G + E + +E ++H G
Sbjct: 294 ITFVGLLNACTHGGFVDEGIKYFELMQHEHGIEPEIEHYG 333
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 155/490 (31%), Positives = 253/490 (51%), Gaps = 38/490 (7%)
Query: 14 SGTLWDPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKA 72
S T WD + ++ G+ G +S LF + R WN M+ G+A + + ++A
Sbjct: 187 SRTEWDAISWNALMSGYV---QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243
Query: 73 FALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV-LNGLLH 131
L+ D +T++ ++ A G++ A+ + + V N ++
Sbjct: 244 RRLFDAAPVRDV----FTWTAVVSGYAQN-----GMLEEARRVFDAMPERNAVSWNAMVA 294
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
Y MD A++LF+M R+V SW +++ GYA++G + A+ +FD MP+K+AVSW+AM
Sbjct: 295 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAM 354
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
+ Y Q +E L+ F M CG N + L+ CA + AL+ G +H + R G
Sbjct: 355 LAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGY 414
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+ +G A++ MY KCG +E A + F+ M RDV ++ ++I+G A H A+E+F
Sbjct: 415 GVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 474
Query: 312 MQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ P++ SM +G+ +HY C++DLLGRAG
Sbjct: 475 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
L A ++++MP EPD+ + GALL A R+H + +LG+ E + E ++ G++VLLSN
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
IYAS+ +W K+R ME+ V+KVPG S IEV V F +G+ + E+I L
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 654
Query: 468 IDKHLKSLCF 477
+D +K +
Sbjct: 655 LDMRMKKAGY 664
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 161/385 (41%), Gaps = 90/385 (23%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ RLF + R+T +N M+ G++ A +L++ + R P+NY+++ +L
Sbjct: 52 GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDNYSYNTLL 107
Query: 96 RACADTSCLF------------------VGLICHAQ--VIRLGWESYDFV-------LNG 128
A A +S L V + HA ++ L +D NG
Sbjct: 108 HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
+L Y ++ AR LF+ D ISW +L++GY + G++S AR++FD+MP ++ VSW
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSW 227
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+ M++GY + EA F+ +
Sbjct: 228 NIMVSGYARRGDMVEARRLFDAAPV----------------------------------- 252
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
D+ TA++ YA+ G +E A VFD+MP R+ ++ ++++ A EL
Sbjct: 253 ----RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 308
Query: 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
F M V +M Y +AGMLE AK V MP + D
Sbjct: 309 FNMMPCRNVASWNTMLTGY----------------AQAGMLEEAKAVFDTMP-QKDAVSW 351
Query: 369 GALLNACRVHGDVDLGKETVESLVE 393
A+L A G +ET++ +E
Sbjct: 352 AAMLAAYSQGG---CSEETLQLFIE 373
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 109/258 (42%), Gaps = 24/258 (9%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+VI I + ++G+++ A ++F MP ++ +++AM+ GY A F +
Sbjct: 37 EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
RP++ L A A +L R + D + D + +I +A G +
Sbjct: 97 ----RPDNYSYNTLLHALAVSSSLADARGL---FDEMPVR-DSVTYNVMISSHANHGLVS 148
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF-MRMQLEGVVPNESMS------- 324
A FD P +D ++ +++ + + A LF R + + + N MS
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGK 208
Query: 325 -----EIYGIEPG--VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
E++ PG V + +V R G + A+++ P+ D + A+++
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-DVFTWTAVVSGYAQ 267
Query: 378 HGDVDLGKETVESLVERS 395
+G ++ + +++ ER+
Sbjct: 268 NGMLEEARRVFDAMPERN 285
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 171/506 (33%), Positives = 256/506 (50%), Gaps = 62/506 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGK--IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNT 58
++ + ++ H +G + D F VG I + I D LF L R WN
Sbjct: 540 LEWVNEVHKHAVETGLISD-FRVGSAFIHMYIRCGSIDD---ARLLFDKLSVRHVTTWNA 595
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
MI G A++ +A +L+ QM R F+P+ TF IL A D
Sbjct: 596 MIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDE----------------- 638
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
E+ ++V +H +AT D L D+ V +L++ Y+K G + A+Q+FD
Sbjct: 639 -EALEWVKE--VHSHAT----DAG--LVDLRVG------NALVHTYSKCGNVKYAKQVFD 683
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
M E+N +W+ MI G Q +A HF M G P+ V L+ACA GAL+
Sbjct: 684 DMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEW 743
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+ +H + G+ D+ +G A++ MYAKCG I+ A SVFD M RDVF++T +I GLA
Sbjct: 744 VKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQ 803
Query: 299 HDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQ 334
H + A++ F++M+ EG PN SM++ YGIEP ++
Sbjct: 804 HGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTME 863
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HY C+VDLLGRAG+LE A+ + MPIEPD+ GALL AC +G++++ + + ++
Sbjct: 864 HYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKL 923
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+VLLSNIYA+T +W VR M+ +RK PG S IEVD + FV G+ +
Sbjct: 924 KPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTS 983
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDD 480
+ +EI L + + LK+ + D
Sbjct: 984 HPESKEIYAQLNDLIERLKAKGYVPD 1009
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 141/285 (49%), Gaps = 31/285 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L ++F L + +IW TMI G+AE A +Y +M + PN T+ IL
Sbjct: 167 GRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSIL 226
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+AC L G HA +I+ G++S V L+++Y C ++ A+ +FD V R+VI
Sbjct: 227 KACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVI 286
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWT +I G A G+ +EA F MQ G
Sbjct: 287 SWTVMIGGLAHYGR-------------------------------GQEAFHLFLQMQREG 315
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
F PN V L A A GAL+ + +H++ G+ LD+ +G A++ MYAK G I+ A
Sbjct: 316 FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDAR 375
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
VFD M RD+F++T +I GLA H + A LF++MQ G +PN
Sbjct: 376 VVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPN 420
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 146/324 (45%), Gaps = 35/324 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K K+I +H+ SG D ++ G + +F + R W MI
Sbjct: 235 LKWGKKIHAHIIQSGFQSDVRVETALVNM--YVKCGSIEDAQLIFDKMVERNVISWTVMI 292
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G A +AF L+ QM R F+PN+YT+ IL A A L H+ + G
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V N L+H+YA KSG I AR +FD M
Sbjct: 353 LDLRVGNALVHMYA-------------------------------KSGSIDDARVVFDGM 381
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF--LGALDQ 238
E++ SW+ MI G Q +EA F MQ G PN + L A A AL+
Sbjct: 382 TERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEW 441
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+ +H + + G D+ +G A+I MYAKCG I+ A VFD M +RDV ++ +++ GLA
Sbjct: 442 VKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQ 501
Query: 299 HDQSASAIELFMRMQLEGVVPNES 322
+ A +F++MQ EG+VP+ +
Sbjct: 502 NGCGHEAFTVFLQMQQEGLVPDST 525
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 162/347 (46%), Gaps = 50/347 (14%)
Query: 57 NTMIRGFAEKNEPI----KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
N + G AE+ + A A+ K ++ +++++ IL+ C + + H
Sbjct: 83 NASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHV 142
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
+I+ G E +V N LL +Y C + AR++FD + +++ WT++I GYA+ G
Sbjct: 143 CIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAED 202
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
A +++DKM ++ CG +PN + L AC
Sbjct: 203 AMRVYDKMRQE------------------------------CG-QPNEITYLSILKACCC 231
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
L G+ IHA++ ++G + D+ + TA+++MY KCG IE A +FD M R+V ++T +
Sbjct: 232 PVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVM 291
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
I GLA++ + A LF++MQ EG +PN Y +++ AG LE
Sbjct: 292 IGGLAHYGRGQEAFHLFLQMQREGFIPNSYT------------YVSILNANASAGALEWV 339
Query: 353 KKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
K+V + D V AL++ G +D + + + ER +
Sbjct: 340 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDI 386
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 175/404 (43%), Gaps = 57/404 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ +K++ SH +G D ++ + S G + +F + R F W MI
Sbjct: 336 LEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS--GSIDDARVVFDGMTERDIFSWTVMI 393
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA--DTSCLFVGLICHAQVIRLG 118
G A+ +AF+L+ QM R+ LPN T+ IL A A TS L + H G
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAG 453
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ S + N L+H+YA C +D AR +FD +RDVISW +++ G A++G
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNG---------- 503
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
EA F MQ G P+ + L AL+
Sbjct: 504 ---------------------CGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEW 542
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+H + G+ D +G+A I MY +CG I+ A +FD + R V + ++I G A
Sbjct: 543 VNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQ 602
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
A+ LF++MQ EG +P+ + +++L A + E A + V+E
Sbjct: 603 QRCGREALSLFLQMQREGFIPDAT---------------TFINILS-ANVDEEALEWVKE 646
Query: 359 MPIEP------DNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
+ D V AL++ G+V K+ + +VER++
Sbjct: 647 VHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNV 690
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 161/379 (42%), Gaps = 59/379 (15%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R WN M+ G A+ +AF ++ QM + +P++ T+ +L T L
Sbjct: 487 RDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEV 546
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQI 170
H + G S V + +H+Y C G I
Sbjct: 547 HKHAVETGLISDFRVGSAFIHMYIRC-------------------------------GSI 575
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
AR +FDK+ ++ +W+AMI G Q +EAL F MQ GF P+ + L+A
Sbjct: 576 DDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSAN 635
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
AL+ + +H++ G+ +D+ +G A++ Y+KCG ++ A VFD M R+V +T
Sbjct: 636 VDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWT 694
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350
+I GLA H A F++M EG+VP+ + Y ++ G LE
Sbjct: 695 MMIGGLAQHGCGHDAFSHFLQMLREGIVPDATT------------YVSILSACASTGALE 742
Query: 351 AAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
K+V + D V AL++ G +D + + +VER +
Sbjct: 743 WVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVER------------D 790
Query: 408 IYASTEQWNGVEKVRRGME 426
+++ T G+ + RG+E
Sbjct: 791 VFSWTVMIGGLAQHGRGLE 809
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/479 (30%), Positives = 257/479 (53%), Gaps = 33/479 (6%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQY--RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD 83
I+G+C + G++ LF ++ + T WN+MI G+A+ +A ++++ +L +
Sbjct: 215 IVGYC---ENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEE 271
Query: 84 FL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
+ +++T +L ACAD + L G HAQ + G FV L+ +Y+ C + A
Sbjct: 272 GIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAA 331
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQV 198
+ FD RD +W LI+GYA Q+ + + KM E N +W+ +I+G+V+
Sbjct: 332 QLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVEN 391
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
+ AL F MQ RP+ + L ACA L + +G+ +HA+ R G ELD+ +G
Sbjct: 392 GHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIG 451
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
A++DMYAKCG I+ A V++ + N ++ + ++++ A H I LF M G
Sbjct: 452 AALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFR 511
Query: 319 PNE-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
P+ + Y + P ++HY C+VDLL RAG L+ A ++
Sbjct: 512 PDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYEL 571
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415
V+++P +PD+ + GALL C + G+V+LG+ ESL+E ++ G +VLL+N+YA +W
Sbjct: 572 VKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRW 631
Query: 416 NGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
+ +++ R+ ++D + K PGCS IE + F+S ++++ E+I L ++ H+++
Sbjct: 632 HDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMRT 690
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 174/388 (44%), Gaps = 38/388 (9%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ +H +G F K++ G L +FV + R + W ++
Sbjct: 79 KQVHAHTLKTGFHGHEFVETKLLQM--YGRFGCLDDANLVFVKMPQRNLYSWTAILSVHV 136
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +A +L++++ D + F +L+ C L +G H VI+
Sbjct: 137 DHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIK-------- 188
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--E 182
C M A K+F ++V+S+ ++I GY ++G + A+++FD+M
Sbjct: 189 ----------RCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVG 238
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHF-NYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
K+ +SW++MI+GY LF EAL F + + G + + L ACA + +L +G+
Sbjct: 239 KDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKE 298
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
+HA G+ + +G A+++MY+KC ++ A FD + RD + LISG A +Q
Sbjct: 299 VHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQ 358
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-- 359
+ L +M+ + G EP V + ++ G E A ++ EM
Sbjct: 359 LENIQNLIQKMKGD------------GFEPNVYTWNGIISGHVENGHNELALRLFTEMQT 406
Query: 360 -PIEPDNYVLGALLNACRVHGDVDLGKE 386
+ PD Y +G +L AC + GK+
Sbjct: 407 SSLRPDIYTVGIILPACARLATIARGKQ 434
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 120/307 (39%), Gaps = 62/307 (20%)
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T++ +L +C L +G HA ++ G+ ++FV LL +Y C+D A
Sbjct: 64 TYASLLESC---RTLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDAN------ 114
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+F KMP++N SW+A+++ +V F+EAL F
Sbjct: 115 -------------------------LVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFE 149
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
+QL L C L L+ GR +H V + +C
Sbjct: 150 KLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIK------------------RCA 191
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329
+ +A +F ++V +Y ++I G + A ELF +M+L G S I G
Sbjct: 192 DMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISG- 250
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
D L L + ++ E IE D++ LG++L AC + GKE
Sbjct: 251 ---------YADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHA 301
Query: 390 SLVERSL 396
V R L
Sbjct: 302 QAVVRGL 308
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266
H ++ L + + + L +C L+ G+ +HA+ + G + T ++ MY
Sbjct: 49 HHTHLSLLDKQIDSSTYASLLESCR---TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYG 105
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+ GC++ A VF MP R+++++T+++S +H A+ LF ++QL+ +
Sbjct: 106 RFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDI 156
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 154/486 (31%), Positives = 256/486 (52%), Gaps = 34/486 (6%)
Query: 1 MKQIKQIQSHLTVSGTL-WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ ++KQI H+ VSG L + ++ F ++G+ ++F + + +N M
Sbjct: 146 LSEVKQIHCHIIVSGCLSLGNYLWNSLVKF--YMELGNFGVAEKVFARMPHPDVSSFNVM 203
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG- 118
I G+A++ ++A LY +M+ P+ YT +L C S + +G H + R G
Sbjct: 204 IVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGP 263
Query: 119 -WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
+ S + N LL +Y C A++ FD +D+ SW +++ G+ + G + A+ +F
Sbjct: 264 VYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVF 323
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGA 235
D+MP+++ VSW++++ GY + + + Y +P+ +V ++ A G
Sbjct: 324 DQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGE 383
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L GRW+H V R ++ D L +A+IDMY KCG IE A VF + +DV +TS+I+G
Sbjct: 384 LSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITG 443
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
LA H A++LF RMQ EGV PN M + +G +P
Sbjct: 444 LAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDP 503
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVV-REMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
+HYG LVDLL RAG +E AK +V ++MP+ P + G++L+ACR D++ + +
Sbjct: 504 ETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTE 563
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG-CSLIEVDGVVCEFV 449
L++ + EG +VLLSNIYA+ +W +K R ME+ V+K G S++ V+G + FV
Sbjct: 564 LLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEG-LHRFV 622
Query: 450 SGERTN 455
+ E+ N
Sbjct: 623 AAEKQN 628
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 164/395 (41%), Gaps = 67/395 (16%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWNTMIR 61
Q KQ+ + + + D F + ++I F + + +L LF+ F++NTMI
Sbjct: 49 QFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMIS 108
Query: 62 GFAE-KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ KNE F LY M+R P+ TF ++++A +S L H +I G
Sbjct: 109 AVSSSKNE---CFGLYSSMIRHRVSPDRQTFLYLMKA---SSFLSEVKQIHCHIIVSG-- 160
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
C+ L W SL+ Y + G +A ++F +M
Sbjct: 161 -----------------CLSLGNYL-----------WNSLVKFYMELGNFGVAEKVFARM 192
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P + S++ MI GY + EAL+ + M G P+ ++ L C L + G+
Sbjct: 193 PHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGK 252
Query: 241 WIHAYVDRNG--IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+H +++R G ++IL A++DMY KC A FD+M +D+ ++ +++ G
Sbjct: 253 GVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVR 312
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
+A +F +M P + + G GC ++ VRE
Sbjct: 313 LGDMEAAQAVFDQM------PKRDLVSWNSLLFGYSKKGC-------------DQRTVRE 353
Query: 359 M--------PIEPDNYVLGALLNACRVHGDVDLGK 385
+ ++PD + +L++ +G++ G+
Sbjct: 354 LFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGR 388
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 158/528 (29%), Positives = 266/528 (50%), Gaps = 48/528 (9%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ QIK+I S+ +GT D F +I + + G ++ ++F ++++ WN M+
Sbjct: 275 LPQIKEIHSYAIRNGTFADAFVCNALID--TYAKCGSMNDAVKVFNVMEFKDVVSWNAMV 332
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+ + AF L++ M + + + T+S ++ A C L Q+I G E
Sbjct: 333 TGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSE 392
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS----------------WTSLINGY 164
+ LL A+ + ++ S+ + ++S + +LI+ Y
Sbjct: 393 PNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMY 452
Query: 165 AKSGQISIARQMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYM--QLCGFRPNH 220
+K AR +FD +P E+N V+W+ MI GY Q +AL+ F+ M + PN
Sbjct: 453 SKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNA 512
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDI-ILGTAIIDMYAKCGCIETACSVF 278
I L ACA L AL G+ IHAYV R+ E + + +IDMY+KCG ++TA +VF
Sbjct: 513 YTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVF 572
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---------------- 322
DSMP R+ ++TS++SG H + A+++F +MQ G VP++
Sbjct: 573 DSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVD 632
Query: 323 --------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
M Y + +HY C++DLL R G L+ A K ++EMP+EP + ALL+A
Sbjct: 633 QGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692
Query: 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVP 434
CRVH +V+L + + LV +++G + L+SNIYA+ +W V ++R+ M+ + ++K P
Sbjct: 693 CRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRP 752
Query: 435 GCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN 482
GCS ++ F G+R++ L EI LL + +K + + + N
Sbjct: 753 GCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETN 800
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 159/337 (47%), Gaps = 43/337 (12%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN ++R ++ +A + +MLR+ P+++T + L+AC + G H +
Sbjct: 117 WNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLIC 176
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
G+ES FV N L+ +Y+ C ++ A +FD I R+
Sbjct: 177 CNGFESNVFVCNALVAMYSRCGSLEDASLVFD-----------------------EITRK 213
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL------CGFRPNHAGIVGALTA 229
D + +SW++++ +V+ + ALE F+ M + R + IV L A
Sbjct: 214 GID-----DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPA 268
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA L AL Q + IH+Y RNG D + A+ID YAKCG + A VF+ M +DV ++
Sbjct: 269 CASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSW 328
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349
++++G +A ELF M+ E +P + ++ + G GC + L
Sbjct: 329 NAMVTGYTQSGNFGAAFELFENMRKEN-IPLDVIT-WSAVIAGYAQRGCSQE------AL 380
Query: 350 EAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+A ++++ + EP++ + +LL+AC G + G E
Sbjct: 381 DAFQQMILDGS-EPNSVTIISLLSACASLGALSQGME 416
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 3/160 (1%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T ++ Y G A + +++ AV W+ ++ +++ A+ M G +
Sbjct: 87 TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+H + AL AC L + GR +H + NG E ++ + A++ MY++CG +E A V
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206
Query: 278 FDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQL 314
FD + + DV ++ S+++ +A+ELF M +
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSM 246
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 152/457 (33%), Positives = 238/457 (52%), Gaps = 28/457 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN M+ GF +A +++ ML F P+ T S +L A + VG H VI
Sbjct: 208 WNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVI 267
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G S FV++ +L +Y C C+ ++FD ++ S + + G +++G + A +
Sbjct: 268 KQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALE 327
Query: 176 MFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231
+F+K ++ N V+W+++I Q EALE F MQ G PN I + AC
Sbjct: 328 VFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACG 387
Query: 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
+ AL G+ IH + R GI D+ +G+A+IDMYAKCG I+ A FD M ++ ++ +
Sbjct: 388 NISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNA 447
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIY 327
++ G A H ++ +E+F M G P+ SMSE +
Sbjct: 448 VMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEH 507
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GIEP ++HY CLV LL R G LE A +++EMP EPD V GALL++CRVH ++ LG+
Sbjct: 508 GIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIA 567
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E L + G ++LLSNIYAS W+ ++R M+ +RK PG S IEV V
Sbjct: 568 AEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHM 627
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
++G++++ M++I+ L ++ +K + N V
Sbjct: 628 LLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFV 664
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 169/346 (48%), Gaps = 19/346 (5%)
Query: 48 LQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
L + T F ++++I FA + + + +P+ + +++CA L G
Sbjct: 64 LPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPG 123
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
HA G+ + V + L H+Y C+ + ARKLFD +RDV+ W+++I GY++
Sbjct: 124 QQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRL 183
Query: 168 GQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
G + A+++F +M E N VSW+ M+ G+ + EA+ F M + GF P+ + +
Sbjct: 184 GLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTV 243
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
L A L + G +H YV + G+ D + +A++DMY KCGC++ VFD +
Sbjct: 244 SCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEE 303
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343
++ + + ++GL+ + +A+E+F + + + +E V + ++
Sbjct: 304 MEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQ------------KMELNVVTWTSIIASC 351
Query: 344 GRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKE 386
+ G A ++ R+M +EP+ + +L+ AC + GKE
Sbjct: 352 SQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKE 397
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 18/245 (7%)
Query: 158 TSLINGYAKSGQISIAR---QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
TSL++ YA + +S + + +P S+S++I+ + + F L F+++
Sbjct: 39 TSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPL 98
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ + A+ +CA L ALD G+ +HA+ +G D I+ +++ MY KC I A
Sbjct: 99 RLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDA 158
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334
+FD MP+RDV ++++I+G + A ELF M+ GV EP +
Sbjct: 159 RKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGV------------EPNLV 206
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHGDVDLGKETVESL 391
+ ++ G G + A + R M ++ PD + +L A DV +G + +
Sbjct: 207 SWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYV 266
Query: 392 VERSL 396
+++ L
Sbjct: 267 IKQGL 271
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 240/464 (51%), Gaps = 33/464 (7%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFILR 96
L LF + R WN MI G+A+ +A L++++ +R F F+
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN 290
Query: 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS 156
D + ++ E + N ++ Y ++ AR+LFD +R+ S
Sbjct: 291 GMLDEA---------TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSS 341
Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
W +++ GYA+ G I A+ +FD+MP+++ +SW+AMI+GY Q +EAL F M+ G
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
N + + AL++CA + AL+ G+ +H + + G + I G A++ MY KCG IE A
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL---------------------- 314
VF+ + +D+ ++ ++I+G A H A+ LF M++
Sbjct: 462 VFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLV 521
Query: 315 -EGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
+G+ SM + YGI +HY C++DLLGRAG L+ A +++ MP PD GALL
Sbjct: 522 DKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLG 581
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
A R+HGD +LG++ E + E D+ G++VLLSN+YA++ +W V ++R M D V+KV
Sbjct: 582 ASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKV 641
Query: 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
PG S +E+ F G+ ++ E I L +D LK F
Sbjct: 642 PGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGF 685
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 185/417 (44%), Gaps = 78/417 (18%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+LS LF + + WN M+ GFA+ +A ++ QML + N +++ +L
Sbjct: 136 GNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLL 191
Query: 96 RACADTSCLFVGLICHAQVI---RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
A G I A+ + ++ WE + N L+ Y +D AR LFD R
Sbjct: 192 SAYVQN-----GRIEDARRLFDSKMDWEIVSW--NCLMGGYVRKKRLDDARSLFDRMPVR 244
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D ISW +I GYA++G +S AR++F+++P ++ +W+AM++G+VQ + EA F M
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+A I G + + A + RN + ++ YA+CG I+
Sbjct: 305 EKNEVSWNAMIAGYVQSQQIEKAREL---FDQMPSRNTSSWN-----TMVTGYAQCGNID 356
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------S 324
A +FD MP RD ++ ++ISG A QS A+ LF++M+ +G + N S +
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416
Query: 325 EIYGIEPGVQHYGCLVD---------------LLGRAGMLEAAKKVVRE----------- 358
EI +E G Q +G LV + G+ G +E A V +
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476
Query: 359 ----------------------MPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
M I+PD+ L +L+AC G VD G E S+ +
Sbjct: 477 MIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQ 533
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 151/316 (47%), Gaps = 37/316 (11%)
Query: 82 SDFLPNNYTFSFILRA--CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139
SD + N S +R C +F G+ + V +Y+ +++G Y + N
Sbjct: 58 SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTV------TYNAMISG----YLSNNKF 107
Query: 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199
D ARK+F+ +RD+ISW +++GY K+G +S AR +F++MPEK+ VSW+AM++G+ Q
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167
Query: 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
+EA + F+ M + N G L+A G ++ R + + ++ +I+
Sbjct: 168 FVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWN 219
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
++ Y + ++ A S+FD MP RD ++ +I+G A + + A LF + + V
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA 279
Query: 320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+ +V + GML+ A ++ EMP E + A++
Sbjct: 280 ----------------WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQ 322
Query: 380 DVDLGKETVESLVERS 395
++ +E + + R+
Sbjct: 323 QIEKARELFDQMPSRN 338
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 28/263 (10%)
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
V+ D++ W I+ Y + GQ A +F+ M ++ V+++AMI+GY+ + F A + F
Sbjct: 56 VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115
Query: 210 YMQLCGFRPNHAGIVGALTACAFL--GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
M P+ I + ++ G L R + + E D++ A++ +A+
Sbjct: 116 KM------PDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQ 165
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF-MRMQLEGVVPN------ 320
G +E A +FD M ++ ++ L+S + + A LF +M E V N
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225
Query: 321 ------ESMSEIYGIEPGVQHYGCLVDLLGRA--GMLEAAKKVVREMPIEPDNYVLGALL 372
+ ++ P + + G A G+L A+++ E+PI D + A++
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR-DVFAWTAMV 284
Query: 373 NACRVHGDVDLGKETVESLVERS 395
+ +G +D E + E++
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKN 307
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
D ++ DI+ I Y + G E+A SVF+ M R Y ++ISG ++++ A
Sbjct: 52 DSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR 111
Query: 307 ELFMRM----------QLEGVVPNESMSEIYGI-----EPGVQHYGCLVDLLGRAGMLEA 351
++F +M L G V N ++S + E V + ++ + G +E
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEE 171
Query: 352 AKKVVREMPIEPD---NYVLGALLNACRVH 378
A+K+ +M ++ + N +L A + R+
Sbjct: 172 ARKIFDQMLVKNEISWNGLLSAYVQNGRIE 201
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 229/472 (48%), Gaps = 54/472 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L ++F + R W T+I G+++ + P A + QMLR + PN +T S ++
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+A A G H ++ G++S V + LL LY MD A+ +FD +R+ +
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW +LI G+A+ ++ALE F M G
Sbjct: 229 SWNALIAGHARRSGT-------------------------------EKALELFQGMLRDG 257
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
FRP+H AC+ G L+QG+W+HAY+ ++G +L G ++DMYAK G I A
Sbjct: 258 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 317
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD + RDV ++ SL++ A H A+ F M+ G+ PNE
Sbjct: 318 KIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+ + GI P HY +VDLLGRAG L A + + EMPIEP + ALL
Sbjct: 378 LLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
NACR+H + +LG E + E D G HV+L NIYAS +WN +VR+ M+++ V+K
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
P CS +E++ + FV+ + + EEI + +K L + D + V
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHV 549
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 134/259 (51%), Gaps = 27/259 (10%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D++ +L+N YAK G + AR++F+KMP+++ V+W+ +I+GY Q D +AL FN M
Sbjct: 94 DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G+ PN + + A A G +H + + G + ++ +G+A++D+Y + G ++
Sbjct: 154 RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYG--- 328
A VFD++ +R+ ++ +LI+G A + A+ELF M +G P+ S + ++G
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273
Query: 329 ----IEPG--VQHY-------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+E G V Y L+D+ ++G + A+K+ + + D
Sbjct: 274 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWN 332
Query: 370 ALLNACRVHGDVDLGKETV 388
+LL A HG GKE V
Sbjct: 333 SLLTAYAQHG---FGKEAV 348
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 23/152 (15%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L C L QGR +HA++ ++ DI++G +++MYAKCG +E A VF+ MP RD
Sbjct: 67 LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIY------------------ 327
+T+LISG + HD+ A+ F +M G PNE ++S +
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186
Query: 328 ----GIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
G + V L+DL R G+++ A+ V
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 229/472 (48%), Gaps = 54/472 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L ++F + R W T+I G+++ + P A + QMLR + PN +T S ++
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+A A G H ++ G++S V + LL LY MD A+ +FD +R+ +
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW +LI G+A+ ++ALE F M G
Sbjct: 229 SWNALIAGHARRSGT-------------------------------EKALELFQGMLRDG 257
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
FRP+H AC+ G L+QG+W+HAY+ ++G +L G ++DMYAK G I A
Sbjct: 258 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 317
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD + RDV ++ SL++ A H A+ F M+ G+ PNE
Sbjct: 318 KIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+ + GI P HY +VDLLGRAG L A + + EMPIEP + ALL
Sbjct: 378 LLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
NACR+H + +LG E + E D G HV+L NIYAS +WN +VR+ M+++ V+K
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
P CS +E++ + FV+ + + EEI + +K L + D + V
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHV 549
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 134/259 (51%), Gaps = 27/259 (10%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D++ +L+N YAK G + AR++F+KMP+++ V+W+ +I+GY Q D +AL FN M
Sbjct: 94 DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G+ PN + + A A G +H + + G + ++ +G+A++D+Y + G ++
Sbjct: 154 RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYG--- 328
A VFD++ +R+ ++ +LI+G A + A+ELF M +G P+ S + ++G
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273
Query: 329 ----IEPG--VQHY-------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+E G V Y L+D+ ++G + A+K+ + + D
Sbjct: 274 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWN 332
Query: 370 ALLNACRVHGDVDLGKETV 388
+LL A HG GKE V
Sbjct: 333 SLLTAYAQHG---FGKEAV 348
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 23/152 (15%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L C L QGR +HA++ ++ DI++G +++MYAKCG +E A VF+ MP RD
Sbjct: 67 LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIY------------------ 327
+T+LISG + HD+ A+ F +M G PNE ++S +
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186
Query: 328 ----GIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
G + V L+DL R G+++ A+ V
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 218
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 244/467 (52%), Gaps = 34/467 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S LF + R WN M+ G+A + + ++A L+ D +T++ ++
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVV 262
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A G++ A+ + + V N ++ Y MD A++LF+M R+V
Sbjct: 263 SGYAQN-----GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SW +++ GYA++G + A+ +FD MP+K+AVSW+AM+ Y Q +E L+ F M C
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G N + L+ CA + AL+ G +H + R G + +G A++ MY KCG +E A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
+ F+ M RDV ++ ++I+G A H A+E+F M+ P++
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM +G+ +HY C++DLLGRAG L A ++++MP EPD+ + GA
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL A R+H + +LG+ E + E ++ G++VLLSNIYAS+ +W K+R ME+ V
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+KVPG S IEV V F +G+ + E+I L +D +K +
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGY 664
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 90/385 (23%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ RLF + R+T +N M+ G++ A +L++ + R P+NY+++ +L
Sbjct: 52 GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDNYSYNTLL 107
Query: 96 RACADTSCLF------------------VGLICHAQ--VIRLGWESYDFV-------LNG 128
A A +S L V + HA ++ L +D NG
Sbjct: 108 HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
+L Y ++ AR LF+ DVISW +L++GY + G++S AR++FD+MP ++ VSW
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSW 227
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+ M++GY + EA F+ +
Sbjct: 228 NIMVSGYARRGDMVEARRLFDAAPV----------------------------------- 252
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
D+ TA++ YA+ G +E A VFD+MP R+ ++ ++++ A EL
Sbjct: 253 ----RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 308
Query: 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
F M V +M Y +AGMLE AK V MP + D
Sbjct: 309 FNMMPCRNVASWNTMLTGY----------------AQAGMLEEAKAVFDTMP-QKDAVSW 351
Query: 369 GALLNACRVHGDVDLGKETVESLVE 393
A+L A G +ET++ +E
Sbjct: 352 AAMLAAYSQGG---CSEETLQLFIE 373
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 48/251 (19%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+VI I + ++G+++ A ++F MP ++ +++AM+ GY A F +
Sbjct: 37 EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWI------------------HA---------- 244
RP++ L A A +L R + HA
Sbjct: 97 ----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y D E D + ++ Y + G +E A +F+S DV ++ +L+SG + +
Sbjct: 153 YFDL-APEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211
Query: 305 AIELFMRMQLEGVVPNESM-------------SEIYGIEP--GVQHYGCLVDLLGRAGML 349
A ELF RM VV M ++ P V + +V + GML
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGML 271
Query: 350 EAAKKVVREMP 360
E A++V MP
Sbjct: 272 EEARRVFDAMP 282
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 164/456 (35%), Positives = 242/456 (53%), Gaps = 66/456 (14%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNE-----PIKAFALYKQMLRS-DFLPNNYTFSFILRA 97
LF + T F +N++IR + F LY++ML + PN++T +F+L+A
Sbjct: 80 LFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFVLKA 139
Query: 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW 157
C + L G HAQ G E +V GLL+LY
Sbjct: 140 C---TALGEGQQLHAQAFGHGLEPSPYVQTGLLNLY------------------------ 172
Query: 158 TSLINGYAKSGQISIARQMFDKMPE-KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
A+ ++++AR +FD M E KN V+WS+MI GY ++ + EAL F MQ G
Sbjct: 173 -------ARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
P+ +V ++ACA GALD G+W+HA++DR GI +D+ L TA+IDMYAKCG IE A S
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKS 285
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------- 321
VFDSM RD A++++I GLA H + A+ LF RM V PN
Sbjct: 286 VFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGL 345
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+M E+ GIE +++YGC+VDLL R+G+L+ A V MPI P++ + LL
Sbjct: 346 VDDGRRYWCTMQEL-GIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLL 404
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
A + +D+ + L E + +VLLSN+YA QW+ V +R+ M+DN V
Sbjct: 405 VASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTV 464
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
V GCS IE++G + +FV + ++ +++I L+L I
Sbjct: 465 VAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVLREI 500
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 40/240 (16%)
Query: 173 ARQMFDKMPEKNAVSWSAMING---------YVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
AR +FD++PE A ++++I D F L + + PN +
Sbjct: 77 ARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTF---LLYRRMLHAGSPAPNSFTL 133
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-P 282
L AC LG +G+ +HA +G+E + T ++++YA+C + A +VFD M
Sbjct: 134 AFVLKACTALG---EGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVE 190
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
++++ A++S+I G + A+ LF MQ GV P+E
Sbjct: 191 DKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKW 250
Query: 322 --SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+ + GI ++ L+D+ + G++E AK V M +E D A++ +HG
Sbjct: 251 VHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSM-VERDTKAWSAMIVGLAMHG 309
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 17/225 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F + R T W+ MI G A A L+ +ML+ PNN TF +L
Sbjct: 278 GLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVL 337
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDV 154
ACA + + G + LG E+ ++ L +D A M ++ +
Sbjct: 338 SACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNS 397
Query: 155 ISWTSLINGYAKSGQISI----ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ W +L+ S +I I +R++F+ P+ N ++ + N Y + Y
Sbjct: 398 VIWRNLLVASKSSNRIDIVELASRRLFELEPQ-NPENYVLLSNLYA----LNSQWDRVRY 452
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI 255
M+ + N+ +V ++ G ++H +V +G +I
Sbjct: 453 MRK-KMKDNNVTVVAGCSSIEING------YLHKFVVSDGSHPEI 490
>gi|224080297|ref|XP_002306087.1| predicted protein [Populus trichocarpa]
gi|222849051|gb|EEE86598.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 157/455 (34%), Positives = 231/455 (50%), Gaps = 31/455 (6%)
Query: 36 GDLSHGYRLF-VCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
GD+ RLF + + WNT+I G+ + P++A L+ M + N +TF +
Sbjct: 206 GDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEHTFGSV 265
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L ACAD L +G HA +++ G S FV +G++ +Y C M A L R
Sbjct: 266 LSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLHLTRGVRSS 325
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV---QVDLFKEALEHFNYM 211
S TS+I GY+ G + A ++FD + EKN++ W+A+ +GYV Q + F E L Y+
Sbjct: 326 FSITSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLRE--YI 383
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
P+ ++ A CAF AL G+ IH YV R GIE+D+ TA+IDMY+KCG I
Sbjct: 384 AKEAAIPDALILINAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSI 443
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
A +F + RD+ Y +++G A+H AI LF M GV P+
Sbjct: 444 PYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTFVALLSAC 503
Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE-PDNY 366
SM+E Y I P HY C++DL GRA LE ++ +P+E D
Sbjct: 504 RHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFMQRIPVEHQDAA 563
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V+GA NACR++ + +L KE E L+ D +V L+N+YA+ W + ++ R M
Sbjct: 564 VVGAFFNACRLNNNTELAKEAEEKLLNIEGDSGARYVQLANVYAAEGNWAEMGRISREMR 623
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
E +K GCS + +D V F SG+RT+ E I
Sbjct: 624 GKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESI 658
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 145/292 (49%), Gaps = 30/292 (10%)
Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
GL+ H + I+ G+ N L+HLY+ ++ A+KLFD R+ SW ++I+ + K
Sbjct: 7 GLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTIISAHIK 66
Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF-KEALEHFNYMQLCGFRPNHAGIVG 225
S ++ A+ +FD ++ V++++M++GYV VD + + ALE F MQ + N I
Sbjct: 67 SQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQS---KRNEIEI-D 122
Query: 226 ALTACAFLGALDQ------GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
LT + + + GR +H+Y+ + G + + +++IDMY+KCGC + AC VF
Sbjct: 123 DLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFK 182
Query: 280 SMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336
D+ + ++++ A+ LF R N+S+S I VQ+
Sbjct: 183 GCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRES----ELNDSVSWNTLISGYVQN- 237
Query: 337 GCLVDLLGRAGMLEAAKKVV--REMPIEPDNYVLGALLNACRVHGDVDLGKE 386
+EA K V E ++ + + G++L+AC ++ +GKE
Sbjct: 238 ---------GYPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKE 280
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 36/259 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML-RSDF 84
I+G+ S G++ RLF L+ + + +W + G+ + + F L ++ + +
Sbjct: 332 IVGYSSQ---GNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLREYIAKEAA 388
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
+P+ CA + L G H V R+G E ++ +Y+ C + A K
Sbjct: 389 IPDALILINAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAEK 448
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
LF + RD++ + ++ GYA G A ++LF+E
Sbjct: 449 LFLKVIERDLVLYNVMLAGYAHHGHEIKA------------------------INLFQEM 484
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIID 263
LE G P+ V L+AC G +D G + ++ + I + +ID
Sbjct: 485 LER-------GVGPDAVTFVALLSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMID 537
Query: 264 MYAKCGCIETACSVFDSMP 282
+Y + +E +P
Sbjct: 538 LYGRASQLEKMVLFMQRIP 556
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
+ +L G H ++G L I+ ++ +Y+K I A +FD MP R+ +++ ++
Sbjct: 1 MRSLKDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTI 60
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNESM 323
IS A A +F + +V SM
Sbjct: 61 ISAHIKSQNLAQAKSIFDSASVRDLVTYNSM 91
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 235/470 (50%), Gaps = 56/470 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G+L+ +FV + T W + I + + A L+ +M P+ YT +
Sbjct: 617 SKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 676
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
I+ ACA +S L G H+ VI+ G S V N
Sbjct: 677 SIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN------------------------- 711
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+LIN YAK G + AR +F K+P K+ VSW+ MI GY Q L EALE F MQ
Sbjct: 712 ------ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ 765
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
F+P+ + L ACA L ALD+GR IH ++ R G D+ + A++DMYAKCG +
Sbjct: 766 K-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 824
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---------- 322
A +FD +P +D+ ++T +I+G H AI F M++ G+ P+ES
Sbjct: 825 LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACS 884
Query: 323 --------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
M G+EP ++HY C+VDLL R G L A K + MPI+PD +
Sbjct: 885 HSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 944
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G LL+ CR+H DV L ++ E + E D+ +V+L+N+YA E+W V+K+R+ M+
Sbjct: 945 GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKR 1004
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
++ PGCS IEV G FV+G + + I +LL + +++ +F
Sbjct: 1005 GFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYF 1054
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 64/357 (17%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ GDL G ++F + F+WN ++ +A+ ++ +L+K+M + + N YTF+
Sbjct: 416 NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTC 475
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L+ A + H V++LG+ S V+N L+ Y ++ A LFD D
Sbjct: 476 VLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD 535
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V+SW S+ING ++NG+ LE F M +
Sbjct: 536 VVSWNSMING--------------------------CVVNGFSG-----NGLEIFIQMLI 564
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G + +V L A A +G L GR +H + + +++ ++DMY+KCG +
Sbjct: 565 LGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNG 624
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
A VF M + + ++TS I+ + AI LF MQ +GV P +IY + V
Sbjct: 625 ATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRP-----DIYTVTSIV 679
Query: 334 QHYGC----------------------------LVDLLGRAGMLEAAKKVVREMPIE 362
C L+++ + G +E A+ V ++P++
Sbjct: 680 HACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK 736
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 7/205 (3%)
Query: 120 ESYDFVLNG---LLHLYATCNCMDPARKLFDMSVNR----DVISWTSLINGYAKSGQISI 172
+SY+ LN +L L A ++ +++ + ++ D L+ Y G +
Sbjct: 363 KSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQ 422
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
R++FDK+ W+ +++ Y ++ F+E++ F MQ G N L A
Sbjct: 423 GRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAA 482
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LG + + + +H YV + G + + ++I Y K G +E+A ++FD + DV ++ S+
Sbjct: 483 LGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSM 542
Query: 293 ISGLANHDQSASAIELFMRMQLEGV 317
I+G + S + +E+F++M + GV
Sbjct: 543 INGCVVNGFSGNGLEIFIQMLILGV 567
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 26/214 (12%)
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+A IN + ++ + A+E + + L CA +L+ G+ +H+ +
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSK--SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
NGI +D LG ++ MY CG + +FD + N VF + L+S A ++ L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457
Query: 309 FMRMQLEGVVPN-----------------ESMSEIYG--IEPGVQHYGCLVDLLGRA--- 346
F +MQ GVV N + ++G ++ G +V+ L A
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517
Query: 347 -GMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
G +E+A + E+ EPD +++N C V+G
Sbjct: 518 FGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 550
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 244/467 (52%), Gaps = 34/467 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S LF + R WN M+ G+A + + ++A L+ D +T++ ++
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVV 262
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A G++ A+ + + V N ++ Y MD A++LF+M R+V
Sbjct: 263 SGYAQN-----GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SW +++ GYA++G + A+ +FD MP+K+AVSW+AM+ Y Q +E L+ F M C
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G N + L+ CA + AL+ G +H + R G + +G A++ MY KCG +E A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
+ F+ M RDV ++ ++I+G A H A+E+F M+ P++
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM +G+ +HY C++DLLGRAG L A ++++MP EPD+ + GA
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL A R+H + +LG+ E + E ++ G++VLLSNIYAS+ +W K+R ME+ V
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+KVPG S IEV V F +G+ + E+I L +D +K +
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGY 664
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 90/385 (23%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++ RLF + R+T +N M+ G++ A +L++ + R P+NY+++ +L
Sbjct: 52 GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDNYSYNTLL 107
Query: 96 RACADTSCLF------------------VGLICHAQ--VIRLGWESYDFV-------LNG 128
A A +S L V + HA ++ L +D NG
Sbjct: 108 HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
+L Y ++ AR LF+ DVISW +L++GY + G++S AR++FD+MP ++ VSW
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSW 227
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+ M++GY + EA F+ +
Sbjct: 228 NIMVSGYARRGDMVEARRLFDAAPV----------------------------------- 252
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
D+ TA++ YA+ G +E A VFD+MP R+ ++ ++++ A EL
Sbjct: 253 ----RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 308
Query: 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
F M V +M Y +AGMLE AK V MP + D
Sbjct: 309 FNMMPCRNVASWNTMLTGY----------------AQAGMLEEAKAVFDTMP-QKDAVSW 351
Query: 369 GALLNACRVHGDVDLGKETVESLVE 393
A+L A G +ET++ +E
Sbjct: 352 AAMLAAYSQGG---CSEETLQLFIE 373
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 48/251 (19%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+VI I + ++G+++ A ++F MP ++ +++AM+ GY A F +
Sbjct: 37 EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWI------------------HA---------- 244
RP++ L A A +L R + HA
Sbjct: 97 ----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
Y D E D + ++ Y + G +E A +F+S DV ++ +L+SG + +
Sbjct: 153 YFDL-APEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211
Query: 305 AIELFMRMQLEGVVPNESM-------------SEIYGIEP--GVQHYGCLVDLLGRAGML 349
A ELF RM VV M ++ P V + +V + GML
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGML 271
Query: 350 EAAKKVVREMP 360
E A++V MP
Sbjct: 272 EEARRVFDAMP 282
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 242/470 (51%), Gaps = 62/470 (13%)
Query: 48 LQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107
L RT W ++ +A+ EP++A ++ QM + D P+ +L A L G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG 241
Query: 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167
HA V+++G E+ +L L +YA C
Sbjct: 242 RSIHASVMKMGLETEPDLLISLNTMYAKC------------------------------- 270
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
GQ++ A+ +FDKM N + W+AMI+GY + K+A++ F+ M RP+ I A+
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAI 330
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
+ACA +G+L+Q RW+ YV R+ D+ + +A+IDM+AKCG +E A SVFD +RDV
Sbjct: 331 SACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVV 390
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SM 323
++++I G H Q+ AI L+ M+ +GV PN+ M
Sbjct: 391 VWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRM 450
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
++ + I P QHY C++DLLGRAG L+ A +V++ MP++P V GALL+AC+ H V+L
Sbjct: 451 AD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVEL 509
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
GK + L + G +V LSN+YA+ W+ V +VR M++ + K GCS +EV G
Sbjct: 510 GKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG 569
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLD 493
+ F G++++ EEI + I+ LK +G VA + SL D
Sbjct: 570 RLEGFRVGDKSHPRYEEIERQVEWIESRLK------EGGFVANKDASLHD 613
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 209/425 (49%), Gaps = 64/425 (15%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
Q++QI + L V G + F + K+I ++S GD++ ++F L F WN +IRG
Sbjct: 36 QLRQIHARLLVLGLQFSGFLITKLIH--ASSSYGDITFARQVFDDLPRPQVFPWNAIIRG 93
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ N A +Y +M + P+++TF +L+AC S L +G HAQV RLG+E+
Sbjct: 94 YSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEAD 153
Query: 123 DFVLNGLLHLYATCNCMDPARKLFD--MSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV NGL+ LYA C + AR +F+ R ++SWT++++ YA++G+
Sbjct: 154 VFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPV--------- 204
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
EALE F+ M+ +P+ +V L A L L+QGR
Sbjct: 205 ----------------------EALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGR 242
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IHA V + G+E + L ++ MYAKCG + TA +FD M + ++ + ++ISG A +
Sbjct: 243 SIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNG 302
Query: 301 QSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPG--VQHY-------------G 337
+ AI+LF M + V P+ + +++ +E + Y
Sbjct: 303 FAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISS 362
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
L+D+ + G +E A+ V + ++ D V A++ +HG +E + + R+++
Sbjct: 363 ALIDMFAKCGSVECARSVF-DRTLDRDVVVWSAMIVGYGLHGQ---AREAIS--LYRAME 416
Query: 398 HEGVH 402
+GVH
Sbjct: 417 RDGVH 421
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 160/488 (32%), Positives = 262/488 (53%), Gaps = 70/488 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMI----RGFAEKNEPIKAFALYKQMLRSDFLPNN 88
S + D + R+F + +F+WNT+I R K + I+ F Y+ + P+
Sbjct: 69 SSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIF--YRMLEEGSVEPDK 126
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+TF F+L+ACA L G HAQ+ +LG
Sbjct: 127 HTFPFLLKACAYVFALSEGRQAHAQIFKLG------------------------------ 156
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
++ DV SLI+ YA G +S+A ++F+KMP ++ VSW+ MI+ YVQ LF+ AL+ F
Sbjct: 157 -LDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLF 215
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG---IELDIILGTAIIDMY 265
MQ F P+ + ++ACA +GAL G W HAYV R + D+++ ++++DMY
Sbjct: 216 VEMQ-NSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMY 274
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPN---- 320
+KCG + A VF++MP D+ ++ S+I LA H + +A++ F R+ ++E +PN
Sbjct: 275 SKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTF 334
Query: 321 --------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
+ M Y IEP ++HYGCLVDLL R+G ++ A ++V M
Sbjct: 335 VGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMH 394
Query: 361 IEPDNYVLGALLNAC-RVHGDVDLGKETVESLV--ERSLDHEGVHVLLSNIYASTEQWNG 417
I+PD + +LL+AC + + V+L +E ++ E+++ GV+V+LS +YAS QWN
Sbjct: 395 IKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTIS-SGVYVMLSRVYASARQWND 453
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
V +R+ M D V K PGCS IE+DG+ EF +G+ ++ ++EI ++ I++ L+ +
Sbjct: 454 VGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGY 513
Query: 478 FDDGNEVA 485
D ++
Sbjct: 514 SPDCSQAT 521
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 35/298 (11%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS------IARQMFDKMPE 182
LHL C + +++ ++ R+ + S + Y++ +S A ++F+++
Sbjct: 28 FLHLLTDCTDLSKLKQIHAQAI-RNFSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDN 86
Query: 183 KNAVSWSAMINGYVQ-VDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGR 240
N+ W+ +I + +D ++A+E F M G P+ L ACA++ AL +GR
Sbjct: 87 PNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGR 146
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
HA + + G++LD+ +G ++I +YA CGC+ A VF+ MP R + ++ +I
Sbjct: 147 QAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSG 206
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY------------------------ 336
+A++LF+ MQ +M I G+
Sbjct: 207 LFENALKLFVEMQNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLI 266
Query: 337 -GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
LVD+ + G L A++V MP + D +++ A +HG + LVE
Sbjct: 267 NSSLVDMYSKCGSLRMAQQVFETMP-KHDLNSWNSMILALAMHGRGQAALQCFSRLVE 323
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 160/509 (31%), Positives = 250/509 (49%), Gaps = 69/509 (13%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS-- 92
+G + +LF + R+ WNTM+ G+A + + A ++K+M PN+ T++
Sbjct: 180 LGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSL 239
Query: 93 ---------------------------------FILRACADTSCLFVGLICHAQVIRLGW 119
+L CAD + + G H V++ G+
Sbjct: 240 LSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGY 299
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
E Y FV N L+ Y M A K+F N++++SW +LI+ YA+SG A F
Sbjct: 300 EDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLH 359
Query: 180 MPEK----------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
M + N +SWSA+I+G+ +++LE F MQL N I L+
Sbjct: 360 MEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSV 419
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA L AL+ GR +H Y RN + +I++G +I+MY KCG + VFD++ RD+ ++
Sbjct: 420 CAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISW 479
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSE 325
SLI G H +A+ F M + P+ + M
Sbjct: 480 NSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVT 539
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
+ IEP V+HY C+VDLLGRAG+L+ A +VR MPIEP+ YV GALLN+CR++ D+D+ +
Sbjct: 540 EFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVE 599
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
ET ++ G +LLSNIYA+ +W+ +VR ++K+PG S IEV V
Sbjct: 600 ETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWIEVRKKV 659
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
F +G + +E+I ++L ++ H+ S
Sbjct: 660 YTFSAGNLVHFGLEDIYVILEELNLHMAS 688
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 194/397 (48%), Gaps = 20/397 (5%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTT---FIWN 57
++Q +Q+ S L ++ PF ++I + LSH ++F + + +WN
Sbjct: 44 LQQARQLHSQLVLTTAHRLPFLAARLIAVYA--RFAFLSHARKVFDAIPLESLHHLLLWN 101
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
++IR A LY +M + FLP+ +T ++RAC+ ++ I H +++
Sbjct: 102 SIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQM 161
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+ ++ V+N L+ +Y M+ AR+LFD R ++SW ++++GYA + A ++F
Sbjct: 162 GFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVF 221
Query: 178 DKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+M + N+V+W+++++ + + L+ E LE F M+ G + L+ CA +
Sbjct: 222 KRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADM 281
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+D G+ IH YV + G E + + A+I Y K + A VF + N+++ ++ +LI
Sbjct: 282 AEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALI 341
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG-IEPGVQHYGCLVDLLGRAGMLEAA 352
S A A F+ M+ +S S+ + + P V + ++ G E +
Sbjct: 342 SSYAESGLCDEAYAAFLHME-------KSDSDDHSLVRPNVISWSAVISGFAYKGRGEKS 394
Query: 353 KKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKE 386
++ R+M + + + ++L+ C ++LG+E
Sbjct: 395 LELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRE 431
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 244/467 (52%), Gaps = 34/467 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S LF + R WN M+ G+A + + ++A L+ D +T++ ++
Sbjct: 82 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVV 137
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A G++ A+ + + V N ++ Y MD A++LF+M R+V
Sbjct: 138 SGYAQN-----GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 192
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SW +++ GYA++G + A+ +FD MP+K+AVSW+AM+ Y Q +E L+ F M C
Sbjct: 193 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 252
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G N + L+ CA + AL+ G +H + R G + +G A++ MY KCG +E A
Sbjct: 253 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 312
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
+ F+ M RDV ++ ++I+G A H A+E+F M+ P++
Sbjct: 313 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 372
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM +G+ +HY C++DLLGRAG L A ++++MP EPD+ + GA
Sbjct: 373 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 432
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL A R+H + +LG+ E + E ++ G++VLLSNIYAS+ +W K+R ME+ V
Sbjct: 433 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 492
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
+KVPG S IEV V F +G+ + E+I L +D +K +
Sbjct: 493 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGY 539
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 41/289 (14%)
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N L+ Y M AR+LFD RDV+SW +++GYA+ G + AR++FD P ++
Sbjct: 72 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 131
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA--LDQGRWIHA 244
+W+A+++GY Q + +EA F+ M P + A++ +D+ + +
Sbjct: 132 TWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMVAAYIQRRMMDEAKELFN 185
Query: 245 YVD-RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+ RN + +L YA+ G +E A +VFD+MP +D ++ ++++ + S
Sbjct: 186 MMPCRNVASWNTMLTG-----YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSE 240
Query: 304 SAIELFMRMQLEGVVPNESM--------SEIYGIEPGVQHYGCLVD-------LLGRA-- 346
++LF+ M G N S ++I +E G+Q +G L+ +G A
Sbjct: 241 ETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALL 300
Query: 347 ------GMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
G +E A+ EM E D ++ HG GKE +E
Sbjct: 301 AMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG---FGKEALE 345
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 115/267 (43%), Gaps = 59/267 (22%)
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
NG+L Y ++ AR LF+ DVISW +L++GY + G++S AR++FD+MP ++ V
Sbjct: 41 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 100
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246
SW+ M++GY + EA F+ +
Sbjct: 101 SWNIMVSGYARRGDMVEARRLFDAAPV--------------------------------- 127
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306
D+ TA++ YA+ G +E A VFD+MP R+ ++ ++++ A
Sbjct: 128 ------RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAK 181
Query: 307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
ELF M V +M Y +AGMLE AK V MP + D
Sbjct: 182 ELFNMMPCRNVASWNTMLTGY----------------AQAGMLEEAKAVFDTMP-QKDAV 224
Query: 367 VLGALLNACRVHGDVDLGKETVESLVE 393
A+L A G +ET++ +E
Sbjct: 225 SWAAMLAAYSQGG---CSEETLQLFIE 248
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 157/493 (31%), Positives = 258/493 (52%), Gaps = 39/493 (7%)
Query: 5 KQIQSHLTVSGTLWDP--FAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMI 60
+Q+ + TVSG L+ P F + ++ ++ + SH +LF + ++ + + +I
Sbjct: 32 EQLHAAATVSGLLFSPSSFLLNALLHLYASCPLP--SHARKLFDRIPHSHKDSVDYTALI 89
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R + P+ A Y QM + + L AC+ + H V++ G+
Sbjct: 90 RC----SHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFL 145
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ VLNG++ Y C + AR++F+ V+SWT ++ G K + + +FD+M
Sbjct: 146 RHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEM 205
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFR--PNHAGIVGALTACAFLGALD 237
PE+N V+W+ +I GYV KEA M CGF N + L+AC+ G +
Sbjct: 206 PERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVS 265
Query: 238 QGRWIHAY-VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
GRW+H Y V G +L +++GT+++DMYAKCG I A VF MP R+V A+ +++ GL
Sbjct: 266 VGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGL 325
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPG 332
A H +E+F M +E V P+ + YGI P
Sbjct: 326 AMHGMGKVVVEMFACM-VEEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPE 384
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HY C+VDLLGRAG LE A+ +V+++PI P+ VLG+LL AC HG + LG++ + LV
Sbjct: 385 IEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELV 444
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+ + H+LLSN+YA + + +R+ +++ +RKVPG S I VDG + F++G+
Sbjct: 445 QMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGD 504
Query: 453 RTNVLMEEIVLLL 465
+++ +I + L
Sbjct: 505 KSHPRTADIYMKL 517
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 147/438 (33%), Positives = 234/438 (53%), Gaps = 35/438 (7%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNN 88
C + G++ ++F + R WN MI G+ + A L+++M +R+
Sbjct: 8 CMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIE 67
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
F +T+ F + + W ++ YA M+ AR++F+
Sbjct: 68 MIDGFARSGDTETARRFFDDVPSELRNVVTWTV-------MVDGYARNAEMEAAREVFEG 120
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
R+ +W+S+I+GY K G + AR +FD++P +N V+W+++I+GY Q +EALE F
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 180
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
MQ GF P+ I L+AC+ LG LD G+ IH ++ GI+L+ + ++DMYAKC
Sbjct: 181 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 240
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G + A +F+ M +R+ + S+ISG A H QS A+E F RM+ P+E
Sbjct: 241 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 300
Query: 322 ----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
S E YG+ G++HYGCL+DLLGRAG ++ A +++ MP++P++
Sbjct: 301 SACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPND 360
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVER----SLDHEGVHVLLSNIYASTEQWNGVEKV 421
V GALL ACRVH D+++ VE +V+ S + +VLLSNIYA++++W EK+
Sbjct: 361 VVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKM 420
Query: 422 RRGMEDNEVRKVPGCSLI 439
R M + +K GCS I
Sbjct: 421 RMEMANKGFQKTSGCSSI 438
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 52/339 (15%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+C G++ +F + R WN++I G+A+ +A + +M F
Sbjct: 133 ISGYCKK---GNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFE 189
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T + +L AC+ L G H + G + FVLNGL+ +YA C + AR +
Sbjct: 190 PDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLI 249
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F+ +R+ W S+I+G+A GQ KEAL
Sbjct: 250 FEGMAHRNRACWNSMISGFAIHGQS-------------------------------KEAL 278
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
E F M+ P+ + L+ACA G ++ G I + +++ G+ I +ID+
Sbjct: 279 EFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLL 338
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325
+ G I+ A + MP + +D A+ R+ L+ + + + E
Sbjct: 339 GRAGRIKEAYDLIKRMP-------------VKPNDVVWGALLGACRVHLDMEMADRVVEE 385
Query: 326 IYGIEPGV-----QHYGCLVDLLGRAGMLEAAKKVVREM 359
I ++ + HY L ++ + E A+K+ EM
Sbjct: 386 IVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEM 424
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 32/250 (12%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
TSL+ YAK G + +R++FD MPE+NAV+W+AMI GY+ K A+ F M +
Sbjct: 4 TSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSI---- 59
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACS 276
+ + A G + R + D EL +++ T ++D YA+ +E A
Sbjct: 60 RTAVTWIEMIDGFARSGDTETAR---RFFDDVPSELRNVVTWTVMVDGYARNAEMEAARE 116
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336
VF+ MP R+ FA++S+ISG A +F R+ + +V ++
Sbjct: 117 VFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLV----------------NW 160
Query: 337 GCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
L+ + G E A + +M EPD + ++L+AC G +D GK+ +
Sbjct: 161 NSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKK-----IH 215
Query: 394 RSLDHEGVHV 403
++H+G+ +
Sbjct: 216 HMMNHKGIKL 225
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 21/270 (7%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
L+ +YA C + +RK+FD R+ ++W ++I GY +G A +F+KM + AV+W
Sbjct: 6 LVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTW 65
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
MI+G+ + + A F+ + P+ V T A + V
Sbjct: 66 IEMIDGFARSGDTETARRFFDDV------PSELRNVVTWTVMVDGYARNAEMEAAREVFE 119
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
+ + +++I Y K G ++ A S+FD +P R++ + SLISG A + S A+E
Sbjct: 120 GMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEA 179
Query: 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDN 365
F +MQ EG P+E ++ + G+L+A KK+ M I+ +
Sbjct: 180 FGKMQAEGFEPDEVT------------IASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQ 227
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERS 395
+VL L++ GD+ + E + R+
Sbjct: 228 FVLNGLVDMYAKCGDLANARLIFEGMAHRN 257
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
++GT+++ MYAKCG + + VFD MP R+ + ++I G + S SA+ LF +M +
Sbjct: 1 MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60
Query: 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL-GALLNA 374
V IE ++D R+G E A++ ++P E N V +++
Sbjct: 61 TAVT--------WIE--------MIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDG 104
Query: 375 CRVHGDVDLGKETVESLVERSL 396
+ +++ +E E + +R+
Sbjct: 105 YARNAEMEAAREVFEGMPQRNF 126
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 233/420 (55%), Gaps = 39/420 (9%)
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
LP++ F +L AC + + H ++IR G+ + + L+ Y CN ++ A +
Sbjct: 8 LPDHQLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAYQ 67
Query: 145 LFDMSVNRDVISWTS-------LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
+ R V SWT +I+ + + G+ IA+++F KMP+++ V+W++MI GYV+
Sbjct: 68 VI-----RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVR 122
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
F+EAL F M P+ +TACA LGAL+ +W+H + + IE++ IL
Sbjct: 123 NGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFIL 182
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+A+IDMY+KCG IETA VF+S+ DV + SLI+GLA H + A+ +F +M+ E V
Sbjct: 183 SSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENV 242
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
+P+ + M Y I+P ++HYG +VDLLGRAG+L+ A
Sbjct: 243 LPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAY 302
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
++ MP+EPD V LL+ACR H + +LG+ V ++ S G +VLLSNIY S
Sbjct: 303 AMITAMPMEPDVIVWRILLSACRTHRNTELGEVAVANI---SGPKSGDYVLLSNIYCSQN 359
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+W+ ++VR M++ VRK G S E + VV F +G++++ E + +L G+ + K
Sbjct: 360 RWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRTK 419
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 116/270 (42%), Gaps = 33/270 (12%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
IG+ ++F + R WN+MI G+ + +A ++ ML S+ P+ +TF+ +
Sbjct: 92 IGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASV 151
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+ ACA L H +++ E + + L+ +Y+ C ++ A+++F+ DV
Sbjct: 152 ITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDV 211
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
W SLING A G A +F KM +N +
Sbjct: 212 SVWNSLINGLAVHGLALDAMMVFSKMEAENVL---------------------------- 243
Query: 215 GFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
P+ +G L AC+ G + +GR + + I+ + A++D+ + G ++
Sbjct: 244 ---PDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDE 300
Query: 274 ACSVFDSMP-NRDVFAYTSLISGLANHDQS 302
A ++ +MP DV + L+S H +
Sbjct: 301 AYAMITAMPMEPDVIVWRILLSACRTHRNT 330
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 242/499 (48%), Gaps = 64/499 (12%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++ I +H+ G D F +I S L LF+ ++ R WN+MI G
Sbjct: 139 VRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGL 198
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
E A L+ +M D + S++
Sbjct: 199 VRCGELQGACKLFDEMPDRDMV-----------------------------------SWN 223
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
+L+G YA MD A +LF+ R+++SW++++ GY+K G + +AR +FD+ P K
Sbjct: 224 TMLDG----YAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVK 279
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
N V W+ +I GY + L +EA E + M+ G RP+ ++ L ACA G L G+ IH
Sbjct: 280 NVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIH 339
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLANHDQS 302
A + R + A IDMYAKCGC++ A VF M +DV ++ S+I G A H
Sbjct: 340 ASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHG 399
Query: 303 ASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGC 338
A+ELF M EG P+ SM ++YGI P V+HYGC
Sbjct: 400 EKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGC 459
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
++DLLGR G L+ A ++R MP+EP+ +LG LLNACR+H DVDL + E L +
Sbjct: 460 MMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSD 519
Query: 399 EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLM 458
G + LLSNIYA W V VR M++ K G S IEV+ V EF ++++
Sbjct: 520 PGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKS 579
Query: 459 EEIVLLLFGIDKHLKSLCF 477
++I ++ + + L+ + +
Sbjct: 580 DDIYQMIDRLVQDLRQVGY 598
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 186/426 (43%), Gaps = 73/426 (17%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ + QI + + + D F K+I + S L+ +F + + ++N++I
Sbjct: 34 LDSVNQIHAQVLKANLHQDLFVAPKLIA--AFSLCRHLASAVNVFNHVPHPNVHLYNSII 91
Query: 61 RGFAEKNE----PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
R A + P AF QM ++ P+N+T+ F+L+AC+ S L + + HA V +
Sbjct: 92 RAHAHNSSHRSLPFNAFF---QMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEK 148
Query: 117 LGWESYDFVLNGLLHLYATCN--CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+G+ FV N L+ Y+ C +D A LF RDV++W S+I G + G++ A
Sbjct: 149 IGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGAC 208
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++FD+MP+++ VSW+ M++GY + A E F M
Sbjct: 209 KLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMP---------------------- 246
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
W RN I+ + ++ Y+K G ++ A +FD P ++V +T++I+
Sbjct: 247 ------W------RN-----IVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIA 289
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNESM----------SEIYGIEP------------- 331
G A + A EL+ +M+ G+ P++ S + G+
Sbjct: 290 GYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRC 349
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
G + +D+ + G L+AA V M + D +++ +HG + E +
Sbjct: 350 GAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWM 409
Query: 392 VERSLD 397
V+ +
Sbjct: 410 VQEGFE 415
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 164/515 (31%), Positives = 255/515 (49%), Gaps = 62/515 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD--LSHGYRLFVCLQYRTTFIW-N 57
++ + Q+ + +G P V +++ C+ G L++ ++F + + +W N
Sbjct: 38 LRGLAQLHAAAVKAGLAAHPALVTRLLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYN 97
Query: 58 TMIRGFAEKNEPIKAFA-----LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112
T++RG+A + + + ++ +ML P+ YTF +L+ACA G HA
Sbjct: 98 TLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHA 157
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
++LG +D+V +LIN YA+ G
Sbjct: 158 VAVKLGAAGHDYV-------------------------------RPTLINMYAECGDARA 186
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR F + VS++AMI V+ EAL F MQ G P ++ L+ACA
Sbjct: 187 ARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACAL 246
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LGAL GRW+H YV + G+ + + TA++DMYAKCG +E A +VF M +RD A++ +
Sbjct: 247 LGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVM 306
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPNE----------SMSEI-------------YGI 329
I ANH AI LF M+ +G+ P++ S S + +GI
Sbjct: 307 IVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKDHGI 366
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
PG++HYGC+ DLL R+G LE A K + E+PI P + LL+AC HGDV+LGK E
Sbjct: 367 VPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFE 426
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
++E H G +V+ SN+ A+T W + +VR+ M D V KVPGCS IE+D V EF
Sbjct: 427 RILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFF 486
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+G+ + +E ++ + LK + + D + V
Sbjct: 487 AGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHV 521
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/437 (33%), Positives = 223/437 (51%), Gaps = 34/437 (7%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+K +Q+ + + D V K++ C + D + +F +Q TF WN MIR
Sbjct: 47 HVKLVQAKIIRNNLSDDQLLVRKLLRLCFSYQKVD--YATLIFDQIQNPHTFTWNFMIRA 104
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
+ +A LY M+ F P+ +TF F+++AC D S L G H I+ G+
Sbjct: 105 YNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKD 164
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
F+ N L+ LY C +D ARKLFD R V+SWT+ + G G++ AR FD+MP
Sbjct: 165 TFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPM 224
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+N VSW+AMINGYV+ +EA E F MQL RPN +VG L AC LG+L+ GR I
Sbjct: 225 RNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRI 284
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H Y NG ++ + LGTA+IDMY+KCG IE A VF+ M + + + S+I+ L H
Sbjct: 285 HEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFG 344
Query: 303 ASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGC 338
A+ LF +M+ V P+ + M+E YGI P ++HY C
Sbjct: 345 KEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYGITPMLEHYTC 404
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
+++L RA ML ++V MP++ ++ AL+ + + + E+ E H
Sbjct: 405 MIELYTRAAMLNEVSELVNSMPMKLNSNPAAALVWPSIIDSNAE-----NENFFEH---H 456
Query: 399 EGVHVLLSNIYASTEQW 415
E +H + + + + W
Sbjct: 457 EDLHCIGTPFSSQNQFW 473
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 234/460 (50%), Gaps = 27/460 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +F + R WNTM+ G+A+ +A YK+ RS N ++F+ +L
Sbjct: 127 GMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLL 186
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L + H QV+ G+ S + ++ YA C M+ A++ FD +D+
Sbjct: 187 TACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIH 246
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
WT+LI+GYAK G + A ++F +MPEKN VSW+A+I GYV+ AL+ F M G
Sbjct: 247 IWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALG 306
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P L A A + +L G+ IH Y+ R + + I+ +++IDMY+K G +E +
Sbjct: 307 VKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASE 366
Query: 276 SVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
VF ++ D + ++IS LA H A+ + M V PN
Sbjct: 367 RVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHS 426
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
ESM+ +GI P +HY CL+DLLGRAG + + + EMP EPD ++ A
Sbjct: 427 GLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNA 486
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
+L CR+HG+ +LGK+ + L++ + ++LLS+IYA +W VEK+R M+ V
Sbjct: 487 ILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRV 546
Query: 431 RKVPGCSLIEVDGVVCEFV--SGERTNVLMEEIVLLLFGI 468
K S IE++ V F G + EEI +L +
Sbjct: 547 NKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNL 586
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 153/341 (44%), Gaps = 55/341 (16%)
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNR 152
+L+ C DT L G H + G++ + +L N L+ +Y C A K+FD R
Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
++ SW ++++GY KSG + AR +FD MPE++ VSW+ M+ GY Q EAL + +
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G + N G LTAC L R H V G +++L +IID YAKCG +E
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 273 TACSVFDSMPNRDVFAYTSLISGLAN-HDQSAS--------------------------- 304
+A FD M +D+ +T+LISG A D A+
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGS 291
Query: 305 ---AIELFMRMQLEGVVPNESM-----------------SEIYG------IEPGVQHYGC 338
A++LF +M GV P + EI+G + P
Sbjct: 292 GNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISS 351
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+D+ ++G LEA+++V R + D +++A HG
Sbjct: 352 LIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHG 392
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 123/302 (40%), Gaps = 37/302 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +GD+ +LF + + W +I G+ + +A L+++M+ P +TFS
Sbjct: 256 AKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFS 315
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L A A + L G H +IR V++ L+ +Y+ ++ + ++F + ++
Sbjct: 316 SCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDK 375
Query: 153 -DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
D + W ++I+ A+ G A +M D MI VQ
Sbjct: 376 HDCVFWNTMISALAQHGLGHKALRMLDD-----------MIKFRVQ-------------- 410
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
PN +V L AC+ G +++G RW + ++GI D +ID+ + GC
Sbjct: 411 ------PNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGC 464
Query: 271 IETACSVFDSMPNRDVFAYTSLISGL----ANHDQSASAIELFMRMQLEGVVPNESMSEI 326
+ + MP + I G+ N + A + +++ E P +S I
Sbjct: 465 FKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSI 524
Query: 327 YG 328
Y
Sbjct: 525 YA 526
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGT 259
+A+ + G R + L C +L QG+WIH ++ G + + +L
Sbjct: 27 LSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSN 86
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
+I MY KCG AC VFD M R+++++ +++SG A +F M VV
Sbjct: 87 HLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVS 146
Query: 320 NESM 323
+M
Sbjct: 147 WNTM 150
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 230/467 (49%), Gaps = 58/467 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
I QIQ+ L + P I C + L + F + FI N++IR
Sbjct: 27 HIPQIQAQLILQNLHSHPLIAHHFINTCHHLHL--LGSAFLFFTHIPKPHVFICNSLIRA 84
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F+ P LY M R+ PNNYTF F+L++ AD L G H V++ G S
Sbjct: 85 FSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASD 144
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+V N L+ +YA+C G++ + +++FD+M
Sbjct: 145 LYVQNTLMDVYASC-------------------------------GKMGLCKKVFDEMLH 173
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+ VSW+ +I GY + +AL F MQ G PN IV AL ACA GA++ G WI
Sbjct: 174 TDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWI 233
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H +V E+D++LGTA+IDMY KCG I+ A +VF +M ++V+ + I+GLA+
Sbjct: 234 HEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCG 293
Query: 303 ASAIELFMRMQLEGVVPNE-----------------SMSEI--------YGIEPGVQHYG 337
AI F RM EGV ++ S +I +G PG++HY
Sbjct: 294 EEAIAWFKRMDEEGVEADDVTLVAVLSACSHSGLVNSGRQIFWSLIHGRFGFSPGIKHYS 353
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VD+L R G +E A ++++MP E + G+LL R HG +++ + LVE +
Sbjct: 354 CMVDILARNGCIEEACVMIKDMPFEATRSMWGSLLTGSRAHGSLEVSEIAARRLVEMEPE 413
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ G +V+LSNIYA +W+ VEKVR M++ ++K G S +E+ V
Sbjct: 414 NGGYYVVLSNIYAEMGKWSEVEKVREIMKERGLKKDLGSSSVELQEV 460
>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Vitis vinifera]
Length = 667
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/489 (32%), Positives = 249/489 (50%), Gaps = 27/489 (5%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K++Q + G D F V +I + S D + LF + R WN+MI G++
Sbjct: 159 KEVQCFVLRHGFDSDIFVVNALITYYSRCD--EYGIARILFDRMHDRDIVSWNSMIAGYS 216
Query: 65 EKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+ LY++ML S L PN T +L+ACA T+ L G+ H +I E
Sbjct: 217 QGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDV 276
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
N L+ LYA C +D AR+LF+ N+D +++ S+++GY G + A +F +M
Sbjct: 277 SAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNP 336
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+W+A+I+G VQ + + LE MQ GFRPN + L + L G+ IH
Sbjct: 337 RLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIH 396
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
AY RNG +I + T+IID YAK G + A VFD +R + +T++IS + H +
Sbjct: 397 AYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDAN 456
Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
+A+ LF M G P+ + M YG +P V+HY C+
Sbjct: 457 AALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACM 516
Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
V +L RAGML A + + +MPIEP+ V GALLN V GDV+LGK + L ++
Sbjct: 517 VGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENT 576
Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
G +V+++N+Y+ +W E +R M+ ++K+PG S IE G + F++ + ++ E
Sbjct: 577 GNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFIARDVSSERSE 636
Query: 460 EIVLLLFGI 468
EI +L G+
Sbjct: 637 EIYGMLEGL 645
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 187/419 (44%), Gaps = 63/419 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++Q KQ+ + + +S D F K+I F S S+ L +++F + + F WN M+
Sbjct: 50 LRQAKQLHARIVLSSLTPDNFLASKLITFYSKSN--HLYEAHKVFDKILDKNIFSWNAML 107
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFL---PNNYTFSFILRACADTSCLFVGLICHAQ---- 113
G++ N + L +L S L P+N+T + +L+A S LF I +
Sbjct: 108 IGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKAL---SVLFPDSILAKEVQCF 164
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
V+R G++S FV+N L+ Y+ C+ AR LFD +RD++SW S+I GY++ G
Sbjct: 165 VLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDC 224
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
++++ KM + G RPN +V L ACA
Sbjct: 225 KELYRKMLDST------------------------------GLRPNGVTVVSVLQACAQT 254
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
L G +H ++ +E+D+ ++I +YAKCG ++ A +F+ M N+D Y S++
Sbjct: 255 NDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIV 314
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
SG H A++LF M+ N +S + G+ C G+LE +
Sbjct: 315 SGYMTHGFVDKAMDLFREMK------NPRLSTWNAVISGLVQNNC------NEGILELVQ 362
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412
+ ++E P+ L ++L ++ GK + H NIY +T
Sbjct: 363 E-MQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAH--------NIYVAT 412
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 134/318 (42%), Gaps = 54/318 (16%)
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
F +++ C+D L HA+++ +F+ + L+ Y+ N + A K+FD
Sbjct: 36 AFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKI 95
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+++++ SW +++ GY ++ N +V +L
Sbjct: 96 LDKNIFSWNAMLIGY-------------------------SIHNMHVHTLNLLSSLLPSY 130
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALD-QGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
+ L +P++ I L A + L + + +V R+G + DI + A+I Y++C
Sbjct: 131 SLTL---KPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRC 187
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPN------- 320
A +FD M +RD+ ++ S+I+G + EL+ +M G+ PN
Sbjct: 188 DEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSV 247
Query: 321 -----ESMSEIYG-----------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
++ ++G +E V + L+ L + G L+ A+++ EM D
Sbjct: 248 LQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMS-NKD 306
Query: 365 NYVLGALLNACRVHGDVD 382
G++++ HG VD
Sbjct: 307 EVTYGSIVSGYMTHGFVD 324
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 207 HFNYMQLCGFRPNHAGIVGALTA-CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
H LC G G L C+ L Q + +HA + + + D L + +I Y
Sbjct: 20 HHCLQNLCSVNGLDYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFY 79
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+K + A VFD + ++++F++ +++ G + H+
Sbjct: 80 SKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHN 114
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 233/469 (49%), Gaps = 64/469 (13%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF--LPNNYTFSFILRACADTSCLFVGL 108
RTT +N ++RG + A L+ M P++YT+ L++CA T L +G
Sbjct: 83 RTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGR 142
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
H+ RLG + FV + + +YA C D A ++F+ RDV+SW ++I+G+A +G
Sbjct: 143 QIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAG 202
Query: 169 --------------------------------------QISIARQMFDKMPEKNAVSWSA 190
I++ + +FD+M K +SW+A
Sbjct: 203 LFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNA 262
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
M+ Y ++ EA+E F MQ G P+ + L +C + AL G+ IH + R
Sbjct: 263 MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR 322
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+ ++L A++DMYA CGC++ A VFDSM RDV ++TS+IS H AI+LF
Sbjct: 323 MCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFE 382
Query: 311 RMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRA 346
+M +G+ P+ SM+ + I P ++HY C+VDLLGRA
Sbjct: 383 KMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRA 442
Query: 347 GMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406
G + A + MPI+P+ V GALL ACR+H ++D+G +SL+ + G +VLLS
Sbjct: 443 GCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLS 502
Query: 407 NIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
NIYA +W V VR ME ++K+PG S E+ V F G+ ++
Sbjct: 503 NIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSH 551
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 113/267 (42%), Gaps = 36/267 (13%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D + I+ + + D++ +F ++++ WN M+ + ++A L+ +
Sbjct: 223 DAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMR 282
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M + P+ T + +L +C + S L +G H + R S + N L+ +YA C C
Sbjct: 283 MQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGC 342
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+ AR +FD RDV+SWTS+I+ Y + G +G +
Sbjct: 343 LKEARDVFDSMGTRDVVSWTSIISAYGRHG------------------------HGREAI 378
Query: 199 DLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDI 255
DLF+ ++C G P+ V L AC+ G LD G+ + ++ I +
Sbjct: 379 DLFE---------KMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKL 429
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMP 282
++D+ + GCI A MP
Sbjct: 430 EHYACMVDLLGRAGCIREAYDFIMVMP 456
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 27/248 (10%)
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR--PNHAGIVGALTACAFL 233
+ D P++ V ++ ++ G L ++AL F M+ G P+H AL +CA
Sbjct: 76 VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
L GR IH+ R G++ ++ + + I MYA+CG + A +F+ M RDV ++ ++I
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195
Query: 294 SGLANHDQSASAIELFMRM-----------QLEGVVPNESMSEIYGIE-----------P 331
SG A+ A+++F + + ++P+ + + I
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255
Query: 332 GVQHYGCLVDLLGRAGM-LEAAKKVVREMP--IEPDNYVLGALLNACRVHGDVDLGKETV 388
G+ + ++ + M +EA + +R IEPD L +L +C + LGK
Sbjct: 256 GLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIH 315
Query: 389 ESLVERSL 396
E + R +
Sbjct: 316 EVIKRRRM 323
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 258/506 (50%), Gaps = 59/506 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ +++ +H+ + L + +++ F D L ++ + + W MI
Sbjct: 67 LREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC--LEDARKVLDEMPEKNVVSWTAMI 124
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+++ +A +++ +M+RSD PN +TF+ +L +C S L +G H +++ ++
Sbjct: 125 SRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYD 184
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S+ FV +SL++ YAK+GQI AR++F+ +
Sbjct: 185 SHIFV-------------------------------GSSLLDMYAKAGQIEEAREIFECL 213
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE++ VS +A+I GY Q+ L +EALE F +Q G RPN+ LTA + L LD G+
Sbjct: 214 PERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGK 273
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
H +V R + +L ++IDMY+KCG + A +FD+MP R ++ +++ G + H
Sbjct: 274 QAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHG 333
Query: 301 QSASAIELFMRMQLEGVVPNESMSEI--------------------------YGIEPGVQ 334
+ELF M+ E V ++++ + YGI+P +
Sbjct: 334 LGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTE 393
Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
HYGC+VD+LGRAG ++ A + ++ MP +P VLG+LL ACRVH VD+G+ L+E
Sbjct: 394 HYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEI 453
Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
++ G +V+LSN+YAS +W V VR M V K PG S I+ + + F + +RT
Sbjct: 454 EPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRT 513
Query: 455 NVLMEEIVLLLFGIDKHLKSLCFFDD 480
+ EE++ + I +K + D
Sbjct: 514 HPRREEVLAKMKEISIKMKQAGYVPD 539
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 145/324 (44%), Gaps = 58/324 (17%)
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+ + +L AC D L G HA +I+ + ++ LL Y C+C++ ARK+
Sbjct: 52 HCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVL-- 109
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
D+MPEKN VSW+AMI+ Y Q EAL F
Sbjct: 110 -----------------------------DEMPEKNVVSWTAMISRYSQTGHSSEALSVF 140
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
M +PN LT+C L G+ IH + + + I +G++++DMYAK
Sbjct: 141 AEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA 200
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------- 320
G IE A +F+ +P RDV + T++I+G A A+E+F R+Q EG+ PN
Sbjct: 201 GQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLL 260
Query: 321 ESMSEIYGIEPGVQHY---------------GCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
++S + ++ G Q + L+D+ + G L A+++ MP E
Sbjct: 261 TALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP-ERTA 319
Query: 366 YVLGALLNACRVHGDVDLGKETVE 389
A+L HG LG+E +E
Sbjct: 320 ISWNAMLVGYSKHG---LGREVLE 340
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 200/331 (60%), Gaps = 24/331 (7%)
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G+ A +F +MP ++ VSW++M+ Y Q EAL F+ M+ G +P A +V L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
+ACA LGALD+G +H Y++ N IE++ I+GTA++DMYAKCG I A VF++M ++DV
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SM 323
A+ ++I+G+A H A LF M+ GV PN+ M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341
Query: 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383
S YGIEP V+HYGC++DLL RAG+LE A +++ MP+EP+ LGALL CR+HG+ +L
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401
Query: 384 GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
G+ + L+ H G ++LLSNIYA+ ++W+ KVR M+ N + KVPG S+IE+ G
Sbjct: 402 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 461
Query: 444 VVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
+V FV+G+ ++ +I L I LKS
Sbjct: 462 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKS 492
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 109/248 (43%), Gaps = 32/248 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + LF + R WN+M+ +A+ +P +A AL+ QM P T +L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L GL HL+ N D + + I
Sbjct: 222 SACAHLGALDKGL----------------------HLHTYIN---------DNRIEVNSI 250
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
T+L++ YAK G+IS+A Q+F+ M K+ ++W+ +I G KEA F M+ G
Sbjct: 251 VGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAG 310
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
PN V L+AC+ G +D+G + + GIE + +ID+ A+ G +E A
Sbjct: 311 VEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEA 370
Query: 275 CSVFDSMP 282
+ +MP
Sbjct: 371 MELIGTMP 378
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 238/471 (50%), Gaps = 39/471 (8%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F ++ + W+ MI + + KA L++ ML S LP+ T + +L AC +
Sbjct: 316 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRN 375
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L HAQ G V N L+H Y+ +D A LFD RD +SW+ ++ G
Sbjct: 376 LTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 435
Query: 164 YAKSGQISIARQMFDKM------PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
+AK G F ++ P+ + + N E+L F+ M+ G
Sbjct: 436 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNAN---------ESLVLFDKMREEGVV 486
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+ +V + ACA LGA+ + R I Y+ R +LD+ILGTA+IDM+AKCGC+E+A +
Sbjct: 487 PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 546
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES--------------- 322
FD M ++V +++++I+ H Q A++LF M G++PN+
Sbjct: 547 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLV 606
Query: 323 ---------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
M E Y + V+HY C+VDLLGRAG L+ A K++ M +E D + GA L
Sbjct: 607 EEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLG 666
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433
ACR H DV L ++ SL+E + G ++LLSNIYA+ +W V K R M ++K+
Sbjct: 667 ACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKI 726
Query: 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
PG + IEVD +F G+ T+ +EI +L + L+ + + D N V
Sbjct: 727 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFV 777
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 127/260 (48%), Gaps = 49/260 (18%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG-- 168
HAQ G V N L++ Y+ +D A LFD RD +SW+ ++ G+AK G
Sbjct: 101 HAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY 160
Query: 169 -----------------------------------------------QISIARQMFDKMP 181
+I AR +FDKM
Sbjct: 161 INCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQ 220
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E++ V+W+ MI GY + E+L F M+ G P+ +V + ACA LGA+ + R
Sbjct: 221 ERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARI 280
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
I Y+ R +LD+ILGTA+IDMYAKCGC+E+A +FD M ++V +++++I+ H Q
Sbjct: 281 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 340
Query: 302 SASAIELFMRMQLEGVVPNE 321
A++LF M G++P++
Sbjct: 341 GRKALDLFRMMLSSGMLPDK 360
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 115/479 (24%), Positives = 202/479 (42%), Gaps = 103/479 (21%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+ Q++Q+ + +V G L + K+I F S D ++G LF + R + W+ M+
Sbjct: 94 LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYG--LFDGMCVRDSVSWSVMV 151
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGL---------ICH 111
GFA+ + I F +++++R P+NYT F++RAC D L + L I
Sbjct: 152 GGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIED 211
Query: 112 AQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLF------------------------ 146
A+ + + D V ++ YA C + + LF
Sbjct: 212 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK 271
Query: 147 ----------DMSVNR-----DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
D + R DVI T++I+ YAK G + AR++FD+M EKN +SWSAM
Sbjct: 272 LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAM 331
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I Y ++AL+ F M G P+ + L AC L Q R +HA +G+
Sbjct: 332 IAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGM 391
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA-------------- 297
++I+ ++ Y+ ++ A +FD M RD +++ ++ G A
Sbjct: 392 LQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 451
Query: 298 ---------NHD-----QSASAIELFMRMQLEGVVPNE--------------SMSEIYGI 329
N+ + ++ LF +M+ EGVVP++ +M + I
Sbjct: 452 LIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI 511
Query: 330 EPGVQHYG---------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+ +Q ++D+ + G +E+A+++ M E + A++ A HG
Sbjct: 512 DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHG 569
>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 164/502 (32%), Positives = 259/502 (51%), Gaps = 64/502 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDF 84
+ G+C A G++ GY LF + R W MI GF A L+ +M R +D
Sbjct: 172 VSGYCRA---GEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADI 228
Query: 85 LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF---VLNGLLHLYAT------ 135
PN TF + ACA +G HA++I G ++ D+ + GL+ +Y++
Sbjct: 229 TPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDY 288
Query: 136 ----------------CNCM----------DPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
CN M D A+ LFD RD I+WTS+I+GY G
Sbjct: 289 AHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGN 348
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+S A +F MPEK+AV+W+ MI+G+V+ +LF EA F+ M G RP + A
Sbjct: 349 VSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGA 408
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
+ +LDQGR +HA + + + D+IL ++I MYAKCG I A +F M + D+ ++
Sbjct: 409 AGAVASLDQGRQLHAMLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISW 468
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSE 325
S+I G ++H + A+E+F M G PN +MS+
Sbjct: 469 NSMIMGFSHHGLANEALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSD 528
Query: 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV-HGDVDLG 384
++ ++PG++HY C+V+LLGRAG L+ A++++ +P+E ++ + GALL C + D+
Sbjct: 529 VFAVQPGLEHYICMVNLLGRAGKLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIA 588
Query: 385 KETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
K ++E + HVLL NIYA++ Q K+R+ M V+KVPGCS I ++G
Sbjct: 589 KRAATRILELDPLNAPAHVLLCNIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVLNGR 648
Query: 445 VCEFVSGERTNVLMEEIVLLLF 466
V F+SG++ + ++++ LLF
Sbjct: 649 VHVFLSGDKPRLQAKDMLSLLF 670
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 166/381 (43%), Gaps = 75/381 (19%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G LS +LF + R W +M+ G A+ + +A +L+++M P+ S+
Sbjct: 55 GRLSEAMKLFEEMPERNVVSWTSMLCGLADAGKICEAKSLFEEM------PDRNVVSW-- 106
Query: 96 RACADTSCLFVGLICHA--QVIRLGWESYDF----VLNGLLHLYATCNCMDPARKLFDMS 149
+ + VGLI + + R+ ++ NG++ YA M+ AR LFD
Sbjct: 107 ------NAMIVGLIRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEM 160
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+R+VI+WTS+++GY ++G++ +F MP++N VSW+AMI G+ +++AL F
Sbjct: 161 EDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFL 220
Query: 210 YMQL-CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD----------IILG 258
M+ PN + ACA LG G+ +HA + G++ D I +
Sbjct: 221 EMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMY 280
Query: 259 TAI-------------------------IDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
++I I+ Y + G ++ A ++FD+MP RD +TS+I
Sbjct: 281 SSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMI 340
Query: 294 SGLANHDQSASAIELFMRM----------QLEGVVPNESMSE---------IYGIEPGVQ 334
G + A LF+ M + G V NE +E G+ P
Sbjct: 341 DGYLVIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSS 400
Query: 335 HYGCLVDLLGRAGMLEAAKKV 355
Y L G L+ +++
Sbjct: 401 TYAILFGAAGAVASLDQGRQL 421
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 15/202 (7%)
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
SY+ +L+GLL C + A KLF+ R+V+SWTS++ G A +G+I A+ +F++M
Sbjct: 43 SYNALLSGLLQ----CGRLSEAMKLFEEMPERNVVSWTSMLCGLADAGKICEAKSLFEEM 98
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P++N VSW+AMI G ++ + A F+ + N A G + A G +++ R
Sbjct: 99 PDRNVVSWNAMIVGLIRNGDLEAARMVFDESPV----KNAASWNGMIAGYAENGRMEEAR 154
Query: 241 WIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
+ + DRN +I T+++ Y + G +E +F +MP R++ ++T++I G +
Sbjct: 155 ALFDEMEDRN-----VITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWN 209
Query: 300 DQSASAIELFMRMQLEG-VVPN 320
A+ LF+ M+ + PN
Sbjct: 210 GFYEDALLLFLEMKRGADITPN 231
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 20/271 (7%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
LL Y+ +D AR LFD+ R+ +S+ +L++G + G++S A ++F++MPE+N VSW
Sbjct: 16 LLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVVSW 75
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
++M+ G EA F M +A IVG + G L+ R + D
Sbjct: 76 TSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRN----GDLEAARMV---FDE 128
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
+ ++ + +I YA+ G +E A ++FD M +R+V +TS++SG + L
Sbjct: 129 SPVK-NAASWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHL 187
Query: 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
F M +V +M I G + L+ L ++ R I P+
Sbjct: 188 FRTMPKRNIVSWTAM--IGGFTWNGFYEDALLLFL----------EMKRGADITPNIETF 235
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHE 399
+L AC G LGK+ L+ LD++
Sbjct: 236 ISLAYACAGLGFHRLGKQLHARLITEGLDND 266
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 162/492 (32%), Positives = 256/492 (52%), Gaps = 59/492 (11%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
I S + +G D F ++ C S G L +++F + + W MI G E
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVV--CFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEF 183
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG-WESYDFV 125
+ +A L++ +L S P+ + +LRACA RLG ES ++
Sbjct: 184 GKFREAVDLFRGLLESGLRPDGFVIVRVLRACA----------------RLGDLESGRWI 227
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
R + + ++R+V TSL++ Y K G + AR +FD M EK+
Sbjct: 228 ----------------DRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDI 271
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V WSAMI GY L +EA+E F M+ RP+ +VGAL++CA LGAL+ G W
Sbjct: 272 VCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGL 331
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
++ + +LGT++ID YAKCG +E A V+ M +D + ++ISGLA + Q +A
Sbjct: 332 MNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAA 391
Query: 306 IELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVD 341
+F +M G+ PNE SMS + + P ++HYGC+VD
Sbjct: 392 FGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVD 451
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LL RAG L+ A +++ MP++ + V G+LL CR+H + L + ++ L+E + G
Sbjct: 452 LLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGH 511
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VLLSNIY+++ +W+ EK+R + + ++K+PG S +EVDGVV EF+ G+ ++ L ++I
Sbjct: 512 YVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKI 571
Query: 462 VLLLFGIDKHLK 473
L + K LK
Sbjct: 572 YEKLESLFKDLK 583
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 159 SLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
S IN ++ + Q I +F K P N ++ MI G V D F A+ + M
Sbjct: 45 STIN-FSNNAQYPIL--VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIV 101
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+ L ACA L G IH+ V + G + D+ + T ++ Y+KCG + A V
Sbjct: 102 PDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKV 161
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGI 329
FD M ++V ++T +I G + A++LF + G+ P+ + + + +
Sbjct: 162 FDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDL 221
Query: 330 EPGVQHYGC---------------LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
E G C LVD+ + G +E A+ V M +E D A++
Sbjct: 222 ESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGM-VEKDIVCWSAMIQG 280
Query: 375 CRVHGDVDLGKETVESLVE 393
+G L +E +E E
Sbjct: 281 YASNG---LPREAIELFFE 296
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/438 (33%), Positives = 236/438 (53%), Gaps = 35/438 (7%)
Query: 30 CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNN 88
C + G++ ++F + R WN MI G+ + A L+++M +R+
Sbjct: 137 CMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIE 196
Query: 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148
F +T+ F + + W +++G YA M+ AR++F+
Sbjct: 197 MIDGFARSGDTETARRFFDDVPSELRNVVTWT---VMVDG----YARNAEMEAAREVFEG 249
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
R+ +W+S+I+GY K G + AR +FD++P +N V+W+++I+GY Q +EALE F
Sbjct: 250 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 309
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268
MQ GF P+ I L+AC+ LG LD G+ IH ++ GI+L+ + ++DMYAKC
Sbjct: 310 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 369
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------- 321
G + A +F+ M +R+ + S+ISG A H QS A+E F RM+ P+E
Sbjct: 370 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 429
Query: 322 ----------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
S E YG+ G++HYGCL+DLLGRAG ++ A +++ MP++P++
Sbjct: 430 SACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPND 489
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVER----SLDHEGVHVLLSNIYASTEQWNGVEKV 421
V GALL ACRVH D+++ VE +V+ S + +VLLSNIYA++++W EK+
Sbjct: 490 VVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKM 549
Query: 422 RRGMEDNEVRKVPGCSLI 439
R M + +K GCS I
Sbjct: 550 RMEMANKGFQKTSGCSSI 567
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 170/406 (41%), Gaps = 81/406 (19%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
K + Q+H T S +L P ++ + FC LS+ W +IR
Sbjct: 26 KPQNERQNHQTQSPSL--PKSLKQGSDFCPGKGTPSLSN---------------WCHLIR 68
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ + P +A +Y + R +L+ACA S + G HA+ I+ G
Sbjct: 69 SYLSQGAPREALLVYTGLRRKGVYLLGVA-PLVLKACASLSIVKHGKALHAESIKNG--- 124
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
V+ DV+ TSL+ YAK G + +R++FD MP
Sbjct: 125 ----------------------------VDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMP 156
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
E+NAV+W+AMI GY+ K A+ F M + + + A G + R
Sbjct: 157 ERNAVTWNAMICGYLGNGDSKSAVLLFEKMSI----RTAVTWIEMIDGFARSGDTETAR- 211
Query: 242 IHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+ D EL +++ T ++D YA+ +E A VF+ MP R+ FA++S+ISG
Sbjct: 212 --RFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKG 269
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
A +F R+ + +V ++ L+ + G E A + +M
Sbjct: 270 NVKEARSIFDRIPVRNLV----------------NWNSLISGYAQNGFSEEALEAFGKMQ 313
Query: 361 ---IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403
EPD + ++L+AC G +D GK+ + ++H+G+ +
Sbjct: 314 AEGFEPDEVTIASVLSACSQLGLLDAGKK-----IHHMMNHKGIKL 354
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 52/339 (15%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+C G++ +F + R WN++I G+A+ +A + +M F
Sbjct: 262 ISGYCKK---GNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFE 318
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P+ T + +L AC+ L G H + G + FVLNGL+ +YA C + AR +
Sbjct: 319 PDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLI 378
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F+ +R+ W S+I+G+A GQ KEAL
Sbjct: 379 FEGMAHRNRACWNSMISGFAIHGQ-------------------------------SKEAL 407
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265
E F M+ P+ + L+ACA G ++ G I + +++ G+ I +ID+
Sbjct: 408 EFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLL 467
Query: 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325
+ G I+ A + MP + +D A+ R+ L+ + + + E
Sbjct: 468 GRAGRIKEAYDLIKRMP-------------VKPNDVVWGALLGACRVHLDMEMADRVVEE 514
Query: 326 IYGIEPGV-----QHYGCLVDLLGRAGMLEAAKKVVREM 359
I ++ + HY L ++ + E A+K+ EM
Sbjct: 515 IVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEM 553
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 251/489 (51%), Gaps = 61/489 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
QIKQ+QSH +G F +++ C+ S GDLS ++F + T WN +IRG
Sbjct: 18 QIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVKIFRHIPKPLTNDWNAIIRG 77
Query: 63 FAEKNEPIKAFALYKQMLRSDFLP-----NNYTFSFILRACADTSCLFVGLICHAQVIRL 117
FA + P AF+ Y+ ML+ + T SF L+ACA C + H Q+ R
Sbjct: 78 FAGSSHPSLAFSWYRSMLQRSSSSALCRVDALTCSFTLKACARALCSSAMVQIHCQISRR 137
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+ + D + T+L++ Y+K+G + A ++F
Sbjct: 138 GFSA-------------------------------DALLCTTLLDAYSKNGDLISALKLF 166
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+M ++ SW+A+I G V + EALE + M++ G R + +V AL AC+ LG +
Sbjct: 167 DEMSVRDVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAALGACSHLGDVK 226
Query: 238 QGRWI-HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISG 295
+G I H Y+ ++ ++I+ A+IDMY+KCG ++ A VF+ + V + ++I+G
Sbjct: 227 EGEKILHGYIKDEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTMITG 286
Query: 296 LANHDQSASAIELFMRMQLEGVVPN-----------------ESMSEIY------GIEPG 332
+ H ++ A+E+F +++ G+ P+ E I+ G+EP
Sbjct: 287 FSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGISIFNNMACNGVEPN 346
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
++HYGC+VDLL RAG L A ++ M + PD + +LL A +H +V++ + +
Sbjct: 347 MKHYGCVVDLLSRAGRLREAHDIICSMSMVPDPVLWQSLLGASEIHNNVEMAEIASRKIK 406
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
E ++++G VLLSN+YA+ +W V VR ME +V+KVPG S IE G + +F + +
Sbjct: 407 EMGVNNDGDFVLLSNVYAAQGRWKDVGLVRDDMESKQVKKVPGISYIEAKGTIHQFHNSD 466
Query: 453 RTNVLMEEI 461
+++ EI
Sbjct: 467 KSHEQWREI 475
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 231/457 (50%), Gaps = 56/457 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G+L+ +FV + T W ++I + + A L+ +M P+ YT +
Sbjct: 342 SKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 401
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
I+ ACA +S L G H+ VI+ G S V N
Sbjct: 402 SIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN------------------------- 436
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+LIN YAK G + AR +F K+P K+ VSW+ MI GY Q L EALE F MQ
Sbjct: 437 ------ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ 490
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
F+P+ + L ACA L ALD+GR IH ++ R G D+ + A++DMYAKCG +
Sbjct: 491 K-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 549
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---------- 322
A +FD +P +D+ ++T +I+G H AI F M++ G+ P+ES
Sbjct: 550 LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACS 609
Query: 323 --------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
M G+EP ++HY C+VDLL R G L A K + MPI+PD +
Sbjct: 610 HSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 669
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G LL+ CR+H DV L ++ E + E D+ +V+L+N+YA E+W V+K+R+ M+
Sbjct: 670 GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKR 729
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
++ PGCS IEV G FV+G + ++I +LL
Sbjct: 730 GFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLL 766
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 196/459 (42%), Gaps = 94/459 (20%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K+ K++ ++ G + V +I + G + + LF L WN+MI
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLIA--AYFKFGGVESAHNLFDELSEPDVVSWNSMI 268
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G ++ QML + T +L ACA+ L +G
Sbjct: 269 NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRA----------- 317
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
LH + C + +V+ +L++ Y+K G ++ A ++F KM
Sbjct: 318 ---------LHGFGVKACF-----------SEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ VSW+++I YV+ L+ +A+ F+ MQ G RP+ + + ACA +LD+GR
Sbjct: 358 GDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGR 417
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H+YV +NG+ ++ + A+I+MYAKCG +E A VF +P +D+ ++ ++I G + +
Sbjct: 418 DVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNL 477
Query: 301 QSASAIELFMRMQLE----------------GVVPNESMSEIYG--IEPGV---QHYGC- 338
A+ELF+ MQ + G+ + EI+G + G H C
Sbjct: 478 LPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACA 537
Query: 339 LVDLLGRAGMLEAAKKVVREMP----------------------------------IEPD 364
LVD+ + G+L A+ + +P IEPD
Sbjct: 538 LVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD 597
Query: 365 NYVLGALLNACRVHGDVDLGKETVESL-----VERSLDH 398
A+LNAC G ++ G + S+ VE L+H
Sbjct: 598 ESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEH 636
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 64/357 (17%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ GDL G ++F + F+WN ++ +A+ ++ +L+K+M + + N YTF+
Sbjct: 141 NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTC 200
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L+ A + H V++LG+ S V+N L+ Y ++ A LFD D
Sbjct: 201 VLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD 260
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V+SW S+ING ++NG+ LE F M +
Sbjct: 261 VVSWNSMING--------------------------CVVNGFSG-----NGLEIFIQMLI 289
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G + +V L ACA +G L GR +H + + +++ ++DMY+KCG +
Sbjct: 290 LGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNG 349
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333
A VF M + + ++TS+I+ + AI LF MQ +GV P +IY + V
Sbjct: 350 ATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRP-----DIYTVTSIV 404
Query: 334 QHYGC----------------------------LVDLLGRAGMLEAAKKVVREMPIE 362
C L+++ + G +E A+ V ++P++
Sbjct: 405 HACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK 461
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 7/205 (3%)
Query: 120 ESYDFVLNG---LLHLYATCNCMDPARKLFDMSVNR----DVISWTSLINGYAKSGQISI 172
+SY+ LN +L L A ++ +++ + ++ D L+ Y G +
Sbjct: 88 KSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQ 147
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
R++FDK+ W+ +++ Y ++ F+E++ F MQ G N L A
Sbjct: 148 GRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAA 207
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
LG + + + +H YV + G + + ++I Y K G +E+A ++FD + DV ++ S+
Sbjct: 208 LGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSM 267
Query: 293 ISGLANHDQSASAIELFMRMQLEGV 317
I+G + S + +E+F++M + GV
Sbjct: 268 INGCVVNGFSGNGLEIFIQMLILGV 292
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 26/214 (12%)
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248
+A IN + ++ + A+E + + L CA +L+ G+ +H+ +
Sbjct: 65 NAKINKFCEMGDLRNAIELLTKSK--SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122
Query: 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
NGI +D LG ++ MY CG + +FD + N VF + L+S A ++ L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182
Query: 309 FMRMQLEGVVPN-----------------ESMSEIYG--IEPGVQHYGCLVDLLGRA--- 346
F +MQ GVV N + ++G ++ G +V+ L A
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242
Query: 347 -GMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
G +E+A + E+ EPD +++N C V+G
Sbjct: 243 FGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 275
>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/479 (30%), Positives = 245/479 (51%), Gaps = 34/479 (7%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQY----RTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
I+G+ ++G LF ++ R WN MI G + A L++ +L
Sbjct: 343 IVGYLENGNVGK---AKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLM 399
Query: 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141
P+++T IL AD +C+ G H+ I G +S FV L+ +Y CN +
Sbjct: 400 EGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIA 459
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQ 197
A+ FD RD +W +LI+GYA+ QI R++ ++M E N +W++++ G V+
Sbjct: 460 AQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVE 519
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
+ A++ FN MQ+ RP+ + L AC+ L + +G+ +HAY R G + D +
Sbjct: 520 NKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHI 579
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
G ++DMYAKCG I+ V++ + N ++ + ++++ A H I +F RM V
Sbjct: 580 GATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRV 639
Query: 318 VPNE-----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
P+ + E Y I P ++HY C+VDLL RAG L+ A +
Sbjct: 640 RPDHVTFLSVLSSCVHAGSIKIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQ 699
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414
+++ MP+E D+ ALL C +H +V LG+ E L+E + G +VLL+N+YAS +
Sbjct: 700 LIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGR 759
Query: 415 WNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
W+ + K R M D ++K PGCS IE V F++ ++++ +EEI +L + K ++
Sbjct: 760 WHDLAKTRELMNDKGMQKSPGCSWIEDRDGVHIFLASDKSHQRVEEIYFMLDNLTKFIR 818
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 174/395 (44%), Gaps = 31/395 (7%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ SH +G F K++ S + + +F + + W ++R
Sbjct: 51 KQLHSHSIKTGFYNHNFVQTKLLQMYSINS--SFEDAWHMFDKMTLKNLHSWTAVLRLHL 108
Query: 65 EKNEPIKAFALYKQML------RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
K F L+++ L + DF + F +L C L +G H V++ G
Sbjct: 109 NMGLFYKGFMLFEEFLCDGLGEKLDF----FVFPVVLNICCGLGDLELGRQVHGMVLKHG 164
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ + +V N L+ +Y C +D A+K+ + +D +SW S+I +G + A + +
Sbjct: 165 FVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLE 224
Query: 179 KMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
M E N V+WSA+I G+ E++E F M G P+ + L AC+ +
Sbjct: 225 NMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMK 284
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
L G+ +H Y+ R+ + + + A++ MY +CG +++A +F + +Y ++I
Sbjct: 285 WLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIV 344
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354
G + A ELF +M+ EGV E + C++ M + A
Sbjct: 345 GYLENGNVGKAKELFYQMEQEGV------------ERDRISWNCMISGHVDNFMFDDALM 392
Query: 355 VVREM---PIEPDNYVLGALLNACRVHGDVDLGKE 386
+ R++ IEPD++ LG++L + GKE
Sbjct: 393 LFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKE 427
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 43/312 (13%)
Query: 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149
T+S IL++ ++ L +G H+ I+ G+ +++FV LL +Y+ + + A +FD
Sbjct: 36 TYSTILQS---SNSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKM 92
Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209
+++ SWT+++ + G +F++ D E L+ F
Sbjct: 93 TLKNLHSWTAVLRLHLNMGLFYKGFMLFEEF----------------LCDGLGEKLDFFV 136
Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
+ + L C LG L+ GR +H V ++G ++ +G A+IDMY KCG
Sbjct: 137 FPVV-------------LNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCG 183
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-ESMSEIYG 328
++ A V + M +D ++ S+I+ + A++L M L + PN + S + G
Sbjct: 184 SLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIG 243
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
+ V+L R M+ A + PD L ++L AC + +GKE
Sbjct: 244 GFSSNAYDVESVELFAR--MVGAG--------VAPDARTLASVLPACSRMKWLFVGKELH 293
Query: 389 ESLVERSLDHEG 400
+V L G
Sbjct: 294 GYIVRHELFSNG 305
>gi|356515150|ref|XP_003526264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Glycine max]
Length = 503
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 256/473 (54%), Gaps = 56/473 (11%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
KQ+KQI S + +G L V S+S + L + T ++N +I
Sbjct: 53 KQMKQIHSLIITNGHLHQHQNVP------SSS------------LSLPWMPTLLYNALIS 94
Query: 62 GFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES 121
+ N KA +++ ML + PN++TF +L+ S L +G H+Q ++ G S
Sbjct: 95 AYHIHNHN-KALSIFTHMLANQAPPNSHTFPPLLK----ISPLPLGATLHSQTLKRGLLS 149
Query: 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
F+L LL LYA + + AR +F+ +++ ++IN ++ +G + A +F++MP
Sbjct: 150 DGFILTTLLALYARNHLLPHARMVFEEFPMFCIVACNAMINAFSMNGDMEAAVALFERMP 209
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQ-----LCGF-RPNHAGIVGALTACAFL-- 233
++ SW+ +++G+ F ++ F M + G +PN A L++CA L
Sbjct: 210 RRDVFSWTTVVDGFALKGNFGASIRFFRNMMNHKDVVAGLVKPNEATCSSVLSSCANLDG 269
Query: 234 -GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
ALD G+ +H YV N ++L + +GT++I +Y K GC+ A +VF M R+V + ++
Sbjct: 270 KAALDWGKQVHGYVVMNEVKLGVFVGTSLIHLYGKMGCLSNAENVFRVMVVREVCTWNAM 329
Query: 293 ISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYG 328
IS LA+H + +A+++F RM+L G+ PN SM +G
Sbjct: 330 ISSLASHGREKNALDMFDRMKLHGLKPNSITFAAVLTACARGNLVREGLDLFRSMWYDFG 389
Query: 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
IEP ++HYGC++DLLGRAG +E A +++R MP +PD VLGA L ACR+HG ++LG+E
Sbjct: 390 IEPNLKHYGCVIDLLGRAGHIEEAAEIIRNMPFQPDASVLGAFLGACRIHGAIELGEEIG 449
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
++++ H G +VLLS++ A E+W+ +RR + + ++K+P S++ +
Sbjct: 450 KNMLRLQTQHSGQYVLLSSMNAEKERWDRAANLRREIMEAGIQKIPAYSMLHL 502
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 241/441 (54%), Gaps = 46/441 (10%)
Query: 83 DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
D P+ + +L ACA G H +R G FV N L+ +YA C +D A
Sbjct: 8 DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN----AVSWSAMINGYVQ- 197
K+FD +DV+SW +++NGY++ G+ A +F+KM E+N VSWSA+I + Q
Sbjct: 68 SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127
Query: 198 ------VDLFKE--------ALEHFNYM--QLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+D+F+E ALE F++M Q +PN I AL ACA L AL GR
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187
Query: 242 IHAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IHAY+ RN + + + +IDMYAK G I+ A VFD++ ++ ++TSL++G H
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHG 247
Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
+ A+E+F M+ G+ P+ SMS+ +G+ PG +HY
Sbjct: 248 RGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY 307
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
C+VDLLGRAG L A +++ M +EP + V ALL+ CR+H +V+LG+ + L+E +
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNS 367
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
+++G + LLSNIYA+ +W V +VR M+++ +RK PGCS ++ F ++T+
Sbjct: 368 ENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHP 427
Query: 457 LMEEIVLLLFGIDKHLKSLCF 477
++I +L + + +K L +
Sbjct: 428 QSKQIYEILRSLTQRIKVLGY 448
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 151/478 (31%), Positives = 251/478 (52%), Gaps = 35/478 (7%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G H + L LQ T + + M+ +A + + +++ + D+ +TF F+
Sbjct: 88 LGHQVHAHMLLRGLQ-PTALVGSKMVAFYASSGDIDSSVSVFNGI--GDY----FTFPFV 140
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L++ + +++G H ++R+G + +V L+ LY C ++ A K+FD RDV
Sbjct: 141 LKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDV 200
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM--Q 212
SW +L+ GY KSG I A +F++MP +N VSW+ MI+GY Q L ++AL F+ M +
Sbjct: 201 SSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKE 260
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G RPN I+ L ACA L L++GR IH R G+ + + A+ MYAKCG +
Sbjct: 261 DSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLV 320
Query: 273 TACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------- 321
A + FD + +++ A+ ++I+ A++ A+ F M G+ P++
Sbjct: 321 DARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSG 380
Query: 322 ---------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
MS Y I P V+HY C+ DLLGRAG L A K+V EMP+
Sbjct: 381 CSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPS 440
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ G+LL ACR H ++++ + L ++ G +VLLSN+YA +W V+K+R ++
Sbjct: 441 IWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVK 500
Query: 427 DNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+K PGCS IE++G F+ G+ ++ +EI + L + + +K+ +F D + V
Sbjct: 501 SQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYV 558
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 229/467 (49%), Gaps = 58/467 (12%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
I QIQ+ L + P I C + L + F + FI N++IR
Sbjct: 27 HIPQIQAQLILQNLHSHPLIAHHFINTCHHLHL--LGSAFLFFTHIPKPHVFICNSLIRA 84
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F+ P LY M R+ PNNYTF F+L++ AD L G H V++ G S
Sbjct: 85 FSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASD 144
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+V N L+ +YA+C G++ + +++FD+M
Sbjct: 145 LYVQNTLMDVYASC-------------------------------GKMGLCKKVFDEMLH 173
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
+ VSW+ +I GY + +AL F MQ G PN IV AL ACA GA++ G WI
Sbjct: 174 TDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWI 233
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H +V E+D++LGTA+IDMY KCG I+ A +VF +M ++V+ + I+GLA+
Sbjct: 234 HEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCG 293
Query: 303 ASAIELFMRMQLEGVVPNE-----------------SMSEI--------YGIEPGVQHYG 337
AI F RM EGV ++ S +I +G PG++HY
Sbjct: 294 EEAIAWFKRMDEEGVEADDVTLVAVLSACSHSGLVNSGRQIFWSLIHGRFGFSPGIKHYS 353
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VD+L R G +E A ++ +MP E + G+LL R HG +++ + LVE +
Sbjct: 354 CMVDILARNGCIEEACVMINDMPFEATRSMWGSLLTGSRAHGSLEVSEIAARKLVEMEPE 413
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGV 444
+ G +V+LSNIYA +W+ VEKVR M++ ++K G S +E+ V
Sbjct: 414 NGGYYVVLSNIYAEMGKWSEVEKVREIMKERGLKKDLGSSSVELQEV 460
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 168/518 (32%), Positives = 265/518 (51%), Gaps = 84/518 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
+ Q+KQ+ + + + P F +I+ F S + DL + +R+F ++ +F+WN
Sbjct: 39 ISQLKQLHAQTIRTTSSHHPNTFFLYSRILHF---SSLHDLRYAFRVFHQIENPNSFMWN 95
Query: 58 TMIRGFAEKNEPIK-AFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+IR A + + A ALY +ML + + + +TF F+L+ACA L G HAQ++
Sbjct: 96 ALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQIL 155
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+LG++S ++ N L+H Y A ++ A+
Sbjct: 156 KLGFDSDVYINNSLVHFY-------------------------------ATCDRLDFAKG 184
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+M E++ VSW+ +I+ +V+ F AL F MQ F P+ I ACA +G+
Sbjct: 185 VFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGS 243
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L G I D++L T+++DMY KCG +E A +F MP RDV ++ S+I G
Sbjct: 244 LSLG-----------IVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILG 292
Query: 296 LANHDQSASAIELFMRM-QLEGVVPN------------------------ESMSEIYGIE 330
+ H + A+A+E F M + E ++PN + M Y I+
Sbjct: 293 FSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIK 352
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P ++HYGCLVDLL RAG+++ A VV MP+ PD + +LL+AC + G E E
Sbjct: 353 PELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDAC---CKQNAGVELSEE 409
Query: 391 LVERSLDHEG-----VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445
+ R L+ EG V+VLLS +YAS +WN V VR+ M D V K PGCS IE+DGV
Sbjct: 410 MARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVA 469
Query: 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNE 483
EF +G+ ++ EEI L I++ ++ + + D ++
Sbjct: 470 HEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQ 507
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 260/499 (52%), Gaps = 51/499 (10%)
Query: 5 KQIQSHLTVSGTLWDPF-----AVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWN 57
+Q+ + V+G + P A+ + G CS SH +LF + ++ + +
Sbjct: 40 QQLHATAIVTGLISSPNHFLRNALLHLYGSCSLP-----SHARKLFDEIPQSHKDSVDYT 94
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA-----DTSCLFVGLICHA 112
+IR P ++ L+ QM + D + L ACA DT VG H
Sbjct: 95 ALIR----HCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLGGGDTK---VGSQMHV 147
Query: 113 QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172
V++ G+ +D V N L+++Y + ARK+F+ R V+SW+ + G K +
Sbjct: 148 GVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVES 207
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACA 231
R +FD+MPE+N V+W+ MI GYV KEA M CGFR + + L+AC+
Sbjct: 208 GRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACS 267
Query: 232 FLGALDQGRWIHAY-VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
G + GRW+H Y V G++ +++GT+++DMYAKCG I A SVF SM R+V A+
Sbjct: 268 QSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWN 327
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEI 326
+++ GLA H A+++F M +E V P+ + +
Sbjct: 328 AMLGGLAMHGMGKIAVDMFPSM-VEEVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPV 386
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I+P ++HY C+V LLGRAG LE A+ +V+ M I P+ VLG+L+ +C HG + LG++
Sbjct: 387 YRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEK 446
Query: 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVC 446
+ L+E + H++LSN+YA + + +R+ ++ ++KVPG S I VDG +
Sbjct: 447 IMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLH 506
Query: 447 EFVSGERTNVLMEEIVLLL 465
+F++G++++ EI + L
Sbjct: 507 QFIAGDKSHTRTSEIYMKL 525
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 160/515 (31%), Positives = 247/515 (47%), Gaps = 90/515 (17%)
Query: 25 KIIGFCSASDIGDLSHGYRLFVCLQYR-TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD 83
K I C + H LF +R TF+ N+MI+ + AF LYK + R
Sbjct: 39 KFITTCG--QLSSTRHARHLFDNRSHRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRRET 96
Query: 84 -FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPA 142
F+P+N+TF+ + + CA ++ GL H V+++G+ +V L+ +YA + A
Sbjct: 97 CFVPDNFTFTVLAKCCALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLA 156
Query: 143 RKLFDMSVNRDVISWTS-------------------------------LINGYAKSGQIS 171
RK+F+ +R ++SWT+ LI+GY K G +
Sbjct: 157 RKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGRDSAAFNLLIDGYVKVGDME 216
Query: 172 IARQMFDK-------------------------------MPEKNAVSWSAMINGYVQVDL 200
AR +FD+ MPEKN VSW+AMI GY Q
Sbjct: 217 SARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQ 276
Query: 201 FKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259
EAL+ F +Q F PN +V L A A LGAL+ G W+H +V R ++ + + T
Sbjct: 277 PHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCT 336
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
+++DMY KCG I A VF +P ++ + +LI+G A + ++ A+E F MQ EG+ P
Sbjct: 337 SLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKP 396
Query: 320 NE-SMSEIY----------------------GIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356
N+ +M+ + G+ P ++HYGCLVDLLGRAG L+ A+ ++
Sbjct: 397 NDITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGRAGCLDEAENLI 456
Query: 357 REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416
+ MP E + +L + AC DV + + V + G++V++ N+YA E+W
Sbjct: 457 KSMPFEANGIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWK 516
Query: 417 GVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
V+++ M +K G S IEVD V EF+SG
Sbjct: 517 DVKEINGLMRRRGAKKEVGSSAIEVDSRVSEFISG 551
>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
Length = 544
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 250/457 (54%), Gaps = 62/457 (13%)
Query: 87 NNYTFSFILRACADTSCLFVGLI-CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
N ++F F+LR + ++ L HA +++LG + Y V N L+ YA +D AR++
Sbjct: 7 NQHSFLFLLREASASAAARRRLPPLHALLVKLGLQPYARVHNALIQAYAASGLVDDARRV 66
Query: 146 FDMSVNRDVIS-------------------------------WTSLINGYAKSGQISIAR 174
FD +RD +S WTS++ G ++G ++ AR
Sbjct: 67 FDGMSHRDTVSFNSMIHAHAMSGDVVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAAR 126
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++F++MP ++ VSW+AM++G EAL F M GF PN ++ AL ACA G
Sbjct: 127 RLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAG 186
Query: 235 ALDQGRWIHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
AL+ G+WIHA+V+R + D LGTA++DMYAKCG +E A VF + +R+ + ++
Sbjct: 187 ALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAM 246
Query: 293 ISGLANHDQSASAIELFMRMQLE-GVVPNE------------------------SMSEIY 327
I+GLA + SA A+++F +M+L+ VVP+E + + Y
Sbjct: 247 INGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKY 306
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
GI ++HY C+VDLL R+G L+ A K++ MP++PD V ALL CR+H DV + ET
Sbjct: 307 GIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMA-ET 365
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
S +E + G HVLLSN+YA+ +W+GVE VRR M + K+PGCS IE++ + E
Sbjct: 366 AISEMEATCS--GDHVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHE 423
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
FVSG++++ +I L I ++ + + EV
Sbjct: 424 FVSGDKSHPSYNDIHAKLAEISARMQQQGYVTETAEV 460
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 119/280 (42%), Gaps = 41/280 (14%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ G C A GD++ RLF + R WN M+ G A P++A L+++M+ F
Sbjct: 113 VAGLCRA---GDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFA 169
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLG----WESYDFVLNGLLHLYATCNCMDP 141
PN T L ACA L G HA V R W+ +F+ LL +YA C ++
Sbjct: 170 PNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWD--EFLGTALLDMYAKCGAVEL 227
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
A +F +R+ +W ++ING A +G + A MF KM V
Sbjct: 228 ALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVV-------------- 273
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTA 260
P+ VG L AC+ G +D GR H + GI L +
Sbjct: 274 ----------------PDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYAC 317
Query: 261 IIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLANH 299
++D+ A+ G ++ A + MP + D + +L+ G H
Sbjct: 318 MVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLH 357
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 162/477 (33%), Positives = 236/477 (49%), Gaps = 39/477 (8%)
Query: 28 GFCSASDIGDL----------SHGYRL-FVCLQYRTTFIWNTMIRGFAEKNEPIKAFALY 76
GFCS +G+ S G RL F + +R W +M + +A +
Sbjct: 108 GFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAF 167
Query: 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136
++M + PN+ T S IL AC D L G H V+R G FV + L+++YA+C
Sbjct: 168 RKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASC 227
Query: 137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMI 192
+ A+ +FD RD +SW LI Y + + +F +M + N SW+A+I
Sbjct: 228 LSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVI 287
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252
G +Q ++ALE + MQ GF+PN I L AC L +L G+ IH Y+ R+
Sbjct: 288 GGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFF 347
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312
D+ TA++ MYAKCG +E + VF M RD ++ ++I + H A+ LF M
Sbjct: 348 QDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREM 407
Query: 313 QLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
GV PN +SMS + +EP H+ C+VD+L RAG
Sbjct: 408 VDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGR 467
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408
LE A + +++MPIEP GALL CRV+ +V+LG+ L E D+ G +VLLSNI
Sbjct: 468 LEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNI 527
Query: 409 YASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
S + W+ + R+ M D V K PGCS I+V V FV G+++N +EI L
Sbjct: 528 LVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFL 584
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 147/348 (42%), Gaps = 49/348 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTF 91
S+ GDL LF + W +I + ++A Y + + P+
Sbjct: 22 SNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLL 81
Query: 92 SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
+ +ACA + H IR G+ S + N L+ +Y C C + AR +F+
Sbjct: 82 LSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPF 141
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
RDVISWTS M + YV L +EAL F M
Sbjct: 142 RDVISWTS-------------------------------MASCYVNCGLLREALGAFRKM 170
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
L G RPN + L AC L L GR +H +V RNG+ ++ + +A+++MYA C I
Sbjct: 171 GLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSI 230
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-ESMSEIYGIE 330
A VFDSM RD ++ LI+ + + + +F RM EGV N S + + G
Sbjct: 231 RQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIG-- 288
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNAC 375
GC+ + G E A +V+ M +P+ + ++L AC
Sbjct: 289 ------GCMQN-----GRTEKALEVLSRMQNSGFKPNQITITSVLPAC 325
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 1/162 (0%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN-YMQLCGFRP 218
I Y+ SG + AR +FDK+P+ + +W+ +I+ + EA++++N + P
Sbjct: 17 FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76
Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
+ ++ ACA L + + +H R G D++LG A+IDMY KC C E A VF
Sbjct: 77 DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
+ MP RDV ++TS+ S N A+ F +M L G PN
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPN 178
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/492 (31%), Positives = 249/492 (50%), Gaps = 57/492 (11%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
+ S + +G WD F ++ C S G L+ ++F + + W +I G+ E
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLV--CLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIE 180
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+A L++ +L P+++T IL AC+ L G W
Sbjct: 181 SGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGR----------W------ 224
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
++G + + +V TSL++ YAK G + AR++FD M EK+
Sbjct: 225 IDGYMRESGSVG---------------NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDV 269
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
V WSA+I GY + KEAL+ F MQ RP+ +VG +AC+ LGAL+ G W
Sbjct: 270 VCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGL 329
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
+D + + +LGTA+ID YAKCG + A VF M +D + ++ISGLA +A
Sbjct: 330 MDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAA 389
Query: 306 IELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVD 341
+F +M G+ P+ MS ++ + P ++HYGC+VD
Sbjct: 390 FGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVD 449
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
L RAG+L A+ ++R MP+E ++ V GALL CR+H D L + ++ L+E + G
Sbjct: 450 LQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGH 509
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VLLSNIY+++ +W+ EK+R + ++K+PGCS +EVDGVV EF+ G+ ++ L +I
Sbjct: 510 YVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKI 569
Query: 462 VLLLFGIDKHLK 473
L + K L+
Sbjct: 570 YEKLESLFKDLR 581
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 143/444 (32%), Positives = 231/444 (52%), Gaps = 28/444 (6%)
Query: 19 DPFAVGKII-GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
D F++ +I G+ S G ++ R+F +WN+MI G+ NE ++A L+
Sbjct: 238 DAFSLSALISGYASC---GRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFN 294
Query: 78 QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137
M R + TF+ +L AC+ + G+ HA V ++G+ + + + L+ +Y+ C
Sbjct: 295 NMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCR 354
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
D A KLF D I S+I Y+ G+I ARQ+FD MP K+ +SW++MI G+ Q
Sbjct: 355 RPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQ 414
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
EAL+ F M G R + + G ++ACA + +L+ G I A G+E D I+
Sbjct: 415 NACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQII 474
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
T+++D Y KCG +E +FD M D + S++ G A + A+ +F +M+ GV
Sbjct: 475 STSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGV 534
Query: 318 VPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
P + +M Y I PG++HY C+VDL RAG+LE A
Sbjct: 535 QPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAM 594
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
++ +MP++ D + ++L C HG+ LGK+ + +++ ++ G +V LS IYA+ E
Sbjct: 595 NLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFE 654
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCS 437
W +VR+ M D ++ KVPGCS
Sbjct: 655 DWGRSAQVRKLMYDKKIPKVPGCS 678
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 182/355 (51%), Gaps = 18/355 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD---FLPNNYTFS 92
G+L RLF + ++ WN+MI G+A P +A L+K + + F + + +
Sbjct: 118 GNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLA 177
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVN 151
++ AC + L G HA+++ E +D VL + L++LY C +D A + ++
Sbjct: 178 TVVGACTNLGALDCGKQIHARIVVDEVE-FDSVLGSSLVNLYGKCGDIDSANHVLNLMKE 236
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
D S ++LI+GYA G+++ AR++F V W++MI+GYV + EALE FN M
Sbjct: 237 PDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNM 296
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ G + +++ L+AC+ LG +DQG +HA+V + G DII+ +A++DMY+KC
Sbjct: 297 RRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRP 356
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331
+ AC +F + D S+I+ +N + A ++F M P++S+ +
Sbjct: 357 DDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTM------PSKSLISWNSMIV 410
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
G C ++ L + ++ + D + L +++AC ++LG++
Sbjct: 411 GFSQNACPIEALDLFCEMN-------KLGLRMDKFSLAGVISACASISSLELGEQ 458
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 58/330 (17%)
Query: 95 LRACADTSCLFVGLICHAQVIRLG-WESYDFVLNGLLHLYATCNCMDPARKLF------- 146
L +C + ++ G + H ++ G S + N LL +Y+ CN M A++LF
Sbjct: 13 LGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRN 72
Query: 147 ------------------------DMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
D ++D SW +I+G+AK G + +AR++F++MP
Sbjct: 73 CFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPW 132
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQL------CGFRPNHAGIVGALTACAFLGAL 236
KN ++W++MI+GY KEA+ F + L CG A +VG AC LGAL
Sbjct: 133 KNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG---ACTNLGAL 189
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D G+ IHA + + +E D +LG++++++Y KCG I++A V + M D F+ ++LISG
Sbjct: 190 DCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGY 249
Query: 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK--K 354
A+ + A +F VV SM Y + LEA +
Sbjct: 250 ASCGRMNDARRIFCLKSNACVVLWNSMISGY---------------VANNEALEALELFN 294
Query: 355 VVREMPIEPDNYVLGALLNACRVHGDVDLG 384
+R ++ D ++L+AC G +D G
Sbjct: 295 NMRRKGVQEDYSTFASVLSACSTLGIIDQG 324
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 54/213 (25%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRD 285
L +C G++ +GR +H ++G+ ++ +G ++ MY++C + A +F+ MP R+
Sbjct: 13 LGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRN 72
Query: 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR 345
F++ ++I G ++ELF M + + ++ +
Sbjct: 73 CFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFS----------------WNVVISGFAK 116
Query: 346 AGMLEAAKKVVREMP-------------------------------IEP------DNYVL 368
G LE A+++ EMP + P D +VL
Sbjct: 117 EGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVL 176
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
++ AC G +D GK+ +V ++ + V
Sbjct: 177 ATVVGACTNLGALDCGKQIHARIVVDEVEFDSV 209
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 226/430 (52%), Gaps = 55/430 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G LS F + R T WNT+I GF + +E +A ++++ML P+ T +L
Sbjct: 271 GCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVL 330
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L G+ H+ + D + D I
Sbjct: 331 SACAQLGELRKGMHVHSYIK-------------------------------DNGICCDNI 359
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SLIN YAK G ++ A ++F M +K+ VSW+ M+ GYV+ F A F M++
Sbjct: 360 LTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAE 419
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ +V L+AC+ LGALD+GR IH+Y++ + D+ L +A++DMYAKCGCI+TA
Sbjct: 420 VVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTAS 479
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVP--------------- 319
+F M ++ ++ ++I GLA++ A+ELF +M +L+ P
Sbjct: 480 EIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHV 539
Query: 320 ---NESMSEIY-----GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+E + Y G+ P +HYGC+VDLLGRAGML+ A +++MPIEP+ + G+L
Sbjct: 540 GMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSL 599
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACRVH +DLGK + +V + + GVHVL+SN++A QW+ VE VR M +
Sbjct: 600 LAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIE 659
Query: 432 KVPGCSLIEV 441
K PG S ++V
Sbjct: 660 KTPGHSSVQV 669
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 158/320 (49%), Gaps = 40/320 (12%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+ +++HLT D F G++I S + D+ + ++F + F+WN MIRG+
Sbjct: 39 RLVRAHLTS-----DSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGY 93
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL---FVGLICHAQVIRLGWE 120
+ P A A++++M R P+NYT + ++ A A + L G HA V R+G+
Sbjct: 94 SSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFT 153
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV++GL +N Y + A ++F++M
Sbjct: 154 SDVFVMSGL-------------------------------VNYYGAFRSVKEASKVFEEM 182
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E++ VSW++MI+ Q + + L+ + MQ G PN I+ L+AC A+D+GR
Sbjct: 183 YERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGR 242
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W++ V + GIE D+ + A+I MY KCGC+ A F +MP R ++ +LI G +
Sbjct: 243 WVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNH 302
Query: 301 QSASAIELFMRMQLEGVVPN 320
+ A+ +F M L GV P+
Sbjct: 303 EHKEALRIFEEMLLHGVTPD 322
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 226/430 (52%), Gaps = 55/430 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G LS F + R T WNT+I GF + +E +A ++++ML P+ T +L
Sbjct: 271 GCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVL 330
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA L G+ H+ + D + D I
Sbjct: 331 SACAQLGELRKGMHVHSYIK-------------------------------DNGICCDNI 359
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SLIN YAK G ++ A ++F M +K+ VSW+ M+ GYV+ F A F M++
Sbjct: 360 LTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAE 419
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+ +V L+AC+ LGALD+GR IH+Y++ + D+ L +A++DMYAKCGCI+TA
Sbjct: 420 VVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTAS 479
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVP--------------- 319
+F M ++ ++ ++I GLA++ A+ELF +M +L+ P
Sbjct: 480 EIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHV 539
Query: 320 ---NESMSEIY-----GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+E + Y G+ P +HYGC+VDLLGRAGML+ A +++MPIEP+ + G+L
Sbjct: 540 GMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSL 599
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACRVH +DLGK + +V + + GVHVL+SN++A QW+ VE VR M +
Sbjct: 600 LAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIE 659
Query: 432 KVPGCSLIEV 441
K PG S ++V
Sbjct: 660 KTPGHSSVQV 669
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 159/320 (49%), Gaps = 40/320 (12%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGF-CSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
+ +++HLT D F G++I S + D+ + ++F + F+WN MIRG+
Sbjct: 39 RLVRAHLTS-----DSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGY 93
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL---FVGLICHAQVIRLGWE 120
+ P A A++++M R P+NYT + ++ A A + L G HA V R+G+
Sbjct: 94 SSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFT 153
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S FV++GL++ Y ++ A K +F++M
Sbjct: 154 SDVFVMSGLVNYYGAFRSVEEASK-------------------------------VFEEM 182
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
E++ VSW++MI+ Q + + L+ + MQ G PN I+ L+AC A+D+GR
Sbjct: 183 YERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGR 242
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W++ V + GIE D+ + A+I MY KCGC+ A F +MP R ++ +LI G +
Sbjct: 243 WVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNH 302
Query: 301 QSASAIELFMRMQLEGVVPN 320
+ A+ +F M L GV P+
Sbjct: 303 EHKEALRIFEEMLLHGVTPD 322
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 242/474 (51%), Gaps = 55/474 (11%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
IG + G R+F R WN ++ GF + ++ QML F PN YTF I
Sbjct: 479 IGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISI 538
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
LR+C+ S + +G HAQ+++ + DFV
Sbjct: 539 LRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV----------------------------- 569
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
T+L++ YAK+ + A +F+++ +++ +W+ ++ GY Q ++A++ F MQ
Sbjct: 570 --GTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQRE 627
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G +PN + +L+ C+ + LD GR +H+ + G D+ + +A++DMYAKCGC+E A
Sbjct: 628 GVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 687
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
VFD + +RD ++ ++I G + H Q A++ F M EG VP+E
Sbjct: 688 EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHM 747
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
S+S+IYGI P ++HY C+VD+LGRAG + + EM + + +
Sbjct: 748 GLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWET 807
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
+L AC++HG+++ G+ L E + + ++LLSN++A+ W+ V VR M V
Sbjct: 808 VLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGV 867
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+K PGCS +EV+G V F+S + ++ + EI L L + + L S+ + + + V
Sbjct: 868 KKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHV 921
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 103/418 (24%), Positives = 177/418 (42%), Gaps = 78/418 (18%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
KQ+ + G D F ++ + G++ R+F+C+ + WN ++ GFA
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDL--YAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ + K L+ +M S+ + +T S +L+ CA++ L G I H+ IR+G E +F
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF 366
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ L+ +Y+ C A K+F + DV+SW+++I + GQ
Sbjct: 367 ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQS-------------- 412
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
+EA E F M+ G PN + ++A LG L G IHA
Sbjct: 413 -----------------REAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHA 455
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
V + G E D + A++ MY K G ++ C VF++ NRD+ ++ +L+SG +++ +
Sbjct: 456 CVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDT 515
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
+ +F +M EG PN
Sbjct: 516 GLRIFNQMLAEGFNPNM------------------------------------------- 532
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLD-HEGVHVLLSNIYASTEQWNGVEKV 421
Y ++L +C DVDLGK+ +V+ SLD ++ V L ++YA E +
Sbjct: 533 -YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETI 589
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 161/346 (46%), Gaps = 54/346 (15%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G ++FV ++ W+ +I +K + +A ++K+M S +PN +T +
Sbjct: 376 SKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLA 435
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
++ A D L+ G HA V + G+E + V N L+ +Y
Sbjct: 436 SLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYM------------------ 477
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
K G + ++F+ ++ +SW+A+++G+ + L FN M
Sbjct: 478 -------------KIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQML 524
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
GF PN + L +C+ L +D G+ +HA + +N ++ + +GTA++DMYAK +E
Sbjct: 525 AEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLE 584
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMS 324
A ++F+ + RD+FA+T +++G A Q A++ F++MQ EGV PNE S
Sbjct: 585 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 644
Query: 325 EIYGIEPGVQHY---------------GCLVDLLGRAGMLEAAKKV 355
I ++ G Q + LVD+ + G +E A+ V
Sbjct: 645 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVV 690
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 142/336 (42%), Gaps = 64/336 (19%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+S +LR CA L G H QVI+ G +
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSG-------------------------------I 159
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
N D W SL+N YAK G + A ++F ++PE++ VSW+A+I G+V A+ F
Sbjct: 160 NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270
M+ G N AL AC+ L+ G+ +HA + G D+ +G+A++D+YAKCG
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGE 279
Query: 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
+ A VF MP ++ ++ +L++G A + + LF RM G N S + +
Sbjct: 280 MVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMT--GSEINFSKFTLSTVL 337
Query: 331 PGVQHYG-------------------------CLVDLLGRAGMLEAAKKVVREMPIEPDN 365
G + G CLVD+ + G+ A KV + +PD
Sbjct: 338 KGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDV 396
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
A++ G +E E V + + H GV
Sbjct: 397 VSWSAIITCLDQKGQ---SREAAE--VFKRMRHSGV 427
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 239/485 (49%), Gaps = 89/485 (18%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN +I+ + P +A Y +M R F +N+TF +L+A + S +G H Q +
Sbjct: 22 WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81
Query: 116 RLGWESYDFV-------------------------------LNGLLHLYATCNCMDPARK 144
+ G+ + FV N +L YA+C MD A K
Sbjct: 82 KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK------------------------- 179
LFD +D+ S+ +I+GYAK G+ + AR +FD+
Sbjct: 142 LFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 201
Query: 180 ------MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
MP+KN ++W+ MI+GY+ L+ EA++ F+ M+ +H + L+ACA L
Sbjct: 202 RNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHL 261
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
G L +G +H Y + + + T++IDMYAKCG I+ + VF +D++ + ++I
Sbjct: 262 GWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAII 321
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
SGLA H +A++L +M+ GV P+E M + +G+
Sbjct: 322 SGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGL 381
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P ++HYGC+VDLLGRAG L+ A ++++ MP EP +LGALL AC +H D++ G E V
Sbjct: 382 PPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETG-EKVI 440
Query: 390 SLVERSLDH--EGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
+L+ H +G ++ N+YAS QW + R M ++ + K G S IEVDG
Sbjct: 441 NLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIEVDGKFYR 500
Query: 448 FVSGE 452
F++G+
Sbjct: 501 FLAGD 505
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 104/253 (41%), Gaps = 36/253 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+++GD+ + LF + + WNTMI G+ +A L+ +M + ++ T +
Sbjct: 193 TNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVT 252
Query: 93 FILRACADTSCLFVGLICH--AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
+L ACA L G H AQ RL S V L+ +YA C + + ++F S
Sbjct: 253 LVLSACAHLGWLGKGTEMHVYAQDHRLA--SSPHVATSLIDMYAKCGTIQRSLEVFYKSQ 310
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+D+ W ++I+G A G A ++ DKM +
Sbjct: 311 VKDIYCWNAIISGLALHGYGHAAVKLLDKMRDN--------------------------- 343
Query: 211 MQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
G RP+ +G L+AC+ + +G R G+ + ++D+ + G
Sbjct: 344 ----GVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAG 399
Query: 270 CIETACSVFDSMP 282
++ A + +MP
Sbjct: 400 FLDPAFQLIKAMP 412
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 160/493 (32%), Positives = 250/493 (50%), Gaps = 57/493 (11%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
++ S + +G D F +I + G + + +++F + + W I G+
Sbjct: 129 KMHSLVVKAGCEADAFVKISLINL--YTKCGFIDNAFKVFDDIPDKNFASWTATISGYVG 186
Query: 66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
+ +A +++++L P++++ +L AC T L G W
Sbjct: 187 VGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG----------EWIDEYIT 236
Query: 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
NG++ R+V T+L++ Y K G + AR +FD M EKN
Sbjct: 237 ENGMV---------------------RNVFVATALVDFYGKCGNMERARSVFDGMLEKNI 275
Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
VSWS+MI GY L KEAL+ F M G +P+ +VG L +CA LGAL+ G W
Sbjct: 276 VSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNL 335
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
++ N + +LGTA+IDMYAKCG ++ A VF M +D + + ISGLA A
Sbjct: 336 INGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDA 395
Query: 306 IELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVD 341
+ LF +M+ G+ P+ SM ++ + P ++HYGC+VD
Sbjct: 396 LGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVD 455
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG L+ A ++++ MP+E + V GALL CR+H D L + ++ L+ H G
Sbjct: 456 LLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGN 515
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VLLSNIYA++ +W K+R M + V+K+PG S IEVDGVV +F+ G+ ++ L E+I
Sbjct: 516 YVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKI 575
Query: 462 VLLLFGIDKHLKS 474
L + K LK+
Sbjct: 576 YAKLGELAKDLKA 588
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 167/320 (52%), Gaps = 33/320 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+K +K I + L G D + + K++ F + + G+ ++ +R+ + F++NTMI
Sbjct: 23 LKHLKHIHAALLRLGLDEDTYLLNKVLRF--SFNFGNTNYSFRILDQTKEPNIFLFNTMI 80
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + ++ +Y M + P+++TF F+L+ACA +G+ H+ V++ G E
Sbjct: 81 RGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCE 140
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ FV SLIN Y K G I A ++FD +
Sbjct: 141 ADAFVK-------------------------------ISLINLYTKCGFIDNAFKVFDDI 169
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
P+KN SW+A I+GYV V +EA++ F + G RP+ +V L+AC G L G
Sbjct: 170 PDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGE 229
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
WI Y+ NG+ ++ + TA++D Y KCG +E A SVFD M +++ +++S+I G A++
Sbjct: 230 WIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNG 289
Query: 301 QSASAIELFMRMQLEGVVPN 320
A++LF +M EG+ P+
Sbjct: 290 LPKEALDLFFKMLNEGLKPD 309
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G + + ++ D+ E N ++ MI G V D F+E++E ++ M+ G P+ L
Sbjct: 56 GNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVL 115
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
ACA + + G +H+ V + G E D + ++I++Y KCG I+ A VFD +P+++
Sbjct: 116 KACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFA 175
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEI------------------YG 328
++T+ ISG + AI++F R+ G+ P+ S+ E+ Y
Sbjct: 176 SWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYI 235
Query: 329 IEPGVQH----YGCLVDLLGRAGMLEAAKKVVREM------------------------- 359
E G+ LVD G+ G +E A+ V M
Sbjct: 236 TENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEAL 295
Query: 360 ---------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGVHVLLSNI 408
++PD Y + +L +C G ++LG + +L+ + LD+ + L ++
Sbjct: 296 DLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDM 354
Query: 409 YASTEQWNGVEKVRRGMEDNE 429
YA + + +V RGM +
Sbjct: 355 YAKCGRMDRAWEVFRGMRKKD 375
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 118/301 (39%), Gaps = 71/301 (23%)
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L + IHA + R G++ D L ++ G + + D ++F + ++I G
Sbjct: 23 LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82
Query: 296 LANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHY------GC--- 338
L +D +IE++ M+ EG+ P+ ++ + + E GV+ + GC
Sbjct: 83 LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142
Query: 339 ------LVDLLGRAGMLEAAKKVVREMP-------------------------------- 360
L++L + G ++ A KV ++P
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202
Query: 361 --IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL-DHEGVHVLLSNIYASTEQWNG 417
+ PD++ L +L+AC+ GD+ G+ E + E + + V L + Y
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMER 262
Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG-IDKHLKSLC 476
V GM + + V S+I+ G +N L +E + L F +++ LK C
Sbjct: 263 ARSVFDGMLEKNI--VSWSSMIQ----------GYASNGLPKEALDLFFKMLNEGLKPDC 310
Query: 477 F 477
+
Sbjct: 311 Y 311
>gi|414884311|tpg|DAA60325.1| TPA: hypothetical protein ZEAMMB73_267423 [Zea mays]
Length = 460
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 222/401 (55%), Gaps = 17/401 (4%)
Query: 59 MIRGFAEKNEPIKA-FALYKQMLRSDFLPNNYTFSFILRACADTSC--LFVGLICHAQVI 115
+I ++ P A L++ LR P ++ + A A L + L HA +
Sbjct: 51 LIVAYSRLERPFPAVLLLFRSCLRRSLAPTRHSLPLAISAAASAGLRHLPLALSLHAVAV 110
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSGQISIAR 174
+ V N L+ LYA + AR++F+ M DV+S+ +L++ Y +G +++AR
Sbjct: 111 YRNLLPFQHVANALVSLYARHTRLGDARRVFEEMPSAPDVVSYNTLMHAYVNTGSVAVAR 170
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++F+ MP ++A SW +I G + +EA+ F+ M GFRP+ + L+ CA LG
Sbjct: 171 EVFEGMPVRDATSWGTVIAGSAKAGQLEEAMALFDRMLEEGFRPDDVALAAVLSCCAQLG 230
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
ALD+GR +H V + ++ L T ++D+YAKCGC+E A +F++ +R+V+ + +LI
Sbjct: 231 ALDKGREVHGLVKLSRPRPNVFLCTGLVDLYAKCGCVEAAREMFEACQDRNVYTWNALIV 290
Query: 295 GLANHDQSASAIELFMRMQLEGVVPN-------------ESMSEIYGIEPGVQHYGCLVD 341
GLA + A+E F RM +G+ P+ M ++ + ++HYGC+ D
Sbjct: 291 GLAMYGHGTVALEYFHRMVADGIRPDGHAGLVDLARRIFHDMESVHNVPRELKHYGCMAD 350
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG++E A +VR+MP+E DNYV G +L CR+HG+V+ + L++ + D GV
Sbjct: 351 LLGRAGLIEEAMNMVRKMPMEGDNYVWGGILAGCRMHGNVEAAELAARHLLQLNPDDSGV 410
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442
+ ++ IYA+ +W V ++R+ M++ VR+ CS I +
Sbjct: 411 YSAMAGIYAAAGRWEDVVRIRKLMDERIVRRNVACSSITTE 451
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 129/303 (42%), Gaps = 53/303 (17%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
+ G ++ +F + R W T+I G A+ + +A AL+ +ML F P++ +
Sbjct: 162 NTGSVAVAREVFEGMPVRDATSWGTVIAGSAKAGQLEEAMALFDRMLEEGFRPDDVALAA 221
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L CA L G H V F+ GL+ LYA C C++ AR++F+ +R+
Sbjct: 222 VLSCCAQLGALDKGREVHGLVKLSRPRPNVFLCTGLVDLYAKCGCVEAAREMFEACQDRN 281
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
V +W +LI G A G ++ ALE+F+ M
Sbjct: 282 VYTWNALIVGLAMYGHGTV-------------------------------ALEYFHRMVA 310
Query: 214 CGFRPN-HAGIVGALTACAFLGALDQGRWI-HAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G RP+ HAG+V D R I H + + ++ + D+ + G I
Sbjct: 311 DGIRPDGHAGLV------------DLARRIFHDMESVHNVPRELKHYGCMADLLGRAGLI 358
Query: 272 ETACSVFDSMPNR-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-----MSE 325
E A ++ MP D + + +++G H + A EL R L+ + P++S M+
Sbjct: 359 EEAMNMVRKMPMEGDNYVWGGILAGCRMHG-NVEAAELAARHLLQ-LNPDDSGVYSAMAG 416
Query: 326 IYG 328
IY
Sbjct: 417 IYA 419
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 236/453 (52%), Gaps = 65/453 (14%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
RLF + R WN+MIRG + E +A L+ +M D +
Sbjct: 2 RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAV----------------- 44
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
S++ +L+G Y M+ A LF+ R+V+SW+++++
Sbjct: 45 ------------------SWNTILDG----YVKAGEMNKAFGLFESMPERNVVSWSTMVS 82
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
GY K+G + +AR +FD+MP KN VSW+ +++GY L K+A+ F M+ G +P+
Sbjct: 83 GYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGT 142
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
++ L +CA G L G+ +H ++R + + + A++DMYAKCG ++ A SVF+ M
Sbjct: 143 VISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMS 202
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+D+ ++ ++ GLA H A++LF M+ EG P++
Sbjct: 203 KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIR 262
Query: 322 ---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVH 378
+M YGI P ++HYGC+VDLLGR G L+ A ++V+ MP+EP+ + G LL ACR+H
Sbjct: 263 YFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH 322
Query: 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438
V L +E ++ L + G + LLSNI+AS W+ V VR M++ ++K G S
Sbjct: 323 NAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGASS 382
Query: 439 IEVDGVVCEFVSGERTNVLMEEIVLLL--FGID 469
IEVD V EF ++++ ++I ++ G+D
Sbjct: 383 IEVDDEVHEFTVFDKSHPKSDKIYQMINRLGLD 415
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 36/286 (12%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
+ G+C A GD+ LF + + W ++ G+A K A ++QM +
Sbjct: 81 VSGYCKA---GDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLK 137
Query: 86 PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKL 145
P++ T IL +CA++ L +G H + R+ ++ V N L+ +YA C +D A +
Sbjct: 138 PDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSV 197
Query: 146 FDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205
F+ +D++SW ++ G A G ++AL
Sbjct: 198 FNGMSKKDLVSWNCMLQGLAMHGH-------------------------------GEKAL 226
Query: 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDM 264
+ F+ M+ GFRP+ +V L AC G +D+G R+ + GI I ++D+
Sbjct: 227 QLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDL 286
Query: 265 YAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELF 309
+ G ++ A + SMP +V + +L+ H+ A E+
Sbjct: 287 LGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVL 332
>gi|50726624|dbj|BAD34344.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 607
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 238/419 (56%), Gaps = 11/419 (2%)
Query: 69 PIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG 128
P A L+ +LRS P++ ++ L CA HA + G S+ V NG
Sbjct: 59 PQLALRLFDHLLRSGADPDHVAYALALGRCARGRDRRAAAQLHAHAAKRGAASHRRVCNG 118
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSW 188
L+H YA C + ARK+FD D ++W SL+ GYA +G ++ R+ F M ++ VSW
Sbjct: 119 LIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSW 178
Query: 189 SAMINGYVQVDLFKEALEHFNYMQLCGFR--PNHAGIVGALTACAFLGALDQGRWIHAYV 246
+ +I V+ ++EA+ F M L P+ +V ++A +LGAL QG W HAYV
Sbjct: 179 NTIIAWCVENGEYEEAIAVFREM-LASMECLPDRVTLVSVISAITYLGALAQGLWAHAYV 237
Query: 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM-PNRDVFAYTSLISGLANHDQSASA 305
R GIE++ L +A+I+MY+KCGCIE A VF+++ +V + ++++G + S A
Sbjct: 238 CRKGIEVEERLSSALINMYSKCGCIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKA 297
Query: 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDN 365
+ELF RM++ G+VPN+ + +G V+ G+ + A+K+++ MP++PD
Sbjct: 298 LELFARMEITGLVPNKI---TFNTVLNACSHGGFVE----EGLFDKAEKMIQMMPMKPDA 350
Query: 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
V AL+ AC+ H + +LG++ L+E + + +VLLSNIYA W GV KVR+ M
Sbjct: 351 AVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGYVLLSNIYALDGNWTGVHKVRKLM 410
Query: 426 EDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
D V+KVPG S IE+DGV+ EF+SG++++ E+I +L + + LK + D + V
Sbjct: 411 LDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVAGYVPDTSHV 469
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 17/224 (7%)
Query: 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLP 86
G+ +A D+ L FV +Q R T WNT+I E E +A A++++ML S + LP
Sbjct: 153 GYAAAGDVNALR---EFFVGMQARDTVSWNTIIAWCVENGEYEEAIAVFREMLASMECLP 209
Query: 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146
+ T ++ A L GL HA V R G E + + + L+++Y+ C C++ A +F
Sbjct: 210 DRVTLVSVISAITYLGALAQGLWAHAYVCRKGIEVEERLSSALINMYSKCGCIEGAVHVF 269
Query: 147 D-MSVNRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMIN-----GYV 196
+ + +V +W +++ G+ +G A ++F +M N ++++ ++N G+V
Sbjct: 270 ENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFV 329
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ LF +A + +Q+ +P+ A + AC + GR
Sbjct: 330 EEGLFDKAEK---MIQMMPMKPDAAVWKALVGACKTHRNFELGR 370
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQ-- 113
WN M+ GF KA L+ +M + +PN TF+ +L AC+ + GL A+
Sbjct: 281 WNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGLFDKAEKM 340
Query: 114 VIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM---SVNRDVISWTSLINGYAKSGQI 170
+ + + V L+ T + RK M + D + L N YA G
Sbjct: 341 IQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGYVLLSNIYALDGNW 400
Query: 171 S----IARQMFDKMPEKNAVSWSAMINGYV------------QVDLFKEALEHFNYMQLC 214
+ + + M D+ +K S S I+G + + D+++ E +++
Sbjct: 401 TGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVA 460
Query: 215 GFRPNHAGIV 224
G+ P+ + ++
Sbjct: 461 GYVPDTSHVL 470
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 235/462 (50%), Gaps = 55/462 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +F + R + W+ MI G+A+ E A +++ QM + F P +TF +L
Sbjct: 163 GCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVL 222
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A +D L VG H +++LG+E +V + L+ +YA C
Sbjct: 223 NASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKC------------------- 263
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G I+ A++ FD++ E + V W+AM++G+VQ +EAL + M G
Sbjct: 264 ------------GCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEG 311
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ + I L ACA + AL+ G+ +H + + G+ L +G+A+ MY+KCG +E
Sbjct: 312 IIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGM 371
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
SVF +P+RDV A+ S+ISG + + A++LF M++EG +P+
Sbjct: 372 SVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMG 431
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M++ YG+ P + HY C+VD+L RAGML+ AK + + I+ + +
Sbjct: 432 LVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIV 491
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR D D+G E L+E ++LLSNIYAS +WN VE+VR M V
Sbjct: 492 LGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVN 551
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
K PGCS +E++ V FV GE+ + E I L + KH+K
Sbjct: 552 KDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMK 593
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 178/379 (46%), Gaps = 58/379 (15%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G +S R+F + R +F W+TM+ G+A + +AF L++ ML P+ + F+
Sbjct: 60 LGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE--CPSEKS-EFV 116
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A + +GL+ Q+ L V +GLL + N
Sbjct: 117 ATAVLSAVSVPLGLLMGEQMHGL------IVKDGLLDFVSVEN----------------- 153
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SL+ YAK+G + A +F+ E+N+++WSAMI GY Q A+ F+ M
Sbjct: 154 ----SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAA 209
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
GF P VG L A + LGAL G+ H + + G E+ I + +A++DMYAKCGCI A
Sbjct: 210 GFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADA 269
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------SEI 326
FD + D+ +T+++SG + + A+ L+ RM EG++P++S + I
Sbjct: 270 KEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGI 329
Query: 327 YGIEPGVQ------HYG---------CLVDLLGRAGMLEAAKKVVREMP----IEPDNYV 367
+EPG Q YG L + + G LE V R +P I ++ +
Sbjct: 330 AALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSII 389
Query: 368 LGALLNACRVHGDVDLGKE 386
G N C +G +DL +E
Sbjct: 390 SGFSQNGCG-NGALDLFEE 407
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 135/293 (46%), Gaps = 30/293 (10%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGF 216
TSL+N Y K G +S AR++FD MP++N+ SWS M+ GY +EA + F M + C
Sbjct: 51 TSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPS 110
Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
+ L+A + L G +H + ++G+ + + +++ MYAK GC+ A
Sbjct: 111 EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFH 170
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYG 328
VF+S R+ ++++I+G A + ++ SA+ +F +M G P E + S++
Sbjct: 171 VFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGA 230
Query: 329 IEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
+ G Q +G LVD+ + G + AK+ ++ Y + +L
Sbjct: 231 LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL------YEVDIVLW 284
Query: 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V G V G+ + +D EG+ S I + G+ + G +
Sbjct: 285 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ 337
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
++ + T++++MY K G + A VFD MP R+ F+++++++G A S A +LF R+
Sbjct: 46 NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF-RLM 104
Query: 314 LE 315
LE
Sbjct: 105 LE 106
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G+L G +F + R WN++I GF++ A L+++M +P+N TF
Sbjct: 362 SKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFI 421
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESY-----DFVLNGLLHLYA 134
IL AC+ H ++ GWE + D+ L L YA
Sbjct: 422 NILCACS-----------HMGLVDRGWEYFSLMTKDYGLTPRLDHYA 457
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 255/509 (50%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ KQ + + G D F ++ C+ SD G + + +F + +F +NTM+
Sbjct: 1 MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + +A YK+M P+N+T+ +L+ACA + G+ HA +++LG E
Sbjct: 61 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ FV N SLI+ Y K G+I + +F++M
Sbjct: 121 NDVFVQN-------------------------------SLISMYGKCGEIGVCCAVFEQM 149
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQG 239
E++ SWSA+I + + ++ + L M G+ R + +V L+AC LGALD G
Sbjct: 150 NERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLG 209
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H ++ RN L++I+ T++I+MY KCG + +F M ++ +Y+ +ISGLA H
Sbjct: 210 RSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMH 269
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ +F M +G+ P++ M +GIEP +QH
Sbjct: 270 GYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 329
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDL+GRAG ++ A ++++ MP+EP++ + +LL+A +VH ++ G+ + L +
Sbjct: 330 YGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLD 389
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+V+LSN+YA ++W V + R M + + PG SL+EV + FVS + +
Sbjct: 390 SQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGH 449
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E + +L+ ++ LK + D +V
Sbjct: 450 PQSESVYEMLYQMEWQLKFEGYXPDTTQV 478
>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
Length = 741
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/454 (33%), Positives = 232/454 (51%), Gaps = 54/454 (11%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F + R + W+ MI G+A+ E A ++ QM + F P +TF IL A +D
Sbjct: 282 VFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGA 341
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
L VG H +++LG+E +V + L+ +YA C C A+ F
Sbjct: 342 LVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGF----------------- 384
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
Q++D + V W+AMI G+VQ +EAL ++ M G P++ +
Sbjct: 385 ----------HQLYDV---DDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTV 431
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
L ACA L AL+ G+ +HA + + G L +GTA+ MY+KCG +E + VF MP+
Sbjct: 432 TSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPD 491
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN----------------------- 320
RD+ ++ S+ISG + H + A++LF M+LEG+ P+
Sbjct: 492 RDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFY 551
Query: 321 -ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+MS+ YG+ P + HY C+VD+L RAG L+ AK + + I+ + +L ACR
Sbjct: 552 FRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLR 611
Query: 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
D D+G E L+E + ++LLSNIYA+ +WN VE+VR M V K PGCS +
Sbjct: 612 DFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWV 671
Query: 440 EVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
E++ V FV GE+ + E+I + L + KH+K
Sbjct: 672 ELNNQVNVFVVGEQQHPEAEKINVELIRLAKHMK 705
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 181/414 (43%), Gaps = 65/414 (15%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSF 93
+G +S R+F + +R W M+ G+A +AF L++ ML+ L N + +
Sbjct: 171 LGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATA 230
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L A + L +G+ H V++ G + V N L+ +YA CMD A M+V
Sbjct: 231 VLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAA-----MAV--- 282
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
F E+N+++WSAMI GY Q A F M
Sbjct: 283 -----------------------FGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHS 319
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
GF P VG L A + +GAL G+ H + + G E + + +A++DMYAKCGC
Sbjct: 320 AGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGD 379
Query: 274 ACSVFDSMPN-RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMS 324
A F + + DV +T++I+G + + A+ L+ RM EGV+P+ + +
Sbjct: 380 AKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACA 439
Query: 325 EIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ +EPG Q + L + + G LE + V R MP + D
Sbjct: 440 CLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMP-DRDIISWN 498
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGV---HVLLSNIYASTEQWNGVEK 420
++++ HG G++ ++ E L EG+ H+ N+ + V++
Sbjct: 499 SIISGFSQHGR---GRDALDLFEEMKL--EGIAPDHITFINVLCACSHMGLVDR 547
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 144/303 (47%), Gaps = 40/303 (13%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGL 108
R WN+++ + +++P+ A + ++ M+ S LP ++F+ + A A G
Sbjct: 82 RDVASWNSLLNPLS-RHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGA 140
Query: 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168
+ HA A KL S + +V T+L+N Y K G
Sbjct: 141 VAHAF----------------------------ACKLPSSSGSNNVFVSTALLNMYCKLG 172
Query: 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGAL 227
IS AR++FD+MP +NAVSW+AM++GY +EA E F M Q C N L
Sbjct: 173 AISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVL 232
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
+A + L G +H V ++G+ + + +++ MYAK C++ A +VF S R+
Sbjct: 233 SAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSI 292
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHYGCL 339
++++I+G A + ++ A +F++M G P E + S++ + G Q +G +
Sbjct: 293 TWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLM 352
Query: 340 VDL 342
V L
Sbjct: 353 VKL 355
>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
Length = 622
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 252/501 (50%), Gaps = 62/501 (12%)
Query: 20 PFAVGKIIGFCSASD-IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE----KNEPIKAFA 74
P ++ C+ S G + +F L F +NT++RG EP A
Sbjct: 74 PRHARPLLAACALSGWPGGMELAASIFESLVEPEAFDYNTLMRGHVGGGRGDREPAAALR 133
Query: 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA 134
LY ML + P++YTF F+L+ACA + L G A + +LG + + V N
Sbjct: 134 LYVDMLEAGVGPDSYTFPFVLKACAQLASLQQGRQLQAHIEKLGLQHDEHVQN------- 186
Query: 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKNAVSWSAMI 192
SLI+ Y K G+ ++AR FD++ E+ SWSA++
Sbjct: 187 ------------------------SLISFYGKCGEPAMARLAFDRVEDEERTTASWSALL 222
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252
Y + L+ E LE F M L G+RP+ + +V A++ACA LGA D GR IH + RN
Sbjct: 223 AAYTKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALLRNTAR 282
Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312
L+ I+ T+++DMYAKCG IE A +VFD+M +++ +AY++++SGLA H A+++F M
Sbjct: 283 LNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAYSAMLSGLALHGDGRKALQVFDAM 342
Query: 313 QLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGM 348
EG P+ + M + P QHYGC+VDL+ RAG
Sbjct: 343 VREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKFAPNAQHYGCMVDLMARAGR 402
Query: 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408
L+ A+ ++ MP P + +LLNACR+HGD+DL + +E L + G +V+++++
Sbjct: 403 LDDARALIGSMPTGPTDTAWRSLLNACRIHGDLDLAESALEELRSLGAANAGDYVIVADM 462
Query: 409 YASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGI 468
+A + W R D + + PG S +EV G + FVS + ++ +I +L +
Sbjct: 463 HARAKNWAAAAAFRTEAVDWGLAQSPGFSAVEVRGELHRFVSQDMSHPRTRDIYEMLHQM 522
Query: 469 DKHLKSLCFFDDGNEVATEGG 489
+ L+ + D +EVA + G
Sbjct: 523 EWQLRFDGYRPDTSEVALDVG 543
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 15/250 (6%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF---CSASDIGDLSHGYRLFVCLQYRTTFIWN 57
++Q +Q+Q+H+ G D +I F C + L+ V + RTT W+
Sbjct: 163 LQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDR---VEDEERTTASWS 219
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
++ + + + + M+ + P+ + + ACA VG H ++R
Sbjct: 220 ALLAAYTKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALLRN 279
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
+ L+ +YA C ++ A +FD +++ +++++++G A G A Q+F
Sbjct: 280 TARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAYSAMLSGLALHGDGRKALQVF 339
Query: 178 DKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPN--HAGIVGALTAC 230
D M + +A ++ ++N + L ++ L F+ M+L F PN H G + L A
Sbjct: 340 DAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKFAPNAQHYGCMVDLMAR 399
Query: 231 AFLGALDQGR 240
A G LD R
Sbjct: 400 A--GRLDDAR 407
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 147/509 (28%), Positives = 255/509 (50%), Gaps = 56/509 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M++ KQ + + G D F ++ C+ SD G + + +F + +F +NTM+
Sbjct: 44 MEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMM 103
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
RG + +A YK+M P+N+T+ +L+ACA + G+ HA +++LG E
Sbjct: 104 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 163
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ FV N SLI+ Y K G+I + +F++M
Sbjct: 164 NDVFVQN-------------------------------SLISMYGKCGEIGVCCAVFEQM 192
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLGALDQG 239
E++ SWSA+I + + ++ + L M G+ R + +V L+AC LGALD G
Sbjct: 193 NERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLG 252
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
R +H ++ RN L++I+ T++I+MY KCG + +F M ++ +Y+ +ISGLA H
Sbjct: 253 RSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMH 312
Query: 300 DQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQH 335
+ +F M +G+ P++ M +GIEP +QH
Sbjct: 313 GYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 372
Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
YGC+VDL+GRAG ++ A ++++ MP+EP++ + +LL+A +VH ++ G+ + L +
Sbjct: 373 YGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLD 432
Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
+V+LSN+YA ++W V K R M + + PG SL+EV + FVS + +
Sbjct: 433 SQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGH 492
Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E + +L+ ++ LK + D +V
Sbjct: 493 PQSESVYEMLYQMEWQLKFEGYSPDTTQV 521
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 235/462 (50%), Gaps = 55/462 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +F + R + W+ MI G+A+ E A +++ QM + F P +TF +L
Sbjct: 269 GCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVL 328
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A +D L VG H +++LG+E +V + L+ +YA C
Sbjct: 329 NASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKC------------------- 369
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G I+ A++ FD++ E + V W+AM++G+VQ +EAL + M G
Sbjct: 370 ------------GCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEG 417
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ + I L ACA + AL+ G+ +H + + G+ L +G+A+ MY+KCG +E
Sbjct: 418 IIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGM 477
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
SVF +P+RDV A+ S+ISG + + A++LF M++EG +P+
Sbjct: 478 SVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMG 537
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M++ YG+ P + HY C+VD+L RAGML+ AK + + I+ + +
Sbjct: 538 LVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIV 597
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR D D+G E L+E ++LLSNIYAS +WN VE+VR M V
Sbjct: 598 LGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVN 657
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
K PGCS +E++ V FV GE+ + E I L + KH+K
Sbjct: 658 KDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMK 699
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 178/379 (46%), Gaps = 58/379 (15%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G +S R+F + R +F W+TM+ G+A + +AF L++ ML P+ + F+
Sbjct: 166 LGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE--CPSEKS-EFV 222
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A + +GL+ Q+ L V +GLL + N
Sbjct: 223 ATAVLSAVSVPLGLLMGEQMHGL------IVKDGLLDFVSVEN----------------- 259
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SL+ YAK+G + A +F+ E+N+++WSAMI GY Q A+ F+ M
Sbjct: 260 ----SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAA 315
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
GF P VG L A + LGAL G+ H + + G E+ I + +A++DMYAKCGCI A
Sbjct: 316 GFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADA 375
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------SEI 326
FD + D+ +T+++SG + + A+ L+ RM EG++P++S + I
Sbjct: 376 KEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGI 435
Query: 327 YGIEPGVQ------HYG---------CLVDLLGRAGMLEAAKKVVREMP----IEPDNYV 367
+EPG Q YG L + + G LE V R +P I ++ +
Sbjct: 436 AALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSII 495
Query: 368 LGALLNACRVHGDVDLGKE 386
G N C +G +DL +E
Sbjct: 496 SGFSQNGCG-NGALDLFEE 513
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 170/401 (42%), Gaps = 62/401 (15%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADTSCLFVGLI 109
R WN+++ + + P+ A + ++ ML S LP+ ++F+ A A + G
Sbjct: 80 RDVTSWNSLLNPLS-GHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTA 138
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA C P S +V TSL+N Y K G
Sbjct: 139 AHALA-----------------------CKIP-------SAVSNVYVCTSLLNMYCKLGI 168
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALT 228
+S AR++FD MP++N+ SWS M+ GY +EA + F M + C + L+
Sbjct: 169 VSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLS 228
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
A + L G +H + ++G+ + + +++ MYAK GC+ A VF+S R+
Sbjct: 229 AVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSIT 288
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHYG--- 337
++++I+G A + ++ SA+ +F +M G P E + S++ + G Q +G
Sbjct: 289 WSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMV 348
Query: 338 ------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
LVD+ + G + AK+ ++ Y + +L V G V G+
Sbjct: 349 KLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL------YEVDIVLWTAMVSGHVQNGE 402
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ +D EG+ S I + G+ + G +
Sbjct: 403 HEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ 443
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 159 SLINGYAKSGQ--ISIARQMFDKMPE--KNAVSWSAMIN---GYVQVDLFKEALEHFNYM 211
SLIN Y+ + ++ A +FD +P ++ SW++++N G+ +D AL F M
Sbjct: 52 SLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLNPLSGHRPLD----ALSRFRSM 107
Query: 212 -QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCG 269
P+ A TA A + G HA + + ++ + T++++MY K G
Sbjct: 108 LSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLG 167
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+ A VFD MP R+ F+++++++G A S A +LF R+ LE
Sbjct: 168 IVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF-RLMLE 212
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G+L G +F + R WN++I GF++ A L+++M +P+N TF
Sbjct: 468 SKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFI 527
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESY-----DFVLNGLLHLYATCNCM 139
IL AC+ H ++ GWE + D+ L L YA CM
Sbjct: 528 NILCACS-----------HMGLVDRGWEYFSLMTKDYGLTPRLDHYA---CM 565
>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
Length = 495
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 152/411 (36%), Positives = 211/411 (51%), Gaps = 80/411 (19%)
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFD-MSVNRDVISWTSLINGYAKSG------ 168
+LG + V +GL+ LY + AR L D RDV+S T+++ G+A+ G
Sbjct: 78 KLGLDRRRAVRDGLVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAV 137
Query: 169 ----------------------QISIARQMFD---------------------------- 178
+ ARQ+ D
Sbjct: 138 VLFFAMADDRCVVHRRPSPPPRRSRRARQIGDLALGREAHRRVAERKVAMDVVAWNALVD 197
Query: 179 -KMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
+MP +KN VSW+ M++ + + +EAL F MQ RP+ A V AL ACA LGAL
Sbjct: 198 MRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGAL 257
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D GRW+HAY+ R G D ++G A++DMYAKCG ++ A VFD M RDV+ YTS+I GL
Sbjct: 258 DTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGL 317
Query: 297 ANHDQSASAIELFMRMQLEGVVPN------------------ESMSEIYGI-EPGVQHYG 337
A H + A+ LF MQ GV PN E + ++ + EP ++HYG
Sbjct: 318 AMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPEPRIEHYG 377
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
C+VD+LGRAG L+ A++++ MP+ D + +LL ACR HGDV+ + + V +
Sbjct: 378 CVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMRRRVADA-- 435
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448
G +VL+SN YAS + KVR M NE+ KVPGCSLIE+DGVV EF
Sbjct: 436 DAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLIEIDGVVHEF 486
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 39/261 (14%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WNTM+ FA E +A AL+++M + P++ TF L ACA L G HA +
Sbjct: 209 WNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMG 268
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
R+G + V N LL +YA C +D A ++FD RDV ++TS+I G A G+
Sbjct: 269 RMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGR------ 322
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
++AL F MQ G PN ++G LTAC G
Sbjct: 323 -------------------------GEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGL 357
Query: 236 LDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLI 293
+++G + ++A E I ++DM + G ++ A + +MP + D ++SL+
Sbjct: 358 VEEGLQQLNAMP-----EPRIEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLL 412
Query: 294 SGLANHDQSASAIELFMRMQL 314
+ H A E MR ++
Sbjct: 413 AACRAHGDVERA-ERVMRRRV 432
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 20/186 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F + R + + +MI G A A +L+ M R+ PN T +L
Sbjct: 290 GAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVL 349
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY-------ATCNCMDPARKLF-D 147
AC CHA ++ G + + + + Y +D A +L
Sbjct: 350 TAC-----------CHAGLVEEGLQQLNAMPEPRIEHYGCVVDMLGRAGRLDKAEELIAA 398
Query: 148 MSVNRDVISWTSLINGYAKSGQISIA-RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALE 206
M V+ D + W+SL+ G + A R M ++ + +A + M N Y EA++
Sbjct: 399 MPVHSDALIWSSLLAACRAHGDVERAERVMRRRVADADAGDYVLMSNTYASNGRHGEAVK 458
Query: 207 HFNYMQ 212
M+
Sbjct: 459 VRGQMR 464
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 235/462 (50%), Gaps = 55/462 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + + +F + R + W+ MI G+A+ E A +++ QM + F P +TF +L
Sbjct: 269 GCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVL 328
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A +D L VG H +++LG+E +V + L+ +YA C
Sbjct: 329 NASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKC------------------- 369
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G I+ A++ FD++ E + V W+AM++G+VQ +EAL + M G
Sbjct: 370 ------------GCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEG 417
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ + I L ACA + AL+ G+ +H + + G+ L +G+A+ MY+KCG +E
Sbjct: 418 IIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGM 477
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
SVF +P+RDV A+ S+ISG + + A++LF M++EG +P+
Sbjct: 478 SVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMG 537
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M++ YG+ P + HY C+VD+L RAGML+ AK + + I+ + +
Sbjct: 538 LVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIV 597
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACR D D+G E L+E ++LLSNIYAS +WN VE+VR M V
Sbjct: 598 LGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVN 657
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
K PGCS +E++ V FV GE+ + E I L + KH+K
Sbjct: 658 KDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMK 699
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 178/379 (46%), Gaps = 58/379 (15%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G +S R+F + R +F W+TM+ G+A + +AF L++ ML P+ + F+
Sbjct: 166 LGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE--CPSEKS-EFV 222
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A + +GL+ Q+ L V +GLL + N
Sbjct: 223 ATAVLSAVSVPLGLLMGEQMHGL------IVKDGLLDFVSVEN----------------- 259
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SL+ YAK+G + A +F+ E+N+++WSAMI GY Q A+ F+ M
Sbjct: 260 ----SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAA 315
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
GF P VG L A + LGAL G+ H + + G E+ I + +A++DMYAKCGCI A
Sbjct: 316 GFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADA 375
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--------SEI 326
FD + D+ +T+++SG + + A+ L+ RM EG++P++S + I
Sbjct: 376 KEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGI 435
Query: 327 YGIEPGVQ------HYG---------CLVDLLGRAGMLEAAKKVVREMP----IEPDNYV 367
+EPG Q YG L + + G LE V R +P I ++ +
Sbjct: 436 AALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSII 495
Query: 368 LGALLNACRVHGDVDLGKE 386
G N C +G +DL +E
Sbjct: 496 SGFSQNGCG-NGALDLFEE 513
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 171/401 (42%), Gaps = 62/401 (15%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLPNNYTFSFILRACADTSCLFVGLI 109
R WN+++ + ++ P+ A + ++ ML S LP+ ++F+ A A + G
Sbjct: 80 RDVASWNSLLNPLS-RHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTA 138
Query: 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169
HA C P S +V TSL+N Y K G
Sbjct: 139 AHALA-----------------------CKIP-------SAVSNVYVCTSLLNMYCKLGI 168
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLCGFRPNHAGIVGALT 228
+S AR+MFD MP++N+ SWS M+ GY +EA + F M + C + L+
Sbjct: 169 VSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLS 228
Query: 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA 288
A + L G +H + ++G+ + + +++ MYAK GC+ A VF+S R+
Sbjct: 229 AVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSIT 288
Query: 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHYG--- 337
++++I+G A + ++ SA+ +F +M G P E + S++ + G Q +G
Sbjct: 289 WSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMV 348
Query: 338 ------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGK 385
LVD+ + G + AK+ ++ Y + +L V G V G+
Sbjct: 349 KLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL------YEVDIVLWTAMVSGHVQNGE 402
Query: 386 ETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
+ +D EG+ S I + G+ + G +
Sbjct: 403 HEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ 443
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 19/112 (16%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G+L G +F + R WN++I GF++ A L+++M +P+N TF
Sbjct: 468 SKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFI 527
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESY-----DFVLNGLLHLYATCNCM 139
IL AC+ H ++ GWE + D+ L L YA CM
Sbjct: 528 NILCACS-----------HMGLVDRGWEYFSLMTKDYGLTPRLDHYA---CM 565
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 243/458 (53%), Gaps = 38/458 (8%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA--CAD 100
+ F + R W +MI G+ + + +A L+ M D N S + C +
Sbjct: 188 KFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVN 247
Query: 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
+F + H S++ +++G + ++ A+ FD N++VISW +
Sbjct: 248 ARIIFGKMPIHDT------GSWNIMISG----FCKAGELESAKDFFDRMPNKNVISWGIM 297
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
++GY K+G + AR +FD+MP KN V+WS MI GY + +ALE F + +P+
Sbjct: 298 LDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDE 357
Query: 221 AGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279
I+G ++AC+ LG +D IH YV + + D+ + T++IDMYAKCG IE A +F+
Sbjct: 358 TFILGIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKALQMFE 416
Query: 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------------- 320
+D+ Y+++I+ LANH AI LF +MQ + P+
Sbjct: 417 MAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDE 476
Query: 321 -----ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
+ M+E +GI+P +HY C+VDLLGR G LE A ++R MPI P + V GALL AC
Sbjct: 477 GRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAAC 536
Query: 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
RVH +V L + L + D+ G ++LLSNIYA+ +W V KVR + ++ VRK G
Sbjct: 537 RVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRG 596
Query: 436 CSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
S IE+ VV EFV G+ ++ + I L+L+ + + +K
Sbjct: 597 SSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMK 634
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 193/401 (48%), Gaps = 45/401 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDP-FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K +K I + L + ++ F + K++ S D +H ++F + ++W ++
Sbjct: 15 LKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAH--KVFDEITQPNAYLWTSL 72
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I G+ E + +AF+L+ QM R N+T S +L+A A + G + V++ G+
Sbjct: 73 IHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGF 132
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
V N +L L+ C +D AR+ FD +D++SW +I+GY + ++ IAR+ FD+
Sbjct: 133 AFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDR 192
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL------TACAFL 233
MPE+N VSW++MI GYV+ EA F+ M + + + G + A
Sbjct: 193 MPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIF 252
Query: 234 GAL---DQGRW---IHAYVDRNGIE-----------LDIILGTAIIDMYAKCGCIETACS 276
G + D G W I + +E ++I ++D Y K G A
Sbjct: 253 GKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARC 312
Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336
+FD MP +++ ++++I G A + Q A+ELF R + + + P+E+ I GI
Sbjct: 313 LFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETF--ILGI------- 363
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
+ + G+++AA+ ++ NYV +LL+ RV
Sbjct: 364 ---ISACSQLGIIDAAESIIH-------NYVGPSLLSDLRV 394
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 144/429 (33%), Positives = 229/429 (53%), Gaps = 64/429 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ ++F + R W MI G+A ++ ++A L+ +M P S+
Sbjct: 172 GEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM------PEKNAVSW-- 223
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
N ++ Y C + ARK+FD +R+V+
Sbjct: 224 -------------------------------NAIISGYVKCGDLRSARKMFDEMPHRNVV 252
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
S+T++I+GYAKSG ++ AR +F++ PE++ V+WSA+I+GYVQ EA++ F M
Sbjct: 253 SFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRN 312
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII-LGTAIIDMYAKCGCIETA 274
+P+ +V ++AC+ +G+L+ +W+ YV ++ I++ + A+IDM AKCG ++ A
Sbjct: 313 VKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRA 372
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
+F+ MP RD+ +Y S++ GL+ H A+ LF RM EG+ P+
Sbjct: 373 TKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRA 432
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
ESM Y I P HY C+VDLLGRAG L+ A ++++ MP+EP GA
Sbjct: 433 GLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGA 492
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL AC++H D++LG+ + L E + G +VLLSNIYA+ EQW V +R M + +
Sbjct: 493 LLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGI 552
Query: 431 RKVPGCSLI 439
RK+PGCS I
Sbjct: 553 RKIPGCSWI 561
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 196/397 (49%), Gaps = 57/397 (14%)
Query: 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGF 63
++Q+ + + G D F + + + C++ + + S+ +F + +T +WNT I+G+
Sbjct: 41 LEQVHARIIRKGLHQDHFIISQFLTLCNS--LSNFSYTTSVFNGVSSPSTVLWNTYIKGY 98
Query: 64 AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
+E +L+ +M RSD +P+ +T+ +++AC+ + G+ H +R G
Sbjct: 99 SENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDV 158
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
FV+ L+ LY C + ARK+FD R+V+SWT++I GYA + AR++FD+MPEK
Sbjct: 159 FVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEK 218
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
NAVSW+A+I+GYV+ + A + F+ M P+
Sbjct: 219 NAVSWNAIISGYVKCGDLRSARKMFDEM------PHR----------------------- 249
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+++ T +ID YAK G + +A VF+ P RDV A+++LISG + Q
Sbjct: 250 ----------NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPN 299
Query: 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMP 360
A+++F+ M V P+E + L+ + G LE AK V VR+
Sbjct: 300 EAVKIFLEMCSRNVKPDEFI------------MVSLMSACSQMGSLELAKWVDDYVRKSS 347
Query: 361 IEPDN-YVLGALLNACRVHGDVDLGKETVESLVERSL 396
I+ +V+ AL++ G +D + E + +R L
Sbjct: 348 IDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDL 384
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 239/469 (50%), Gaps = 56/469 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F L R WN MI G A++ +A +L+ QM R F P+ TF IL
Sbjct: 384 GSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNIL 443
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A +G E+ ++V +H YA +D L D+ V
Sbjct: 444 SA------------------NVGEEALEWVKE--VHSYA----IDAG--LVDLRVG---- 473
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+L++ YAK G A+Q+FD M E+N +W+ MI+G Q EA F M G
Sbjct: 474 --NALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG 531
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ V L+ACA GAL+ + +H++ G+ D+ +G A++ MYAKCG ++ A
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDAR 591
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VFD M RDV+++T +I GLA H + A++LF++M+LEG PN
Sbjct: 592 RVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAG 651
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
S+++ YGIEP ++HY C+VDLLGRAG LE AK + MPIEP + GAL
Sbjct: 652 LVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGAL 711
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L AC +G++++ + + ++ +VLLSNIYA+T W VR M+ +R
Sbjct: 712 LGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIR 771
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
K PG S IEVD + FV G+ ++ +EI L + K LK+ + D
Sbjct: 772 KEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPD 820
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 130/262 (49%), Gaps = 31/262 (11%)
Query: 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
MI G+AE A +Y QM R PN T+ IL+AC L G HA +I+ G
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
++S V L+++Y C +D A+ +FD V R+VISWT +I G A G+
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGR--------- 111
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+EA F MQ GF PN V L A A GAL+
Sbjct: 112 ----------------------GQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEW 149
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+ +H++ G+ LD+ +G A++ MYAK G I+ A VFD M RD+F++T +I GLA
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209
Query: 299 HDQSASAIELFMRMQLEGVVPN 320
H + A LF++M+ G +PN
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPN 231
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 148/327 (45%), Gaps = 41/327 (12%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGF---CSASDIGDLSHGYRLFVCLQYRTTFIWN 57
+K K+I +H+ SG D ++ C + D L +F + R W
Sbjct: 46 LKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQL-----IFDKMVERNVISWT 100
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
MI G A +AF + QM R F+PN+YT+ IL A A L H+ +
Sbjct: 101 VMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA 160
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G V N L+H+YA +D AR +FD V RD+ SWT +I G A+ G+
Sbjct: 161 GLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR-------- 212
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF--LGA 235
+EA F M+ G PN + L A A GA
Sbjct: 213 -----------------------GQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGA 249
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L+ + +H + + G D+ +G A+I MYAKCG I+ A VFD M +RDV ++ ++I G
Sbjct: 250 LEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGG 309
Query: 296 LANHDQSASAIELFMRMQLEGVVPNES 322
LA + A +F++MQ EG VP+ +
Sbjct: 310 LAQNGCGHEAFTIFLKMQQEGFVPDST 336
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 183/429 (42%), Gaps = 61/429 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
++ +K++ H +G + D VG + A G + +F + R WN MI
Sbjct: 250 LEWVKEVHKHAGKAGFISD-LRVGNALIHMYAK-CGSIDDARLVFDGMCDRDVISWNAMI 307
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G A+ +AF ++ +M + F+P++ T+ +L T H + +G
Sbjct: 308 GGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV 367
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S V + +H+Y C G I A+ +FDK+
Sbjct: 368 SDLRVGSAFVHMYIRC-------------------------------GSIDDAQLIFDKL 396
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+N +W+AMI G Q +EAL F M+ GF P+ V L+A AL+ +
Sbjct: 397 AVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVK 456
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
+H+Y G+ +D+ +G A++ MYAKCG A VFD M R+V +T +ISGLA H
Sbjct: 457 EVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHG 515
Query: 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VR 357
A LF++M EG+VP+ + Y ++ G LE K+V
Sbjct: 516 CGHEAFSLFLQMLREGIVPDATT------------YVSILSACASTGALEWVKEVHSHAV 563
Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
+ D V AL++ G VD + + ++ER ++Y+ T G
Sbjct: 564 NAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLER------------DVYSWTVMIGG 611
Query: 418 VEKVRRGME 426
+ + RG++
Sbjct: 612 LAQHGRGLD 620
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 15/209 (7%)
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
MI GY + ++A++ ++ M+ G +PN + L AC +L G+ IHA++ ++G
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+ D+ + TA+++MY KCG I+ A +FD M R+V ++T +I GLA++ + A F+
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120
Query: 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYV 367
+MQ EG +PN Y +++ AG LE K+V + D V
Sbjct: 121 QMQREGFIPNSYT------------YVSILNANASAGALEWVKEVHSHAVNAGLALDLRV 168
Query: 368 LGALLNACRVHGDVDLGKETVESLVERSL 396
AL++ G +D + + +VER +
Sbjct: 169 GNALVHMYAKSGSIDDARVVFDGMVERDI 197
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 246/467 (52%), Gaps = 56/467 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN-EPIKAFALYKQMLRSDFLPNNYTFSFI 94
G + ++F + F W MI G+ +K +A L++ M+ + +PN++TFS
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST 382
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L+ACA+ + L +G ++LG+ S + V N
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVAN--------------------------- 415
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SLI+ YA+SG+I AR+ FD + EKN +S++ +I+ Y + +EALE FN ++
Sbjct: 416 ----SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G + L+ A +G + +G IHA V ++G++L+ + A+I MY++CG IE+A
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
VF+ M +R+V ++TS+I+G A H + A+ELF +M EGV PN
Sbjct: 532 FQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHV 591
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
+SM +G+ P ++HY C+VD+LGR+G L A + + MP + D V
Sbjct: 592 GLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRT 651
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
L ACRVHG+++LGK + ++E+ ++LLSN+YAST +W+ V +R+ M++ +
Sbjct: 652 FLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNL 711
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
K GCS +EV+ V +F G+ ++ EI L + +K L +
Sbjct: 712 IKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGY 758
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 133/275 (48%), Gaps = 35/275 (12%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W+ M+ FA N +A + M+ + + PN Y F+ RAC+ + VG
Sbjct: 131 RDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSI 190
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS-GQ 169
V++ G+ + DV LI+ + K G
Sbjct: 191 FGFVVKTGY------------------------------LQSDVCVGCGLIDMFVKGRGD 220
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ A ++F+KMPE+NAV+W+ MI +Q EA++ F M L G+ P+ + G ++A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISA 280
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS---VFDSMPNRDV 286
CA + L G+ +H+ R+G+ LD +G +I+MYAKC + C+ +FD + + +V
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340
Query: 287 FAYTSLISGLANH-DQSASAIELFMRMQLEGVVPN 320
F++T++I+G A++LF M L V+PN
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPN 375
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 143/314 (45%), Gaps = 43/314 (13%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
+QS + V L D F G+ GDL +++F + R W MI +
Sbjct: 200 LQSDVCVGCGLIDMFVKGR----------GDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
+A L+ +M+ S + P+ +T S ++ ACA+ L +G H+Q IR G V
Sbjct: 250 GYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309
Query: 127 NGLLHLYATCN---CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
L+++YA C+ M ARK+FD ++ +V SWT++I GY + G
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKG--------------- 354
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
GY + EAL+ F M L PNH L ACA L AL G +
Sbjct: 355 ----------GYDE-----EALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+ + G + ++I MYA+ G I+ A FD + +++ +Y ++I A + S
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459
Query: 304 SAIELFMRMQLEGV 317
A+ELF ++ +G+
Sbjct: 460 EALELFNEIEDQGM 473
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 34/254 (13%)
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130
KA + + M+ P+ T+S L+ C T +G + H
Sbjct: 49 KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVH------------------- 89
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM-PEKNAVSWS 189
KL + D ++ SLI+ Y+K GQ A +F M ++ +SWS
Sbjct: 90 ------------EKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWS 137
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
AM++ + ++ AL F M G+ PN A AC+ + G I +V +
Sbjct: 138 AMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKT 197
Query: 250 G-IELDIILGTAIIDMYAKC-GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIE 307
G ++ D+ +G +IDM+ K G + +A VF+ MP R+ +T +I+ L + AI+
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAID 257
Query: 308 LFMRMQLEGVVPNE 321
LF+ M L G P+
Sbjct: 258 LFLEMILSGYEPDR 271
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 240/457 (52%), Gaps = 28/457 (6%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQV 114
WN++I G+ + I+A + ML+S L P+ +T +L ACA+ L +G HA +
Sbjct: 245 WNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHI 304
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS--VNRDVISWTSLINGYAKSGQISI 172
+R + V N L+ +YA ++ A ++ +++ + +VI++TSL++GY K G I
Sbjct: 305 VRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDP 364
Query: 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232
AR +FD + ++ V+W+AMI GY Q L +AL F M G +PN+ + L+ +
Sbjct: 365 ARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISS 424
Query: 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTS 291
L +LD G+ +HA R + +G A+I MY++ G I+ A +F+ + + RD +TS
Sbjct: 425 LASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTS 484
Query: 292 LISGLANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIY 327
+I LA H AIELF +M + P+ M ++
Sbjct: 485 MILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVH 544
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
IEP HY C++DLLGRAG+LE A +R MPIEPD G+LL++CRVH VDL K
Sbjct: 545 NIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVA 604
Query: 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCE 447
E L+ ++ G ++ L+N ++ +W KVR+ M+D V+K G S +++ V
Sbjct: 605 AEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHI 664
Query: 448 FVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
F + + + I ++ I K +K + F D N V
Sbjct: 665 FGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSV 701
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 192/418 (45%), Gaps = 61/418 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G+L R+F + + W TMI G+ A + +M+ S P +TF+ +L
Sbjct: 93 GNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVL 152
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+CA L VG H+ V++LG V N LL++YA C A+ +FD +D
Sbjct: 153 ASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTS 212
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QLC 214
+W ++I+ + + Q +A +FD+M + + VSW+++I GY ALE F++M +
Sbjct: 213 TWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSS 272
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+P+ + L+ACA +L G+ IHA++ R +++ +G A+I MYAK G +E A
Sbjct: 273 SLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVA 332
Query: 275 C---------------------------------SVFDSMPNRDVFAYTSLISGLANHDQ 301
++FDS+ +RDV A+T++I G A +
Sbjct: 333 HRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGL 392
Query: 302 SASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHYG---------------C 338
+ A+ LF M EG PN +S + ++ G Q +
Sbjct: 393 ISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNA 452
Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
L+ + R+G ++ A+K+ + D +++ + HG LG E +E L E+ L
Sbjct: 453 LITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG---LGNEAIE-LFEKML 506
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 168/335 (50%), Gaps = 17/335 (5%)
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYD-FVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L++ + F+G HA++I+ G F+ N LL+LY A +LFD +
Sbjct: 18 LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
SW ++++ +AK+G + AR++FD++P+ ++VSW+ MI GY + LFK A+ F M
Sbjct: 78 TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G P L +CA ALD G+ +H++V + G + + ++++MYAKCG
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332
A VFD M +D + ++IS Q A+ LF +M +V S I G
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNS------IITG 251
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
H G + RA LE +++ ++PD + LG++L+AC + LGK+ +V
Sbjct: 252 YCHQGYDI----RA--LETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIV 305
Query: 393 ERSLDHEG-VHVLLSNIYASTEQWNGVEKVRRGME 426
+D G V L ++YA + VE R +E
Sbjct: 306 RADVDIAGAVGNALISMYAKS---GAVEVAHRIVE 337
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 147/344 (42%), Gaps = 57/344 (16%)
Query: 26 IIGFCSASD----IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
+I F S D IGD+ +F L++R W MI G+A+ A L++ M+R
Sbjct: 346 VIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIR 405
Query: 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141
PNNYT + +L + + L G HA IRL S V N L+ +Y+ +
Sbjct: 406 EGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKD 465
Query: 142 ARKLFD-MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200
ARK+F+ + RD ++WTS+I A+ G L
Sbjct: 466 ARKIFNHICSYRDTLTWTSMILSLAQHG-------------------------------L 494
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGT 259
EA+E F M +P+H VG L+AC +G ++QG+ + + + + IE
Sbjct: 495 GNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYA 554
Query: 260 AIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANH---DQSASAIELFMRMQLE 315
+ID+ + G +E A + +MP DV A+ SL+S H D + A E + +
Sbjct: 555 CMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLID-- 612
Query: 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
PN S + Y L + L G E A KV + M
Sbjct: 613 ---PNNSGA-----------YLALANTLSACGKWEDAAKVRKSM 642
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 229/472 (48%), Gaps = 54/472 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L ++F + R W T+I G+++ + P A L+ QMLR F PN +T S ++
Sbjct: 100 GSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVI 159
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+A A G H ++ G++S V + LL LY MD A+ +FD +R+ +
Sbjct: 160 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 219
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW +LI G+A+ ++ALE F M G
Sbjct: 220 SWNALIAGHARRCGT-------------------------------EKALELFQGMLREG 248
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
FRP+H AC+ G L+QG+W+HAY+ ++G +L G ++DMYAK G I A
Sbjct: 249 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 308
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD + RDV ++ SL++ A H A+ F M+ G+ PNE
Sbjct: 309 KIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSG 368
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
+ + GI HY +VDLLGRAG L A + + EMPIEP + ALL
Sbjct: 369 LLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
NACR+H + +LG E + E D G HV+L NIYAS +WN +VR+ M+++ V+K
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
P CS +E++ + FV+ + + EEI + +K L + D + V
Sbjct: 489 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHV 540
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 27/259 (10%)
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
D++ +L+N YAK G + AR++FDKMPE++ V+W+ +I+GY Q D +AL FN M
Sbjct: 85 DLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQML 144
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
GF PN + + A A G +H + + G + ++ +G+A++D+Y + G ++
Sbjct: 145 RFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 204
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIYG--- 328
A VFD++ +R+ ++ +LI+G A + A+ELF M EG P+ S + ++G
Sbjct: 205 DAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACS 264
Query: 329 ----IEPG--VQHY-------------GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+E G V Y L+D+ ++G + A+K+ + + D
Sbjct: 265 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWN 323
Query: 370 ALLNACRVHGDVDLGKETV 388
+LL A HG G E V
Sbjct: 324 SLLTAYAQHG---FGNEAV 339
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 23/152 (15%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L C L QGR +H ++ ++ D+++ +++MYAKCG +E A VFD MP RD
Sbjct: 58 LKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDF 117
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIY------------------ 327
+T+LISG + HD+ A+ LF +M G PNE ++S +
Sbjct: 118 VTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGF 177
Query: 328 ----GIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
G + V L+DL R G+++ A+ V
Sbjct: 178 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLV 209
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 161/483 (33%), Positives = 251/483 (51%), Gaps = 78/483 (16%)
Query: 1 MKQIKQIQSHLTVSGTLWDP---FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWN 57
M Q+KQ+ + + + P F +I+ F S + DL + +R+F ++ +F+WN
Sbjct: 39 MSQLKQLHAQTIRTTSSHHPNTFFLYSRILHF---SSLHDLRYAFRVFHQIENPNSFMWN 95
Query: 58 TMIRGFAEKNEPIK-AFALYKQML-RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+IR A + + A ALY +ML + + + +TF F+L+ACA L G HAQ++
Sbjct: 96 ALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQIL 155
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+LG++S ++ N L+H YATC+ ++ A+
Sbjct: 156 KLGFDSBVYINNSLVHFYATCD-------------------------------RLDFAKG 184
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+M E++ VSW+ +I+ +V+ F AL F MQ F P+ I ACA +G+
Sbjct: 185 VFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGS 243
Query: 236 LDQGRWIHAYV----DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTS 291
L G W H ++ D + + D++L T+++DMY KCG +E A +F MP RDV ++ S
Sbjct: 244 LSLGMWAHVFLLKKXDADRVN-DVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNS 302
Query: 292 LISGLANHDQSASAIELFMRM-QLEGVVPN------------------------ESMSEI 326
+I G + H + A+A+E F M + E ++PN + M
Sbjct: 303 MILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTE 362
Query: 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
Y I+P ++HYGCLVDLL RAG+++ A VV MP+ PD + +LL+AC + G E
Sbjct: 363 YKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDAC---CKQNAGVE 419
Query: 387 TVESLVERSLDHE-----GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEV 441
E + R L+ E GV+VLLS +YAS +WN V VR+ M D V K PGCS IE+
Sbjct: 420 LSEEMASRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEI 479
Query: 442 DGV 444
+
Sbjct: 480 XAL 482
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/446 (32%), Positives = 243/446 (54%), Gaps = 57/446 (12%)
Query: 44 LFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103
+F ++ R W MI G++++ +A L+ QMLRSD PN +TF+ +L +C S
Sbjct: 67 VFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSG 126
Query: 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163
+G H+ + + +E++ FV +SL++
Sbjct: 127 FELGRQIHSHIFKRNYENHIFV-------------------------------GSSLLDM 155
Query: 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223
YAK+G+I AR +F+ +PE++ VS +A+I+GY Q+ L +EALE F +Q G N+
Sbjct: 156 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTY 215
Query: 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283
LTA + L ALD G+ +H++V R + ++L ++IDMY+KCG + A +F++MP
Sbjct: 216 ASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPV 275
Query: 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS------------------E 325
R V ++ +++ G + H + ++LF M+ E V +S++ E
Sbjct: 276 RTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLE 335
Query: 326 IYG--------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
++ IE G++HYGC++DLLGRAG +E A +++++MP EP + G+LL ACRV
Sbjct: 336 MFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRV 395
Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
H + ++G+ L+E ++ G +V+LSN+YAS +W V VR M + V K PG S
Sbjct: 396 HSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRS 455
Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVL 463
IE+D + F + +R++ EE+ L
Sbjct: 456 WIELDQTIHTFYASDRSHPRREEVFL 481
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 23/227 (10%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T LI Y K + AR +FD+M E+N VSW+AMI+GY Q EAL F M
Sbjct: 49 TRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTE 108
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
PN L++C + GR IH+++ + E I +G++++DMYAK G I A V
Sbjct: 109 PNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGV 168
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------ESMSEIYGI 329
F+ +P RDV + T++ISG A A+ELF R+Q EG+ N ++S + +
Sbjct: 169 FECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAAL 228
Query: 330 EPGVQHYG---------------CLVDLLGRAGMLEAAKKVVREMPI 361
+ G Q + L+D+ + G L A+K+ MP+
Sbjct: 229 DHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPV 275
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 147/361 (40%), Gaps = 58/361 (16%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+ ++H+ V +L D +A G + +F CL R +I G+A
Sbjct: 140 RNYENHIFVGSSLLDMYA-----------KAGRIHEARGVFECLPERDVVSCTAIISGYA 188
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ +A L+ ++ R N T++ +L A + + L G H+ V+R Y
Sbjct: 189 QLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVV 248
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N L+ +Y+ C ++ ARK+F+ R VISW +++ GY+K G+ ++F M E+N
Sbjct: 249 LQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREEN 308
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
V +P+ + L+ C+ G D+G +
Sbjct: 309 KV------------------------------KPDSVTFLAVLSGCSHGGLEDKGLEMFD 338
Query: 245 YVDRNG--IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA-YTSLISGLANHDQ 301
+ G IE I +ID+ + G +E A + MP A + SL+ H
Sbjct: 339 EMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVH-- 396
Query: 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI 361
S + I F+ +L + P + +Y L +L AG E + VRE+ +
Sbjct: 397 SNTNIGEFVGCRLLEIEPENA-----------GNYVILSNLYASAGRWEDVRN-VRELMM 444
Query: 362 E 362
E
Sbjct: 445 E 445
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 23/157 (14%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L C A+ +G+ +HA++ + + L T +I +Y KC C+ A VFD M R+V
Sbjct: 17 LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------SMSEIYGIEPGVQHY-- 336
++T++ISG + ++ A+ LF++M PNE S + G E G Q +
Sbjct: 77 VSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSH 136
Query: 337 -------------GCLVDLLGRAGMLEAAKKVVREMP 360
L+D+ +AG + A+ V +P
Sbjct: 137 IFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLP 173
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 247/496 (49%), Gaps = 63/496 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S +G + +F + + WN +I + + ++ KA + M + ++ T S
Sbjct: 329 SKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLS 388
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
IL A A TS + +G H IR ES V N ++ +YA C +D ARK+FD + R
Sbjct: 389 SILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTER 448
Query: 153 D-----------------------------------VISWTSLINGYAKSGQISIARQMF 177
D VISW S+I G+ ++GQ++ A+ MF
Sbjct: 449 DLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMF 508
Query: 178 DKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+M + N ++W+ +I+G Q EA+ F MQ G RP+ A I L AC +
Sbjct: 509 SQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDI 568
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+L GR IH ++ R+ L + + T+++DMYAKCG I+ A VF M ++++ Y ++I
Sbjct: 569 PSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMI 628
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
S A H Q+ A+ LF +Q EG+ P+ M + +
Sbjct: 629 SAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNM 688
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P ++HYGC+V LL R G L+ A +++ MP +PD ++LG+LL ACR H +++LG+ +
Sbjct: 689 NPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSK 748
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L + + G +V LSN YA+ +W V +R M+ +RK PGCS I+ G + FV
Sbjct: 749 HLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFV 808
Query: 450 SGERTNVLMEEIVLLL 465
+G+ ++ EEI +L
Sbjct: 809 AGDGSHPKTEEIYAML 824
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 154/320 (48%), Gaps = 45/320 (14%)
Query: 5 KQIQSHLTVSGTLW--DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI-- 60
+QI + + +G + + + K++ F + D +++ RLF L+ R F W ++
Sbjct: 99 QQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVA--VRLFHRLRVRNVFSWAAIVGL 156
Query: 61 ---RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
GF+E A + +M + P+N+ +L+AC + +G H V+++
Sbjct: 157 QCRMGFSED-----ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKM 211
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+ + FV +SL++ Y K G + AR++F
Sbjct: 212 GFGACVFV-------------------------------SSSLVDMYGKCGVLEDARKVF 240
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D M EKN V+W++MI GYVQ L +EA++ F M++ G P + L+A A L AL
Sbjct: 241 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 300
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+G+ HA N ++LD ILG++II+ Y+K G IE A VF M +DV + LIS
Sbjct: 301 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 360
Query: 298 NHDQSASAIELFMRMQLEGV 317
H Q A+ + M+ E +
Sbjct: 361 QHHQVGKALNMCHLMRSENL 380
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 130/285 (45%), Gaps = 31/285 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L ++F + + WN+MI G+ + +A ++ M P T + L
Sbjct: 231 GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFL 290
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A+ L G HA I LN S++ D I
Sbjct: 291 SASANLDALIEGKQGHAIAI----------LN---------------------SLDLDNI 319
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+S+IN Y+K G I A +F +M EK+ V+W+ +I+ YVQ +AL + M+
Sbjct: 320 LGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSEN 379
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
R + + L+A A + G+ H Y R +E D+++ +IIDMYAKC I+ A
Sbjct: 380 LRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDAR 439
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
VFDS RD+ + +L++ A S A++LF +MQ + V PN
Sbjct: 440 KVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPN 484
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T L+ YAK +A ++F ++ +N SW+A++ ++ ++AL F MQ G
Sbjct: 120 TKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF 179
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P++ + L AC L + G+ +H YV + G + + ++++DMY KCG +E A V
Sbjct: 180 PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKV 239
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
FDSM ++V + S+I G + + AI++F M++EG+ P
Sbjct: 240 FDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTR 283
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNG--IELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L C + AL G+ IHA + +NG + + T ++ YAKC E A +F + R
Sbjct: 86 LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR 145
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM----------SEIYGIEPGVQ 334
+VF++ +++ S A+ F+ MQ GV P+ + ++ G+ GV
Sbjct: 146 NVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVH 205
Query: 335 HY-------------GCLVDLLGRAGMLEAAKKVVREM 359
Y LVD+ G+ G+LE A+KV M
Sbjct: 206 GYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSM 243
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 246/492 (50%), Gaps = 71/492 (14%)
Query: 6 QIQSHLTVSGTLWDPFA-VGKIIGFCSASDIGDLS-------HGYRLFVCLQYRTTFIWN 57
Q +T G +++PF G I +C S + + H +L VC +N
Sbjct: 70 QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVC--------YN 121
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
++ G+ ++ +A L++QM N+ T ++ AC L +G H ++
Sbjct: 122 ALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY 181
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G++S V+N + +Y C G ++ A+++F
Sbjct: 182 GFDSDVSVVNCFITMYMKC-------------------------------GSVNYAQKLF 210
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D+MP K +SW+AM++GY Q L LE + M + G P+ +VG L++CA LGA
Sbjct: 211 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQS 270
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
G + + +G + L A+I+MYA+CG + A +VFD MP R + ++T++I G
Sbjct: 271 VGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYG 330
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H A++LF M G+ P+ + M Y +EPG
Sbjct: 331 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 390
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HY C+VDLLGRAG L+ A+ ++ MPI+PD V GALL AC++H +V+L + E ++E
Sbjct: 391 EHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE 450
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
++ G +VLLSNIY++ GV ++R M++ +++K PGCS +E+ G V F+ G+R
Sbjct: 451 LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDR 510
Query: 454 TNVLMEEIVLLL 465
++ +EI +L
Sbjct: 511 NHLQSDEIYRVL 522
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 168/371 (45%), Gaps = 57/371 (15%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WNT +R A++ + ++A +LY QMLR PN +TF F L++CA S +G H Q+
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--RDVISWTSLINGYAKSGQISIA 173
++G FV GL+ +Y + +D ARK+F+ + + + + + +L++GY + + S A
Sbjct: 77 KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+F +M E+ G N ++G + AC
Sbjct: 137 VLLFRQMNEE-------------------------------GVPVNSVTLLGLIPACVSP 165
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
L+ G +H + G + D+ + I MY KCG + A +FD MP + + ++ +++
Sbjct: 166 INLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMV 225
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE--------------SMSEIYGIEPGVQHYG-- 337
SG A + + + +EL+ M + GV P+ + S + +E +Q G
Sbjct: 226 SGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFT 285
Query: 338 -------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
L+++ R G L A+ V MP E A++ +HG ++ + +
Sbjct: 286 SNPFLNNALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKE 344
Query: 391 LVERSLDHEGV 401
++ ++ +G
Sbjct: 345 MIRSGIEPDGT 355
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 230/454 (50%), Gaps = 55/454 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +G LF + R W T+I + + A + +M SD PN YTF+ ++
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
CA+ + + G HA ++ LG + V N ++ +YA C
Sbjct: 326 SGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKC------------------- 366
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
GQ++ + +F +M ++ VSWS +I GY Q EA E ++M++ G
Sbjct: 367 ------------GQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEG 414
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P + L+AC + L+ G+ +HAYV G+E ++ +A+I+MY KCG IE A
Sbjct: 415 PKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEAS 474
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD+ N D+ ++T++I+G A H S I+LF ++ G+ P+
Sbjct: 475 RIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAG 534
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+MS+ Y I P +HYGC++DLL RAG L A+ ++ MP D+ V L
Sbjct: 535 LVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTL 594
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACRVHGDV+ G+ T E +++ + G H+ L+NIYAS +W +R+ M+ V
Sbjct: 595 LRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVI 654
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
K PG S I+V +V FV+G+R++ E+I +L
Sbjct: 655 KEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNML 688
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 46/341 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + G R+F + R W +I G +A + +M RS ++YTF+ L
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+ACAD+ L G HAQ ++ G++ FV N L +Y C
Sbjct: 225 KACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC------------------- 265
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G++ +F+KM ++ VSW+ +I VQ+ + A++ F M+
Sbjct: 266 ------------GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN ++ CA L ++ G +HA + G+ + + +I+ MYAKCG + ++
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335
+F M RD+ +++++I+G + A EL M++EG P E
Sbjct: 374 VIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFA------------ 421
Query: 336 YGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLN 373
++ G +LE K++ V + +E VL AL+N
Sbjct: 422 LASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALIN 462
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 32/287 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFI 94
G L + R+F + + W T+I G+ N+ +A L+K M + S + + S
Sbjct: 63 GHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLA 122
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+AC S + G + H ++ G + FV + LL +Y + R++F R+V
Sbjct: 123 HKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNV 182
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SWT++I G ++G KEAL +F+ M
Sbjct: 183 VSWTAIITGLVRAG-------------------------------YNKEALVYFSEMWRS 211
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+ AL ACA GAL+ GR IHA + G ++ + + MY KCG +E
Sbjct: 212 RVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
++F+ M RDV ++T++I+ L Q A++ F+RM+ V PNE
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNE 318
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 134 ATCNCMDPA---RKLFDMSVNRDVISWTSL------INGYAKSGQISIARQMFDKMPEKN 184
A+ C+D R ++S N IS T L + K+G + AR+MFDKM +K+
Sbjct: 20 ASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKD 79
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+SW+ +I+GYV + EAL F M++ G R + + A AC ++ G +H
Sbjct: 80 EISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLH 139
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y + G+ + +G+A++DMY K G I VF MP R+V ++T++I+GL +
Sbjct: 140 GYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNK 199
Query: 304 SAIELFMRM 312
A+ F M
Sbjct: 200 EALVYFSEM 208
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 63/217 (29%)
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE----------- 315
K G + A +FD M +D ++T+LISG N + S+ A+ LF M++E
Sbjct: 61 KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120
Query: 316 ------GVVPNESMSEI---YGIEPGVQHY----GCLVDLLGRAGMLEAAKKVVREMP-- 360
G+ + + E+ Y ++ G+ + L+D+ + G + ++V EMP
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180
Query: 361 --------------------------------IEPDNYVLGALLNACRVHGDVDLGKETV 388
+E D+Y L AC G ++ G+E
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
+++ D V ++N A+ +N K+ G+
Sbjct: 241 AQAMKKGFD---VSSFVANTLAT--MYNKCGKLEYGL 272
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/463 (32%), Positives = 249/463 (53%), Gaps = 42/463 (9%)
Query: 1 MKQIKQIQSHLTVSGTLWD-PFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+K ++Q+ +HL VSG+ + C+A G + + +LF + +F++N +
Sbjct: 32 LKPLQQVHAHLIVSGSYRSRALLTKLLTLACTA---GSILYTRQLFFSITNPDSFLFNAI 88
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
I+ ++ A Y++M+ +NYTF+ +++ACAD S L +G H+ V+ G+
Sbjct: 89 IKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVLVCGY 148
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+S FV +LI YAKSG + A+++FD+
Sbjct: 149 DSDSFV-------------------------------QAALIAFYAKSGDVGEAKKVFDR 177
Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
MPE+ ++W++MI+GY Q KEA+ F M+ G + A V L+AC+ GALD G
Sbjct: 178 MPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLG 237
Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
W+H Y+ N +++++LGT++I+MY +CG + A VFD M R+V A+T++ISG H
Sbjct: 238 CWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMH 297
Query: 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
AIELF M++ G M + YG+ P V+H+ C+VD+LGRAG L A + ++++
Sbjct: 298 GYGREAIELFRLMRIHG------MRQDYGLVPRVEHHVCMVDMLGRAGFLNEAFQYIKDL 351
Query: 360 PI-EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418
E + A+L AC++H ++DLG + E L+ ++ +VLLSN+YA + V
Sbjct: 352 KQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPENPSHYVLLSNVYALAGRMERV 411
Query: 419 EKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
E VR M ++K G S+IEV F G+R++ EI
Sbjct: 412 EMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPETTEI 454
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/509 (30%), Positives = 262/509 (51%), Gaps = 34/509 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRG 62
K++ + LT SG P + F + G++ +LF + L + W T++
Sbjct: 26 KELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSS 85
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F+ + + L+ +M R ++ + + CA L H +++G +
Sbjct: 86 FSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTS 145
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
V N L+ +Y C + +++F+ + V+SWT +++ K + R++F +MPE
Sbjct: 146 VKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPE 205
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQGRW 241
+NAV+W+ M+ GY+ +E LE M CG N + L+ACA G L GRW
Sbjct: 206 RNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRW 265
Query: 242 IHAYVDRNGIEL-------DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+H Y + + + D+++GTA++DMYAKCG I+++ +VF M R+V + +L S
Sbjct: 266 VHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFS 325
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE----------SMSEI-------------YGIEP 331
GLA H + I++F +M E V P++ S S I YG+EP
Sbjct: 326 GLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEP 384
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
V HY C+VDLLGRAG++E A+ ++REMP+ P+ VLG+LL +C VHG V++ + L
Sbjct: 385 KVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKREL 444
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ S + +L+SN+Y + + + + +R + +RK+PG S I V+ V F SG
Sbjct: 445 IQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSG 504
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
+R++ +EI L L + + ++S + D
Sbjct: 505 DRSHPRTKEIYLKLNEVIERIRSAGYVPD 533
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 234/465 (50%), Gaps = 56/465 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S G+L+ ++F + R+ W +MI G+A + + L+ +M + P+ +T +
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
IL ACA T L G H + +S FV N L+ +YA C
Sbjct: 357 TILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKC---------------- 400
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
G + A +F +M K+ VSW+ MI GY + L EAL F MQ
Sbjct: 401 ---------------GSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ 445
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
+PN + L ACA L AL++G+ IH ++ RNG LD + A++DMY KCG +
Sbjct: 446 Y-NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALG 504
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---------- 322
A +FD +P +D+ ++T +I+G H + AI F M+ G+ P+E
Sbjct: 505 LARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 564
Query: 323 ----MSEIYG----------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
+ E +G IEP +HY C+VDLL RAG L A K ++ MPIEPD +
Sbjct: 565 HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIW 624
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
GALL CR++ DV L ++ E + E ++ G +VLL+NIYA E+W V+K+R +
Sbjct: 625 GALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRR 684
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
+RK PGCS IE+ G V FV+G+ ++ L +I LLL +K
Sbjct: 685 GLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMK 729
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 166/350 (47%), Gaps = 38/350 (10%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+N I F E +A L Q + D T+ +L+ CAD + G H+ +
Sbjct: 71 YNIEICRFCELGNLRRAMELINQSPKPDL--ELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG------- 168
E + + L+ +Y TC + R++FD N V W L+NGYAK G
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188
Query: 169 -----------QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
++ AR++FD++ +++ +SW++MI+GYV L ++ L+ F M L G
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
+ A +V + C+ G L GR +H Y + ++ L ++DMY+K G + +A V
Sbjct: 249 TDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQV 308
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYG 337
F++M R V ++TS+I+G A S ++ LF M+ EG+ P +I+ I +
Sbjct: 309 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISP-----DIFTITTILHACA 363
Query: 338 CLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLN---ACRVHGDV 381
C G+LE K V ++E ++ D +V AL++ C GD
Sbjct: 364 C-------TGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDA 406
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 160/357 (44%), Gaps = 47/357 (13%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
+LF L R WN+MI G+ K L++QML + T ++ C++T
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
L +G H I+ + + LN NC L DM
Sbjct: 266 MLLLGRALHGYAIKASF-GKELTLN---------NC------LLDM-------------- 295
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
Y+KSG ++ A Q+F+ M E++ VSW++MI GY + L ++ F+ M+ G P+
Sbjct: 296 -YSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFT 354
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
I L ACA G L+ G+ +H Y+ N ++ D+ + A++DMYAKCG + A SVF M
Sbjct: 355 ITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQ 414
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342
+D+ ++ ++I G + + A+ LF+ MQ Y +P C++
Sbjct: 415 VKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-------------YNSKPNSITMACILPA 461
Query: 343 LGRAGMLEAAKKV---VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
LE +++ + D +V AL++ G + L + + + E+ L
Sbjct: 462 CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDL 518
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/470 (31%), Positives = 231/470 (49%), Gaps = 55/470 (11%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ + DL R F C+ R+ WN M+ G+A+ +A L+ +M+ + P+ T+
Sbjct: 205 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWV 264
Query: 93 FILRACADT--SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150
++ AC+ CL L+ R L +
Sbjct: 265 TVISACSSRGDPCLAASLV---------------------------------RTLHQKRI 291
Query: 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210
+ T+L++ YAK G + AR++F+ MP +N V+W++MI GY Q A+E F
Sbjct: 292 QLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKE 351
Query: 211 MQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269
M P+ +V ++AC LGAL+ G W+ ++ N I+L I A+I MY++CG
Sbjct: 352 MITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCG 411
Query: 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------- 320
+E A VF M RDV +Y +LISG A H AI L M+ G+ P+
Sbjct: 412 SMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLT 471
Query: 321 --------ESMSEIYGI--EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
E +++ +P + HY C+VDLLGR G LE AK+ + MP+EP V G+
Sbjct: 472 ACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGS 531
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LLNA R+H V+LG+ L E D+ G +LLSNIYAS +W VE++R M+ V
Sbjct: 532 LLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV 591
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
+K G S +E G + +F+ +R++ ++I LL + K ++ + D
Sbjct: 592 KKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD 641
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/438 (25%), Positives = 194/438 (44%), Gaps = 96/438 (21%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
F++ +M+R ++ + K +Y+QM P+ + + ++++ G+ H
Sbjct: 64 NVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG-----GIGFH 118
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM--SVNRDVISWTSLINGYAKSGQ 169
A V++LG S FV N ++ +YA + ARK+FD R V W ++++GY K
Sbjct: 119 AHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWES 178
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVD------------------------------ 199
A+ +FD MPE+N ++W+AM+ GY +V
Sbjct: 179 EGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQN 238
Query: 200 -LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG 258
L +EAL F+ M G P+ V ++AC+ G + + + I+L+ +
Sbjct: 239 GLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVR 298
Query: 259 TAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGV 317
TA++DMYAK G +++A +F++MP R+V + S+I+G A + QSA AIELF M + +
Sbjct: 299 TALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 358
Query: 318 VPNE-SMSEIYG----------------------IEPGVQHYGCLVDLLGRAGMLEAAKK 354
P+E +M + I+ + + ++ + R G +E AK+
Sbjct: 359 TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418
Query: 355 VVREMP----------------------------------IEPDNYVLGALLNACRVHGD 380
V +EM IEPD +L AC G
Sbjct: 419 VFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGL 478
Query: 381 VDLGKETVESLVERSLDH 398
++ G++ ES+ + ++DH
Sbjct: 479 LEEGRKVFESIKDPAIDH 496
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 126/304 (41%), Gaps = 58/304 (19%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
K+IQ + V L D +A GDL +LF + R WN+MI G+A
Sbjct: 289 KRIQLNCFVRTALLDMYA-----------KFGDLDSARKLFNTMPGRNVVTWNSMIAGYA 337
Query: 65 EKNEPIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVG-----LICHAQVIRLG 118
+ + A L+K+M+ + L P+ T ++ AC L +G + Q I+L
Sbjct: 338 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ-IKLS 396
Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
+ N ++ +Y+ C M+ A+++F RDV+S+ +LI+G+A G
Sbjct: 397 ISGH----NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGH--------- 443
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
EA+ + M+ G P+ +G LTAC+ G L++
Sbjct: 444 ----------------------GVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEE 481
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLA 297
GR + + I+ ++D+ + G +E A + MP Y SL++
Sbjct: 482 GRKVFESIKDPAIDHY----ACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASR 537
Query: 298 NHDQ 301
H Q
Sbjct: 538 IHKQ 541
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 133/305 (43%), Gaps = 34/305 (11%)
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F+ N +++M+ Y + + + + MQ CG RP+ A + L A G
Sbjct: 56 LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPD-AFVYPILIKSAGTGG 114
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLI 293
+ HA+V + G D + A+IDMYA+ G I A VFD +P+ R V + +++
Sbjct: 115 IG----FHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNESM----SEIYGIEPGVQHYGCLVD-------- 341
SG + A LF M V+ +M +++ +E +++ C+ +
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNA 230
Query: 342 -LLGRA--GMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
L G A G+ E A ++ EM IEPD +++AC GD L V +L ++
Sbjct: 231 MLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKR 290
Query: 396 LDHEG-VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
+ V L ++YA + K+ M PG +++ + ++ + ++
Sbjct: 291 IQLNCFVRTALLDMYAKFGDLDSARKLFNTM--------PGRNVVTWNSMIAGYAQNGQS 342
Query: 455 NVLME 459
+ +E
Sbjct: 343 AMAIE 347
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 248/467 (53%), Gaps = 34/467 (7%)
Query: 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML---RSD--FLPNNYTFS 92
L + +F L F+ ++R P++ F L+ ++ SD FLP + FS
Sbjct: 104 LRYAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRLFSRLRCAHGSDLPFLP--FAFS 161
Query: 93 FILRACADTSCLFVGLICHAQVIRLG-WESYDFVLNGLLHLYATCNCMDPARKLFDMSVN 151
+ ++ A L HA + LG ++ + FV N L+ Y C + ARK+FD +
Sbjct: 162 PLAKSAAAARSLHAAASAHAVSLLLGGFDKHRFVENSLISAYVACGDVGAARKVFDEMLV 221
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
+DVISWTS++ Y++ + A ++F P K+ V+W+AM+ GY Q + +ALE F M
Sbjct: 222 KDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQM 281
Query: 212 QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
+ G + + GA++ACA LGA+ + W+ +RNG+ ++++G+ ++DMYAKCG I
Sbjct: 282 AVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLI 341
Query: 272 ETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM-QLEGVVPNE--------- 321
+ A VF+ M +++V+ Y+S+I GLA+H ++ I LF M + V PN
Sbjct: 342 DEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLTA 401
Query: 322 ---------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY 366
M + YGI P HY C+VDLL R+G++ A +V+ M +EP
Sbjct: 402 CSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGG 461
Query: 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
V GALL ACR+HG+ ++ K E L + G +VLLSN AS +W+ V K+R+ M
Sbjct: 462 VWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLSNTLASAGEWDEVSKLRKLMR 521
Query: 427 DNEVRKVPGCSLIE-VDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
++K P S E DG V +F +G+ T+ M EI L + + L
Sbjct: 522 IRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHEIKKRLLELREKL 568
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 39/310 (12%)
Query: 17 LWDPFAVGKIIGFCSA----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKA 72
++D V +I + S S I D+ +F + W M+ G+A+ P+KA
Sbjct: 215 VFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKA 274
Query: 73 FALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132
++QM + + + + + ACA + R G V +GL+ +
Sbjct: 275 LEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDM 334
Query: 133 YATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI 192
YA C +D ARK+F+ +++V +++S+I G A G+ + +F+ M + V
Sbjct: 335 YAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVE----- 389
Query: 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGI 251
PNH +G LTAC+ G + +GR+ A + DR GI
Sbjct: 390 -------------------------PNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGI 424
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSM---PNRDVF-AYTSLISGLANHDQSASAIE 307
++D+ A+ G + A + SM P+ V+ A N + + A E
Sbjct: 425 LPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAE 484
Query: 308 LFMRMQLEGV 317
R++ EG+
Sbjct: 485 HLFRLEPEGI 494
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 230/454 (50%), Gaps = 55/454 (12%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +G LF + R W T+I + + A + +M SD PN YTF+ ++
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
CA+ + + G HA ++ LG + V N ++ +YA C
Sbjct: 326 SGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKC------------------- 366
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
GQ++ + +F +M ++ VSWS +I GY Q EA E ++M++ G
Sbjct: 367 ------------GQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEG 414
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P + L+AC + L+ G+ +HAYV G+E ++ +A+I+MY KCG IE A
Sbjct: 415 PKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEAS 474
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
+FD+ N D+ ++T++I+G A H S I+LF ++ G+ P+
Sbjct: 475 RIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAG 534
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
+MS+ Y I P +HYGC++DLL RAG L A+ ++ MP D+ V L
Sbjct: 535 LVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTL 594
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L ACRVHGDV+ G+ T E +++ + G H+ L+NIYAS +W +R+ M+ V
Sbjct: 595 LRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVI 654
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
K PG S I+V +V FV+G+R++ E+I +L
Sbjct: 655 KEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNML 688
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 150/341 (43%), Gaps = 46/341 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + G R+F + R W +I G +A + +M RS ++YTF+ L
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+ACAD+ L G HAQ ++ G++ FV N L +Y C
Sbjct: 225 KACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC------------------- 265
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G++ +F+KM ++ VSW+ +I VQ+ + A++ F M+
Sbjct: 266 ------------GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN ++ CA L ++ G +HA + G+ + + +I+ MYAKCG + ++
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335
+F M RD+ +++++I+G + + A EL M++EG P E
Sbjct: 374 VIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFA------------ 421
Query: 336 YGCLVDLLGRAGMLEAAKKV---VREMPIEPDNYVLGALLN 373
++ G +LE K++ V + +E VL AL+N
Sbjct: 422 LASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALIN 462
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 32/287 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM-LRSDFLPNNYTFSFI 94
G L + R+F + + W T+I G+ N+ +A L+K M + S + + S
Sbjct: 63 GHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLA 122
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+AC S + G + H ++ G + FV + LL +Y + R++F R+V
Sbjct: 123 HKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNV 182
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SWT++I G ++G KEAL +F+ M
Sbjct: 183 VSWTAIITGLVRAG-------------------------------YNKEALVYFSEMWRS 211
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+ AL ACA GAL+ GR IHA + G ++ + + MY KCG +E
Sbjct: 212 RVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYG 271
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
++F+ M RDV ++T++I+ L Q A++ F+RM+ V PNE
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNE 318
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 134 ATCNCMDPA---RKLFDMSVNRDVISWTSL------INGYAKSGQISIARQMFDKMPEKN 184
A+ C+D R ++S N IS T L + K+G + AR+MFDKM +K+
Sbjct: 20 ASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKD 79
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+SW+ +I+GYV + EAL F M++ G R + + A AC ++ G +H
Sbjct: 80 EISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLH 139
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
Y + G+ + +G+A++DMY K G I VF MP R+V ++T++I+GL +
Sbjct: 140 GYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNK 199
Query: 304 SAIELFMRM 312
A+ F M
Sbjct: 200 EALVYFSEM 208
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 63/217 (29%)
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE----------- 315
K G + A +FD M +D ++T+LISG N + S+ A+ LF M++E
Sbjct: 61 KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120
Query: 316 ------GVVPNESMSEI---YGIEPGVQHY----GCLVDLLGRAGMLEAAKKVVREMP-- 360
G+ + + E+ Y ++ G+ + L+D+ + G + ++V EMP
Sbjct: 121 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 180
Query: 361 --------------------------------IEPDNYVLGALLNACRVHGDVDLGKETV 388
+E D+Y L AC G ++ G+E
Sbjct: 181 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 240
Query: 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425
+++ D V ++N A+ +N K+ G+
Sbjct: 241 AQAMKKGFD---VSSFVANTLAT--MYNKCGKLEYGL 272
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 237/473 (50%), Gaps = 33/473 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
+QI S +G D + G +I S G L R+ L+ + W +MI G+
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDM--YSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYV 422
Query: 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
+ A A +K+M + P+N + + CA + GL HA+V G+
Sbjct: 423 QHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSG--- 479
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
DV W +L+N YA+ G+I A F+++ K+
Sbjct: 480 ----------------------------DVSIWNALVNLYARCGRIREAFSSFEEIEHKD 511
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
++W+ +++G+ Q L +EAL+ F M G + N V AL+A A L + QG+ IHA
Sbjct: 512 EITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHA 571
Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
V + G + +G A+I +Y KCG E A F M R+ ++ ++I+ + H +
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631
Query: 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
A++ F +M+ EG+ +SMS+ YGI P HY C++D+ GRAG L+ AKK V EMPI D
Sbjct: 632 ALDFFDQMKKEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAAD 691
Query: 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424
V LL+AC+VH ++++G+ + L+E +VLLSN YA T +W ++VR+
Sbjct: 692 AMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKM 751
Query: 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
M D VRK PG S IEV VV F G+R + L E+I L I+ + + +
Sbjct: 752 MRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 804
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/402 (27%), Positives = 187/402 (46%), Gaps = 57/402 (14%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+++ Q+ S+L +G D G ++ GD+ +F +WN ++
Sbjct: 260 LQKGTQLHSYLFKAGMSSDYIMEGSLLDL--YVKCGDVETALVIFNLGNRTNVVLWNLIL 317
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
F + N+ K+F L+ QM + PN +T+ ILR C T + +G H+ ++ G+E
Sbjct: 318 VAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFE 377
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
S D ++G+L I+ Y+K G + AR++ + +
Sbjct: 378 S-DMYVSGVL------------------------------IDMYSKYGWLEKARRVLEML 406
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
EK+ VSW++MI GYVQ + K+AL F MQ CG P++ G+ A++ CA + A+ QG
Sbjct: 407 KEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGL 466
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IHA V +G D+ + A++++YA+CG I A S F+ + ++D + L+SG A
Sbjct: 467 QIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSG 526
Query: 301 QSASAIELFMRMQLEGVVPN--------ESMSEIYGIEPGVQHYG--------------- 337
A+++FMRM GV N + + + I+ G Q +
Sbjct: 527 LHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN 586
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
L+ L G+ G E AK EM E + ++ +C HG
Sbjct: 587 ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHG 627
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 155/345 (44%), Gaps = 55/345 (15%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
R+F L R W M+ G+A+ +A LY+QM R+ +P Y S +L +C
Sbjct: 98 RVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAE 157
Query: 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162
G HAQ + G+ S FV N L+ LY C
Sbjct: 158 LFAQGRSVHAQGYKQGFCSETFVGNALITLYLRC-------------------------- 191
Query: 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222
G +A ++F MP ++ V+++ +I+G+ Q + ALE F MQ G P+
Sbjct: 192 -----GSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVT 246
Query: 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282
I L ACA LG L +G +H+Y+ + G+ D I+ +++D+Y KCG +ETA +F+
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGN 306
Query: 283 NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE--------------------- 321
+V + ++ + A + ELF +MQ G+ PN+
Sbjct: 307 RTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQ 366
Query: 322 --SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD 364
S+S G E + G L+D+ + G LE A++V+ EM E D
Sbjct: 367 IHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKD 410
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 42/310 (13%)
Query: 22 AVGKIIGFCSASDIGD-----------LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPI 70
A G GFCS + +G+ R+F + +R T +NT+I G A+
Sbjct: 167 AQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGE 226
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130
A ++++M S P+ T S +L ACA L G H+ + + G S D+++ G
Sbjct: 227 HALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSS-DYIMEG-- 283
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA 190
SL++ Y K G + A +F+ N V W+
Sbjct: 284 ----------------------------SLLDLYVKCGDVETALVIFNLGNRTNVVLWNL 315
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
++ + Q++ ++ E F MQ G RPN L C G +D G IH+ + G
Sbjct: 316 ILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTG 375
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
E D+ + +IDMY+K G +E A V + + +DV ++TS+I+G H+ A+ F
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFK 435
Query: 311 RMQLEGVVPN 320
MQ G+ P+
Sbjct: 436 EMQKCGIWPD 445
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 151/342 (44%), Gaps = 63/342 (18%)
Query: 144 KLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKE 203
K + +D I LI+ Y+K+G + AR++F+++ ++ VSW AM++GY Q L +E
Sbjct: 67 KAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEE 126
Query: 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263
AL + M G P + L++C QGR +HA + G + +G A+I
Sbjct: 127 ALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALIT 186
Query: 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--- 320
+Y +CG A VF MP+RD + +LISG A A+E+F MQ G+ P+
Sbjct: 187 LYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVT 246
Query: 321 -----ESMSEIYGIEPGVQHY---------------GCLVDLLGRAGMLEAAKKV----- 355
+ + + ++ G Q + G L+DL + G +E A +
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGN 306
Query: 356 -----------------------------VREMPIEPDNYVLGALLNACRVHGDVDLGKE 386
++ I P+ + +L C G++DLG E
Sbjct: 307 RTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLG-E 365
Query: 387 TVESLVERSLDHEGVHV--LLSNIYASTEQWNGVEKVRRGME 426
+ SL ++ ++V +L ++Y+ ++ +EK RR +E
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYS---KYGWLEKARRVLE 404
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 12/200 (6%)
Query: 1 MKQIKQIQSHLTVSG-----TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFI 55
M+Q QI + + VSG ++W+ A+ + C G + + F ++++
Sbjct: 462 MRQGLQIHARVYVSGYSGDVSIWN--ALVNLYARC-----GRIREAFSSFEEIEHKDEIT 514
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN ++ GFA+ +A ++ +M +S N +TF L A A+ + + G HA+VI
Sbjct: 515 WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVI 574
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
+ G V N L+ LY C + A+ F R+ +SW ++I ++ G+ A
Sbjct: 575 KTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALD 634
Query: 176 MFDKMPEKNAVSWSAMINGY 195
FD+M ++ + +M + Y
Sbjct: 635 FFDQMKKEGLSYFKSMSDKY 654
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 125/305 (40%), Gaps = 51/305 (16%)
Query: 219 NHAGIVGALTACAFLGALDQGR-W-----IHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
H G+ ACA GR W IHA G+ D I+G +ID+Y+K G +
Sbjct: 35 QHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVL 94
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------S 322
A VF+ + RD ++ +++SG A + A+ L+ +M GVVP +
Sbjct: 95 PARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCT 154
Query: 323 MSEIYGIEPGVQHYG-------------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+E++ V G L+ L R G A++V +MP D
Sbjct: 155 KAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMP-HRDTVTFN 213
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVH---VLLSNIYASTEQWNGVEK------ 420
L++ H G+ +E E + G+ V +S++ A+ ++K
Sbjct: 214 TLISG---HAQCAHGEHALEIFEE--MQSSGLSPDCVTISSLLAACASLGDLQKGTQLHS 268
Query: 421 --VRRGMEDNEVRKVPGCSLI----EVDGVVCEFVSGERTNVLMEEIVLLLFG-IDKHLK 473
+ GM + + + L +V+ + F G RTNV++ ++L+ FG I+ K
Sbjct: 269 YLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAK 328
Query: 474 SLCFF 478
S F
Sbjct: 329 SFELF 333
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/539 (29%), Positives = 259/539 (48%), Gaps = 104/539 (19%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSAS-DIGDLS----HGYRLFVCLQYRTTFI 55
++ KQIQ+ L L D + K++ F S D S H R + ++F
Sbjct: 19 LRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVL-----SSFS 73
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
+NT++ +A ++P YK + + F P+ +TF + +AC S + G H V
Sbjct: 74 YNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVT 133
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
++G+ +V N L+H Y C A K+F RDV+SWT +I G+ ++G A
Sbjct: 134 KMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALD 193
Query: 176 MFDKMP-EKNAVSW-----------------------------------SAMINGYVQVD 199
F KM E N ++ +A+I+ YV+ +
Sbjct: 194 TFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCE 253
Query: 200 LFKEAL-------------------------------EHFNYMQL-CGFRPNHAGIVGAL 227
+A+ + F+ MQ G +P+ + L
Sbjct: 254 QLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVL 313
Query: 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287
+ACA LGA+D GRW+H Y+ GI+ D +GTAI+DMYAKCG IETA +F+ + +++VF
Sbjct: 314 SACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVF 373
Query: 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------------------ES 322
+ +L+ GLA H ++ F M G PN +
Sbjct: 374 TWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKM 433
Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDV- 381
S Y + P ++HYGC++DLL RAG+L+ A ++V+ MP++PD + GA+L+AC+ G +
Sbjct: 434 KSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLM 493
Query: 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIE 440
+L KE ++S ++ + GV+VLLSNI+A+ +W+ V ++RR M+ + KVPG S IE
Sbjct: 494 ELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 21/233 (9%)
Query: 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLING----YAKSGQISIARQMFDKMPEK- 183
LL L + C+ + +++ + RD++ +IN KS + +
Sbjct: 9 LLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSV 68
Query: 184 -NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ S++ +++ Y D + + + GF P+ AC + +G+ I
Sbjct: 69 LSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQI 128
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H V + G DI + +++ Y CG AC VF MP RDV ++T +I+G
Sbjct: 129 HGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLY 188
Query: 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
A++ F +M +EP + Y C++ GR G L K +
Sbjct: 189 KEALDTFSKMD---------------VEPNLATYVCVLVSSGRVGCLSLGKGI 226
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 252/497 (50%), Gaps = 64/497 (12%)
Query: 20 PFAVGKIIGFCS---ASDIGDLSHGYRLFVCLQYRTTFIW-NTMIRGFAEKNEPIKAFA- 74
P V +++ C+ A L++ ++F + + IW NT++RG+A
Sbjct: 62 PAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEE 121
Query: 75 ---LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
++ +M+ P+ YTF +L+ACA G H ++ G +++V
Sbjct: 122 AARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVA----- 176
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+LIN YA+ G + AR MFD+M + VS++AM
Sbjct: 177 --------------------------PTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I V+ L EAL F MQ G +P ++ L+ACA LGAL+ GRWIH Y+ + +
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+ + + TA+IDMYAKCG +E A VF M +RD A++ ++ ANH AI +F
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEE 330
Query: 312 MQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ +G+ P+ +SM E YGI G++HYGC+ DLL R+G
Sbjct: 331 MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSG 389
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
LE A K + E+PI+P + LL+AC HGDVD+GK E ++E H G +V+ SN
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
+ A+T +W + VR+ M + V KVPGCS IE+D +V EF +G+ ++ +E ++
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDE 509
Query: 468 IDKHLKSLCFFDDGNEV 484
+ + LK + + + + V
Sbjct: 510 VIEQLKLVGYVPNTSHV 526
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 231/471 (49%), Gaps = 65/471 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD RLF + R WNTM+ G ++ +A A++ M P + S+
Sbjct: 94 GDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM------PVRNSVSW-- 145
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DV 154
N ++ +A M A + F + + D
Sbjct: 146 -------------------------------NAMVSGFACSRDMSAAEEWFRNAPEKGDA 174
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QL 213
+ WT++++GY G + A + F+ MP +N VSW+A++ GYV+ +AL F M +
Sbjct: 175 VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVRE 234
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
+PN + + L C+ L AL G+ IH + + + ++ +GT+++ MY KCG + +
Sbjct: 235 ANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSS 294
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
AC +F M RDV A+ ++ISG A H AI LF RM+ EGV PN
Sbjct: 295 ACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIH 354
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
E M E+YGIEP V HY C+VDLL RAG LE A ++R MP EP G
Sbjct: 355 TGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYG 414
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
LL ACRV+ +++ + L+E+ G +V L+NIYA QW+ V +VRR M+DN
Sbjct: 415 TLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNA 474
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
V K PG S IE+ GV+ EF S +R + + I L + + +K++ + D
Sbjct: 475 VVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPD 525
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFS 92
DIG++ F + R WN ++ G+ + + A L++ M+R ++ PN T S
Sbjct: 186 DIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS 245
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L C++ S L G H ++L V L+ +Y C + A KLF R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 305
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV++W ++I+GYA+ G KEA+ F M+
Sbjct: 306 DVVAWNAMISGYAQHGD-------------------------------GKEAINLFERMK 334
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G PN V LTAC G D G R + GIE + + ++D+ + G +
Sbjct: 335 DEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKL 394
Query: 272 ETACSVFDSMP 282
E A + SMP
Sbjct: 395 ERAVDLIRSMP 405
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 41/286 (14%)
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
AR LFD D +S+ +L++ + SG AR++F MP ++ VSW+ M++G +
Sbjct: 68 ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 127
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNGIEL-DIILGT 259
+EA F M + +A + G AC+ + A ++ W RN E D +L T
Sbjct: 128 EEAKAVFLAMPVRNSVSWNAMVSG--FACSRDMSAAEE--WF-----RNAPEKGDAVLWT 178
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VV 318
A++ Y G + A F++MP R++ ++ ++++G + + A+ LF M E V
Sbjct: 179 AMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQ 238
Query: 319 PNESM--------SEIYGIEPGVQ-HYGC--------------LVDLLGRAGMLEAAKKV 355
PN S S + + G Q H C LV + + G L +A K+
Sbjct: 239 PNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKL 298
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
EM D A+++ HGD GKE + +L ER D EGV
Sbjct: 299 FGEMHTR-DVVAWNAMISGYAQHGD---GKEAI-NLFERMKD-EGV 338
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 239/473 (50%), Gaps = 57/473 (12%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G L +F ++ R WN++I G ++ + A +++ M S P+ T +
Sbjct: 217 LGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSL 276
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A A H V+R GW+ D+
Sbjct: 277 ASAIAQGGDGRSAKSLHCYVMRRGWDV------------------------------DDI 306
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
I+ ++++ YAK I A++MFD MP +++VSW+ +I GY+Q L EA+E + +MQ
Sbjct: 307 IAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKH 366
Query: 215 -GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
G + V L A + LGAL QG +HA + G+ +D+ +GT +ID+YAKCG +
Sbjct: 367 EGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAE 426
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
A +F+ MP R + ++ISGL H A A+ LF RMQ EG+ P+
Sbjct: 427 AMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSH 486
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
+ M Y I P +HY C+ D+LGRAG L+ A ++ MPI+PD+ V G
Sbjct: 487 AGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWG 546
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
ALL ACR+HG+V++GK ++L E ++ G +VL+SN+YA +W+GV++VR +
Sbjct: 547 ALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQN 606
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERT--NVLMEEIVLLLFGIDKHLKSLCFFDD 480
++K PG S IEV V F SG +T + EEI L + ++S+ + D
Sbjct: 607 LQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSD 659
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 169/414 (40%), Gaps = 100/414 (24%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S Y++F + R WN M+ G +A L+ +M+ + T S +L
Sbjct: 117 GRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVL 176
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C + LG D VL ++H+YA + +D +++
Sbjct: 177 PMC----------------VLLG----DQVLALVMHVYAVKHGLD-----------KELF 205
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+LI+ Y K G + A+ +F M ++ V+W+++I+G Q AL+ F M+ G
Sbjct: 206 VCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSG 265
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETA 274
P+ +V +A A G + +H YV R G ++ DII G AI+DMYAK IE A
Sbjct: 266 VSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAA 325
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG----IE 330
+FDSMP +D ++ +LI+G + + A+E + MQ +E + I G +
Sbjct: 326 QRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ-----KHEGLKAIQGTFVSVL 380
Query: 331 PGVQHYG-------------------------CLVDLLGRAGMLEAAKKVVREMP----- 360
P H G CL+DL + G L A + +MP
Sbjct: 381 PAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTG 440
Query: 361 -----------------------------IEPDNYVLGALLNACRVHGDVDLGK 385
I+PD+ +LL AC G VD G+
Sbjct: 441 PWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGR 494
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 169/396 (42%), Gaps = 64/396 (16%)
Query: 57 NTMIRGFAEKNEPIKAFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGLICHAQV 114
NT+I F+ P AF L + +L F P+ +TF ++RA + HA
Sbjct: 37 NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS---AAQLHACA 93
Query: 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIAR 174
+RLG V V + SL++ Y + G+IS A
Sbjct: 94 LRLGL------------------------------VRPSVFTSGSLVHAYLRFGRISEAY 123
Query: 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234
++FD+M E++ +W+AM++G + EA+ F M G + + L C LG
Sbjct: 124 KVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLG 183
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+H Y ++G++ ++ + A+ID+Y K G +E A VF M RD+ + S+IS
Sbjct: 184 DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIIS 243
Query: 295 GLANHDQSASAIELFMRMQLEGVVPN--ESMSEIYGIEPG------------VQHYG--- 337
G Q+A+A+++F M+ GV P+ +S I G V G
Sbjct: 244 GCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV 303
Query: 338 -------CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
+VD+ + +EAA+++ MP++ D+ L+ +G L E VE
Sbjct: 304 DDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ-DSVSWNTLITGYMQNG---LANEAVER 359
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426
HEG+ + + ++ + +++GM
Sbjct: 360 YGHMQ-KHEGLKAIQGTFVSVLPAYSHLGALQQGMR 394
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/509 (28%), Positives = 259/509 (50%), Gaps = 34/509 (6%)
Query: 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMIRG 62
+++ + LT SG P + F + G+++ +LF + L + W T++
Sbjct: 26 RELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTLLSS 85
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
F+ + + L+ +M R ++ + + CA L G H +++G+ +
Sbjct: 86 FSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTS 145
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
V N L+ +Y C + +++F + V+SWT +++ K + R++FD+MPE
Sbjct: 146 VKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPE 205
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQGRW 241
+N V+W+ M+ GY+ +E LE M CG N + L+ACA G L GRW
Sbjct: 206 RNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRW 265
Query: 242 IHAYVDRNGIELD-------IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
+H Y + + + +++GTA++DMYAKCG I+++ VF M R+V + +L S
Sbjct: 266 VHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFS 325
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEP 331
GLA H + I++F M E V P++ + YG+EP
Sbjct: 326 GLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDEGWRCFHSLQFYGLEP 384
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
V HY C+VD+LGRAG +E A+ ++REMP+ P+ VLG+LL +C VHG +++ + L
Sbjct: 385 KVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKREL 444
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ S H +L+SN+Y + + + + +R + + +RK+PG S I V+ V F SG
Sbjct: 445 IQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSG 504
Query: 452 ERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
+R++ +E+ L L + + ++S + D
Sbjct: 505 DRSHPRTKEVYLKLNEVIERIRSAGYVPD 533
>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 241/467 (51%), Gaps = 56/467 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F ++ R W+TM+ GF +P++A +Y +M R + ++
Sbjct: 152 GAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVM 211
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
+ACA T +G H ++R ++ DV+
Sbjct: 212 QACAATGDARMGASVHGYLLR-------------------------------HAMQMDVV 240
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
TSL++ YAK+G AR++F+ MP +N VSWSA+I+ Q EAL F MQ+ G
Sbjct: 241 ISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSG 300
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
PN +VGAL AC+ LG L G+ IH ++ R +ELD ++GTA+IDMY+KCG + +A
Sbjct: 301 LHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQ 359
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES------------- 322
+FD + +RD+ ++ +I+ H + A+ LF M+ V P+ +
Sbjct: 360 MLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSG 419
Query: 323 -----------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M YGIEPG +H C+VDLL R+G++E A +V + +P +L AL
Sbjct: 420 LVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVAL 479
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L+ C + ++LG+ T E ++E GV L+SN+YA+ + W V +VR+ M+D+ +
Sbjct: 480 LSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSK 539
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFF 478
K PGCS IE+ G + FV ++++ +I+ ++ +D ++ + +
Sbjct: 540 KAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYI 586
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 32/265 (12%)
Query: 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
WN ++ + P +A +++ L P++ TF+ L ACA L G + +
Sbjct: 72 WNALLAAHSRGASPHEALRVFRA-LPPAARPDSTTFTLALSACARLGDLATGEVVTDRAS 130
Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
G+ D+ +S++N YAK G + A +
Sbjct: 131 GAGY-------------------------------GNDIFVCSSVLNLYAKCGAMDDAVK 159
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+FD+M +++ V+WS M+ G+V +A+E + M+ G + IVG + ACA G
Sbjct: 160 VFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGD 219
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
G +H Y+ R+ +++D+++ T+++DMYAK G + A VF+ MP+R+ ++++LIS
Sbjct: 220 ARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQ 279
Query: 296 LANHDQSASAIELFMRMQLEGVVPN 320
LA + + A+ LF MQ+ G+ PN
Sbjct: 280 LAQYGNADEALGLFRMMQVSGLHPN 304
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 27/248 (10%)
Query: 160 LINGYAKSGQISIARQMFDKMPEKNAV--SWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
L YA++G ++ A P + +W+A++ + + EAL F + R
Sbjct: 42 LATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALPPAA-R 100
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P+ AL+ACA LG L G + G DI + ++++++YAKCG ++ A V
Sbjct: 101 PDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKV 160
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM-------------- 323
FD M RD ++++++G N Q AIE++MRM+ +G+ +E +
Sbjct: 161 FDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDA 220
Query: 324 ---SEIYG------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNA 374
+ ++G ++ V LVD+ + G+ + A++V MP D AL++
Sbjct: 221 RMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRND-VSWSALISQ 279
Query: 375 CRVHGDVD 382
+G+ D
Sbjct: 280 LAQYGNAD 287
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 245/499 (49%), Gaps = 57/499 (11%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
I H+ G D F +I S G L +F ++ R WN++I + +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINM--YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
N+P A +K M P+ T + + S + VIR W
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW------- 354
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
+++DV+ +L+N YAK G ++ A +FD++P K+ +
Sbjct: 355 -----------------------LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
SW+ ++ GY Q L EA++ +N M+ C PN V + A + +GAL QG IHA
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
+ +N + LD+ + T +ID+Y KCG +E A S+F +P + ++I+ L H + A
Sbjct: 452 LIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEA 511
Query: 306 IELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVD 341
++LF M E V + + M + YGI+P ++HYGC+VD
Sbjct: 512 LQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVD 571
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG LE A ++VR MPI+PD + GALL+AC+++G+ +LG + L+E ++ G
Sbjct: 572 LLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGY 631
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VLLSNIYA+TE+W GV KVR D +RK PG S + V F +G +T+ EI
Sbjct: 632 YVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEI 691
Query: 462 VLLLFGIDKHLKSLCFFDD 480
L + +KSL + D
Sbjct: 692 YKELKVLSAKMKSLGYVPD 710
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 171/381 (44%), Gaps = 61/381 (16%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F ++ S + D++H ++FV + + WN MI GF + A + +
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAH--KVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNR 212
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M + T + IL CA + + G++ H V++ G +S FV N L+++Y+
Sbjct: 213 MKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGR 272
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+ A+ +FD RD++SW S+I Y ++ S
Sbjct: 273 LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPS--------------------------- 305
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIIL 257
AL F MQL G RP+ +V + + L R I +V R ++ D+++
Sbjct: 306 ----TALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVI 361
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF-MRMQLEG 316
G A+++MYAK G + A +VFD +P +D ++ +L++G + ++ AI+ + M +
Sbjct: 362 GNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRD 421
Query: 317 VVPNE--------SMSEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAK 353
+PN+ + S + ++ G++ + CL+DL G+ G LE A
Sbjct: 422 TIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAM 481
Query: 354 KVVREMPIE---PDNYVLGAL 371
+ E+P + P N ++ +L
Sbjct: 482 SLFYEIPRDTSVPWNAIIASL 502
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 135/293 (46%), Gaps = 46/293 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM--------LRSDFLPN 87
GD+S F + + F WN++I + + +A Q+ LR DF
Sbjct: 68 GDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDF--- 124
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
YTF IL+AC L G H V ++G+E FV L+HL
Sbjct: 125 -YTFPPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLVHL--------------- 165
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
Y++ G + +A ++F MP K+ SW+AMI+G+ Q AL
Sbjct: 166 ----------------YSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
N M+ G + + + L CA + G IH +V ++G++ D+ + A+I+MY+K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
G ++ A VFD M RD+ ++ S+I+ ++ ++A+ F MQL G+ P+
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 108/194 (55%), Gaps = 11/194 (5%)
Query: 132 LYATCNCMDPARKLFDMSV----NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
L+ +C ++ +KL + + +++++ T LIN Y G IS++R FD + +KN S
Sbjct: 28 LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87
Query: 188 WSAMINGYVQVDLFKEALEHFNYM-QLCG---FRPNHAGIVGALTACAFLGALDQGRWIH 243
W+++I+ YV+ + EA+ N + +CG RP+ L AC +L G+ +H
Sbjct: 88 WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVH 144
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
V + G E D+ + +++ +Y++ G ++ A VF MP +DV ++ ++ISG + +A
Sbjct: 145 CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAA 204
Query: 304 SAIELFMRMQLEGV 317
A+ + RM+ EGV
Sbjct: 205 GALGVLNRMKGEGV 218
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/511 (31%), Positives = 256/511 (50%), Gaps = 51/511 (9%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
+P AV + C + G ++ LF + + WN MI + + + +A L+K+
Sbjct: 232 NPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKK 291
Query: 79 MLRSDFLPNNYTFSFILRA--------------CAD---TSCLFVGLICHAQV------- 114
M D + + +R C D + L GLI + ++
Sbjct: 292 MPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMF 351
Query: 115 IRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173
R+G ++D V N ++ Y+ MD A LF ++ +SW ++I+GYA++GQ+ A
Sbjct: 352 SRIG--AHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRA 409
Query: 174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
++F M EKN VSW+++I G++Q +L+ +AL+ M G +P+ + L+ACA L
Sbjct: 410 TEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANL 469
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
AL G +H Y+ ++G D+ +G A+I MYAKCG +++A VF + D+ ++ SLI
Sbjct: 470 AALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLI 529
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
SG A + + A + F +M E VVP+E M E + I
Sbjct: 530 SGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAI 589
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
EP +HY CLVDLLGR G LE A VR M ++ + + G+LL ACRVH +++LG+ E
Sbjct: 590 EPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAE 649
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L E + ++ LSN++A +W VE+VR M K PGCS IEV + F+
Sbjct: 650 RLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQHFL 709
Query: 450 SGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
S + + + I ++L + H++ C D
Sbjct: 710 SHDPAKLRPKNIQIILNTLAAHMRDKCNTSD 740
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 169/383 (44%), Gaps = 59/383 (15%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS 102
+LF + R WNTMI G+ N +A L+ D +P FS+ L T
Sbjct: 69 QLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELF------DVMPERDNFSWALMITCYTR 122
Query: 103 CLFVGLICHA-QVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
G + A +++ L + D N ++ YA + A+K+F+ +D++S+ S+
Sbjct: 123 ---KGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSM 179
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
+ GY ++G++ +A Q F+ M E+N VSW+ M+ GYV+ A + F + PN
Sbjct: 180 LAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIP----NPNA 235
Query: 221 AGIVGALTACAFLGALDQGR-------------W---IHAYVD-----------RNGIEL 253
V L A G + + R W I YV +
Sbjct: 236 VSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHK 295
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
D + T II+ Y + G ++ A V++ MP +D+ A T+L+SGL + + A ++F R+
Sbjct: 296 DSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIG 355
Query: 314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
VV SM Y R+G ++ A + R+MPI+ ++ +++
Sbjct: 356 AHDVVCWNSMIAGY----------------SRSGRMDEALNLFRQMPIK-NSVSWNTMIS 398
Query: 374 ACRVHGDVDLGKETVESLVERSL 396
G +D E +++ E+++
Sbjct: 399 GYAQAGQMDRATEIFQAMREKNI 421
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202
R F+M+ +++++++ S+I+ AK+ +I ARQ+FD+M +N VSW+ MI GY+ ++ +
Sbjct: 38 RIFFNMT-HKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVE 96
Query: 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFL--GALDQGRWIHAYVDRNGIELDIILGTA 260
EA E F+ M P AL + G L++ R + V +LD A
Sbjct: 97 EASELFDVM------PERDNFSWALMITCYTRKGKLEKARELLELVPD---KLDTACWNA 147
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
+I YAK G A VF+ MP +D+ +Y S+++G + + A++ F M VV
Sbjct: 148 MIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVV 205
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 132/303 (43%), Gaps = 56/303 (18%)
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N ++ + A + AR+LFD R+++SW ++I GY + + A ++FD MPE++
Sbjct: 52 NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNF 111
Query: 187 SWS--------------------------------AMINGYVQVDLFKEALEHFNYMQLC 214
SW+ AMI GY + F +A + F M
Sbjct: 112 SWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAK 171
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
++ + G AL ++ + +RN + ++++ Y K G + +A
Sbjct: 172 DLVSYNSMLAGYTQNGKMHLAL---QFFESMTERNVVSWNLMVAG-----YVKSGDLSSA 223
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY----GIE 330
+F+ +PN + ++ +++ GLA + + A A ELF RM + VV +M Y ++
Sbjct: 224 WQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVD 283
Query: 331 PGVQ-----------HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
V+ + +++ R G L+ A++V +MP + D AL++ +G
Sbjct: 284 EAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCK-DITAQTALMSGLIQNG 342
Query: 380 DVD 382
+D
Sbjct: 343 RID 345
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM--- 323
K G +E A +F +M ++++ Y S+IS LA + + A +LF +M L +V +M
Sbjct: 29 KLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAG 88
Query: 324 ----------SEIYGIEPGVQHY--GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
SE++ + P ++ ++ R G LE A++++ +P + D A+
Sbjct: 89 YLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAM 148
Query: 372 LNACRVHGDVDLGKETVESLVERSL 396
+ G + K+ E + + L
Sbjct: 149 IAGYAKKGQFNDAKKVFEQMPAKDL 173
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 245/467 (52%), Gaps = 56/467 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKN-EPIKAFALYKQMLRSDFLPNNYTFSFI 94
G + ++F + F W MI G+ +K +A L++ M+ + +PN++TFS
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST 382
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
L+ACA+ + L +G ++LG+ S + V N
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVAN--------------------------- 415
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SLI+ YA+SG+I AR+ FD + EKN +S++ +I+ Y + +EALE FN ++
Sbjct: 416 ----SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G + L+ A +G + +G IHA V ++G++L+ + A+I MY++CG IE+A
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------- 321
VF+ M +R+V ++TS+I+G A H + A+ELF +M EGV PNE
Sbjct: 532 FQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHV 591
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
SM +G+ P ++HY C+VD+LGR+G L A + + MP + D V
Sbjct: 592 GLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRT 651
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
L ACRVHG+++LGK + ++E+ ++LLSN+YAS +W+ V +R+ M++ +
Sbjct: 652 FLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXL 711
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
K GCS +EV+ V +F G+ ++ EI L + +K L +
Sbjct: 712 IKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGY 758
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 35/275 (12%)
Query: 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLIC 110
R W+ M+ FA N +A + M+ + + PN Y F+ RAC+ + VG
Sbjct: 131 RDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSI 190
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS-GQ 169
VI+ G+ + DV LI+ + K G
Sbjct: 191 FGFVIKTGY------------------------------LQSDVCVGCGLIDMFVKGRGD 220
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
+ A ++F+KMPE+NAV+W+ MI +Q EA++ F M G+ P+ + G ++A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA 280
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS---VFDSMPNRDV 286
CA + L G+ +H+ R+G+ LD +G +I+MYAKC + C+ +FD + + +V
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340
Query: 287 FAYTSLISGLANH-DQSASAIELFMRMQLEGVVPN 320
F++T++I+G A++LF M L V+PN
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPN 375
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 142/314 (45%), Gaps = 43/314 (13%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
+QS + V L D F G+ GDL +++F + R W MI +
Sbjct: 200 LQSDVCVGCGLIDMFVKGR----------GDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
+A L+ M+ S + P+ +T S ++ ACA+ L +G H+Q IR G V
Sbjct: 250 GYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309
Query: 127 NGLLHLYATCN---CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
L+++YA C+ M ARK+FD ++ +V SWT++I GY + G
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKG--------------- 354
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
GY + EAL+ F M L PNH L ACA L AL G +
Sbjct: 355 ----------GYDE-----EALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+ + G + ++I MYA+ G I+ A FD + +++ +Y ++I A + S
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459
Query: 304 SAIELFMRMQLEGV 317
A+ELF ++ +G+
Sbjct: 460 EALELFNEIEDQGM 473
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 34/254 (13%)
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130
KA + + M+ P+ T+S L+ C T +G + H
Sbjct: 49 KAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVH------------------- 89
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM-PEKNAVSWS 189
KL + D ++ SLI+ Y+K GQ A +F M ++ +SWS
Sbjct: 90 ------------EKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWS 137
Query: 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249
AM++ + ++ AL F M G+ PN A AC+ + G I +V +
Sbjct: 138 AMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKT 197
Query: 250 G-IELDIILGTAIIDMYAKC-GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIE 307
G ++ D+ +G +IDM+ K G + +A VF+ MP R+ +T +I+ L + AI+
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAID 257
Query: 308 LFMRMQLEGVVPNE 321
LF+ M G P+
Sbjct: 258 LFLDMIFSGYEPDR 271
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/500 (30%), Positives = 246/500 (49%), Gaps = 71/500 (14%)
Query: 6 QIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLS-------HGYRLFVCLQYRTTFIWN 57
Q+ H+ +G +PF +I +C S I H L VC +N
Sbjct: 77 QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVC--------YN 128
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
+I G++ + A L++QM + N T ++ CA L G HA +R
Sbjct: 129 ALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRF 188
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G + V N LL +Y C G + AR++F
Sbjct: 189 GLDGDLSVGNCLLTMYVRC-------------------------------GSVDFARKLF 217
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D MPEK ++W+AMI+GY Q L L+ + M+ G P+ +VG L++CA LGA
Sbjct: 218 DGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHA 277
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
GR + ++ +G + L A+I+MYA+CG + A ++FD M ++V ++T++I+G
Sbjct: 278 AGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYG 337
Query: 298 NHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGV 333
H Q A++LF M +P+ +M YG++PG
Sbjct: 338 MHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGP 397
Query: 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+HY C+VDLLGRAG LE A+K++ M +EPD V GALL AC++H +V+L + E ++E
Sbjct: 398 EHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIE 457
Query: 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGER 453
+ G +VLLSNI++ G+ +VR M + +++K PGCS +E G + F++G+R
Sbjct: 458 FEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDR 517
Query: 454 TNVLMEEIVLLLFGIDKHLK 473
T+ +EI +L G++ +K
Sbjct: 518 THPQAQEIYHMLDGLEDIIK 537
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 33/271 (12%)
Query: 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111
TT WN +R A + +A LY QML S PN +TF F ++CA S G H
Sbjct: 20 TTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLH 79
Query: 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD--VISWTSLINGYAKSGQ 169
VI+ G E FV L+ +Y C+ + ARK+FD + + + + +LI GY+ + +
Sbjct: 80 GHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSR 139
Query: 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229
S A +F +M K VS +A+ ++G +
Sbjct: 140 FSDAVLLFRQM-RKEGVSVNAVT------------------------------MLGLIPV 168
Query: 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289
CA L G +HA R G++ D+ +G ++ MY +CG ++ A +FD MP + + +
Sbjct: 169 CAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITW 228
Query: 290 TSLISGLANHDQSASAIELFMRMQLEGVVPN 320
++ISG A + + ++L+ +M+ G+VP+
Sbjct: 229 NAMISGYAQNGLAGHVLDLYRKMEFTGIVPD 259
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241
+ SW+A + + F+EAL + M G PN A +CA L G
Sbjct: 18 QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77
Query: 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA--YTSLISGLANH 299
+H +V + G E + + T++I MY KC I +A VFD + A Y +LI+G + +
Sbjct: 78 LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137
Query: 300 DQSASAIELFMRMQLEGVVPNE-SMSEIYGIEPGVQHYG--------------------- 337
+ + A+ LF +M+ EGV N +M + + G H G
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVG 197
Query: 338 -CLVDLLGRAGMLEAAKKVVREMP 360
CL+ + R G ++ A+K+ MP
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMP 221
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 241/463 (52%), Gaps = 28/463 (6%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
++ +I +HL + I C + D ++ R+F +Q ++N MI+
Sbjct: 19 RLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYAN--RVFSHIQNPNVLVFNAMIKC 76
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ P+++ + + M + YT++ +L++C+ S L G H ++IR G+
Sbjct: 77 YSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRL 136
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
+ G++ LY + M A+K+FD R+V+ W +I G+ SG + +F +M E
Sbjct: 137 GKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSE 196
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
++ VSW++MI+ + +EALE F M GF P+ A +V L A LG LD G+WI
Sbjct: 197 RSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWI 256
Query: 243 HAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
H+ + +G+ D I +G A++D Y K G +E A ++F M R+V ++ +LISG A + +
Sbjct: 257 HSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGK 316
Query: 302 SASAIELFMRMQLEG-VVPNES------------------------MSEIYGIEPGVQHY 336
I+LF M EG V PNE+ M E + +E +HY
Sbjct: 317 GEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHY 376
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
G +VDL+ R+G + A K ++ MP+ + + G+LL+ACR HGDV L + LV+
Sbjct: 377 GAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEP 436
Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLI 439
+ G +VLLSN+YA +W VEKVR M+ N +RK G S I
Sbjct: 437 GNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/472 (31%), Positives = 243/472 (51%), Gaps = 58/472 (12%)
Query: 52 TTFIWNTMIRGFAEKNEPI---KAFALYKQMLRSDFLPNNYTFSFILRACAD-------- 100
++W + +A+ P +AF L+ MLRS PN +T S +L++ +
Sbjct: 69 NVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVC 128
Query: 101 -----------TSCLFVGL--------ICHAQVIRLGWE----SYDFVLNGLLHLYATCN 137
S L VG +C + R ++ S V N ++ Y
Sbjct: 129 QVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAG 188
Query: 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ 197
++ AR++FD V RD ISW +L++GY + G +AR +FD+MP++N SW+ MI+ +
Sbjct: 189 DVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSE 248
Query: 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
V L+ +++ FN M+ FRP+ A + ++ACA LG L R ++ + + +E++ +
Sbjct: 249 VGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHV 308
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317
+++DM+AKCGC A +F M +DV +Y ++S LA+H A++LF +M G+
Sbjct: 309 HNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGL 368
Query: 318 VPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353
P+ E+M Y IE HY C+VDL GR G++E A
Sbjct: 369 QPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAH 428
Query: 354 KVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413
V+ MP++P + GALLNACR H ++D+G+ L+ + G +VLLSN A ++
Sbjct: 429 YFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPMNPGNYVLLSNTLAWSQ 488
Query: 414 QWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
QW+ V VR+ M N + K G S +EV+ VV EF+ G+ ++ +EI +L
Sbjct: 489 QWDAVGDVRQLMRGNGIDKNTGFSWVEVESVVHEFLMGDFSHPSFDEICGIL 540
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 117/287 (40%), Gaps = 31/287 (10%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM--SVNRDVISWTSLINGYAKSG 168
HAQ++ G + L A+ + AR +FD + + +V WT+ ++ YAK
Sbjct: 28 HAQLLLRG---LPLPARAAVTLIASSSSPQYARAIFDSVPAASANVYLWTATVSSYAKHA 84
Query: 169 QISIARQMFDKM-------PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-H 220
++A + F P N + S+++ ++ + + ++ G + H
Sbjct: 85 SPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQVHGFLVKAGLASSLH 144
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280
G L + L + R + + R+ ++++G A++ Y K G +E A VFD
Sbjct: 145 VGAT-LLDSYGNLCRVKDARRVFDEMPRS----NVVVGNAMVSGYVKAGDVEAARQVFDG 199
Query: 281 MPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340
M RD ++ +L+SG + A +LF M P +++ + G
Sbjct: 200 MVERDSISWNTLMSGYLRRGDAGLARDLFDEM------PQRNVNSWNMMISACSEVGLWA 253
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
D + A +R M PD + L++AC G + + ++
Sbjct: 254 DSV-------AVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQV 293
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 231/471 (49%), Gaps = 65/471 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD RLF + R WNTM+ G ++ +A A++ M P + S+
Sbjct: 94 GDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM------PVRNSVSW-- 145
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DV 154
N ++ +A M A + F + + D
Sbjct: 146 -------------------------------NAMVSGFACSRDMSAAEEWFRNAPEKGDA 174
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QL 213
+ WT++++GY G + A + F+ MP +N VSW+A++ GYV+ +AL F M +
Sbjct: 175 VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVRE 234
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
+PN + + L C+ L AL G+ IH + + + ++ +GT+++ MY KCG + +
Sbjct: 235 ANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSS 294
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
AC +F M RDV A+ ++ISG A H AI LF RM+ EGV PN
Sbjct: 295 ACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIH 354
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
E M E+YGIEP V HY C+VDLL RAG LE A ++R MP EP G
Sbjct: 355 TGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYG 414
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
LL ACRV+ +++ + L+E+ G +V L+NIYA QW+ V +VRR M+DN
Sbjct: 415 TLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNA 474
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
V K PG S IE+ GV+ EF S +R + + I L + + +K++ + D
Sbjct: 475 VVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPD 525
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFS 92
DIG++ F + R WN ++ G+ + + A L++ M+R ++ PN T S
Sbjct: 186 DIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS 245
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L C++ S L G H ++L V L+ +Y C + A KLF R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 305
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV++W ++I+GYA+ G KEA+ F M+
Sbjct: 306 DVVAWNAMISGYAQHGD-------------------------------GKEAINLFERMK 334
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G PN V LTAC G D G R + GIE + + ++D+ + G +
Sbjct: 335 DEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKL 394
Query: 272 ETACSVFDSMP 282
E A + SMP
Sbjct: 395 ERAVDLIRSMP 405
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 41/286 (14%)
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
AR LFD D +S+ +L++ + SG AR++F MP ++ VSW+ M++G +
Sbjct: 68 ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 127
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNGIEL-DIILGT 259
+EA F M + +A + G AC+ + A ++ W RN E D +L T
Sbjct: 128 EEAKAVFLAMPVRNSVSWNAMVSG--FACSRDMSAAEE--WF-----RNAPEKGDAVLWT 178
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VV 318
A++ Y G + A F++MP R++ ++ ++++G + + A+ LF M E V
Sbjct: 179 AMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQ 238
Query: 319 PNESM--------SEIYGIEPGVQ-HYGC--------------LVDLLGRAGMLEAAKKV 355
PN S S + + G Q H C LV + + G L +A K+
Sbjct: 239 PNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKL 298
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
EM D A+++ HGD GKE + +L ER D EGV
Sbjct: 299 FGEMHTR-DVVAWNAMISGYAQHGD---GKEAI-NLFERMKD-EGV 338
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 245/499 (49%), Gaps = 57/499 (11%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
I H+ G D F +I S G L +F ++ R WN++I + +
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINM--YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
N+P A +K M P+ T + + S + VIR W
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW------- 354
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
+++DV+ +L+N YAK G ++ A +FD++P K+ +
Sbjct: 355 -----------------------LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
SW+ ++ GY Q L EA++ +N M+ C PN V + A + +GAL QG IHA
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
+ +N + LD+ + T +ID+Y KCG +E A S+F +P + ++I+ L H + A
Sbjct: 452 LIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEA 511
Query: 306 IELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVD 341
++LF M E V + + M + YGI+P ++HYGC+VD
Sbjct: 512 LQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVD 571
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
LLGRAG LE A ++VR MPI+PD + GALL+AC+++G+ +LG + L+E ++ G
Sbjct: 572 LLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGY 631
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
+VLLSNIYA+TE+W GV KVR D +RK PG S + V F +G +T+ EI
Sbjct: 632 YVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEI 691
Query: 462 VLLLFGIDKHLKSLCFFDD 480
L + +KSL + D
Sbjct: 692 YKELKVLSAKMKSLGYVPD 710
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 171/381 (44%), Gaps = 61/381 (16%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
D F ++ S + D++H ++FV + + WN MI GF + A + +
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAH--KVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNR 212
Query: 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138
M + T + IL CA + + G++ H V++ G +S FV N L+++Y+
Sbjct: 213 MKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGR 272
Query: 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198
+ A+ +FD RD++SW S+I Y ++ S
Sbjct: 273 LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPST-------------------------- 306
Query: 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIIL 257
AL F MQL G RP+ +V + + L R I +V R ++ D+++
Sbjct: 307 -----ALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVI 361
Query: 258 GTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELF-MRMQLEG 316
G A+++MYAK G + A +VFD +P +D ++ +L++G + ++ AI+ + M +
Sbjct: 362 GNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRD 421
Query: 317 VVPNE--------SMSEIYGIEPGVQHYG---------------CLVDLLGRAGMLEAAK 353
+PN+ + S + ++ G++ + CL+DL G+ G LE A
Sbjct: 422 TIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAM 481
Query: 354 KVVREMPIE---PDNYVLGAL 371
+ E+P + P N ++ +L
Sbjct: 482 SLFYEIPRDTSVPWNAIIASL 502
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 135/293 (46%), Gaps = 46/293 (15%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQM--------LRSDFLPN 87
GD+S F + + F WN++I + + +A Q+ LR DF
Sbjct: 68 GDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDF--- 124
Query: 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147
YTF IL+AC L G H V ++G+E FV L+HL
Sbjct: 125 -YTFPPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLVHL--------------- 165
Query: 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH 207
Y++ G + +A ++F MP K+ SW+AMI+G+ Q AL
Sbjct: 166 ----------------YSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209
Query: 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267
N M+ G + + + L CA + G IH +V ++G++ D+ + A+I+MY+K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
G ++ A VFD M RD+ ++ S+I+ ++ ++A+ F MQL G+ P+
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 108/194 (55%), Gaps = 11/194 (5%)
Query: 132 LYATCNCMDPARKLFDMSV----NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVS 187
L+ +C ++ +KL + + +++++ T LIN Y G IS++R FD + +KN S
Sbjct: 28 LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFS 87
Query: 188 WSAMINGYVQVDLFKEALEHFNYM-QLCG---FRPNHAGIVGALTACAFLGALDQGRWIH 243
W+++I+ YV+ + EA+ N + +CG RP+ L AC +L G+ +H
Sbjct: 88 WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVH 144
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
V + G E D+ + +++ +Y++ G ++ A VF MP +DV ++ ++ISG + +A
Sbjct: 145 CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAA 204
Query: 304 SAIELFMRMQLEGV 317
A+ + RM+ EGV
Sbjct: 205 GALGVLNRMKGEGV 218
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 243/465 (52%), Gaps = 54/465 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G++ +F L RT W ++I G+A+ +PI+A ++ +M +++ P+ +L
Sbjct: 222 GEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVL 281
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
RA D L G H VI++G E C FD+ +I
Sbjct: 282 RAYTDVEDLEHGKSIHGCVIKMGLE---------------CE--------FDL-----LI 313
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
S TSL YAK G + +AR F+++ + + W+AMI+GYV+ +EA+E F M+
Sbjct: 314 SLTSL---YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKN 370
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
RP+ + ++ ACA +G+L+ RW+ Y+ + D+I+ T++ID YAKCG ++ A
Sbjct: 371 IRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMAR 430
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VFD +P++DV +++++ G H Q +I LF M+ GV PN+
Sbjct: 431 FVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSG 490
Query: 322 ---------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL 372
YGIEP QHY C+VDLLGRAG L+ A V MPIEP V GALL
Sbjct: 491 LVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALL 550
Query: 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432
+AC++H V LG+ E L + G +V LSN+YAS+ W+ V KVR M + + K
Sbjct: 551 SACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTK 610
Query: 433 VPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
G S+IE++G + F +G++T+ +EI + +++ LK F
Sbjct: 611 HLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGF 655
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 189/412 (45%), Gaps = 66/412 (16%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
+ QI + L V+G + F + K++ AS+IG++S +LF F+WN ++R
Sbjct: 90 HLNQIYAKLLVTGLQYGGFLIAKLVN--KASNIGEVSCARKLFDKFPDPDVFLWNAIVRC 147
Query: 63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
++ A +Y +M + P+ ++F +L+AC+ L +G H Q+ R G+ES
Sbjct: 148 YSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESD 207
Query: 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
FV NGL+ LYA C + A +F V+R ++SWTS+I+GYA++GQ A ++F +M +
Sbjct: 208 VFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRK 267
Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
N RP+ +V L A + L+ G+ I
Sbjct: 268 TNV-------------------------------RPDWIALVSVLRAYTDVEDLEHGKSI 296
Query: 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
H V + G+E + L ++ +YAKCG + A F+ + N + + ++ISG + +
Sbjct: 297 HGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYA 356
Query: 303 ASAIELFMRMQLEGVVPNE--------------------------SMSEIYGIEPGVQHY 336
AIELF M+ + + P+ SMSE V
Sbjct: 357 EEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRN---DVIVN 413
Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETV 388
L+D + G ++ A+ V +P + D V A++ +HG G+E++
Sbjct: 414 TSLIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMMVGYGLHGQ---GRESI 461
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 243/499 (48%), Gaps = 66/499 (13%)
Query: 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEK 66
++S L VS L D +A + G L ++F + R WN++I+ +
Sbjct: 278 LESELFVSNKLIDLYA-----------EFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 67 NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVL 126
+P++A +L+++M S P+ T + + + +R GW
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW------- 379
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
L D+++ V+ YAK G + AR +F+ +P + +
Sbjct: 380 -----------------FLEDITIGNAVVVM------YAKLGLVDSARAVFNWLPNTDVI 416
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAY 245
SW+ +I+GY Q EA+E +N M+ G N V L AC+ GAL QG +H
Sbjct: 417 SWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGR 476
Query: 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
+ +NG+ LD+ + T++ DMY KCG +E A S+F +P + + +LI+ H A
Sbjct: 477 LLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKA 536
Query: 306 IELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVD 341
+ LF M EGV P+ E M YGI P ++HYGC+VD
Sbjct: 537 VMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVD 596
Query: 342 LLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
+ GRAG LE A K ++ M ++PD + GALL+ACRVHG+VDLGK E L E +H G
Sbjct: 597 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGY 656
Query: 402 HVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
HVLLSN+YAS +W GV+++R +RK PG S +EVD V F +G +T+ + EE+
Sbjct: 657 HVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEM 716
Query: 462 VLLLFGIDKHLKSLCFFDD 480
L + LK + + D
Sbjct: 717 YRELTALQAKLKMIGYVPD 735
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 152/325 (46%), Gaps = 49/325 (15%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
++ K + + L VS + + K++ +C +G+++ F +Q R + WN M
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCY---LGNVALARHTFDHIQNRDVYAWNLM 123
Query: 60 IRGFAE---KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
I G+ +E I+ F+L+ ML S P+ TF +L+AC + G H ++
Sbjct: 124 ISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALK 178
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
G+ +V L+HLY+ Y G AR +
Sbjct: 179 FGFMWDVYVAASLIHLYSR----------------------------YKAVGN---ARIL 207
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP-NHAGIVGALTACAFLGA 235
FD+MP ++ SW+AMI+GY Q KEAL N G R + +V L+AC G
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEALTLSN-----GLRAMDSVTVVSLLSACTEAGD 262
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
++G IH+Y ++G+E ++ + +ID+YA+ G + VFD M RD+ ++ S+I
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKA 322
Query: 296 LANHDQSASAIELFMRMQLEGVVPN 320
++Q AI LF M+L + P+
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPD 347
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 231/471 (49%), Gaps = 65/471 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GD RLF + R WNTM+ G ++ +A A++ M P + S+
Sbjct: 143 GDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM------PVRNSVSW-- 194
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DV 154
N ++ +A M A + F + + D
Sbjct: 195 -------------------------------NAMVSGFACSRDMSAAEEWFRNAPEKGDA 223
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM-QL 213
+ WT++++GY G + A + F+ MP +N VSW+A++ GYV+ +AL F M +
Sbjct: 224 VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVRE 283
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
+PN + + L C+ L AL G+ IH + + + ++ +GT+++ MY KCG + +
Sbjct: 284 ANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSS 343
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------- 320
AC +F M RDV A+ ++ISG A H AI LF RM+ EGV PN
Sbjct: 344 ACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIH 403
Query: 321 -----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369
E M E+YGIEP V HY C+VDLL RAG LE A ++R MP EP G
Sbjct: 404 TGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYG 463
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429
LL ACRV+ +++ + L+E+ G +V L+NIYA QW+ V +VRR M+DN
Sbjct: 464 TLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNA 523
Query: 430 VRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDD 480
V K PG S IE+ GV+ EF S +R + + I L + + +K++ + D
Sbjct: 524 VVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPD 574
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFS 92
DIG++ F + R WN ++ G+ + + A L++ M+R ++ PN T S
Sbjct: 235 DIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS 294
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
+L C++ S L G H ++L V L+ +Y C + A KLF R
Sbjct: 295 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 354
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
DV++W ++I+GYA+ G KEA+ F M+
Sbjct: 355 DVVAWNAMISGYAQHGD-------------------------------GKEAINLFERMK 383
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271
G PN V LTAC G D G R + GIE + + ++D+ + G +
Sbjct: 384 DEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKL 443
Query: 272 ETACSVFDSMP 282
E A + SMP
Sbjct: 444 ERAVDLIRSMP 454
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 41/286 (14%)
Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
AR LFD D +S+ +L++ + SG AR++F MP ++ VSW+ M++G +
Sbjct: 117 ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 176
Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNGIEL-DIILGT 259
+EA F M + +A + G AC+ + A ++ W RN E D +L T
Sbjct: 177 EEAKAVFLAMPVRNSVSWNAMVSG--FACSRDMSAAEE--WF-----RNAPEKGDAVLWT 227
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG-VV 318
A++ Y G + A F++MP R++ ++ ++++G + + A+ LF M E V
Sbjct: 228 AMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQ 287
Query: 319 PNESM--------SEIYGIEPGVQ-HYGC--------------LVDLLGRAGMLEAAKKV 355
PN S S + + G Q H C LV + + G L +A K+
Sbjct: 288 PNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKL 347
Query: 356 VREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401
EM D A+++ HGD GKE + +L ER D EGV
Sbjct: 348 FGEMHTR-DVVAWNAMISGYAQHGD---GKEAI-NLFERMKD-EGV 387
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 11/161 (6%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ-VDLFKEALEHFNYMQLCGF 216
T + + G ++ A + F P K +++ ++ GY + + +A F+ +
Sbjct: 70 TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT--- 126
Query: 217 RPNHAGIVGALTACAFL-GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ A L +C F G D R + A + D++ ++ +K G +E A
Sbjct: 127 -PD-AVSYNTLLSCHFASGDADGARRLFASMPVR----DVVSWNTMVSGLSKSGAVEEAK 180
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
+VF +MP R+ ++ +++SG A ++A E F +G
Sbjct: 181 AVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG 221
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/552 (28%), Positives = 268/552 (48%), Gaps = 77/552 (13%)
Query: 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMI 60
++++ + + G +P A +++ + + L R+F ++ + F+ NTM+
Sbjct: 367 HVRELHAQVLKQGLHLNPRAAARLVSAYALLRL--LPSSRRVFDAIRDPHADAFLANTML 424
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
R +A P A A + M R D ++T+SF+++A + V + H+ V++LG
Sbjct: 425 RAYALGGAPRDALAAFSAMPRRD----SFTYSFLIKALSAAGVAPVRAV-HSHVVKLGSV 479
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
FV N L+ Y+ ARK+FD RDV+SW + + + G+++ AR++FD+M
Sbjct: 480 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEM 539
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ----------LCGF-------------- 216
PEK+ VSW+ +++GY + + A E F M + G+
Sbjct: 540 PEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFD 599
Query: 217 -RPNH------------------AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257
P A +V L ACA G+L G+ IH YV + + +
Sbjct: 600 KMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHV 659
Query: 258 GTAIIDMYAKCGCIETACSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
A+IDM+ KCGC+ A VFD+ +D ++ S+I G A H A+ELF +M+ +G
Sbjct: 660 CNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQG 719
Query: 317 VVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352
P+ +M YGI P ++HYGC++DLLGR G+++ A
Sbjct: 720 FNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEA 779
Query: 353 KKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412
+++ MP EP+ + G+LL+ACR+H +V+ + V L + + G + +LSNIYA
Sbjct: 780 VDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEA 839
Query: 413 EQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHL 472
QW+ + K R M+ +K G S +E++ EF G+R + ++I ++ + H+
Sbjct: 840 GQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHV 899
Query: 473 KSLCFFDDGNEV 484
K + G+E+
Sbjct: 900 KHVGCVPAGHEL 911
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/503 (31%), Positives = 252/503 (50%), Gaps = 47/503 (9%)
Query: 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78
+P V + C + G ++ RLF + R WN MI + + +A +L+ +
Sbjct: 230 NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFME 289
Query: 79 MLRSDFLP-----NNYTF------------SFILRACADTSCLFVGLICH-----AQVIR 116
M + + N Y R A + + G + + A+ I
Sbjct: 290 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIF 349
Query: 117 LGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQ 175
D V N ++ Y+ C MD A LF V +D++SW +++ YA+ GQ+ A +
Sbjct: 350 NQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIK 409
Query: 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
+F++M EKN VSW+++I+G Q + +AL+ F M G +P+ + L++CA L A
Sbjct: 410 IFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAA 469
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L G+ +H V ++G D+ + A+I MYAKCG I +A +F + + DV ++ SLI+
Sbjct: 470 LQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAA 529
Query: 296 LANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEP 331
A + A++LF +M++EGV P+E M + Y IEP
Sbjct: 530 YALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 589
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
+HY C+VDLLGRAG LE A ++VR M I + + GALL ACR+HG+++L K E L
Sbjct: 590 LAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKL 649
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
+E +VLLSN+ A +W+ V +VRR M++ K PG S IE+ V F+S
Sbjct: 650 LEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSE 709
Query: 452 ERTNVLMEEIVLLLFGIDKHLKS 474
+ + E+ +L + H+++
Sbjct: 710 DPAHPRAVELCHILRSLTAHMRN 732
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 158/366 (43%), Gaps = 53/366 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S +LF + R WN+MI + + +A L+ +M D Y+++ ++
Sbjct: 60 GRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDL----YSWTLMI 115
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C + ++ W N ++ YA D AR+LFD +D++
Sbjct: 116 -TCYTRNGELAKARNLFNLLPYKWNP--VCCNAMVAGYAKNRQFDEARRLFDAMPAKDLV 172
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SW S++ GY ++G++ + Q F++M E++ VSW+ M++G+V+V + E F +
Sbjct: 173 SWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP--- 229
Query: 216 FRPNHAGIVGALTACAFLGALDQGR-------------W---IHAYVDRNGI-------- 251
PN V L A G + + R W I AYV +
Sbjct: 230 -NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFM 288
Query: 252 ---ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308
E + I T +I+ Y + G ++ A + + MP R+V A T++ISG + + A ++
Sbjct: 289 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQI 348
Query: 309 FMRMQLEGVVPNESMSEIYG---------------IEPGVQHYGCLVDLLGRAGMLEAAK 353
F ++ + VV +M Y ++ + + +V + G ++AA
Sbjct: 349 FNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAI 408
Query: 354 KVVREM 359
K+ EM
Sbjct: 409 KIFEEM 414
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 168/382 (43%), Gaps = 40/382 (10%)
Query: 18 WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYK 77
W+P ++ + + D RLF + + WN+M+ G+ E ++
Sbjct: 138 WNPVCCNAMVAGYAKNRQFD--EARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFE 195
Query: 78 QMLRSDFLPNNYTFS-FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136
+M D + N F+ ++S F I + + S+ +L G +A
Sbjct: 196 EMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTV-----SWVTMLCG----FARF 246
Query: 137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV 196
+ AR+LFD R+V++W ++I Y ++ + A +F +MPEKN++SW+ +INGYV
Sbjct: 247 GKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYV 306
Query: 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DI 255
++ EA + N M A I G + +D R I N I + D+
Sbjct: 307 RMGKLDEARQLLNQMPYRNVAAQTAMISGYVQN----KRMDDARQIF-----NQISIRDV 357
Query: 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315
+ +I Y++CG ++ A +F M +D+ ++ ++++ A Q +AI++F M+ +
Sbjct: 358 VCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEK 417
Query: 316 GVVPNESMSEIYGIEPGVQHYGCLVD--LLGRAGMLEAAKKVVREMPIEPDNYVLGALLN 373
+V S+ I G+ + L L+G G +PD L+
Sbjct: 418 NIVSWNSL--ISGLTQNGSYLDALKSFMLMGHEGQ-------------KPDQSTFACGLS 462
Query: 374 ACRVHGDVDLGKETVESLVERS 395
+C + +GK+ + LV +S
Sbjct: 463 SCAHLAALQVGKQ-LHQLVMKS 483
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 29/289 (10%)
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
SY F N + +D A K+F +++ ++ S+I+ +AK+G+IS ARQ+FD M
Sbjct: 13 SYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGM 72
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL--GALDQ 238
P++N VSW++MI Y+ D +EA + F+ M P L + G L +
Sbjct: 73 PQRNIVSWNSMIAAYLHNDRVEEARQLFDKM------PTRDLYSWTLMITCYTRNGELAK 126
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
R + + + + + A++ YAK + A +FD+MP +D+ ++ S+++G
Sbjct: 127 ARNLFNLLP---YKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTR 183
Query: 299 HDQSASAIELFMRMQLEGVVP--------------NESMSEIYGI-EPGVQHYGCLVDLL 343
+ + ++ F M VV N S I P + ++
Sbjct: 184 NGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGF 243
Query: 344 GRAGMLEAAKKVVREMPIE---PDNYVLGALLNACRVHGDVDLGKETVE 389
R G + A+++ +MPI N ++ A + C V + L E E
Sbjct: 244 ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE 292
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 47/277 (16%)
Query: 127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAV 186
N ++ +A + AR+LFD R+++SW S+I Y + ++ ARQ+FDKMP ++
Sbjct: 50 NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY 109
Query: 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN----HAGIVGALTACAF---------L 233
SW+ MI Y + +A FN L ++ N +A + G F +
Sbjct: 110 SWTLMITCYTRNGELAKARNLFN---LLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM 166
Query: 234 GALDQGRW---IHAYVDRNG------------IELDIILGTAIIDMYAKCGCIETACSVF 278
A D W + Y RNG E D++ ++D + + G + ++ F
Sbjct: 167 PAKDLVSWNSMLTGYT-RNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 225
Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY----------- 327
+ +PN + ++ +++ G A + A A LF +M + VV +M Y
Sbjct: 226 EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAIS 285
Query: 328 ----GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
E + +++ R G L+ A++++ +MP
Sbjct: 286 LFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMP 322
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/455 (32%), Positives = 233/455 (51%), Gaps = 36/455 (7%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +F + + W M++ + E +E +AF L+ QM + + Y+++ ++
Sbjct: 189 GFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNL----YSWNIMI 244
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
C + + L + + + S+ ++ GL A M+ ARK FD +D+
Sbjct: 245 SGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGL----ARNGMMELARKYFDHMPTKDIA 300
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+W ++I Y G ++ A +F+ MPEKN VSW+A+I+GY + +L + M
Sbjct: 301 AWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSN 360
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
F+PN I LTAC + L Q H V G E D +L ++ Y++CG + +A
Sbjct: 361 FKPNETTITSVLTACDSILELMQA---HGLVIHLGFEQDKVLANGLVTTYSRCGDVLSAR 417
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
+FD + +D+ ++T++I +NH A+++F RM G P+
Sbjct: 418 FIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAG 477
Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPI-EPDNYVLGA 370
+SMS YG+EP +HY CLVD+LGRAG + A KVV EMP E D VLGA
Sbjct: 478 LVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGA 537
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACR+H DV L E L+E+ G +VLL+N YA+ +WN +VR+ M++ V
Sbjct: 538 LLGACRLHKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNV 597
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLL 465
+K PG S IEV G F +R++ +EEI L L
Sbjct: 598 KKEPGFSQIEVKGKSHVFFVRDRSHPQLEEIYLFL 632
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 133/284 (46%), Gaps = 18/284 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F + R + +MI + + + +A L++++ + + ++ S +
Sbjct: 65 GKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYV 124
Query: 96 RACADTSCLFVGLICHA-QVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
RA G + A QV E F L+ Y +D A +LF+ ++V
Sbjct: 125 RA---------GRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNV 175
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
+SWT+ + GYA++G I AR +F++MPEKN ++W+AM+ YV+ D EA E F M
Sbjct: 176 VSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQR 235
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
+ I G + A A+ + ++ RN + T ++ A+ G +E A
Sbjct: 236 NLYSWNIMISGCINANRLNEAI---QLFNSMPQRNEVSW-----TTLVTGLARNGMMELA 287
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318
FD MP +D+ A+ ++I+ + A A LF M + +V
Sbjct: 288 RKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIV 331
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 35/250 (14%)
Query: 34 DIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93
D G ++ LF + + WN +I G+A + MLRS+F PN T +
Sbjct: 311 DQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITS 370
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+L AC + + H VI LG+E + NGL+ Y+ C + AR +FD +D
Sbjct: 371 VLTAC---DSILELMQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKD 427
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
++SWT++I Y+ G AL+ F M
Sbjct: 428 IVSWTAMILAYSNHG-------------------------------CGPHALQVFARMLR 456
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD-RNGIELDIILGTAIIDMYAKCGCIE 272
G +P+ VG L+AC+ G + +G+ + + G+E + ++D+ + G +
Sbjct: 457 SGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMN 516
Query: 273 TACSVFDSMP 282
A V MP
Sbjct: 517 KAMKVVSEMP 526
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 46/237 (19%)
Query: 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227
G++ AR++FD+MP ++AVS+++MI Y++ +A F + + A I G +
Sbjct: 65 GKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYV 124
Query: 228 TACAFLGALDQGRWI-HAYVDRNGI--------------------------ELDIILGTA 260
A G LD+ R + V+RN E +++ T
Sbjct: 125 RA----GRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTT 180
Query: 261 IIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ------- 313
+ YA+ G I+ A +F+ MP +++ A+T+++ +D+ A ELF +M
Sbjct: 181 AVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSW 240
Query: 314 ---LEGVVPNESMSE---IYGIEPGVQH--YGCLVDLLGRAGMLEAAKKVVREMPIE 362
+ G + ++E ++ P + LV L R GM+E A+K MP +
Sbjct: 241 NIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTK 297
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/373 (35%), Positives = 212/373 (56%), Gaps = 25/373 (6%)
Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
+ N ++ + M AR+LFD ++ VI+WT++I+GY S I AR++FD MPE+N
Sbjct: 178 IYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERN 237
Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQ-LCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
VSW+ MI GY Q +EA+ F MQ P+ I+ L A + GAL G W H
Sbjct: 238 LVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCH 297
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
+V R ++ + + TAI+DMY+KCG IE A +FD MP + V ++ ++I G A + +
Sbjct: 298 CFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAH 357
Query: 304 SAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYGCLV 340
+A++LF+ M E P+E M +G+ ++HYGC+V
Sbjct: 358 AALDLFLTMAKEEK-PDEITMLAVISACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGCMV 416
Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
DLLGRAG L+ A+ ++ MP +P+ +L + L+AC + D++ + ++ VE ++G
Sbjct: 417 DLLGRAGNLKQAEHLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDG 476
Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
+VLL N+YA+ ++W+ V+ M NE +K GCSLIE++ +V EF+SG+ T+ +
Sbjct: 477 NYVLLRNLYAADKRWDDFGMVKNMMRKNEAKKEVGCSLIEINYIVSEFISGDTTHPHRQS 536
Query: 461 IVLLLFGIDKHLK 473
I L+L + H+K
Sbjct: 537 IHLVLEKLLVHMK 549
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 36/258 (13%)
Query: 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85
I G+C+++DI +LF + R WNTMI G+ + +P +A L+++M + L
Sbjct: 214 IHGYCNSNDIDS---ARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSL 270
Query: 86 -PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARK 144
P++ T +L A +DT L +G CH V R + V +L +Y+ C ++ A++
Sbjct: 271 DPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKR 330
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
+FD + V SW ++I+GYA +G A +F M ++
Sbjct: 331 IFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEE-------------------- 370
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264
+P+ ++ ++AC G +++GR + + G+ I ++D+
Sbjct: 371 ------------KPDEITMLAVISACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGCMVDL 418
Query: 265 YAKCGCIETACSVFDSMP 282
+ G ++ A + +MP
Sbjct: 419 LGRAGNLKQAEHLITNMP 436
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 245/490 (50%), Gaps = 51/490 (10%)
Query: 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA-EKNEPIKAFALYKQM 79
F + KII C S GD+ R+F ++ + T WN+++ G + + + ++A L+ ++
Sbjct: 62 FPLNKIIARCVRS--GDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI 119
Query: 80 LRSDFLPNNYTFSFILRA-----------------CADTSCLFVGLICHAQVIRLG---- 118
D N S +R A + + G ++ +
Sbjct: 120 PEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFY 179
Query: 119 --WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
E + N ++ Y C ++ A F ++ R V++WT++I GY K+ ++ +A M
Sbjct: 180 SMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAM 239
Query: 177 FDKMP-EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
F M KN V+W+AMI+GYV+ ++ L+ F M G RPN +G+ AL C+ L A
Sbjct: 240 FKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSA 299
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L GR IH V ++ + D+ T++I MY KCG + A +F+ M +DV A+ ++ISG
Sbjct: 300 LQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 359
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
A H + A+ LF M + P+ ESM Y +EP
Sbjct: 360 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 419
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
HY C+VDLLGRAG LE A K++R MP P V G LL ACRVH +V+L + E L
Sbjct: 420 QPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKL 479
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ + + +V L+NIYAS +W V +VR+ M+++ V KVPG S IE+ V F S
Sbjct: 480 LQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSS 539
Query: 452 ERTNVLMEEI 461
+R + ++ I
Sbjct: 540 DRIHPELDSI 549
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 2 KQIKQIQSHLTVSGTLWDPFAVGKIIG-FCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+QI QI S T+ D A+ +I +C ++GD ++LF ++ + WN MI
Sbjct: 304 RQIHQIVSKSTLCN---DVTALTSLISMYCKCGELGD---AWKLFEVMKKKDVVAWNAMI 357
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR 116
G+A+ KA L+++M+ + P+ TF +L AC + +G+ ++R
Sbjct: 358 SGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVR 413
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/507 (31%), Positives = 249/507 (49%), Gaps = 56/507 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
+KQ + I +H+ S T D + I + G L LF + + W +I
Sbjct: 121 LKQGRAIHAHIQ-SSTFEDDLVLLNFI-LNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLI 178
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
G+++ + +A AL+ +ML F PN +T S +L+A G HA ++ G++
Sbjct: 179 SGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD 238
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
V + LL +YA M A+ +F+ ++V+SW +LI G+A+ G+ ++F +M
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQM 298
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
+ GF P H TACA G+L+QG+
Sbjct: 299 LRQ-------------------------------GFEPTHFTYSSVFTACASSGSLEQGK 327
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
W+HA+V ++G + +G +IDMYAK G I+ A VF + +D+ ++ S+ISG A H
Sbjct: 328 WVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHG 387
Query: 301 QSASAIELFMRMQLEGVVPNE-----------------------SMSEIYGIEPGVQHYG 337
A A++LF +M V PNE + + + IE V H+
Sbjct: 388 LGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHV 447
Query: 338 CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397
+VDLLGRAG L A K + EMPI+P V GALL +CR+H ++DLG E + E
Sbjct: 448 TVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPH 507
Query: 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVL 457
G HVLLSNIYAS + + KVR+ M+++ V+K P CS +E++ V FV+ + ++ +
Sbjct: 508 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPM 567
Query: 458 MEEIVLLLFGIDKHLKSLCFFDDGNEV 484
EEI + I +K + + D + V
Sbjct: 568 REEIQRMWEKISGKIKEIGYVPDTSHV 594
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 51/302 (16%)
Query: 135 TCNCMDPARKLFDMSVNR------------------------DVISWTSLINGYAKSGQI 170
C ++P R L+ +N+ D++ ++N YAK G +
Sbjct: 97 NCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSL 156
Query: 171 SIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230
A+ +FDKMP K+ VSW+ +I+GY Q EAL F M GF+PN + L A
Sbjct: 157 EEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKAS 216
Query: 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYT 290
+ GR +HA+ + G ++++ +G++++DMYA+ + A +F+S+ ++V ++
Sbjct: 217 GTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWN 276
Query: 291 SLISGLANHDQSASAIELFMRMQLEGVVPNE-SMSEIY---------------------- 327
+LI+G A + + LF++M +G P + S ++
Sbjct: 277 ALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKS 336
Query: 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387
G +P L+D+ ++G ++ AKKV R + ++ D ++++ HG LG E
Sbjct: 337 GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHG---LGAEA 392
Query: 388 VE 389
++
Sbjct: 393 LQ 394
>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Brachypodium distachyon]
Length = 622
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 253/513 (49%), Gaps = 58/513 (11%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS-ASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
+ ++++ + G P ++ C+ S G + + +F L F +NT+
Sbjct: 55 LDEVRKAHARHVKLGLDRSPRHARPLLAACALGSWPGGMEYAAAIFAALDEPEAFDYNTL 114
Query: 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
+RG ++P A LY ML P+ YTF F+L+ACA + G H V +LG+
Sbjct: 115 MRGHVAHDDPAAALRLYAAMLEQGVEPDRYTFPFVLKACARLAASGQGRQLHGHVAKLGF 174
Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
+D + SLI+ Y + G+ +AR+ F++
Sbjct: 175 SQHDEHVG------------------------------NSLISFYGRCGEPELARRAFEQ 204
Query: 180 MPEKNAVSWSAMING---YVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236
M + + + ++ Y + L+ + L+ F M G RP + +V AL+ACA LGA
Sbjct: 205 MEAEESTTAASWSALLAAYTRAGLWADCLDSFGAMARAGGRPEESSMVSALSACAHLGAY 264
Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
D GR IH + RN + L+ + T+++DMYAKCGCI+ A +VFD+M ++ + Y++++SGL
Sbjct: 265 DVGRSIHCALLRNTVALNTFMETSLVDMYAKCGCIDKASAVFDAMDGKNEWTYSAMVSGL 324
Query: 297 ANHDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPG 332
A H A+++F M EG P+E+ M + + P
Sbjct: 325 ALHGDGLKALQVFDAMAREGHKPDEAVYVGILNACSRSGLLEEGLRCFDRMRLEHKVAPN 384
Query: 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLV 392
QHYGC+VDL+ RAG L+ A+ ++ MP P + +LLNACR+HG+V+L + ++ L
Sbjct: 385 AQHYGCMVDLMARAGRLDDARALIGSMPTGPTDAAWRSLLNACRIHGNVELAERALQGLS 444
Query: 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
+ G +V+L++++A T+ W+ +R + + + PG S +EV G F S +
Sbjct: 445 GIGAVNAGDYVILADMHARTKNWDAAAALRTEAANRGLAQAPGFSAVEVHGRAHRFASQD 504
Query: 453 RTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVA 485
R++ EI +L ++ L+ + D +EVA
Sbjct: 505 RSHPRTAEIYEMLHQMEWQLRFEGYEPDTSEVA 537
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 251/495 (50%), Gaps = 68/495 (13%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTT---FIWN 57
MK + + + L + +P ++ I C+ S + Y V L++ F +N
Sbjct: 9 MKSVYNLHATLIKNAQHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDPFPYN 68
Query: 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA-DTSCLFVGLICHAQVIR 116
+IR A + P A AL+ M R++ +++TF IL++ + C+ H V++
Sbjct: 69 AVIRHVA-LHAPSLALALFSHMHRTNVPFDHFTFPLILKSSKLNPHCI------HTLVLK 121
Query: 117 LGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176
LG+ S +V N +LIN Y SG + + ++
Sbjct: 122 LGFHSNIYVQN-------------------------------ALINSYGTSGSLHASLKL 150
Query: 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL--CGFRPNHAGIVGALTACAFLG 234
FD+MP ++ +SWS++I+ + + L EAL F MQL P+ ++ ++A + LG
Sbjct: 151 FDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAVSSLG 210
Query: 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLIS 294
AL+ G W+HA++ R G+ L + LG+A+IDMY++CG I+ + VFD MP+R+V +T+LI+
Sbjct: 211 ALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALIN 270
Query: 295 GLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIE 330
GLA H + A+E F M G+ P+ SM YGIE
Sbjct: 271 GLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIE 330
Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390
P ++HYGC+VDLLGRAGM+ A V M + P++ + LL AC H + L ++ E
Sbjct: 331 PALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKER 390
Query: 391 LVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVS 450
+ E H+G +VLLSN Y W E VR M ++++ K PG SL+ +D V EFVS
Sbjct: 391 IKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVHIDQVAHEFVS 450
Query: 451 GERTNVLMEEIVLLL 465
G+ ++ EEI L
Sbjct: 451 GDNSHPQWEEITRFL 465
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 236/474 (49%), Gaps = 56/474 (11%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
GDL + +LF + R W +I G+++ + P A L +MLR PN +T + +L
Sbjct: 64 GDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLL 123
Query: 96 RACAD--TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+A + ++ + G H +R G++S +V +L +YA C+ ++ A+ +
Sbjct: 124 KAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLI-------- 175
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
FD M KN VSW+A+I GY + +A F+ M
Sbjct: 176 -----------------------FDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLR 212
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
+P H L ACA +G+L+QG+W+HA + + G +L +G ++DMYAK G IE
Sbjct: 213 ENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIED 272
Query: 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------------ 321
A VFD + RDV ++ S+++G + H A++ F M + PN+
Sbjct: 273 AKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSH 332
Query: 322 -----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
M + Y +EP + HY +VDLLGRAG L+ A + + EMPI+P V GA
Sbjct: 333 AGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGA 392
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACR+H +++LG E + E + G HVLL NIYA +WN KVR+ M+++ V
Sbjct: 393 LLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGV 452
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
+K P CS +E++ V FV+ + + EI + I +K + + D + V
Sbjct: 453 KKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHV 506
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 133/274 (48%), Gaps = 29/274 (10%)
Query: 145 LFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204
L + D++ +L+N YAK G + AR++FD+M ++ V+W+A+I GY Q D ++A
Sbjct: 41 LLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDA 100
Query: 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALD--QGRWIHAYVDRNGIELDIILGTAII 262
L M G +PN + L A + +G+ D QGR +H R G + ++ + AI+
Sbjct: 101 LLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAIL 160
Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE- 321
DMYA+C +E A +FD M +++ ++ +LI+G A Q A LF M E V P
Sbjct: 161 DMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHF 220
Query: 322 -------SMSEIYGIEPG--------------VQHYG-CLVDLLGRAGMLEAAKKVVREM 359
+ + + +E G V G L+D+ ++G +E AKKV +
Sbjct: 221 TYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRL 280
Query: 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
+ D ++L HG LGK ++ E
Sbjct: 281 A-KRDVVSWNSMLTGYSQHG---LGKVALQRFEE 310
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
L C L L++G+ IHA + + D+++ ++++YAKCG + A +FD M +RDV
Sbjct: 22 LKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDV 81
Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
+T+LI+G + HD+ A+ L M G+ PN+
Sbjct: 82 VTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQ 116
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/429 (32%), Positives = 220/429 (51%), Gaps = 27/429 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFI 94
G + +F + R W MI G+ + +A Y M+ D N
Sbjct: 224 GAIDMAAEMFERIPERDVVSWLVMIDGYIRADCISEALRTYVAMMAEVDTRGNVALLVDF 283
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
+ACA + + G H +++ G++++ FV L+H Y +C+ +D A+ F +S +
Sbjct: 284 QKACARHAAVLEGQQLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHI 343
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
SW + + G + + ARQ+FD MPEK+ +SWS +++GYVQ AL+ F M
Sbjct: 344 ASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGA 403
Query: 215 GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
G +PNH + L+A A G L+QGRWIH Y+ I L L +IDMYAKCG + A
Sbjct: 404 GVKPNHITLASTLSAVANSGTLEQGRWIHDYIISKSIHLTDNLIAGLIDMYAKCGSVADA 463
Query: 275 CSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
+F+ + + + + ++I LA H + ++ELF ++Q + PN
Sbjct: 464 VLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLNACC 523
Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
ESM YGI P ++HYGC+VDLLGRAG LE A+++++ MP++ D +
Sbjct: 524 HAGMVTEGKHHFESMRREYGIPPTIKHYGCMVDLLGRAGYLEEAERLIKTMPVKSDVVIW 583
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G++L A R HG+V LG++ E L + +H V L NIYA +WN V VR+ +
Sbjct: 584 GSILAAARSHGNVALGEKAAEELAKLDPNHGASKVALCNIYADAGRWNNVSVVRKELRYE 643
Query: 429 EVRKVPGCS 437
+ ++ G S
Sbjct: 644 NLERLSGSS 652
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 153/319 (47%), Gaps = 34/319 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L H R+ + R T + T++ A A A+++ ML D PN T + ++
Sbjct: 92 GHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFRGMLAQDVPPNEVTLAGVI 151
Query: 96 RACA-DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154
A A D + +G++ H ++ G + + V L+H YA + AR +F+ +++
Sbjct: 152 TALARDWAPAPLGMV-HGVSVQRGLDGFVIVATNLVHAYAAAAQVGFARAVFEWMPDKNT 210
Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF-NYMQL 213
++W +++NGY K+G I +A +MF+++PE++ VSW MI+GY++ D EAL + M
Sbjct: 211 VTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMIDGYIRADCISEALRTYVAMMAE 270
Query: 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273
R N A +V ACA A+ +G+ +H + ++G + + + +I Y C ++
Sbjct: 271 VDTRGNVALLVDFQKACARHAAVLEGQQLHTVILKDGFDTHLFVQATLIHFYGSCDLLDL 330
Query: 274 AC-------------------------------SVFDSMPNRDVFAYTSLISGLANHDQS 302
A +FD+MP +D ++++L+SG S
Sbjct: 331 AKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHS 390
Query: 303 ASAIELFMRMQLEGVVPNE 321
A++LF M GV PN
Sbjct: 391 DMALQLFCLMLGAGVKPNH 409
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
Query: 124 FVLNGLLHLYA---TCNCMDPARKLFD--MSVNRDVISWTSLINGYAKSGQISIARQMFD 178
FV N LL Y+ + + A LFD RD + +L+ A+ G + A++M
Sbjct: 43 FVRNSLLAFYSRLPSSHAPALAHHLFDEIPLALRDAAAHNTLLAALARGGHLDHAKRMLA 102
Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
+MP+++ VS++ ++ + ++A+ F M PN + G +TA A A
Sbjct: 103 EMPQRDTVSFTTVLTALARAGHAEDAMAVFRGMLAQDVPPNEVTLAGVITALARDWAPAP 162
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+H + G++ +I+ T ++ YA + A +VF+ MP+++ + ++++G
Sbjct: 163 LGMVHGVSVQRGLDGFVIVATNLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVK 222
Query: 299 HDQSASAIELFMRMQLEGVV 318
A E+F R+ VV
Sbjct: 223 AGAIDMAAEMFERIPERDVV 242
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 247/496 (49%), Gaps = 63/496 (12%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
S +G + +F + + WN +I + + ++ KA + M + ++ T S
Sbjct: 1424 SKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLS 1483
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
IL A A TS + +G H IR ES V N ++ +YA C +D ARK+FD + R
Sbjct: 1484 SILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTER 1543
Query: 153 D-----------------------------------VISWTSLINGYAKSGQISIARQMF 177
D VISW S+I G+ ++GQ++ A+ MF
Sbjct: 1544 DLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMF 1603
Query: 178 DKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233
+M + N ++W+ +I+G Q EA+ F MQ G RP+ A I L AC +
Sbjct: 1604 SQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDI 1663
Query: 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLI 293
+L GR IH ++ R+ L + + T+++DMYAKCG I+ A VF M ++++ Y ++I
Sbjct: 1664 PSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMI 1723
Query: 294 SGLANHDQSASAIELFMRMQLEGVVPNE------------------------SMSEIYGI 329
S A H Q+ A+ LF +Q EG+ P+ M + +
Sbjct: 1724 SAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNM 1783
Query: 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVE 389
P ++HYGC+V LL R G L+ A +++ MP +PD ++LG+LL ACR H +++LG+ +
Sbjct: 1784 NPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSK 1843
Query: 390 SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFV 449
L + + G +V LSN YA+ +W V +R M+ +RK PGCS I+ G + FV
Sbjct: 1844 HLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFV 1903
Query: 450 SGERTNVLMEEIVLLL 465
+G+ ++ EEI +L
Sbjct: 1904 AGDGSHPKTEEIYAML 1919
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 153/320 (47%), Gaps = 45/320 (14%)
Query: 5 KQIQSHLTVSGTLW--DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI-- 60
+QI + + +G + + + K++ F + D +++ RLF L+ R F W ++
Sbjct: 1194 QQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVA--VRLFHRLRVRNVFSWAAIVGL 1251
Query: 61 ---RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
GF+E A + +M + P+N+ +L+AC + +G H V+++
Sbjct: 1252 QCRMGFSED-----ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKM 1306
Query: 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
G+ + FV + L+ +Y C G + AR++F
Sbjct: 1307 GFGACVFVSSSLVDMYGKC-------------------------------GVLEDARKVF 1335
Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237
D M EKN V+W++MI GYVQ L +EA++ F M++ G P + L+A A L AL
Sbjct: 1336 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 1395
Query: 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297
+G+ HA N ++LD ILG++II+ Y+K G IE A VF M +DV + LIS
Sbjct: 1396 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYV 1455
Query: 298 NHDQSASAIELFMRMQLEGV 317
H Q A+ + M+ E +
Sbjct: 1456 QHHQVGKALNMCHLMRSENL 1475
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 130/285 (45%), Gaps = 31/285 (10%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L ++F + + WN+MI G+ + +A ++ M P T + L
Sbjct: 1326 GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFL 1385
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
A A+ L G HA I LN S++ D I
Sbjct: 1386 SASANLDALIEGKQGHAIAI----------LN---------------------SLDLDNI 1414
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+S+IN Y+K G I A +F +M EK+ V+W+ +I+ YVQ +AL + M+
Sbjct: 1415 LGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSEN 1474
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
R + + L+A A + G+ H Y R +E D+++ +IIDMYAKC I+ A
Sbjct: 1475 LRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDAR 1534
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
VFDS RD+ + +L++ A S A++LF +MQ + V PN
Sbjct: 1535 KVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPN 1579
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%)
Query: 158 TSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR 217
T L+ YAK +A ++F ++ +N SW+A++ ++ ++AL F MQ G
Sbjct: 1215 TKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF 1274
Query: 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
P++ + L AC L + G+ +H YV + G + + ++++DMY KCG +E A V
Sbjct: 1275 PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKV 1334
Query: 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
FDSM ++V + S+I G + + AI++F M++EG+ P
Sbjct: 1335 FDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTR 1378
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 227 LTACAFLGALDQGRWIHAYVDRNG--IELDIILGTAIIDMYAKCGCIETACSVFDSMPNR 284
L C + AL G+ IHA + +NG + + T ++ YAKC E A +F + R
Sbjct: 1181 LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR 1240
Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM----------SEIYGIEPGVQ 334
+VF++ +++ S A+ F+ MQ GV P+ + ++ G+ GV
Sbjct: 1241 NVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVH 1300
Query: 335 HY-------------GCLVDLLGRAGMLEAAKKVVREM 359
Y LVD+ G+ G+LE A+KV M
Sbjct: 1301 GYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSM 1338
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/497 (31%), Positives = 252/497 (50%), Gaps = 64/497 (12%)
Query: 20 PFAVGKIIGFCS---ASDIGDLSHGYRLFVCLQYRTTFIW-NTMIRGFAEKNEPIKAFA- 74
P V +++ C+ A L++ ++F + + +W NT++RG+A
Sbjct: 62 PAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEE 121
Query: 75 ---LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131
++ +M+ P+ YTF +L+ACA G H ++ G +++V
Sbjct: 122 AARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVA----- 176
Query: 132 LYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAM 191
+LIN YA+ G + AR MFD+M + VS++AM
Sbjct: 177 --------------------------PTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210
Query: 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251
I V+ L EAL F MQ G +P ++ L+ACA LGAL+ GRWIH Y+ + +
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270
Query: 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMR 311
+ + + TA+IDMYAKCG +E A VF M +RD A++ ++ ANH AI +F
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEE 330
Query: 312 MQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCLVDLLGRAG 347
M+ +G+ P+ +SM E YGI G++HYGC+ DLL R+G
Sbjct: 331 MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSG 389
Query: 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407
LE A K + E+PI+P + LL+AC HGDVD+GK E ++E H G +V+ SN
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449
Query: 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467
+ A+T +W + VR+ M + V KVPGCS IE+D +V EF +G+ ++ +E ++
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDE 509
Query: 468 IDKHLKSLCFFDDGNEV 484
+ + LK + + + + V
Sbjct: 510 VIEQLKLVGYVPNTSHV 526
>gi|147772239|emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera]
Length = 901
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/508 (28%), Positives = 256/508 (50%), Gaps = 51/508 (10%)
Query: 1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
M+Q+ QIQ++L +SG PF K++ ++D D+++ +F + T N +I
Sbjct: 385 MRQLSQIQAYLIISGLFRKPFVASKVLKV--SADYADVNYTILIFRSIDSPDTVCVNAVI 442
Query: 61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
+ ++ + +A Y + LR+ F+ N++TF + C C+ G H Q I+ G +
Sbjct: 443 KAYSISSVAHQALVFYFETLRNGFMCNSFTFPPLFSCCRKXGCVEYGEKFHGQAIKNGVD 502
Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
+ V N ++H+Y C ++ A K+F RD++SW S+I+ YAK G + +A ++FD M
Sbjct: 503 NVLDVQNSMVHMYGCCGVVEXAEKVFGEMSKRDLVSWNSIIDAYAKLGHLVLAHRLFDAM 562
Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
PE+NAVSW+ M+ GY++ AL+ F M G R +V LTAC L +GR
Sbjct: 563 PERNAVSWNIMMGGYLKGGNPGCALKLFREMANAGLRGGETTMVSVLTACCRSARLKEGR 622
Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
IH + R ++ +IL TA+IDMY+KC ++ A V+D M ++ + ++I G H
Sbjct: 623 SIHGVLIRTFLKSSLILDTALIDMYSKCERVDVARVVYDRMTKXNLVCWNAMILGHCIHG 682
Query: 301 QSASAIELF--------------------MRMQLEGVVPNE------------------- 321
+ ++LF R++ +G++P+E
Sbjct: 683 NAEDGLKLFEEMVDGIRSEDGEINLDKGIKRIEGQGLJPDEITFIGVLCACAREGLLAEG 742
Query: 322 -----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY-----VLGAL 371
M + I+P HY C+ +L G+++ A++++R MP E ++ L
Sbjct: 743 RSYYSQMINTFHIKPNFAHYWCMANLFAGVGLVQEAEEILRSMPEEDEDLSWESSFWAGL 802
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L++CR G V LG+ L+E + + LL N+YA +W V +V+ +++ ++
Sbjct: 803 LSSCRFQGXVFLGERIATYLIESEPQNISYYRLLLNVYAVAGRWEDVARVKEMVKERGIK 862
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLME 459
++PGC+L ++ +V EF GE+ ME
Sbjct: 863 QMPGCNLADLKEIVHEFKLGEKWQQGME 890
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 233/462 (50%), Gaps = 29/462 (6%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G L +F + R WNTM+ G+A+ +A +K++ RS N ++F+ +L
Sbjct: 127 GMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLL 186
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
AC + L + H QV+ G+ S + ++ YA C M+ A++ FD +D+
Sbjct: 187 TACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIH 246
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
WT+LI+GYAK G + A ++F +MPEKN VSW+A+I GYV+ AL+ F M
Sbjct: 247 IWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMR 306
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
+P L A A + +L G+ IH Y+ R + + I+ +++IDMY+K G +E +
Sbjct: 307 VKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASE 366
Query: 276 SVFD-SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
VF +D + ++IS LA H A+++ M V PN
Sbjct: 367 RVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHS 426
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
ESM+ +GI P +HY CL+DLLGRAG + + EMP EPD ++ A
Sbjct: 427 GLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNA 486
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
+L CR+HG+ +LGK+ E L++ + ++LLS+IYA +W VEK+R M+ V
Sbjct: 487 ILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRV 546
Query: 431 RKVPGCSLIEVDGVVCEFV----SGERTNVLMEEIVLLLFGI 468
K S IE++ V F S + EEI +L +
Sbjct: 547 NKEKAVSWIEIENKVKAFTVSDGSHAHAHARKEEIYFILHNL 588
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 1/220 (0%)
Query: 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNR 152
+L+ C DT L G H + G++ + +L N L+ +Y C A K+FD R
Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111
Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
++ SW ++++G+ KSG + AR +FD MPE++ VSW+ M+ GY Q EAL F ++
Sbjct: 112 NLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELR 171
Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G + N G LTAC L + H V G +++L +IID YAKCG +E
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312
+A FD M +D+ +T+LISG A +A +LF M
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREM 271
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 122/304 (40%), Gaps = 41/304 (13%)
Query: 33 SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
+ +GD+ +LF + + W +I G+ + A L+++M+ P +TFS
Sbjct: 256 AKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFS 315
Query: 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
L A A + L G H +IR V + L+ +Y+ ++ + ++F + ++
Sbjct: 316 SCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDK 375
Query: 153 -DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211
D + W ++I+ A+ G A QM D M +
Sbjct: 376 QDCVLWNTMISALAQHGLGHKALQMLDDMIK----------------------------- 406
Query: 212 QLCGFR--PNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKC 268
FR PN +V L AC+ G +++G RW + ++GI D +ID+ +
Sbjct: 407 ----FRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRA 462
Query: 269 GCIETACSVFDSMPNRDVFAYTSLISGL----ANHDQSASAIELFMRMQLEGVVPNESMS 324
GC + S + MP + I G+ N + A E +++ E P +S
Sbjct: 463 GCFKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLS 522
Query: 325 EIYG 328
IY
Sbjct: 523 SIYA 526
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 14/188 (7%)
Query: 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGT 259
+A+ + G R + L C +L QG+WIH ++ G + + +L
Sbjct: 27 LSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSN 86
Query: 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319
+I MY KCG AC VFD M R+++++ +++SG A +F M VV
Sbjct: 87 HLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVS 146
Query: 320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG 379
+M Y + + L R+G I+ + + LL AC
Sbjct: 147 WNTMVIGYAQDGNLHEALWFFKELRRSG-------------IKFNEFSFAGLLTACVKSR 193
Query: 380 DVDLGKET 387
+ L ++
Sbjct: 194 QLQLNQQA 201
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 220/402 (54%), Gaps = 55/402 (13%)
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
RA A + G H+ IR G+ES FV N L+H+YA C
Sbjct: 3 RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC------------------- 43
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
G+A+S A ++F+ M E+N V+W+++INGY EAL F M L G
Sbjct: 44 -------GHAES-----AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRG 91
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
P+ +V L+ACA LGAL GR H Y+ + G++ ++ G A++D+YAKCG I A
Sbjct: 92 VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAH 151
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------- 321
VFD M + V ++TSLI GLA + A+ELF ++ +G++P+E
Sbjct: 152 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 211
Query: 322 ----------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
M E YGI P ++HYGC+VDLLGRAG+++ A + ++ MP++P+ V L
Sbjct: 212 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 271
Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
L AC +HG + LG+ L++ H G +VLLSN+YAS ++W+ V KVRR M V+
Sbjct: 272 LGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVK 331
Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
K PG SL+E+ + EFV G+R++ EEI + L I K LK
Sbjct: 332 KTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLK 373
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 129/302 (42%), Gaps = 40/302 (13%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G ++LF + R WN++I G+A P +A L+++M P+ +T +L
Sbjct: 44 GHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLL 103
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA+ L +G H ++++G + N LL LYA C + A K+FD + V+
Sbjct: 104 SACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVV 163
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
SWTSLI G A +NG+ KEALE F ++ G
Sbjct: 164 SWTSLIVGLA--------------------------VNGF-----GKEALELFKELERKG 192
Query: 216 FRPNHAGIVGALTACAFLGALDQG-RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274
P+ VG L AC+ G +D+G + + GI I ++D+ + G ++ A
Sbjct: 193 LMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQA 252
Query: 275 CSVFDSMP-NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-----MSEIYG 328
+MP + + +L+ H A+ R QL + P S +S +Y
Sbjct: 253 HEFIQNMPMQPNAVVWRTLLGACTIHGH--LALGEVARAQLLQLEPKHSGDYVLLSNLYA 310
Query: 329 IE 330
E
Sbjct: 311 SE 312
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 236/451 (52%), Gaps = 33/451 (7%)
Query: 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPI-KAFALYKQMLRSDFLPNNYTFSFILRACADT 101
++F + R WN++I + E+N P+ +A AL+ +M++ F+P+ T + ++ ACA
Sbjct: 203 KVFDAMPERNIVSWNSLITCY-EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGL 261
Query: 102 SCLFVGLICHAQVIRLGWESYDFVLN-GLLHLYATCNCMDPARKLFDMSVNRDVISWTSL 160
+ G H ++++ D VLN L+ +YA C A+ +FD R V+S TS+
Sbjct: 262 AAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSM 321
Query: 161 INGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220
I GYAKS + A+ +F +M EKN V+W+ +I Y +EAL F ++ P H
Sbjct: 322 ITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTH 381
Query: 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGI------ELDIILGTAIIDMYAKCGCIETA 274
L ACA L L G+ H +V + G E D+ +G +++DMY K G I
Sbjct: 382 YTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDG 441
Query: 275 CSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN-------------- 320
VF+ M RD ++ ++I G A + ++ A+ LF RM P+
Sbjct: 442 AKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHS 501
Query: 321 ----------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA 370
+SM+E +GI P HY C++DLLGRAG L+ ++++ MP+EPD + +
Sbjct: 502 GLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWAS 561
Query: 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430
LL ACR+H ++D+G+ L E D+ G +VLLSN+YA +W V +VRR M+ V
Sbjct: 562 LLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGV 621
Query: 431 RKVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
K PGCS IE+ V F++ + + EI
Sbjct: 622 SKQPGCSWIEIGRKVNVFLARDNIHPCRNEI 652
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 154/388 (39%), Gaps = 82/388 (21%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALY------------------ 76
+G L R+F + +R TF +N ++ A A AL+
Sbjct: 63 LGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAAL 122
Query: 77 -------------KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
M DF+ N Y+F+ L ACA G HA V + S
Sbjct: 123 AQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDV 182
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
++ L+ +YA C + A+K+FD R+++SW SLI Y ++G +
Sbjct: 183 YIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVD------------ 230
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
EAL F M GF P+ + ++ACA L A +GR +H
Sbjct: 231 -------------------EALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVH 271
Query: 244 A-YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQS 302
V + D++L A++DMYAKCG A VFD M R V + TS+I+G A
Sbjct: 272 TRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANV 331
Query: 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIE 362
A +F++M +E V + L+ E A ++ + E
Sbjct: 332 GDAQAVFLQM----------------VEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRE 375
Query: 363 ---PDNYVLGALLNACRVHGDVDLGKET 387
P +Y G +LNAC ++ LG++
Sbjct: 376 SVWPTHYTYGNVLNACANLANLQLGQQA 403
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 107/198 (54%)
Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
F+LN LL YA + AR++FD +R+ S+ +L++ A+ G+ A +F +P+
Sbjct: 51 FLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDP 110
Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
+ S++A++ Q +AL M F N AL+ACA A G +H
Sbjct: 111 DQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVH 170
Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
A V ++ D+ +GTA++DMYAKC E A VFD+MP R++ ++ SLI+ +
Sbjct: 171 ALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVD 230
Query: 304 SAIELFMRMQLEGVVPNE 321
A+ LF+RM +G VP+E
Sbjct: 231 EALALFVRMMKDGFVPDE 248
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
+ L ++ YA+ G + A VFD MP+R+ F+Y +L+S A ++ A+ LF
Sbjct: 49 ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALF---- 104
Query: 314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL-- 371
G +P +P Y +V L + G A + + M D++VL A
Sbjct: 105 --GAIP----------DPDQCSYNAVVAALAQHGRGGDALRFLAAM--HADDFVLNAYSF 150
Query: 372 ---LNACRVHGDVDLGKETVESLVERSLDHEGVHV--LLSNIYASTEQWNGVEKVRRGME 426
L+AC G E V +LV +S V++ L ++YA E+ +KV M
Sbjct: 151 ASALSACASEKASRTG-EQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP 209
Query: 427 DNEVRKVPGCSLI-------EVDGVVCEFVSGERTNVLMEEIVL 463
+ + V SLI VD + FV + + +E+ L
Sbjct: 210 ERNI--VSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTL 251
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 35/160 (21%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G +S G ++F + R WN MI G+A+ A L+++ML S+ P++ T +L
Sbjct: 436 GSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVL 495
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVL--NGLLHLYATCNCMDPARKLFDMSVNRD 153
AC H+ +++ G + + +G++ P R
Sbjct: 496 SACG-----------HSGLVKEGRRYFQSMTEDHGII----------PTRD--------- 525
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMP-EKNAVSWSAMI 192
+T +I+ ++G + ++ + MP E +AV W++++
Sbjct: 526 --HYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLL 563
>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Glycine max]
Length = 805
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 156/502 (31%), Positives = 247/502 (49%), Gaps = 65/502 (12%)
Query: 35 IGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94
+G + +F + + WN ++ G+A+ KA + M + T S +
Sbjct: 304 VGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSAL 363
Query: 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM------ 148
L ADT L +G+ HA ++ +E V +G++ +YA C MD AR++F
Sbjct: 364 LAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDI 423
Query: 149 -----------------------------SVNRDVISWTSLINGYAKSGQISIARQMFDK 179
SV +V+SW SLI G+ K+GQ++ AR MF +
Sbjct: 424 VLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAE 483
Query: 180 MPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
M N ++W+ M++G VQ A+ F MQ G RPN I AL+ C +
Sbjct: 484 MCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMAL 543
Query: 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
L GR IH YV R + I + T+I+DMYAKCG ++ A VF ++++ Y ++IS
Sbjct: 544 LKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISA 603
Query: 296 LANHDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEP 331
A+H Q+ A+ LF +M+ EG+VP+ + M ++P
Sbjct: 604 YASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKP 663
Query: 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
+HYGCLV LL G L+ A + + MP PD ++LG+LL AC + D++L + L
Sbjct: 664 SEEHYGCLVKLLANDGQLDEALRTILTMPSHPDAHILGSLLTACGQNNDIELADYIAKWL 723
Query: 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSG 451
++ D+ G +V LSN+YA+ +W+ V +R M++ +RK+PGCS IEV + F++
Sbjct: 724 LKLDPDNSGNYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSWIEVGQELHVFIAS 783
Query: 452 ERTNVLMEEI--VLLLFGIDKH 471
+R++ EEI L L G + H
Sbjct: 784 DRSHPKTEEIYVTLDLLGFEMH 805
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 179/423 (42%), Gaps = 60/423 (14%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + ++F + R WN+M+ +A+ +A ++++M S
Sbjct: 204 GAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFF 263
Query: 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
ACA++ + + G + + + G L L D +
Sbjct: 264 TACANS-----------EAVGEGRQGHGLAVVGGLEL--------------------DNV 292
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
+S++N Y K G I A +F M K+ V+W+ ++ GY Q + ++ALE M+ G
Sbjct: 293 LGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEG 352
Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
R + + L A L G HAY +N E D+++ + IIDMYAKCG ++ A
Sbjct: 353 LRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCAR 412
Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
VF + +D+ + ++++ A S A++LF +MQLE V PN
Sbjct: 413 RVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNG 472
Query: 321 ------ESMSEI--YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLG 369
+E+ G+ P + + ++ L + G A V REM I P++ +
Sbjct: 473 QVAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSIT 532
Query: 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS--NIYASTEQWNGVEKVRRGMED 427
+ L+ C + G+ ++ R L + +H++ S ++YA +G + V +
Sbjct: 533 SALSGCTSMALLKHGRAIHGYVMRRDLS-QSIHIITSIMDMYAKCGSLDGAKCVFKMCST 591
Query: 428 NEV 430
E+
Sbjct: 592 KEL 594
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 136/307 (44%), Gaps = 48/307 (15%)
Query: 19 DPFAVGKII---GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI-----RGFAEKNEPI 70
+ F + K++ C AS+ RLF F W +I GF E+
Sbjct: 87 NDFVISKLVILYAKCGASEPAT-----RLFRDSPSPNVFSWAAIIGLHTRTGFCEE---- 137
Query: 71 KAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130
A Y +M + P+N+ +L+AC + G HA V++
Sbjct: 138 -ALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVK-------------- 182
Query: 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA 190
+ + V TSL++ Y K G + A ++FD+M E+N V+W++
Sbjct: 183 ----------------TIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNS 226
Query: 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250
M+ Y Q + +EA+ F M+L G + G TACA A+ +GR H G
Sbjct: 227 MVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGG 286
Query: 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFM 310
+ELD +LG++I++ Y K G IE A VF +M +DV + +++G A A+E+
Sbjct: 287 LELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCC 346
Query: 311 RMQLEGV 317
M+ EG+
Sbjct: 347 VMREEGL 353
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 57/298 (19%)
Query: 91 FSFILRACADTSCLFVGLICHAQVIRLG--WESYDFVLNGLLHLYATCNCMDPARKLFDM 148
+ +L+ C L + L HA VI+ G + DFV++ L+ LYA C +PA +
Sbjct: 54 YGTLLQGCVYERALPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATR---- 109
Query: 149 SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208
+F P N SW+A+I + + +EAL +
Sbjct: 110 ---------------------------LFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGY 142
Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAK 267
MQ G P++ + L AC L + G+ +HA+V + G++ + + T+++DMY K
Sbjct: 143 IKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGK 202
Query: 268 CGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-VPNESMSEI 326
CG +E A VFD M R+ + S++ A + + AI +F M+L+GV V ++S
Sbjct: 203 CGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGF 262
Query: 327 Y-------GIEPGVQHYGCLV-------DLLG--------RAGMLEAAKKVVREMPIE 362
+ + G Q +G V ++LG + G++E A+ V R M ++
Sbjct: 263 FTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVK 320
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 246/476 (51%), Gaps = 27/476 (5%)
Query: 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
G + +LF L R W +++ N P +A ++ + +L + F P+++ F+ ++
Sbjct: 52 GLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLV 111
Query: 96 RACADTSCLFV--GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD 153
+ACA+ L V G HA+ + D V + L+ +YA D R +FD + +
Sbjct: 112 KACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLN 171
Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
ISWT++I+GYA+SG+ A ++F + P +N +W+A+I+G VQ +A F M+
Sbjct: 172 SISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRH 231
Query: 214 CGFRPNHAGIVGALT-ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
G ++ ++ ACA L + G+ +H V G E + + A+IDMYAKC +
Sbjct: 232 EGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLV 291
Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------- 321
A +F M +DV ++TS+I G A H Q+ A+ L+ M L GV PNE
Sbjct: 292 AAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACS 351
Query: 322 -------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
+M E +GI P +QHY CL+DL R+G L+ A+ ++R MP+ PD
Sbjct: 352 HAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTW 411
Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
ALL++C+ HG+ + + L+ + ++LLSNIYA W V KVR+ M
Sbjct: 412 AALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTL 471
Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
E +K PG S I++ F +GE ++ + +EI+ L+ +D+ ++ + D + V
Sbjct: 472 EAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSV 527
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/418 (22%), Positives = 155/418 (37%), Gaps = 138/418 (33%)
Query: 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ- 169
HAQ+I+ G ++ + N LL+ Y C + A +LFD RD ++W SL+ S +
Sbjct: 26 HAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRP 85
Query: 170 ---ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226
+SI+R + GF P+H
Sbjct: 86 HRALSISRSLLST-----------------------------------GFHPDHFVFASL 110
Query: 227 LTACAFLGAL--DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM--- 281
+ ACA LG L QG+ +HA + D ++ +++IDMYAK G + +VFDS+
Sbjct: 111 VKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSL 170
Query: 282 ----------------------------PNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313
P R++FA+T+LISGL A LF+ M+
Sbjct: 171 NSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMR 230
Query: 314 LEGVVPNES--MSEIYGI-------EPGVQHYG---------------CLVDLLGRAGML 349
EG+ + +S + G E G Q +G L+D+ + L
Sbjct: 231 HEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDL 290
Query: 350 EAAKKVVREM----------------------------------PIEPDNYVLGALLNAC 375
AAK + EM ++P+ L++AC
Sbjct: 291 VAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHAC 350
Query: 376 RVHGDVDLGKETVESLVE-----RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
G V G+ ++VE SL H + L ++++ + + E + R M N
Sbjct: 351 SHAGLVSKGRTLFRTMVEDHGISPSLQH---YTCLLDLFSRSGHLDEAENLIRTMPVN 405
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
+ +HA + + G+ + +++ Y KCG I+ A +FD++P RD A+ SL++
Sbjct: 22 AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81
Query: 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML--EAAKKVV 356
++ A+ + + G P+ + + LV G+L + K+V
Sbjct: 82 SNRPHRALSISRSLLSTGFHPDHFV------------FASLVKACANLGVLHVKQGKQVH 129
Query: 357 REM---PIEPDNYVLGALLNACRVHGDVDLGKETVESL 391
P D+ V +L++ G D G+ +S+
Sbjct: 130 ARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSI 167
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,810,189,982
Number of Sequences: 23463169
Number of extensions: 320863981
Number of successful extensions: 1013605
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7140
Number of HSP's successfully gapped in prelim test: 3489
Number of HSP's that attempted gapping in prelim test: 855716
Number of HSP's gapped (non-prelim): 56793
length of query: 498
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 351
effective length of database: 8,910,109,524
effective search space: 3127448442924
effective search space used: 3127448442924
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 79 (35.0 bits)