BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010881
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+W +L N Y K G A + + K E NA +W + N Y + +++A+E+ Y +
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEY--YQK 68
Query: 213 LCGFRPNHA 221
PN+A
Sbjct: 69 ALELDPNNA 77
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+W +L N Y K G A + + K E NA +W + N Y + + EA+E+ Y +
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY--YQK 68
Query: 213 LCGFRPNHA 221
PN+A
Sbjct: 69 ALELDPNNA 77
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+W +L N Y K G A + + K E NA +W + N Y + + EA+E+ Y +
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY--YQK 68
Query: 213 LCGFRPNHA 221
PN+A
Sbjct: 69 ALELDPNNA 77
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+W +L N Y K G A + + K E NA +W + N Y + + EA+E+ Y +
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY--YQK 102
Query: 213 LCGFRPNHA 221
PN+A
Sbjct: 103 ALELDPNNA 111
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+W +L N Y K G A + + K E NA +W + N Y + + EA+E+ Y +
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY--YQK 68
Query: 213 LCGFRPNHA 221
PN+A
Sbjct: 69 ALELYPNNA 77
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
+W +L N Y K G A + + K E NA +W + N Y + + EA+E+ Y +
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY--YQK 102
Query: 213 LCGFRPNHA 221
PN+A
Sbjct: 103 ALELYPNNA 111
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHF 208
R +W +L N Y K G A + + K E ++A +W + N Y + + EA+E++
Sbjct: 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 152 RDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHF 208
R +W +L N Y K G A + + K E ++A +W + N Y + + EA+E++
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHF 208
+W +L N Y K G A + + K E ++A +W + N Y + + EA+E++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 58
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHF 208
+W +L N Y K G A + + K E ++A +W + N Y + + EA+E++
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV-------------DLLGRAGMLEAAKKV 355
F+ ++ G +P E++SE Y +E G V DLL G +EA K+
Sbjct: 89 FVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKL 148
Query: 356 VREM 359
+R +
Sbjct: 149 IRRL 152
>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 544
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL---- 371
G VP ES+ +++ +E G + + L +G+L+A KV MP+ + L
Sbjct: 158 GAVPPESV-DLFAVEGGTAAMAYIFESLRISGLLKAGDKVAIGMPVFTPYIEIPELAQYD 216
Query: 372 LNACRVHGDVDLG 384
L +H D D G
Sbjct: 217 LKEVPIHADPDNG 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,885,698
Number of Sequences: 62578
Number of extensions: 610830
Number of successful extensions: 1604
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1580
Number of HSP's gapped (non-prelim): 23
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)