Query 010881
Match_columns 498
No_of_seqs 564 out of 3388
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9.2E-75 2E-79 605.6 55.4 482 2-487 204-779 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.4E-73 5.1E-78 581.5 52.4 482 2-489 104-618 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.8E-60 3.9E-65 498.0 46.7 421 2-425 103-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 9.7E-60 2.1E-64 484.0 47.9 419 2-434 387-847 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 5.5E-59 1.2E-63 478.4 45.8 448 3-482 424-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7.2E-55 1.6E-59 445.5 40.8 428 2-435 140-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-26 7.9E-31 244.3 44.7 408 2-430 448-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-26 1.4E-30 242.4 45.7 404 3-428 415-832 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 2E-22 4.3E-27 185.6 27.5 378 19-417 115-508 (966)
10 KOG4626 O-linked N-acetylgluco 99.9 6.7E-22 1.5E-26 182.1 27.3 357 53-429 116-486 (966)
11 PRK11447 cellulose synthase su 99.9 8E-20 1.7E-24 196.8 45.5 376 27-428 276-700 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-20 1.1E-24 186.5 38.8 245 168-428 308-571 (615)
13 PRK11447 cellulose synthase su 99.9 1.4E-19 2.9E-24 195.1 43.6 404 2-427 286-739 (1157)
14 PRK11788 tetratricopeptide rep 99.9 3.4E-20 7.4E-25 178.3 30.2 300 98-436 45-355 (389)
15 PRK10049 pgaA outer membrane p 99.9 2.7E-18 5.9E-23 177.0 43.4 403 17-429 12-457 (765)
16 PRK15174 Vi polysaccharide exp 99.9 9.1E-19 2E-23 176.7 38.7 347 36-399 19-386 (656)
17 PRK15174 Vi polysaccharide exp 99.9 5.1E-19 1.1E-23 178.5 36.7 351 64-430 16-383 (656)
18 PRK09782 bacteriophage N4 rece 99.9 1.1E-17 2.4E-22 172.8 47.0 241 220-481 477-744 (987)
19 PRK11788 tetratricopeptide rep 99.9 3.6E-19 7.7E-24 171.2 32.4 288 60-395 42-348 (389)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-17 3.5E-22 168.2 39.6 364 23-399 130-576 (615)
21 PRK10049 pgaA outer membrane p 99.9 4.1E-17 8.9E-22 168.3 42.9 377 3-401 33-463 (765)
22 PRK14574 hmsH outer membrane p 99.8 1.6E-15 3.4E-20 153.9 42.8 201 225-429 297-514 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.7E-14 3.8E-19 149.4 39.5 381 26-430 319-742 (987)
24 KOG2002 TPR-containing nuclear 99.7 1.2E-14 2.6E-19 141.7 32.0 392 17-425 267-706 (1018)
25 PRK14574 hmsH outer membrane p 99.7 9.2E-14 2E-18 141.2 39.9 379 3-401 52-520 (822)
26 KOG4422 Uncharacterized conser 99.7 1.2E-13 2.7E-18 122.9 34.6 275 2-281 132-459 (625)
27 KOG0547 Translocase of outer m 99.7 1.5E-14 3.1E-19 130.8 27.5 353 56-427 118-565 (606)
28 KOG2002 TPR-containing nuclear 99.6 1.2E-12 2.5E-17 128.1 33.4 405 52-482 269-717 (1018)
29 KOG2076 RNA polymerase III tra 99.6 6.1E-13 1.3E-17 129.1 30.7 331 96-438 147-522 (895)
30 PF13429 TPR_15: Tetratricopep 99.6 1.4E-15 2.9E-20 138.7 10.7 223 187-426 46-275 (280)
31 KOG4422 Uncharacterized conser 99.6 6.6E-13 1.4E-17 118.3 26.8 348 16-397 203-593 (625)
32 PRK10747 putative protoheme IX 99.6 8.8E-13 1.9E-17 125.8 28.6 245 165-427 129-389 (398)
33 KOG1155 Anaphase-promoting com 99.6 1.9E-12 4.1E-17 116.6 28.5 244 165-426 273-534 (559)
34 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.7E-18 129.8 21.1 274 138-430 334-622 (638)
35 KOG2003 TPR repeat-containing 99.6 7.5E-13 1.6E-17 118.8 24.9 363 36-415 251-710 (840)
36 KOG2076 RNA polymerase III tra 99.6 1.1E-11 2.4E-16 120.5 33.6 341 36-393 153-554 (895)
37 KOG1915 Cell cycle control pro 99.6 2E-11 4.3E-16 110.4 31.4 382 36-436 87-508 (677)
38 PRK10747 putative protoheme IX 99.6 4.5E-12 9.6E-17 121.0 29.4 280 100-395 96-391 (398)
39 KOG1915 Cell cycle control pro 99.6 5.4E-11 1.2E-15 107.6 33.8 402 2-426 90-583 (677)
40 PF13429 TPR_15: Tetratricopep 99.6 3.9E-14 8.5E-19 129.1 12.6 216 129-359 50-274 (280)
41 KOG0495 HAT repeat protein [RN 99.5 3.2E-10 6.9E-15 106.7 37.2 362 54-438 517-888 (913)
42 KOG0495 HAT repeat protein [RN 99.5 6.2E-10 1.3E-14 104.8 38.1 389 17-428 377-782 (913)
43 KOG2003 TPR repeat-containing 99.5 3.5E-11 7.5E-16 108.3 28.1 151 265-428 534-689 (840)
44 TIGR00540 hemY_coli hemY prote 99.5 2.5E-11 5.5E-16 116.5 28.9 252 162-426 126-397 (409)
45 KOG1155 Anaphase-promoting com 99.5 3.5E-11 7.5E-16 108.6 27.1 296 119-427 160-494 (559)
46 TIGR00540 hemY_coli hemY prote 99.5 4.8E-11 1E-15 114.6 30.2 281 99-393 95-398 (409)
47 KOG4318 Bicoid mRNA stability 99.5 3.1E-11 6.8E-16 117.0 27.8 408 6-432 11-598 (1088)
48 KOG1126 DNA-binding cell divis 99.5 3.9E-12 8.5E-17 119.9 20.8 277 103-400 334-626 (638)
49 COG2956 Predicted N-acetylgluc 99.5 9.1E-11 2E-15 101.2 24.9 298 101-442 48-361 (389)
50 COG2956 Predicted N-acetylgluc 99.5 1.8E-10 3.9E-15 99.4 26.5 287 55-393 38-346 (389)
51 TIGR02521 type_IV_pilW type IV 99.4 9.3E-11 2E-15 104.0 23.2 162 255-427 65-231 (234)
52 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.3E-14 97.6 28.5 291 24-320 86-395 (400)
53 KOG1129 TPR repeat-containing 99.4 1.8E-11 4E-16 105.5 15.5 226 188-429 226-459 (478)
54 COG3071 HemY Uncharacterized e 99.4 2.8E-09 6.1E-14 95.0 29.0 276 101-393 97-389 (400)
55 KOG1173 Anaphase-promoting com 99.4 1.3E-09 2.9E-14 101.1 27.3 249 164-427 254-517 (611)
56 KOG1173 Anaphase-promoting com 99.3 3.2E-09 7E-14 98.6 27.4 261 95-371 251-528 (611)
57 PF13041 PPR_2: PPR repeat fam 99.3 3E-12 6.4E-17 82.1 5.2 50 51-100 1-50 (50)
58 TIGR02521 type_IV_pilW type IV 99.3 1.5E-09 3.2E-14 96.2 24.4 196 185-395 31-233 (234)
59 PF13041 PPR_2: PPR repeat fam 99.3 7.5E-12 1.6E-16 80.3 6.7 50 183-232 1-50 (50)
60 KOG1840 Kinesin light chain [C 99.3 7.5E-10 1.6E-14 105.6 22.5 234 186-427 200-478 (508)
61 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.1E-14 101.3 25.9 245 90-393 201-478 (508)
62 PRK12370 invasion protein regu 99.3 1.2E-09 2.7E-14 109.0 24.0 257 153-429 255-536 (553)
63 KOG1174 Anaphase-promoting com 99.3 5.9E-08 1.3E-12 86.9 31.4 299 151-491 229-539 (564)
64 KOG4318 Bicoid mRNA stability 99.3 4.8E-09 1E-13 102.3 25.7 245 75-348 12-286 (1088)
65 PRK12370 invasion protein regu 99.2 1.6E-09 3.5E-14 108.1 22.7 227 184-428 255-502 (553)
66 KOG0547 Translocase of outer m 99.2 2.5E-08 5.3E-13 91.2 27.5 358 26-396 121-568 (606)
67 KOG1129 TPR repeat-containing 99.2 2.9E-10 6.4E-15 98.2 14.4 230 158-400 227-464 (478)
68 KOG4162 Predicted calmodulin-b 99.2 1.2E-07 2.7E-12 91.5 32.1 405 8-429 311-784 (799)
69 KOG0548 Molecular co-chaperone 99.2 5E-08 1.1E-12 90.5 28.0 367 36-429 16-456 (539)
70 PRK11189 lipoprotein NlpI; Pro 99.2 6.1E-09 1.3E-13 95.3 20.7 211 200-429 41-266 (296)
71 COG3063 PilF Tfp pilus assembl 99.1 4.2E-09 9.1E-14 87.1 16.6 161 257-430 37-204 (250)
72 COG3063 PilF Tfp pilus assembl 99.1 4.7E-08 1E-12 81.0 22.6 199 187-400 37-242 (250)
73 KOG1156 N-terminal acetyltrans 99.1 1.6E-06 3.4E-11 82.5 35.4 387 36-430 55-470 (700)
74 KOG2376 Signal recognition par 99.1 9.1E-07 2E-11 83.1 33.3 374 27-425 19-517 (652)
75 KOG2047 mRNA splicing factor [ 99.1 1.4E-06 3.1E-11 82.6 34.7 215 198-426 360-613 (835)
76 KOG1125 TPR repeat-containing 99.1 4.1E-09 8.9E-14 98.3 17.4 254 193-475 293-558 (579)
77 KOG1174 Anaphase-promoting com 99.1 7E-08 1.5E-12 86.5 23.7 303 86-403 192-509 (564)
78 KOG0624 dsRNA-activated protei 99.1 4.8E-07 1E-11 79.3 26.6 291 128-429 43-371 (504)
79 PF12569 NARP1: NMDA receptor- 99.1 3.4E-06 7.3E-11 81.9 35.3 279 27-314 11-333 (517)
80 KOG2376 Signal recognition par 99.1 1.7E-06 3.7E-11 81.4 31.3 353 60-428 19-487 (652)
81 PRK11189 lipoprotein NlpI; Pro 99.0 1.4E-07 3E-12 86.4 23.9 196 185-398 64-269 (296)
82 KOG2047 mRNA splicing factor [ 99.0 1.9E-05 4E-10 75.3 36.5 357 54-431 103-539 (835)
83 KOG3617 WD40 and TPR repeat-co 99.0 1E-06 2.2E-11 85.7 28.9 351 19-423 725-1169(1416)
84 PF04733 Coatomer_E: Coatomer 99.0 2.8E-08 6E-13 89.6 17.4 219 188-427 38-264 (290)
85 KOG0624 dsRNA-activated protei 99.0 2.2E-06 4.7E-11 75.3 27.8 322 54-405 39-381 (504)
86 PF04733 Coatomer_E: Coatomer 99.0 5.9E-08 1.3E-12 87.5 18.2 224 157-399 38-270 (290)
87 KOG3785 Uncharacterized conser 99.0 4.1E-07 8.8E-12 80.1 22.3 348 36-399 36-495 (557)
88 KOG1156 N-terminal acetyltrans 99.0 4.5E-06 9.8E-11 79.5 30.4 386 22-430 10-436 (700)
89 KOG4162 Predicted calmodulin-b 98.9 3.9E-06 8.6E-11 81.4 30.0 364 63-429 294-750 (799)
90 KOG0985 Vesicle coat protein c 98.9 6.8E-06 1.5E-10 82.0 31.7 237 137-411 1089-1325(1666)
91 KOG3785 Uncharacterized conser 98.9 8.9E-06 1.9E-10 71.9 28.7 364 60-430 29-492 (557)
92 PF12569 NARP1: NMDA receptor- 98.9 8.2E-07 1.8E-11 86.1 24.5 263 162-430 12-293 (517)
93 KOG4340 Uncharacterized conser 98.9 4.1E-06 8.8E-11 72.2 25.5 284 58-359 15-336 (459)
94 KOG3616 Selective LIM binding 98.9 2.6E-06 5.7E-11 82.0 25.6 165 194-390 741-907 (1636)
95 PRK10370 formate-dependent nit 98.9 1.7E-07 3.7E-12 79.8 16.3 148 262-430 23-175 (198)
96 PRK15359 type III secretion sy 98.8 1.4E-07 3E-12 76.0 13.4 120 278-410 16-137 (144)
97 PRK04841 transcriptional regul 98.8 4.7E-05 1E-09 81.9 36.3 404 4-429 294-761 (903)
98 cd05804 StaR_like StaR_like; a 98.8 1.8E-05 3.9E-10 75.2 29.3 193 225-429 119-337 (355)
99 KOG0985 Vesicle coat protein c 98.8 2.9E-05 6.4E-10 77.6 29.5 202 184-425 1103-1305(1666)
100 cd05804 StaR_like StaR_like; a 98.8 4.4E-05 9.5E-10 72.5 30.9 194 161-359 121-333 (355)
101 KOG1127 TPR repeat-containing 98.7 3.8E-06 8.2E-11 83.7 21.9 388 7-424 478-909 (1238)
102 PRK15359 type III secretion sy 98.7 3.5E-07 7.6E-12 73.7 12.6 95 335-429 26-122 (144)
103 TIGR03302 OM_YfiO outer membra 98.7 6.9E-07 1.5E-11 79.3 15.7 166 253-428 31-232 (235)
104 PRK15179 Vi polysaccharide bio 98.7 2.7E-06 5.8E-11 85.9 20.4 139 252-403 83-226 (694)
105 KOG4340 Uncharacterized conser 98.7 1.4E-05 3.1E-10 69.0 21.5 390 15-427 5-442 (459)
106 PLN02789 farnesyltranstransfer 98.6 1.3E-05 2.9E-10 73.4 22.4 221 190-426 42-300 (320)
107 KOG1128 Uncharacterized conser 98.6 1E-06 2.2E-11 84.9 15.4 215 189-430 402-618 (777)
108 COG5010 TadD Flp pilus assembl 98.6 4.1E-06 8.9E-11 71.2 17.2 151 259-422 70-225 (257)
109 KOG3617 WD40 and TPR repeat-co 98.6 7.5E-05 1.6E-09 73.3 27.5 202 19-245 756-992 (1416)
110 PF12854 PPR_1: PPR repeat 98.6 7.7E-08 1.7E-12 55.2 4.3 32 250-281 2-33 (34)
111 KOG3616 Selective LIM binding 98.6 0.0001 2.2E-09 71.5 27.1 259 131-429 740-1025(1636)
112 PRK04841 transcriptional regul 98.6 0.00015 3.2E-09 78.2 31.9 316 36-359 388-757 (903)
113 KOG1070 rRNA processing protei 98.6 7.9E-06 1.7E-10 84.2 20.2 202 217-431 1454-1666(1710)
114 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.4E-12 54.6 4.3 32 328-359 2-33 (34)
115 KOG3081 Vesicle coat complex C 98.6 4.4E-05 9.5E-10 65.1 21.3 216 190-426 46-269 (299)
116 KOG1125 TPR repeat-containing 98.6 1E-05 2.2E-10 76.2 19.3 240 132-386 294-563 (579)
117 PRK10370 formate-dependent nit 98.6 1.1E-05 2.4E-10 68.8 18.0 122 268-402 52-181 (198)
118 PRK15363 pathogenicity island 98.5 2.5E-06 5.4E-11 67.6 12.2 97 332-428 34-132 (157)
119 KOG1127 TPR repeat-containing 98.5 7.2E-05 1.6E-09 75.0 24.5 95 19-116 525-624 (1238)
120 PRK14720 transcript cleavage f 98.5 5.6E-05 1.2E-09 77.4 24.2 180 191-410 89-268 (906)
121 KOG3060 Uncharacterized conser 98.5 0.00012 2.7E-09 62.0 21.4 192 198-403 25-229 (289)
122 KOG1914 mRNA cleavage and poly 98.5 0.0014 3.1E-08 61.7 32.8 390 17-425 17-536 (656)
123 PLN02789 farnesyltranstransfer 98.5 4.8E-05 1E-09 69.7 20.6 198 199-428 34-250 (320)
124 TIGR02552 LcrH_SycD type III s 98.4 3.1E-06 6.7E-11 67.8 10.9 98 332-429 16-115 (135)
125 KOG1070 rRNA processing protei 98.4 5.8E-05 1.3E-09 78.2 21.5 207 111-320 1447-1668(1710)
126 KOG0548 Molecular co-chaperone 98.4 0.00063 1.4E-08 64.0 26.4 394 3-424 20-485 (539)
127 TIGR03302 OM_YfiO outer membra 98.4 3.9E-05 8.5E-10 68.0 18.5 186 183-396 31-234 (235)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 9.8E-06 2.1E-10 75.7 14.3 122 289-426 172-295 (395)
129 COG5010 TadD Flp pilus assembl 98.4 9.5E-05 2.1E-09 63.1 18.5 155 224-392 70-229 (257)
130 KOG1128 Uncharacterized conser 98.4 3.1E-05 6.8E-10 75.0 17.4 179 223-429 401-583 (777)
131 PRK15179 Vi polysaccharide bio 98.3 0.00017 3.7E-09 73.1 22.8 195 156-373 30-230 (694)
132 COG4783 Putative Zn-dependent 98.3 6E-05 1.3E-09 69.9 17.4 120 295-427 315-436 (484)
133 KOG3081 Vesicle coat complex C 98.3 0.00061 1.3E-08 58.4 21.5 173 208-399 96-276 (299)
134 KOG1914 mRNA cleavage and poly 98.2 0.005 1.1E-07 58.3 29.5 366 2-381 36-526 (656)
135 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.6E-11 50.1 4.3 35 54-88 1-35 (35)
136 PF13812 PPR_3: Pentatricopept 98.2 3E-06 6.4E-11 49.1 4.1 33 54-86 2-34 (34)
137 COG4783 Putative Zn-dependent 98.2 0.00024 5.3E-09 66.0 18.3 137 263-429 314-455 (484)
138 TIGR00756 PPR pentatricopeptid 98.2 4.3E-06 9.4E-11 48.7 4.5 34 186-219 1-34 (35)
139 PRK14720 transcript cleavage f 98.2 0.0011 2.3E-08 68.3 24.1 217 52-315 30-252 (906)
140 PF13812 PPR_3: Pentatricopept 98.1 6.6E-06 1.4E-10 47.5 4.4 33 186-218 2-34 (34)
141 TIGR02552 LcrH_SycD type III s 98.1 0.00012 2.6E-09 58.5 13.3 103 285-400 16-120 (135)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3.1E-09 68.1 14.9 122 159-282 174-295 (395)
143 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.2E-05 1.3E-09 58.5 10.7 96 334-429 3-106 (119)
144 cd00189 TPR Tetratricopeptide 98.0 4.9E-05 1.1E-09 56.1 9.6 94 335-428 2-97 (100)
145 KOG3060 Uncharacterized conser 98.0 0.00085 1.8E-08 57.1 17.2 185 233-430 25-222 (289)
146 KOG0553 TPR repeat-containing 98.0 3.2E-05 7E-10 67.2 9.2 87 341-427 89-177 (304)
147 PF12895 Apc3: Anaphase-promot 98.0 5.6E-06 1.2E-10 59.8 4.0 78 346-424 2-83 (84)
148 KOG0550 Molecular chaperone (D 98.0 0.0007 1.5E-08 61.6 17.5 270 98-396 59-352 (486)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00015 3.3E-09 56.3 12.3 107 287-403 3-114 (119)
150 KOG0553 TPR repeat-containing 98.0 7.8E-05 1.7E-09 64.9 11.0 110 294-416 89-200 (304)
151 PF13414 TPR_11: TPR repeat; P 98.0 1.8E-05 4E-10 54.6 5.7 64 364-427 2-66 (69)
152 PLN03088 SGT1, suppressor of 98.0 0.00018 4E-09 67.5 13.9 106 293-411 9-116 (356)
153 KOG2053 Mitochondrial inherita 97.9 0.03 6.5E-07 56.4 31.3 211 36-250 23-256 (932)
154 PLN03088 SGT1, suppressor of 97.9 7.9E-05 1.7E-09 70.0 10.6 91 339-429 8-100 (356)
155 PF09976 TPR_21: Tetratricopep 97.9 0.00053 1.1E-08 55.4 13.9 120 56-178 15-142 (145)
156 COG4235 Cytochrome c biogenesi 97.9 0.00011 2.4E-09 64.4 10.2 103 332-434 155-262 (287)
157 PRK02603 photosystem I assembl 97.9 0.00021 4.5E-09 59.8 11.0 83 332-414 34-121 (172)
158 PF09976 TPR_21: Tetratricopep 97.9 0.0016 3.4E-08 52.6 15.8 125 187-312 14-144 (145)
159 PRK02603 photosystem I assembl 97.9 0.00049 1.1E-08 57.5 13.3 114 288-414 37-166 (172)
160 PF13432 TPR_16: Tetratricopep 97.9 3.5E-05 7.6E-10 52.4 5.2 58 371-428 3-60 (65)
161 PF08579 RPM2: Mitochondrial r 97.8 0.0003 6.5E-09 51.8 9.8 81 187-267 27-116 (120)
162 cd00189 TPR Tetratricopeptide 97.8 0.00036 7.7E-09 51.3 10.7 97 288-397 2-100 (100)
163 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.8E-10 43.8 3.4 31 54-84 1-31 (31)
164 PF01535 PPR: PPR repeat; Int 97.8 3.3E-05 7.2E-10 43.4 3.6 30 186-215 1-30 (31)
165 PF14938 SNAP: Soluble NSF att 97.8 0.0023 5E-08 58.2 17.2 99 288-393 157-265 (282)
166 PF13432 TPR_16: Tetratricopep 97.8 9.3E-05 2E-09 50.3 6.2 61 339-399 3-65 (65)
167 PRK15363 pathogenicity island 97.8 0.00065 1.4E-08 54.1 11.6 98 285-395 34-133 (157)
168 PRK10866 outer membrane biogen 97.8 0.01 2.2E-07 52.5 20.4 192 52-245 31-237 (243)
169 PRK15331 chaperone protein Sic 97.7 0.00062 1.4E-08 54.4 11.2 94 334-427 38-133 (165)
170 PF10037 MRP-S27: Mitochondria 97.7 0.00046 9.9E-09 65.1 11.8 119 16-136 62-186 (429)
171 PF14559 TPR_19: Tetratricopep 97.7 6.7E-05 1.5E-09 51.6 4.9 53 376-428 2-54 (68)
172 PRK10153 DNA-binding transcrip 97.7 0.0015 3.3E-08 64.2 15.9 138 252-400 334-488 (517)
173 CHL00033 ycf3 photosystem I as 97.7 0.00061 1.3E-08 56.7 10.9 94 333-426 35-140 (168)
174 PF05843 Suf: Suppressor of fo 97.7 0.00098 2.1E-08 60.4 13.0 131 256-399 2-141 (280)
175 PF08579 RPM2: Mitochondrial r 97.7 0.00048 1E-08 50.8 8.7 80 56-135 28-116 (120)
176 CHL00033 ycf3 photosystem I as 97.6 0.0022 4.7E-08 53.4 13.7 117 286-415 35-167 (168)
177 PF04840 Vps16_C: Vps16, C-ter 97.6 0.053 1.1E-06 49.8 27.1 25 23-49 3-27 (319)
178 PF13414 TPR_11: TPR repeat; P 97.6 0.00014 3.1E-09 50.1 5.2 65 332-396 2-69 (69)
179 PF07079 DUF1347: Protein of u 97.6 0.061 1.3E-06 50.1 29.5 121 296-426 389-522 (549)
180 PF13371 TPR_9: Tetratricopept 97.6 0.00018 4E-09 50.2 5.6 57 373-429 3-59 (73)
181 PF14938 SNAP: Soluble NSF att 97.6 0.013 2.7E-07 53.4 19.0 211 56-293 38-275 (282)
182 PF14559 TPR_19: Tetratricopep 97.6 9.2E-05 2E-09 50.9 3.9 63 344-406 2-66 (68)
183 PF12688 TPR_5: Tetratrico pep 97.5 0.0015 3.3E-08 50.1 10.3 90 337-426 5-102 (120)
184 KOG1130 Predicted G-alpha GTPa 97.5 0.0008 1.7E-08 61.1 9.9 99 288-393 237-343 (639)
185 KOG2053 Mitochondrial inherita 97.5 0.14 3.1E-06 51.9 35.7 192 21-215 42-256 (932)
186 PRK10153 DNA-binding transcrip 97.5 0.0045 9.7E-08 61.0 15.8 134 283-430 334-484 (517)
187 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.5E-08 61.5 12.2 116 153-268 65-186 (429)
188 PF12895 Apc3: Anaphase-promot 97.4 0.00035 7.6E-09 50.3 5.4 48 198-245 2-50 (84)
189 COG4700 Uncharacterized protei 97.4 0.012 2.7E-07 47.7 14.1 131 284-427 87-221 (251)
190 PF06239 ECSIT: Evolutionarily 97.3 0.0013 2.9E-08 54.9 8.4 101 38-138 30-153 (228)
191 KOG0550 Molecular chaperone (D 97.3 0.023 5E-07 52.1 16.7 264 59-359 55-347 (486)
192 PF04840 Vps16_C: Vps16, C-ter 97.3 0.13 2.9E-06 47.3 28.3 278 55-387 2-284 (319)
193 PF05843 Suf: Suppressor of fo 97.3 0.0084 1.8E-07 54.4 14.0 128 186-315 2-136 (280)
194 PRK10803 tol-pal system protei 97.3 0.002 4.4E-08 57.3 9.6 96 333-428 143-246 (263)
195 PF13371 TPR_9: Tetratricopept 97.3 0.0012 2.7E-08 45.9 6.7 64 340-403 2-67 (73)
196 PF12688 TPR_5: Tetratrico pep 97.3 0.013 2.8E-07 45.0 12.6 106 191-297 7-117 (120)
197 KOG1130 Predicted G-alpha GTPa 97.3 0.0069 1.5E-07 55.3 12.6 132 288-427 197-343 (639)
198 PF06239 ECSIT: Evolutionarily 97.2 0.0038 8.2E-08 52.3 9.8 96 175-270 35-153 (228)
199 KOG1538 Uncharacterized conser 97.2 0.041 8.8E-07 53.4 17.6 232 22-315 600-846 (1081)
200 KOG2280 Vacuolar assembly/sort 97.2 0.27 5.9E-06 48.9 23.1 79 332-421 714-792 (829)
201 PRK10866 outer membrane biogen 97.2 0.15 3.4E-06 45.0 22.7 62 188-249 35-98 (243)
202 KOG2280 Vacuolar assembly/sort 97.1 0.33 7.1E-06 48.4 25.1 332 63-427 399-772 (829)
203 PF13431 TPR_17: Tetratricopep 97.1 0.00032 6.9E-09 40.1 2.0 33 387-419 1-33 (34)
204 PF13428 TPR_14: Tetratricopep 97.1 0.001 2.2E-08 40.8 4.5 42 366-407 2-43 (44)
205 PRK10803 tol-pal system protei 97.1 0.011 2.3E-07 52.8 12.3 103 288-400 145-252 (263)
206 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0021 4.6E-08 60.2 8.1 63 332-394 74-141 (453)
207 KOG2796 Uncharacterized conser 97.1 0.017 3.7E-07 49.7 12.6 161 258-430 139-317 (366)
208 COG4235 Cytochrome c biogenesi 97.1 0.017 3.7E-07 51.0 12.9 102 285-399 155-261 (287)
209 COG4700 Uncharacterized protei 97.0 0.13 2.9E-06 42.0 16.6 62 253-314 87-152 (251)
210 KOG1538 Uncharacterized conser 97.0 0.069 1.5E-06 51.9 16.9 101 267-390 728-829 (1081)
211 KOG0543 FKBP-type peptidyl-pro 97.0 0.023 5E-07 52.2 13.3 61 367-427 259-319 (397)
212 PF03704 BTAD: Bacterial trans 97.0 0.0072 1.6E-07 48.9 9.5 60 368-427 65-124 (146)
213 KOG2796 Uncharacterized conser 97.0 0.051 1.1E-06 46.9 14.2 160 156-315 138-315 (366)
214 PF13525 YfiO: Outer membrane 96.9 0.051 1.1E-06 46.7 14.7 62 59-120 11-74 (203)
215 PF13512 TPR_18: Tetratricopep 96.9 0.022 4.8E-07 44.7 11.0 123 334-482 11-139 (142)
216 KOG2041 WD40 repeat protein [G 96.9 0.54 1.2E-05 46.5 26.4 184 38-243 679-901 (1189)
217 COG3898 Uncharacterized membra 96.9 0.37 8E-06 44.3 25.1 270 136-427 97-391 (531)
218 PF13424 TPR_12: Tetratricopep 96.8 0.0023 5E-08 45.2 4.6 61 366-426 6-73 (78)
219 PF13424 TPR_12: Tetratricopep 96.8 0.0027 5.8E-08 44.9 4.7 62 333-394 5-75 (78)
220 KOG4555 TPR repeat-containing 96.6 0.02 4.3E-07 43.5 8.2 92 340-431 50-147 (175)
221 PRK11906 transcriptional regul 96.5 0.097 2.1E-06 49.5 13.8 132 287-429 252-402 (458)
222 PF13525 YfiO: Outer membrane 96.5 0.49 1.1E-05 40.6 18.2 60 190-249 10-71 (203)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.81 1.8E-05 43.0 28.9 131 255-399 397-536 (660)
224 KOG1585 Protein required for f 96.4 0.21 4.6E-06 42.7 14.2 206 187-422 33-250 (308)
225 KOG0543 FKBP-type peptidyl-pro 96.4 0.068 1.5E-06 49.3 12.1 96 333-428 257-355 (397)
226 KOG2041 WD40 repeat protein [G 96.4 1.2 2.6E-05 44.3 20.6 133 36-183 748-881 (1189)
227 COG1729 Uncharacterized protei 96.4 0.025 5.4E-07 49.3 8.8 91 335-428 144-244 (262)
228 PF12921 ATP13: Mitochondrial 96.3 0.061 1.3E-06 41.8 10.0 87 286-374 2-97 (126)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.027 5.9E-07 53.0 9.3 67 362-428 71-141 (453)
230 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.99 2.1E-05 42.4 26.0 130 286-427 397-530 (660)
231 PF12921 ATP13: Mitochondrial 96.1 0.13 2.8E-06 40.0 10.7 78 332-409 1-98 (126)
232 PRK11906 transcriptional regul 96.0 0.38 8.2E-06 45.7 15.2 140 270-423 273-431 (458)
233 PF13281 DUF4071: Domain of un 96.0 1.4 3.1E-05 41.2 20.9 35 364-398 304-338 (374)
234 PF07079 DUF1347: Protein of u 95.9 1.5 3.4E-05 41.3 27.6 119 265-391 389-521 (549)
235 COG1729 Uncharacterized protei 95.9 0.15 3.2E-06 44.7 11.2 104 288-402 144-252 (262)
236 PF13281 DUF4071: Domain of un 95.9 0.32 6.9E-06 45.3 14.0 153 62-214 150-334 (374)
237 PF04053 Coatomer_WDAD: Coatom 95.8 0.55 1.2E-05 45.4 15.7 154 62-243 270-425 (443)
238 KOG1941 Acetylcholine receptor 95.8 0.32 6.9E-06 44.2 12.9 130 289-425 125-272 (518)
239 PRK15331 chaperone protein Sic 95.8 0.43 9.3E-06 38.5 12.5 84 230-314 47-133 (165)
240 PF10300 DUF3808: Protein of u 95.7 0.39 8.5E-06 47.1 14.8 156 258-427 191-375 (468)
241 PF04184 ST7: ST7 protein; In 95.7 2.1 4.5E-05 41.1 21.2 189 190-399 173-380 (539)
242 PF03704 BTAD: Bacterial trans 95.7 0.066 1.4E-06 43.2 8.0 57 290-359 66-122 (146)
243 PF04053 Coatomer_WDAD: Coatom 95.6 1 2.2E-05 43.6 16.8 159 97-281 270-428 (443)
244 KOG3941 Intermediate in Toll s 95.6 0.078 1.7E-06 46.2 8.1 101 39-139 51-174 (406)
245 smart00299 CLH Clathrin heavy 95.5 0.97 2.1E-05 36.0 15.5 123 226-376 13-136 (140)
246 PF09205 DUF1955: Domain of un 95.5 0.47 1E-05 36.4 11.1 65 367-431 88-152 (161)
247 COG0457 NrfG FOG: TPR repeat [ 95.4 1.5 3.3E-05 37.9 23.0 198 221-428 60-265 (291)
248 PF07719 TPR_2: Tetratricopept 95.3 0.059 1.3E-06 30.5 4.8 33 366-398 2-34 (34)
249 KOG2114 Vacuolar assembly/sort 95.3 4 8.6E-05 41.8 20.0 208 157-393 337-549 (933)
250 PF00515 TPR_1: Tetratricopept 95.3 0.043 9.3E-07 31.2 4.1 32 366-397 2-33 (34)
251 KOG2610 Uncharacterized conser 95.3 0.22 4.8E-06 44.7 10.1 116 298-426 115-236 (491)
252 KOG3941 Intermediate in Toll s 95.1 0.22 4.9E-06 43.5 9.5 109 174-282 54-186 (406)
253 COG4105 ComL DNA uptake lipopr 94.9 2.3 5E-05 37.1 17.8 184 55-248 37-232 (254)
254 PF07035 Mic1: Colon cancer-as 94.9 1.6 3.5E-05 35.7 13.5 56 188-247 92-147 (167)
255 KOG1920 IkappaB kinase complex 94.9 6.5 0.00014 42.0 22.3 26 124-149 791-818 (1265)
256 KOG4234 TPR repeat-containing 94.9 0.093 2E-06 43.3 6.2 92 340-431 102-200 (271)
257 smart00299 CLH Clathrin heavy 94.7 1.7 3.7E-05 34.6 15.4 43 93-136 12-54 (140)
258 COG3898 Uncharacterized membra 94.7 3.6 7.7E-05 38.2 29.6 285 91-393 85-391 (531)
259 PF02259 FAT: FAT domain; Int 94.7 4 8.6E-05 38.5 21.4 34 379-412 272-305 (352)
260 COG3118 Thioredoxin domain-con 94.6 1.9 4.2E-05 38.4 14.1 56 254-309 235-295 (304)
261 KOG4555 TPR repeat-containing 94.5 0.44 9.6E-06 36.5 8.6 91 295-398 52-148 (175)
262 PF10300 DUF3808: Protein of u 94.5 2.3 4.9E-05 41.9 16.0 114 168-282 247-374 (468)
263 KOG0890 Protein kinase of the 94.4 7.7 0.00017 44.7 20.9 290 128-430 1388-1733(2382)
264 COG0457 NrfG FOG: TPR repeat [ 94.4 3 6.6E-05 36.0 23.6 197 187-397 61-268 (291)
265 KOG2610 Uncharacterized conser 94.0 1.6 3.6E-05 39.4 12.4 49 101-150 116-164 (491)
266 PF00637 Clathrin: Region in C 93.9 0.14 3.1E-06 41.1 5.6 85 94-181 13-97 (143)
267 KOG1941 Acetylcholine receptor 93.7 2.1 4.5E-05 39.2 12.6 164 188-359 86-272 (518)
268 KOG1920 IkappaB kinase complex 93.7 12 0.00026 40.2 22.7 152 168-359 894-1052(1265)
269 KOG1258 mRNA processing protei 93.6 7.9 0.00017 38.1 28.3 376 22-414 47-490 (577)
270 PF13176 TPR_7: Tetratricopept 93.6 0.17 3.6E-06 29.2 3.9 26 368-393 2-27 (36)
271 COG4785 NlpI Lipoprotein NlpI, 93.5 0.75 1.6E-05 38.8 8.9 31 400-430 238-268 (297)
272 KOG4648 Uncharacterized conser 93.5 0.15 3.2E-06 45.9 5.1 87 340-426 104-192 (536)
273 PF09205 DUF1955: Domain of un 93.5 2.8 6.1E-05 32.4 12.9 64 333-396 86-151 (161)
274 PRK09687 putative lyase; Provi 93.4 6 0.00013 35.9 25.4 238 43-296 27-277 (280)
275 PF14432 DYW_deaminase: DYW fa 93.3 0.087 1.9E-06 40.3 3.1 42 435-488 2-43 (116)
276 PF07035 Mic1: Colon cancer-as 93.1 4.1 8.9E-05 33.3 16.0 132 241-393 15-148 (167)
277 PF13181 TPR_8: Tetratricopept 92.9 0.28 6E-06 27.6 4.2 31 367-397 3-33 (34)
278 KOG2114 Vacuolar assembly/sort 92.8 13 0.00028 38.3 26.5 141 60-211 375-516 (933)
279 PF00637 Clathrin: Region in C 92.7 0.0053 1.2E-07 49.4 -4.6 83 227-312 14-96 (143)
280 COG3629 DnrI DNA-binding trans 92.7 0.56 1.2E-05 41.8 7.6 61 367-427 155-215 (280)
281 PRK15180 Vi polysaccharide bio 92.7 9.7 0.00021 36.5 19.4 113 3-120 308-423 (831)
282 PF13428 TPR_14: Tetratricopep 92.7 0.41 9E-06 29.1 5.0 32 287-320 2-33 (44)
283 KOG2066 Vacuolar assembly/sort 92.6 14 0.00029 37.8 24.7 147 59-212 362-532 (846)
284 PF13512 TPR_18: Tetratricopep 92.5 4.4 9.5E-05 32.1 13.0 19 381-399 115-133 (142)
285 PRK09687 putative lyase; Provi 92.4 8.4 0.00018 35.0 27.1 226 151-397 34-266 (280)
286 KOG1585 Protein required for f 92.1 7.3 0.00016 33.8 14.4 55 334-389 191-251 (308)
287 PF13176 TPR_7: Tetratricopept 92.0 0.41 8.9E-06 27.6 4.1 26 187-212 1-26 (36)
288 PF04184 ST7: ST7 protein; In 92.0 12 0.00027 36.1 15.7 145 59-213 174-323 (539)
289 PF09613 HrpB1_HrpK: Bacterial 92.0 1 2.2E-05 36.3 7.6 83 334-416 8-95 (160)
290 COG4649 Uncharacterized protei 91.9 2.3 5E-05 34.6 9.3 49 166-214 70-123 (221)
291 TIGR02561 HrpB1_HrpK type III 91.9 0.94 2E-05 35.8 7.1 80 334-415 8-94 (153)
292 PF13374 TPR_10: Tetratricopep 91.8 0.45 9.7E-06 28.3 4.4 28 366-393 3-30 (42)
293 PF02259 FAT: FAT domain; Int 91.6 12 0.00026 35.2 19.1 27 347-373 272-300 (352)
294 COG4649 Uncharacterized protei 91.5 3.5 7.6E-05 33.6 9.9 130 52-182 58-195 (221)
295 PF09613 HrpB1_HrpK: Bacterial 91.2 6.9 0.00015 31.7 12.8 111 296-421 20-131 (160)
296 COG1747 Uncharacterized N-term 91.2 15 0.00033 35.6 16.8 93 184-281 65-157 (711)
297 PF08631 SPO22: Meiosis protei 91.2 11 0.00025 34.1 22.2 19 295-313 255-273 (278)
298 COG3118 Thioredoxin domain-con 90.9 12 0.00025 33.7 17.9 53 230-283 144-196 (304)
299 PF13174 TPR_6: Tetratricopept 90.9 0.56 1.2E-05 26.0 3.9 28 370-397 5-32 (33)
300 KOG4648 Uncharacterized conser 90.9 0.91 2E-05 41.0 6.8 98 294-404 105-204 (536)
301 COG3629 DnrI DNA-binding trans 90.3 2.2 4.8E-05 38.1 8.8 81 255-342 153-236 (280)
302 KOG4570 Uncharacterized conser 90.0 1.8 4E-05 38.7 7.8 101 15-118 59-165 (418)
303 PF10602 RPN7: 26S proteasome 89.9 6 0.00013 33.0 10.7 63 186-248 37-101 (177)
304 COG4105 ComL DNA uptake lipopr 89.6 14 0.0003 32.5 21.2 59 191-249 40-100 (254)
305 KOG1586 Protein required for f 89.5 12 0.00026 32.3 11.9 63 339-401 119-190 (288)
306 PF13170 DUF4003: Protein of u 89.5 12 0.00026 34.2 13.1 24 202-225 79-102 (297)
307 PF10602 RPN7: 26S proteasome 89.3 3.1 6.6E-05 34.7 8.6 64 54-117 37-102 (177)
308 KOG4234 TPR repeat-containing 89.0 4.6 0.0001 33.8 8.9 103 295-405 104-208 (271)
309 KOG3364 Membrane protein invol 88.8 5.1 0.00011 31.2 8.4 66 362-427 29-99 (149)
310 PF13170 DUF4003: Protein of u 88.6 6.1 0.00013 36.1 10.6 126 2-129 79-223 (297)
311 KOG0276 Vesicle coat complex C 88.2 7.2 0.00016 38.5 11.0 151 166-360 598-748 (794)
312 PF13431 TPR_17: Tetratricopep 88.1 0.79 1.7E-05 26.0 3.0 24 252-275 10-33 (34)
313 PF00515 TPR_1: Tetratricopept 88.1 0.75 1.6E-05 25.8 3.0 27 55-81 3-29 (34)
314 KOG4570 Uncharacterized conser 87.9 3.3 7.1E-05 37.2 7.9 91 158-250 68-165 (418)
315 COG4785 NlpI Lipoprotein NlpI, 87.8 16 0.00035 31.2 16.5 26 333-358 237-262 (297)
316 TIGR02561 HrpB1_HrpK type III 87.8 5 0.00011 31.9 8.1 54 376-429 21-74 (153)
317 PRK15180 Vi polysaccharide bio 87.8 6.1 0.00013 37.7 10.0 107 335-443 325-433 (831)
318 PF07719 TPR_2: Tetratricopept 87.1 0.79 1.7E-05 25.6 2.7 29 400-428 2-30 (34)
319 PRK11619 lytic murein transgly 87.0 40 0.00087 34.8 31.2 75 126-201 102-179 (644)
320 PF04097 Nic96: Nup93/Nic96; 87.0 40 0.00086 34.7 18.7 213 53-283 112-355 (613)
321 PRK10941 hypothetical protein; 87.0 5.7 0.00012 35.6 9.2 62 367-428 183-244 (269)
322 PF07721 TPR_4: Tetratricopept 86.6 0.91 2E-05 23.8 2.5 23 401-423 3-25 (26)
323 KOG4642 Chaperone-dependent E3 86.0 2.3 4.9E-05 36.6 5.7 84 344-427 21-106 (284)
324 PF14853 Fis1_TPR_C: Fis1 C-te 85.9 4.4 9.6E-05 25.8 5.8 50 401-476 3-52 (53)
325 KOG1550 Extracellular protein 85.9 35 0.00075 34.6 15.2 50 380-430 379-428 (552)
326 COG1747 Uncharacterized N-term 85.8 37 0.0008 33.2 16.2 156 52-214 65-234 (711)
327 smart00028 TPR Tetratricopepti 85.8 1.6 3.4E-05 23.4 3.6 29 368-396 4-32 (34)
328 PF14853 Fis1_TPR_C: Fis1 C-te 85.7 4.3 9.3E-05 25.8 5.6 33 369-401 5-37 (53)
329 COG2909 MalT ATP-dependent tra 85.2 53 0.0011 34.5 22.6 190 231-432 426-651 (894)
330 TIGR02508 type_III_yscG type I 84.8 13 0.00029 27.2 9.7 59 162-223 47-105 (115)
331 KOG0276 Vesicle coat complex C 84.8 11 0.00025 37.1 10.4 132 125-281 616-747 (794)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 11 0.00023 27.5 7.6 45 203-247 25-69 (103)
333 KOG1258 mRNA processing protei 84.2 47 0.001 33.1 27.1 339 52-419 44-420 (577)
334 PF13762 MNE1: Mitochondrial s 84.2 9.9 0.00021 30.2 8.2 76 23-100 42-127 (145)
335 KOG0890 Protein kinase of the 84.1 97 0.0021 36.6 25.9 349 26-407 1389-1797(2382)
336 COG3947 Response regulator con 84.1 4.3 9.3E-05 36.1 6.7 61 367-427 281-341 (361)
337 KOG2396 HAT (Half-A-TPR) repea 84.0 5.5 0.00012 38.3 7.9 85 349-437 87-174 (568)
338 PF02284 COX5A: Cytochrome c o 83.7 8.7 0.00019 28.2 7.0 56 351-406 28-86 (108)
339 PF13374 TPR_10: Tetratricopep 83.5 2.9 6.3E-05 24.5 4.2 28 287-314 3-30 (42)
340 cd08819 CARD_MDA5_2 Caspase ac 83.4 7.9 0.00017 27.5 6.6 66 4-73 21-86 (88)
341 KOG0376 Serine-threonine phosp 83.3 1.9 4.1E-05 41.1 4.6 87 340-426 11-99 (476)
342 cd00923 Cyt_c_Oxidase_Va Cytoc 83.3 15 0.00033 26.7 8.8 58 348-405 22-82 (103)
343 PF04097 Nic96: Nup93/Nic96; 83.2 59 0.0013 33.5 18.9 58 21-81 113-180 (613)
344 PF08631 SPO22: Meiosis protei 82.6 37 0.00081 30.8 23.5 99 221-320 85-191 (278)
345 PF13174 TPR_6: Tetratricopept 82.6 1.4 3.1E-05 24.3 2.4 28 401-428 2-29 (33)
346 PF02284 COX5A: Cytochrome c o 82.4 12 0.00026 27.5 7.3 47 203-249 28-74 (108)
347 PF13181 TPR_8: Tetratricopept 82.0 2.2 4.8E-05 23.8 3.1 28 400-427 2-29 (34)
348 PF10345 Cohesin_load: Cohesin 81.9 66 0.0014 33.1 23.8 186 52-247 29-252 (608)
349 PF06552 TOM20_plant: Plant sp 81.9 5.1 0.00011 33.0 6.0 34 381-414 51-84 (186)
350 PF04910 Tcf25: Transcriptiona 81.9 29 0.00063 32.8 12.0 96 332-427 39-167 (360)
351 PF11207 DUF2989: Protein of u 81.4 15 0.00032 31.1 8.6 73 202-275 123-198 (203)
352 PF06552 TOM20_plant: Plant sp 81.0 19 0.00041 29.8 8.9 74 351-431 53-139 (186)
353 COG5159 RPN6 26S proteasome re 80.8 25 0.00055 31.3 10.1 128 294-426 11-152 (421)
354 PF11207 DUF2989: Protein of u 80.7 19 0.00042 30.4 9.1 68 105-173 123-197 (203)
355 PF10579 Rapsyn_N: Rapsyn N-te 80.4 4.4 9.5E-05 28.1 4.4 45 377-421 18-65 (80)
356 KOG2066 Vacuolar assembly/sort 80.0 78 0.0017 32.7 22.6 99 97-197 365-467 (846)
357 COG2976 Uncharacterized protei 79.8 36 0.00077 28.7 13.7 85 131-215 97-189 (207)
358 COG4455 ImpE Protein of avirul 79.6 13 0.00028 31.8 7.7 73 289-374 4-81 (273)
359 COG5159 RPN6 26S proteasome re 79.5 46 0.001 29.8 12.5 57 336-392 128-192 (421)
360 KOG1308 Hsp70-interacting prot 79.2 1.2 2.6E-05 40.4 1.8 88 344-431 125-214 (377)
361 PF08311 Mad3_BUB1_I: Mad3/BUB 79.1 15 0.00032 28.6 7.7 61 361-424 62-124 (126)
362 KOG3824 Huntingtin interacting 79.0 5.7 0.00012 35.6 5.8 50 376-425 127-176 (472)
363 KOG2063 Vacuolar assembly/sort 79.0 95 0.0021 33.1 15.9 153 7-166 465-638 (877)
364 smart00386 HAT HAT (Half-A-TPR 78.4 5.7 0.00012 21.5 4.0 30 379-408 1-30 (33)
365 PF09986 DUF2225: Uncharacteri 77.7 14 0.00031 31.9 7.9 84 346-429 90-195 (214)
366 PHA02875 ankyrin repeat protei 77.1 73 0.0016 30.8 16.9 12 304-315 298-309 (413)
367 KOG0545 Aryl-hydrocarbon recep 76.6 25 0.00055 30.7 8.7 95 335-429 180-294 (329)
368 PF13929 mRNA_stabil: mRNA sta 76.2 45 0.00098 30.0 10.5 122 56-180 134-264 (292)
369 PF14561 TPR_20: Tetratricopep 75.5 6.5 0.00014 28.4 4.4 41 387-427 10-50 (90)
370 PF10345 Cohesin_load: Cohesin 75.3 1.1E+02 0.0023 31.7 25.9 80 67-146 153-248 (608)
371 TIGR03504 FimV_Cterm FimV C-te 74.9 6.8 0.00015 23.8 3.7 24 94-117 5-28 (44)
372 KOG0551 Hsp90 co-chaperone CNS 74.9 15 0.00031 33.6 7.2 94 333-426 81-180 (390)
373 KOG1550 Extracellular protein 74.7 1E+02 0.0022 31.3 19.8 272 140-429 229-539 (552)
374 KOG4507 Uncharacterized conser 74.2 8.7 0.00019 37.8 6.0 128 271-410 589-721 (886)
375 PRK13800 putative oxidoreducta 74.2 1.4E+02 0.003 32.6 26.9 255 43-314 625-880 (897)
376 TIGR03504 FimV_Cterm FimV C-te 74.0 8.9 0.00019 23.3 4.0 25 191-215 5-29 (44)
377 KOG1464 COP9 signalosome, subu 72.9 68 0.0015 28.5 19.1 271 50-359 23-329 (440)
378 KOG0686 COP9 signalosome, subu 72.2 91 0.002 29.6 12.8 155 55-213 152-332 (466)
379 PRK13342 recombination factor 72.1 99 0.0022 30.0 13.1 46 187-232 229-277 (413)
380 PF11846 DUF3366: Domain of un 71.0 21 0.00046 30.2 7.4 38 360-397 139-176 (193)
381 smart00777 Mad3_BUB1_I Mad3/BU 70.5 35 0.00076 26.5 7.6 71 350-423 50-123 (125)
382 PRK10941 hypothetical protein; 70.3 41 0.00088 30.3 9.1 69 335-403 183-253 (269)
383 COG4455 ImpE Protein of avirul 70.0 72 0.0016 27.5 11.8 72 223-295 4-81 (273)
384 KOG4077 Cytochrome c oxidase, 69.3 30 0.00066 26.6 6.7 54 352-405 68-124 (149)
385 KOG4507 Uncharacterized conser 68.7 38 0.00082 33.7 8.9 96 101-196 620-721 (886)
386 PF04910 Tcf25: Transcriptiona 68.5 1.1E+02 0.0024 29.0 19.2 140 252-415 37-194 (360)
387 TIGR02270 conserved hypothetic 66.6 1.3E+02 0.0028 29.2 25.2 189 143-359 89-278 (410)
388 PF12862 Apc5: Anaphase-promot 66.5 28 0.00061 25.3 6.3 52 344-395 9-71 (94)
389 KOG3364 Membrane protein invol 66.4 32 0.00069 27.0 6.5 70 331-400 30-106 (149)
390 KOG1464 COP9 signalosome, subu 65.3 1E+02 0.0022 27.5 17.1 123 289-413 148-286 (440)
391 TIGR02508 type_III_yscG type I 64.8 54 0.0012 24.2 9.1 79 235-316 20-98 (115)
392 PF08424 NRDE-2: NRDE-2, neces 62.9 1.3E+02 0.0029 28.0 12.6 137 332-479 18-171 (321)
393 KOG4077 Cytochrome c oxidase, 62.2 16 0.00034 28.1 4.1 32 50-81 81-112 (149)
394 COG2976 Uncharacterized protei 61.6 99 0.0022 26.1 14.2 89 228-316 97-189 (207)
395 PF10579 Rapsyn_N: Rapsyn N-te 61.6 21 0.00046 24.9 4.3 48 298-355 18-65 (80)
396 COG3947 Response regulator con 61.3 29 0.00063 31.1 6.2 58 257-314 281-341 (361)
397 PF14863 Alkyl_sulf_dimr: Alky 60.5 61 0.0013 25.8 7.4 66 349-417 57-122 (141)
398 PF07163 Pex26: Pex26 protein; 60.5 1.3E+02 0.0028 27.1 10.1 85 192-278 90-181 (309)
399 PF07163 Pex26: Pex26 protein; 60.4 66 0.0014 28.8 8.1 85 225-309 88-181 (309)
400 PF12069 DUF3549: Protein of u 59.5 1.5E+02 0.0033 27.6 11.0 164 21-193 130-306 (340)
401 PF04190 DUF410: Protein of un 59.1 1.4E+02 0.0029 26.9 16.7 157 36-214 4-170 (260)
402 KOG2300 Uncharacterized conser 58.4 1.9E+02 0.0041 28.4 18.8 158 194-358 332-510 (629)
403 COG2178 Predicted RNA-binding 58.4 1.1E+02 0.0023 25.9 8.6 92 336-427 32-149 (204)
404 PF04034 DUF367: Domain of unk 58.1 83 0.0018 24.4 7.4 64 328-391 61-125 (127)
405 PF12968 DUF3856: Domain of Un 58.0 57 0.0012 25.0 6.3 59 367-425 57-126 (144)
406 KOG4279 Serine/threonine prote 58.0 2.4E+02 0.0052 29.4 12.8 27 187-213 203-229 (1226)
407 PF12862 Apc5: Anaphase-promot 57.6 29 0.00063 25.2 5.0 54 375-428 8-70 (94)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 55.8 95 0.0021 24.1 9.2 44 304-358 81-124 (126)
409 COG4976 Predicted methyltransf 55.4 17 0.00036 31.4 3.6 52 377-428 7-58 (287)
410 PRK11619 lytic murein transgly 55.2 2.6E+02 0.0057 29.0 36.1 380 37-431 81-508 (644)
411 PF14561 TPR_20: Tetratricopep 55.2 77 0.0017 22.9 7.6 53 364-416 21-75 (90)
412 KOG1498 26S proteasome regulat 54.9 1.4E+02 0.0029 28.4 9.5 139 337-483 135-292 (439)
413 KOG2297 Predicted translation 54.4 1.1E+02 0.0024 27.9 8.5 46 155-205 295-341 (412)
414 PF13762 MNE1: Mitochondrial s 54.1 1.1E+02 0.0024 24.4 8.2 50 184-233 78-128 (145)
415 PF14669 Asp_Glu_race_2: Putat 54.0 1.3E+02 0.0029 25.3 14.4 27 254-280 180-206 (233)
416 KOG1586 Protein required for f 53.8 1.5E+02 0.0033 25.9 14.5 63 339-401 160-231 (288)
417 PF09477 Type_III_YscG: Bacter 53.7 93 0.002 23.3 8.8 79 235-316 21-99 (116)
418 PF11663 Toxin_YhaV: Toxin wit 53.4 21 0.00045 27.9 3.6 31 65-97 107-137 (140)
419 PF11848 DUF3368: Domain of un 53.2 52 0.0011 20.3 5.2 32 196-227 13-44 (48)
420 PF10366 Vps39_1: Vacuolar sor 52.8 51 0.0011 24.8 5.6 28 287-314 40-67 (108)
421 KOG4642 Chaperone-dependent E3 52.3 1.5E+02 0.0032 26.1 8.7 84 229-314 19-106 (284)
422 PRK10564 maltose regulon perip 52.2 32 0.00069 31.1 5.1 39 187-225 259-297 (303)
423 COG5191 Uncharacterized conser 51.4 37 0.00081 30.8 5.3 76 331-406 105-183 (435)
424 PF11848 DUF3368: Domain of un 50.9 46 0.00099 20.6 4.3 31 65-95 14-44 (48)
425 PF11663 Toxin_YhaV: Toxin wit 50.8 18 0.00038 28.2 2.8 31 197-229 107-137 (140)
426 COG0735 Fur Fe2+/Zn2+ uptake r 50.7 88 0.0019 25.0 7.0 64 75-139 8-71 (145)
427 PF14689 SPOB_a: Sensor_kinase 50.6 18 0.00039 23.9 2.6 27 366-392 24-50 (62)
428 PF10255 Paf67: RNA polymerase 50.2 1.1E+02 0.0023 29.5 8.5 56 157-212 125-191 (404)
429 COG4976 Predicted methyltransf 50.2 50 0.0011 28.6 5.6 58 342-399 4-63 (287)
430 COG2909 MalT ATP-dependent tra 49.9 3.5E+02 0.0076 28.9 25.3 215 165-390 426-684 (894)
431 PF11846 DUF3366: Domain of un 49.7 68 0.0015 27.1 6.7 55 65-119 120-175 (193)
432 cd08819 CARD_MDA5_2 Caspase ac 49.6 95 0.0021 22.2 7.0 38 267-305 48-85 (88)
433 PF14669 Asp_Glu_race_2: Putat 49.6 1.6E+02 0.0035 24.9 11.9 82 334-423 108-205 (233)
434 COG0790 FOG: TPR repeat, SEL1 47.1 2.2E+02 0.0048 25.8 16.7 145 271-430 93-268 (292)
435 cd08326 CARD_CASP9 Caspase act 47.0 64 0.0014 23.0 5.0 33 168-200 44-76 (84)
436 KOG0686 COP9 signalosome, subu 46.6 2.7E+02 0.0059 26.7 13.4 98 257-359 152-255 (466)
437 KOG0376 Serine-threonine phosp 46.0 49 0.0011 32.0 5.5 97 294-403 12-110 (476)
438 COG5187 RPN7 26S proteasome re 45.9 1.1E+02 0.0024 27.6 7.2 63 333-397 115-187 (412)
439 KOG2471 TPR repeat-containing 45.7 3.1E+02 0.0067 27.1 15.7 110 295-412 249-382 (696)
440 PF10255 Paf67: RNA polymerase 45.1 82 0.0018 30.2 6.9 59 334-392 123-191 (404)
441 PF07575 Nucleopor_Nup85: Nup8 44.6 3.6E+02 0.0079 27.5 12.1 76 170-247 390-465 (566)
442 PF04190 DUF410: Protein of un 44.4 2.4E+02 0.0051 25.3 17.5 50 254-303 89-138 (260)
443 PF10366 Vps39_1: Vacuolar sor 44.1 1.4E+02 0.003 22.5 7.8 40 169-213 28-67 (108)
444 COG0735 Fur Fe2+/Zn2+ uptake r 44.1 1.3E+02 0.0029 24.0 7.1 43 227-269 27-69 (145)
445 KOG0889 Histone acetyltransfer 43.6 8E+02 0.017 31.3 19.2 61 16-81 2450-2510(3550)
446 TIGR01503 MthylAspMut_E methyl 43.5 1.2E+02 0.0027 29.4 7.7 45 103-150 69-113 (480)
447 PRK10564 maltose regulon perip 43.5 33 0.00073 31.0 3.9 30 56-85 260-289 (303)
448 cd08326 CARD_CASP9 Caspase act 42.9 1.2E+02 0.0026 21.6 5.9 33 269-301 44-76 (84)
449 PF14689 SPOB_a: Sensor_kinase 42.1 49 0.0011 21.8 3.7 28 186-213 24-51 (62)
450 KOG0403 Neoplastic transformat 41.4 3.4E+02 0.0075 26.4 19.0 58 336-393 512-571 (645)
451 KOG4521 Nuclear pore complex, 40.6 5.6E+02 0.012 28.5 13.1 150 263-421 928-1124(1480)
452 PF07720 TPR_3: Tetratricopept 40.4 73 0.0016 18.3 4.7 17 371-387 7-23 (36)
453 PF00244 14-3-3: 14-3-3 protei 40.0 2.6E+02 0.0057 24.6 10.9 59 190-248 6-65 (236)
454 PRK02287 hypothetical protein; 39.6 2.2E+02 0.0047 23.6 7.9 62 332-393 106-168 (171)
455 KOG4814 Uncharacterized conser 39.0 1.9E+02 0.0042 29.4 8.4 85 344-428 365-457 (872)
456 PF11817 Foie-gras_1: Foie gra 38.9 1.9E+02 0.0042 25.6 8.1 23 190-212 183-205 (247)
457 PHA03100 ankyrin repeat protei 38.8 4E+02 0.0086 26.3 13.5 146 26-181 38-200 (480)
458 PF13934 ELYS: Nuclear pore co 38.7 2.7E+02 0.0058 24.3 13.2 71 292-377 114-184 (226)
459 cd00280 TRFH Telomeric Repeat 38.5 2.4E+02 0.0052 23.7 8.8 116 21-139 15-159 (200)
460 COG5108 RPO41 Mitochondrial DN 38.2 2.4E+02 0.0053 28.9 8.9 68 128-195 33-113 (1117)
461 PRK09857 putative transposase; 38.1 2.3E+02 0.0051 25.9 8.6 64 368-431 209-272 (292)
462 KOG0292 Vesicle coat complex C 38.1 2.5E+02 0.0055 29.9 9.3 130 28-181 651-780 (1202)
463 PF09670 Cas_Cas02710: CRISPR- 37.9 3.7E+02 0.0081 25.8 12.6 57 192-249 138-198 (379)
464 PRK11639 zinc uptake transcrip 37.5 1.5E+02 0.0032 24.5 6.7 36 234-269 39-74 (169)
465 KOG2582 COP9 signalosome, subu 37.0 3.7E+02 0.0079 25.4 13.0 51 232-282 289-343 (422)
466 COG0292 RplT Ribosomal protein 37.0 40 0.00087 25.1 2.7 57 3-62 56-112 (118)
467 KOG1308 Hsp70-interacting prot 36.9 37 0.00081 31.3 3.1 117 297-427 125-243 (377)
468 PF08424 NRDE-2: NRDE-2, neces 36.8 3.5E+02 0.0076 25.1 15.2 116 302-430 47-185 (321)
469 PF12926 MOZART2: Mitotic-spin 36.8 1.2E+02 0.0025 21.7 4.8 42 5-48 28-69 (88)
470 PRK14700 recombination factor 36.7 3.4E+02 0.0073 24.9 9.7 50 185-234 123-175 (300)
471 KOG1839 Uncharacterized protei 36.6 6.5E+02 0.014 28.3 12.4 163 230-400 942-1139(1236)
472 smart00638 LPD_N Lipoprotein N 36.5 4.8E+02 0.01 26.7 23.1 63 18-84 308-371 (574)
473 COG2912 Uncharacterized conser 36.4 1.2E+02 0.0026 27.1 6.1 57 371-427 187-243 (269)
474 PF12796 Ank_2: Ankyrin repeat 36.0 1.2E+02 0.0025 21.3 5.3 85 27-123 1-87 (89)
475 cd08812 CARD_RIG-I_like Caspas 35.8 1.6E+02 0.0036 21.1 5.8 33 36-68 48-81 (88)
476 cd08332 CARD_CASP2 Caspase act 35.8 1E+02 0.0022 22.3 4.7 32 168-199 48-79 (90)
477 PF09454 Vps23_core: Vps23 cor 35.6 99 0.0021 20.7 4.3 31 220-250 8-38 (65)
478 PF10475 DUF2450: Protein of u 35.4 2.2E+02 0.0048 26.0 8.1 23 363-385 195-217 (291)
479 KOG2063 Vacuolar assembly/sort 35.1 6.1E+02 0.013 27.4 18.7 143 68-231 493-637 (877)
480 PRK11639 zinc uptake transcrip 34.8 2E+02 0.0043 23.8 7.0 58 81-139 19-76 (169)
481 PRK13342 recombination factor 34.0 4.5E+02 0.0097 25.5 15.3 101 202-320 154-264 (413)
482 PF11838 ERAP1_C: ERAP1-like C 33.7 3.8E+02 0.0083 24.6 10.5 110 2-113 147-262 (324)
483 PHA02875 ankyrin repeat protei 33.5 4.5E+02 0.0097 25.3 16.8 78 99-180 10-91 (413)
484 PF11768 DUF3312: Protein of u 33.2 5.2E+02 0.011 26.0 11.2 62 258-319 411-477 (545)
485 KOG3824 Huntingtin interacting 33.0 74 0.0016 28.9 4.3 60 344-403 127-188 (472)
486 PF09670 Cas_Cas02710: CRISPR- 33.0 4.5E+02 0.0097 25.2 10.8 53 97-150 140-196 (379)
487 PF06957 COPI_C: Coatomer (COP 32.7 1.2E+02 0.0027 29.2 6.1 40 360-399 293-334 (422)
488 COG4259 Uncharacterized protei 32.3 1.3E+02 0.0029 22.1 4.7 27 397-423 70-96 (121)
489 KOG2581 26S proteasome regulat 31.7 4.8E+02 0.01 25.1 10.1 143 251-401 120-283 (493)
490 PF00356 LacI: Bacterial regul 31.7 50 0.0011 20.2 2.2 17 464-480 30-46 (46)
491 PF11817 Foie-gras_1: Foie gra 31.6 2.7E+02 0.0058 24.7 7.8 74 351-424 163-243 (247)
492 PRK14962 DNA polymerase III su 31.3 5.4E+02 0.012 25.6 10.5 26 197-222 255-280 (472)
493 KOG2659 LisH motif-containing 30.7 3.7E+02 0.0079 23.5 11.7 97 288-393 28-131 (228)
494 PRK09462 fur ferric uptake reg 30.5 2.7E+02 0.0059 22.2 7.0 60 79-139 8-68 (148)
495 PRK13800 putative oxidoreducta 30.2 7.7E+02 0.017 27.1 26.6 245 17-281 632-878 (897)
496 cd07153 Fur_like Ferric uptake 29.9 1.3E+02 0.0029 22.6 5.0 44 191-234 6-49 (116)
497 PF02184 HAT: HAT (Half-A-TPR) 29.8 1.1E+02 0.0024 17.1 3.2 22 69-92 3-24 (32)
498 PF08967 DUF1884: Domain of un 29.8 67 0.0014 22.5 2.7 25 458-482 7-31 (85)
499 KOG0991 Replication factor C, 29.7 3.9E+02 0.0085 23.6 11.7 48 172-220 226-273 (333)
500 cd07153 Fur_like Ferric uptake 29.5 1.3E+02 0.0028 22.7 4.9 42 60-101 7-48 (116)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.2e-75 Score=605.59 Aligned_cols=482 Identities=34% Similarity=0.588 Sum_probs=452.1
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
+.++++|..+.+.|+.||+.++|+|+.+|+++ |+++.|.++|+.|+.+|+.+||++|.+|++.|++++|+++|++|.+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcC--CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161 (498)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 161 (498)
.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|..||..+|+.+|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888777
Q ss_pred HHHHccCCHHHHHHHHhhC-------------------------------------------------------------
Q 010881 162 NGYAKSGQISIARQMFDKM------------------------------------------------------------- 180 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~------------------------------------------------------------- 180 (498)
.+|++.|++++|.++|++|
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 7776666666555555554
Q ss_pred ---------CCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881 181 ---------PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251 (498)
Q Consensus 181 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 251 (498)
.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 445666777777777777777777888888875 5899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc----------
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---------- 321 (498)
.++..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 899999999999999999999999999999999999998
Q ss_pred --------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010881 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET 387 (498)
Q Consensus 322 --------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 387 (498)
.|...+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++..
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 566688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHH
Q 010881 388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG 467 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 467 (498)
.+++.+++|+++..|..|+++|...|+|++|.++.+.|+++|+++.||+||+++++.+|.|..++.+||+.++|+..|+.
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~ 759 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCCcccccc
Q 010881 468 IDKHLKSLCFFDDGNEVATE 487 (498)
Q Consensus 468 ~~~~~~~~g~~~~~~~~~~~ 487 (498)
+.++|++.||.||+..|++.
T Consensus 760 l~~~~~~~g~~~~~~~~~~~ 779 (857)
T PLN03077 760 FYEKMKASGLAGSESSSMDE 779 (857)
T ss_pred HHHHHHhCCcCCCcchhccc
Confidence 99999999999999988753
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-73 Score=581.46 Aligned_cols=482 Identities=27% Similarity=0.414 Sum_probs=397.0
Q ss_pred chHhHHHHHHHHhC-CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC----CCCcchHHHHHHHHHhCCCchHHHHHH
Q 010881 2 KQIKQIQSHLTVSG-TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ----YRTTFIWNTMIRGFAEKNEPIKAFALY 76 (498)
Q Consensus 2 ~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~ 76 (498)
++|.+++..|...+ +.||..+|+.++.+|++. ++++.|.+++..|. .||+.+||.++.+|++.|+++.|.++|
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 181 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 35666777776654 667777777777777777 77777777777664 467777777777777777777777777
Q ss_pred HHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhcc----CCC
Q 010881 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS----VNR 152 (498)
Q Consensus 77 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~ 152 (498)
++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.+.|..+.+.+++..+ ..+
T Consensus 182 ~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 182 DEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred hcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 77753 6777777777777777777777777777777777777777777777777777777777766543 356
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 232 (498)
|..+|++|+.+|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010881 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (498)
.|++++|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|+.++|+++|++|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCc------------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 010881 313 QLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368 (498)
Q Consensus 313 ~~~~~~p~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 368 (498)
.+.|+.||. .|.+.+|+.|+..+|+.++++|++.|++++|.+++++|++.|+..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 777777776 44455788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEE
Q 010881 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF 448 (498)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 448 (498)
++|+.+|..+|+++.|..+++++.+.+|++...|..++++|++.|+|++|.++++.|+++|+.+.||++|+++++.+|.|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCccccccCC
Q 010881 449 VSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG 489 (498)
Q Consensus 449 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 489 (498)
++++.+||...+++..+.++..+|++.||.||+..|++...
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 99999999999999999999999999999999999987654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-60 Score=498.04 Aligned_cols=421 Identities=31% Similarity=0.500 Sum_probs=366.1
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
+.+.++++.+.+.|..++..++|+|+.+|++. |+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|..
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~--g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~ 180 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF--GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC--CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161 (498)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 161 (498)
.|+.||..||+.++.+|+..+++..+.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|++|..+|..+||++|
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li 260 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776666666655
Q ss_pred HHH----------------------------------------------------------------------HccCCHH
Q 010881 162 NGY----------------------------------------------------------------------AKSGQIS 171 (498)
Q Consensus 162 ~~~----------------------------------------------------------------------~~~~~~~ 171 (498)
.+| ++.|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 554 4556666
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251 (498)
Q Consensus 172 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 251 (498)
+|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+
T Consensus 341 ~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 67777777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc----------
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---------- 321 (498)
.|+..++++|+++|+++|++++|.++|++|.++|+.+|+++|.+|++.|+.++|+.+|++|.. ++.||.
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 588886
Q ss_pred -------------hhhhhhCC------------------------------CCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881 322 -------------SMSEIYGI------------------------------EPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358 (498)
Q Consensus 322 -------------~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (498)
....+.|+ .||..+|+.+|.+|++.|+.++|.++|++
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111222 56677777777777777777777777777
Q ss_pred C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC-CCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 359 M---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE-RS-LDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 359 ~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
| ++.||..||+.++.+|.+.|++++|.++|+.|.+ .+ .++..+|..++.+|.+.|++++|.+++++|
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 7 6777777777777777777777777777777773 22 223456777777777777777777777776
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.7e-60 Score=483.99 Aligned_cols=419 Identities=15% Similarity=0.222 Sum_probs=392.6
Q ss_pred chHhHHHHHHHHhCC-CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 010881 2 KQIKQIQSHLTVSGT-LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML 80 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 80 (498)
+.|.++++.|.+.|+ .|+..+++.++..|.+. |.+++|..+|+.|..||..+|+.+|.+|++.|+++.|.++|++|.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 578999999999995 57888889999999999 999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC----CCChhh
Q 010881 81 RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV----NRDVIS 156 (498)
Q Consensus 81 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~ 156 (498)
+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 689999
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCC------CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMP------EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 230 (498)
|+.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999999999999994 4799999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHH
Q 010881 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAI 306 (498)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~ 306 (498)
++.|++++|..+|++|.+.|+.||..+|+.++++|++.|++++|.++|+.|.+ ||..+|++||.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999974 78999999999999999999999
Q ss_pred HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 010881 307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDL 383 (498)
Q Consensus 307 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~ 383 (498)
++|++|.+.|+ .||..+|+.||.+|++.|++++|.++|++| ++.||..+|+.++.+|++.|+++.
T Consensus 705 ~lf~eM~~~g~------------~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 705 ELYEDIKSIKL------------RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHHHHHHcCC------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999998855 455899999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHhHh----cC-------------------CcchHHHHHHhhhhCCccccC
Q 010881 384 GKETVESLVERSL-DHEGVHVLLSNIYAS----TE-------------------QWNGVEKVRRGMEDNEVRKVP 434 (498)
Q Consensus 384 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g-------------------~~~~a~~~~~~m~~~~~~~~~ 434 (498)
|.+++++|.+.+. ++..+|..++..|.+ .+ ..++|..+|++|.+.|+.|+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 9999999999874 345567777655331 11 235799999999999998664
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-59 Score=478.42 Aligned_cols=448 Identities=15% Similarity=0.195 Sum_probs=396.3
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ----YRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 78 (498)
.|..++..|.. ||..+|+.++.+|++. |+++.|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++
T Consensus 424 eAl~lf~~M~~----pd~~Tyn~LL~a~~k~--g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e 497 (1060)
T PLN03218 424 EAFRFAKLIRN----PTLSTFNMLMSVCASS--QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497 (1060)
T ss_pred HHHHHHHHcCC----CCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 45566666653 9999999999999999 99999999999987 58999999999999999999999999999
Q ss_pred hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC------CC
Q 010881 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV------NR 152 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~ 152 (498)
|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .|
T Consensus 498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P 577 (1060)
T PLN03218 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999884 57
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKMPE----KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT 228 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 228 (498)
|..+|+++|.+|++.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999974 5779999999999999999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHH
Q 010881 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP----NRDVFAYTSLISGLANHDQSAS 304 (498)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~ 304 (498)
+|++.|++++|.++++.|.+.|+.||..+|++++.+|++.|++++|.++|+.|. .||..+|++||.+|++.|++++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999995 5899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----
Q 010881 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRV---- 377 (498)
Q Consensus 305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~---- 377 (498)
|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.+++.+| ++.||..+|+.++..|.+
T Consensus 738 Alelf~eM~~~Gi~P------------d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~k 805 (1060)
T PLN03218 738 ALEVLSEMKRLGLCP------------NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEK 805 (1060)
T ss_pred HHHHHHHHHHcCCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999986554 5899999999999999999999999999 899999999999876542
Q ss_pred c-------------------CCHHHHHHHHHHHHhcC-CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCcee
Q 010881 378 H-------------------GDVDLGKETVESLVERS-LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437 (498)
Q Consensus 378 ~-------------------g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 437 (498)
. +..+.|..+|++|++.+ .++..+|..++.++...+..+.+..+++.|...+..++....
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y 885 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL 885 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence 1 23467999999999988 345568888888888888888888888888766544322211
Q ss_pred EEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCc
Q 010881 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN 482 (498)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 482 (498)
. .++.+...++ ++ --.+++.|.+.|+.|+..
T Consensus 886 ~--------~Li~g~~~~~--~~----A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 886 S--------TLVDGFGEYD--PR----AFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred H--------HHHHhhccCh--HH----HHHHHHHHHHcCCCCCcc
Confidence 1 1111221111 22 334579999999999985
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-55 Score=445.48 Aligned_cols=428 Identities=20% Similarity=0.307 Sum_probs=387.6
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
+.++++|..|.+.|+.||+.++|.|+.+|+++ |+++.|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC--CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161 (498)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 161 (498)
.|+.||..||+.++.+|+..|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||++|
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 010881 162 NGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 237 (498)
.+|++.|+.++|.++|++|. .||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999994 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881 238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAIELFMRMQ 313 (498)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (498)
+|.++|+.|. .||..+||++|.+|++.|+.++|.++|++|.+ ||..||++++.+|++.|..++|.++|+.|.
T Consensus 378 ~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999986 57899999999999999999999999999864 899999999999999999999999999998
Q ss_pred H-cCCCCCc--------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881 314 L-EGVVPNE--------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA 370 (498)
Q Consensus 314 ~-~~~~p~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 370 (498)
+ .|+.|+. .+.+..++.|+..+|+.|+.+|...|+++.|..+++++ +..| +..+|..
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 6 5899985 44555678999999999999999999999999999998 7777 4779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHH---HHhH--------hcCCcchHHHHHHhhhhCCccccCc
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLD--HEGVHVLLS---NIYA--------STEQWNGVEKVRRGMEDNEVRKVPG 435 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~---~~~~--------~~g~~~~a~~~~~~m~~~~~~~~~~ 435 (498)
|+..|++.|++++|.++++.|.+.+.. +...|..+. ..+. ...-++...++..+|.+.|..++..
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999987632 111111110 0000 0011344567788888888765443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.6e-26 Score=244.32 Aligned_cols=408 Identities=12% Similarity=0.035 Sum_probs=309.4
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 78 (498)
+.|.+++..+.+. .++++.++..+..+|... |++++|.+.|+++. ..+...+..+...+...|++++|...|++
T Consensus 448 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 448 DKALAAAKKLEKK-QPDNASLHNLLGAIYLGK--GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3566677776654 355778888889999998 99999999998764 33556777788888889999999999999
Q ss_pred hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC---CCChh
Q 010881 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV---NRDVI 155 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~ 155 (498)
+.+.+ +.+..++..+...+...|+.++|..+++++.+.++ .+...+..++..+...|++++|.++++++. +.+..
T Consensus 525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 88743 23566778888888888999999999888887763 356667778888888888888888888765 33567
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232 (498)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 232 (498)
.|..+..++.+.|++++|...|+++.+ .+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+..
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 788888888888888888888887753 256677788888888888888888888887753 3346677778888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFM 310 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (498)
.|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.. |+..++..++.++...|++++|...++
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888887765 56667777788888888888888888887654 455667777778888888888888888
Q ss_pred HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PDNYVLGALLNACRVHGDVDLGKETV 388 (498)
Q Consensus 311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (498)
++.+. .|+ +...+..+...|...|++++|...|+++ ... ++..+++.+...+...|+ .+|+..+
T Consensus 761 ~~l~~--~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 761 AWLKT--HPN-----------DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred HHHHh--CCC-----------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 87764 233 4667777777777777777777777776 223 356667777777777777 6677777
Q ss_pred HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
+++++..|+++..+..++.++...|++++|.++++++.+.+.
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777777777777777777777766554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=6.5e-26 Score=242.41 Aligned_cols=404 Identities=12% Similarity=0.036 Sum_probs=332.7
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQM 79 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 79 (498)
.|.+.+..+.+.... +......++..|.+. |+++.|..+++.+. ..+...|+.+...+...|++++|...|+++
T Consensus 415 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 415 EAIADLETAAQLDPE-LGRADLLLILSYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred HHHHHHHHHHhhCCc-chhhHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456667777666533 334556677888888 99999999998876 346678889999999999999999999998
Q ss_pred HHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhh
Q 010881 80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVIS 156 (498)
Q Consensus 80 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 156 (498)
.+.. +.+...+..+...+...|++++|...++.+.+..+ .+..++..+...+.+.|+.++|...++++.. .+...
T Consensus 492 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 569 (899)
T TIGR02917 492 LSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569 (899)
T ss_pred HhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhH
Confidence 8743 22455677788888899999999999999988764 3677888889999999999999999988743 35567
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 233 (498)
+..++..+.+.|++++|..+++.+.. .+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 78888999999999999999988863 367788899999999999999999999998753 34566777888888899
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFM 310 (498)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (498)
|++++|..+++.+.+.. +.+..++..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999988765 66678889999999999999999999998875 356678888888999999999999999
Q ss_pred HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETV 388 (498)
Q Consensus 311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (498)
++...+ |+..++..++.++.+.|++++|.+.++++ ..+.+...+..+...|...|++++|.+.|
T Consensus 728 ~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 728 KALKRA--------------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HHHhhC--------------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 988752 33467778899999999999999999888 33347788888888999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+++++..|+++.++..++.++...|+ .+|+.+++++.+.
T Consensus 794 ~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 794 RTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999999998889999999999999 8899999888765
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2e-22 Score=185.58 Aligned_cols=378 Identities=13% Similarity=0.096 Sum_probs=305.1
Q ss_pred ChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH-H
Q 010881 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF-I 94 (498)
Q Consensus 19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l 94 (498)
-..+|+.+.+++... |++++|...++.+.+ ..+..|..+..++..+|+.+.|.+.|.+.++ +.|+.....+ +
T Consensus 115 ~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 346788888888888 999999998887653 3567888888899999999999999988887 5576554433 3
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCC---hhhHHHHHHHHHccCCHH
Q 010881 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD---VISWTSLINGYAKSGQIS 171 (498)
Q Consensus 95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~ 171 (498)
-..+...|++++|...+.+.++..+. =...|+.|...+...|++..|+..|++.++-| ..+|..|...|...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 33445578888898888888877542 34567788888888999999999998877554 367888888898899999
Q ss_pred HHHHHHhhCC--CC-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010881 172 IARQMFDKMP--EK-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAFLGALDQGRWIHAYVD 247 (498)
Q Consensus 172 ~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (498)
.|...|.+.. .| ..+.+..+...|...|.++-|+..|++..+. .|+ ...|+.+..++-..|++.+|.+.+....
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9988887765 33 4667788888888999999999999998874 555 3578889999999999999999998888
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh
Q 010881 248 RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324 (498)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 324 (498)
... +......+.|...|...|.+++|..+|....+ | -...++.|...|-++|++++|+..|++.++ +.|+
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~---- 420 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT---- 420 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch----
Confidence 775 55567788899999999999999999988775 3 345788888999999999999999998876 5555
Q ss_pred hhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
-...|+.+...|-..|+.+.|.+.+.+. .++| -...++.|...|...|++.+|+.-|+.++.+.|+.+.+|
T Consensus 421 -------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 421 -------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred -------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 3788899999999999999999999887 7777 466788899999999999999999999999999999898
Q ss_pred HHHHHHhHhcCCcch
Q 010881 403 VLLSNIYASTEQWNG 417 (498)
Q Consensus 403 ~~l~~~~~~~g~~~~ 417 (498)
-.++.++---.+|.+
T Consensus 494 cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 494 CNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHhcccc
Confidence 888877766666655
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.7e-22 Score=182.15 Aligned_cols=357 Identities=16% Similarity=0.169 Sum_probs=311.8
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh-HHHHHH
Q 010881 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLL 130 (498)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 130 (498)
..+|..+...+-..|+++.|+.+|+.|.+ ++| ....|..+..++...|+.+.|.+.|.+.++.. |+.. ..+.+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 45788899999999999999999999998 445 57789999999999999999999999999865 4433 344566
Q ss_pred HHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCCHhHH
Q 010881 131 HLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYAKSGQISIARQMFDKMPEKN---AVSWSAMINGYVQVDLFKEA 204 (498)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 204 (498)
......|++.+|...|.+.++ | -..+|+.|...+-.+|+.-.|+..|++..+-| ...|-.|...|...+.++.|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 667778999999999988664 3 24689999999999999999999999987543 56899999999999999999
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010881 205 LEHFNYMQLCGFRPNH-AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283 (498)
Q Consensus 205 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 283 (498)
+..|.+.... .|+. ..+..+...|...|.++.|+..+++..+.. +.-...|+.|..++-..|++.+|.+.|.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998874 5654 567777778889999999999999998875 44578999999999999999999999998775
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881 284 ---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM- 359 (498)
Q Consensus 284 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 359 (498)
....+.+.|...|...|.+++|..+|....+ +.|. -....+.|...|...|++++|+..|++.
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~-----------~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPE-----------FAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChh-----------hhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 3567889999999999999999999999887 3444 3678899999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 360 PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 360 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
.+.|+ ...|+.+...|...|+.+.|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-++...+..
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 88896 67899999999999999999999999999999999999999999999999999999999987654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=8e-20 Score=196.83 Aligned_cols=376 Identities=12% Similarity=0.059 Sum_probs=269.9
Q ss_pred HHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc---hHH--------
Q 010881 27 IGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY---TFS-------- 92 (498)
Q Consensus 27 ~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~-------- 92 (498)
...+... |++++|...|++... .+...+..+..++.+.|++++|+..|++..+.. |+.. .+.
T Consensus 276 G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 276 GLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhH
Confidence 4556667 999999999988652 367788899999999999999999999998743 4322 121
Q ss_pred ----HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHH
Q 010881 93 ----FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYA 165 (498)
Q Consensus 93 ----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~ 165 (498)
.....+.+.|++++|...++++++..+ .+...+..+..++...|++++|.+.|++..+ | +...+..+...+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 123456788999999999999999864 3566777889999999999999999998763 2 4456666666664
Q ss_pred ccCCHHHHHHHHhhCCCCC------------hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 010881 166 KSGQISIARQMFDKMPEKN------------AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAF 232 (498)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 232 (498)
.++.++|...++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..+...+..
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 457888988888765321 223455667788889999999999998875 443 4556677788888
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Ch---------hHHHHHHHHHHhc
Q 010881 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR----DV---------FAYTSLISGLANH 299 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~ 299 (498)
.|++++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999887654 445555555555667778888888888877532 11 1122344556677
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010881 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRV 377 (498)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 377 (498)
|+.++|..+++. .|+ +...+..+...+.+.|++++|+..|++. ...| +...+..++..+..
T Consensus 587 G~~~eA~~~l~~------~p~-----------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 587 GKEAEAEALLRQ------QPP-----------STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred CCHHHHHHHHHh------CCC-----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 777777777661 222 3455666777777777777777777776 4444 56667777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
.|++++|++.++.+.+..|+++..+..++.++...|++++|.++++++.+.
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 777777777777777777777766777777777777777777777776654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.9e-20 Score=186.52 Aligned_cols=245 Identities=12% Similarity=0.044 Sum_probs=205.3
Q ss_pred CCHHHHHHHHhhCCC-----C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHH
Q 010881 168 GQISIARQMFDKMPE-----K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAFLGALDQGR 240 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~ 240 (498)
+++++|.+.|+...+ | ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 578899999987763 2 4556888888999999999999999999875 455 457788888889999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317 (498)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 317 (498)
..++.+.+.. +.+..++..+...|...|++++|...|++..+ .+...+..+...+.+.|++++|+..|++....
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 9999998875 66788999999999999999999999998865 35667888888999999999999999999874
Q ss_pred CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHH
Q 010881 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDN-Y-------VLGALLNACRVHGDVDLGKETV 388 (498)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~ 388 (498)
.|+ +...++.+..++...|++++|...|++. .+.|+. . .++.....+...|++++|.+++
T Consensus 463 ~P~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 463 FPE-----------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred CCC-----------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344 5788999999999999999999999987 444421 1 1222222344469999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+++++.+|++...+..++.++.+.|++++|++.|++..+.
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999888999999999999999999999998764
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.4e-19 Score=195.06 Aligned_cols=404 Identities=12% Similarity=-0.002 Sum_probs=314.5
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--CCc---chHHH------------HHHHHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RTT---FIWNT------------MIRGFA 64 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~ 64 (498)
++|...+..+++.. +.++.++..|..+|.+. |++++|+..|++..+ |+. ..|.. ....+.
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQ--GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677777777764 33778889999999999 999999999998653 321 12222 234677
Q ss_pred hCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHH
Q 010881 65 EKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR 143 (498)
Q Consensus 65 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 143 (498)
+.|++++|+..|+++.+. .| +...+..+...+...|++++|.+.|+++++..+. +...+..+...|. .++.++|.
T Consensus 363 ~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 363 KANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHH
Confidence 899999999999999984 34 4556777888999999999999999999987643 4556667777775 46789999
Q ss_pred HHhhccCCCC------------hhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881 144 KLFDMSVNRD------------VISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHF 208 (498)
Q Consensus 144 ~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~ 208 (498)
.+++.+.... ...+..+...+...|++++|++.|++..+ | +...+..+...|.+.|++++|...|
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988765321 22345567778899999999999998864 3 5667788899999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHh
Q 010881 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI---------ILGTAIIDMYAKCGCIETACSVFD 279 (498)
Q Consensus 209 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~ 279 (498)
+++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+...|+.++|..+++
T Consensus 519 ~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9998753 223334444444567789999999998876433222221 123355677889999999999999
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 280 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
.- ..+...+..+...+.+.|++++|+..|++..+. .|+ +...+..++.+|...|++++|++.++..
T Consensus 598 ~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~-----------~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 598 QQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPG-----------NADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 43 345567788899999999999999999999884 455 5889999999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 360 -PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE------GVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 360 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
...| +...+..+..++...|++++|.+++++++...|+++ ..+..++.++...|++++|...|++...
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555 566677788889999999999999999998776543 2556678999999999999999998864
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.4e-20 Score=178.29 Aligned_cols=300 Identities=12% Similarity=0.044 Sum_probs=202.2
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 010881 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177 (498)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (498)
+...|+++.|...++++.+.++ .+..++..+...+...|++++|..+++.+.......-
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-------------------- 103 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR-------------------- 103 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH--------------------
Confidence 4455566666666666665432 2334455555555555555555555544332100000
Q ss_pred hhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---
Q 010881 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD--- 254 (498)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 254 (498)
......+..++..|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.+-.+.
T Consensus 104 ----~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 104 ----EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 0001345556666666666666666666666542 33455666666666666666666666666665432211
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881 255 -IILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330 (498)
Q Consensus 255 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 330 (498)
...+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|..+++++...+ |+
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~---------- 246 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PE---------- 246 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hh----------
Confidence 12345667777888888888888887764 2 45577778888999999999999999988742 21
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
....++..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~ 325 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYH 325 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHh
Confidence 12466788999999999999999999998 5568777778889999999999999999999999988876 444444444
Q ss_pred Hh---cCCcchHHHHHHhhhhCCccccCce
Q 010881 410 AS---TEQWNGVEKVRRGMEDNEVRKVPGC 436 (498)
Q Consensus 410 ~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 436 (498)
.. .|+.+++..++++|.++++.++|..
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 43 5689999999999999999888874
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.7e-18 Score=177.02 Aligned_cols=403 Identities=10% Similarity=0.029 Sum_probs=307.1
Q ss_pred CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHH
Q 010881 17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFS 92 (498)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~ 92 (498)
+-++....-.+.+.... |+.++|.+++..... .+...+..+...+...|++++|..+|++..+. .| +...+.
T Consensus 12 ~~~~~~~~d~~~ia~~~--g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~ 87 (765)
T PRK10049 12 ALSNNQIADWLQIALWA--GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQR 87 (765)
T ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 44556667777888888 999999999998763 23445889999999999999999999999883 35 455677
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHHccCC
Q 010881 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYAKSGQ 169 (498)
Q Consensus 93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 169 (498)
.+...+...|++++|...++++++..+. +.. +..+..++...|+.++|...+++... | +...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 7888899999999999999999988543 445 88888999999999999999998764 3 55666778888889999
Q ss_pred HHHHHHHHhhCCCCChh--------HHHHHHHHHHh-----CCCH---hHHHHHHHHHHHc-CCCCCHH-HHH----HHH
Q 010881 170 ISIARQMFDKMPEKNAV--------SWSAMINGYVQ-----VDLF---KEALEHFNYMQLC-GFRPNHA-GIV----GAL 227 (498)
Q Consensus 170 ~~~A~~~~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ll 227 (498)
.+.|++.++.... ++. ....++..... .+++ ++|+..++.+.+. ...|+.. .+. ..+
T Consensus 166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 9999999998775 211 12223333222 2234 7789999998854 2233322 111 113
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHhc
Q 010881 228 TACAFLGALDQGRWIHAYVDRNGIE-LDIILGTAIIDMYAKCGCIETACSVFDSMPNRD-------VFAYTSLISGLANH 299 (498)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~ 299 (498)
.++...|++++|...|+.+.+.+-+ |+ .....+..+|...|++++|...|+++...+ ......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 4556779999999999999887622 22 122335778999999999999999876422 23456667788999
Q ss_pred CChHHHHHHHHHHHHcCCCCCchh-hhhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010881 300 DQSASAIELFMRMQLEGVVPNESM-SEIYGIEPG---VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLN 373 (498)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~~p~~~~-~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 373 (498)
|++++|..+++++.... |.... .....-.|+ ...+..+...+...|++++|+++++++ ...| +...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~--P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNS--PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcC--CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999998752 21100 000011233 245667888999999999999999998 4445 6788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
.+...|++++|++.++++++..|++..++..++..+...|++++|..+++++.+..
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999997643
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=9.1e-19 Score=176.73 Aligned_cols=347 Identities=10% Similarity=-0.048 Sum_probs=279.0
Q ss_pred CChhHHHHHhhhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 010881 36 GDLSHGYRLFVCLQYR------TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI 109 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 109 (498)
.+++.---.|..-++. +..-.-.++..+.++|+++.|..+++........ +...+..++.+....|+++.|..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHH
Confidence 6777766666655532 3334556677888999999999999999885432 34455666677778999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhCC--CC-
Q 010881 110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYAKSGQISIARQMFDKMP--EK- 183 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~- 183 (498)
.++++.+..+. +...+..+...+...|++++|...+++... | +...+..+...+...|++++|...++.+. .|
T Consensus 98 ~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 98 VVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 99999998643 566788889999999999999999998763 3 56788899999999999999999998764 23
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
+...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 177 RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGL 254 (656)
T ss_pred CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 33344333 3578899999999999998876544455555666778889999999999999998875 667788889999
Q ss_pred HHHhcCCHHH----HHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881 264 MYAKCGCIET----ACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336 (498)
Q Consensus 264 ~~~~~g~~~~----A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~ 336 (498)
+|...|++++ |...|+++.. | +...+..+...+...|++++|...+++.... .|+ +...+
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~-----------~~~a~ 321 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPD-----------LPYVR 321 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------CHHHH
Confidence 9999999986 7888988764 3 5678999999999999999999999999874 455 46778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 337 GCLVDLLGRAGMLEAAKKVVREM-PIEPDNYV-LGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
..+..++...|++++|...++++ ...|+... +..+..++...|+.++|...|+++++..|++.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88999999999999999999988 55675433 44456778999999999999999999998854
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.1e-19 Score=178.55 Aligned_cols=351 Identities=13% Similarity=0.008 Sum_probs=280.9
Q ss_pred HhCCCchHHHHHHHHhHHC--CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh
Q 010881 64 AEKNEPIKAFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141 (498)
Q Consensus 64 ~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 141 (498)
.++.+++.---.|....++ .-.-+......++..+.+.|+++.|..+++..+...+.+ ...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 4455666554455544332 111234445667788899999999999999999987664 4445556677778999999
Q ss_pred HHHHhhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881 142 ARKLFDMSVN--R-DVISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215 (498)
Q Consensus 142 a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 215 (498)
|.+.|+++.. | +...+..+...+.+.|++++|...|++... | +...+..+...+...|++++|...++.+....
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 9999998763 3 567888899999999999999999998864 3 56788889999999999999999999887754
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHH
Q 010881 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSL 292 (498)
Q Consensus 216 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 292 (498)
|+.......+..+...|++++|...++.+.+..-.++......+..++...|++++|...|+++.. .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333222222344788999999999999987764334445556667889999999999999998765 356788889
Q ss_pred HHHHHhcCChHH----HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 010881 293 ISGLANHDQSAS----AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNY 366 (498)
Q Consensus 293 i~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 366 (498)
...+...|++++ |...|++..+. .|+ +...+..+...+...|++++|...+++. ...| +..
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~-----------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSD-----------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999986 89999999874 455 5889999999999999999999999998 5556 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.+..+..++...|++++|+..++++.+.+|++...+..++.++...|++++|...|++..+...
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 7778889999999999999999999999999876677788899999999999999999876543
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.1e-17 Score=172.81 Aligned_cols=241 Identities=12% Similarity=0.045 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 010881 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLA 297 (498)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 297 (498)
...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 3344444444443 56666666555555442 3433333333444566666666666665543 23334445555556
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCc----------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 010881 298 NHDQSASAIELFMRMQLEGVVPNE----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~p~~----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 355 (498)
+.|+.++|...+++..+.. |+. .+.+.....|+...|..+..++.+.|++++|...
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666655432 222 1111223456778888999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcccc
Q 010881 356 VREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV 433 (498)
Q Consensus 356 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 433 (498)
+++. ...| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+....
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-- 709 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-- 709 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--
Confidence 9988 5566 56777788888999999999999999999999999999999999999999999999999888765421
Q ss_pred CceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcC-cccCC
Q 010881 434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLC-FFDDG 481 (498)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~~~ 481 (498)
.. ......++.......+.+..+.+...- +.|+.
T Consensus 710 ~a--------------~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 710 QA--------------LITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred Cc--------------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 11 001123455555556666666666554 33433
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.6e-19 Score=171.23 Aligned_cols=288 Identities=17% Similarity=0.130 Sum_probs=215.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYAT 135 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 135 (498)
...+...|++++|+..|+++.+.+ | +..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999853 4 455788889999999999999999999987542222 1234444555555
Q ss_pred CCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
.|+++ .|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.
T Consensus 120 ~g~~~-------------------------------~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 120 AGLLD-------------------------------RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred CCCHH-------------------------------HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 55554 45455444432 345567777777777888888888888777
Q ss_pred HcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-
Q 010881 213 LCGFRPNH----AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD- 285 (498)
Q Consensus 213 ~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~- 285 (498)
+.+..++. ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+ |+
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 65433322 134455666677888888888888887664 44566777888889999999999999988774 33
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 286 -VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 286 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
..+++.++.+|...|+.++|...++++.+. .| +...+..++..+.+.|++++|..+++++ ...|
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p------------~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP------------GADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC------------CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 346788899999999999999999999875 23 3456688999999999999999999987 6679
Q ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 010881 364 DNYVLGALLNACRV---HGDVDLGKETVESLVERS 395 (498)
Q Consensus 364 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 395 (498)
+..+++.++..+.. .|+.+++..+++++++..
T Consensus 314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 99999988887664 558999999999988733
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.6e-17 Score=168.24 Aligned_cols=364 Identities=12% Similarity=-0.015 Sum_probs=276.9
Q ss_pred HHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHH
Q 010881 23 VGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACA 99 (498)
Q Consensus 23 ~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 99 (498)
+......|.+. |+++.|...|++.. .|+...|..+..+|.+.|++++|+..+++..+. .| +...|..+..++.
T Consensus 130 ~k~~G~~~~~~--~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRN--KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34556677788 99999999998865 467778888888999999999999999999884 45 4557888888899
Q ss_pred ccCCcHHHHHHHHHHHHhCCC-----------------------------CchhHHHHH---------------------
Q 010881 100 DTSCLFVGLICHAQVIRLGWE-----------------------------SYDFVLNGL--------------------- 129 (498)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~-----------------------------~~~~~~~~l--------------------- 129 (498)
..|++++|...+..+...+.. ++...+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999887655443221110 000000000
Q ss_pred ---------HHHH------HhCCChhhHHHHhhccCCC------ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-Ch
Q 010881 130 ---------LHLY------ATCNCMDPARKLFDMSVNR------DVISWTSLINGYAKSGQISIARQMFDKMPE--K-NA 185 (498)
Q Consensus 130 ---------~~~~------~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~ 185 (498)
+..+ ...+++++|.+.|++.... +...|+.+...+...|++++|+..|++..+ | +.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 0000 1235788888988876532 345688888889999999999999998864 3 35
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (498)
..|..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...|+...+.. +.+...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 678888999999999999999999998763 3346788888889999999999999999998875 56677888899999
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-HHHHHHHH
Q 010881 266 AKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-QHYGCLVD 341 (498)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-~~~~~l~~ 341 (498)
.+.|++++|...|+.... .+...|+.+...+...|++++|...|++..... |+. .....+. ..++....
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~-----~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KET-----KPMYMNVLPLINKALA 516 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--Ccc-----ccccccHHHHHHHHHH
Confidence 999999999999998764 457789999999999999999999999988742 321 0011111 12233333
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 342 LLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
.+...|++++|.+++++. ...| +...+..+...+...|++++|+..|+++.++.+...
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 445579999999999997 5556 456788899999999999999999999999877644
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.1e-17 Score=168.30 Aligned_cols=377 Identities=11% Similarity=0.020 Sum_probs=286.3
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQM 79 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 79 (498)
+|.+++....... +.+...+..+..++.+. |++++|..+++... ..+...+..+...+...|++++|+..++++
T Consensus 33 ~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 33 EVITVYNRYRVHM-QLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4556666666522 34455688899999999 99999999999853 445677888889999999999999999999
Q ss_pred HHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChh----
Q 010881 80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI---- 155 (498)
Q Consensus 80 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---- 155 (498)
.+. .|+...+..+..++...|+++.|...++++++..+. +...+..+..++...+..+.|.+.++.... ++.
T Consensus 110 l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~ 185 (765)
T PRK10049 110 VSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRD 185 (765)
T ss_pred HHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHH
Confidence 884 343333778888899999999999999999998755 555666688888899999999999987765 211
Q ss_pred ----hHHHHHHHHH-----ccCCH---HHHHHHHhhCCC-----CChh-HHH----HHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 156 ----SWTSLINGYA-----KSGQI---SIARQMFDKMPE-----KNAV-SWS----AMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 156 ----~~~~li~~~~-----~~~~~---~~A~~~~~~~~~-----~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
....++.... ..+++ ++|++.++.+.+ |+.. .+. ..+..+...|++++|+..|+++.+
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 1222222222 12234 677777777662 2211 111 113345677999999999999998
Q ss_pred cCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---
Q 010881 214 CGFR-PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD----IILGTAIIDMYAKCGCIETACSVFDSMPNRD--- 285 (498)
Q Consensus 214 ~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 285 (498)
.+.. |+. .-..+...+...|++++|...++.+.+.. +.+ ......+..++...|++++|...++.+...+
T Consensus 266 ~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 266 EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence 7632 433 22235678899999999999999987653 212 2455667778899999999999999876521
Q ss_pred ---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881 286 ---------------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350 (498)
Q Consensus 286 ---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 350 (498)
...+..+...+...|+.++|+.+++++... .|+ +...+..++..+...|+++
T Consensus 344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~-----------n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APG-----------NQGLRIDYASVLQARGWPR 410 (765)
T ss_pred EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHhcCCHH
Confidence 124456777889999999999999999874 455 5789999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881 351 AAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 351 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
+|++.+++. ...|+ ...+..++..+...|++++|+.+++++++..|+++.+
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999998 66674 6677777778999999999999999999999999843
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.6e-15 Score=153.87 Aligned_cols=201 Identities=12% Similarity=0.098 Sum_probs=164.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhHHHHHHHH
Q 010881 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---------DVFAYTSLISG 295 (498)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~ 295 (498)
-.+-++...+++.+++..++.+...+.+....+-.++.++|...++.++|..+|+.+..+ +......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 345567788999999999999999887766778889999999999999999999988542 22335678889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCchhhhhh-----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 010881 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIY-----GIEPG-VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYV 367 (498)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 367 (498)
|...+++++|..+++++.+. .|- ....+ ...|| ...+..++..+...|++.+|++.++++ ...| |...
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~--~p~--~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l 452 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQ--TPY--QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNL 452 (822)
T ss_pred HHhcccHHHHHHHHHHHHhc--CCc--EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999873 221 00001 12233 344555678889999999999999999 4455 8888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
...+...+...|.+.+|++.++.+..+.|++..+....+.++...|+|++|..+.+...+..
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999887776543
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.7e-14 Score=149.36 Aligned_cols=381 Identities=12% Similarity=0.045 Sum_probs=280.4
Q ss_pred HHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHH--HHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC
Q 010881 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG--FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103 (498)
Q Consensus 26 l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 103 (498)
++..+.+. ++++.|.++.+. ...+. . ..++. ....+...++...+..|.+.. +-+......+--.....|+
T Consensus 319 ~~~~~~~~--~~~~~~~~~~~~-~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 319 TLPVLLKE--GQYDAAQKLLAT-LPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHhc--cHHHHHHHHhcC-CCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccc
Confidence 35666777 788877766442 22222 1 23322 223466677777777777631 1244444444455677888
Q ss_pred cHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhCCChh---hHHHH-------------------------hhccC---
Q 010881 104 LFVGLICHAQVIRL-G-WESYDFVLNGLLHLYATCNCMD---PARKL-------------------------FDMSV--- 150 (498)
Q Consensus 104 ~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~---~a~~~-------------------------~~~~~--- 150 (498)
.++|.++++..... + -.++.....-++..|.+.+..+ ++..+ +....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 99999998888763 1 1234445557778887776632 23222 11111
Q ss_pred CC--ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881 151 NR--DVISWTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226 (498)
Q Consensus 151 ~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 226 (498)
.+ +...|..+..++.. ++.++|...|.+... |+......+...+...|++++|...|+++... .|+...+..+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 12 45667777777776 788889997776653 44333333344556899999999999998654 4555566677
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHH
Q 010881 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSAS 304 (498)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~ 304 (498)
...+...|+.++|...++...+.. +.+...+..+.......|++++|...+++..+ |+...|..+...+.+.|+.++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHH
Confidence 778889999999999999998765 44444444444555567999999999998875 677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 010881 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVD 382 (498)
Q Consensus 305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 382 (498)
|...+++.... .|+ +...++.+..++...|++++|+..+++. ...| +...+..+..++...|+++
T Consensus 628 A~~~l~~AL~l--~Pd-----------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 628 AVSDLRAALEL--EPN-----------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999884 555 5788999999999999999999999998 5566 6788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 383 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
+|+..++++++..|++..+....+....+..+++.|.+-+++.-..++
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999999999998877765444
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.2e-14 Score=141.72 Aligned_cols=392 Identities=13% Similarity=0.068 Sum_probs=233.0
Q ss_pred CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCC------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch
Q 010881 17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT------TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT 90 (498)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 90 (498)
..+|.+.+.|.+.|-.. |+++.+..+.+.+...+ ..+|-.+.++|-..|++++|...|.+..+. .|+.++
T Consensus 267 ~~nP~~l~~LAn~fyfK--~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~ 342 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK--KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFV 342 (1018)
T ss_pred CCCcHHHHHHHHHHhhc--ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcc
Confidence 34777888888888777 88888888887765432 345777888888888999998888887763 355444
Q ss_pred --HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhhHHHHhhccCCC---ChhhHHHHH
Q 010881 91 --FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN----CMDPARKLFDMSVNR---DVISWTSLI 161 (498)
Q Consensus 91 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~li 161 (498)
+--|...+...|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++.+...+ |...|..+.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34466778888888888888888888753 35566666666676664 567777777766544 555666666
Q ss_pred HHHHccCCH------HHHHHHHhhC-CCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc---CCCCCH------HHHHH
Q 010881 162 NGYAKSGQI------SIARQMFDKM-PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC---GFRPNH------AGIVG 225 (498)
Q Consensus 162 ~~~~~~~~~------~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~ 225 (498)
..+....-+ ..|..++..- ....+...|.+...+...|++++|...|+..... ...++. .+-..
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 655443322 2333333222 2346677888888888889999998888887654 122332 22223
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCh
Q 010881 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQS 302 (498)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 302 (498)
+....-..++.+.|...|..+.+.. +--+..|..+.-..-..+...+|...++.+.. .++..++.+...|.....+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 4444456678888888888887763 22233333343223334677788888877664 5667777777778777777
Q ss_pred HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHh------------hcCCHHHHHHHHHhC-CCCC-CHHHH
Q 010881 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG------------RAGMLEAAKKVVREM-PIEP-DNYVL 368 (498)
Q Consensus 303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~-~~~p-~~~~~ 368 (498)
..|..-|......-..- +|..+.-.|.+.|. ..+..++|+++|.+. ...| |...-
T Consensus 581 ~~a~k~f~~i~~~~~~~-----------~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTK-----------TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred cccccHHHHHHhhhccC-----------CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 77777666665532111 22333333333222 112334444444443 2223 33333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
+-+.-.++..|++..|..+|.++.+...+.+.+|..++++|..+|+|-.|+++|+..
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443333334444444444444444444444443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=9.2e-14 Score=141.16 Aligned_cols=379 Identities=11% Similarity=0.036 Sum_probs=287.3
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCC-cchHHHH--HHHHHhCCCchHHHHHHHHh
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-TFIWNTM--IRGFAEKNEPIKAFALYKQM 79 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l--i~~~~~~~~~~~A~~~~~~m 79 (498)
.|...+..+++......+.++ .++..+... |+.++|+..+++...|+ ...+..+ ...+...|++++|+++|+++
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHHHhhCccchhhHH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566777777766533223344 888999999 99999999999988664 3444444 45778889999999999999
Q ss_pred HHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-Chh
Q 010881 80 LRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVI 155 (498)
Q Consensus 80 ~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~ 155 (498)
.+.. | +...+..++..+...++.++|+..++.+.... |+...+..++..+...++..+|.+.++++.. | +..
T Consensus 129 L~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 129 LKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 8843 4 45667777888899999999999999998875 3444455555555556677669999988763 3 445
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhCC------------------------------------------------C-----
Q 010881 156 SWTSLINGYAKSGQISIARQMFDKMP------------------------------------------------E----- 182 (498)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~------------------------------------------------~----- 182 (498)
.+..+..++.+.|-...|.++..+-+ .
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~ 284 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD 284 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC
Confidence 55666666555554444444433222 1
Q ss_pred CCh-h----HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----CC
Q 010881 183 KNA-V----SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-----IE 252 (498)
Q Consensus 183 ~~~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~ 252 (498)
|.. . ...-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|..++..+.... .+
T Consensus 285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~ 364 (822)
T PRK14574 285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS 364 (822)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC
Confidence 111 1 1123355778899999999999999999877677788899999999999999999999987643 12
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-------------DV---FAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
++......|.-+|...+++++|..+++.+.+ | |. ..+..++..+...|+..+|++.++++..
T Consensus 365 ~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~ 444 (822)
T PRK14574 365 DDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS 444 (822)
T ss_pred cchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444467899999999999999999998875 1 11 2344567778899999999999999977
Q ss_pred cCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881 315 EGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLV 392 (498)
Q Consensus 315 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 392 (498)
. .|. |......+.+.+...|.+.+|++.++.. ...| +..+....+.++...+++++|..+.+.+.
T Consensus 445 ~--aP~-----------n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 445 T--APA-----------NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred h--CCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4 444 7899999999999999999999999877 5667 56677778888899999999999999999
Q ss_pred hcCCCCchH
Q 010881 393 ERSLDHEGV 401 (498)
Q Consensus 393 ~~~~~~~~~ 401 (498)
+..|++..+
T Consensus 512 ~~~Pe~~~~ 520 (822)
T PRK14574 512 SRSPEDIPS 520 (822)
T ss_pred hhCCCchhH
Confidence 999998843
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.2e-13 Score=122.86 Aligned_cols=275 Identities=12% Similarity=0.072 Sum_probs=151.8
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHH-H-----------------------HhhhcCCCCcchHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGY-R-----------------------LFVCLQYRTTFIWN 57 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~-~-----------------------~~~~~~~~~~~~~~ 57 (498)
+.+--++..|...|.+.++.+--.|++..+-....++.-|+ + ++-+...++..+|.
T Consensus 132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s 211 (625)
T KOG4422|consen 132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVS 211 (625)
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHH
Confidence 34455788888999888887766665443222002222221 1 22222334567888
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 010881 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137 (498)
Q Consensus 58 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 137 (498)
.+|.++|+--..+.|.++|++......+.+..+||.+|.+-+-. ..++++.+|......||..|+|+++.+.++.|
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg 287 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFG 287 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence 88888888888888888888888777777888888888764432 23778888888888888888888888888888
Q ss_pred ChhhHHHHhh----cc----CCCChhhHHHHHHHHHccCCHHH-HHHHHhhCCC-----------C-ChhHHHHHHHHHH
Q 010881 138 CMDPARKLFD----MS----VNRDVISWTSLINGYAKSGQISI-ARQMFDKMPE-----------K-NAVSWSAMINGYV 196 (498)
Q Consensus 138 ~~~~a~~~~~----~~----~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~-----------~-~~~~~~~li~~~~ 196 (498)
+++.|...+- +| ++|...+|..+|..+++.++..+ |..++.++.. | +...|..-|..|.
T Consensus 288 ~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 288 KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence 8777654432 22 34555555555555555554422 2222222210 1 2233344444444
Q ss_pred hCCCHhHHHHHHHHHHHcC-----CCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881 197 QVDLFKEALEHFNYMQLCG-----FRPN---HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268 (498)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~g-----~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (498)
+..+.+-|.++-.-+. .| +.|+ ..-|..+....|.....+.....|..|.-.-.-|+..+...++++....
T Consensus 368 ~l~d~~LA~~v~~ll~-tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLK-TGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HhhhHHHHHHHHHHHH-cCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 4444444444433222 11 1111 1123333444444444444444444444444444444444445544444
Q ss_pred CCHHHHHHHHhhC
Q 010881 269 GCIETACSVFDSM 281 (498)
Q Consensus 269 g~~~~A~~~~~~~ 281 (498)
|.++-.-+++..+
T Consensus 447 ~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 447 NRLEVIPRIWKDS 459 (625)
T ss_pred CcchhHHHHHHHH
Confidence 4444444444443
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.5e-14 Score=130.78 Aligned_cols=353 Identities=14% Similarity=0.021 Sum_probs=252.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 010881 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA 134 (498)
Q Consensus 56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (498)
+.....-|.++|++++|++.|.+.++ ..|| +..|.....+|...|+|+++.+.-...++..+. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44455678889999999999999998 6688 777888889999999999998887777776533 2334455556666
Q ss_pred hCCChhhHHHH----------------------hhc---------cC---C---CChhhHHHHHHHHH------------
Q 010881 135 TCNCMDPARKL----------------------FDM---------SV---N---RDVISWTSLINGYA------------ 165 (498)
Q Consensus 135 ~~g~~~~a~~~----------------------~~~---------~~---~---~~~~~~~~li~~~~------------ 165 (498)
..|++++|+.= +.. +. . |+....++....+-
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 66666665331 110 11 1 11111222222110
Q ss_pred -------------ccC---CHHHHHHHHhhCC-------CCC---------hhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 166 -------------KSG---QISIARQMFDKMP-------EKN---------AVSWSAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 166 -------------~~~---~~~~A~~~~~~~~-------~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
..+ .+..|...+.+-. ..+ ..+...-...+.-.|+.-.|..-|+....
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 001 1222222221110 011 11222222344556888899999999988
Q ss_pred cCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHH
Q 010881 214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYT 290 (498)
Q Consensus 214 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 290 (498)
....++. .|.-+...|....+.++....|....+.+ +-++.+|..-.+.+.-.+++++|..-|++... .++..|-
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 6544443 27777788899999999999999999887 77888998888888999999999999998876 3556677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----
Q 010881 291 SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----- 364 (498)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----- 364 (498)
-+..+..+.+++++++..|++..++ .| ..+++|+.....+...+++++|.+.|+.. .+.|.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk--FP-----------~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK--FP-----------NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CC-----------CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 7777778899999999999999885 33 36899999999999999999999999987 44443
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 365 ----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 365 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
+.+.-.++- +.-.+++..|..+++++++++|....+|..|+....+.|+.++|+++|++-..
T Consensus 500 v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222222 22348999999999999999999999999999999999999999999988754
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.2e-12 Score=128.10 Aligned_cols=405 Identities=12% Similarity=0.072 Sum_probs=203.3
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL--PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL 129 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (498)
|++..+.|...|...|+++.++.+...+...... .-...|-.+.++|-..|++++|...|.+..+....-....+-.|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3344444444444444444444444444332100 01122333444444444444444444444433222112223334
Q ss_pred HHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccC----CHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCC
Q 010881 130 LHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSG----QISIARQMFDKMPEK---NAVSWSAMINGYVQVD 199 (498)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 199 (498)
...|.+.|+++.+...|+.... .+..+...|...|+..+ ..+.|..++.+..++ |+..|-.+...+.. +
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-T 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-c
Confidence 4444444444444444444321 12233333333333332 233344444433332 23333333333322 2
Q ss_pred CHhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCChh------HHHHHHHHHH
Q 010881 200 LFKEALEHFNYM----QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN---GIELDII------LGTAIIDMYA 266 (498)
Q Consensus 200 ~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~ 266 (498)
++..++.+|... ...+-.+.....|.+.......|+++.|...|...... ...++.. +--.+..++-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 222224444332 22333344555555555555555555555555554433 1112211 1222333444
Q ss_pred hcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881 267 KCGCIETACSVFDSMPNRDVF---AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 343 (498)
..++.+.|...|..+.+..+. .|-.++..-...+...+|..+++..+... ..++..++.+...+
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-------------~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-------------SSNPNARSLLGNLH 574 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-------------cCCcHHHHHHHHHH
Confidence 445555555555555542221 22222211122355556666666665431 33566777778888
Q ss_pred hhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881 344 GRAGMLEAAKKVVREM----PIEPDNYVLGALLNACRV------------HGDVDLGKETVESLVERSLDHEGVHVLLSN 407 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 407 (498)
.+...+..|..-|... ...+|..+.-.|...|.. .+..++|+++|.++++.+|.+..+-+.++.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI 654 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence 8888888888755444 334777777777775543 246789999999999999999888889999
Q ss_pred HhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCc
Q 010881 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN 482 (498)
Q Consensus 408 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 482 (498)
+++..|++.+|..+|.+.++.... .++ .|+-+.+.. -+..+.-..+..-...|++.+.+-+.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~-~~d-v~lNlah~~----------~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSD-FED-VWLNLAHCY----------VEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhh-CCc-eeeeHHHHH----------HHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 999999999999999999886542 122 365554211 112222333333456677777544444
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=6.1e-13 Score=129.13 Aligned_cols=331 Identities=14% Similarity=0.076 Sum_probs=246.2
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhh---ccCCCChhhHHHHHHHHHccCCHHH
Q 010881 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD---MSVNRDVISWTSLINGYAKSGQISI 172 (498)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~ 172 (498)
......|++++|..++.++++..+. +...|..|..+|-..|+.+++...+- .+.+.|..-|..+.....+.|+++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3344459999999999999988743 67788889999999999999887763 3445577889999999999999999
Q ss_pred HHHHHhhCCCCC---hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCChHHHHHHHHH
Q 010881 173 ARQMFDKMPEKN---AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA----GIVGALTACAFLGALDQGRWIHAY 245 (498)
Q Consensus 173 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 245 (498)
|.-.|.+..+.+ ...+.--+..|-+.|+...|...|.++.+...+.|.. +...+++.+...++-+.|.+.+..
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999887543 3333344567888999999999999998864322222 233445566667777888888877
Q ss_pred HHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----C---------------------------ChhHHHHHH
Q 010881 246 VDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPN----R---------------------------DVFAYTSLI 293 (498)
Q Consensus 246 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---------------------------~~~~~~~li 293 (498)
.... +-..+...++.++..|.+...++.|......... + +... -.+.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 6652 2245667788888888888888888876655432 1 1112 1222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH
Q 010881 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGA 370 (498)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ 370 (498)
-++.+....+....+........+.|.+ +...|.-+.++|...|++.+|+.+|..+ +..-+...|..
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d----------~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSD----------DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhh----------hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 3444444445555555555555544432 6788999999999999999999999998 22335779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeE
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 438 (498)
+..+|...|.+++|.+.|++++...|++..+-..|+..+.+.|+.++|.+.+..+..-+....+++.|
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999999999998886434333344433
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.4e-15 Score=138.75 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (498)
.|..+...+...++++.|...|+++...+.. +...+..++.. ...+++++|..++....+. .++...+...+..+.
T Consensus 46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~ 121 (280)
T PF13429_consen 46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYY 121 (280)
T ss_dssp ----------------------------------------------------------------------------H-HH
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHH
Confidence 3334444445556666666666666554321 33334444444 4556666666665544333 244555666777777
Q ss_pred hcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881 267 KCGCIETACSVFDSMP-----NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD 341 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 341 (498)
..++++++.++++.+. ..+...|..+...+.+.|+.++|+..+++.++. .|+ |......++.
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~-----------~~~~~~~l~~ 188 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPD-----------DPDARNALAW 188 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHH
Confidence 7788877777777643 246667888888888999999999999999885 444 5788889999
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881 342 LLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419 (498)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (498)
.+...|+.+++.++++.. ....|+..+..+..+|...|+.++|+.+++++.+..|+++.....++.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999988888777 223466678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 010881 420 KVRRGME 426 (498)
Q Consensus 420 ~~~~~m~ 426 (498)
+++++..
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9987664
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=6.6e-13 Score=118.31 Aligned_cols=348 Identities=14% Similarity=0.104 Sum_probs=249.1
Q ss_pred CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchH
Q 010881 16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ----YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTF 91 (498)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 91 (498)
.+-+..++..+|...++- ...+.|++++.+-. +-+..+||.+|.+-.-. .-.++..+|.+..+.||..||
T Consensus 203 ~PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred cCCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhH
Confidence 456778999999999999 89999999998865 34778899998765433 227899999999999999999
Q ss_pred HHHHHHHHccCCcHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh-HHHHhhccC--------C----CCh
Q 010881 92 SFILRACADTSCLFV----GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP-ARKLFDMSV--------N----RDV 154 (498)
Q Consensus 92 ~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~--------~----~~~ 154 (498)
|+++.+..+.|+++. |.+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++..+. + .|.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 45788899999999999999999999998888754 333333221 1 255
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881 155 ISWTSLINGYAKSGQISIARQMFDKMPE--------K---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223 (498)
Q Consensus 155 ~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 223 (498)
..|...+..|.+..+.+.|.++-.-+.. + ...-|..+....|+....+.-...|+.|+-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 6678888888899999998888655442 1 2334667778888899999999999999988888999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhcC
Q 010881 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF---AYTSLISGLANHD 300 (498)
Q Consensus 224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~ 300 (498)
..++.+....+.++-..++|..++..|..-+......++..+++..- .|+.. -+.....-|+.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aa-- 502 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAA-- 502 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHH--
Confidence 99999999999999999999999988855444444444444443320 11111 11111111110
Q ss_pred ChHHH-HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHH
Q 010881 301 QSASA-IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNYVLGALL 372 (498)
Q Consensus 301 ~~~~a-~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~ 372 (498)
++.++ ...-.+|.... .+....+...-.+.+.|..++|.+++.-+ +..|......-++
T Consensus 503 d~~e~~e~~~~R~r~~~--------------~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQD--------------WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHhhHHHHHhcc--------------CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 11111 11222333322 23456777777788888888888877655 4445544455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 373 NACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
..-...++...|..+++-+.+.+.+
T Consensus 569 d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCch
Confidence 6777778888888888888776643
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=8.8e-13 Score=125.85 Aligned_cols=245 Identities=12% Similarity=-0.003 Sum_probs=148.5
Q ss_pred HccCCHHHHHHHHhhCCCC--ChhHHH--HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 010881 165 AKSGQISIARQMFDKMPEK--NAVSWS--AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240 (498)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 240 (498)
.+.|+++.|.+.|.++.+. +..... .....+...|++++|...++++.+.. +-+......+...+...|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4556666666666555432 221111 22345556666666666666665543 223344555556666666666666
Q ss_pred HHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881 241 WIHAYVDRNGIELDI-------ILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFM 310 (498)
Q Consensus 241 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (498)
.++..+.+.+..++. .+|..++.......+.+...++++.+++ .++.....+..++...|+.++|..+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666655433211 1233334434444555666666666653 366677777777888888888888887
Q ss_pred HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETV 388 (498)
Q Consensus 311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (498)
+..+. .| +... .++.+....++.+++.+..++. ...| |+..+..+...|...+++++|.+.|
T Consensus 288 ~~l~~--~~------------~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 288 DGLKR--QY------------DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred HHHhc--CC------------CHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77663 11 2211 1233334557778888777776 4445 4556667777788888888888888
Q ss_pred HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
+.+++..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 352 e~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 352 RAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888877764 466788888888888888888776543
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.9e-12 Score=116.62 Aligned_cols=244 Identities=13% Similarity=0.073 Sum_probs=176.7
Q ss_pred HccCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881 165 AKSGQISIARQMFDKMPEK------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238 (498)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 238 (498)
-...|+++|+.+|+++.+. |..+|..++ |++..+-. +.++.+-.-.--+--..|..++.+-|+-.++.+.
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEK 348 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEK 348 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHH
Confidence 3445566666666665532 445555544 33332211 2222221111112233577777777778888888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLE 315 (498)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (498)
|..+|++..+.+ +....+|+.+.+-|....+...|...++.+.+ .|-..|-.|.++|.-.+...=|+-.|++...
T Consensus 349 Av~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~- 426 (559)
T KOG1155|consen 349 AVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE- 426 (559)
T ss_pred HHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-
Confidence 888888888776 66677888888889999999999999988775 4677888899999999999999999999877
Q ss_pred CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 316 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
++|+ |...|.+|.++|.+.++.++|+..|.+. .-..+...+..|...|.+.++.++|...|++.++
T Consensus 427 -~kPn-----------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 427 -LKPN-----------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -cCCC-----------chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4666 7899999999999999999999999988 3244678888999999999999999999988887
Q ss_pred c-------CCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 394 R-------SLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 394 ~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
. +|....+...|+.-+.+.+++++|..+.....
T Consensus 495 ~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 495 VSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 2 23333344568888889999999988765443
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.2e-13 Score=129.80 Aligned_cols=274 Identities=12% Similarity=-0.014 Sum_probs=209.2
Q ss_pred ChhhHHHHhhccCCC--C-hhhHHHHHHHHHccCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881 138 CMDPARKLFDMSVNR--D-VISWTSLINGYAKSGQISIARQMFDKMPE------KNAVSWSAMINGYVQVDLFKEALEHF 208 (498)
Q Consensus 138 ~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (498)
+..+|...|...... | ..+..-+..+|...+++++|+++|+.+.+ .+...|.+.+-.+-+. -++.++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 345677777664322 2 23445567778888888888888887764 2566677666543221 222222
Q ss_pred HH-HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 010881 209 NY-MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF 287 (498)
Q Consensus 209 ~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 287 (498)
.+ +... -+-...+|..+.++|+-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22 2222 24456788888888888899999999998888765 447788888888888899999999999998886665
Q ss_pred HHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 288 AYT---SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 288 ~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
.|+ -|...|.++++++.|+-.|++..+ +.|. +.+....+...+.+.|+.++|+++++++ .+.|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~-----------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPS-----------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCcc-----------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 554 467789999999999999999876 3444 6788888899999999999999999998 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
|+..--..+..+...+++++|+..++++.+.-|++..+|..++.+|.+.|+.+.|+.-|--+.+.+.
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5555555667778889999999999999999999999999999999999999999998877765443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=7.5e-13 Score=118.76 Aligned_cols=363 Identities=13% Similarity=0.061 Sum_probs=232.8
Q ss_pred CChhHHHHHhhhcC--CCC------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHH
Q 010881 36 GDLSHGYRLFVCLQ--YRT------TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107 (498)
Q Consensus 36 g~~~~A~~~~~~~~--~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 107 (498)
..+..|.+.+.-.. -|+ +...+.+.-.+.+.|+++.|+..|+...+ ..|+..+-..|+-++...|+-++.
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekm 328 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKM 328 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHH
Confidence 55666666654322 111 22344444567778888888888888776 447766655556566667888888
Q ss_pred HHHHHHHHHhCCCC------------chhHHHHHH-----HHHHhCCC--hhhHHHHhhcc----CCCChhh---H----
Q 010881 108 LICHAQVIRLGWES------------YDFVLNGLL-----HLYATCNC--MDPARKLFDMS----VNRDVIS---W---- 157 (498)
Q Consensus 108 ~~~~~~~~~~~~~~------------~~~~~~~l~-----~~~~~~g~--~~~a~~~~~~~----~~~~~~~---~---- 157 (498)
.+.|..|+.....+ +....+.-+ .-.-+.+. .++++-.--++ +.|+-.. |
T Consensus 329 keaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~ 408 (840)
T KOG2003|consen 329 KEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLES 408 (840)
T ss_pred HHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHH
Confidence 88888887643222 222222222 11111111 11111111112 2222110 1
Q ss_pred ------HH--------HHHHHHccCCHHHHHHHHhhCCCCChhH-----------------------------------H
Q 010881 158 ------TS--------LINGYAKSGQISIARQMFDKMPEKNAVS-----------------------------------W 188 (498)
Q Consensus 158 ------~~--------li~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------~ 188 (498)
.. -...+.+.|+++.|+++++-..+.|..+ |
T Consensus 409 lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry 488 (840)
T KOG2003|consen 409 LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY 488 (840)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence 00 1123678899999998887665432111 1
Q ss_pred HHH-----HHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 189 SAM-----INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 189 ~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
|.- .+.....|++++|...|++.+...-.-....|++-+ .+-..|++++|...|-.+...- ..+..+.-.+.+
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qian 566 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIAN 566 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 110 011123577788888888877654333333333322 3456678888887776654431 335666667777
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881 264 MYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340 (498)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 340 (498)
.|....+...|++++.+... .|+.....|...|-+.|+-..|.+.+-.--+ -++.+..+..-|.
T Consensus 567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-------------yfp~nie~iewl~ 633 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-------------YFPCNIETIEWLA 633 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-------------ccCcchHHHHHHH
Confidence 78888888888888776553 4777788888888888888888777655322 1233789999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881 341 DLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNAC-RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415 (498)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (498)
..|....-+++|+.+|++. -+.|+..-|..++..| .+.|++.+|.++|+.+.+.-|.+......|++++...|..
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999999998 6789999999988766 6689999999999999999999999999999998888763
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=1.1e-11 Score=120.54 Aligned_cols=341 Identities=13% Similarity=0.132 Sum_probs=263.5
Q ss_pred CChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICH 111 (498)
Q Consensus 36 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 111 (498)
|+.++|.+++.++.+ .+...|.+|...|-..|+.+++...+-.+-. +.| |...|..+.....+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999874 4678999999999999999999887765544 444 6677888888899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCCh----h----hHHHHHHHHHccCCHHHHHHHHhhCCC-
Q 010881 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV----I----SWTSLINGYAKSGQISIARQMFDKMPE- 182 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~A~~~~~~~~~- 182 (498)
.++++..++ +....---...|-+.|+...|.+.|.++.+.++ . .--.++..+...++-+.|.+.++....
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999998754 455555567889999999999999988765433 1 222345567777777889988887764
Q ss_pred ----CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHh
Q 010881 183 ----KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF---------------------------RPNHAGIVGALTACA 231 (498)
Q Consensus 183 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~p~~~~~~~ll~~~~ 231 (498)
-+...++.++..+.+...++.|......+..... .++... .-+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 2556788999999999999999999988877211 222222 12233445
Q ss_pred ccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHH
Q 010881 232 FLGALDQGRWIHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASA 305 (498)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a 305 (498)
.....+....+...+.+..+ .-+...|.-+.++|...|++..|..+|..+.. .+...|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55666666666666776663 34567889999999999999999999999886 3667899999999999999999
Q ss_pred HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----------CCCCCHHHHHHHHHH
Q 010881 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----------PIEPDNYVLGALLNA 374 (498)
Q Consensus 306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~p~~~~~~~l~~~ 374 (498)
.+.|+..+.. .|+ +...-..|...+.+.|+.++|.+.+..+ ...|+..........
T Consensus 469 ~e~y~kvl~~--~p~-----------~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 469 IEFYEKVLIL--APD-----------NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHHhc--CCC-----------chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 9999999884 555 5677778899999999999999999986 234455555555667
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010881 375 CRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~ 393 (498)
+...|+.++-......++.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 7888888876666555554
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2e-11 Score=110.38 Aligned_cols=382 Identities=10% Similarity=0.084 Sum_probs=278.9
Q ss_pred CChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch-HHHHHHHHHccCCcHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT-FSFILRACADTSCLFVGLICH 111 (498)
Q Consensus 36 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~ 111 (498)
++++.|+.+|+... ..+...|-..+..=.++..+..|..+++.... +-|-+.- |--.+..--..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 78889999999865 46777888888888999999999999999887 4454332 333344445679999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhcc--CCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC------
Q 010881 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS--VNRDVISWTSLINGYAKSGQISIARQMFDKMPEK------ 183 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------ 183 (498)
+...+ +.|+...|++.++.-.+.+.++.|..+|++. ..|++.+|.....--.++|+...|..+|+...+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 99876 5799999999999999999999999999985 4789999999888889999999999999877642
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCh---HHHHH-----HHHHHHHhCCCC
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTACAFLGAL---DQGRW-----IHAYVDRNGIEL 253 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~---~~a~~-----~~~~~~~~~~~~ 253 (498)
+...+.+....-.+...++.|.-+|+-.++. ++.+ ...|......--+-|+. ++++- -++.+.+.+ +.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 3344555555556677888999999888875 2222 22333333332334443 33331 133344444 66
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh---hHHHHHHH-----H---HHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 254 DIILGTAIIDMYAKCGCIETACSVFDSMPN--RDV---FAYTSLIS-----G---LANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~-----~---~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
|-.+|--.++.-...|+.+...++|++... |.. ..|...|- + -....+.+.+.++|+..++ +.|.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 778888888888889999999999998874 211 12222221 1 1346788899999998887 4454
Q ss_pred chhhhhhCCCCChHHHHHH----HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 321 ESMSEIYGIEPGVQHYGCL----VDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
...||..+ .....++.++..|.+++... |.-|...++...|..-.+.++++....+|++.++-+
T Consensus 399 -----------kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 399 -----------KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred -----------ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555444 33334677888888888877 888888888888888888888888888888888888
Q ss_pred CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCce
Q 010881 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC 436 (498)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 436 (498)
|.+..++...+..-...|+++.|..+|+-..+...-..|..
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 88888888888888888888888888887776544333433
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=4.5e-12 Score=121.04 Aligned_cols=280 Identities=11% Similarity=0.007 Sum_probs=216.5
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhCCChhhHHHHhhccCCC--ChhhHH--HHHHHHHccCCHHHHH
Q 010881 100 DTSCLFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNR--DVISWT--SLINGYAKSGQISIAR 174 (498)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~--~li~~~~~~~~~~~A~ 174 (498)
..|+++.|.+.+....+... ++.. +........+.|+++.|.+.+.++.+. +..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35999999987776555432 2333 333345558899999999999988754 332222 3356788999999999
Q ss_pred HHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChHHHHHHHH
Q 010881 175 QMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH-------AGIVGALTACAFLGALDQGRWIHA 244 (498)
Q Consensus 175 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 244 (498)
..++++.+ | +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998874 3 6778889999999999999999999999988755433 133333444444556667777777
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh
Q 010881 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324 (498)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 324 (498)
.+.+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.++++...+...+. .|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~---- 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGD---- 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCC----
Confidence 76544 25678889999999999999999999998877633332233444555679999999999999875 455
Q ss_pred hhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
|...+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus 327 -------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 -------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6788999999999999999999999998 778999999999999999999999999999987743
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.4e-11 Score=107.64 Aligned_cols=402 Identities=9% Similarity=0.036 Sum_probs=249.3
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--CCc-chHHHHHHHHHhCCCchHHHHHHHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RTT-FIWNTMIRGFAEKNEPIKAFALYKQ 78 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~ 78 (498)
+.|++++..++... ..+...|-..+.+=.++ ..+..|+.+++.... |-+ ..|-..+..=-..|++..|.++|+.
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45677777777666 33666666666666666 666667666665431 211 1233333333334666666666666
Q ss_pred hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC------
Q 010881 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR------ 152 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 152 (498)
-.+ ..|+...|.+.++.-.+-..++.|..+++..+-. .|++.+|--....-.++|....+..+|+..++.
T Consensus 167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 555 5566666666666666666666666666665542 355666655556566666666666666543321
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhC--------------------------------------------CC--C-Ch
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKM--------------------------------------------PE--K-NA 185 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~--------------------------------------------~~--~-~~ 185 (498)
+...+.+...--.++..++.|.-+|+-. .. | |-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 1112222222222223333333332211 11 1 44
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH--HHH----HHHHH-H---hccCChHHHHHHHHHHHHhCCCCCh
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA--GIV----GALTA-C---AFLGALDQGRWIHAYVDRNGIELDI 255 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~----~ll~~-~---~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (498)
.+|-..++.-...|+.+...++|++...+ ++|-.. .+. .-|+. | ....+.+.+.++++...+. ++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 56666677777788999999999988775 444221 111 11221 1 3457888888888888773 45555
Q ss_pred hHHHHHHHH----HHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881 256 ILGTAIIDM----YAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329 (498)
Q Consensus 256 ~~~~~l~~~----~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 329 (498)
.||.-+=-. -.+..++..|.+++..... |-..+|-..|..-.+.++++.+..+|++.++.+ |.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe--------- 469 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PE--------- 469 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hH---------
Confidence 665544333 3467788899998887764 666778888888888899999999999988852 33
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP----DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
+..+|......-...|+.+.|..+|.-.--+| -...|...|.--...|.++.|..+|+++++..+... ++...
T Consensus 470 --~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 470 --NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred --hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 67888888888888999999999998772133 344566667767788999999999999998877655 66666
Q ss_pred HHHhH-----hcC-----------CcchHHHHHHhhh
Q 010881 406 SNIYA-----STE-----------QWNGVEKVRRGME 426 (498)
Q Consensus 406 ~~~~~-----~~g-----------~~~~a~~~~~~m~ 426 (498)
+..-. ..+ ....|..+|++..
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 55433 233 3456777777664
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.9e-14 Score=129.14 Aligned_cols=216 Identities=15% Similarity=0.080 Sum_probs=86.6
Q ss_pred HHHHHHhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhH
Q 010881 129 LLHLYATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKE 203 (498)
Q Consensus 129 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 203 (498)
+.......++.+.|.+.++++... ++..+..++.. ...+++++|.+++...-+ ++...+..++..+.+.+++++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 333333444444444444444322 12223333333 344555555555544322 244455566666677777777
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881 204 ALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282 (498)
Q Consensus 204 a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 282 (498)
+..+++.+.... .+++...|..+...+.+.|+.++|...++...+.. |.|..+.+.++..+...|+.+++..+++...
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 777777765432 23445555666666667777777777777777664 4456667777777777777777666555443
Q ss_pred ---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 283 ---NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 283 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
..|...+..+..+|...|+.++|+.+|++.... .|+ |......+.+++...|+.++|.++..+.
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~-----------d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD-----------DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT------------HHHHHHHHHHHT---------------
T ss_pred HHCcCHHHHHHHHHHHhccccccccccccccccccc--ccc-----------cccccccccccccccccccccccccccc
Confidence 245666777777777777777777777777663 232 5677777777777777777777776654
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=3.2e-10 Score=106.71 Aligned_cols=362 Identities=13% Similarity=0.055 Sum_probs=241.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (498)
.+|+.-...|.+.+.++-|..+|...++ +.| +...|......--..|..+....++++++..-++ ....+-....-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence 3455555566666666667777766665 333 3444555555555566777777777777766432 34445555556
Q ss_pred HHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHH
Q 010881 133 YATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEH 207 (498)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~ 207 (498)
+...|+...|..++++..+ .+...|-+-+.......+++.|..+|.+... ++...|..-+...--.++.++|+++
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 6666777777777766542 2445666666777777777777777776653 4555555555555566777777777
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 010881 208 FNYMQLCGFRPNHA-GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--- 283 (498)
Q Consensus 208 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 283 (498)
+++.++. -|+-. .|..+.+.+-+.++.+.|...|..=.+. ++..+..|-.|.+.=-+.|.+-.|..+|++..-
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 7776664 34433 4555556666667777777666544433 355566777777777777777777777776553
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 010881 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363 (498)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 363 (498)
.|...|-..|+.-.+.|..+.|..+..+.++. .|+ +...|..-|....+.++-..+...+++.. -
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~-----------sg~LWaEaI~le~~~~rkTks~DALkkce--~ 815 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPS-----------SGLLWAEAIWLEPRPQRKTKSIDALKKCE--H 815 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc-----------cchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence 25567777777777777777777777776663 222 46667777777777777666666666653 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeE
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 438 (498)
|+.....+...+-...+++.|.+.|.+++..+|+...+|..+...+.+.|.-++-.+++++..... |.-|..|
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W 888 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELW 888 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHH
Confidence 455566667777788899999999999999999999999999999999999888888988776533 3344444
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=6.2e-10 Score=104.79 Aligned_cols=389 Identities=7% Similarity=-0.078 Sum_probs=295.2
Q ss_pred CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHH
Q 010881 17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96 (498)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 96 (498)
+.++..|.+.++. .+.+.|+.++.+..+--+.+. -|.-++++..-++.|..++++.++ .++.+...|.+-..
T Consensus 377 P~sv~LWKaAVel------E~~~darilL~rAveccp~s~-dLwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 377 PRSVRLWKAAVEL------EEPEDARILLERAVECCPQSM-DLWLALARLETYENAKKVLNKARE-IIPTDREIWITAAK 448 (913)
T ss_pred CchHHHHHHHHhc------cChHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHH
Confidence 3445555554443 555667777776553211111 123355666778889999999887 36567777877777
Q ss_pred HHHccCCcHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC----C-C-ChhhHHHHHHHHHc
Q 010881 97 ACADTSCLFVGLICHAQVI----RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV----N-R-DVISWTSLINGYAK 166 (498)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~-~-~~~~~~~li~~~~~ 166 (498)
.--..|+.+...++.++-+ ..|+..+..-|-.=...|-..|..-.+..+....+ + . --.+|+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 7777888888888776543 45777777777776777777777766666655432 1 1 23578888888999
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010881 167 SGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243 (498)
Q Consensus 167 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 243 (498)
.+.++-|..+|....+ .+...|......--..|..++...+|++.+.. ++-....+.......-..|+...|..++
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999887764 25566777766666779999999999999886 2333344555556667789999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 010881 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321 (498)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 321 (498)
..+.+.. +.+..+|-+-+.....+.+++.|..+|.+... ++...|..-+...--.++.++|.+++++.++. .|+
T Consensus 608 ~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~- 683 (913)
T KOG0495|consen 608 DQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD- 683 (913)
T ss_pred HHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc-
Confidence 9998886 66888999999999999999999999998775 66777777777777789999999999998874 343
Q ss_pred hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
-...|..+.+.+-+.++++.|...|..- ..-| ....|..|...--+.|++.+|..++++..-.+|.+.
T Consensus 684 ----------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 684 ----------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred ----------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 3677888899999999999999998876 4455 566777777777888999999999999999999999
Q ss_pred hHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
..|...+.+-.+.|..+.|..+..+..+.
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999888777654
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=3.5e-11 Score=108.26 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=106.5
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881 265 YAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD 341 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 341 (498)
+-..|++++|++.|-++.. .++...-.+...|-...+...|++++-+... +.|+ |+...+.|.+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~-----------dp~ilskl~d 600 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN-----------DPAILSKLAD 600 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC-----------CHHHHHHHHH
Confidence 3344555555555544332 3333444444445555555555555544432 3333 6888999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881 342 LLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419 (498)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (498)
.|-+.|+-..|.+.+-+- ..-| +..+..-|...|....-+++|+.+|+++--..|+.......++.++.+.|++..|.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999998886554 4444 77788778888888888999999999999899988766667777888899999999
Q ss_pred HHHHhhhhC
Q 010881 420 KVRRGMEDN 428 (498)
Q Consensus 420 ~~~~~m~~~ 428 (498)
.+++....+
T Consensus 681 d~yk~~hrk 689 (840)
T KOG2003|consen 681 DLYKDIHRK 689 (840)
T ss_pred HHHHHHHHh
Confidence 999888643
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=2.5e-11 Score=116.54 Aligned_cols=252 Identities=13% Similarity=0.063 Sum_probs=140.9
Q ss_pred HHHHccCCHHHHHHHHhhCCC--CCh--hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 010881 162 NGYAKSGQISIARQMFDKMPE--KNA--VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD 237 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 237 (498)
.+..+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 344444555555555555321 221 122223455556666666666666666543 123334555566666666666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHH---H----hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 010881 238 QGRWIHAYVDRNGIELDIILGTAIIDMY---A----KCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIE 307 (498)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 307 (498)
+|...+..+.+.+..+.......-..++ . .....+...+.++..++ .++..+..+...+...|+.++|..
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 6666666666655322221111111111 1 12223344444555443 366777777777888888888888
Q ss_pred HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCCHHH
Q 010881 308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN--YVLGALLNACRVHGDVDL 383 (498)
Q Consensus 308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~ 383 (498)
++++..+. .||+ ++..............++.+.+.+.+++. ...| |+ ....++...|.+.|++++
T Consensus 285 ~l~~~l~~--~pd~---------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 285 IIFDGLKK--LGDD---------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred HHHHHHhh--CCCc---------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence 88887774 2331 00000111222223346777777777766 3344 33 556677778888888888
Q ss_pred HHHHHH--HHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 384 GKETVE--SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 384 A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
|.+.|+ ...+..|++.. +..++..+.+.|+.++|.+++++..
T Consensus 354 A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 354 AADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888 45556676553 5588888888888888888887654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.5e-11 Score=108.64 Aligned_cols=296 Identities=15% Similarity=0.085 Sum_probs=196.3
Q ss_pred CCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHh
Q 010881 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN-AVSWSAMINGYVQ 197 (498)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 197 (498)
...|...+-...-.+.+.|..+.|+..|...+..-+..|.+-+....-..+.+.+..+.......+ ...---+..++-.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 344555555555556677888888888876665444444443333333333333332222222110 0000111222333
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC---------------------------
Q 010881 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG--------------------------- 250 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 250 (498)
....+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+..
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 33344444444444444333222222222222233344444444444444331
Q ss_pred ------CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 010881 251 ------IELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321 (498)
Q Consensus 251 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 321 (498)
-+--+.|...+.+-|.-.++.++|...|++..+- ....|+.+.+-|....+...|.+-+++.++- .|.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~- 396 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR- 396 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch-
Confidence 0223345555566677778889999999988763 4568999999999999999999999999873 333
Q ss_pred hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
|-..|-.|.++|.-.+...=|+-+|++. ..+| |...|.+|..+|.+.++.++|+..|.+++..+-.+.
T Consensus 397 ----------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 397 ----------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred ----------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 7899999999999999999999999999 7778 899999999999999999999999999999988888
Q ss_pred hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 400 GVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
..+..|+..|.+.++.++|...+++-.+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999999988765
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=4.8e-11 Score=114.61 Aligned_cols=281 Identities=13% Similarity=-0.005 Sum_probs=206.6
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--CCh--hhHHHHHHHHHccCCHHHHH
Q 010881 99 ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--RDV--ISWTSLINGYAKSGQISIAR 174 (498)
Q Consensus 99 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~A~ 174 (498)
...|+++.|.+.+....+..+.| ...+-....++...|+++.|.+.+.+..+ |+. .........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45799999999998887765332 23334556778889999999999988643 333 23344577888999999999
Q ss_pred HHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCChHHHHHHHHHHHH
Q 010881 175 QMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC---AFLGALDQGRWIHAYVDR 248 (498)
Q Consensus 175 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~ 248 (498)
..++.+.+ | +...+..+...+...|++++|.+.+..+.+.++.++......-..++ ...+..+.+...+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999874 3 66788899999999999999999999999987543332212112222 222222323334444433
Q ss_pred hC---CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 249 NG---IELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFA---YTSLISGLANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 249 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
.. .+.+...+..+...+...|+.+.|.+++++..+ ||... ...........++.+.+...+++..+. .|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCC
Confidence 32 124788899999999999999999999998876 43331 122222334457888899999888774 455
Q ss_pred chhhhhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 321 ESMSEIYGIEPGV--QHYGCLVDLLGRAGMLEAAKKVVRE--M-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 321 ~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
|. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 332 -----------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 -----------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -----------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45 6677899999999999999999994 3 6789999999999999999999999999999765
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=3.1e-11 Score=117.02 Aligned_cols=408 Identities=13% Similarity=0.052 Sum_probs=265.7
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR----TTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
.++..+...|+.|+-.+|..+|.-|+.. |+++.|- +|.-|.-+ +...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~--gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTK--GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHccc--CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 4778899999999999999999999999 9999999 88887633 5678999999999999988876
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-------hCCCC-chhH-------------HHHHHHHHHhCCChh
Q 010881 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR-------LGWES-YDFV-------------LNGLLHLYATCNCMD 140 (498)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~-~~~~-------------~~~l~~~~~~~g~~~ 140 (498)
.|...||..|+.+|...||+..-..+-+.+.. .|+.. .... -...+......|-++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 58899999999999999997663332222221 12211 1000 112233334445666
Q ss_pred hHHHHhhccCCC--ChhhHHHHHHHHHcc-CCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 010881 141 PARKLFDMSVNR--DVISWTSLINGYAKS-GQISIARQMFDKMPE-KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216 (498)
Q Consensus 141 ~a~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 216 (498)
.+.+++..++.. +. ....+++-+... ..+++-..+.....+ +++.+|..++.+-..+|+.+.|..++.+|.+.|+
T Consensus 157 qllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 666666555421 11 111123333322 334444444444444 7999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH-----------HHhhCC---
Q 010881 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS-----------VFDSMP--- 282 (498)
Q Consensus 217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~--- 282 (498)
+.+..-|..++-+ .++...+..+++-|...|+.|+..|+.-.+-.+.++|....+.. ++..+.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 9999988888866 78888889999999999999999998876666655443211110 111110
Q ss_pred -------------------C-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC---------------
Q 010881 283 -------------------N-------RDVFAYTSLISGLANHDQSASAIELFMRMQLE--GVVP--------------- 319 (498)
Q Consensus 283 -------------------~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p--------------- 319 (498)
+ ....+|...+. ...+|+-++..++-..|..- ...|
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 0 01122222222 12234444444433333211 0111
Q ss_pred --------------------------------------Cc----------------------------------------
Q 010881 320 --------------------------------------NE---------------------------------------- 321 (498)
Q Consensus 320 --------------------------------------~~---------------------------------------- 321 (498)
|.
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 11
Q ss_pred --hhhh------hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881 322 --SMSE------IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----PIEPDNYVLGALLNACRVHGDVDLGKETV 388 (498)
Q Consensus 322 --~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (498)
.+.+ .+.-..-...|..||+.+...+..+.|..+.++. ....+..-+..+.+.+.+.+....+..++
T Consensus 472 e~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 0000 0000011245677888888888888888888877 23345556777888888888899999998
Q ss_pred HHHHhcC---CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccc
Q 010881 389 ESLVERS---LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432 (498)
Q Consensus 389 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 432 (498)
.++.+.- |.....+..+.+.....|+.+...++.+-....|+..
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8887732 3233445667777788888888888888888777765
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.9e-12 Score=119.87 Aligned_cols=277 Identities=14% Similarity=0.079 Sum_probs=200.9
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC------CChhhHHHHHHHHHccCCHHH-HHH
Q 010881 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN------RDVISWTSLINGYAKSGQISI-ARQ 175 (498)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~-A~~ 175 (498)
+..+|...|+.+-..- .-...+...+..+|...+++++|+++|+.+.+ .+.+.|.+.+-.+.+.-.+.- |..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 3456666666633332 22335566666777777777777777766542 256677776665544333222 233
Q ss_pred HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 010881 176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254 (498)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (498)
+.+.. ...+.+|..+.++|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.... .|
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~ 485 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD 485 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence 33332 34678888888888888999999999888877 355 667888888888888888999888887764 44
Q ss_pred hhHHH---HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881 255 IILGT---AIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328 (498)
Q Consensus 255 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 328 (498)
+..|+ -+.-.|.+.++++.|+-.|+++.+ .+.+....+...+.+.|+.++|++++++.... .|.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~k-------- 555 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPK-------- 555 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCC--------
Confidence 55554 466788899999999999998886 35567777778888899999999999998764 333
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
|+-.-...+..+...++.++|+..++++ .+.| +...|..+...|.+.|+.+.|+.-|.-+.+++|.-..
T Consensus 556 ---n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 ---NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ---CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4555556677788889999999999998 5566 5667777888999999999999999999999987543
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.1e-11 Score=101.25 Aligned_cols=298 Identities=12% Similarity=0.088 Sum_probs=168.6
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhh-------HHHHHHHHHccCCHHHH
Q 010881 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS-------WTSLINGYAKSGQISIA 173 (498)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~A 173 (498)
..+.++|...|-+|.+..+ .+..+.-+|.+.|.+.|..|.|+++.+.+......| ...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4577888888888877542 345566677788888888888888887765432222 23344556677777777
Q ss_pred HHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 010881 174 RQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250 (498)
Q Consensus 174 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (498)
+.+|..+.+. -......|+..|-...+|++|+++-+++.+.+..+...- |
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I----------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I----------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H-----------------------
Confidence 7777777653 234555677777777777777777777766554433211 0
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327 (498)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 327 (498)
...|..|...+....+.+.|...+.+..+. .+..--.+.+.+...|++..|.+.++...+.+.
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~---------- 245 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP---------- 245 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh----------
Confidence 122333333334444555555555554432 122222334455556666666666666555421
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
.--..+...|..+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.+-+...|.--..+..+-
T Consensus 246 --~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 246 --EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred --HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 112344555666666666666666666555 33344444444444444444556666666666666665443333222
Q ss_pred HHhH--hcCCcchHHHHHHhhhhCCccccCceeEEEEC
Q 010881 407 NIYA--STEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD 442 (498)
Q Consensus 407 ~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 442 (498)
.-+. ..|++.+-.-+++.|....++..|.+..-..+
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG 361 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG 361 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC
Confidence 2222 23557777777888877766666655443333
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.8e-10 Score=99.44 Aligned_cols=287 Identities=13% Similarity=0.112 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC---chhHHHHHHH
Q 010881 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES---YDFVLNGLLH 131 (498)
Q Consensus 55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~ 131 (498)
.|-.=++.+. ++++++|+++|-+|.+.+ +-+..+-.+|-+.|.+.|..++|.++++.+.++.--+ -......|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3433344333 578999999999999832 1234445667788999999999999999998752111 1233456777
Q ss_pred HHHhCCChhhHHHHhhccCCCC---hhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHH--------HHHHHHhCCC
Q 010881 132 LYATCNCMDPARKLFDMSVNRD---VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA--------MINGYVQVDL 200 (498)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------li~~~~~~g~ 200 (498)
-|...|-+|.|+++|..+.+.. ..+...|+..|....++++|+++-+++.+.+...|+. +...+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 8999999999999999988643 4567789999999999999999988776544444443 3334444556
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 010881 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS 280 (498)
Q Consensus 201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (498)
.+.|...+++..+.+ | ..+..--.+.+.+...|+++.|.+.++.
T Consensus 196 ~d~A~~~l~kAlqa~--~----------------------------------~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 196 VDRARELLKKALQAD--K----------------------------------KCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred HHHHHHHHHHHHhhC--c----------------------------------cceehhhhhhHHHHhccchHHHHHHHHH
Confidence 666666666665542 2 2333333444555555555555555555
Q ss_pred CCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 010881 281 MPNRDV----FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356 (498)
Q Consensus 281 ~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 356 (498)
+.+.|+ .+...|..+|.+.|+.++....+.++.+... ....-..+.+.-....-.+.|..++
T Consensus 240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--------------g~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--------------GADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--------------CccHHHHHHHHHHHhhChHHHHHHH
Confidence 554333 2345555666667777777777766666421 2233333334333444445555554
Q ss_pred Hh-CCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 010881 357 RE-MPIEPDNYVLGALLNACRVH---GDVDLGKETVESLVE 393 (498)
Q Consensus 357 ~~-~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 393 (498)
.+ +.-+|+...+..|+...... |...+....++.|+.
T Consensus 306 ~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 306 TRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 43 35578888777777765332 334445555555554
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=9.3e-11 Score=104.01 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 331 (498)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|...+++.......|.
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------- 133 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ----------- 133 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-----------
Confidence 34444455555555555555555554432 2334555556666667777777777777665321111
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++..+
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456667778888888888888888877 3344 4667777888888888899998888888888777777777788888
Q ss_pred HhcCCcchHHHHHHhhhh
Q 010881 410 ASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~ 427 (498)
...|+.++|..+.+.+.+
T Consensus 214 ~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 888888888888777654
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.1e-09 Score=97.63 Aligned_cols=291 Identities=11% Similarity=-0.007 Sum_probs=226.9
Q ss_pred HHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 010881 24 GKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD 100 (498)
Q Consensus 24 ~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 100 (498)
.++..+..+..-|++..|++...+-.+ .....|-.-.++--+.|+.+.+-..+.+..+.--.++...+-+..+....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 344455554444999999999987553 33455666667777889999999999999884223445556666677889
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-----------ChhhHHHHHHHHHccCC
Q 010881 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-----------DVISWTSLINGYAKSGQ 169 (498)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~ 169 (498)
.|+++.|..-..++.+.++. +..+......+|.+.|++.....++..+.+. ...+|+.++.-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998855 6778888999999999999999999887653 22467778877777777
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010881 170 ISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246 (498)
Q Consensus 170 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 246 (498)
.+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+-.+.+-++...-.+..+.-
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHH
Confidence 7776677777763 35667777888899999999999999999998877772 2223455667777766666655
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
.+.. +.++..+.+|...|.+.+.+.+|...|+...+ ++..+|+.+..++.+.|+..+|.+++++.+..-..|+
T Consensus 321 l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 321 LKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 4432 45568899999999999999999999998764 7899999999999999999999999999876544443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.8e-11 Score=105.51 Aligned_cols=226 Identities=11% Similarity=0.044 Sum_probs=196.1
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267 (498)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (498)
-+.+.++|.+.|.+.+|...++.-+.. .|-..||..+-..|.+..++..|..++.+-.+.- +-++....-..+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 357889999999999999999998876 5677789999999999999999999999888763 5555555677888999
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHh
Q 010881 268 CGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG 344 (498)
Q Consensus 268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (498)
.++.++|.++|+...+ .++....++...|.-.++++-|+.+|++++..|+. +++.|+.+.-+|.
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------speLf~NigLCC~ 369 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------SPELFCNIGLCCL 369 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-------------ChHHHhhHHHHHH
Confidence 9999999999998775 36667777778899999999999999999998853 4689999999999
Q ss_pred hcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881 345 RAGMLEAAKKVVREM---PIEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419 (498)
Q Consensus 345 ~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (498)
-.+++|-++.-|++. --.| -..+|-.+.......||+..|.+.|+.++..++++...++.|+..-.+.|++++|.
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence 999999999999887 2234 35678888888889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCC
Q 010881 420 KVRRGMEDNE 429 (498)
Q Consensus 420 ~~~~~m~~~~ 429 (498)
.+++......
T Consensus 450 sll~~A~s~~ 459 (478)
T KOG1129|consen 450 SLLNAAKSVM 459 (478)
T ss_pred HHHHHhhhhC
Confidence 9999887643
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2.8e-09 Score=95.03 Aligned_cols=276 Identities=10% Similarity=0.030 Sum_probs=164.9
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC----ChhhHHHHHHHHHccCCHHHHHHH
Q 010881 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR----DVISWTSLINGYAKSGQISIARQM 176 (498)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~ 176 (498)
.|++.+|++...+..+.+..| ...|..-..+.-..|+.+.+-+++.+..++ +...+-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777766665555332 233444445555667777777776665433 223445555566667777777666
Q ss_pred HhhCC---CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHH
Q 010881 177 FDKMP---EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH-------AGIVGALTACAFLGALDQGRWIHAYV 246 (498)
Q Consensus 177 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 246 (498)
.+++. ..++........+|.+.|++.+...++.+|.+.|.-.+. .++..++.-+...+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 65544 447788888899999999999999999999988865553 34555555555555555545555555
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh
Q 010881 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS 324 (498)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 324 (498)
.+.- ..++.+-.+++.-+.++|+.++|.++.++..++ |.. -...-.+.+.++...-++..++-... .|+
T Consensus 256 pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~---- 326 (400)
T COG3071 256 PRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPE---- 326 (400)
T ss_pred cHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh--CCC----
Confidence 4432 445555566666666677777766666555432 222 11112334445555555544444432 122
Q ss_pred hhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
++..+..|...|.+.+.+.+|...|+.. ...|+..+|+.+..++.+.|+..+|.++.++.+.
T Consensus 327 -------~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 -------DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -------ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3355666666666666666666666655 5566666666666666666666666666666553
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.3e-09 Score=101.09 Aligned_cols=249 Identities=10% Similarity=-0.031 Sum_probs=155.5
Q ss_pred HHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 010881 164 YAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240 (498)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 240 (498)
+-..+++.+..++++.+.+. ....+..-|.++...|+..+-..+=.+|++. .+-...+|-++.--|...|+..+|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 33445555555555554432 2233334444555555555555555555543 2233345555555555555555555
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317 (498)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 317 (498)
+.|....... +.-...|-.+...|+-.|.-+.|...+..+.+ .....+--+.--|.+.+...-|.+.|.+... +
T Consensus 333 ry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i 409 (611)
T KOG1173|consen 333 RYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--I 409 (611)
T ss_pred HHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 5555544432 22334555555555555555555555443322 1111111122235555666666666655543 3
Q ss_pred CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----PI---EP-DNYVLGALLNACRVHGDVDLGKETV 388 (498)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (498)
.|+ |+...+-+.-.....+.+.+|..+|+.. .+ .+ -..+++.|..+|.+.+.+++|+..+
T Consensus 410 ~P~-----------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 410 APS-----------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred CCC-----------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 444 6788888888888899999999999876 11 11 3457888999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
++++.+.|.+..++..++.+|...|+++.|+..|.+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.2e-09 Score=98.59 Aligned_cols=261 Identities=13% Similarity=0.039 Sum_probs=130.2
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHH
Q 010881 95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQIS 171 (498)
Q Consensus 95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 171 (498)
..-|...+++....++.+.+.+.. ++....+..-|.++...|+..+-..+=.+++. ..+.+|-++..-|.-.|..+
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 333445566666666666666554 23334444444455555555554444444442 24456666666666666666
Q ss_pred HHHHHHhhCCCCC---hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881 172 IARQMFDKMPEKN---AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248 (498)
Q Consensus 172 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (498)
+|.+.|.+...-| ...|-.+...|+-.|.-++|+..|...-+- ++-....+.-+.--|.+.++.+.|.++|.+...
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6666666554322 345666666666666666666666555432 111222223333344555666666666665554
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010881 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR----------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVV 318 (498)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 318 (498)
.. |.|+.+.+-+.-.....+.+.+|...|+....+ -..+++.|..+|.+.+++++|+..+++.+.. .
T Consensus 409 i~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~ 485 (611)
T KOG1173|consen 409 IA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--S 485 (611)
T ss_pred cC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--C
Confidence 43 445555555555555555666666655543310 1123444444444444555555444444442 1
Q ss_pred CCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 010881 319 PNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGAL 371 (498)
Q Consensus 319 p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 371 (498)
|. +..++.++.-.|...|+++.|.+.|.+. .+.|+..+-..+
T Consensus 486 ~k-----------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 486 PK-----------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred CC-----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 11 3444444444444444444444444444 444444333333
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=3e-12 Score=82.15 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 010881 51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD 100 (498)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 100 (498)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=1.5e-09 Score=96.22 Aligned_cols=196 Identities=13% Similarity=0.006 Sum_probs=143.5
Q ss_pred hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264 (498)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (498)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4456666777777777777777777776642 2234556666677777788888888877777664 4455667777778
Q ss_pred HHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881 265 YAKCGCIETACSVFDSMPN-----RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l 339 (498)
+...|++++|...|++... .....+..+...+...|++++|...+.+.... .|+ +...+..+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l 175 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQ-----------RPESLLEL 175 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC-----------ChHHHHHH
Confidence 8888888888888887654 13346666777888889999999999888764 232 45678888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
...+...|++++|...+++. ...| +...+..+...+...|+.+.|..+.+.+....
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88899999999999988887 3233 56667777788888899999998888776654
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=7.5e-12 Score=80.28 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232 (498)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 232 (498)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999998888864
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=7.5e-10 Score=105.55 Aligned_cols=234 Identities=13% Similarity=0.068 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHc-----C-CCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhCC----CCC
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLC-----G-FRPNHAGIV-GALTACAFLGALDQGRWIHAYVDRNGI----ELD 254 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~ 254 (498)
.+...+...|...|++++|..+++..++. | ..|...+.. .+...|...+++++|..+|+.+...-. +-+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555888999999999999999988764 2 234444333 366778889999999999998865311 222
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C
Q 010881 255 ---IILGTAIIDMYAKCGCIETACSVFDSMPN----------RDV-FAYTSLISGLANHDQSASAIELFMRMQLEG---V 317 (498)
Q Consensus 255 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~ 317 (498)
..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..++.+..+.- .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 34566777789999999988887776542 222 246667778999999999999998876531 1
Q ss_pred CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 010881 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---------PIEP-DNYVLGALLNACRVHGDVDLGKET 387 (498)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 387 (498)
.+++ .....+++.|...|...|++++|.++++++ +..+ ....++.|...|.+.+++.+|.++
T Consensus 360 g~~~--------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 360 GEDN--------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred cccc--------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 1110 113678999999999999999999999987 2223 356788899999999999999999
Q ss_pred HHHHHh----cCCCCc---hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 388 VESLVE----RSLDHE---GVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 388 ~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
|.+... .+|+++ .+|..|+..|...|++++|.++.+....
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 988764 556554 4577999999999999999999888763
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=3.3e-09 Score=101.27 Aligned_cols=245 Identities=16% Similarity=0.087 Sum_probs=148.7
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHh-----CC-CCchhH-HHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHH
Q 010881 90 TFSFILRACADTSCLFVGLICHAQVIRL-----GW-ESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162 (498)
Q Consensus 90 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 162 (498)
+...+...|...|+++.|..++++.++. |. .|...+ .+.+...|...+++++|..+|+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~--------------- 265 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYE--------------- 265 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHH---------------
Confidence 4444556666666666666666666553 10 111111 2223344444444444444442
Q ss_pred HHHccCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881 163 GYAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238 (498)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 238 (498)
+|..+++...-+ -..+++.|..+|.+.|++++|...++...+.
T Consensus 266 ---------~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------------------ 312 (508)
T KOG1840|consen 266 ---------EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------------------ 312 (508)
T ss_pred ---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH------------------------
Confidence 233333333322 3456778888899999999998888876542
Q ss_pred HHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCC-------CC-C---hhHHHHHHHHHHhcCChHHHH
Q 010881 239 GRWIHAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMP-------NR-D---VFAYTSLISGLANHDQSASAI 306 (498)
Q Consensus 239 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-~---~~~~~~li~~~~~~~~~~~a~ 306 (498)
++..... ..|.+ ..++.+...++..+++++|..+++... .+ + ..+++.|...|...|++++|.
T Consensus 313 ----~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 313 ----YEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred ----HHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 1110000 01111 122344445555566665555554432 11 2 347888888999999999999
Q ss_pred HHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHH
Q 010881 307 ELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM--------PIEP-DNYVLGALLNACR 376 (498)
Q Consensus 307 ~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~ 376 (498)
+++++.....-... .+..+ ....++.|...|.+.++..+|.++|.+. +-.| ...+|..|...|.
T Consensus 388 ~~~k~ai~~~~~~~------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 388 ELYKKAIQILRELL------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred HHHHHHHHHHHhcc------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 99988876421111 01122 3567888999999999999999988876 2334 3568999999999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 010881 377 VHGDVDLGKETVESLVE 393 (498)
Q Consensus 377 ~~g~~~~A~~~~~~~~~ 393 (498)
..|+++.|.++.+.+..
T Consensus 462 ~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVLN 478 (508)
T ss_pred HcccHHHHHHHHHHHHH
Confidence 99999999999998874
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=1.2e-09 Score=109.03 Aligned_cols=257 Identities=12% Similarity=0.061 Sum_probs=170.6
Q ss_pred ChhhHHHHHHHHHc-----cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHH---------hCCCHhHHHHHHHHHHHcC
Q 010881 153 DVISWTSLINGYAK-----SGQISIARQMFDKMPEK---NAVSWSAMINGYV---------QVDLFKEALEHFNYMQLCG 215 (498)
Q Consensus 153 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g 215 (498)
+...|...+.+-.. .++.++|...|++..+. +...|..+..++. ..+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555555555321 23467888888887643 3445555554443 2344788888888888753
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHH
Q 010881 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD-VFAYTSL 292 (498)
Q Consensus 216 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l 292 (498)
+-+...+..+...+...|++++|...++++.+.+ +.+...+..+..+|...|++++|...++++.+ |+ ...+..+
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 2245566666677778889999999998888876 55677788888888889999999999888765 32 2233344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 010881 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGA 370 (498)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 370 (498)
+..+...|++++|...++++.... .|+ +...+..+..++...|+.++|...+.++ ...|+ ....+.
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~-----------~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~ 480 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQD-----------NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNL 480 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-ccc-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHH
Confidence 445666788889999888877642 222 3556777888888899999999988887 44554 333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 371 LLNACRVHGDVDLGKETVESLVERS---LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
+...|...| +.|...++.+.+.. +.++. .+...+.-.|+-+.+... +++.+.+
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 555566666 47777777766533 33332 255566667776666555 7776654
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.9e-08 Score=86.94 Aligned_cols=299 Identities=12% Similarity=-0.045 Sum_probs=194.4
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHH---HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010881 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA---MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227 (498)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 227 (498)
+.|+.....+...+...|+.++|+..|++...-|+.+... ..-.+.+.|+++....+...+.... +-+...|-.-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3466777778888888888888888888766444333222 2334456778877777777765431 12223333333
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHH
Q 010881 228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSAS 304 (498)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 304 (498)
.......+++.|..+-+..++.. +.+...+-.-..++...++.++|.-.|+.... -+..+|.-|+.+|...|+..+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33445667777777777766654 44555555555667778888888888876543 367788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 010881 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV-DLLG-RAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGD 380 (498)
Q Consensus 305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 380 (498)
|..+-+...+. +..+..+...+. ..+. ....-++|..++++. .++|+ ....+.+...|...|.
T Consensus 387 A~~~An~~~~~-------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 387 ANALANWTIRL-------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHHHHHH-------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence 88776665542 112345554442 2222 223347788888876 66774 5566667777888888
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHH
Q 010881 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460 (498)
Q Consensus 381 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (498)
.++++.++++.+...|+.. ....|+..+...+.+.+|...|..... ..|+.+.
T Consensus 454 ~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~ 506 (564)
T KOG1174|consen 454 TKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKR 506 (564)
T ss_pred cchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchH
Confidence 8888888888888777754 788888888888888888888866653 2445556
Q ss_pred HHHHHHHHHHHHHhcC--cccCCccccccCCcc
Q 010881 461 IVLLLFGIDKHLKSLC--FFDDGNEVATEGGSL 491 (498)
Q Consensus 461 ~~~~l~~~~~~~~~~g--~~~~~~~~~~~~~~~ 491 (498)
...-+..+.+.+.+.. -+.|.+-|=+.+|.+
T Consensus 507 sl~Gl~~lEK~~~~~DATdE~D~~~V~D~~G~~ 539 (564)
T KOG1174|consen 507 TLRGLRLLEKSDDESDATDESDQQSVNDLTGLC 539 (564)
T ss_pred HHHHHHHHHhccCCCCccccccccchhhccCcc
Confidence 6666665566555332 333444466666654
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=4.8e-09 Score=102.27 Aligned_cols=245 Identities=14% Similarity=0.080 Sum_probs=134.0
Q ss_pred HHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCCh
Q 010881 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV 154 (498)
Q Consensus 75 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 154 (498)
++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.....++.++......++.+.+. .|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 4444555566666666666666666666666665 6665555555555556666666666655555443 4555
Q ss_pred hhHHHHHHHHHccCCHHH---HHH--------------------HHhhCC-CC-ChhHHHHHHHHHHhCCCHhHHHHHHH
Q 010881 155 ISWTSLINGYAKSGQISI---ARQ--------------------MFDKMP-EK-NAVSWSAMINGYVQVDLFKEALEHFN 209 (498)
Q Consensus 155 ~~~~~li~~~~~~~~~~~---A~~--------------------~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (498)
.+|+.|..+|...||+.. +.+ ++..+. .| ....-...+....-.|.++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666443 121 111111 00 01111123333444555666665555
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----
Q 010881 210 YMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---- 284 (498)
Q Consensus 210 ~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 284 (498)
.+.-.. ..|. ..+++-+.. ......++........-.|++.++.+++++-..+|+.+.|..++..|.+.
T Consensus 164 ~~Pvsa~~~p~----~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWNAPF----QVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCcccccchH----HHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 442110 1111 112333322 22233334433333222588888888888888888888888888888764
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (498)
+..-|-.|+-+ .+...-+..+++.|.+.|+.|+ ..|+...+..+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~------------seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG------------SETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCC------------cchhHHHHHhhhcchh
Confidence 22223333333 6777777888888888766555 6777777766666555
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1.6e-09 Score=108.14 Aligned_cols=227 Identities=9% Similarity=-0.055 Sum_probs=172.3
Q ss_pred ChhHHHHHHHHHHh-----CCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 010881 184 NAVSWSAMINGYVQ-----VDLFKEALEHFNYMQLCGFRPNHA-GIVGALTACA---------FLGALDQGRWIHAYVDR 248 (498)
Q Consensus 184 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 248 (498)
+...|...+.+-.. .+.+++|...|++..+. .|+.. .+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555566555322 23467999999999875 56544 4444433332 23457899999999998
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881 249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325 (498)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 325 (498)
.. +.+...+..+..++...|++++|...|+++.+ | +...+..+...+...|++++|...+++..+. .|+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~----- 404 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPT----- 404 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-----
Confidence 76 66788888899999999999999999998775 3 4567888999999999999999999999885 343
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
+...+..++..+...|++++|...+++. ...| ++..+..+..++...|++++|...+.++....|.+....
T Consensus 405 ------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 405 ------RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAV 478 (553)
T ss_pred ------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHH
Confidence 2333444555677789999999999887 2235 455577788888999999999999999888888887777
Q ss_pred HHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 403 VLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
..++..|...| +.|...++.+.+.
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHH
Confidence 78888888888 4888888887654
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.5e-08 Score=91.22 Aligned_cols=358 Identities=10% Similarity=-0.003 Sum_probs=238.0
Q ss_pred HHHHhhcCCCCChhHHHHHhhhcC--CCC-cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc-chHHHHHHHHHcc
Q 010881 26 IIGFCSASDIGDLSHGYRLFVCLQ--YRT-TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN-YTFSFILRACADT 101 (498)
Q Consensus 26 l~~~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 101 (498)
.-+-|-+. |.+++|.+.+.+.. .|| ++.|.....+|...|++++..+---+.++ +.|+- ..+..-..++-..
T Consensus 121 ~GN~~f~~--kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRN--KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhc--ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 33456666 89999999999876 466 77888888899999999998887777776 44542 2333344445555
Q ss_pred CCcHHHH----------------------HHHHHH--------HH-hC--CCCchhHHHHHHHHHHhC--------C---
Q 010881 102 SCLFVGL----------------------ICHAQV--------IR-LG--WESYDFVLNGLLHLYATC--------N--- 137 (498)
Q Consensus 102 g~~~~a~----------------------~~~~~~--------~~-~~--~~~~~~~~~~l~~~~~~~--------g--- 137 (498)
|++++++ ++++.. .+ .+ +-|+.....+....+... +
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 5555443 122111 11 11 224444444444333211 1
Q ss_pred --ChhhHHHHhhccC--------------------CC-----Chhh----HHHHHH--HHHccCCHHHHHHHHhhCCCC-
Q 010881 138 --CMDPARKLFDMSV--------------------NR-----DVIS----WTSLIN--GYAKSGQISIARQMFDKMPEK- 183 (498)
Q Consensus 138 --~~~~a~~~~~~~~--------------------~~-----~~~~----~~~li~--~~~~~~~~~~A~~~~~~~~~~- 183 (498)
...++.+.+.... .+ |... -..++. -+.-.|+.-.|..-|+.....
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 1122222221110 01 1111 111111 123467777787777777642
Q ss_pred --ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881 184 --NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261 (498)
Q Consensus 184 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (498)
+...|--+...|....+.++....|.+..+.+ +-|+.+|..-.+...-.+++++|..-|+..+... +.+...|-.+
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 33347778889999999999999999998764 3355567666677777889999999999988775 5566667777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHH
Q 010881 262 IDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC 338 (498)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~ 338 (498)
.-+..+.++++++...|++..+ | .+..|+-....+..++++++|.+.|+...+. .|+. +++..+..++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~-----~~~~v~~~plV~ 507 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPRE-----HLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccc-----ccccccchhhhh
Confidence 7777789999999999999886 3 5678999999999999999999999999874 3432 122222222211
Q ss_pred -HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881 339 -LVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 339 -l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
-+-.+.-.+++..|..++++. .+.| ....|..|...-.+.|+.++|+++|++...+-.
T Consensus 508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 508 KALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111222458999999999998 7777 677899999999999999999999999877543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.9e-10 Score=98.23 Aligned_cols=230 Identities=12% Similarity=0.041 Sum_probs=195.1
Q ss_pred HHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccC
Q 010881 158 TSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-GALTACAFLG 234 (498)
Q Consensus 158 ~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~ 234 (498)
+-+..+|.+.|.+.+|++.|+...+ |-+.||-.|-+.|.+..+++.|+.+|.+-++. .|-.+||. -....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5688899999999999999987763 57889999999999999999999999998874 56666665 4556677889
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMR 311 (498)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (498)
+.++|.++++.+.+.. +.++....++...|.-.++.+.|.+.|+++.+ .++..|+.+.-+|.-.++++-++..|.+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999998876 77788888888888899999999999998775 6788999999999999999999999999
Q ss_pred HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010881 312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVE 389 (498)
Q Consensus 312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (498)
.+..--.|+. -..+|..+.......||+.-|.+.|+-. .-.| +...++.|.-.-.+.|++++|..+++
T Consensus 384 Alstat~~~~----------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 384 ALSTATQPGQ----------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHhhccCcch----------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8876444442 4678889999999999999999999987 3234 67889999988899999999999999
Q ss_pred HHHhcCCCCch
Q 010881 390 SLVERSLDHEG 400 (498)
Q Consensus 390 ~~~~~~~~~~~ 400 (498)
.+....|+-..
T Consensus 454 ~A~s~~P~m~E 464 (478)
T KOG1129|consen 454 AAKSVMPDMAE 464 (478)
T ss_pred HhhhhCccccc
Confidence 99999887443
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-07 Score=91.50 Aligned_cols=405 Identities=14% Similarity=0.057 Sum_probs=263.8
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 010881 8 QSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84 (498)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 84 (498)
+..+....+..++.+|..|.-+...+ |+++.+-+.|+.... .....|+.+-..+...|.--.|+.+++.-....-
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~ 388 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE 388 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence 44555566778999999999999999 999999999998653 3556788999999999999999999988765432
Q ss_pred CCC-cchHHHHHHHHH-ccCCcHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhC----C-------ChhhHHHHhh
Q 010881 85 LPN-NYTFSFILRACA-DTSCLFVGLICHAQVIRLG--W--ESYDFVLNGLLHLYATC----N-------CMDPARKLFD 147 (498)
Q Consensus 85 ~p~-~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~----g-------~~~~a~~~~~ 147 (498)
.|+ ...+-..-..|. +.+..+++..+..+++... . ......+..+.-+|... . ...++.+.++
T Consensus 389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 343 333444444444 4577788888777777621 1 11223333333333321 1 1234555666
Q ss_pred ccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-
Q 010881 148 MSVN---RDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN- 219 (498)
Q Consensus 148 ~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~- 219 (498)
+.++ .|+.+.-.+.--|+..++++.|.+..++.. ..+...|..+...+...+++.+|+.+.+..... .|+
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N 546 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDN 546 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhh
Confidence 6543 244444444455777889999888877664 347788999999999999999999998887653 111
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH---------------------hCC------CC-ChhHHHHHHHHHHh---c
Q 010881 220 HAGIVGALTACAFLGALDQGRWIHAYVDR---------------------NGI------EL-DIILGTAIIDMYAK---C 268 (498)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~------~~-~~~~~~~l~~~~~~---~ 268 (498)
..-...-+..-...++.+++......+.. .|. +. ...++..+...... .
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 00000111111123344443332222211 010 00 11222222221111 1
Q ss_pred CCHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881 269 GCIETACSVFDSMPNRD------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342 (498)
Q Consensus 269 g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 342 (498)
-..+.....+.....|+ ...|......+...+..++|...+.+.... .| -....|......
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~-----------l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DP-----------LSASVYYLRGLL 693 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--ch-----------hhHHHHHHhhHH
Confidence 11111111122222232 234556667788889999999888887552 22 256778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchHHHHHHHHhHhcCCcchH
Q 010881 343 LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKE--TVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418 (498)
Q Consensus 343 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 418 (498)
+...|...+|.+.|... .+.| ++.+..++...+.+.|+..-|.. ++..+++.+|.++..|+.++.++.+.|+.++|
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 89999999999999887 6777 57788889999999998888888 99999999999999999999999999999999
Q ss_pred HHHHHhhhhCC
Q 010881 419 EKVRRGMEDNE 429 (498)
Q Consensus 419 ~~~~~~m~~~~ 429 (498)
.+.|....+..
T Consensus 774 aecf~aa~qLe 784 (799)
T KOG4162|consen 774 AECFQAALQLE 784 (799)
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 69
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5e-08 Score=90.47 Aligned_cols=367 Identities=13% Similarity=0.053 Sum_probs=227.4
Q ss_pred CChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCCcHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-NYTFSFILRACADTSCLFVGLICH 111 (498)
Q Consensus 36 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 111 (498)
|+++.|...|.... .+|.+.|+.-..+|+..|++++|++=-.+-++ +.|+ ...|+..-.++.-.|++++|...|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 99999999998744 56888899999999999999999877666666 6676 456888989999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhh------ccC-CC------ChhhHHHHHHHHHc----------cC
Q 010881 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD------MSV-NR------DVISWTSLINGYAK----------SG 168 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~-~~------~~~~~~~li~~~~~----------~~ 168 (498)
.+-++..+ .+...++.+..++... . .+.+.|. ... .| ....|..++..+-+ -.
T Consensus 94 ~~GL~~d~-~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 94 SEGLEKDP-SNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHhhcCC-chHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 99888753 3666777777776211 0 1111111 110 00 11123333322211 11
Q ss_pred CHHHHHHHHhhCC----------------CC------------C----------hhHHHHHHHHHHhCCCHhHHHHHHHH
Q 010881 169 QISIARQMFDKMP----------------EK------------N----------AVSWSAMINGYVQVDLFKEALEHFNY 210 (498)
Q Consensus 169 ~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (498)
.+..|.-.+.... .| + ......+.++..+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1112222211110 00 0 11244556666666777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-------HHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010881 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII-------LGTAIIDMYAKCGCIETACSVFDSMPN 283 (498)
Q Consensus 211 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 283 (498)
..... -+..-++..-.++...|.+..+...-....+.|.. ... ....+..+|.+.++++.|...|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 66643 33334445555566666666655555444444311 111 111233355555666666666665432
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 010881 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE 362 (498)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 362 (498)
+... -....+....+++........- +.|. . ..-.-.-...+.+.|++.+|...|.++ ...
T Consensus 327 e~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe----------~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 327 EHRT-----PDLLSKLKEAEKALKEAERKAY--INPE----------K-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChh----------H-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 1100 0011122223333333333222 1111 0 111222367788999999999999998 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 363 P-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 363 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
| |...|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.|++..+.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6 788999999999999999999999999999999999999999999999999999999998887655
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=6.1e-09 Score=95.28 Aligned_cols=211 Identities=13% Similarity=-0.007 Sum_probs=107.3
Q ss_pred CHhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010881 200 LFKEALEHFNYMQLCG-FRPN--HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276 (498)
Q Consensus 200 ~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 276 (498)
..+.++.-+.++.... ..|+ ...|......+...|+.++|...|....+.. +.+...|+.+...|...|+++.|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555554321 1111 2234444445555566666666666655543 4455666666666666666666666
Q ss_pred HHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 010881 277 VFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353 (498)
Q Consensus 277 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 353 (498)
.|++..+ | +..+|..+...+...|++++|.+.|++..+. .|+ +. ........+...++.++|.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~-----------~~-~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPN-----------DP-YRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------CH-HHHHHHHHHHccCCHHHHH
Confidence 6666543 2 3445666666666666666666666666553 232 11 1111112233455666666
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881 354 KVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLV-------ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424 (498)
Q Consensus 354 ~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (498)
..|.+. ...|+...+ .......|+...+ +.++.+. +..|+.+.+|..++.++.+.|++++|...|++
T Consensus 186 ~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 186 ENLKQRYEKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHHhhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666543 222222111 1122233443332 2233332 33444455666677777777777777777766
Q ss_pred hhhCC
Q 010881 425 MEDNE 429 (498)
Q Consensus 425 m~~~~ 429 (498)
..+.+
T Consensus 262 Al~~~ 266 (296)
T PRK11189 262 ALANN 266 (296)
T ss_pred HHHhC
Confidence 65544
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=4.2e-09 Score=87.05 Aligned_cols=161 Identities=12% Similarity=0.030 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 333 (498)
+...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++.+. +.|+ +.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~-----------~G 103 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPN-----------NG 103 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCC-----------cc
Confidence 4455667788888888888888887763 345777788888888888888888888876 3454 57
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM---PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
.+.|...-.+|..|++++|...|++. +..| -..+|..+.-+..+.|+.+.|...|++.++.+|+.+.....++...
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 77888888888888888888888887 3222 3567778877778888888888888888888888888888888888
Q ss_pred HhcCCcchHHHHHHhhhhCCc
Q 010881 410 ASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.+.|++-.|..+++.....+.
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HhcccchHHHHHHHHHHhccc
Confidence 888888888888888776554
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=4.7e-08 Score=80.96 Aligned_cols=199 Identities=14% Similarity=-0.055 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (498)
+...|.-.|...|++..|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+...+.. +-+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567778889999999999999988863 3344577778888888899999999998888876 667888899999999
Q ss_pred hcCCHHHHHHHHhhCCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881 267 KCGCIETACSVFDSMPN-R----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD 341 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 341 (498)
..|++++|...|+.... | -..+|..+.-+..+.|+.+.|...|++.++. .|+ ...+...+..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~-----------~~~~~l~~a~ 181 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQ-----------FPPALLELAR 181 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcC-----------CChHHHHHHH
Confidence 99999999999998764 4 3468888888888999999999999998884 444 3567778888
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 342 LLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
...+.|++..|..+++.. ...++..++...|..-...|+.+.+-+.=.++.+..|....
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 899999999999999887 44588888888888888899998888888888888887653
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.14 E-value=1.6e-06 Score=82.51 Aligned_cols=387 Identities=10% Similarity=0.014 Sum_probs=246.9
Q ss_pred CChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICH 111 (498)
Q Consensus 36 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 111 (498)
|+-++|......-.. .+.++|..+.-.+....++++|++.|..+.. +.| |...+.-+.-.-+..|+++......
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 888999888876553 4678899999888889999999999999988 445 4455666655567788888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC-----CCChhhHHHH------HHHHHccCCHHHHHHHHhhC
Q 010881 112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV-----NRDVISWTSL------INGYAKSGQISIARQMFDKM 180 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l------i~~~~~~~~~~~A~~~~~~~ 180 (498)
.++++..+ .....|..++.++.-.|+...|..+++... .++...+... .....+.|.++.|.+.+..-
T Consensus 133 ~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 88777643 245667778888888899999988886543 2444443322 23456788888888888776
Q ss_pred CCC--Chh-HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccC-ChHHHHHHHHHHHHhCCCCCh
Q 010881 181 PEK--NAV-SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA-FLG-ALDQGRWIHAYVDRNGIELDI 255 (498)
Q Consensus 181 ~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~ 255 (498)
... |-. .-.+-...+.+.+++++|..+|..+... .||..-|...+..+. ... ..+....+|....+. .|..
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~ 287 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRH 287 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Cccc
Confidence 543 222 2334566788899999999999999886 688887776665554 233 333333556555443 1111
Q ss_pred hHHHHHHHHHHhcCCHH-HHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh--hhh-CCC
Q 010881 256 ILGTAIIDMYAKCGCIE-TACSVFDSMPNRD-VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS--EIY-GIE 330 (498)
Q Consensus 256 ~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~~-~~~ 330 (498)
..-..+--....-..+. ..-.++..+.++. +.++..+...|-.....+-..++.-.+ ..++.++..+. ..- .-+
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y-~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSY-QHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHH-HhhcccccCCCcccccccCC
Confidence 11111111111112222 2233334333332 344555554443333222111111111 22222221000 000 114
Q ss_pred CChHH--HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 331 PGVQH--YGCLVDLLGRAGMLEAAKKVVREM-PIEPDNY-VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 331 ~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
|+... +-.++..+-+.|+++.|..+++.. +-.|+.+ .|..=.+.+...|+++.|..+++++.+++-.+...-..-+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 44444 456788899999999999999988 6677543 4545557788999999999999999999876654444677
Q ss_pred HHhHhcCCcchHHHHHHhhhhCCc
Q 010881 407 NIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
....++.+.++|.++...+-+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 888899999999999998887764
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=9.1e-07 Score=83.14 Aligned_cols=374 Identities=12% Similarity=0.025 Sum_probs=204.7
Q ss_pred HHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC
Q 010881 27 IGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103 (498)
Q Consensus 27 ~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 103 (498)
++.+.+. |++++|.+...++.. .+...+.+=+-++.+.+++++|+.+.+.-.. ...+..-+---.-+..+.+.
T Consensus 19 ln~~~~~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKN--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccc--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 4555555 677777776666542 3445555555566666666666644433211 01111111111223335566
Q ss_pred cHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhhHHHHhhccCC-------------------------------
Q 010881 104 LFVGLICHAQVIRLGWES-YDFVLNGLLHLYATCNCMDPARKLFDMSVN------------------------------- 151 (498)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------------- 151 (498)
.++|...++ |..+ +..+...-...+.+.|++++|..+|+.+.+
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 666666555 2222 233455555556666666666666654421
Q ss_pred CChhhHHHH---HHHHHccCCHHHHHHHHhhCC--------CCC-----h-----hHHHHHHHHHHhCCCHhHHHHHHHH
Q 010881 152 RDVISWTSL---INGYAKSGQISIARQMFDKMP--------EKN-----A-----VSWSAMINGYVQVDLFKEALEHFNY 210 (498)
Q Consensus 152 ~~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~--------~~~-----~-----~~~~~li~~~~~~g~~~~a~~~~~~ 210 (498)
....+|..+ ...++..|++.+|+++++... ..| . ..--.|.-.+-..|+.++|.++|..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 112233332 334667899999999998772 111 1 1122344566778999999999999
Q ss_pred HHHcCCCCCHHHHHHHHH---HHhccCC-hH----------------HHHH------------------HHH----HHHH
Q 010881 211 MQLCGFRPNHAGIVGALT---ACAFLGA-LD----------------QGRW------------------IHA----YVDR 248 (498)
Q Consensus 211 m~~~g~~p~~~~~~~ll~---~~~~~~~-~~----------------~a~~------------------~~~----~~~~ 248 (498)
..+.. .+|........+ ++..-.+ ++ .... +|. +..+
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88764 344322111111 1110000 00 0000 000 0000
Q ss_pred --hCCCCC--hhHHHHHHHHHHh--cCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHH--------
Q 010881 249 --NGIELD--IILGTAIIDMYAK--CGCIETACSVFDSMPNR----DVFAYTSLISGLANHDQSASAIELFM-------- 310 (498)
Q Consensus 249 --~~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~-------- 310 (498)
...++. ...+..++....+ ......|..++....+. ....--.+++.....|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 011111 1223333333222 12345555555555432 23455566777888999999999998
Q ss_pred HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCH
Q 010881 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----PIEPDNY----VLGALLNACRVHGDV 381 (498)
Q Consensus 311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~ 381 (498)
.+.+.+. .+.+...++..+.+.++-+.|-.++.+. .-.+... ++..+...-.+.|+-
T Consensus 409 s~~~~~~--------------~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 409 SILEAKH--------------LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred hhhhhcc--------------ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 4433322 3346667788888888877777777665 1112222 333344445677999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
++|..+++++++.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999998876 446666665444
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=1.4e-06 Score=82.63 Aligned_cols=215 Identities=10% Similarity=0.025 Sum_probs=124.2
Q ss_pred CCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhc
Q 010881 198 VDLFKEALEHFNYMQLCGFRPN------HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD---IILGTAIIDMYAKC 268 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 268 (498)
.|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|+...+...+.- ..+|..-...=.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566666666666543 2331 22355556666677777777777777665443221 23344444444455
Q ss_pred CCHHHHHHHHhhCCC-C--------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881 269 GCIETACSVFDSMPN-R--------------------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327 (498)
Q Consensus 269 g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 327 (498)
.+++.|.++.+.... | +...|...+..--..|-++....+|+++.+..+.
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--------- 509 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--------- 509 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC---------
Confidence 666777776665432 1 2234555555555556667777777777665422
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC--CCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCC-c
Q 010881 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI--EPD-NYVLGALLNACRV---HGDVDLGKETVESLVERSLDH-E 399 (498)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~-~ 399 (498)
++.........+-...-++++.++|++- ++ .|+ ...|+..+.-+.+ ....+.|..+|+++++.-|+. .
T Consensus 510 ----TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~a 585 (835)
T KOG2047|consen 510 ----TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHA 585 (835)
T ss_pred ----CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Confidence 2233333444455667788899988886 22 233 3355555544332 237899999999999966642 2
Q ss_pred -hHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 400 -GVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 400 -~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
..|...+..-.+-|....|..++++.-
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 224444455555677777888887753
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=4.1e-09 Score=98.31 Aligned_cols=254 Identities=10% Similarity=-0.042 Sum_probs=186.3
Q ss_pred HHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010881 193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272 (498)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (498)
.-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +-+..+..+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888999988888888763 3355677777777788888888888888888776 667788888888888888888
Q ss_pred HHHHHHhhCCCCC-hhHHHHHH---------HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881 273 TACSVFDSMPNRD-VFAYTSLI---------SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342 (498)
Q Consensus 273 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 342 (498)
.|...|+...... ...|...- ..+.......+..++|-++.... +..+|+.+...|.-.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~-----------~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL-----------PTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC-----------CCCCChhHHhhhHHH
Confidence 8888888764211 00000000 11222223344555555554431 224567889999999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH
Q 010881 343 LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420 (498)
Q Consensus 343 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 420 (498)
|.-.|.+++|...|+.+ .++| |...||.|...++...+.++|+..|++++++.|....+.+.|+..|...|.|+||.+
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999998 7788 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhc
Q 010881 421 VRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475 (498)
Q Consensus 421 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 475 (498)
.|-......-.. .-.....++ .+.+|..|+..+..|...
T Consensus 520 hlL~AL~mq~ks---------------~~~~~~~~~-se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 520 HLLEALSMQRKS---------------RNHNKAPMA-SENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHHHhhhcc---------------cccccCCcc-hHHHHHHHHHHHHHcCCc
Confidence 887765432110 000011122 578999999777766544
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7e-08 Score=86.47 Aligned_cols=303 Identities=11% Similarity=-0.011 Sum_probs=211.9
Q ss_pred CCcchHHHHHHHHHc--cCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhH---HH
Q 010881 86 PNNYTFSFILRACAD--TSCLFVGLICHAQVIRL-GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW---TS 159 (498)
Q Consensus 86 p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~ 159 (498)
|+..+....+.+++. .++-..+.+.+-.+... -++.|+.....+..++...|+.++|...|++..-.|+.+. ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 444444455555433 34444444443333332 3466788889999999999999999999998654443322 22
Q ss_pred HHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 010881 160 LINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL 236 (498)
Q Consensus 160 li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 236 (498)
....+.+.|+.+.-..+...+... ....|-.-.......++++.|+.+-++..+.. +-+...|..-...+...++.
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERH 350 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccch
Confidence 233455677777766665555432 23344444555667889999999998887642 22334555555667889999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHH-HHHHhc-CChHHHHHHHHH
Q 010881 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLI-SGLANH-DQSASAIELFMR 311 (498)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~~~-~~~~~a~~~~~~ 311 (498)
++|.-.|+...... +.+...|.-|+.+|...|++.+|.-.-+...+ .+..+.+.+. ..+.-. .--++|..++++
T Consensus 351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 99999999888765 67889999999999999999998766554322 2344444332 222222 223678888887
Q ss_pred HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881 312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVES 390 (498)
Q Consensus 312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (498)
.+. +.|+ -....+.+...+...|..+.+..++++. ...||....+.|...+...+.+++|++.|..
T Consensus 430 ~L~--~~P~-----------Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 430 SLK--INPI-----------YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hhc--cCCc-----------cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 665 3444 2566777888999999999999999998 6789999999999999999999999999999
Q ss_pred HHhcCCCCchHHH
Q 010881 391 LVERSLDHEGVHV 403 (498)
Q Consensus 391 ~~~~~~~~~~~~~ 403 (498)
+++.+|++..+..
T Consensus 497 ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 497 ALRQDPKSKRTLR 509 (564)
T ss_pred HHhcCccchHHHH
Confidence 9999999865443
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=4.8e-07 Score=79.32 Aligned_cols=291 Identities=11% Similarity=0.046 Sum_probs=178.2
Q ss_pred HHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHH---HHHccCCHHHHHHHHhhCCCCChhHHHH---HHHHHHhCCCH
Q 010881 128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN---GYAKSGQISIARQMFDKMPEKNAVSWSA---MINGYVQVDLF 201 (498)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~ 201 (498)
-+.+.+...|++..|+.-|...++.|+..|.++.+ .|...|+-..|+.-|....+..+..+.+ -...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 34444455555555555555555555555444432 3444444444444444443211111111 12344555666
Q ss_pred hHHHHHHHHHHHcCCCCC------------H--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881 202 KEALEHFNYMQLCGFRPN------------H--AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267 (498)
Q Consensus 202 ~~a~~~~~~m~~~g~~p~------------~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (498)
++|..=|+..++....-+ . ......+..+...|+...|+.....+.+.. +.|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 666666665554421100 0 011222334556678888888888887775 7788888888888888
Q ss_pred cCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH-----
Q 010881 268 CGCIETACSVFDSMP---NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL----- 339 (498)
Q Consensus 268 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l----- 339 (498)
.|++..|+.-++... ..+..++.-+-..+...|+.+.++...++-++ +.||... --..|-.|
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~--------Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL--------CFPFYKKLKKVVK 271 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh--------HHHHHHHHHHHHH
Confidence 888888877665543 45666666677777888888888888877766 3455300 00111111
Q ss_pred ----HHHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 340 ----VDLLGRAGMLEAAKKVVREM-PIEPDN-----YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 340 ----~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+......+++.++.+-.+.. ...|.. ..+..+-.++...+++.+|++...++++.+|++..++..-+.+|
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 22344567777777777665 444542 23334445667788999999999999999999988888899999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
.-...+|+|+.-|++..+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 99999999999888887654
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=3.4e-06 Score=81.93 Aligned_cols=279 Identities=11% Similarity=0.065 Sum_probs=187.8
Q ss_pred HHHhhcCCCCChhHHHHHhhhcCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHH----
Q 010881 27 IGFCSASDIGDLSHGYRLFVCLQY--RT-TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA---- 99 (498)
Q Consensus 27 ~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~---- 99 (498)
..++... |++++|.+.++.-.. .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+.
T Consensus 11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3556677 999999999987553 23 3456677788999999999999999999855 77777766655544
Q ss_pred --ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh-hHHHHhhccCCCC-hhhHHHHHHHHHccCCHHHHHH
Q 010881 100 --DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD-PARKLFDMSVNRD-VISWTSLINGYAKSGQISIARQ 175 (498)
Q Consensus 100 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~ 175 (498)
...+.+....+++++...-+..+..-.-. +. +..-..+. .+..++..+.... +..|+.+-..|......+-..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~-~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LD-FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhh-cc-cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 12256777888888877654322221111 11 11111122 1222233333333 3445555555554444443344
Q ss_pred HHhhCC------------------CCCh--hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 010881 176 MFDKMP------------------EKNA--VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAFLG 234 (498)
Q Consensus 176 ~~~~~~------------------~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 234 (498)
++.... .|+. .++..+...|...|++++|+.+.++..+. .|+ ...|..-...+-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 433321 1222 24456677888999999999999999886 565 456777788888999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------------hHHHHHHHHHHhcCCh
Q 010881 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV------------FAYTSLISGLANHDQS 302 (498)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~~~~ 302 (498)
++.+|....+...... .-|-.+-+-.+..+.++|++++|.+++.....++. ........+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999876 56777778888999999999999999888776441 1223346689999999
Q ss_pred HHHHHHHHHHHH
Q 010881 303 ASAIELFMRMQL 314 (498)
Q Consensus 303 ~~a~~~~~~m~~ 314 (498)
..|+..|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999987776654
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.7e-06 Score=81.38 Aligned_cols=353 Identities=10% Similarity=0.007 Sum_probs=216.6
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+..+..++++++|.....++...+ +-|...+..-+-+....+.++.|+.+.+.-... ..+...+.--+.+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 456678899999999999999854 335666788888888999999998544332110 11111111223445578999
Q ss_pred hhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC-------------------------------ChhHH
Q 010881 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK-------------------------------NAVSW 188 (498)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------------------------------~~~~~ 188 (498)
|+|...++...+.+..+...-...+.+.|++++|..+|+.+.+. ...+|
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 99999999555556556666777888999999999999988431 11134
Q ss_pred HHH---HHHHHhCCCHhHHHHHHHHHHHcC-------CC------CCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881 189 SAM---INGYVQVDLFKEALEHFNYMQLCG-------FR------PNHAGI-VGALTACAFLGALDQGRWIHAYVDRNGI 251 (498)
Q Consensus 189 ~~l---i~~~~~~g~~~~a~~~~~~m~~~g-------~~------p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 251 (498)
..+ ...++..|++.+|+++++...+.+ -. ....+. ..+.-.+-..|+.++|..++....+..
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~- 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN- 254 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-
Confidence 333 235667899999999999883211 11 111111 122334457899999999999988876
Q ss_pred CCChhHH----HHHHHHHHhc---------------------------------------------CCHHHHHHHHhhCC
Q 010881 252 ELDIILG----TAIIDMYAKC---------------------------------------------GCIETACSVFDSMP 282 (498)
Q Consensus 252 ~~~~~~~----~~l~~~~~~~---------------------------------------------g~~~~A~~~~~~~~ 282 (498)
++|.... |.|+.+-... +..+.+.++-..+.
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 4444322 2222111000 01111111111111
Q ss_pred CC-ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH--
Q 010881 283 NR-DVFAYTSLISGLAN--HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR-- 357 (498)
Q Consensus 283 ~~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-- 357 (498)
.. ....+.+++....+ ...+.++..++...-+. .|. -...+.-.++......|+++.|.+++.
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~----------~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPE----------KSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCc----------hhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 12234444443222 22355555555554432 111 124566667888889999999999998
Q ss_pred ------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC---CCchHHHHHHHHhHhcCCcchHHHHHH
Q 010881 358 ------EM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE----RSL---DHEGVHVLLSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 358 ------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (498)
.+ .+.-.+.+...+...+.+.++.+.|..+++.++. ..+ ....++..++..-.+.|+-++|..+++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 44 3334455556677778888888888888888875 112 222345556666777899999999999
Q ss_pred hhhhC
Q 010881 424 GMEDN 428 (498)
Q Consensus 424 ~m~~~ 428 (498)
++.+.
T Consensus 483 el~k~ 487 (652)
T KOG2376|consen 483 ELVKF 487 (652)
T ss_pred HHHHh
Confidence 99874
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=1.4e-07 Score=86.42 Aligned_cols=196 Identities=10% Similarity=-0.142 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264 (498)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (498)
...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3457777778888888888888888887753 2345677788888888888888888888888764 4456777778888
Q ss_pred HHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881 265 YAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 342 (498)
+...|++++|.+.|+...+ |+..........+...++.++|...|.+..... . |+...+ .+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~------------~~~~~~-~~~~~ 207 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D------------KEQWGW-NIVEF 207 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C------------ccccHH-HHHHH
Confidence 8888999999988887765 322111111222345678899999887655321 1 111111 22222
Q ss_pred HhhcCCHHH--HHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 343 LGRAGMLEA--AKKVVREM-P----IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 343 ~~~~g~~~~--A~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
..|+..+ +.+.+.+. . +.| ....|..+...+...|++++|+..|+++++.+|.+
T Consensus 208 --~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 208 --YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred --HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 3444433 33333221 1 112 34578889999999999999999999999999754
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.01 E-value=1.9e-05 Score=75.33 Aligned_cols=357 Identities=10% Similarity=0.118 Sum_probs=243.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (498)
..|-.-+..+..+|++..-...|+..+.. .+..-...|...+......+-++.+..++++.++..+ ...+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 46777788888899999999999887653 3444566788888888888889999999999887543 335667888
Q ss_pred HHhCCChhhHHHHhhccCCC----------ChhhHHHHHHHHHccCCHH---HHHHHHhhCCCC----ChhHHHHHHHHH
Q 010881 133 YATCNCMDPARKLFDMSVNR----------DVISWTSLINGYAKSGQIS---IARQMFDKMPEK----NAVSWSAMINGY 195 (498)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~---~A~~~~~~~~~~----~~~~~~~li~~~ 195 (498)
+++.+++++|.+.+...+.. +...|.-+.....+..+.- ....+++.+... -...|++|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 88999999999888776643 3344665555555443322 233445555432 245688999999
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------C------ChHHHHHHHHHHHHhC---
Q 010881 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL----------------G------ALDQGRWIHAYVDRNG--- 250 (498)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~--- 250 (498)
.+.|++++|..+|++..+. ..+..-|..+..+|+.- + +++-...-|+.+...+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999988764 33444455555544321 1 1222223333332221
Q ss_pred --------CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C------ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881 251 --------IELDIILGTAIIDMYAKCGCIETACSVFDSMPN---R------DVFAYTSLISGLANHDQSASAIELFMRMQ 313 (498)
Q Consensus 251 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (498)
-+.++..|..-+.. ..|+..+-..+|.++.. | -...|..+...|-.+|+.+.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 12233333333332 24556666666665542 1 22468888889999999999999999987
Q ss_pred HcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC-----------------CHHHHHHHHH
Q 010881 314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEP-----------------DNYVLGALLN 373 (498)
Q Consensus 314 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p-----------------~~~~~~~l~~ 373 (498)
.-...- +.--..+|..-...=.+..+++.|+.++++. +-.| +...|..++.
T Consensus 415 ~V~y~~---------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 415 KVPYKT---------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred cCCccc---------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 643211 1112566777777778889999999999987 2111 2335666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881 374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 431 (498)
..-..|-++....+|++++++..-.|......+..+....-++++.+++ ++|+.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y----ErgI~ 539 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY----ERGIS 539 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH----HcCCc
Confidence 7777889999999999999999888878888888888899999999999 66665
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1e-06 Score=85.74 Aligned_cols=351 Identities=13% Similarity=0.092 Sum_probs=219.9
Q ss_pred ChhHHHHHH--HHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-C--------CCCC
Q 010881 19 DPFAVGKII--GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-D--------FLPN 87 (498)
Q Consensus 19 ~~~~~~~l~--~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~--------~~p~ 87 (498)
|+.+-.+++ ++|..- |+++.|.+-...+.. -..|..+.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvti--G~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTI--GSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred CHHHHHhhhceeEEEEe--ccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 455556666 567777 999999887776553 357999999999999988887777666432 1 1222
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-ChhhHHHHHHHHHc
Q 010881 88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DVISWTSLINGYAK 166 (498)
Q Consensus 88 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~ 166 (498)
.+=.-+.......|.+++|+.+|++..+.+ .|=..|...|.+++|.++-+.-..- =..+|......+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222233334567899999999999988753 3446677889999999887643322 12456666666677
Q ss_pred cCCHHHHHHHHhhCCCC-----------------------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881 167 SGQISIARQMFDKMPEK-----------------------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223 (498)
Q Consensus 167 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 223 (498)
.+|.+.|++.|++...+ |...|.-....+-..|+.+.|+.+|..... |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 78888888888876532 333444444455566778888888776653 3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH-------
Q 010881 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL------- 296 (498)
Q Consensus 224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~------- 296 (498)
-+++...|-.|+.++|-++-++ . -|......|.+.|-..|++.+|..+|.+... +..-|+.|
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHH
Confidence 4555566677888888777554 2 2556667788888888999888888877542 22222221
Q ss_pred ------Hhc--CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---------
Q 010881 297 ------ANH--DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--------- 359 (498)
Q Consensus 297 ------~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------- 359 (498)
... .+.-.|-.+|++. | .-+...+..|.++|.+.+|+++--+-
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g-----------------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---G-----------------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---c-----------------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 111 2222333444432 1 12233455677777777777652111
Q ss_pred --CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCC------CC---chHHHH
Q 010881 360 --PI--EPDNYVLGALLNACRVHGDVDLGKETVESLVE----------------------RSL------DH---EGVHVL 404 (498)
Q Consensus 360 --~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------~~~------~~---~~~~~~ 404 (498)
.+ ..|+...+.-..-++.+.++++|..++-.+.+ +.| +. ......
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 22 23566666666666666677776665544331 111 11 124567
Q ss_pred HHHHhHhcCCcchHHHHHH
Q 010881 405 LSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~ 423 (498)
++..|.++|.+..|.+-|-
T Consensus 1151 vae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHhccchHHHHHHHh
Confidence 8889999998887766543
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=2.8e-08 Score=89.60 Aligned_cols=219 Identities=10% Similarity=0.010 Sum_probs=125.3
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHH
Q 010881 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-LDIILGTAIIDMYA 266 (498)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 266 (498)
...+.+++...|+++.++ .+.... -.|.......+...+....+-+.+..-+......... .+..+.......+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334556666666655433 222222 2455555444444333323333333333222222212 12222223334455
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh-
Q 010881 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR- 345 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~- 345 (498)
..|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...++.++..
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-------------~~l~qLa~awv~l 176 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-------------SILTQLAEAWVNL 176 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-------------HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-------------HHHHHHHHHHHHH
Confidence 677788777777665 455666667777788888888888888876532 22 334444444332
Q ss_pred ---cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc-chHH
Q 010881 346 ---AGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW-NGVE 419 (498)
Q Consensus 346 ---~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~ 419 (498)
.+.+.+|..+|+++ ...+++.+++.+..++...|++++|.+++.++++.+|.++.+...++.+....|+. +.+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 33578888888887 44567777788888888888888888888888888888887777777777777777 4466
Q ss_pred HHHHhhhh
Q 010881 420 KVRRGMED 427 (498)
Q Consensus 420 ~~~~~m~~ 427 (498)
+++.+++.
T Consensus 257 ~~l~qL~~ 264 (290)
T PF04733_consen 257 RYLSQLKQ 264 (290)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 67777664
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=2.2e-06 Score=75.33 Aligned_cols=322 Identities=11% Similarity=0.005 Sum_probs=203.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHH---HHHHHccCCcHHHHHHHHHHHHhCCCCchhH-HHHH
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI---LRACADTSCLFVGLICHAQVIRLGWESYDFV-LNGL 129 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 129 (498)
.-.--+...+...|++..|+.-|....+ .|+..|-++ ...|...|+-..|+.-+...++. .||-.. ...-
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3344456667777788888888877766 233334333 34466777777777777777764 344322 1223
Q ss_pred HHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHH
Q 010881 130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN 209 (498)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (498)
...+.+.|.++.|..=|+...+.++.- +....++.+.--.++ .......+..+...|+...|+....
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e------------~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQE------------HWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHH------------HHHHHHHHHHHhcCCchhhHHHHHH
Confidence 345666777777777666655332210 000000000000000 0112234455666788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh
Q 010881 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVF 287 (498)
Q Consensus 210 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 287 (498)
.+++. .+.|...+..-..+|...|++..|+.-++.+.+.. .-++..+-.+-..+...|+.+.++...++..+ ||-.
T Consensus 180 ~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 180 HLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 88774 24466666666777788888888877777766654 44555666666777788888888877777664 3221
Q ss_pred ----HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 010881 288 ----AYTSL---------ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354 (498)
Q Consensus 288 ----~~~~l---------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 354 (498)
.|-.| +......+++.++++..+..++.. |.. .......+..+-.++...|++.+|++
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~-------~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEE-------TMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--Ccc-------cceeeeeeheeeecccccCCHHHHHH
Confidence 12111 123455688888888888887753 321 11123445566677788899999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 355 VVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 355 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
...+. .+.|+ ..++.--..+|.-...++.|+.-|+.+.+.++++..+-..+
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99888 77785 88888888999999999999999999999999887554433
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=5.9e-08 Score=87.51 Aligned_cols=224 Identities=14% Similarity=0.062 Sum_probs=140.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCC
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-GALTACAFLGA 235 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~ 235 (498)
...+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++.......++..++. .....+...|+
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~ 117 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGD 117 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC
Confidence 34455666666666655555444444555555444444433344455555554444333232222222 22234456678
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHH
Q 010881 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLAN----HDQSASAIELFM 310 (498)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~ 310 (498)
+++|.+++... .+.......+.+|.+.++++.|.+.++.|.+- +-.+...|..++.. ...+.+|..+|+
T Consensus 118 ~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 118 YEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 88877776432 35566677888888999999999998888753 22233334444332 346899999999
Q ss_pred HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHH
Q 010881 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV-DLGKET 387 (498)
Q Consensus 311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~ 387 (498)
++.+. ..+++.+.+.+..++...|++++|.+++.+. ...| ++.++..++......|+. +.+.+.
T Consensus 192 El~~~-------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 192 ELSDK-------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp HHHCC-------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHhc-------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 98663 3456888899999999999999999999887 4455 667777788887888877 678889
Q ss_pred HHHHHhcCCCCc
Q 010881 388 VESLVERSLDHE 399 (498)
Q Consensus 388 ~~~~~~~~~~~~ 399 (498)
+.++....|+++
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 999998899876
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4.1e-07 Score=80.06 Aligned_cols=348 Identities=11% Similarity=0.048 Sum_probs=177.7
Q ss_pred CChhHHHHHhhhcCCC---CcchHHH-HHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQYR---TTFIWNT-MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH 111 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 111 (498)
.|+..|+.+++.-..- .....+. +...+.+.|++++|+..|..+.++. .|+...+..|.-++.-.|.+.+|.++.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 6888888888754321 1122333 3345567899999999988887743 355555555655555667777776654
Q ss_pred HHHH--------------HhC-----------CCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCC--hhhHHH-HHHH
Q 010881 112 AQVI--------------RLG-----------WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD--VISWTS-LING 163 (498)
Q Consensus 112 ~~~~--------------~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~-li~~ 163 (498)
...- +.+ +.....-.-+|.+.....-.+.+|++++.+....+ -...|. +.-+
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALC 194 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALC 194 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHH
Confidence 3321 111 11111222344555555556788888887765432 222222 1223
Q ss_pred HHccCCHHHHHHHHhhCCC-------------------------------------------------------------
Q 010881 164 YAKSGQISIARQMFDKMPE------------------------------------------------------------- 182 (498)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~------------------------------------------------------------- 182 (498)
|.+..-++-+.++++-...
T Consensus 195 yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHH
Confidence 3333333333333221110
Q ss_pred ---C-----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hccCChHHHHHHHHHHHHh
Q 010881 183 ---K-----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC-----AFLGALDQGRWIHAYVDRN 249 (498)
Q Consensus 183 ---~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~ 249 (498)
| -+.+--.|+--|.+.++..+|..+.+++.- ..|-......+..+. .+...+.-|.+.|..+-.+
T Consensus 275 qVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 275 QVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred HhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 0 011122233345566666666666655431 123222222222221 1112344455555555444
Q ss_pred CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881 250 GIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325 (498)
Q Consensus 250 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 325 (498)
+..-|+ .--.++..++.-..++++++-.+..+.. .|-..--.+.++++..|.+.+|.++|-++....++
T Consensus 353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik------- 425 (557)
T KOG3785|consen 353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK------- 425 (557)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-------
Confidence 433332 2223444444455566666666655543 22222223566777777777777777665332111
Q ss_pred hhCCCCChHHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 326 IYGIEPGVQHYG-CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL-NACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 326 ~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
|..+|. .|..+|.+.+.++-|+.++-++....+..++..+| .-|.+.+.+--|-+.|+.+..++|.+.
T Consensus 426 ------n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 426 ------NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred ------hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 234443 34566777777777777777764333444444444 356677777777777777777776653
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.96 E-value=4.5e-06 Score=79.47 Aligned_cols=386 Identities=9% Similarity=0.072 Sum_probs=226.9
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHhhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 010881 22 AVGKIIGFCSASDIGDLSHGYRLFVCLQYR---TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC 98 (498)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (498)
.+..++..|-. +++....+..+.+.++ ...+.....-.+...|+-++|.+....-...++ -+...|+.+--.+
T Consensus 10 lF~~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHH
Confidence 34444444433 3444444444443322 223333333345556888888888777666443 2566677777777
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHHHHHH
Q 010881 99 ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQISIARQ 175 (498)
Q Consensus 99 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 175 (498)
....++++|.+.|..++..+. .|...+..+.-.-++.++++.....-.+..+ .....|..+..++--.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888763 3666676666666667777766655544432 344667777777777888888888
Q ss_pred HHhhCCC-----CChhHHHHH------HHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCChHHHHHHH
Q 010881 176 MFDKMPE-----KNAVSWSAM------INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-GALTACAFLGALDQGRWIH 243 (498)
Q Consensus 176 ~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~ 243 (498)
+++.... ++...|... .....+.|.+++|++.+..-... ..|...+. +-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 7766542 333333322 23445667777777766554322 22222222 2334456778888888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhhCCCC--ChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCC
Q 010881 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETAC-SVFDSMPNR--DVFAYTSLISGLANHDQ-SASAIELFMRMQLEGVVP 319 (498)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~--~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p 319 (498)
..+.... +-+...|--+..++.+-.+.-++. .+|....+. ....-..+--......+ .+..-.++..+++.|+.+
T Consensus 243 ~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 243 RRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 8887774 333444444555554333333333 555554431 00000000001111122 233445666667766432
Q ss_pred CchhhhhhCCCCChHHHHHHHHHHhhcCCHHHH----HHHHHhC-C------------CCCCHHHHHH--HHHHHHhcCC
Q 010881 320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA----KKVVREM-P------------IEPDNYVLGA--LLNACRVHGD 380 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~-~------------~~p~~~~~~~--l~~~~~~~g~ 380 (498)
++..+...|-.....+-. ..+...+ + -.|....|.. ++..+-..|+
T Consensus 322 ---------------vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 322 ---------------VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred ---------------hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 333344444332222211 1122222 1 1456555544 5667889999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 381 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
++.|..+++.++...|.-+..|..-++++...|..++|...+++..+.+.
T Consensus 387 ~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99999999999999999988999999999999999999999999987665
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=3.9e-06 Score=81.45 Aligned_cols=364 Identities=13% Similarity=0.025 Sum_probs=229.8
Q ss_pred HHhCCCchHHHH----HHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881 63 FAEKNEPIKAFA----LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138 (498)
Q Consensus 63 ~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (498)
++...+.+++.- .+.++....+.-|...|..+.-+....|+++.+.+.|++....-+. ....|+.+...|..+|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhcc
Confidence 333444555543 3344444456668888888888888999999999999888765433 55678888888999999
Q ss_pred hhhHHHHhhccCCCC--h---hhHHHHHHHHH-ccCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhC------
Q 010881 139 MDPARKLFDMSVNRD--V---ISWTSLINGYA-KSGQISIARQMFDKMPE--------KNAVSWSAMINGYVQV------ 198 (498)
Q Consensus 139 ~~~a~~~~~~~~~~~--~---~~~~~li~~~~-~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~------ 198 (498)
-..|..+++....+. + ..+-..-..|. +.+.+++++++-.+... .....|-.+.-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 889999988754332 2 22222222232 33555555444433321 1344555555555432
Q ss_pred -----CCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010881 199 -----DLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272 (498)
Q Consensus 199 -----g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (498)
....++++.+++..+.+ -.|+...|..+ -|+..++++.|.+..++..+.+-..+...|..|.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 12356778888887654 33433333333 35677899999999999998865778888988888888899999
Q ss_pred HHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------cC--C---CCCc--
Q 010881 273 TACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQL---------------------EG--V---VPNE-- 321 (498)
Q Consensus 273 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------~~--~---~p~~-- 321 (498)
+|+.+.+...+. |......-+..-...++.++++.....++. .| . .|.+
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 999988765431 110000000011112222222222111110 00 0 1111
Q ss_pred --------------------hhhhhhCCCCC--------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 010881 322 --------------------SMSEIYGIEPG--------VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGAL 371 (498)
Q Consensus 322 --------------------~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 371 (498)
.........|. ...|....+.+.+.+..++|...+.+. ++.| .+..|...
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 00111112221 234556677888999999999888888 5555 67777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH--HHHhhhhCC
Q 010881 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK--VRRGMEDNE 429 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~ 429 (498)
...+...|...+|.+.|..++.++|+++.....++.++.+.|+-.-|.. ++..+.+.+
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 7888899999999999999999999999999999999999998777766 777766543
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=6.8e-06 Score=81.98 Aligned_cols=237 Identities=13% Similarity=0.086 Sum_probs=123.3
Q ss_pred CChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 010881 137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216 (498)
Q Consensus 137 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 216 (498)
+.+|.|.++-++..+ +..|..+..+-.+.|.+.+|++-|-+.. |+..|.-++....+.|.|++-.+++.-.++..-
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 334444444433322 3346666666666666666666554443 334555666666666666666666655555444
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 010881 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296 (498)
Q Consensus 217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 296 (498)
.|... +.++-+|++.+++.+.+.++ ..||..-...+.+-|...|.++.|.-+|.. +.-|..|...+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHH
Confidence 44433 24455555555554433332 234555555555555555555555555543 34455566666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010881 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR 376 (498)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 376 (498)
...|++..|...-++.. +..||-.+-.+|...+.+.-|.-. -+.+-....-+.-++..|.
T Consensus 1231 V~LgeyQ~AVD~aRKAn------------------s~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKAN------------------STKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred HHHHHHHHHHHHhhhcc------------------chhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHH
Confidence 66666666655444432 245555555555544444322110 0012223444555666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
..|-+++-+.+++..+.+..-+-..|..|+..|++
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 66666666666666665555555555555555544
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=8.9e-06 Score=71.88 Aligned_cols=364 Identities=11% Similarity=0.025 Sum_probs=203.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+.-+...+|+..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566788999999999887654333222333345566789999999999999988754 45666666677777778889
Q ss_pred hhHHHHhhccCCC---------------ChhhHH--------------HHHHHHHccCCHHHHHHHHhhCCCC--ChhHH
Q 010881 140 DPARKLFDMSVNR---------------DVISWT--------------SLINGYAKSGQISIARQMFDKMPEK--NAVSW 188 (498)
Q Consensus 140 ~~a~~~~~~~~~~---------------~~~~~~--------------~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 188 (498)
.+|..+-....+. |..-+. +|....-..-.+.+|++++..+... +-...
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 9998887654321 111111 1111222223466777777776543 33333
Q ss_pred HH-HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhc--cCChHHHH------------HHHHHHHHhCC-
Q 010881 189 SA-MINGYVQVDLFKEALEHFNYMQLCGFRPNHAG-IVGALTACAF--LGALDQGR------------WIHAYVDRNGI- 251 (498)
Q Consensus 189 ~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~--~~~~~~a~------------~~~~~~~~~~~- 251 (498)
|. +.-+|.+..-++-+.++++--++. .||+.. .+.......+ .|+..+.+ ...+.+.++++
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 43 334566777777777777766654 344332 2222222111 12211110 01111222110
Q ss_pred -----------CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc-------CChHHHHHH
Q 010881 252 -----------EL-----DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH-------DQSASAIEL 308 (498)
Q Consensus 252 -----------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------~~~~~a~~~ 308 (498)
-| -+..--.|+-.|.+.+++.+|..+.+.+...++.-|-.-.-.++.. ....-|.+.
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 01 1122333455667888888888888877654433222211122222 234455566
Q ss_pred HHHHHHcCCCCCc------------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-
Q 010881 309 FMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE- 362 (498)
Q Consensus 309 ~~~m~~~~~~p~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~- 362 (498)
|.-.-+.+...|. .-.+.+ +..|...-..+.++++..|.+.+|+++|-++ +.+
T Consensus 346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 6554444443332 001111 1112222234677888889999999999888 322
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC-CCCc-hHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 363 PDNYVLGAL-LNACRVHGDVDLGKETVESLVERS-LDHE-GVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 363 p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.|..+|.++ .++|.++++++.|.+++ ++.+ |.+. .....+++-|.+.+.+=-|.+.|+.+...+.
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 356666554 45778888888776655 3333 3332 2344667788888888888888887766554
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=8.2e-07 Score=86.15 Aligned_cols=263 Identities=10% Similarity=0.028 Sum_probs=170.2
Q ss_pred HHHHccCCHHHHHHHHhhCCCC--C-hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c--
Q 010881 162 NGYAKSGQISIARQMFDKMPEK--N-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA----F-- 232 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~-- 232 (498)
..+...|++++|++.+++-... | ..........+.+.|+.++|..+|..+.+. .|+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 3445667777777777665432 3 344556677788888888888888888876 466666655555444 1
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH-HHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHH
Q 010881 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE-TACSVFDSMPNRDV-FAYTSLISGLANHDQSASAIELFM 310 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 310 (498)
..+.+....+++.+...- |.......+.-.+.....+. .+...+..+..+.+ .+|+.|-..|....+..-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 124566677777665543 33322222222222222232 23334444444444 455555555555555555555555
Q ss_pred HHHHc----CCCCCchhhhhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 010881 311 RMQLE----GVVPNESMSEIYGIEPGV--QHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVD 382 (498)
Q Consensus 311 ~m~~~----~~~p~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 382 (498)
..... +-.+... ..-.-.|+. .++..+...|-..|++++|++++++. ...|+ +..|..-...+...|+++
T Consensus 168 ~~~~~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55432 1111100 000123444 34567788899999999999999988 55674 778888888999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 383 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
+|.+.++.+.++++.+-..-.-.+..+.+.|+.++|.+++..+-..+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999987777889999999999999999988876664
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.1e-06 Score=72.22 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=140.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 010881 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136 (498)
Q Consensus 58 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (498)
+.+..+.+..+++.|++++..-.+.. | +....+.|..+|....++..|...++++-...++....-+ --...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl-Y~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL-YQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH-HHHHHHHHh
Confidence 33334444444444444444443321 2 3333444444444444444454444444443222111111 011223334
Q ss_pred CChhhHHHHhhccCCC-ChhhHHHHHH--HHHccCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881 137 NCMDPARKLFDMSVNR-DVISWTSLIN--GYAKSGQISIARQMFDKMPE-KNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 137 g~~~~a~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
+.+.+|.++...|... +...-..-+. ..-..+|+..+..+.++.+. .+..+.+.......+.|+++.|.+-|+...
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 4444444444444332 1111111111 11234455555555555542 333444444444445555555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-------------CC---------------hhHHHHHHHH
Q 010881 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-------------LD---------------IILGTAIIDM 264 (498)
Q Consensus 213 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~---------------~~~~~~l~~~ 264 (498)
+-+---....|+..+. ..+.++.+.|.+...++.++|+. || +..+|.-...
T Consensus 172 qvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAI 250 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAI 250 (459)
T ss_pred hhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhh
Confidence 4332222334443332 23345555555555555554431 11 1223333344
Q ss_pred HHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881 265 YAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l 339 (498)
+.+.|+++.|.+.+..|+.+ |++|...+.-.- ..+++.+..+-+.-++..+.. ..+||..+
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-------------P~ETFANl 316 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-------------PPETFANL 316 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-------------ChHHHHHH
Confidence 56789999999999999853 677766553221 234555556556556554333 35899999
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 010881 340 VDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~ 359 (498)
+-.||+..-++.|-.++-+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 99999999999999988764
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=2.6e-06 Score=82.04 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=96.3
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010881 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273 (498)
Q Consensus 194 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (498)
+......|.+|+.+++.++.... -..-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34455667777777776665432 2234556667777777777777776432 244556777778888888
Q ss_pred HHHHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH
Q 010881 274 ACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351 (498)
Q Consensus 274 A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 351 (498)
|.++-.+...| .+..|-+-..-+-.+|++.+|.++|-.+.. |+ ..|.+|-+.|..+.
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----------------~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----------------KAIQMYDKHGLDDD 868 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----------------HHHHHHHhhCcchH
Confidence 77777766654 334555555556667777777766644311 22 13555666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881 352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES 390 (498)
Q Consensus 352 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (498)
.+++..+..-..-..|...+..-+...|++..|+..|-+
T Consensus 869 mirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 869 MIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 666655541112233444555556666666666655543
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=1.7e-07 Score=79.81 Aligned_cols=148 Identities=9% Similarity=0.098 Sum_probs=115.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD 341 (498)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 341 (498)
+-.|...|+++.+....+.+..+. ..+...++.+++...++...+. .|+ +...|..+..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~-----------~~~~w~~Lg~ 81 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQ-----------NSEQWALLGE 81 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHH
Confidence 446777888777655544332221 0122356677787778777764 344 6899999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881 342 LLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNAC-RVHGD--VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (498)
.|...|++++|...|++. .+.| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|+++
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Confidence 999999999999999998 5566 677777777764 67777 599999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhCCc
Q 010881 417 GVEKVRRGMEDNEV 430 (498)
Q Consensus 417 ~a~~~~~~m~~~~~ 430 (498)
+|+..|+++.+...
T Consensus 162 ~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 162 QAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999987554
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=1.4e-07 Score=76.02 Aligned_cols=120 Identities=9% Similarity=-0.014 Sum_probs=85.6
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 010881 278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357 (498)
Q Consensus 278 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 357 (498)
|++..+-++..+..+...+...|++++|...|+..... .|+ +...|..+..++...|++++|...|+
T Consensus 16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPW-----------SWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333334444555666777788888888888887663 333 57778888888888888888888888
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881 358 EM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410 (498)
Q Consensus 358 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (498)
+. ...| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77 4445 67777778888888888888888888888888888777766655443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=4.7e-05 Score=81.94 Aligned_cols=404 Identities=11% Similarity=-0.066 Sum_probs=233.5
Q ss_pred HhHHHHHHHHhCCC--C-C----hhHHHHHHHHhhcCCC--CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHH
Q 010881 4 IKQIQSHLTVSGTL--W-D----PFAVGKIIGFCSASDI--GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFA 74 (498)
Q Consensus 4 ~~~~~~~~~~~g~~--~-~----~~~~~~l~~~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 74 (498)
+.++.+.+.+.|+- + + -+.++.|+.-+.+... .+.+....+ +......+...|++.+|..
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~~Al~ 362 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPSEAIH 362 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHHHHHH
Confidence 45677777777751 1 1 2446666665554300 122222222 2333445556667666665
Q ss_pred HHHHhHHCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC---
Q 010881 75 LYKQMLRSDFLPN-NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV--- 150 (498)
Q Consensus 75 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 150 (498)
....... .+. ..............|+++.+..+++.+-......+..........+...|+++++...++...
T Consensus 363 ~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~ 439 (903)
T PRK04841 363 HALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQEL 439 (903)
T ss_pred HHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 4433311 100 001111222344556776666666554221111222233344455566788888777775432
Q ss_pred -CCC---h-----hhHHHHHHHHHccCCHHHHHHHHhhCCC----CC----hhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 151 -NRD---V-----ISWTSLINGYAKSGQISIARQMFDKMPE----KN----AVSWSAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 151 -~~~---~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
..+ . .....+...+...|+++.|...++.... .+ ....+.+...+...|++++|...+.+...
T Consensus 440 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 440 KDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred cccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 1 1112223345578888888888776532 12 12345566677889999999999888764
Q ss_pred cCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 214 CGF---RP--NHAGIVGALTACAFLGALDQGRWIHAYVDRN----GIEL---DIILGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 214 ~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
..- .+ ...++..+...+...|+++.|...+++.... +... ....+..+...+...|++++|...+...
T Consensus 520 ~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 520 MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 311 11 1234445566677889999999888776542 2111 1233445566777789999999888876
Q ss_pred CC------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-H-HHHHHHHHHhhcCCHHH
Q 010881 282 PN------R--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-Q-HYGCLVDLLGRAGMLEA 351 (498)
Q Consensus 282 ~~------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~~ 351 (498)
.. + ....+..+...+...|+.++|...+.+........ +..... . .-...+..+...|+.+.
T Consensus 600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--------RYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--------cccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 43 1 12344456667888999999999998886531000 000000 0 01112344556899999
Q ss_pred HHHHHHhC-CCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchHHHHHHHHhHhcCCcchHH
Q 010881 352 AKKVVREM-PIE-PDN----YVLGALLNACRVHGDVDLGKETVESLVERSL------DHEGVHVLLSNIYASTEQWNGVE 419 (498)
Q Consensus 352 A~~~~~~~-~~~-p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~ 419 (498)
|...+... ... ... ..+..+..++...|++++|...++++..... ....+...++.++.+.|+.++|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998876 211 111 1134566778899999999999999887421 12235667888999999999999
Q ss_pred HHHHhhhhCC
Q 010881 420 KVRRGMEDNE 429 (498)
Q Consensus 420 ~~~~~m~~~~ 429 (498)
..+.+..+..
T Consensus 752 ~~L~~Al~la 761 (903)
T PRK04841 752 RVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.8e-05 Score=75.16 Aligned_cols=193 Identities=10% Similarity=-0.011 Sum_probs=111.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Ch--hHHHHHHHHHH
Q 010881 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DV--FAYTSLISGLA 297 (498)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~ 297 (498)
.+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...+++.... +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666666654 444556666777777777777777777765531 11 23445666777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH-H--HHHHHHhhcCCHHHHHHH---HHhC-C---CCCCHHH
Q 010881 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY-G--CLVDLLGRAGMLEAAKKV---VREM-P---IEPDNYV 367 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~---~~p~~~~ 367 (498)
..|++++|..++++.......+. ..... + .++.-+...|..+.+.+. .... + .......
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~ 266 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESD-----------PALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFN 266 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCC-----------hHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHH
Confidence 78888888888877643211001 11111 1 222223333322222221 1111 1 1111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVERSLD---------HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
......++...|+.+.|...++.+....-. ........+.++...|++++|.+.+......+
T Consensus 267 ~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 267 DLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234666778899999999999988763311 23344566677889999999999998887654
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.9e-05 Score=77.64 Aligned_cols=202 Identities=14% Similarity=0.149 Sum_probs=152.6
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
.+..|..+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-.+++....+..-.|.. -+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3467888888888888888888877543 35567889999999999999999999888877655544 467889
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343 (498)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 343 (498)
+|++.+++.+.++++ ..||..-...+..-|...+.++.|.-+|.. +..|..|...+
T Consensus 1175 AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------------------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------------------VSNFAKLASTL 1230 (1666)
T ss_pred HHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------------------hhhHHHHHHHH
Confidence 999999988877664 357777788888889999999888877765 45688899999
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchHHHHHHHHhHhcCCcchHHHHH
Q 010881 344 GRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS-LDHEGVHVLLSNIYASTEQWNGVEKVR 422 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (498)
...|++..|.+.-++. .+..+|..+-.+|...+.+.-|. +..++ .-+..-...++..|-..|-++|.+.++
T Consensus 1231 V~LgeyQ~AVD~aRKA---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHhhhc---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999888775 35778988888898777665442 33322 112333556777777777777777766
Q ss_pred Hhh
Q 010881 423 RGM 425 (498)
Q Consensus 423 ~~m 425 (498)
+..
T Consensus 1303 Ea~ 1305 (1666)
T KOG0985|consen 1303 EAG 1305 (1666)
T ss_pred Hhh
Confidence 544
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=4.4e-05 Score=72.50 Aligned_cols=194 Identities=11% Similarity=-0.051 Sum_probs=86.6
Q ss_pred HHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccC
Q 010881 161 INGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNH--AGIVGALTACAFLG 234 (498)
Q Consensus 161 i~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~ 234 (498)
...+...|++++|...+++..+ | +...+..+...+...|++++|...+++...... .|+. ..+..+...+...|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 3445555555555555555442 1 334455555555666666666666655554321 1121 12334445555566
Q ss_pred ChHHHHHHHHHHHHhCC-CCChhHH-H--HHHHHHHhcCC------HHHHHHHHhhCCCCChhHHH--HHHHHHHhcCCh
Q 010881 235 ALDQGRWIHAYVDRNGI-ELDIILG-T--AIIDMYAKCGC------IETACSVFDSMPNRDVFAYT--SLISGLANHDQS 302 (498)
Q Consensus 235 ~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~ 302 (498)
++++|..+++....... .+..... + .++.-+...|. ++.+..............+. ....++...|+.
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 66666666655532211 0111111 1 11222222222 11111111111011112222 355567778889
Q ss_pred HHHHHHHHHHHHcCCCCCchhhhhhCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 303 ASAIELFMRMQLEGVVPNESMSEIYGI-EPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
++|..++..+......++. .+. ...........-++...|+.++|.+.+...
T Consensus 281 ~~a~~~L~~l~~~~~~~~~-----~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 281 DALDKLLAALKGRASSADD-----NKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHHHHHHHHHHHHhccCc-----hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999888664211000 000 001222223333445677777777776643
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=3.8e-06 Score=83.69 Aligned_cols=388 Identities=10% Similarity=-0.032 Sum_probs=217.6
Q ss_pred HHHHHHHhCCCCCh-hHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 010881 7 IQSHLTVSGTLWDP-FAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS 82 (498)
Q Consensus 7 ~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 82 (498)
++..+....+.|+. ..|..|-..|+.. .+...|.+.|++..+ .+..++......|++..+++.|..+.-..-+.
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 33344444444443 5677777777777 677777777776543 35667777777788888888777773322221
Q ss_pred CCCCCcch--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHH--
Q 010881 83 DFLPNNYT--FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWT-- 158 (498)
Q Consensus 83 ~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 158 (498)
. +.-... |..+--.|.+.++...+..-|+...+..|. |...|..+..+|..+|.+..|.++|.+....++.++.
T Consensus 556 a-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 556 A-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred c-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 1 001111 222222355667777777777777776533 6667777788888888888888888665543333221
Q ss_pred -HHHHHHHccCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHH-------cCCCCCH
Q 010881 159 -SLINGYAKSGQISIARQMFDKMPEK----------NAVSWSAMINGYVQVDLFKEALEHFNYMQL-------CGFRPNH 220 (498)
Q Consensus 159 -~li~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~g~~p~~ 220 (498)
...-..+..|.+.+|...+..+... -..++-.+...+...|-..+|..++++-.+ .....+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 1222345567777777776655421 112222222223333333333333333222 1111111
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH---H---HHHHHHhhCC--CCChhHHHHH
Q 010881 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI---E---TACSVFDSMP--NRDVFAYTSL 292 (498)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~--~~~~~~~~~l 292 (498)
..+..+- .|..+|.... .+ .|+......|..-.-..+.. + -+.+.+-.-. ..+..+|..|
T Consensus 714 ~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNL 781 (1238)
T KOG1127|consen 714 LQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNL 781 (1238)
T ss_pred HHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHH
Confidence 1111111 1222222222 11 22222222222211122211 1 1111111101 1245677777
Q ss_pred HHHHHh----c----CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 010881 293 ISGLAN----H----DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIE 362 (498)
Q Consensus 293 i~~~~~----~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 362 (498)
+..|.+ . .+...|...+.+..+. ..| +..+|+.|.-. ...|.+.-|...|-+- ..+
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L--~an-----------n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep 847 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSL--CAN-----------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP 847 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhc-----------cHHHHHHHHHh-hccchhhhhhhhhhhhhhccc
Confidence 666554 1 2234677777776653 112 46667766555 6668888888887665 333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG 424 (498)
Q Consensus 363 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (498)
.+..+|..+...|....+++.|...|.....+.|.+...+...+.+....|+.-+...+|..
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999998888888888888988888888766
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=3.5e-07 Score=73.67 Aligned_cols=95 Identities=6% Similarity=-0.192 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
.+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++.+|+++.++..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4666788899999999999999998 5566 7888999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHhhhhCC
Q 010881 413 EQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 413 g~~~~a~~~~~~m~~~~ 429 (498)
|++++|+..+++..+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987654
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=6.9e-07 Score=79.28 Aligned_cols=166 Identities=15% Similarity=-0.006 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD-V---FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326 (498)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 326 (498)
.....+..+...+...|+++.|...|+++.. |+ . .++..+..++...|++++|...++++.+. .|+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~----- 103 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNH----- 103 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCC-----
Confidence 3455667777788889999999998887764 32 2 36677888899999999999999999874 3431
Q ss_pred hCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcC
Q 010881 327 YGIEPGVQHYGCLVDLLGRA--------GMLEAAKKVVREM-PIEPDN-YVL-----------------GALLNACRVHG 379 (498)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g 379 (498)
.....++..+..++... |+.++|.+.++++ ...|+. ..+ ..+...+...|
T Consensus 104 ---~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 104 ---PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred ---CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00122455556666554 7899999999988 434532 222 13455678889
Q ss_pred CHHHHHHHHHHHHhcCCCC---chHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 380 DVDLGKETVESLVERSLDH---EGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
++++|...++.+++..|+. +..+..++.++...|++++|..+++.+..+
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999987764 467889999999999999999999888654
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=2.7e-06 Score=85.86 Aligned_cols=139 Identities=6% Similarity=0.005 Sum_probs=91.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 328 (498)
+.++..+-.|..+..+.|++++|..+++.+.+ | +......+...+.+.+++++|+..+++.... .|+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~-------- 152 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSS-------- 152 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCC--------
Confidence 44566666777777777777777777776654 3 3445666666777777777777777777663 344
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
+......+..++...|++++|..+|+++ .-.| +..++..+..++...|+.++|...|+++++...+-...|.
T Consensus 153 ---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 153 ---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred ---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 4666667777777777777777777776 2233 3666677777777777777777777777765533333333
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.4e-05 Score=68.96 Aligned_cols=390 Identities=14% Similarity=0.036 Sum_probs=237.1
Q ss_pred CCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchH
Q 010881 15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTF 91 (498)
Q Consensus 15 g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 91 (498)
|+.....-+.+.+....+. .++++|.+++..-.+ ++....+.|...|-...++..|-..|+++-. ..|...-|
T Consensus 5 g~~i~EGeftaviy~lI~d--~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qY 80 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRD--ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQY 80 (459)
T ss_pred cccCCCCchHHHHHHHHHH--hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHH
Confidence 3333333345555555666 789999999876543 3666788888889999999999999999977 55766666
Q ss_pred HHH-HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhCCChhhHHHHhhccC-CCChhhHHHHHHHHHcc
Q 010881 92 SFI-LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL--HLYATCNCMDPARKLFDMSV-NRDVISWTSLINGYAKS 167 (498)
Q Consensus 92 ~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~ 167 (498)
... ...+.+.+.+..|+++...|... ++...-..-+ ......+++..+..++++.. +.+..+.+.......+.
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence 543 35567788899999998887642 2221111112 22345688889999999988 46777777777778899
Q ss_pred CCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-------------CCHH--------H
Q 010881 168 GQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR-------------PNHA--------G 222 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------p~~~--------~ 222 (498)
|+.+.|.+-|+...+- ....||.-+ +..+.|++..|++...++.++|++ ||.. .
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 9999999999988753 455666544 566789999999999999887653 1211 1
Q ss_pred HHHHHHH-------HhccCChHHHHHHHHHHHHh-CCCCChhHHHH--HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH
Q 010881 223 IVGALTA-------CAFLGALDQGRWIHAYVDRN-GIELDIILGTA--IIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292 (498)
Q Consensus 223 ~~~ll~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 292 (498)
-+.++.+ +.+.++.+.|.+.+-.|.-+ ....|+.|... +.++=.+-++--.-++++-.+..-...||..+
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHH
Confidence 2223333 35668888888887776432 22345555543 33332222222222333333322345789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhC-CC-CCCHHHHH
Q 010881 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR-AGMLEAAKKVVREM-PI-EPDNYVLG 369 (498)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~-~p~~~~~~ 369 (498)
+-.||++.-++-|-.++.+-...-. .-.+...|+ |++++.. .-..++|.+-+..+ +. .-......
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTy-----------k~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklA 384 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTY-----------KFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLA 384 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhH-----------HHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888766322100 001223333 3344433 34566666655544 10 00001111
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 370 ALLNACRVHGD---VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 370 ~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.-+.--...++ ...|++-|++.+++-. .+....+++|.+..++..+.++|..-.+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11111111111 2233444555554432 1456778899999999999999976654
No 106
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=1.3e-05 Score=73.36 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=154.5
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHA-GIVGALTACAFLG-ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (498)
.+-..+...++.++|+..+.++.+. .|+.. .++.--..+...+ +++++...++.+.+.. +.+..+|+.-...+.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3334455667788888888888764 45544 3443334444555 5788888888888775 5566677765555556
Q ss_pred cCCH--HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881 268 CGCI--ETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342 (498)
Q Consensus 268 ~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 342 (498)
.|+. +++..+++++.+ +|..+|+...-.+...|+++++++.+.++++.+ |+ +...|+....+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~-----------N~sAW~~R~~v 185 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VR-----------NNSAWNQRYFV 185 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CC-----------chhHHHHHHHH
Confidence 6653 667777777664 567788888888888999999999999998864 22 45777777666
Q ss_pred Hhhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 343 LGRA---GML----EAAKKVVREM-PIEP-DNYVLGALLNACRVH----GDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 343 ~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+.+. |.. +++.++..++ ...| |...|+.+...+... ++..+|.+.+.++...+|.++.+...|+..|
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLL 265 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 6554 222 4566666555 5566 777888888877763 3456799999999888999988899999999
Q ss_pred HhcC------------------CcchHHHHHHhhh
Q 010881 410 ASTE------------------QWNGVEKVRRGME 426 (498)
Q Consensus 410 ~~~g------------------~~~~a~~~~~~m~ 426 (498)
+... ..++|.++++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 266 CEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8743 2355777777773
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1e-06 Score=84.92 Aligned_cols=215 Identities=14% Similarity=0.050 Sum_probs=175.5
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881 189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268 (498)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (498)
..+...+...|-..+|..+|++... +..++.+|...|+..+|..+..+..+ -+|+...|..+.+..-..
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 3566778888999999999988753 45678888899999999988887776 378999999998888777
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC
Q 010881 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM 348 (498)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 348 (498)
.-+++|+++++....+ +-..+.....+.+++.++.+.|+.-.+.+ | ....+|..+..+..+.++
T Consensus 471 s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n--p-----------lq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN--P-----------LQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC--c-----------cchhHHHhccHHHHHHhh
Confidence 7789999998876543 11222222344789999999998877642 1 246789999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 349 LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 349 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
+..|.+.|... ...| +...||.+-.+|.+.++-.+|...++++++.+-++...+....-...+.|.|++|.+.+.++.
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999887 6677 578999999999999999999999999999998888888888889999999999999999997
Q ss_pred hCCc
Q 010881 427 DNEV 430 (498)
Q Consensus 427 ~~~~ 430 (498)
+...
T Consensus 615 ~~~~ 618 (777)
T KOG1128|consen 615 DLRK 618 (777)
T ss_pred Hhhh
Confidence 6543
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=4.1e-06 Score=71.21 Aligned_cols=151 Identities=11% Similarity=0.144 Sum_probs=111.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHH
Q 010881 259 TAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH 335 (498)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~ 335 (498)
..+-..+...|+-+....+...... .|......++....+.|++..|...+++.... .| +|..+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p-----------~d~~~ 136 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--AP-----------TDWEA 136 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CC-----------CChhh
Confidence 4555666667777766666666432 34445555777788888888888888887663 33 36888
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (498)
|+.+.-+|.+.|++++|..-|.+. .+.| ++..++.+...+.-.|+.+.|..++.......+.++.+-..|+.+....|
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQG 216 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcC
Confidence 888888888888888888888777 4445 56667778888888888888888888888777777777778888888888
Q ss_pred CcchHHHHH
Q 010881 414 QWNGVEKVR 422 (498)
Q Consensus 414 ~~~~a~~~~ 422 (498)
++++|..+.
T Consensus 217 ~~~~A~~i~ 225 (257)
T COG5010 217 DFREAEDIA 225 (257)
T ss_pred ChHHHHhhc
Confidence 888887765
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=7.5e-05 Score=73.32 Aligned_cols=202 Identities=9% Similarity=0.013 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC-----------CCc-chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 010881 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY-----------RTT-FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP 86 (498)
Q Consensus 19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 86 (498)
+..+|..+.++|.+. .+++-|.-.+-.|.+ .|. ..=....-.....|-+++|..+|.+-..
T Consensus 756 S~~vW~nmA~McVkT--~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKT--RRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhHHHHHHHHHhhhh--ccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 567899999999998 888888887777752 121 2222222233467899999999998876
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---------------
Q 010881 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--------------- 151 (498)
Q Consensus 87 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------- 151 (498)
|..+-..|...|.+++|.++-+.--+.. -..||.....-+-..++.+.|++.|++.-.
T Consensus 829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 4455567788899999998766543322 235666666777778889999998875321
Q ss_pred --------CChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881 152 --------RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223 (498)
Q Consensus 152 --------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 223 (498)
.|...|.-....+-..|+.+.|+.+|..... |-++++..|-.|+.++|-++-++ .-|....
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAc 970 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTDKAARIAEE------SGDKAAC 970 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCchHHHHHHHh------cccHHHH
Confidence 2444444455556678999999999887653 33444444444555555444332 1233333
Q ss_pred HHHHHHHhccCChHHHHHHHHH
Q 010881 224 VGALTACAFLGALDQGRWIHAY 245 (498)
Q Consensus 224 ~~ll~~~~~~~~~~~a~~~~~~ 245 (498)
..+...|-..|++.+|..+|-+
T Consensus 971 YhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 3444444444444444444433
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=7.7e-08 Score=55.24 Aligned_cols=32 Identities=38% Similarity=0.661 Sum_probs=22.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 250 GIELDIILGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=0.0001 Score=71.46 Aligned_cols=259 Identities=13% Similarity=0.147 Sum_probs=151.2
Q ss_pred HHHHhCCChhhHHHHhhccCCCCh--hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881 131 HLYATCNCMDPARKLFDMSVNRDV--ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208 (498)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (498)
.+......+.+|+.+++.+...++ .-|..+...|+..|+++.|+++|-+.. .++-.|..|.+.|+|+.|.++-
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 344456677777777776665543 336677778888888888888887653 4566677888888888888876
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh
Q 010881 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVF 287 (498)
Q Consensus 209 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 287 (498)
.+.. |.......|..-..-.-..|++.+|.++|-.+. .|+ ..|.+|-+.|..++.+++.++-.. .-..
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 6553 333444455555555566777777777653322 233 345667777777777777665432 1223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY- 366 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~- 366 (498)
|...+..-|-..|+...|..-|-+.. -|.+-+++|-..+.+++|.++-+.-|- .|..
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~---------------------d~kaavnmyk~s~lw~dayriaktegg-~n~~k 941 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG---------------------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEK 941 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh---------------------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHH
Confidence 45555666666777777766554432 244455566666666666655544310 1111
Q ss_pred ----HH-------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHH
Q 010881 367 ----VL-------------------GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 367 ----~~-------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (498)
.| ..-+.-.+..+-++-|.++-+-..+.. .+.+...++-.+...|++++|.+-+-
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhH
Confidence 11 111122233344444444443333222 23356677778888899988877766
Q ss_pred hhhhCC
Q 010881 424 GMEDNE 429 (498)
Q Consensus 424 ~m~~~~ 429 (498)
+..+.+
T Consensus 1020 eaikln 1025 (1636)
T KOG3616|consen 1020 EAIKLN 1025 (1636)
T ss_pred HHhhcc
Confidence 665543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00015 Score=78.21 Aligned_cols=316 Identities=10% Similarity=-0.058 Sum_probs=197.2
Q ss_pred CChhHHHHHhhhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC--CC----CCCcc--hHHHHHHHHHccCC
Q 010881 36 GDLSHGYRLFVCLQY----RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS--DF----LPNNY--TFSFILRACADTSC 103 (498)
Q Consensus 36 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~----~p~~~--~~~~ll~~~~~~g~ 103 (498)
|+++.+...++.++. .+..........+...|++++|...+...... .. .|... ....+...+...|+
T Consensus 388 g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 467 (903)
T PRK04841 388 GELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGD 467 (903)
T ss_pred CChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCC
Confidence 666767777766641 23333334444556788999999888877542 11 01111 11122234567899
Q ss_pred cHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhCCChhhHHHHhhccCC-------CC--hhhHHHHHHHHHccCCH
Q 010881 104 LFVGLICHAQVIRLGWESYD----FVLNGLLHLYATCNCMDPARKLFDMSVN-------RD--VISWTSLINGYAKSGQI 170 (498)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~ 170 (498)
++.|...+++..+.-...+. ...+.+...+...|++++|...+++... +. ..++..+...+...|++
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL 547 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence 99999999888764222221 2345566677789999999888876542 11 23445566677889999
Q ss_pred HHHHHHHhhCCC-------C----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhccCC
Q 010881 171 SIARQMFDKMPE-------K----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG--FRPN--HAGIVGALTACAFLGA 235 (498)
Q Consensus 171 ~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~ 235 (498)
+.|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+.......|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 999888776532 1 12234455566777899999999888875431 1122 2334445556678899
Q ss_pred hHHHHHHHHHHHHhCCCCC-hhHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCh-------hHHHHHHHHHHhcCCh
Q 010881 236 LDQGRWIHAYVDRNGIELD-IILG-----TAIIDMYAKCGCIETACSVFDSMPNRDV-------FAYTSLISGLANHDQS 302 (498)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~ 302 (498)
.+.|...+.......-... ...+ ...+..+...|+.+.|...+.....+.. ..+..+..++...|+.
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 9999988887754311111 1111 1122445568899999999877654321 1134566678889999
Q ss_pred HHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 303 ASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
++|...+.+..... ...+..+ ...+...+..++.+.|+.++|...+.+.
T Consensus 708 ~~A~~~l~~al~~~--------~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 708 DEAEIILEELNENA--------RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHHHHH--------HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999887641 0112222 2456677788888999999999988877
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=7.9e-06 Score=84.25 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=157.8
Q ss_pred CCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-hhHH
Q 010881 217 RPNH-AGIVGALTACAFLGALDQGRWIHAYVDRN-GIEL---DIILGTAIIDMYAKCGCIETACSVFDSMPNR-D-VFAY 289 (498)
Q Consensus 217 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~ 289 (498)
.||+ ..|...|......++.+.|+.+.+++... ++.- -..+|.++++.-..-|.-+...++|+++.+- | ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3443 45666777777888888888888777653 1111 1257777887777778888888999988862 3 4568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH
Q 010881 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP---DN 365 (498)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~ 365 (498)
..|...|.+.+.+++|.++++.|.++ +......|...++.+.+.++-+.|..+++++ ..-| ..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-------------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-------------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-------------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 88888999999999999999999875 2245788999999999999999999999887 2223 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 431 (498)
......+..-.+.|+.+++..+|+..+...|.....|..++..-.+.|+.+.+..+|++....++.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 455566667788899999999999999999998889999999999999999999999999887765
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=1.1e-07 Score=54.61 Aligned_cols=32 Identities=38% Similarity=0.582 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677888888888888888888888888876
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=4.4e-05 Score=65.09 Aligned_cols=216 Identities=10% Similarity=0.005 Sum_probs=142.4
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKC 268 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (498)
.+-++|...|.+.....- .... -.|....+..+-......++.+.-. .+.+.+.......+......-...|+..
T Consensus 46 y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~ 121 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD 121 (299)
T ss_pred HHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence 344566666655433322 1111 1333333333333333334433333 3344444444444444444455678889
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh---
Q 010881 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR--- 345 (498)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~--- 345 (498)
|++++|.+.+.... +......=...+.+..+.+-|.+.+++|.+-. +..|.+.|..++.+
T Consensus 122 ~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---------------ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 122 GDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---------------EDATLTQLAQAWVKLAT 184 (299)
T ss_pred CChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------------hHHHHHHHHHHHHHHhc
Confidence 99999999988833 33333333445667788899999999997742 35666767666654
Q ss_pred -cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH-HH
Q 010881 346 -AGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE-KV 421 (498)
Q Consensus 346 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~ 421 (498)
.+.+..|.-+|++| ...|+..+.+....++...|++++|..+++.++..++.++.+...++-.--..|.-.++. +.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 45789999999999 478899999999999999999999999999999999999988888887777778776654 34
Q ss_pred HHhhh
Q 010881 422 RRGME 426 (498)
Q Consensus 422 ~~~m~ 426 (498)
+...+
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44444
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1e-05 Score=76.23 Aligned_cols=240 Identities=18% Similarity=0.103 Sum_probs=170.5
Q ss_pred HHHhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHH
Q 010881 132 LYATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEAL 205 (498)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~ 205 (498)
-+.+.|++.+|.-.|+..+.. +..+|..|....+..++-..|+..+.+..+- |....-.|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356778888888888887654 4568888888888888888888888887653 5666667777888999999999
Q ss_pred HHHHHHHHcCCCC--------CHHHHHHHHHHHhccCChHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010881 206 EHFNYMQLCGFRP--------NHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACS 276 (498)
Q Consensus 206 ~~~~~m~~~g~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 276 (498)
..++.-.....+- +..+-.. ..+.....+....++|-++ ...+..+|..+...|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9998876542110 0000000 1111222234444555444 445555888899999999999999999999
Q ss_pred HHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 010881 277 VFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353 (498)
Q Consensus 277 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 353 (498)
.|+.+.. | |...||.|...++...+.++|+..|.+.++ ++|+ =+++...|.-.|...|.+++|.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~-----------yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPG-----------YVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCC-----------eeeeehhhhhhhhhhhhHHHHH
Confidence 9998764 3 778999999999999999999999999987 4565 2677778888999999999998
Q ss_pred HHHHhC-CC-----------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 010881 354 KVVREM-PI-----------EPDNYVLGALLNACRVHGDVDLGKE 386 (498)
Q Consensus 354 ~~~~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~ 386 (498)
..|-.. .+ .++...|..|=.++...++.|.+.+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 887654 10 1123456665555555565554433
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.1e-05 Score=68.76 Aligned_cols=122 Identities=10% Similarity=0.078 Sum_probs=93.5
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH-
Q 010881 268 CGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL- 343 (498)
Q Consensus 268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~- 343 (498)
.++.+++...++...+ .|...|..|...|...|++++|...|++..+. .|+ +...+..+..++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~-----------~~~~~~~lA~aL~ 118 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGE-----------NAELYAALATVLY 118 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHH
Confidence 4555666666665443 46778888888888888889999888888774 454 578888888864
Q ss_pred hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 344 GRAGM--LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 344 ~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++++..|.+..-+
T Consensus 119 ~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 119 YQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 66676 58999999988 5556 677888888889999999999999999999887765433
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.53 E-value=2.5e-06 Score=67.57 Aligned_cols=97 Identities=7% Similarity=-0.040 Sum_probs=87.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+....-.+...+...|++++|..+|+-+ -+.| +..-|..|..+|...|++++|+..|.++..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556666777888999999999999998 5566 6778888999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhC
Q 010881 410 ASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~ 428 (498)
...|+.+.|.+.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888754
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=7.2e-05 Score=75.00 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCC-----cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH
Q 010881 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-----TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93 (498)
Q Consensus 19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 93 (498)
+...+..+...|++. .+++.|..+.-...+.+ .+.|-...-.|.+.++...|+.-|+....... -|...|..
T Consensus 525 daeaaaa~adtyae~--~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~g 601 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEE--STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLG 601 (1238)
T ss_pred hhhhHHHHHHHhhcc--ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHH
Confidence 456667777888888 88888877744332211 11122222234444445555555544444211 13444455
Q ss_pred HHHHHHccCCcHHHHHHHHHHHH
Q 010881 94 ILRACADTSCLFVGLICHAQVIR 116 (498)
Q Consensus 94 ll~~~~~~g~~~~a~~~~~~~~~ 116 (498)
+..+|.+.|++..|.++|.++..
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh
Confidence 55555555555555555544443
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=5.6e-05 Score=77.37 Aligned_cols=180 Identities=11% Similarity=0.033 Sum_probs=109.5
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (498)
++.......++.-+..++..|... .-+...+..+..+|.+.|+.+++..+|+++.+.. +-|+.+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 334444444554444444444442 2233456666667777777777777777777766 66777778888888777 8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881 271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350 (498)
Q Consensus 271 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 350 (498)
+++|...+.+.. ..+...+++..+.++|.++... .|+ +...+..+.......
T Consensus 165 L~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~-----------d~d~f~~i~~ki~~~---- 216 (906)
T PRK14720 165 KEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSD-----------DFDFFLRIERKVLGH---- 216 (906)
T ss_pred HHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--Ccc-----------cchHHHHHHHHHHhh----
Confidence 888888776643 3366677888888888888774 222 222222222221111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881 351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410 (498)
Q Consensus 351 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (498)
.+...-..++-.+...|...++++++..+++.+++.+|.+..+...++..|.
T Consensus 217 --------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 --------REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --------hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1222334455556666777777777777777777777777766666666665
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00012 Score=61.99 Aligned_cols=192 Identities=13% Similarity=0.086 Sum_probs=143.5
Q ss_pred CCCHhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010881 198 VDLFKEALEHFNYMQL---CG-FRPNHAG-IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 272 (498)
..+.++..+++.++.. .| ..++..+ |-.++-+....++.+.|...++.+.+.- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4567888888887764 33 4555543 4456667778899999999999988764 444444333333455689999
Q ss_pred HHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH
Q 010881 273 TACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349 (498)
Q Consensus 273 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 349 (498)
+|.++++.+.+. |.+++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+.+.|...|++
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-------------F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-------------FMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------------hcCcHHHHHHHHHHHHhHhHH
Confidence 999999999864 4556776677777788888999988888874 344799999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchHHH
Q 010881 350 EAAKKVVREM-PIEP-DNYVLGALLNACRVHG---DVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 350 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
++|.-.++++ -..| ++..+..+...+.-.| +..-|.+.|.+++++.|.+...+.
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 9999999998 4456 6666667776654444 678899999999999996654444
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0014 Score=61.70 Aligned_cols=390 Identities=10% Similarity=0.067 Sum_probs=231.7
Q ss_pred CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH
Q 010881 17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--R-TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93 (498)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 93 (498)
+.|..+|+.||+-+... ..+++++.++++.. | ....|..-|+.-.+.++++....+|.+.+.+-+ +...|..
T Consensus 17 P~di~sw~~lire~qt~---~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ---PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC---CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 45789999999977664 79999999999874 3 566899999999999999999999999877433 4666666
Q ss_pred HHHHHHc-cCCcHHH----HHHHHHHH-HhCCCC-chhHHHHHHHH---------HHhCCChhhHHHHhhccCC-C----
Q 010881 94 ILRACAD-TSCLFVG----LICHAQVI-RLGWES-YDFVLNGLLHL---------YATCNCMDPARKLFDMSVN-R---- 152 (498)
Q Consensus 94 ll~~~~~-~g~~~~a----~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~-~---- 152 (498)
.|.-..+ .++...+ .+.|+-.+ +.|..+ +-..|+..+.. |....+++...++|+++.. |
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 6654332 2333333 23344333 345433 22345555543 2333466778888887653 2
Q ss_pred -----ChhhHHHHHHHH-------HccCCHHHHHHHHhhCCC-------------------------------------C
Q 010881 153 -----DVISWTSLINGY-------AKSGQISIARQMFDKMPE-------------------------------------K 183 (498)
Q Consensus 153 -----~~~~~~~li~~~-------~~~~~~~~A~~~~~~~~~-------------------------------------~ 183 (498)
|-..|..=|+.. -+...+..|.++++++.. |
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 112222111111 122233444444443321 0
Q ss_pred ------C------hhHHHHHHH---------------------HHHhCCC-------HhHHHHHHHHHHHcCCCCCHHHH
Q 010881 184 ------N------AVSWSAMIN---------------------GYVQVDL-------FKEALEHFNYMQLCGFRPNHAGI 223 (498)
Q Consensus 184 ------~------~~~~~~li~---------------------~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~ 223 (498)
+ ..+|+..+. .+...|+ -+++..+++.....-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111111 1111222 23334444433322112222222
Q ss_pred HHHHHHHhccC---ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHH
Q 010881 224 VGALTACAFLG---ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RDVFAYTSLISG 295 (498)
Q Consensus 224 ~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~ 295 (498)
..+...--..- ..+....+++.+...-..--..+|..+++.-.+..-+..|..+|.++.+ .++..+++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 22221111111 2444455555555443333345777888888888899999999999875 367788888887
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHH
Q 010881 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEP--DNYVLGA 370 (498)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~ 370 (498)
|| .++..-|..+|+--+.. .+| ++.--...++.+...++-..|..+|++. .+.| ....|..
T Consensus 412 ~c-skD~~~AfrIFeLGLkk--f~d-----------~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK--FGD-----------SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh--cCC-----------ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 76 56778899999887664 222 3555567788888999999999999988 2344 3578999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC--C--chHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLD--H--EGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
++.--..-|+...+.++-++....-|. . ...-..+..-|.-.+++..-..-++.+
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999999999999999988876662 1 123345556666666655444434333
No 123
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=4.8e-05 Score=69.74 Aligned_cols=198 Identities=10% Similarity=-0.020 Sum_probs=146.9
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHH
Q 010881 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG-CIETACSV 277 (498)
Q Consensus 199 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~ 277 (498)
+++.+|..+|+.... ..+..++|......+.+.. +-+..+|+.-..++...| ++++++..
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 455666666665544 4467888999998888775 555567776666777777 68999999
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 010881 278 FDSMPN---RDVFAYTSLISGLANHDQS--ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352 (498)
Q Consensus 278 ~~~~~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 352 (498)
++++.+ ++..+|+.....+.+.|+. ++++.+++++.+. .|+ +..+|+...-++...|+++++
T Consensus 95 ~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpk-----------Ny~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 95 AEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAK-----------NYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--Ccc-----------cHHHHHHHHHHHHHhhhHHHH
Confidence 988775 4556777666566666653 6788899888874 344 689999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc----CCcchHH
Q 010881 353 KKVVREM-PIEP-DNYVLGALLNACRVH---GD----VDLGKETVESLVERSLDHEGVHVLLSNIYAST----EQWNGVE 419 (498)
Q Consensus 353 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~ 419 (498)
++.++++ ...| |...|+.....+.+. |. .+.+++...+++...|++..+|..+..++... ++..+|.
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 9999998 4445 677777766655544 22 35788888899999999999999999998873 4456687
Q ss_pred HHHHhhhhC
Q 010881 420 KVRRGMEDN 428 (498)
Q Consensus 420 ~~~~~m~~~ 428 (498)
+.+.+..+.
T Consensus 242 ~~~~~~~~~ 250 (320)
T PLN02789 242 SVCLEVLSK 250 (320)
T ss_pred HHHHHhhcc
Confidence 777766553
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.43 E-value=3.1e-06 Score=67.75 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4566778888999999999999999998 4445 7788888999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999998887654
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=5.8e-05 Score=78.20 Aligned_cols=207 Identities=12% Similarity=0.101 Sum_probs=163.2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC--------ChhhHHHHHHHHHccCCHHHHHHHHhhCCC
Q 010881 111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--------DVISWTSLINGYAKSGQISIARQMFDKMPE 182 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 182 (498)
|++++... +-+...|-..|......++++.|++++++.... -...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444443 234566777888888888999998888876532 235688888887777888888889988765
Q ss_pred C--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHH
Q 010881 183 K--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL--DIILG 258 (498)
Q Consensus 183 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 258 (498)
- ....|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.- +. .....
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~I 1603 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFI 1603 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHH
Confidence 3 2456888999999999999999999999876 34566788888888899999999999998887752 22 34566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 259 TAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
.-.++.-.+.|+.+.+..+|+.... +-...|+..|+.-.++|+.+.+..+|++....++.|.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 6677777899999999999998875 3567899999999999999999999999999887665
No 126
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.00063 Score=64.01 Aligned_cols=394 Identities=12% Similarity=0.014 Sum_probs=238.9
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RT-TFIWNTMIRGFAEKNEPIKAFALYKQM 79 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m 79 (498)
.|...+-..+...- +|...|+.-..+|++. |++++|.+=-.+-.+ |+ ...|+....++.-.|++++|+..|.+-
T Consensus 20 ~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~G 96 (539)
T KOG0548|consen 20 TAIRLFTEAIMLSP-TNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEG 96 (539)
T ss_pred HHHHHHHHHHccCC-CccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 45555655665553 3778888888999999 999999876655442 33 347888888888899999999999998
Q ss_pred HHCCCCCC-cchHHHHHHHHHcc---CCcHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHh----------CCChhhH
Q 010881 80 LRSDFLPN-NYTFSFILRACADT---SCLFVGLICHAQVIRLG---WESYDFVLNGLLHLYAT----------CNCMDPA 142 (498)
Q Consensus 80 ~~~~~~p~-~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~----------~g~~~~a 142 (498)
++ ..|+ ...++-+..++... ++.-..-.++..+.... .......|..++..+-+ -..+-.+
T Consensus 97 L~--~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 97 LE--KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred hh--cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 77 3454 34455555554111 00000000111110000 00001111112211111 0001111
Q ss_pred HHHhh----------------ccCCC------------C----------hhhHHHHHHHHHccCCHHHHHHHHhhCCCC-
Q 010881 143 RKLFD----------------MSVNR------------D----------VISWTSLINGYAKSGQISIARQMFDKMPEK- 183 (498)
Q Consensus 143 ~~~~~----------------~~~~~------------~----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~- 183 (498)
.-.+. .+..| | ..-...+.++..+..+++.|++-++...+.
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 11110 00011 0 012445677777888888888888877643
Q ss_pred -ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHhccCChHHHHHHHHHHHHhCCCCCh
Q 010881 184 -NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-------GALTACAFLGALDQGRWIHAYVDRNGIELDI 255 (498)
Q Consensus 184 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (498)
++.-++....+|...|.+.++...-....+.|-. ...-|+ .+..++.+.++++.+...|.........|+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 4444666777888889888887777776665521 112222 2334566678888999998886654333322
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC
Q 010881 256 ILGTAIIDMYAKCGCIETACSVFDSMP--NRDV-FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332 (498)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~ 332 (498)
..+....+++....+... .|.. .-.-.-...+.+.|++..|+..|.+++... |+ |
T Consensus 334 ---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~-----------D 391 (539)
T KOG0548|consen 334 ---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PE-----------D 391 (539)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cc-----------h
Confidence 223344455555444332 2222 111112567888999999999999998863 65 7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (498)
...|+...-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|++.|++.++.+|.+..+...+.++..
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999987776 55564 4455555566677789999999999999999998877666666666
Q ss_pred hcCCcchHHHHHHh
Q 010881 411 STEQWNGVEKVRRG 424 (498)
Q Consensus 411 ~~g~~~~a~~~~~~ 424 (498)
.........++.++
T Consensus 472 a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 472 AQRGDETPEETKRR 485 (539)
T ss_pred HhhcCCCHHHHHHh
Confidence 54334444444433
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=3.9e-05 Score=68.02 Aligned_cols=186 Identities=13% Similarity=-0.032 Sum_probs=113.8
Q ss_pred CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--
Q 010881 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH----AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII-- 256 (498)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 256 (498)
.....+..+...+...|++++|...|+++.... |+. .++..+..++...|++++|...++.+.+.. +.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 356677778888888888998888888887642 332 345566667777778888888877777653 22222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh-----hCCC
Q 010881 257 -LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI-----YGIE 330 (498)
Q Consensus 257 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----~~~~ 330 (498)
++..+..++... . ...+...|+.++|...|+++... .|+...... ....
T Consensus 108 ~a~~~~g~~~~~~------------~-----------~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~ 162 (235)
T TIGR03302 108 YAYYLRGLSNYNQ------------I-----------DRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLR 162 (235)
T ss_pred HHHHHHHHHHHHh------------c-----------ccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHH
Confidence 233333333322 0 00111224555666666665543 222100000 0000
Q ss_pred C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881 331 P-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI---EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 331 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
. .......+...+.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 163 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 163 NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0 0011235667888999999999999988 22 23 357888999999999999999999988876655
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=9.8e-06 Score=75.73 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 010881 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNY 366 (498)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 366 (498)
...|+..+...++++.|..+|+++.+.. +.....++..+...++-.+|.+++++. ...| +..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~----------------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~ 235 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD----------------PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE 235 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC----------------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 3445556666788888888888887752 234555777777788888888888877 3334 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
.+..-...|...++++.|+.+.+++++..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666667778889999999999999999999998899999999999999999998888875
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=9.5e-05 Score=63.12 Aligned_cols=155 Identities=19% Similarity=0.061 Sum_probs=114.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcC
Q 010881 224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHD 300 (498)
Q Consensus 224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 300 (498)
..+-..+...|+-+....+........ +.|......++....+.|++..|...|++... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 334445555566655555554433222 44555666788888888999999998888764 47788888888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 010881 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVH 378 (498)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 378 (498)
+.+.|..-|.+..+ +.|+ +...++.|.-.+.-.|+++.|..++... .-.-|...-..+.......
T Consensus 149 r~~~Ar~ay~qAl~--L~~~-----------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 149 RFDEARRAYRQALE--LAPN-----------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred ChhHHHHHHHHHHH--hccC-----------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 99999988888877 4555 4678888888888899999999988887 2223677777888888888
Q ss_pred CCHHHHHHHHHHHH
Q 010881 379 GDVDLGKETVESLV 392 (498)
Q Consensus 379 g~~~~A~~~~~~~~ 392 (498)
|++++|..+...-.
T Consensus 216 g~~~~A~~i~~~e~ 229 (257)
T COG5010 216 GDFREAEDIAVQEL 229 (257)
T ss_pred CChHHHHhhccccc
Confidence 99998888776543
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=3.1e-05 Score=75.00 Aligned_cols=179 Identities=15% Similarity=-0.005 Sum_probs=139.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcC
Q 010881 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHD 300 (498)
Q Consensus 223 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 300 (498)
=..+...+.+.|-...|..+++++. .+..++.+|+..|+..+|..+..+..+ |+...|..+.+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 3344555666777777777776543 456677888888888888887765544 57777888887777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 010881 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH 378 (498)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 378 (498)
-+++|.++.+..... .-..+.....+.+++.++.+.|+.- .++| ...+|-.+..+..+.
T Consensus 472 ~yEkawElsn~~sar-------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------------------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHHHHHHHhhhhhHH-------------------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 778888887765432 2222333344578999999999875 5556 678898888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
++++.|.+.|...+.++|++...|+.+..+|.+.|+-.+|...+++..+.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999998877
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.00017 Score=73.11 Aligned_cols=195 Identities=15% Similarity=0.019 Sum_probs=138.7
Q ss_pred hHHHHHHHHHccCCHHHHHH-HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881 156 SWTSLINGYAKSGQISIARQ-MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234 (498)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 234 (498)
....+=.+.+.-|..++|-+ ++.+. ..++....+.....+++.-....... ...+...+..|.......|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g 100 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQA--------RQVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARALEAAH 100 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHH--------HHHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcC
Confidence 33444444555666555533 22222 12333333333334444333333332 4556788888888999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMR 311 (498)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (498)
.+++|..+++.+.+.. +-+......+..++.+.+++++|...+++... | +......+..++.+.|++++|..+|++
T Consensus 101 ~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 101 RSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred CcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999998875 55667778889999999999999999998876 3 456677778889999999999999999
Q ss_pred HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 010881 312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLN 373 (498)
Q Consensus 312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 373 (498)
+... .|+ +..++..+..++...|+.++|...|++. ...|....|+.++.
T Consensus 180 ~~~~--~p~-----------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 180 LSRQ--HPE-----------FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHhc--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 9874 333 4788999999999999999999999988 33455566665553
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=6e-05 Score=69.91 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=93.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALL 372 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 372 (498)
.+...|++++|+..++.+... .|+ |+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~-----------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPD-----------NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 455678888888888887764 444 5677777788888888888888888887 56675 55566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.++.+.|++++|+.+++.....+|+++..|..|+.+|...|+..++.....++..
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7888888888888888888888888888888888888888887777766655543
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00061 Score=58.36 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=107.3
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ch
Q 010881 208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DV 286 (498)
Q Consensus 208 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 286 (498)
.+.+.......+......-...|...+++++|.+...... +......=+..+.+..+++.|.+.+++|.+- +-
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3334333333333333344445667777777776655411 2233333345556777788888888887763 34
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 010881 287 FAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--P 360 (498)
Q Consensus 287 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 360 (498)
.|.+-|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++. .
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455556665544 35677888888888663 4566778888888888888888888888877 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCc
Q 010881 361 IEPDNYVLGALLNACRVHGDV-DLGKETVESLVERSLDHE 399 (498)
Q Consensus 361 ~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 399 (498)
-..++.++..++..-...|.. +--.+.+.+.....|.++
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 333666666666655555544 444556667776677765
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.24 E-value=0.005 Score=58.26 Aligned_cols=366 Identities=13% Similarity=0.105 Sum_probs=221.3
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHh-CCCchH----HHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAE-KNEPIK----AFA 74 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~-~~~~~~----A~~ 74 (498)
+++|..+.++... ++..+..|..-|..-.+. .+++..+.+|.+-. .-+...|.+-|+--.+ .++... ..+
T Consensus 36 ~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~q 112 (656)
T KOG1914|consen 36 DKVRETYEQLVNV-FPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQ 112 (656)
T ss_pred HHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHH
Confidence 4566777776644 455678888888888888 99999999998733 4578888888875544 333333 344
Q ss_pred HHHHhHH-CCCCCCcc-hHHHHHHHH---------HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH------HH----
Q 010881 75 LYKQMLR-SDFLPNNY-TFSFILRAC---------ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH------LY---- 133 (498)
Q Consensus 75 ~~~~m~~-~~~~p~~~-~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------~~---- 133 (498)
.|+-..+ .|+.+-.. .|+..+..+ ....+++...+++++++.....--...|+.... ..
T Consensus 113 Ay~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK 192 (656)
T KOG1914|consen 113 AYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARK 192 (656)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555443 35444322 244433332 223355667777777775433222233322111 00
Q ss_pred ---HhCCChhhHHHHhhccC------CCC---------------hhhHHHHHHH--------------------------
Q 010881 134 ---ATCNCMDPARKLFDMSV------NRD---------------VISWTSLING-------------------------- 163 (498)
Q Consensus 134 ---~~~g~~~~a~~~~~~~~------~~~---------------~~~~~~li~~-------------------------- 163 (498)
-+...+-.|.++++++. ... ...|-.+|.-
T Consensus 193 ~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l 272 (656)
T KOG1914|consen 193 FIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL 272 (656)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence 11223444555554321 000 0112222211
Q ss_pred -----------------------HHccCC-------HHHHHHHHhhCCC----CChhHHHHHHHHHHhCC---CHhHHHH
Q 010881 164 -----------------------YAKSGQ-------ISIARQMFDKMPE----KNAVSWSAMINGYVQVD---LFKEALE 206 (498)
Q Consensus 164 -----------------------~~~~~~-------~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g---~~~~a~~ 206 (498)
+...|+ -+++..+++.... .+..+|..+...--..- ..+....
T Consensus 273 l~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~ 352 (656)
T KOG1914|consen 273 LYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHE 352 (656)
T ss_pred HHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHH
Confidence 111222 2334444443332 12233333322111111 2566667
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPN-- 283 (498)
Q Consensus 207 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 283 (498)
.+++++..-..--..+|...++...+...+..|..+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+.-.+
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF 431 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc
Confidence 77777654323334578888888889999999999999999887666 7888899999887 5688999999997554
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 010881 284 R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--- 359 (498)
Q Consensus 284 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 359 (498)
+ ++.--...+.-+...++-..+..+|++....++.|+. ....|..+++.=..-|++..+.++-+++
T Consensus 432 ~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k----------s~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 432 GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK----------SKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh----------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3 4445566777788889999999999999998666663 6789999999999999999999998876
Q ss_pred -C--CCCCHHHHHHHHHHHHhcCCH
Q 010881 360 -P--IEPDNYVLGALLNACRVHGDV 381 (498)
Q Consensus 360 -~--~~p~~~~~~~l~~~~~~~g~~ 381 (498)
+ ..+....-..+++-|.-.+.+
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhcccc
Confidence 2 222222334455556555544
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.1e-06 Score=50.06 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 88 (498)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999988888874
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3e-06 Score=49.06 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP 86 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 86 (498)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.00024 Score=66.02 Aligned_cols=137 Identities=13% Similarity=0.012 Sum_probs=112.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881 263 DMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l 339 (498)
-.+...|+++.|+..++.+.. | |+..+......+...|+..+|.+.+++++.. .|+ .....-.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~-----------~~~l~~~~ 380 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPN-----------SPLLQLNL 380 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC-----------ccHHHHHH
Confidence 345578899999999988764 4 6677777788999999999999999999885 444 36777888
Q ss_pred HHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881 340 VDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (498)
.++|.+.|++.+|..++++. ..+-|+..|..|..+|...|+..+|.. ..+..|...|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence 99999999999999999998 434489999999999999999877665 44567778899999
Q ss_pred HHHHHHhhhhCC
Q 010881 418 VEKVRRGMEDNE 429 (498)
Q Consensus 418 a~~~~~~m~~~~ 429 (498)
|...+....+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999988887653
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=4.3e-06 Score=48.71 Aligned_cols=34 Identities=32% Similarity=0.581 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 219 (498)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999988888887
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.0011 Score=68.30 Aligned_cols=217 Identities=9% Similarity=-0.008 Sum_probs=99.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHH-HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS-FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 130 (498)
+...|..|+..+...+++++|.++.+...+ ..|+...+- .+...+.+.++.+.+..+ .+ +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NL---------------I 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------h
Confidence 455666677777677777777777775555 334443322 222234444444433333 11 1
Q ss_pred HHHHhCCChhhHHHHhhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHH
Q 010881 131 HLYATCNCMDPARKLFDMSVN--RDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEAL 205 (498)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 205 (498)
.......++..+..+.+.+.. .+..++-.+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... ++++|.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 112222222111111111111 1222444555555555555555555555543 2445555555555555 555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 010881 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD 285 (498)
Q Consensus 206 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 285 (498)
+++.+.+.. +...+++..+..+|..+.... +.+...+-.+.+.....-.. .+-
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~-----------~~~ 222 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREF-----------TRL 222 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhcc-----------chh
Confidence 555554432 334445555555555555443 22222222222221111001 122
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881 286 VFAYTSLISGLANHDQSASAIELFMRMQLE 315 (498)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (498)
+.++--+-..|-..++++++..+++.+++.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 334444445566666677777777776653
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.09 E-value=6.6e-06 Score=47.55 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 218 (498)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00012 Score=58.46 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+......+...+...|++++|...|+.+...+ |+ +...+..+...+...|++++|...+++. ...|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PY-----------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34445566677888999999999999987742 33 5788999999999999999999999988 4445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
+...+..+...+...|++++|...++++++..|++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 6778888888999999999999999999999998865
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00014 Score=68.12 Aligned_cols=122 Identities=12% Similarity=0.047 Sum_probs=75.8
Q ss_pred HHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238 (498)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 238 (498)
.|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+.+.++++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 444555556677777777777766655556666666666667777777777766531 2233344444445556666666
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282 (498)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 282 (498)
|..+.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.++
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666653 3444566667777777777777766666655
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=6.2e-05 Score=58.52 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHH
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDH---EGVHVLL 405 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 405 (498)
.++..++..+.+.|++++|...|+++ ...|+ ...+..+...+...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 46777888999999999999999998 33343 3466778889999999999999999999988875 4568889
Q ss_pred HHHhHhcCCcchHHHHHHhhhhCC
Q 010881 406 SNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 406 ~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
+.++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=4.9e-05 Score=56.08 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
++..+...+...|++++|...+++. ...| +...+..+...+...+++++|.+.++.+....|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3566788888999999999999987 4445 4567778888899999999999999999999999888899999999999
Q ss_pred CCcchHHHHHHhhhhC
Q 010881 413 EQWNGVEKVRRGMEDN 428 (498)
Q Consensus 413 g~~~~a~~~~~~m~~~ 428 (498)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999887653
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00085 Score=57.06 Aligned_cols=185 Identities=14% Similarity=0.031 Sum_probs=139.2
Q ss_pred cCChHHHHHHHHHHHHh---C-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHH-HHHHHhcCChHH
Q 010881 233 LGALDQGRWIHAYVDRN---G-IELDII-LGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSL-ISGLANHDQSAS 304 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~ 304 (498)
..+.++..+++..+... | ..++.. ++..++-+...+|+.+.|..+++.+.. |+..-...| ..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34677777777776542 3 344443 445666677789999999999988765 322211111 112445789999
Q ss_pred HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 010881 305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVD 382 (498)
Q Consensus 305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 382 (498)
|+++++.+++.+ |+ |..++---+...-..|+--+|++-+.+. .+..|...|.-+...|...|+++
T Consensus 105 A~e~y~~lL~dd--pt-----------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PT-----------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHHHHhccC--cc-----------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 999999999864 43 5677777777777788888888888777 56679999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC---cchHHHHHHhhhhCCc
Q 010881 383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQ---WNGVEKVRRGMEDNEV 430 (498)
Q Consensus 383 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~ 430 (498)
+|.-.+++++=..|.++..+..++..+.-.|- ..-|.++|.+..+...
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999888899998877664 4567888888877544
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=3.2e-05 Score=67.24 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=79.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchH
Q 010881 341 DLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV 418 (498)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 418 (498)
.-+.+.+++.+|+..|.+. .+.| |++.|..-..+|.+.|.++.|.+-.+.++..+|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566889999999999998 7777 7888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 010881 419 EKVRRGMED 427 (498)
Q Consensus 419 ~~~~~~m~~ 427 (498)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999977754
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=5.6e-06 Score=59.78 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881 346 AGMLEAAKKVVREM-PIEP---DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 346 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
.|++++|+.+++++ ...| +...+..+..+|.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58899999999998 3233 455666689999999999999999999 777787777777889999999999999999
Q ss_pred HHh
Q 010881 422 RRG 424 (498)
Q Consensus 422 ~~~ 424 (498)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 975
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0007 Score=61.58 Aligned_cols=270 Identities=12% Similarity=-0.037 Sum_probs=121.0
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHHHHH
Q 010881 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQISIAR 174 (498)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 174 (498)
+.+..++..|+..+...++.++. +..-|..-+..+...|++++|.--.++-++ .....+.-.-.++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 33445556666666666666543 233344444444455555555433332221 12222333333444444455555
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCC
Q 010881 175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTA-CAFLGALDQGRWIHAYVDRNGIE 252 (498)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~ 252 (498)
+.|+ +...| ....++..++....... +|...++..+-.- +...++.++|.+.--.+.+.. .
T Consensus 138 ~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 138 EKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred HHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 5444 11111 11222222222222211 2333344333222 244566666666555554433 1
Q ss_pred CChhHHHHHHH--HHHhcCCHHHHHHHHhhCCCCChhH---------------HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881 253 LDIILGTAIID--MYAKCGCIETACSVFDSMPNRDVFA---------------YTSLISGLANHDQSASAIELFMRMQLE 315 (498)
Q Consensus 253 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (498)
...+..+++ ++.-.++.+.|...|++...-++.. |..=..-..+.|++.+|.+.|.+.+.
T Consensus 201 --~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~- 277 (486)
T KOG0550|consen 201 --TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN- 277 (486)
T ss_pred --chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc-
Confidence 122222222 2233556667777776665422211 11112223455666666666666543
Q ss_pred CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 316 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
+.|+ ..+|+...|.....+..+.|+..+|+.-.++. .+.|. ...|..-..++...+++++|.+-|+.+.+
T Consensus 278 -idP~-------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 278 -IDPS-------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred -CCcc-------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4554 45555566666666666666666666555554 33221 12222222344445556666666666555
Q ss_pred cCC
Q 010881 394 RSL 396 (498)
Q Consensus 394 ~~~ 396 (498)
...
T Consensus 350 ~~~ 352 (486)
T KOG0550|consen 350 LEK 352 (486)
T ss_pred hcc
Confidence 443
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.02 E-value=0.00015 Score=56.28 Aligned_cols=107 Identities=18% Similarity=0.105 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD- 364 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 364 (498)
.++..++..+...|++++|...|.++.... |+. ......+..+..++.+.|++++|...|+++ ...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKS--------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc--------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 356677788899999999999999998752 321 112456777999999999999999999988 33343
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 365 ---NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 365 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
..++..+..++...|+.++|...++++++..|+++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 556778888999999999999999999999999875443
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=7.8e-05 Score=64.94 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=92.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 010881 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGAL 371 (498)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 371 (498)
.-+.+.+++.+|+..|.+.++ +.|+ |.+.|..-..+|.+.|.++.|++-.+.. .+.| ...+|..|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~-----------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPT-----------NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCC-----------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 346778999999999999988 3454 7899999999999999999999998887 7777 57899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (498)
..+|...|++++|++.|+++++++|++......|-.+--+.+..+
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999866666655544444443
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.99 E-value=1.8e-05 Score=54.61 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC-CcchHHHHHHhhhh
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE-QWNGVEKVRRGMED 427 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 427 (498)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888889999999999999999999999999999999999999999 79999999987765
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=0.00018 Score=67.53 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=90.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA 370 (498)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 370 (498)
.......|++++|+..|+++++. .|+ +...|..+..+|...|++++|+..++++ .+.| +...|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~-----------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPN-----------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 44567789999999999999884 444 5788999999999999999999999998 6566 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
+..+|...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877766555433
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.03 Score=56.43 Aligned_cols=211 Identities=13% Similarity=0.086 Sum_probs=137.6
Q ss_pred CChhHHHHHhhhcCCCCc-chHHHHHHHH--HhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQYRTT-FIWNTMIRGF--AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA 112 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~~~-~~~~~li~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 112 (498)
+++..|....+++.++.+ ..|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.+..++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 788888888887663322 2455555554 4789999999888887664433 77888888899999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhh----HHHHhhccCCCChhhHHHHHHHHHc-cCC---------HHHHHHHHh
Q 010881 113 QVIRLGWESYDFVLNGLLHLYATCNCMDP----ARKLFDMSVNRDVISWTSLINGYAK-SGQ---------ISIARQMFD 178 (498)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~-~~~---------~~~A~~~~~ 178 (498)
+..... |+......+..+|.+-+++.+ |.+++....+.--..|+. ++.+.. ... ..-|.+.++
T Consensus 102 ~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHH
Confidence 998765 446667777888888777654 566666544444444443 333222 111 234566666
Q ss_pred hCCCCC-----hhHHHHHHHHHHhCCCHhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 010881 179 KMPEKN-----AVSWSAMINGYVQVDLFKEALEHFN-YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG 250 (498)
Q Consensus 179 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (498)
.+.+.+ ..-...-...+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 665433 1111122334456788999998884 34343333344444566667777888888888888888776
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=7.9e-05 Score=70.01 Aligned_cols=91 Identities=7% Similarity=-0.026 Sum_probs=81.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881 339 LVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (498)
-...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|++...|..++.+|...|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 356677889999999999998 5556 67788888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhCC
Q 010881 417 GVEKVRRGMEDNE 429 (498)
Q Consensus 417 ~a~~~~~~m~~~~ 429 (498)
+|...|++..+.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887644
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.00053 Score=55.43 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc-c---hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch--hHHHHH
Q 010881 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN-Y---TFSFILRACADTSCLFVGLICHAQVIRLGWESYD--FVLNGL 129 (498)
Q Consensus 56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 129 (498)
|..++..+ ..++...+...++.+.+.. |+. . ..-.+...+...|++++|...|+.+......++. .....|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44445444 3667777777777776632 222 1 2222345566677777777777777776533321 123334
Q ss_pred HHHHHhCCChhhHHHHhhccCCC--ChhhHHHHHHHHHccCCHHHHHHHHh
Q 010881 130 LHLYATCNCMDPARKLFDMSVNR--DVISWTSLINGYAKSGQISIARQMFD 178 (498)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~ 178 (498)
..++...|++++|...++....+ ....+......+.+.|+.++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555555555555443222 12233333444444444444444443
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00011 Score=64.44 Aligned_cols=103 Identities=11% Similarity=0.003 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHG---DVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
|...|-.|..+|...|+++.|..-|.+. .+.| |+..+..+..++.... ...++..++++++..+|.+..+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 7999999999999999999999999988 4444 6667777776654332 467899999999999999999999999
Q ss_pred HHhHhcCCcchHHHHHHhhhhCCccccC
Q 010881 407 NIYASTEQWNGVEKVRRGMEDNEVRKVP 434 (498)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 434 (498)
..+...|++.+|...|+.|.+.....+|
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999987654333
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00021 Score=59.76 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
....+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.+...+..++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4667888899999999999999999988 33332 467888889999999999999999999999999998899999
Q ss_pred HHhHhcCC
Q 010881 407 NIYASTEQ 414 (498)
Q Consensus 407 ~~~~~~g~ 414 (498)
.++...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 99988776
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.0016 Score=52.64 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD--IILGTAII 262 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 262 (498)
.|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+......++ ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 46777777777777776531111 12222344556677788888888877777652222 12344566
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010881 263 DMYAKCGCIETACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRM 312 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (498)
..+...|++++|...++....+ ....+......|...|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888775543 3345666677788888888888887764
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00049 Score=57.50 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN 365 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 365 (498)
.+..+...+...|++++|...|++.......+. .....+..+..++.+.|++++|...+++. ...| +.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPN----------DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 344444445555555555555555544211110 01234455555555555555555555554 3333 33
Q ss_pred HHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881 366 YVLGALLNACRVHGD--------------VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (498)
..+..+...+...|+ +++|.++++++++.+|++ +..+...+...|+
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 334444444444443 577888888888888776 4445555544444
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=3.5e-05 Score=52.43 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+...+...|++++|++.|+++++..|+++..+..++.++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888888888888888888888888777654
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.0003 Score=51.81 Aligned_cols=81 Identities=11% Similarity=-0.007 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLG--------ALDQGRWIHAYVDRNGIELDIIL 257 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 257 (498)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777778999999999999999999 999999999999987653 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 010881 258 GTAIIDMYAK 267 (498)
Q Consensus 258 ~~~l~~~~~~ 267 (498)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00036 Score=51.28 Aligned_cols=97 Identities=18% Similarity=0.112 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN 365 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 365 (498)
++..+...+...|++++|...+++..+. .|+ +...+..+..++...|++++|.+.+++. ...| +.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--DPD-----------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3556777888899999999999998774 232 3477888999999999999999999987 3344 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
.++..+...+...|+++.|...++.+.+..|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 68888889999999999999999999887763
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.7e-05 Score=43.80 Aligned_cols=31 Identities=16% Similarity=0.444 Sum_probs=23.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 84 (498)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877653
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.3e-05 Score=43.41 Aligned_cols=30 Identities=40% Similarity=0.760 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCG 215 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 215 (498)
++|++++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367777777777777777777777777765
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.0023 Score=58.21 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-- 363 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-- 363 (498)
++..+...+.+.|++++|..+|++........+ ....+. ..|...+-++...||+..|...+++. ...|
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-------l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-------LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-------TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455567788889999999999999877532221 112222 23445556777789999999999886 3333
Q ss_pred --C--HHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Q 010881 364 --D--NYVLGALLNACRVH--GDVDLGKETVESLVE 393 (498)
Q Consensus 364 --~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 393 (498)
+ ......|+.+|-.. ..++.+..-|+.+..
T Consensus 230 ~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 230 ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2 34556667766432 245555555554443
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.77 E-value=9.3e-05 Score=50.29 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=53.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 339 LVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
+...+...|++++|...|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567888999999999999999 5567 677888899999999999999999999999999874
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.77 E-value=0.00065 Score=54.07 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+....-.+..-+...|++++|..+|+-+..- .|. +..-|..|.-++...|++++|+..|... .+.|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~-----------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAW-----------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI 100 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc-----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3334444555567778888888888877663 333 5677778888888888888888888877 4445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
|+..+-.+..++...|+.+.|++.|+.++...
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67777777888888888888888888887754
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.76 E-value=0.01 Score=52.46 Aligned_cols=192 Identities=12% Similarity=-0.001 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchH----HHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHH
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTF----SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN 127 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 127 (498)
+...+-.....+.+.|++++|+..|+++... .|+...- -.+..++.+.++++.|...+++.++..+.....-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3333334455566789999999999999873 3443322 345577888999999999999999987654444444
Q ss_pred HHHHHHHhCCChhhHHHHhhccC--CCCh-------hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhC
Q 010881 128 GLLHLYATCNCMDPARKLFDMSV--NRDV-------ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV 198 (498)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~--~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 198 (498)
..+.+.+..........-+.... ..|. ..+..++.-|=.+.-..+|...+..+...-...--.+...|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44433331100000000000000 0011 12233333333333344444443333322111222345566777
Q ss_pred CCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881 199 DLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGALDQGRWIHAY 245 (498)
Q Consensus 199 g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 245 (498)
|.+..|..-++.+.+. +.+........+..++...|..++|..+...
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7777777777777654 1222233444555555555655555554443
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.75 E-value=0.00062 Score=54.43 Aligned_cols=94 Identities=6% Similarity=-0.041 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
...-....-+...|++++|..+|+-+ -..| +..-|..|..+|...+++++|...|..+..++++++.++...+..+..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 33444555667899999999999988 3334 666788888899999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHhhhh
Q 010881 412 TEQWNGVEKVRRGMED 427 (498)
Q Consensus 412 ~g~~~~a~~~~~~m~~ 427 (498)
.|+.+.|...|+...+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999987765
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00046 Score=65.06 Aligned_cols=119 Identities=9% Similarity=0.067 Sum_probs=78.3
Q ss_pred CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc
Q 010881 16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YR-----TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY 89 (498)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 89 (498)
.+-+......+++.+... .+++.+..++-+.. .| -..+..++|+.|.+.|..+.++.+++.=...|+-||.+
T Consensus 62 ~~vS~~dld~fvn~~~~~--~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESK--DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCcHHHHHHHHhhcCCH--hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344555566666666666 66666776665544 22 13445577777777777777777777777777777777
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 010881 90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136 (498)
Q Consensus 90 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (498)
+++.||..+.+.|++..|.++...|...+.-.+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777776666555556655555555544
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=6.7e-05 Score=51.55 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
...|++++|++.|+++++..|++..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788888888898888888888888888888888889998888888777654
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0015 Score=64.24 Aligned_cols=138 Identities=11% Similarity=0.002 Sum_probs=86.0
Q ss_pred CCChhHHHHHHHHHHhc-----CCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcC--------ChHHHHHHHHHHHHc
Q 010881 252 ELDIILGTAIIDMYAKC-----GCIETACSVFDSMPN--RD-VFAYTSLISGLANHD--------QSASAIELFMRMQLE 315 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~ 315 (498)
+.+...|...+++.... ++.+.|..+|++..+ |+ ...|..+..++.... +...+.+...+....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 55666777776664332 236677777777764 32 234444333332211 122333333332222
Q ss_pred CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 316 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
... ..+...|..+.......|++++|...++++ .+.|+...|..+...+...|+.++|.+.++++..+
T Consensus 414 ~~~-----------~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 414 PEL-----------NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ccC-----------cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 224567777766666778888888888887 66778888888888888888888888888888888
Q ss_pred CCCCch
Q 010881 395 SLDHEG 400 (498)
Q Consensus 395 ~~~~~~ 400 (498)
+|.++.
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 888774
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.00061 Score=56.69 Aligned_cols=94 Identities=15% Similarity=-0.043 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 407 (498)
...|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 567788888889999999999999988 33333 3578889999999999999999999999999998888888888
Q ss_pred HhH-------hcCCcchHHHHHHhhh
Q 010881 408 IYA-------STEQWNGVEKVRRGME 426 (498)
Q Consensus 408 ~~~-------~~g~~~~a~~~~~~m~ 426 (498)
++. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 7888887766665543
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.00098 Score=60.38 Aligned_cols=131 Identities=12% Similarity=0.130 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881 256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVF---AYTSLISG-LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331 (498)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 331 (498)
.+|..+++..-+.+..+.|..+|.++.+.... .|-..... |...++.+.|..+|+..++. +..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------------f~~ 68 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------------HTT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------------CCC
Confidence 36677777777777788888888877654332 33333333 23356666699999998874 233
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDN----YVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
+...|...++.+.+.|+.+.|..+|++. ..-|.. ..|..++..-.+.|+.+....+.+++.+.-|++.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 6788888999999999999999999987 323333 5899999999999999999999999999887754
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00048 Score=50.77 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCC-CCCcchHHHHHHHHHccC--------CcHHHHHHHHHHHHhCCCCchhHH
Q 010881 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTS--------CLFVGLICHAQVIRLGWESYDFVL 126 (498)
Q Consensus 56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 126 (498)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556677778999999999999999999 899999999999877653 345667889999999999999999
Q ss_pred HHHHHHHHh
Q 010881 127 NGLLHLYAT 135 (498)
Q Consensus 127 ~~l~~~~~~ 135 (498)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0022 Score=53.36 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 010881 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP- 363 (498)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 363 (498)
...|..+...+...|++++|+..|++..... |+. .....++..+..++...|++++|...+++. .+.|
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~--------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDP--------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccc--------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 4456667777778888888888888887642 220 012457888888888899999999888887 4444
Q ss_pred CHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881 364 DNYVLGALLNACR-------VHGDVD-------LGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415 (498)
Q Consensus 364 ~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (498)
...++..+...+. ..|+++ +|..++++++...|++. ......+...|++
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 4555666666665 677766 45555555666666543 3333334444443
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.053 Score=49.85 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=18.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHhhhcC
Q 010881 23 VGKIIGFCSASDIGDLSHGYRLFVCLQ 49 (498)
Q Consensus 23 ~~~l~~~~~~~~~g~~~~A~~~~~~~~ 49 (498)
|..+...-... |+..-|..+++.=+
T Consensus 3 ~a~IA~~A~~~--GR~~LA~~LL~~Ep 27 (319)
T PF04840_consen 3 YAEIARKAYEE--GRPKLATKLLELEP 27 (319)
T ss_pred HHHHHHHHHHc--ChHHHHHHHHHcCC
Confidence 45556666667 99999999888544
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.60 E-value=0.00014 Score=50.08 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHG-DVDLGKETVESLVERSL 396 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 396 (498)
+..+|..+...+...|++++|+..|++. .+.| +...|..+..+|...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4678999999999999999999999998 5556 6778888999999999 79999999999999887
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.60 E-value=0.061 Score=50.12 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=75.7
Q ss_pred HHhcCC-hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---CCHHHH---HHHHHhCCCCC----C
Q 010881 296 LANHDQ-SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---GMLEAA---KKVVREMPIEP----D 364 (498)
Q Consensus 296 ~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A---~~~~~~~~~~p----~ 364 (498)
+-+.|. -++|+.+++.+++- .|.+ +.....++..+=.+|..+ ..+.+- ...+++.|+.| +
T Consensus 389 lW~~g~~dekalnLLk~il~f--t~yD-------~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF--TNYD-------IECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh--cccc-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 444555 77888999888763 3331 111112222222233221 122222 22233446555 3
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 365 NYVLGALLNA--CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 365 ~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
...-|.|..| +..+|++.++.-.-.-+.+..| ++.+|..++-.+....++++|..+++.+.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3345555554 5778999999988888888899 67799999999999999999999997764
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.58 E-value=0.00018 Score=50.17 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=47.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
..|...++++.|.+++++++..+|+++..+...+.++...|++++|.+.+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788888888888888888888888888888888888888888888888887554
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.013 Score=53.42 Aligned_cols=211 Identities=13% Similarity=0.147 Sum_probs=114.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-----cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 010881 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-----NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130 (498)
Q Consensus 56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 130 (498)
|+.....|...+++++|.+.|.+........+ ...|......+. ..+++.|...+++. +
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A---------------~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKA---------------I 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHH---------------H
Confidence 34456677778888888888877643211100 011222222222 22555555444444 3
Q ss_pred HHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHcc-CCHHHHHHHHhhCC-------CC--ChhHHHHHHHHHHhCCC
Q 010881 131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS-GQISIARQMFDKMP-------EK--NAVSWSAMINGYVQVDL 200 (498)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~ 200 (498)
..|...|++..|-+++. .+...|... |+++.|++.|++.. .+ -...+..+...+.+.|+
T Consensus 102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 44555555555544432 334444444 55555555555443 11 13356677788999999
Q ss_pred HhHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCC--hhHHHHHHHHHHh--c
Q 010881 201 FKEALEHFNYMQLCGF-----RPNHA-GIVGALTACAFLGALDQGRWIHAYVDRN--GIELD--IILGTAIIDMYAK--C 268 (498)
Q Consensus 201 ~~~a~~~~~~m~~~g~-----~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~--~ 268 (498)
+++|..+|++....-. +.+.. .|...+-++...||+..|...++..... ++..+ ..+...|+.++-. .
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 9999999999876432 22222 2333444566778999999998887654 22222 3456677777754 3
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHH
Q 010881 269 GCIETACSVFDSMPNRDVFAYTSLI 293 (498)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~~~~~li 293 (498)
..++.|..-|+.+.+-|..--..|+
T Consensus 251 e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 251 EAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp CCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHcccCccHHHHHHHHH
Confidence 4688888888888876665444443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.58 E-value=9.2e-05 Score=50.88 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=53.2
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
...|++++|.++|+++ ...| +...+..+..+|.+.|++++|.++++++....|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4689999999999998 4455 7888888999999999999999999999999999865555544
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.53 E-value=0.0015 Score=50.07 Aligned_cols=90 Identities=17% Similarity=0.017 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHH
Q 010881 337 GCLVDLLGRAGMLEAAKKVVREM---PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLD---HEGVHVLLSNI 408 (498)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 408 (498)
..+..++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..+++......|+ +......++-+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 34567788899999999999987 43332 446677888999999999999999999998888 56667778889
Q ss_pred hHhcCCcchHHHHHHhhh
Q 010881 409 YASTEQWNGVEKVRRGME 426 (498)
Q Consensus 409 ~~~~g~~~~a~~~~~~m~ 426 (498)
+...|+.++|++.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 999999999999875544
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0008 Score=61.14 Aligned_cols=99 Identities=13% Similarity=-0.101 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------- 359 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------- 359 (498)
.+..|..++.-.|+++.|.+.|+.....-+... .-........+|...|.-..++++|+.++++-
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg-------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG-------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544332211111 00112344556677777777777787776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 360 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
...-....+.+|..++...|..++|+.+.+..++
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2223566778888888888888888888777665
No 185
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.51 E-value=0.14 Score=51.89 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=127.9
Q ss_pred hHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 010881 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97 (498)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 97 (498)
..|...+.++...+.|..++|..+++.... .|..+...+-..|...++.++|..+|++..+ ..|+......+..+
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFma 119 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMA 119 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHH
Confidence 344555555554444999999999987652 3777888899999999999999999999987 45888888889999
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-Ch---------hhHHHHhhccCCCC--hhh---HHHHHH
Q 010881 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN-CM---------DPARKLFDMSVNRD--VIS---WTSLIN 162 (498)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~---------~~a~~~~~~~~~~~--~~~---~~~li~ 162 (498)
|.+.+++.+-.++--++-+.-+ .+...+=++++.+...- .. .-|.+.++.+.+.+ ..+ ...-..
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 9999988776666555555433 34444434555444321 11 22444555554333 111 112223
Q ss_pred HHHccCCHHHHHHHHhh-----CCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881 163 GYAKSGQISIARQMFDK-----MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215 (498)
Q Consensus 163 ~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 215 (498)
.+-..|++++|.+++.. ...-+...-+.-+..+...++|.+..++-.++...|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 34567889999998832 222344455566777888889999988888888775
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.0045 Score=60.98 Aligned_cols=134 Identities=11% Similarity=-0.010 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc--------CCH
Q 010881 283 NRDVFAYTSLISGLANHD-----QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA--------GML 349 (498)
Q Consensus 283 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 349 (498)
..|...|...+++..... ....|..+|++..+. .|+ ....|..+..++... ++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~-----------~a~a~A~la~~~~~~~~~~~~~~~~l 400 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPD-----------FTYAQAEKALADIVRHSQQPLDEKQL 400 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 357789999988754432 367899999999884 555 355566554444322 223
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 350 EAAKKVVREM----PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 350 ~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
..+.+...+. ....++..|..+...+...|++++|...++++++++|. ...|..++.++...|+.++|.+.+++.
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555553 12335677888877777889999999999999999995 678999999999999999999999888
Q ss_pred hhCCc
Q 010881 426 EDNEV 430 (498)
Q Consensus 426 ~~~~~ 430 (498)
...+.
T Consensus 480 ~~L~P 484 (517)
T PRK10153 480 FNLRP 484 (517)
T ss_pred HhcCC
Confidence 76543
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0016 Score=61.46 Aligned_cols=116 Identities=9% Similarity=0.028 Sum_probs=86.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKMPEK------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 226 (498)
+......+++.+....+++.+..++.+.... -..|..++++.|.+.|..++++.+++.=..-|+-||.++++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344455566666666677777776666532 2345568889999999999999999888888999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC 268 (498)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (498)
+..+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999888887777666666666555555554
No 188
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.41 E-value=0.00035 Score=50.30 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=20.2
Q ss_pred CCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881 198 VDLFKEALEHFNYMQLCGFR-PNHAGIVGALTACAFLGALDQGRWIHAY 245 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 245 (498)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555555555543211 1222222334444444444444444444
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.012 Score=47.71 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=101.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 010881 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE 362 (498)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 362 (498)
|++..--.|..+....|+..+|...|.+... |+..+ |....-.+.++....+++.+|...++++ ...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~-----------d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAH-----------DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCC-----------CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 4555566678888999999999999998765 33333 6778888889999999999999999987 222
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 363 P---DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 363 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
| ++.+...+.+.+...|++.+|+..|+.++...|+.. .-......+.++|+.+++..-+..+.+
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 233445577889999999999999999999888754 556677888999998888765555443
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0013 Score=54.88 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=82.2
Q ss_pred hhHHHHHhhhc--CCCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc---------
Q 010881 38 LSHGYRLFVCL--QYRTTFIWNTMIRGFAEK-----NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT--------- 101 (498)
Q Consensus 38 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------- 101 (498)
+..-...|+.. ..+|..+|..+++.|.+. |..+-....+..|.+.|+.-|..+|+.||+.+=+.
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 44455667766 467888999999988754 66777788889999999999999999999987543
Q ss_pred -------CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881 102 -------SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138 (498)
Q Consensus 102 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (498)
.+-+.|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2457789999999999999999999999999876654
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.023 Score=52.11 Aligned_cols=264 Identities=10% Similarity=-0.078 Sum_probs=136.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 010881 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNY-TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137 (498)
Q Consensus 59 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 137 (498)
....+-+..++..|+..+....+.. |+.. -|..-+..+...|+++.+.--.+.-++.... ....+.-.-+++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 3445666778888888888888744 4433 3444445555566666666555444443211 1122333334444444
Q ss_pred ChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC-----CChhHHHHH-HHHHHhCCCHhHHHHHHHHH
Q 010881 138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE-----KNAVSWSAM-INGYVQVDLFKEALEHFNYM 211 (498)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m 211 (498)
+..+|.+.++. ...| ....|+..++.... |...+|..+ ..++.-.|++++|.+.--..
T Consensus 132 ~~i~A~~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 132 DLIEAEEKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHHHHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 55555544431 0000 01111111221111 111222222 12344445555555554444
Q ss_pred HHcCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHhCCCCChh-------------HHHHHHHHHHhcCCHHHHHH
Q 010881 212 QLCGFRPNHAGIVGALTA--CAFLGALDQGRWIHAYVDRNGIELDII-------------LGTAIIDMYAKCGCIETACS 276 (498)
Q Consensus 212 ~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~ 276 (498)
++.. ++ ..+...+++ +...++.+.+...|++.+..+ |+.. .+..=.+-..+.|.+..|.+
T Consensus 196 lkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 4321 11 111222222 223344555555555544332 2211 11112244568899999999
Q ss_pred HHhhCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH
Q 010881 277 VFDSMPN-------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349 (498)
Q Consensus 277 ~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 349 (498)
.|.+... ++...|-.......+.|+..+|+.--++..... |. -...|..-..++...+++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~s-----------yikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SS-----------YIKALLRRANCHLALEKW 337 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HH-----------HHHHHHHHHHHHHHHHHH
Confidence 9998875 344567777777888999999999888876631 11 123333334566677899
Q ss_pred HHHHHHHHhC
Q 010881 350 EAAKKVVREM 359 (498)
Q Consensus 350 ~~A~~~~~~~ 359 (498)
++|.+-+++.
T Consensus 338 e~AV~d~~~a 347 (486)
T KOG0550|consen 338 EEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.13 Score=47.28 Aligned_cols=278 Identities=13% Similarity=0.102 Sum_probs=123.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 010881 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA 134 (498)
Q Consensus 55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (498)
+|..+.......|+.+.|..+++. .|+..- =+..+...|+.+.| +.+..+.| .|| .+|..|+..-.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHHHH
Confidence 567777777788999998887653 344322 23344556666555 44555555 222 34444544333
Q ss_pred hCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc
Q 010881 135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214 (498)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (498)
+.. ...-..++ ...+.+ ..+...|++..+.+.-..+|.+-.+........+-.++.. .+.+.-...+....+.
T Consensus 68 ~l~-~s~f~~il----~~~p~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~ 140 (319)
T PF04840_consen 68 KLS-LSQFFKIL----NQNPVA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKL 140 (319)
T ss_pred hCC-HHHHHHHH----HhCcch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 322 11111121 112222 2344456666666666666554333222222222222222 3333322222222210
Q ss_pred -CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHH
Q 010881 215 -GFRPNHAGIVGALTACAFLGALDQGRWIHAYVD----RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY 289 (498)
Q Consensus 215 -g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 289 (498)
+-..+......+ .++-.++++.-. +.+......+.+..+.-+...|+...|.++-.+..-|+-..|
T Consensus 141 y~~~k~~~f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw 211 (319)
T PF04840_consen 141 YSKSKNDAFEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFW 211 (319)
T ss_pred HHhcchhHHHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHH
Confidence 000010111111 111111211110 111111122233334444555666666666666655666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010881 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369 (498)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 369 (498)
-..+.+++..+++++-..+... . - ++..|..++.+|.+.|+..+|..++.+++ +.
T Consensus 212 ~lki~aLa~~~~w~eL~~fa~s---k-K--------------sPIGyepFv~~~~~~~~~~eA~~yI~k~~-------~~ 266 (319)
T PF04840_consen 212 WLKIKALAENKDWDELEKFAKS---K-K--------------SPIGYEPFVEACLKYGNKKEASKYIPKIP-------DE 266 (319)
T ss_pred HHHHHHHHhcCCHHHHHHHHhC---C-C--------------CCCChHHHHHHHHHCCCHHHHHHHHHhCC-------hH
Confidence 6666666666666655543321 1 0 23455556666666666666666665532 12
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 010881 370 ALLNACRVHGDVDLGKET 387 (498)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~ 387 (498)
.-+..|.+.|++.+|.+.
T Consensus 267 ~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 267 ERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 334455555665555543
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.0084 Score=54.37 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA-CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (498)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999998543 2233334333333 23356777799999988876 47788999999999
Q ss_pred HHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881 265 YAKCGCIETACSVFDSMPNR------DVFAYTSLISGLANHDQSASAIELFMRMQLE 315 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (498)
+...|+.+.|..+|++.... ....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988752 3358999999989999999999999998874
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.002 Score=57.29 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHE---GVHVL 404 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 404 (498)
...|...+..+.+.|++++|...|+.+ ...|+ ...+..+...|...|++++|...|+.+++..|+++ .++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345666666667789999999999998 44454 34677788899999999999999999999888754 45666
Q ss_pred HHHHhHhcCCcchHHHHHHhhhhC
Q 010881 405 LSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
++.++...|++++|.+++++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788899999999999999988754
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.0012 Score=45.90 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=55.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
-..|.+.+++++|.++++.+ ...| +...|......+...|++++|.+.++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 45788999999999999998 5556 6777778888999999999999999999999998875443
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.013 Score=44.99 Aligned_cols=106 Identities=11% Similarity=-0.003 Sum_probs=72.1
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHH
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL---DIILGTAIIDMY 265 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 265 (498)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++...... +. +..+...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 45567788999999999999988886655 3355667777888899999999998877652 21 222233334466
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 010881 266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLA 297 (498)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 297 (498)
...|+.++|.+.+-....++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889998888876655444445554444443
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.25 E-value=0.0069 Score=55.33 Aligned_cols=132 Identities=11% Similarity=-0.053 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM------- 359 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 359 (498)
.|..|...|.-.|+++.|+..-+.-+.- .+.+|-.. ....+..+..++.-.|+++.|.+.|+..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~i--------a~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEI--------AQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHH--------HHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 5566666666778888877654432221 11112211 3678889999999999999999998865
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 360 P-IEPDNYVLGALLNACRVHGDVDLGKETVESLVE----RS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 360 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
+ ......+..+|...|.-..++++|+.++.+-+. ++ .....++..|+.++...|..+.|..+.+...+
T Consensus 269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 223455666788888888899999998887554 22 34566889999999999999999987776654
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.21 E-value=0.0038 Score=52.27 Aligned_cols=96 Identities=9% Similarity=0.128 Sum_probs=72.0
Q ss_pred HHHhhC--CCCChhHHHHHHHHHHh-----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------
Q 010881 175 QMFDKM--PEKNAVSWSAMINGYVQ-----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL-------------- 233 (498)
Q Consensus 175 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 233 (498)
..|+.. ...+..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34567777777777764 467777788888888889999999999998876432
Q ss_pred --CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010881 234 --GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270 (498)
Q Consensus 234 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (498)
.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3456678888999999999999999888888865543
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.20 E-value=0.041 Score=53.44 Aligned_cols=232 Identities=10% Similarity=-0.035 Sum_probs=119.6
Q ss_pred HHHHHHHHhhcCCCCChhH--HHHHhhhcCCCCcchHH-HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 010881 22 AVGKIIGFCSASDIGDLSH--GYRLFVCLQYRTTFIWN-TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC 98 (498)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~~--A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (498)
.++.-=.+|.+. .+..- ..--++++.++....-. .+...|+-+|++.+|-++|.+- |.. +..+..|
T Consensus 600 ~f~~ARkAY~rV--Rdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmy 668 (1081)
T KOG1538|consen 600 DFETARKAYIRV--RDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS---GHE------NRALEMY 668 (1081)
T ss_pred hhHHHHHHHHHH--hccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHH
Confidence 344445667776 44333 33334444443332222 2345566677888887777653 222 2233333
Q ss_pred HccCCcHHHHHH------------HHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHc
Q 010881 99 ADTSCLFVGLIC------------HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166 (498)
Q Consensus 99 ~~~g~~~~a~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 166 (498)
...+.++.|.++ .+.-.+ +..+..--.+...++...|+.++|..+ ++.
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i------------------~~d 728 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI------------------CGD 728 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh------------------hhc
Confidence 333333333332 222111 111111112334445556666655544 334
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010881 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV 246 (498)
Q Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 246 (498)
.|-.+.+.++-+++...+..+...+...+.+...+.-|-++|.+|-.. ..+++.....+++.+|..+-+..
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 455556666666665555555555555555666677777777766432 24455556667777777665554
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE 315 (498)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (498)
.+. . ..+|....+-++...++++|.+. |.+.|+-.+|.++++++...
T Consensus 800 Pe~--~--~dVy~pyaqwLAE~DrFeEAqkA------------------fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 800 PEF--K--DDVYMPYAQWLAENDRFEEAQKA------------------FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ccc--c--ccccchHHHHhhhhhhHHHHHHH------------------HHHhcchHHHHHHHHHhhhh
Confidence 432 2 23444555566666777776664 44566677777777776543
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.27 Score=48.95 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
|...|..-+.+++..+++++-+++-+... ++.-|.-++.+|.+.|+.++|..++.+.-. +.....+|.+
T Consensus 714 dKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~ 782 (829)
T KOG2280|consen 714 DKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLR 782 (829)
T ss_pred chhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHH
Confidence 44555555555555555555555544431 133444455555556665555555543311 1144455555
Q ss_pred cCCcchHHHH
Q 010881 412 TEQWNGVEKV 421 (498)
Q Consensus 412 ~g~~~~a~~~ 421 (498)
.|++.+|.++
T Consensus 783 ~~~~~eAad~ 792 (829)
T KOG2280|consen 783 VGDVKEAADL 792 (829)
T ss_pred hccHHHHHHH
Confidence 5555555544
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.16 E-value=0.15 Score=45.00 Aligned_cols=62 Identities=11% Similarity=-0.114 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG--IVGALTACAFLGALDQGRWIHAYVDRN 249 (498)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (498)
+-.....+...|++++|...|+++...-..+.... ...+..++.+.+++++|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33344555667777777777777766422221111 123344555666666666666666554
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.33 Score=48.38 Aligned_cols=332 Identities=11% Similarity=0.041 Sum_probs=181.4
Q ss_pred HHhCCCchHHHHHHHHhH--------HCCCCCCcchHHH-----HHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881 63 FAEKNEPIKAFALYKQML--------RSDFLPNNYTFSF-----ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL 129 (498)
Q Consensus 63 ~~~~~~~~~A~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (498)
+.+..++++-..+.+..+ ..|++.+..-|.. ++.-+...+.+..|.++-..+...-..- ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 334445555444444332 3366655555543 5666777788888888877664322121 5666667
Q ss_pred HHHHHhCCCh--hhHHHHh-hccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhCCCC--------ChhHHHHHHHHHH
Q 010881 130 LHLYATCNCM--DPARKLF-DMSVN--RDVISWTSLINGYAKSGQISIARQMFDKMPEK--------NAVSWSAMINGYV 196 (498)
Q Consensus 130 ~~~~~~~g~~--~~a~~~~-~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~ 196 (498)
..-+.+..+. +++.+.+ +++.. .+..+|..+.+..-.+|+.+.|..+++.=+.. +..-+..-+.-..
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 7766665322 2233333 33434 45677888888888889999999888754432 2223444455556
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010881 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276 (498)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 276 (498)
..|+.+-...++-.+.+. .+...|...+ .+...|..+|.+..+..-. ..+-+.|-...+...+-.
T Consensus 558 es~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~ 622 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALAS 622 (829)
T ss_pred hcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhh
Confidence 667766666666655542 1111221111 2334455555444332101 111222222222222111
Q ss_pred H-HhhCC-----CCChhHHHHHHHHHHhcCCh---HHHH-------HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881 277 V-FDSMP-----NRDVFAYTSLISGLANHDQS---ASAI-------ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340 (498)
Q Consensus 277 ~-~~~~~-----~~~~~~~~~li~~~~~~~~~---~~a~-------~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 340 (498)
+ ++... ++-.........++++.... ++|. .+.+.+. ..++..-..-+.+--+
T Consensus 623 ~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le-----------~q~~~~f~dlSl~dTv 691 (829)
T KOG2280|consen 623 FHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE-----------DQFGGSFVDLSLHDTV 691 (829)
T ss_pred hhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-----------HHhccccccCcHHHHH
Confidence 1 11110 11111222233334433321 1111 1222222 2233333344556667
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH
Q 010881 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420 (498)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 420 (498)
.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+.. .+ |--|.-...+|.+.|+.+||.+
T Consensus 692 ~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAksk---ks--PIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSK---KS--PIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---CC--CCCchhHHHHHHhcccHHHHhh
Confidence 77778899999999999887 478888888888999999988766655432 22 4468888899999999999999
Q ss_pred HHHhhhh
Q 010881 421 VRRGMED 427 (498)
Q Consensus 421 ~~~~m~~ 427 (498)
++.+...
T Consensus 766 Yiprv~~ 772 (829)
T KOG2280|consen 766 YIPRVGG 772 (829)
T ss_pred hhhccCC
Confidence 9977754
No 203
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=0.00032 Score=40.13 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (498)
+|+++++++|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.13 E-value=0.001 Score=40.80 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 407 (498)
.++..+..+|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788999999999999999999999999999988877754
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.10 E-value=0.011 Score=52.75 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP--- 363 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--- 363 (498)
.|..-+..+.+.|++++|...|+.+... .|+. .. ....+..+..+|...|++++|...|+.+ ...|
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s------~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDS------TY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCC------cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4555454456679999999999999885 3441 11 1356778999999999999999999998 2223
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
....+..+...+...|+.+.|...|+.+++..|++..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 3555666677788999999999999999999998763
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.10 E-value=0.0021 Score=60.17 Aligned_cols=63 Identities=8% Similarity=-0.025 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDN----YVLGALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|++++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666666666666666664 445542 23666666666666666666666666665
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.017 Score=49.67 Aligned_cols=161 Identities=7% Similarity=-0.047 Sum_probs=113.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881 258 GTAIIDMYAKCGCIETACSVFDSMPNR----------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327 (498)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 327 (498)
++.|.+.+.-..-+++-...++.-..| -....+.++..+.-.+.+.-.+..+.+..+..
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~----------- 207 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY----------- 207 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----------
Confidence 344555554444444444444433221 12344556666777788888888888888752
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
.+.++.....|+..-.+.||.+.|...|++. ++.-+..+.......+.-++++..|...+++++..+|.++
T Consensus 208 -~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 208 -PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred -CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 2235777888888889999999999999854 3333333444444566778899999999999999999998
Q ss_pred hHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
...+.-+-++.-.|+..+|++.++.|.+...
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 8777777778888999999999999987543
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.017 Score=51.03 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---CCHHHHHHHHHhC-C
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---GMLEAAKKVVREM-P 360 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~ 360 (498)
|...|-.|...|...|+.+.|..-|.+..+ +.|+ +...+..+..++... .+-.++..+|+++ .
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~-----------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGD-----------NPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCC-----------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 677888888888888888888888888776 3444 566777777766543 2456788888888 5
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
..| |..+...|...+...|++.+|...|+.|++..|.+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 566 666677777788999999999999999999887654
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.03 E-value=0.13 Score=41.96 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
|++..--.|..++.+.|+..+|...|++... .|....-.+.++....++...|...++.+.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3333334444444444444444444444332 2333344444444444444444444444444
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.99 E-value=0.069 Score=51.95 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc
Q 010881 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA 346 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (498)
..|=.+.+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+ ...+++.....
T Consensus 728 d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------------------~ksiVqlHve~ 786 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------------------LKSLVQLHVET 786 (1081)
T ss_pred cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------------------HHHHhhheeec
Confidence 344445555555555555555555555556666677777888877743 23467788888
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881 347 GMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVES 390 (498)
Q Consensus 347 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (498)
+++++|..+-++. .+.|+. |.....-++...++++|.+.|.+
T Consensus 787 ~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDDV--YMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ccchHhHhhhhhCccccccc--cchHHHHhhhhhhHHHHHHHHHH
Confidence 8888888888887 444443 33444555666777777665543
No 211
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.023 Score=52.24 Aligned_cols=61 Identities=5% Similarity=-0.089 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
++..+..+|.+.+++..|++..+++++.+|++..+.+.-+.+|...|+++.|+..|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555555555543
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.0072 Score=48.86 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
...++..+...|+++.|.++++.++..+|-+...+..++.+|...|+..+|.++|+++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445566778899999999999999999999999999999999999999999999998853
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.051 Score=46.86 Aligned_cols=160 Identities=11% Similarity=0.026 Sum_probs=113.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010881 156 SWTSLINGYAKSGQISIARQMFDKMPEK----------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225 (498)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 225 (498)
.|+.|++.+.-...+++-+..++.-..| -....+.++..+.-.|.+.-....+++..+...+.+......
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3555555554444444444444433322 223455677777778888888999999988766667777788
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH-----HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI-----IDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA 297 (498)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 297 (498)
+.+...+.|+.+.|...|+...+..-..|....+.+ ...|.-.+++..|...|.++.. .|+..-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 888888999999999999988765445555444443 3355667889999999988875 35666666655666
Q ss_pred hcCChHHHHHHHHHHHHc
Q 010881 298 NHDQSASAIELFMRMQLE 315 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~ 315 (498)
-.|+..+|++.++.|+..
T Consensus 298 Ylg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 689999999999999875
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.93 E-value=0.051 Score=46.67 Aligned_cols=62 Identities=8% Similarity=-0.045 Sum_probs=37.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 010881 59 MIRGFAEKNEPIKAFALYKQMLRSDFL--PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120 (498)
Q Consensus 59 li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 120 (498)
....+...|++.+|+..|+.+...-.. --....-.+..++.+.|+++.|...+++.++.-+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 344556678888888888888763210 11223445666777888888888888888776554
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.92 E-value=0.022 Score=44.65 Aligned_cols=123 Identities=13% Similarity=0.037 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH-HHHHHH
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM----PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV-HVLLSN 407 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~ 407 (498)
..+-.-.....+.|++++|.+.|+.+ +..| ....-..++.+|.+.++++.|...+++.+++.|.++.+ |.....
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33444455667899999999999998 3333 45566778999999999999999999999999997754 444444
Q ss_pred HhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCc
Q 010881 408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN 482 (498)
Q Consensus 408 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 482 (498)
++..-...+ ..+..+. +. ++......+....+.++.+...++.|-+|..
T Consensus 91 gL~~~~~~~---~~~~~~~--~~---------------------drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 91 GLSYYEQDE---GSLQSFF--RS---------------------DRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHHhh---hHHhhhc--cc---------------------ccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 444333222 1221111 11 1222344567777777777777777766653
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.54 Score=46.53 Aligned_cols=184 Identities=10% Similarity=0.004 Sum_probs=100.5
Q ss_pred hhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCC--------CcchHHHHHHHHHccCCcHHHH
Q 010881 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLP--------NNYTFSFILRACADTSCLFVGL 108 (498)
Q Consensus 38 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p--------~~~~~~~ll~~~~~~g~~~~a~ 108 (498)
+++|.+..+. .|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+. +--|++++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 4455555442 466677888887776666777777766655331 2211 0000011111 2247888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-----ChhhHHHHHHHHHccCCHHHHHHHHhhCCC-
Q 010881 109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-----DVISWTSLINGYAKSGQISIARQMFDKMPE- 182 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~- 182 (498)
+++-++-+++ ..+..+.+.|++-...++++..-.. -..+|+.+...++....+++|.+.|.....
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 8877665543 3456667777777777777654322 124566666666666666666666554431
Q ss_pred ------------------------CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881 183 ------------------------KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238 (498)
Q Consensus 183 ------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 238 (498)
.+....-.+...+.+.|.-++|.+.|-+-- .|. ..+..|...+++.+
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGE 896 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHH
Confidence 134444555666666666666665553321 121 23445555556655
Q ss_pred HHHHH
Q 010881 239 GRWIH 243 (498)
Q Consensus 239 a~~~~ 243 (498)
|.++-
T Consensus 897 avela 901 (1189)
T KOG2041|consen 897 AVELA 901 (1189)
T ss_pred HHHHH
Confidence 55543
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.37 Score=44.29 Aligned_cols=270 Identities=14% Similarity=0.064 Sum_probs=145.5
Q ss_pred CCChhhHHHHhhc---cCCCChhhHHHHHHHH--HccCCHHHHHHHHhhCCCCChhH----HHHHHHHHHhCCCHhHHHH
Q 010881 136 CNCMDPARKLFDM---SVNRDVISWTSLINGY--AKSGQISIARQMFDKMPEKNAVS----WSAMINGYVQVDLFKEALE 206 (498)
Q Consensus 136 ~g~~~~a~~~~~~---~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~ 206 (498)
.|+-..|.++-.+ ....|......++.+- .-.|+.+.|.+-|+.|... +.+ ...|.-..-+.|+.+.|..
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 3444555554433 2233444444444332 2346667777777666531 111 2222223345566666666
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCChhH--HHHHHHHHH---hcCCHHHHHHHHh
Q 010881 207 HFNYMQLCGFRPN-HAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIIL--GTAIIDMYA---KCGCIETACSVFD 279 (498)
Q Consensus 207 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~ 279 (498)
+-++.-.. .|. .-.....+...+..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|...-.
T Consensus 176 yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 176 YAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 66655443 222 2345566666677777777777766544332 2333211 112222111 1123444444433
Q ss_pred hCCC--CChhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 010881 280 SMPN--RDVFA-YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356 (498)
Q Consensus 280 ~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 356 (498)
+..+ ||... --.-..++.+.|+..++-.+++.+-+....|+ +...|.+..--+.++.-+
T Consensus 254 ~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------------------ia~lY~~ar~gdta~dRl 315 (531)
T COG3898 254 EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------------------IALLYVRARSGDTALDRL 315 (531)
T ss_pred HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------------------HHHHHHHhcCCCcHHHHH
Confidence 3332 44332 22234578888888888888888877643333 233343333323344434
Q ss_pred HhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc-CCcchHHHHHHhhhh
Q 010881 357 REM----PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST-EQWNGVEKVRRGMED 427 (498)
Q Consensus 357 ~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 427 (498)
++. .++| +..+...+..+....|++..|..--+.+....|... .|..|+.+-... |+-.++...+-+..+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333 4556 566666777788888999888888888888888764 677777776554 887777777755543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.81 E-value=0.0023 Score=45.24 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---chHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVER----SLDH---EGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
.+|+.+...|...|++++|+..|+++++. ++++ ..++..++.++...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666666642 1111 2345566666777777777776666553
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.78 E-value=0.0027 Score=44.90 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-------P-IEPD-NYVLGALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
..+++.+..+|...|++++|+..|++. + -.|+ ..++..+...+...|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 568899999999999999999999887 2 1222 567888899999999999999999998764
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.60 E-value=0.02 Score=43.54 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=76.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----hHHHHHHHHhHhcC
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE----GVHVLLSNIYASTE 413 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 413 (498)
.-++...|+++.|++.|.+. .+-| .+..||.-..++.-+|+.++|++-+++++++.-+.. ..|..-+..|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 44677899999999999987 4444 788999999999999999999999999999763323 24667778899999
Q ss_pred CcchHHHHHHhhhhCCcc
Q 010881 414 QWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 414 ~~~~a~~~~~~m~~~~~~ 431 (498)
+-+.|..-|+...+.|-+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 999999999998887753
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.47 E-value=0.097 Score=49.53 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=97.3
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHHc-CCCCCchhhhhhCCCCChHHHHHHHHHHhh---------cCCH
Q 010881 287 FAY--TSLISGLANH-----DQSASAIELFMRMQLE-GVVPNESMSEIYGIEPGVQHYGCLVDLLGR---------AGML 349 (498)
Q Consensus 287 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~ 349 (498)
..| ..++.+.... ...+.|+.+|.+.... .+.|+ ....|..+..++.. ..+.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----------~a~a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----------KTECYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----------cHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 556 6666665542 2346788889998732 24454 35566655554432 2345
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 350 EAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 350 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.+|.++-++. .+.| |+.....+..+....++++.|..+|+++..++|+...++...+..+.-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5666776666 4455 7888888888888888899999999999999999999999999999999999999999988655
Q ss_pred CC
Q 010881 428 NE 429 (498)
Q Consensus 428 ~~ 429 (498)
..
T Consensus 401 Ls 402 (458)
T PRK11906 401 LE 402 (458)
T ss_pred cC
Confidence 43
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.46 E-value=0.49 Score=40.61 Aligned_cols=60 Identities=10% Similarity=-0.104 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLCGFRP--NHAGIVGALTACAFLGALDQGRWIHAYVDRN 249 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (498)
.....+...|++.+|...|+.+....... -......+..++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455566777777777777776542111 1123334455556666666666666665544
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.45 E-value=0.81 Score=42.98 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSMPN-----RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 329 (498)
..+|...+++-.+..-++.|..+|-++.+ +++..+++++..++ .|+..-|..+|+--+.. .||
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d--------- 464 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPD--------- 464 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCC---------
Confidence 45677788888888889999999988765 57888999998766 56777888888876653 233
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
+..--+..+..+.+.++-..|..+|+.. .+..+ ...|..+|..-..-|+...+..+-+++.++-|...
T Consensus 465 --~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 465 --STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred --chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 2333455677778899999999999965 33333 56889999988999999999999999998888764
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.21 Score=42.73 Aligned_cols=206 Identities=13% Similarity=0.104 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (498)
.|..-..+|-...++++|...+.+..+. ..-+...|. ....+++|.-+.+++.+. +--+..|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444556677777888887766665431 111111111 122345555555555543 223455667777888
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc
Q 010881 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA 346 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (498)
.+|..+.|-..+++.-+ ....-++++|+++|.+...- +.-++ ....-...+......+.+.
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~d------r~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDD------RDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-Hhccc------hHHHHHHHHHHhhhHhhhh
Confidence 88888877776665421 23445667777777665442 11110 0111234566667778888
Q ss_pred CCHHHHHHHHHhC-C------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHhHhcCC
Q 010881 347 GMLEAAKKVVREM-P------IEPD-NYVLGALLNACRVHGDVDLGKETVESLVE----RSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 347 g~~~~A~~~~~~~-~------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~ 414 (498)
..+++|-..+.+- + -.++ -..|-..|-.+.-..++..|...++...+ .++++..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 8888877666554 1 1122 23355556667777899999999988665 3455666777777766 4567
Q ss_pred cchHHHHH
Q 010881 415 WNGVEKVR 422 (498)
Q Consensus 415 ~~~a~~~~ 422 (498)
.+++..++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 67766654
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.068 Score=49.25 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (498)
..++..|.-++.+.+++.+|++..++. ... +|...+-.-..+|...|+++.|+..|++++++.|.+-.+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456788899999999999999998887 434 478888888889999999999999999999999999888888887777
Q ss_pred hcCCcchH-HHHHHhhhhC
Q 010881 411 STEQWNGV-EKVRRGMEDN 428 (498)
Q Consensus 411 ~~g~~~~a-~~~~~~m~~~ 428 (498)
+..++.+. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 76666554 6788888653
No 226
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.37 E-value=1.2 Score=44.28 Aligned_cols=133 Identities=10% Similarity=0.006 Sum_probs=70.3
Q ss_pred CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQV 114 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 114 (498)
|.+++|++++-.+.++|. .|....+.|++-...++++.=-.. +-..-...|+.+-..+.....++.|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999998887764 455666677777666665431100 00011234666666666666677776666543
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC
Q 010881 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183 (498)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 183 (498)
... ...+.++.+..++++-+.+.+.++ .+....-.+..++.+.|.-++|.+.|-+...|
T Consensus 823 ~~~---------e~~~ecly~le~f~~LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 823 GDT---------ENQIECLYRLELFGELEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred cch---------HhHHHHHHHHHhhhhHHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 211 123444444444444443333332 22333344445555555555555555444433
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.025 Score=49.34 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHH
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH---EGVHVL 404 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 404 (498)
.|+.-++. .+.|++.+|...|... ...|+... -|..++...|++++|..+|..+.+..|++ +..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46655554 4677799999999987 23344444 48899999999999999999999977664 467889
Q ss_pred HHHHhHhcCCcchHHHHHHhhhhC
Q 010881 405 LSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
|+.+..+.|+.++|..+|++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.33 E-value=0.061 Score=41.76 Aligned_cols=87 Identities=20% Similarity=0.130 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCch-----hhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-----MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM- 359 (498)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 359 (498)
..++.++|.++++.|+.+....+++.. -|+.++.. ........|+..+..+++.+|+..|++..|.++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs 79 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFS 79 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 456677777777777777777777554 23333320 1111245566667777777777777777777666655
Q ss_pred ---CCCCCHHHHHHHHHH
Q 010881 360 ---PIEPDNYVLGALLNA 374 (498)
Q Consensus 360 ---~~~p~~~~~~~l~~~ 374 (498)
+++.+...|..|+.-
T Consensus 80 ~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 80 RKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 554556666666653
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.31 E-value=0.027 Score=53.02 Aligned_cols=67 Identities=12% Similarity=-0.069 Sum_probs=62.2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 362 EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG---VHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 362 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
.| +...++.+..+|...|++++|+..|+++++++|++.. +|+.++.+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34 7889999999999999999999999999999999885 4999999999999999999999999875
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.30 E-value=0.99 Score=42.44 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 010881 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD 364 (498)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 364 (498)
...|..++....+..-.+.|..+|-+..+.|+ +.+++..+++++..++ .|+...|..+|+-- ..-||
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-----------~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d 464 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-----------VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD 464 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----------CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC
Confidence 34677788888888889999999999988863 3446888999888776 57788899999865 33444
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 365 NY-VLGALLNACRVHGDVDLGKETVESLVERSLD--HEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 365 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.. .-+..+.-+...++-+.|..+|+..++.--. -...|..++..-..-|+...|..+=++|.+
T Consensus 465 ~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 465 STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 43 3455677778889999999999976653222 234677777777777877766666555543
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.11 E-value=0.13 Score=40.00 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM------------------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
|..++..++.++++.|+++....+++.. +..|+..++.+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3578899999999999999999999876 2457889999999999999999999999999998
Q ss_pred cCC--CCchHHHHHHHHh
Q 010881 394 RSL--DHEGVHVLLSNIY 409 (498)
Q Consensus 394 ~~~--~~~~~~~~l~~~~ 409 (498)
.-| -+..++..|..-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 653 2345666665433
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.02 E-value=0.38 Score=45.70 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=96.4
Q ss_pred CHHHHHHHHhhCC---CCC---hhHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChH
Q 010881 270 CIETACSVFDSMP---NRD---VFAYTSLISGLAN---------HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334 (498)
Q Consensus 270 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~ 334 (498)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++.++..+. .|+ |..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~-----------Da~ 339 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTV-----------DGK 339 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCC-----------CHH
Confidence 3567777888777 323 3334433333221 22345667777777664 333 688
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH--HHHHhH
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYA 410 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~ 410 (498)
....+..++.-.++++.|...|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|.....-.. .+..|+
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 8888888888899999999999998 67775 5556556666778899999999999999999987655443 333455
Q ss_pred hcCCcchHHHHHH
Q 010881 411 STEQWNGVEKVRR 423 (498)
Q Consensus 411 ~~g~~~~a~~~~~ 423 (498)
.. ..++|++++-
T Consensus 420 ~~-~~~~~~~~~~ 431 (458)
T PRK11906 420 PN-PLKNNIKLYY 431 (458)
T ss_pred CC-chhhhHHHHh
Confidence 54 4577888763
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.97 E-value=1.4 Score=41.20 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
+---+.+++.++.-.|+.++|.+.++++....|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33345667788888889999999999988887654
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.93 E-value=1.5 Score=41.30 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=76.0
Q ss_pred HHhcCC-HHHHHHHHhhCCC---CChhHHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881 265 YAKCGC-IETACSVFDSMPN---RDVFAYTSLI----SGLAN---HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333 (498)
Q Consensus 265 ~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 333 (498)
+.+.|. -++|.++++.+.. .|...-|.+. .+|.+ .....+-+.+-+-+.+.|+.|- ...+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i--------~i~e~ 460 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI--------TISEE 460 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc--------cccHH
Confidence 344554 6778888877664 3444333322 22322 1233444444444555665553 12245
Q ss_pred HHHHHHHHH--HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881 334 QHYGCLVDL--LGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESL 391 (498)
Q Consensus 334 ~~~~~l~~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 391 (498)
..-|.|.++ +...|++.++.-.-.-+ .+.|++.+|..+.-+.....++++|..++..+
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 566666654 56789999987665555 78899999999998999999999999988765
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.15 Score=44.67 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP 363 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 363 (498)
.|+.-+. +...|++..|...|...++. -|+. .+.| ..+.-|..++...|+++.|..+|..+ +-.|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s------~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNS------TYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCC------cccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 4665554 45577799999999999886 3442 2333 44555999999999999999999888 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
-+..+..|.....+.|+.++|...|+++++..|..+.+-
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 356778888899999999999999999999999976543
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.89 E-value=0.32 Score=45.34 Aligned_cols=153 Identities=9% Similarity=-0.021 Sum_probs=75.1
Q ss_pred HHHhCCCchHHHHHHHHhHHCCC--CCCcc-hHHHHHHHHHc---cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 010881 62 GFAEKNEPIKAFALYKQMLRSDF--LPNNY-TFSFILRACAD---TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT 135 (498)
Q Consensus 62 ~~~~~~~~~~A~~~~~~m~~~~~--~p~~~-~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (498)
+|....+++..+++.+.+..... .++.. .--...-++.+ .|+.++|++++..++.....++..++..+...|..
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45555666666666666654210 01111 11112223333 56666666666665544445555555555544322
Q ss_pred ---------CCChhhHHHHhhccCCCChhhHH-----HHHHHHHccC-CHHHHHHHH---hhC------C--CCChhHHH
Q 010881 136 ---------CNCMDPARKLFDMSVNRDVISWT-----SLINGYAKSG-QISIARQMF---DKM------P--EKNAVSWS 189 (498)
Q Consensus 136 ---------~g~~~~a~~~~~~~~~~~~~~~~-----~li~~~~~~~-~~~~A~~~~---~~~------~--~~~~~~~~ 189 (498)
....+.|...|.+.-+.+...|+ +|+....... .-.+..++- ..+ . ..+-..+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~A 309 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVA 309 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 12355666666665433322221 1222111100 011111111 110 1 12445567
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHc
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLC 214 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~ 214 (498)
+++.+..-.|+.++|.+.+++|.+.
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 8888999999999999999999876
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.76 E-value=0.55 Score=45.43 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=85.5
Q ss_pred HHHhCCCchHHHHHHH--HhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 62 GFAEKNEPIKAFALYK--QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 62 ~~~~~~~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
...-.++++++.++.+ ++.. .+ | ..-...++..+-+.|.++.|+++.. |+. .-.....++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 3444677777666654 1111 12 1 3336667777777788877776532 222 234555677888
Q ss_pred hhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC
Q 010881 140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219 (498)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 219 (498)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.++..++.+.....|-
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 88877776554 555777777777777787777777777653 55666667777777666666666555441
Q ss_pred HHHHHHHHHHHhccCChHHHHHHH
Q 010881 220 HAGIVGALTACAFLGALDQGRWIH 243 (498)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~ 243 (498)
++....++.-.|+.++..+++
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444455555555444
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.76 E-value=0.32 Score=44.19 Aligned_cols=130 Identities=13% Similarity=0.010 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC
Q 010881 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PI 361 (498)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 361 (498)
.-++..++...+.++++++.|+...+--...+ .......++..|...|.+..|+++|.-+..+. ++
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l 197 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNND-------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL 197 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence 33455667777778888888887765322222 11223567778888888888888877665554 32
Q ss_pred CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----chHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 362 EPDNYVL-----GALLNACRVHGDVDLGKETVESLVERS--LDH----EGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 362 ~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
..-...| ..|.-++...|....|.+..+++.++. ..+ ......++.+|...|+.+.|+.-|+..
T Consensus 198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2212222 334456788888888888888876632 222 223446788888888888877766554
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=95.76 E-value=0.43 Score=38.55 Aligned_cols=84 Identities=11% Similarity=-0.006 Sum_probs=59.3
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHH
Q 010881 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP---NRDVFAYTSLISGLANHDQSASAI 306 (498)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 306 (498)
+...|++++|..+|+.+.-.+ +.+...+..|..++-..+++++|...|.... ..|+..+.....+|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 356677777777777776665 4556666777777777778888877776432 346666666777777788888888
Q ss_pred HHHHHHHH
Q 010881 307 ELFMRMQL 314 (498)
Q Consensus 307 ~~~~~m~~ 314 (498)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 87777766
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.72 E-value=0.39 Score=47.11 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CC---------hhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchh
Q 010881 258 GTAIIDMYAKCGCIETACSVFDSMPN-RD---------VFAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESM 323 (498)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---------~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 323 (498)
+..++....=.|+-+.+++.+....+ ++ ...|...+..++. ....+.|.+++..+... -|
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP---- 264 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YP---- 264 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CC----
Confidence 34455555556666766666665543 11 1244555544443 34667888888888774 23
Q ss_pred hhhhCCCCChHHH-HHHHHHHhhcCCHHHHHHHHHhC-C----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881 324 SEIYGIEPGVQHY-GCLVDLLGRAGMLEAAKKVVREM-P----I-EPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 324 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
+...| ..-...+...|++++|.+.|++. . . +.....+.-+...+....++++|.+.+.++.+.+.
T Consensus 265 --------~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 265 --------NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred --------CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 33333 33356677789999999999875 1 1 12344556666778888999999999999998765
Q ss_pred CCchHHH-HHHHHhHhcCCc-------chHHHHHHhhhh
Q 010881 397 DHEGVHV-LLSNIYASTEQW-------NGVEKVRRGMED 427 (498)
Q Consensus 397 ~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 427 (498)
-+...|. ..+.++...|+. ++|.+++.+...
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5544444 455566677888 788888877754
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.70 E-value=2.1 Score=41.08 Aligned_cols=189 Identities=15% Similarity=0.055 Sum_probs=106.6
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (498)
.+|.-.-+..+.+.-++.-++.++ +.||..+...++. --......++.+++++..+.|- ..+..- ......|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA-EEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhccc
Confidence 344444556666666666666665 3566544433332 2234457888888888776651 011000 0000111
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH
Q 010881 270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML 349 (498)
Q Consensus 270 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 349 (498)
..-+. ...+-..+-+.+-..|..+.-+.|+.++|.+.+++|.+.. |. .-+......|+.++...+.+
T Consensus 245 ~~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~---------~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 245 HFWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PN---------LDNLNIRENLIEALLELQAY 311 (539)
T ss_pred chhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cc---------cchhhHHHHHHHHHHhcCCH
Confidence 11010 1111111223344456667778899999999999998752 11 11355778899999999999
Q ss_pred HHHHHHHHhC-CC-CCC--HHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhcCCCCc
Q 010881 350 EAAKKVVREM-PI-EPD--NYVLGALLNACRVHGD---------------VDLGKETVESLVERSLDHE 399 (498)
Q Consensus 350 ~~A~~~~~~~-~~-~p~--~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~~~~~ 399 (498)
.++..++.+. .+ -|. ..+|+..+--....++ -..|.+.+.++++.+|.-+
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 9999999887 22 232 4456665433333332 1346678888888777543
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.67 E-value=0.066 Score=43.21 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
..++..+...|++++|..+..++... .|- +...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~-----------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL--DPY-----------DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--STT------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--CCC-----------CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444555566666666666666553 121 4556666666666666666666666544
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.58 E-value=1 Score=43.64 Aligned_cols=159 Identities=10% Similarity=0.004 Sum_probs=105.2
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010881 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176 (498)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 176 (498)
...-.++++.+.++.+.-.-. +..+..-.+.++..+.+.|..+.|+++... + ..-.....+.|+++.|.++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHH
Confidence 344567788766655311100 112245578889999999999999988642 2 2334556788999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh
Q 010881 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256 (498)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (498)
-++.. +...|..|.....+.|+++-|...|.+..+ |..++-.|...|+.+.-.++.+.....|
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------ 403 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------ 403 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------
Confidence 88776 667999999999999999999999988653 4566666778888888888877777666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
-++....++.-.|+.++..+++.+.
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2455555566678888877776554
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.57 E-value=0.078 Score=46.24 Aligned_cols=101 Identities=13% Similarity=0.040 Sum_probs=80.0
Q ss_pred hHHHHHhhhcC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccC---------
Q 010881 39 SHGYRLFVCLQ--YRTTFIWNTMIRGFAEK-----NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS--------- 102 (498)
Q Consensus 39 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--------- 102 (498)
-..+..|+..+ ++|-.+|-..+..+... +..+--...++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456666666 57888888888877653 566777778899999999999999999999875532
Q ss_pred -------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 103 -------CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 103 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+-+-+..++++|...|+.||..+-..|++++.+.+-.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 4456788999999999999999999999998776643
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.52 E-value=0.97 Score=36.02 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=63.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 010881 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305 (498)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 305 (498)
++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+.......+..|.+.+.++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 4444444455555556665555554 345566666777666543 2333344442 22334444456666666666666
Q ss_pred HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010881 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-GMLEAAKKVVREMPIEPDNYVLGALLNACR 376 (498)
Q Consensus 306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 376 (498)
..++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 89 ~~l~~k~~~---------------------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKDGN---------------------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHhhcC---------------------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 666666522 22223333333 6666666666652 24455655555543
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.51 E-value=0.47 Score=36.44 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 431 (498)
.....+.....+|+-+.-.+++..+...+..++.....++.+|.+.|+..++.+++++.-++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444555556666666666666555444444445556666666666666666666666665553
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.45 E-value=1.5 Score=37.88 Aligned_cols=198 Identities=16% Similarity=0.044 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hHHHHHHH-H
Q 010881 221 AGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDV-FAYTSLIS-G 295 (498)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 295 (498)
..+......+...+.+..+...+...... ........+......+...+++..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444455555555444444331 1233344444555555555556666666655543 111 22222222 5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHH
Q 010881 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD--NYVLGALL 372 (498)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~ 372 (498)
+...|+++.|...+.+.... .|. .......+......+...++.+++...+.+. ...++ ...+..+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (291)
T COG0457 140 LYELGDYEEALELYEKALEL--DPE--------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLG 209 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCC--------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhh
Confidence 66777777777777776442 110 0012333444444466677777777777776 33333 56666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
..+...++++.|...+..+....|.....+..+...+...+.++++...+.+..+.
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777788888888877777764445555665655666677777777666543
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.32 E-value=0.059 Score=30.48 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
..|..+...+...|++++|++.+++++++.|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667778888888888888888888888764
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=4 Score=41.77 Aligned_cols=208 Identities=12% Similarity=0.036 Sum_probs=128.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPEKNAV---SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 233 (498)
...-+..+.+...++-|+.+-+.-..+... ......+.+.+.|++++|...|-+-... +.|+ .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 344555566666777777766554432111 2223345566789999998888776543 3333 244555555
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHhcCChHHHHHHHHH
Q 010881 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF--AYTSLISGLANHDQSASAIELFMR 311 (498)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~ 311 (498)
.....-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 566666677788888884 4556667899999999999998888877762 222 245566677777777888776665
Q ss_pred HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881 312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391 (498)
Q Consensus 312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 391 (498)
.... -..+--.+-..+++++|+++++.++..--..+.+....-+.. ...++-..++-+.
T Consensus 489 ~~~h--------------------e~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~ 547 (933)
T KOG2114|consen 489 FKKH--------------------EWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLE-HDPEETMKILIEL 547 (933)
T ss_pred hccC--------------------HHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-hChHHHHHHHHHH
Confidence 4331 122344456678999999999998633333333333333333 3455555555554
Q ss_pred Hh
Q 010881 392 VE 393 (498)
Q Consensus 392 ~~ 393 (498)
.+
T Consensus 548 ~t 549 (933)
T KOG2114|consen 548 IT 549 (933)
T ss_pred Hh
Confidence 43
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.30 E-value=0.043 Score=31.16 Aligned_cols=32 Identities=25% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
.+|..+...|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.22 Score=44.65 Aligned_cols=116 Identities=8% Similarity=-0.034 Sum_probs=87.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHH----HH
Q 010881 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P-IEPDNYVLG----AL 371 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~----~l 371 (498)
..|+..+|-..++++++. .+.|...+...-++|.-.|+.+.-...++++ + ..|+...|. .+
T Consensus 115 ~~g~~h~a~~~wdklL~d-------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred ccccccHHHHHHHHHHHh-------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence 367778888888888874 3346777777778888888888888888877 3 355554332 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
.-++...|-+++|++..+++++++|.+.-+...++.++.-.|+++++.++..+-.
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 4456778899999999999999998888777788888888888888888776554
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.14 E-value=0.22 Score=43.53 Aligned_cols=109 Identities=11% Similarity=0.162 Sum_probs=74.2
Q ss_pred HHHHhhCC--CCChhHHHHHHHHHHh-----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 010881 174 RQMFDKMP--EKNAVSWSAMINGYVQ-----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL------------- 233 (498)
Q Consensus 174 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 233 (498)
++.|.... ++|..+|-..+..+.. .+..+-....++.|.+-|+.-|..+|+.||+.+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 33444444 4455666666555543 355666677778888888888888888888776443
Q ss_pred ---CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 010881 234 ---GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI-ETACSVFDSMP 282 (498)
Q Consensus 234 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 282 (498)
.+-+-++.++++|...|+.||-.+-..|++++.+.+-. .+..+..--|.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23455788999999999999999999999999877643 34444443343
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.95 E-value=2.3 Score=37.12 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 010881 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132 (498)
Q Consensus 55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (498)
.|+.-+ .-.+.|++++|.+.|+.+.... ..| ...+...++-++-+.++++.|....++.++.-+.....-|...|.+
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 344433 4457899999999999997642 111 3444566677788899999999999999988766555556666666
Q ss_pred HHhCCC-------hhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHH
Q 010881 133 YATCNC-------MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205 (498)
Q Consensus 133 ~~~~g~-------~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (498)
.+..-. ...+.+.|.. +..++.-|=.+.-...|......+...=...=-.+.+.|.+.|.+..|.
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~--------f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAA--------FKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHH--------HHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 552211 1111111111 1111111111111111111111111000001123456788889999999
Q ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881 206 EHFNYMQLCGFRPN---HAGIVGALTACAFLGALDQGRWIHAYVDR 248 (498)
Q Consensus 206 ~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (498)
.-+++|++. .+-+ ...+-.+..+|...|-.++|...-+-+..
T Consensus 188 nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 188 NRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 888888876 2222 23455566777777777777766554443
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.93 E-value=1.6 Score=35.66 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010881 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247 (498)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (498)
+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..+++...
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555666666666655543211 11112334455555555444444444433
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.89 E-value=6.5 Score=42.00 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHhCC--ChhhHHHHhhcc
Q 010881 124 FVLNGLLHLYATCN--CMDPARKLFDMS 149 (498)
Q Consensus 124 ~~~~~l~~~~~~~g--~~~~a~~~~~~~ 149 (498)
.....++..|.+.+ .+++++....+.
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l 818 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKEL 818 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 33445666666665 555555554433
No 256
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.88 E-value=0.093 Score=43.34 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=75.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEPD------NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
..-+.+.|++++|..-|... ..-|. ...|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34567889999999998887 22222 345555566788999999999999999999999888888889999999
Q ss_pred CCcchHHHHHHhhhhCCcc
Q 010881 413 EQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 413 g~~~~a~~~~~~m~~~~~~ 431 (498)
..+++|++=|+++.+....
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 9999999999999876543
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.73 E-value=1.7 Score=34.57 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=21.3
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 010881 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC 136 (498)
Q Consensus 93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (498)
.++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444444455555555555555442 3444555555555543
No 258
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.72 E-value=3.6 Score=38.21 Aligned_cols=285 Identities=14% Similarity=0.064 Sum_probs=174.2
Q ss_pred HHHHHHHHH--ccCCcHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhCCChhhHHHHhhccCC-CChh--hHHHHHHH
Q 010881 91 FSFILRACA--DTSCLFVGLICHAQVIRLGWESYDFVLNGLL--HLYATCNCMDPARKLFDMSVN-RDVI--SWTSLING 163 (498)
Q Consensus 91 ~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~-~~~~--~~~~li~~ 163 (498)
|-.|-.++. ..|+-..|.++-.+..+. +..|...+-.++ ..-.-.|+++.|.+-|+.|.. |... -...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 444444443 345666666655443321 122333332333 233456888888888888764 2221 22333334
Q ss_pred HHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHh---ccC
Q 010881 164 YAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAG--IVGALTACA---FLG 234 (498)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~---~~~ 234 (498)
-.+.|+.+.|...-+..-. | -...+...+...|..|+|+.|+++.+.-++.. +.++..- -..|+.+-. -..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 4567887777776665542 2 34567788899999999999999998876543 3444322 122333221 123
Q ss_pred ChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881 235 ALDQGRWIHAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMR 311 (498)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (498)
+...|...-.+..+. .|+. ...-.-..++.+.|++.++-.+++.+-+ |.+..+.. -.+.+.|+ .++.-+++
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHH
Confidence 555666655555543 4443 2333445778999999999999998865 44444432 23344444 44444444
Q ss_pred HHHc-CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 010881 312 MQLE-GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRV-HGDVDLGKETV 388 (498)
Q Consensus 312 m~~~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~ 388 (498)
.... .++|| +.+....+..+-...|++..|..--+.. ...|....|..|...-.. .||-.++..++
T Consensus 318 a~~L~slk~n-----------naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 318 AKKLESLKPN-----------NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred HHHHHhcCcc-----------chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 4322 24555 5778888888999999999888777766 667888888888776544 49999999999
Q ss_pred HHHHh
Q 010881 389 ESLVE 393 (498)
Q Consensus 389 ~~~~~ 393 (498)
-+.+.
T Consensus 387 Aqav~ 391 (531)
T COG3898 387 AQAVK 391 (531)
T ss_pred HHHhc
Confidence 98886
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.67 E-value=4 Score=38.50 Aligned_cols=34 Identities=6% Similarity=-0.168 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
+..+++...|..+.+..|.....+..++..+.+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 7888999999999999998888888777666543
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.9 Score=38.36 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHH
Q 010881 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHDQSASAIELF 309 (498)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~ 309 (498)
|...-..+...|...|+.+.|.+.+-.+.++ |...-..|+..+.-.|..+.+...+
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5666666777777777777777766555432 4455566666666555444433333
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.54 E-value=0.44 Score=36.49 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=71.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHH
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP--DNYVL 368 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~ 368 (498)
+.+..|+.+.|++.|.+.+.. .|. ....||.-..++.-.|+.++|++-+++. |-+- -...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~-----------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APE-----------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--ccc-----------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 577889999999999998763 343 5889999999999999999999999887 3121 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 369 GALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
..-...|...|+-+.|..-|+.+-+++...
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 444456888999999999999998888653
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.45 E-value=2.3 Score=41.88 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=57.3
Q ss_pred CCHHHHHHHHhhCCC--CChhHHHHH-HHHHHhCCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCChHHHHH
Q 010881 168 GQISIARQMFDKMPE--KNAVSWSAM-INGYVQVDLFKEALEHFNYMQLCG---FRPNHAGIVGALTACAFLGALDQGRW 241 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~ 241 (498)
.+.+.|.++++.+.. |+...|... .+.+...|++++|++.|++..... .+.....+--+.-.+....++++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445566666666654 444444322 344455566666666666543211 01122233334444555666666666
Q ss_pred HHHHHHHhCCCCChhHHHHHH-HHHHhcCCH-------HHHHHHHhhCC
Q 010881 242 IHAYVDRNGIELDIILGTAII-DMYAKCGCI-------ETACSVFDSMP 282 (498)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~ 282 (498)
.+..+.+.+ ..+..+|.-+. -++...|+. ++|...|.+++
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 666666543 33434443322 233345555 66666666554
No 263
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.41 E-value=7.7 Score=44.73 Aligned_cols=290 Identities=10% Similarity=0.031 Sum_probs=158.9
Q ss_pred HHHHHHHhCCChhhHHHHhhcc----CCCC-hhhHH-HHHHHHHccCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhCCC
Q 010881 128 GLLHLYATCNCMDPARKLFDMS----VNRD-VISWT-SLINGYAKSGQISIARQMFDK-MPEKNAVSWSAMINGYVQVDL 200 (498)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~-~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 200 (498)
.+..+-.+++.+.+|...+++- .+.+ ...+. .+...|+..+++|...-+... ...++ ....|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4455667888999999988873 1111 12333 344488888888887777663 33332 2334556678899
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCHHHHHHHHh
Q 010881 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG-TAIIDMYAKCGCIETACSVFD 279 (498)
Q Consensus 201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~ 279 (498)
+..|...|+.+.+.+ ++...+++-++......+.++...-..+-..... .+....+ +.=+.+-.+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 3336677777777777777777666544443322 2222222 223344456666665555433
Q ss_pred -----------------hCCCCChhHHHHHH-----------HHHHhcCChHHHHHHHHHHHH-----------cCCCCC
Q 010881 280 -----------------SMPNRDVFAYTSLI-----------SGLANHDQSASAIELFMRMQL-----------EGVVPN 320 (498)
Q Consensus 280 -----------------~~~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~m~~-----------~~~~p~ 320 (498)
.+.++|......+| .++...|-+..+.++.-++.. .++.++
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 11112222211111 111112222222222111110 112222
Q ss_pred chhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP-----DNYVLGALLNACRVHGDVDLGKETVESL 391 (498)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 391 (498)
+ ...-+..-|..-+..-....+..+-+--+++. ..+| -..+|....+.....|+++.|...+-.+
T Consensus 1623 ~------~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1623 E------DSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred c------cccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 1 00111111211111111111111111111111 1122 2557888888899999999999988888
Q ss_pred HhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.+..+ +..+...+..+...|+...|+.++++..+...
T Consensus 1697 ~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1697 KESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 87773 45789999999999999999999999886654
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.38 E-value=3 Score=35.95 Aligned_cols=197 Identities=15% Similarity=0.047 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH-H
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID-M 264 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 264 (498)
.+......+...+++..+...+...... ........+..........+.+..+...+.........+ ......... +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3334444444445555544444444331 112222333333344444444555555555444432111 111112222 5
Q ss_pred HHhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHH
Q 010881 265 YAKCGCIETACSVFDSMPNRD------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYG 337 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~ 337 (498)
+...|+++.|...+......+ ...+......+...++.+.+...+.+..... .. ....+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~ 206 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-------------PDDDAEALL 206 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-------------cccchHHHH
Confidence 666666666666666553311 1223333333566788888888888887742 11 356778
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 338 CLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
.+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888888888999999998887 44554 445555555555777899999999999988886
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=1.6 Score=39.39 Aligned_cols=49 Identities=2% Similarity=-0.208 Sum_probs=21.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC
Q 010881 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150 (498)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (498)
.|+..+|-..++++++.- +.|...+.-.-.+|.-.|+.+.-...++++.
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 344444444444444432 2233334334444444444444444444443
No 266
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.93 E-value=0.14 Score=41.08 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=52.3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHH
Q 010881 94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173 (498)
Q Consensus 94 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 173 (498)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5556666677777777777777666556677777777777777777777777763222 2234455555666666666
Q ss_pred HHHHhhCC
Q 010881 174 RQMFDKMP 181 (498)
Q Consensus 174 ~~~~~~~~ 181 (498)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66555544
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.70 E-value=2.1 Score=39.20 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CChhHH
Q 010881 188 WSAMINGYVQVDLFKEALEHFNYMQLC-GFRP---NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-----LDIILG 258 (498)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~ 258 (498)
|..+.+++-+..++.+++.+-+.-... |..| .-....++-.++...+.++++.+.|+...+.-.. ....++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 344444444444555555544433221 1112 1122333455555566666666666655443211 123567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-------CChh-HH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881 259 TAIIDMYAKCGCIETACSVFDSMPN-------RDVF-AY-----TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325 (498)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 325 (498)
-.|...|.+..|+++|.-+..+..+ .|.. -| -.|.-++...|+..+|.+.-++..+..+.-
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~------ 239 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH------ 239 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh------
Confidence 7777778888887777655544322 2222 12 223346677788888887777765421111
Q ss_pred hhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 326 IYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 326 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
|-.+ -......+.+.|...|+.+.|+.-|++.
T Consensus 240 --Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 240 --GDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred --CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1111 3556678889999999999998888765
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.67 E-value=12 Score=40.19 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=91.7
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccCChHHHHHHH
Q 010881 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC----AFLGALDQGRWIH 243 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~ 243 (498)
++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.+| .|+...+..+..+| .....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44455555444443 223333344444455555555554 56776666665555 3456677766666
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Chh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVF--AYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
+..-+. .--+.+|..+|++.+|..+..++... +.. +-..|+.-+...++.-+|-++..+....
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----- 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----- 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----
Confidence 543221 23467788888888888888877754 322 2266777788888888888888776542
Q ss_pred chhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
..-.+..|++...+++|..+....
T Consensus 1029 ---------------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---------------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---------------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 222455666667777777766554
No 269
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.65 E-value=7.9 Score=38.14 Aligned_cols=376 Identities=10% Similarity=0.025 Sum_probs=210.9
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcch---HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 010881 22 AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFI---WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC 98 (498)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (498)
.+..|+.--.+. .+++.++.+++.+...=+.+ |-.....=.+.|..+.+..+|++-.+ +++-+...|...+..+
T Consensus 47 ~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 344444433333 44556666666654322222 33344444566788888899988877 5655666666555444
Q ss_pred H-ccCCcHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHc---c-----
Q 010881 99 A-DTSCLFVGLICHAQVIRL-GWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK---S----- 167 (498)
Q Consensus 99 ~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~----- 167 (498)
. ..|+.+.....|+.++.. |.. .+...|-..+..-..++++.....+++++.+-....++..-.-|.+ .
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~ 203 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKI 203 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhh
Confidence 3 457777777888887764 322 2445566777777778888888888888765444444333332211 1
Q ss_pred -CCHHHHHHHHh-----------------------hCCCCC-h--hHHHHHH-------HHHHhCCCHhHHHHHHHHHHH
Q 010881 168 -GQISIARQMFD-----------------------KMPEKN-A--VSWSAMI-------NGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 168 -~~~~~A~~~~~-----------------------~~~~~~-~--~~~~~li-------~~~~~~g~~~~a~~~~~~m~~ 213 (498)
-..+++.++-. ....|. . ...+.+- ..+-......+....|+.-..
T Consensus 204 l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11122211111 111110 0 0011110 111122222233333333222
Q ss_pred c---CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 010881 214 C---GFRP----NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--- 283 (498)
Q Consensus 214 ~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 283 (498)
. .++| +..+|...+.--...|+.+.+.-.++...--- ..=...|-..+.-....|+.+-|..++....+
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 1 1222 44567777777788888888888887765321 12234444455555556888888888776553
Q ss_pred CChhHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH---HHHHhC
Q 010881 284 RDVFAYTSLISGL-ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK---KVVREM 359 (498)
Q Consensus 284 ~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~ 359 (498)
+.......+-..+ -..|+++.|..+++.+.+.- |+ -+..-..-+....+.|..+.+. +++...
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg-----------~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PG-----------LVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cc-----------hhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 3322222222233 34679999999999998752 44 2333333455667788888887 555444
Q ss_pred -CCCCCHHHHHHHH----H-HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881 360 -PIEPDNYVLGALL----N-ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 360 -~~~p~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (498)
...-+......+. + .+...++.+.|..++.++.+..|++...|..++......+.
T Consensus 430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 2222333333222 2 24556899999999999999999999899999888777664
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.57 E-value=0.17 Score=29.22 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
|..|...|...|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666667777777777666443
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.51 E-value=0.75 Score=38.80 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=23.8
Q ss_pred hHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.+|..|+.-+...|+.++|..+|+-.....+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 4677788888888888888888877765544
No 272
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.49 E-value=0.15 Score=45.87 Aligned_cols=87 Identities=10% Similarity=-0.099 Sum_probs=64.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (498)
.+-|.+.|.+++|+..|... .+.| |++++..-..+|.+...+..|+.-...++.++.....+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45677889999999998876 6667 788888888888888888888888888877776666666666666666677666
Q ss_pred HHHHHHhhh
Q 010881 418 VEKVRRGME 426 (498)
Q Consensus 418 a~~~~~~m~ 426 (498)
|.+-++...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 665554443
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.48 E-value=2.8 Score=32.41 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
.......++.+...|+-+.-.++++++ .-++++..+-.+..+|.+.|+..++.+++.++.+.+.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 345555677777888888888887776 4467788888888888888888888888888887664
No 274
>PRK09687 putative lyase; Provisional
Probab=93.37 E-value=6 Score=35.87 Aligned_cols=238 Identities=12% Similarity=0.009 Sum_probs=124.0
Q ss_pred HHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCc----HHHHHHHHHHHHhC
Q 010881 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL----FVGLICHAQVIRLG 118 (498)
Q Consensus 43 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~ 118 (498)
.+++.+..+|.......+.++...|.. .+...+..+... +|...=...+.+++..|+. ..+...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 344444566666666666666666543 333444444332 3444444455556666653 3455555555332
Q ss_pred CCCchhHHHHHHHHHHhCCCh-----hhHHHHhhc-cCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHH
Q 010881 119 WESYDFVLNGLLHLYATCNCM-----DPARKLFDM-SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI 192 (498)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 192 (498)
.++..+....+.++...+.. ..+...+.. ...++..+-...+.++.+.++.+....+..-+..++...-...+
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~ 180 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34555555555555444321 122333322 23445566666677777777654444444444455555555555
Q ss_pred HHHHhCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 010881 193 NGYVQVD-LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI 271 (498)
Q Consensus 193 ~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 271 (498)
.++.+.+ +...+...+..+.. .++...-...+.++.+.++. .+...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555542 23456666666653 45666666677777777764 3444443333332 1 234566777777775
Q ss_pred HHHHHHHhhCCC--CChhHHHHHHHHH
Q 010881 272 ETACSVFDSMPN--RDVFAYTSLISGL 296 (498)
Q Consensus 272 ~~A~~~~~~~~~--~~~~~~~~li~~~ 296 (498)
+|...+..+.+ +|...-...+.++
T Consensus 252 -~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 56666666553 4554444444444
No 275
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=93.33 E-value=0.087 Score=40.26 Aligned_cols=42 Identities=36% Similarity=0.560 Sum_probs=34.5
Q ss_pred ceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCccccccC
Q 010881 435 GCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEG 488 (498)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 488 (498)
|++|++. +.|++|+.+||+. .+..+++..||.|++..++...
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~ 43 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDV 43 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCc
Confidence 5788766 8999999999987 5567778889999999887643
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.13 E-value=4.1 Score=33.32 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
++.+-+.+.+++|+...+..+++.+.+.|++..-..++.--.-+|.......+-.+ .+.+..+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR----- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR----- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-----
Confidence 34445566777888888888888888888877777776644433333332222222 22334444444444432
Q ss_pred chhhhhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 321 ESMSEIYGIEPGVQ-HYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
.. .+..+++.+...|++-+|.++.++. ++ +......++.+..+.+|...--.+++-..+
T Consensus 88 ------------L~~~~~~iievLL~~g~vl~ALr~ar~~~~~--~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ------------LGTAYEEIIEVLLSKGQVLEALRYARQYHKV--DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ------------hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc--ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 5666788888999999999998875 22 112224456666666665544444444443
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.86 E-value=0.28 Score=27.65 Aligned_cols=31 Identities=23% Similarity=0.123 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
+|..+...|...|++++|...|+++++..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566667777778888888888887777764
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=13 Score=38.27 Aligned_cols=141 Identities=12% Similarity=0.050 Sum_probs=86.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
..-+.+.|++++|..-|-+-... +.| ..++.-|........--.+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34455678999988887776542 222 23566666666667777788888888865 445556789999999999
Q ss_pred hhHHHHhhccCCCChh-hHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHH
Q 010881 140 DPARKLFDMSVNRDVI-SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM 211 (498)
Q Consensus 140 ~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (498)
+.-.++.+........ -....+..+.+.+-.++|..+-.+... +...... .+-..+++++|++++..+
T Consensus 448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 8888888766521111 133444455555555555554443332 2222222 233457777777777665
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.74 E-value=0.0053 Score=49.43 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=49.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 010881 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI 306 (498)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 306 (498)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444555556666666666666655455677777888888877776777776663222 33344555666666666666
Q ss_pred HHHHHH
Q 010881 307 ELFMRM 312 (498)
Q Consensus 307 ~~~~~m 312 (498)
-++.++
T Consensus 91 ~Ly~~~ 96 (143)
T PF00637_consen 91 YLYSKL 96 (143)
T ss_dssp HHHHCC
T ss_pred HHHHHc
Confidence 666554
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.73 E-value=0.56 Score=41.85 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
++..++..+...|+++.+.+.+++.++.+|-+...|..++.+|.+.|+...|++.|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666666666666666666666654
No 281
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.70 E-value=9.7 Score=36.47 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=79.5
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQM 79 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 79 (498)
..+++++.+..+.-.|+....-+ .++... |+++.+.+.+.... .....+..++++..-+.|+++.|..+-+-|
T Consensus 308 as~~~~~~lr~~~~~p~~i~l~~--~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 308 ASQQLFAALRNQQQDPVLIQLRS--VIFSHL--GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHHHHHHHHHhCCCCchhhHHHH--HHHHHh--hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 45788888888776666654443 445666 99999998887654 345667788888888999999999998888
Q ss_pred HHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 010881 80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120 (498)
Q Consensus 80 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 120 (498)
....+. ++..........-..|-++++...++++....++
T Consensus 384 l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 384 LSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 876554 3333333333344557788888888888765544
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.69 E-value=0.41 Score=29.06 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
.+|..+...|...|++++|.++|++.++. .|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 35677888899999999999999999884 455
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=14 Score=37.83 Aligned_cols=147 Identities=7% Similarity=0.002 Sum_probs=75.8
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCC---CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 010881 59 MIRGFAEKNEPIKAFALYKQMLRSDFLP---NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT 135 (498)
Q Consensus 59 li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (498)
-|+.+.+.+.+++|++.-+.-.. ..| -.......+..+...|+++.|-...-.|... +..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 35566677888888877665433 333 2234566677777778888777766665432 33334444444444
Q ss_pred CCChhhHHHHhhccCC-CChhhHHHHHHHHHccCCHHHHHHHHhhCCC--------------------CChhHHHHHHHH
Q 010881 136 CNCMDPARKLFDMSVN-RDVISWTSLINGYAKSGQISIARQMFDKMPE--------------------KNAVSWSAMING 194 (498)
Q Consensus 136 ~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------------------~~~~~~~~li~~ 194 (498)
.++......++=.... .++..|..++..+.. .+...-.+...+.+. .+...-..|+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 4444333333222221 244455555555554 232222222222210 122233446667
Q ss_pred HHhCCCHhHHHHHHHHHH
Q 010881 195 YVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~ 212 (498)
|...+++.+|+..+-..+
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 777777777777665553
No 284
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.53 E-value=4.4 Score=32.06 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 010881 381 VDLGKETVESLVERSLDHE 399 (498)
Q Consensus 381 ~~~A~~~~~~~~~~~~~~~ 399 (498)
...|..-|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5678888888888888865
No 285
>PRK09687 putative lyase; Provisional
Probab=92.37 E-value=8.4 Score=34.95 Aligned_cols=226 Identities=11% Similarity=0.022 Sum_probs=119.4
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCH----hHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF----KEALEHFNYMQLCGFRPNHAGIVGA 226 (498)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~l 226 (498)
.+|.......+.++...|..+-...+..-+..+|...-...+.++...|+. .++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344444445555555555433333333333344555555556666666653 4566666665332 3454444444
Q ss_pred HHHHhccCChHH--HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChH
Q 010881 227 LTACAFLGALDQ--GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD-QSA 303 (498)
Q Consensus 227 l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~ 303 (498)
+.++...+.... -......+...-..++..+-...+.++.+.++.+....+..-+..+|...-..-+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 555444332110 01112222221123456666677777777776544444444444566655555555665543 244
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010881 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL 383 (498)
Q Consensus 304 ~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 383 (498)
.+...+..+... ++..+-...+.++.+.|+..-.-.+.+.+. .++. ....+.++...|+. +
T Consensus 192 ~~~~~L~~~L~D---------------~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 192 DIREAFVAMLQD---------------KNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-T 252 (280)
T ss_pred HHHHHHHHHhcC---------------CChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-h
Confidence 566666666542 245667777888888887543333344443 2332 34566777777774 6
Q ss_pred HHHHHHHHHhcCCC
Q 010881 384 GKETVESLVERSLD 397 (498)
Q Consensus 384 A~~~~~~~~~~~~~ 397 (498)
|...+..+.+..|+
T Consensus 253 a~p~L~~l~~~~~d 266 (280)
T PRK09687 253 LLPVLDTLLYKFDD 266 (280)
T ss_pred HHHHHHHHHhhCCC
Confidence 88888888776664
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=7.3 Score=33.80 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----C-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM----P-I-EPDNYVLGALLNACRVHGDVDLGKETVE 389 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (498)
..|...|-.+.-..|+..|...++.- + . .-+..+...|+.+| ..|+.+.+..++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 44666677777788899999998874 1 1 22577888888887 5677777766653
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.02 E-value=0.41 Score=27.55 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888754
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.02 E-value=12 Score=36.13 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=78.2
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881 59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138 (498)
Q Consensus 59 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (498)
+|.-.-+..+++.-++.-++..+ +.||-.+.-.++ +--......++++++++.++.|-.. .-..... ...|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~---~~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEAS--LGKSQFL---QHHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHh--hchhhhh---hcccc
Confidence 34334456677777777777766 446543322222 2223455788888888887765110 0000000 01111
Q ss_pred hhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE--K---NAVSWSAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
.- .....+-..+-..+-..+..++-+.|+.++|++.|++|.+ | +......|+.++...+.+.++..++.+-.+
T Consensus 246 ~~--e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 FW--EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hh--hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 00 0011111111122233456666778888888888888863 2 233566788888888888888888887644
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.99 E-value=1 Score=36.26 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=56.4
Q ss_pred HHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 334 QHYGCLVDLL---GRAGMLEAAKKVVREM-PIEPDNYVLGAL-LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 334 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
.+.+.|+..+ .+.++.+++..++..+ -++|.......+ ...+...|++.+|..+++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4555555544 4678888999888888 455644433222 2346788999999999999888878777656666666
Q ss_pred hHhcCCcc
Q 010881 409 YASTEQWN 416 (498)
Q Consensus 409 ~~~~g~~~ 416 (498)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 66666643
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=2.3 Score=34.62 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHHhhCCCCChhHHHHHH-----HHHHhCCCHhHHHHHHHHHHHc
Q 010881 166 KSGQISIARQMFDKMPEKNAVSWSAMI-----NGYVQVDLFKEALEHFNYMQLC 214 (498)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~ 214 (498)
+.+..++|+.-|..+.+.+.-.|-.|. ......|+...|...|++.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 334455555555555544333333322 2334455555555555555443
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.92 E-value=0.94 Score=35.81 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 334 QHYGCLVDLL---GRAGMLEAAKKVVREM-PIEPD---NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 334 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
...+.|++.. ...++.+++..+++.+ -++|+ ..++... .+...|++++|.++++.+.+..+..+..-..++
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444444433 3467777777777766 33343 3333222 346677777777777777766666554444555
Q ss_pred HHhHhcCCc
Q 010881 407 NIYASTEQW 415 (498)
Q Consensus 407 ~~~~~~g~~ 415 (498)
.++.-.|+.
T Consensus 86 ~CL~al~Dp 94 (153)
T TIGR02561 86 LCLNAKGDA 94 (153)
T ss_pred HHHHhcCCh
Confidence 555555553
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.84 E-value=0.45 Score=28.26 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666666777777777777766654
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.64 E-value=12 Score=35.21 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010881 347 GMLEAAKKVVREM-PIEP-DNYVLGALLN 373 (498)
Q Consensus 347 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 373 (498)
+..+++...|.+. .+.| ....|..+..
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 6677777777776 4445 3444444443
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.47 E-value=3.5 Score=33.61 Aligned_cols=130 Identities=9% Similarity=-0.002 Sum_probs=80.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH-
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY-TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL- 129 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l- 129 (498)
+-..|...+. +++.+..++|+.-|.++.+.|...-+. .-..........|+-..|...|.++-.....|-..--..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445555554 356778888888888888765431111 0111222356778888888888888776555544311111
Q ss_pred --HHHHHhCCChhhHHHHhhccCCC-C---hhhHHHHHHHHHccCCHHHHHHHHhhCCC
Q 010881 130 --LHLYATCNCMDPARKLFDMSVNR-D---VISWTSLINGYAKSGQISIARQMFDKMPE 182 (498)
Q Consensus 130 --~~~~~~~g~~~~a~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 182 (498)
.-.+.-.|.++....-.+.+..+ + ...-..|.-+-.+.|++..|...|..+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12345678888887777665432 2 23345666667788999999988887764
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.23 E-value=6.9 Score=31.65 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=69.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 010881 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNA 374 (498)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 374 (498)
-...++.+++..++..+.- +.|. ....-..-...+...|++.+|..+|+++ .-.|....-..|+..
T Consensus 20 al~~~~~~D~e~lL~ALrv--LRP~-----------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV--LRPE-----------FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHccCChHHHHHHHHHHHH--hCCC-----------chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3556789999999999876 3454 2333333455677899999999999999 434555555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
|....+-..=...-+++++.++++. -..++..+....+...|...
T Consensus 87 CL~~~~D~~Wr~~A~evle~~~d~~--a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 87 CLYALGDPSWRRYADEVLESGADPD--ARALVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHcCChHHHHHHHHHHhcCCChH--HHHHHHHHHHhccccchhhh
Confidence 6555444444455566666665432 33455555555554544443
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.21 E-value=15 Score=35.59 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
|....-+++..+..+..+.-...+..+|+.-| -+...|..++++|... ..++-..+|+++.+..+ .|+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44555566777777777777777777777643 4556666677766666 55556666666666542 23333333444
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 010881 264 MYAKCGCIETACSVFDSM 281 (498)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~ 281 (498)
.|-+ ++.+.+...|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 3333 5555555555543
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.18 E-value=11 Score=34.09 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=13.5
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 010881 295 GLANHDQSASAIELFMRMQ 313 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~ 313 (498)
.+.+.++++.|..+|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4566788888888887543
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=12 Score=33.67 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=39.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010881 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN 283 (498)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 283 (498)
....|+..+|...|+...... +-+......+..+|...|+.+.|..++..++.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 455677777777777776664 44556667788888888888888888888775
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.88 E-value=0.56 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 370 ALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
.+..++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455566667777777777777766665
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.87 E-value=0.91 Score=41.02 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=73.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHH
Q 010881 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PDNYVLGAL 371 (498)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l 371 (498)
.-|.++|.+++|+..|...... .|- +.+++..-..+|.+...+..|+.-.... .+. .-...|..-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~-----------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPH-----------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCC-----------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 4688999999999999887653 221 6888999999999999999888776655 211 234455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 010881 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 404 (498)
+.+-...|+..+|.+-++.++++.|.+...--.
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~ 204 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPKNIELKKS 204 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHH
Confidence 566666789999999999999999997654333
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.28 E-value=2.2 Score=38.12 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 331 (498)
..++..++..+..+|+++.+...++.+... +...|..++.+|.+.|+...|+..|+++... +....|+.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~-------~~edlgi~P 225 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT-------LAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH-------hhhhcCCCc
Confidence 456778888999999999999999988753 6678999999999999999999999998774 233447777
Q ss_pred ChHHHHHHHHH
Q 010881 332 GVQHYGCLVDL 342 (498)
Q Consensus 332 ~~~~~~~l~~~ 342 (498)
...+.......
T Consensus 226 ~~~~~~~y~~~ 236 (280)
T COG3629 226 APELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHH
Confidence 77777666655
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=1.8 Score=38.72 Aligned_cols=101 Identities=15% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-CCCc-----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc
Q 010881 15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YRTT-----FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN 88 (498)
Q Consensus 15 g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 88 (498)
|.+....+...++..-... .+++.++..+-++. +|+. .+-.++++.+. .-++++++.++..=++.|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~--~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSR--EEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccc--cchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 3444445555555554444 67777777766554 2221 12223333333 23667888877777777888888
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 010881 89 YTFSFILRACADTSCLFVGLICHAQVIRLG 118 (498)
Q Consensus 89 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 118 (498)
+++..+|+.+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888887777766543
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.92 E-value=6 Score=33.01 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA--GIVGALTACAFLGALDQGRWIHAYVDR 248 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (498)
..+..+...|++.|+.++|++.|.++.+....|... .+..+|..+...+++..+......+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666777777777777777766654333322 344555555666666666666555443
No 304
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.63 E-value=14 Score=32.51 Aligned_cols=59 Identities=14% Similarity=-0.084 Sum_probs=34.3
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCGF--RPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (498)
-+..-.+.|++++|.+.|+.+..... +-...+...++-++.+.++++.|....++..+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33445567777777777777765421 112334445555556666666666666555443
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=12 Score=32.35 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881 339 LVDLLGRA-GMLEAAKKVVREM-----PIEPDNYVLGALL---NACRVHGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 339 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
+...|-.- .++++|+..|++. +-+.+...--+++ ..-...+++.+|+++|+++.....+++..
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 34444332 5667777777665 2222222222333 33466789999999999998877665533
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.48 E-value=12 Score=34.23 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHH
Q 010881 202 KEALEHFNYMQLCGFRPNHAGIVG 225 (498)
Q Consensus 202 ~~a~~~~~~m~~~g~~p~~~~~~~ 225 (498)
++.+.+++.|.+.|+.-+..+|.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHH
Confidence 344556666666666666555544
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.32 E-value=3.1 Score=34.73 Aligned_cols=64 Identities=8% Similarity=-0.060 Sum_probs=48.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN--NYTFSFILRACADTSCLFVGLICHAQVIRL 117 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 117 (498)
..+..+...|++.|+.+.|++.|.++++....|. ...+..+|+.....+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677888889999999999999999887654443 334667778888888888888887776554
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.00 E-value=4.6 Score=33.79 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=72.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL 372 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 372 (498)
-+...|++++|..-|.+.++. .|.- .-..-...|..-..++.+.+.++.|+.-..+. .+.| ....+..-.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPST------STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--Cccc------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 466788888888888888774 2220 00112445666677888999999998887776 5556 344444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
.+|.+..+++.|++-|+++++.+|....+-...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 688899999999999999999999865444333
No 309
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.76 E-value=5.1 Score=31.15 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCCc-hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 362 EPDNYVLGALLNACRVHG---DVDLGKETVESLVE-RSLDHE-GVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 362 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.++..+-..+..++.+.. +..+.+.+++.+.+ -.|... ...+.|+-++.+.++++.++++.+...+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 455556666666666655 45667778888876 334432 3344677788889999999998877765
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.60 E-value=6.1 Score=36.11 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=76.4
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCC----ChhHHHHHhhhcCCC-------CcchHHHHHHHHHhCCCc-
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG----DLSHGYRLFVCLQYR-------TTFIWNTMIRGFAEKNEP- 69 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g----~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~- 69 (498)
++...+++.+.+.|+..+..++-+-..+....... ....|..+++.|.+. +-.++..++.. ...++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 45678899999999998887776644444441101 356788888888742 22344455433 33333
Q ss_pred ---hHHHHHHHHhHHCCCCCCcc--hHHHHHHHHHccCC--cHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881 70 ---IKAFALYKQMLRSDFLPNNY--TFSFILRACADTSC--LFVGLICHAQVIRLGWESYDFVLNGL 129 (498)
Q Consensus 70 ---~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (498)
+.+..+|+.+.+.|+..+.. ..+.++..+..... ..++..+++.+.+.|.++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 45677788887777766443 33444444333322 34677788888888877666665443
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.25 E-value=7.2 Score=38.47 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=84.5
Q ss_pred ccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881 166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245 (498)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 245 (498)
-.|+++.|..++..+++ ...+.+...+.+.|-.++|+.+- ..|+. -| ....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHh
Confidence 34667777666666553 23344555666666666665542 12221 11 222355666666666543
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325 (498)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 325 (498)
.. +..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g--------- 722 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG--------- 722 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc---------
Confidence 22 455677777777777777777777766543 4455555666666554444444444433
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 010881 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360 (498)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (498)
..|....+|...|+++++.+++.+-+
T Consensus 723 ---------~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 723 ---------KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ---------ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 12233445566777777777776653
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.10 E-value=0.79 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=16.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHH
Q 010881 252 ELDIILGTAIIDMYAKCGCIETAC 275 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~ 275 (498)
|-+..+|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556667777777777777777664
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.06 E-value=0.75 Score=25.84 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 55 IWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 55 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666667777777777777777665
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=3.3 Score=37.23 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=61.3
Q ss_pred HHHHHHHHccCCHHHHHHHHhhCCC-------CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010881 158 TSLINGYAKSGQISIARQMFDKMPE-------KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC 230 (498)
Q Consensus 158 ~~li~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 230 (498)
..++..-....+++.++..+-++.. ++...+ ..++. +-.-++++++.++..=.+-|+-||.++++.+|..+
T Consensus 68 d~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~f 145 (418)
T KOG4570|consen 68 DRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSF 145 (418)
T ss_pred hhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHH
Confidence 3333333344556666666555542 121111 22222 23446789999988888999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHhC
Q 010881 231 AFLGALDQGRWIHAYVDRNG 250 (498)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~ 250 (498)
.+.+++.+|.++.-.|....
T Consensus 146 lk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 146 LKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HhcccHHHHHHHHHHHHHHH
Confidence 99999999988887776554
No 315
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.84 E-value=16 Score=31.16 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVRE 358 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (498)
.+||..|..-+...|+.++|..+|+-
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 35566666666666666666666654
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.79 E-value=5 Score=31.90 Aligned_cols=54 Identities=6% Similarity=0.071 Sum_probs=40.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
...++.+++..+++.+.-+.|+.+..-..-+..+...|+|++|.++|+...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 446777777777777777777777777777777777788888888777776654
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.77 E-value=6.1 Score=37.73 Aligned_cols=107 Identities=10% Similarity=0.063 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
........+...|+++.+.+.+... -+.....+..++++.....|+++.|......|+.....++......+......
T Consensus 325 ~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l 404 (831)
T PRK15180 325 LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADAL 404 (831)
T ss_pred hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHH
Confidence 3333445567789999999999877 23346678889999999999999999999999988887777666666666677
Q ss_pred CCcchHHHHHHhhhhCCccccCceeEEEECC
Q 010881 413 EQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443 (498)
Q Consensus 413 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 443 (498)
|-+|++.-.|++......+...| |+.+..
T Consensus 405 ~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~ 433 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLNPETQSG--WVNFLS 433 (831)
T ss_pred hHHHHHHHHHHHHhccCChhccc--ceeeec
Confidence 88999999999987665544444 554443
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.05 E-value=0.79 Score=25.63 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=24.6
Q ss_pred hHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
..+..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988754
No 319
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.03 E-value=40 Score=34.81 Aligned_cols=75 Identities=9% Similarity=-0.071 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhCCCH
Q 010881 126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP---EKNAVSWSAMINGYVQVDLF 201 (498)
Q Consensus 126 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 201 (498)
-...+..+.+.++++....++..- ..+...-.....+....|+.++|......+= ...+...+.++..+.+.|.+
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCC
Confidence 344445555666777666633222 2344444555566666676655544444331 12344455555555544443
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.00 E-value=40 Score=34.71 Aligned_cols=213 Identities=14% Similarity=0.080 Sum_probs=91.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC-------cHHHHHHHHHHHHhCCCCchhH
Q 010881 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC-------LFVGLICHAQVIRLGWESYDFV 125 (498)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~ 125 (498)
...| .+|-.|.|.|++++|.++..+... ........|...+..+....+ -++...-+++..+.....|++=
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 3445 456678899999999999866554 355566778888888876532 2344555555555443223321
Q ss_pred HHHHHHHHHhCCChh----h----HHHHh--hc-cC---C-C-----ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCCh
Q 010881 126 LNGLLHLYATCNCMD----P----ARKLF--DM-SV---N-R-----DVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185 (498)
Q Consensus 126 ~~~l~~~~~~~g~~~----~----a~~~~--~~-~~---~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 185 (498)
+ ++.....++.-.+ + .++.+ +- +. . . +..++..|=....+- ....|.. ..++
T Consensus 190 ~-AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~-----Ge~~F~~--~~~p 261 (613)
T PF04097_consen 190 R-AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKY-----GESHFNA--GSNP 261 (613)
T ss_dssp H-HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT------
T ss_pred H-HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHh-----chhhccc--chhH
Confidence 1 1111112222111 1 11110 00 00 0 0 011111111111100 1112222 1122
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIILGTAIIDM 264 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 264 (498)
..| ...+.-.|+++.|++++-. ..+...+.+++.+.+..+.-.+-.+... ..+.... -.|...-+..||..
T Consensus 262 ~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 262 LLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp --H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred HHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 233 3445668999999998877 3345667777777776654333222211 2221111 01112456778888
Q ss_pred HHh---cCCHHHHHHHHhhCCC
Q 010881 265 YAK---CGCIETACSVFDSMPN 283 (498)
Q Consensus 265 ~~~---~g~~~~A~~~~~~~~~ 283 (498)
|++ ..+...|.+.|--+..
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 876 4578888888776654
No 321
>PRK10941 hypothetical protein; Provisional
Probab=87.00 E-value=5.7 Score=35.61 Aligned_cols=62 Identities=15% Similarity=0.010 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
..+.+-.+|.+.++++.|+++.+.++...|+++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44556677888999999999999999999998877777888899999999988888777654
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.63 E-value=0.91 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=14.5
Q ss_pred HHHHHHHHhHhcCCcchHHHHHH
Q 010881 401 VHVLLSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~ 423 (498)
+...++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556666666677666666654
No 323
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.99 E-value=2.3 Score=36.62 Aligned_cols=84 Identities=10% Similarity=-0.031 Sum_probs=62.5
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881 344 GRAGMLEAAKKVVREM-PIEPDN-YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
....+++.|...|.+. -+.|+. ..|..=+..+.+..+++.+.+-..+++++.|+.....+.++..+.....+++|+..
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3445666677666665 566765 44555666777788888888888888888888888888888888888888888888
Q ss_pred HHhhhh
Q 010881 422 RRGMED 427 (498)
Q Consensus 422 ~~~m~~ 427 (498)
+.+..+
T Consensus 101 Lqra~s 106 (284)
T KOG4642|consen 101 LQRAYS 106 (284)
T ss_pred HHHHHH
Confidence 887743
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.93 E-value=4.4 Score=25.78 Aligned_cols=50 Identities=6% Similarity=-0.101 Sum_probs=35.8
Q ss_pred HHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcC
Q 010881 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLC 476 (498)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 476 (498)
....++.++.+.|++++|.+..+.+.+. .|+.++.......+.+++.+.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence 3567788999999999999999988753 3444555555555677887776
No 325
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.89 E-value=35 Score=34.62 Aligned_cols=50 Identities=6% Similarity=-0.003 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
+...|..+++++.+.++.....-......+.. ++++.+...+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 56666777776666663221111122222233 666666655555555443
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.76 E-value=37 Score=33.15 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=77.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 131 (498)
|-...-+++..+..+....-...+..+|...| -+...|..++.+|... ..+.-..+++++++..+. |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445556666666666666666666666633 4555666666666665 445556666666665543 3333333444
Q ss_pred HHHhCCChhhHHHHhhccCCC------C---hhhHHHHHHHHHccCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHh
Q 010881 132 LYATCNCMDPARKLFDMSVNR------D---VISWTSLINGYAKSGQISIARQMFDKMPEK-----NAVSWSAMINGYVQ 197 (498)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~~------~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 197 (498)
.|-+ ++...+..+|.+...+ + -..|..+...- ..+.+....+..++... ..+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 5555555555443211 1 11333333211 13334444444333321 23334444445555
Q ss_pred CCCHhHHHHHHHHHHHc
Q 010881 198 VDLFKEALEHFNYMQLC 214 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~~ 214 (498)
..++++|++++...++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 56666666666655554
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.75 E-value=1.6 Score=23.36 Aligned_cols=29 Identities=34% Similarity=0.165 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
|..+...+...++++.|...++..++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555666666666666666665544
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.66 E-value=4.3 Score=25.84 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
-.+.-++.+.|+++.|.+..+.+++.+|++..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 345668899999999999999999999998753
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.19 E-value=53 Score=34.47 Aligned_cols=190 Identities=13% Similarity=0.020 Sum_probs=98.3
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChh-------HHHHHHH-HHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHH
Q 010881 231 AFLGALDQGRWIHAYVDRNGIELDII-------LGTAIID-MYAKCGCIETACSVFDSMPN--------RDVFAYTSLIS 294 (498)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 294 (498)
....++++|..+..++...--.|+.. .+++|-. .....|+++.|.++-+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45567777777777765543222221 2333221 22346788887776665432 35567777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH--HHHHhhcCCHHHHH--HHHHhC-----CCCC--
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL--VDLLGRAGMLEAAK--KVVREM-----PIEP-- 363 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~--~~~~~~-----~~~p-- 363 (498)
+..-.|++++|..+..+..+.. +.+++.+ ...|..+ ...+...|....+. ..|... +-.|
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a--------~~~~~~~-l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMA--------RQHDVYH-LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHH--------HHcccHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 8888899999888877665531 1111111 1122222 23345566333222 222222 1112
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchH---HHHHHHHhHhcCCcchHHHHHHhhhhCCccc
Q 010881 364 --DNYVLGALLNACRVHGDVDLGKETVESLVE----RSLDHEGV---HVLLSNIYASTEQWNGVEKVRRGMEDNEVRK 432 (498)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 432 (498)
-..++..++.++.+ .+.+..-.....+ ..|.+-.. +..|+......|+.++|...+.++.......
T Consensus 577 ~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 577 EFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 22334444444443 4444443333333 22332222 2367788888899999988888887654443
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.80 E-value=13 Score=27.20 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 223 (498)
..+...|++++|..+.+...-||...|-.|. -.+.|..+++..-+.+|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456678888888888777777777776654 346676676666666676665 4444444
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.76 E-value=11 Score=37.13 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHH
Q 010881 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA 204 (498)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 204 (498)
..+.++..+.+.|..++|+++-- |+.. -.....+.|+++.|.++..+.. +..-|..|.++..+.+++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhH
Confidence 34455555556666655554421 1111 1122334567777766655443 556677777777777877777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 205 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
.+.|..... |..|+-.+...|+-+....+-....+.| .. |...-+|...|+++++.+++..-
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 777766543 3445555556666655555555555554 22 23334555667777777766543
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.44 E-value=11 Score=27.45 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010881 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247 (498)
Q Consensus 203 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (498)
++.+-++.+....+.|+.....+.+.+|.+.+++..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444445555555555555555555555555555555444
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.22 E-value=47 Score=33.06 Aligned_cols=339 Identities=11% Similarity=0.021 Sum_probs=178.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch-HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT-FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL 130 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 130 (498)
+-..|..+|.---...+.+.+..++..++. -.|..+. |.....-=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 445676666544444445666666776664 2355443 333444446778899999999998875 456777776666
Q ss_pred HHHH-hCCChhhHHHHhhccCC------CChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHh---C--
Q 010881 131 HLYA-TCNCMDPARKLFDMSVN------RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ---V-- 198 (498)
Q Consensus 131 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~-- 198 (498)
..+. ..|+.+...+.|+.... .....|...|.--..++++.....+|+...+-....|+..-.-|.+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 5544 46777778888876543 2455677777777788888888888888876444444433332221 1
Q ss_pred ----CCHhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881 199 ----DLFKEALEHFNYMQLC----GFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269 (498)
Q Consensus 199 ----g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (498)
...+++.++-...... ...+.......-+.-... .+..+.+.....+.. ..--.+|-..-
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~ 269 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSE 269 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhH
Confidence 1223333332222210 000011111111110000 011111111111100 00111122222
Q ss_pred CHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHH
Q 010881 270 CIETACSVFDSMPN-----------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC 338 (498)
Q Consensus 270 ~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~ 338 (498)
........|+.-.+ .+..+|..-+.--...|+.+.+.-+|++..-. ...=...|-.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-------------cA~Y~efWik 336 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-------------CALYDEFWIK 336 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-------------HhhhHHHHHH
Confidence 23333333433322 13456777777777778888877777776431 0011344555
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881 339 LVDLLGRAGMLEAAKKVVREM-----PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (498)
.+.-....|+.+-|..++... +-.|....+.+.+ +-..|+++.|..+++.+.+.-|....+-..-+....+.|
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 555555557777777776655 2233333333222 344578888888888887766665555555566666777
Q ss_pred CcchHH
Q 010881 414 QWNGVE 419 (498)
Q Consensus 414 ~~~~a~ 419 (498)
..+.+.
T Consensus 415 ~~~~~~ 420 (577)
T KOG1258|consen 415 NLEDAN 420 (577)
T ss_pred chhhhh
Confidence 777666
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.20 E-value=9.9 Score=30.25 Aligned_cols=76 Identities=9% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCCCChhHHHHHhhhcC---------CCCcchHHHHHHHHHhCCC-chHHHHHHHHhHHCCCCCCcchHH
Q 010881 23 VGKIIGFCSASDIGDLSHGYRLFVCLQ---------YRTTFIWNTMIRGFAEKNE-PIKAFALYKQMLRSDFLPNNYTFS 92 (498)
Q Consensus 23 ~~~l~~~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~ 92 (498)
.|.++.-.+.. +++.....+++.+. ..+..+|++++.+.++... --.+..+|..|.+.+.+++..-|.
T Consensus 42 iN~iL~hl~~~--~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASY--QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHc--cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44455444444 55555555555443 1233445555555543333 223444555555444455555555
Q ss_pred HHHHHHHc
Q 010881 93 FILRACAD 100 (498)
Q Consensus 93 ~ll~~~~~ 100 (498)
.++.++.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 55554443
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.11 E-value=97 Score=36.62 Aligned_cols=349 Identities=9% Similarity=-0.033 Sum_probs=173.2
Q ss_pred HHHHhhcCCCCChhHHHHHhhhc----CCCC--cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHH
Q 010881 26 IIGFCSASDIGDLSHGYRLFVCL----QYRT--TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA 99 (498)
Q Consensus 26 l~~~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 99 (498)
|..+--++ +.+..|...++.- .+.+ ...|-.+...|+.-++++....+...-.. +... ..-|-...
T Consensus 1389 La~aSfrc--~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRC--KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHE 1460 (2382)
T ss_pred HHHHHHhh--HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHH
Confidence 34445556 7788888888872 2221 12333444488888888887766653111 2222 23344456
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC---ChhhHHH-HHHHHHccCCHHHHHH
Q 010881 100 DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR---DVISWTS-LINGYAKSGQISIARQ 175 (498)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~A~~ 175 (498)
..|++..|...|+.+.+.++ +...+++.++......|.++.+....+..... ....++. =+.+-.+.++++....
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 67888888888888887653 23556666666666677777777766655432 2222322 2334466777777666
Q ss_pred HHhhCCCCChhHHHHH--HHHHHhCC--CHhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHhccCChHHHHHH
Q 010881 176 MFDKMPEKNAVSWSAM--INGYVQVD--LFKEALEHFNYMQLCGFRP---------NHAGIVGALTACAFLGALDQGRWI 242 (498)
Q Consensus 176 ~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~m~~~g~~p---------~~~~~~~ll~~~~~~~~~~~a~~~ 242 (498)
... ..+..+|... +....+.. +.-.-.+..+-+++.-+.| -...|..++....-.. -...
T Consensus 1540 ~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENS 1612 (2382)
T ss_pred hhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHH
Confidence 655 3344444433 22222222 2111112333332221111 0011222222111000 0000
Q ss_pred HHHHHHhCCCCChhH------H---HHHHHHHHhcCCHHHHHH-H-Hhh-CC----CCChhHHHHHHHHHHhcCChHHHH
Q 010881 243 HAYVDRNGIELDIIL------G---TAIIDMYAKCGCIETACS-V-FDS-MP----NRDVFAYTSLISGLANHDQSASAI 306 (498)
Q Consensus 243 ~~~~~~~~~~~~~~~------~---~~l~~~~~~~g~~~~A~~-~-~~~-~~----~~~~~~~~~li~~~~~~~~~~~a~ 306 (498)
.+.. .++.++..+ | ....+.+.+..+.--|.+ . +.. |. +.-..+|-...+.....|+++.|.
T Consensus 1613 ~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 0000 111221111 1 111122222111111111 1 111 11 123457777777777889999998
Q ss_pred HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----------CCCCCHHHHHHHHHH--
Q 010881 307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----------PIEPDNYVLGALLNA-- 374 (498)
Q Consensus 307 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~~~~~~~l~~~-- 374 (498)
..+-...+.+ . +..+.-.+..+...|+-..|+.++++. +.++.+..-+..+..
T Consensus 1691 nall~A~e~r-~--------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~ 1755 (2382)
T KOG0890|consen 1691 NALLNAKESR-L--------------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKA 1755 (2382)
T ss_pred HHHHhhhhcc-c--------------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhH
Confidence 8776666643 1 356666778888899999999888875 111222222222221
Q ss_pred -------HHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881 375 -------CRVHG--DVDLGKETVESLVERSLDHEGVHVLLSN 407 (498)
Q Consensus 375 -------~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 407 (498)
....+ ..+..++.|..+.+..|.....++.++.
T Consensus 1756 ~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1756 KLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence 12223 3456677888888888865555555553
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.10 E-value=4.3 Score=36.12 Aligned_cols=61 Identities=13% Similarity=-0.024 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
+++...+.|..+|.+.+|.++.++++..+|-+...+..|...|...|+--+|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455567899999999999999999999999999999999999999998888888877753
No 337
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.96 E-value=5.5 Score=38.29 Aligned_cols=85 Identities=7% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC-cchHHHHHHhh
Q 010881 349 LEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ-WNGVEKVRRGM 425 (498)
Q Consensus 349 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m 425 (498)
......+|+.. .+.-|...|...+.-|.+.+.+.+...+|.+|+...|+++..|...+.-...-+. ++.|..+|
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf--- 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF--- 163 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH---
Q ss_pred hhCCccccCcee
Q 010881 426 EDNEVRKVPGCS 437 (498)
Q Consensus 426 ~~~~~~~~~~~~ 437 (498)
-+|++..|.+.
T Consensus 164 -lrgLR~npdsp 174 (568)
T KOG2396|consen 164 -LRGLRFNPDSP 174 (568)
T ss_pred -HHHhhcCCCCh
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.74 E-value=8.7 Score=28.22 Aligned_cols=56 Identities=16% Similarity=0.346 Sum_probs=39.1
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 351 AAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 351 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
+..+-++.+ .+.|++....+.+.+|.+.+++..|.++++-+...-.+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 444555554 77899999999999999999999999999998876544443565553
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.49 E-value=2.9 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888765
No 340
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=83.41 E-value=7.9 Score=27.49 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=43.2
Q ss_pred HhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHH
Q 010881 4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73 (498)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 73 (498)
+.++++.....|+- +....+.+-.+-.+. |+.+.|++++..++ +.+..|...++++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~--g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENH--GNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhcccc--CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 45677777777754 333444433333355 77888888888888 77778888888877777655443
No 341
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.28 E-value=1.9 Score=41.10 Aligned_cols=87 Identities=7% Similarity=-0.068 Sum_probs=73.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEPDNYVLGAL-LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (498)
+.-+...++++.|..++.++ .+.||...|... ..++.+.+++..|+.=+.++++.+|.....|..-+.++.+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 45566778899999999888 778865555443 3788999999999999999999999999899999999999999999
Q ss_pred HHHHHHhhh
Q 010881 418 VEKVRRGME 426 (498)
Q Consensus 418 a~~~~~~m~ 426 (498)
|...|+.-.
T Consensus 91 A~~~l~~~~ 99 (476)
T KOG0376|consen 91 ALLDLEKVK 99 (476)
T ss_pred HHHHHHHhh
Confidence 999986654
No 342
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.26 E-value=15 Score=26.71 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 348 MLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 348 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
|.=++.+-++.+ .+.|++....+.+++|.+.+++..|.++++-+...-..+...|..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 444556666665 7889999999999999999999999999998875443333345544
No 343
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.22 E-value=59 Score=33.47 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCc-------hHHHHHHHHhHH
Q 010881 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEP-------IKAFALYKQMLR 81 (498)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-------~~A~~~~~~m~~ 81 (498)
.+| ++|=.|.++ |++++|.++..... ++....+-..+..|....+- ++...-|++...
T Consensus 113 p~W-a~Iyy~LR~--G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r 180 (613)
T PF04097_consen 113 PIW-ALIYYCLRC--GDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIR 180 (613)
T ss_dssp EHH-HHHHHHHTT--T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTT
T ss_pred ccH-HHHHHHHhc--CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 344 345667888 99999999993332 34456677778887765322 344455555544
No 344
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.65 E-value=37 Score=30.76 Aligned_cols=99 Identities=7% Similarity=-0.075 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhccCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHH
Q 010881 221 AGIVGALTACAFLGALD---QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLIS 294 (498)
Q Consensus 221 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 294 (498)
.++..++.++...+..+ .|..+++.+.... +-.+.++-.-++.+.+.++.+.+.+++.+|... ....+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 34556666666666544 4455555554332 223445545566666678888888888887752 2344555554
Q ss_pred HHHh--cCChHHHHHHHHHHHHcCCCCC
Q 010881 295 GLAN--HDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 295 ~~~~--~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
.+.. ......|...+..+....+.|.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4421 2334556666666665544443
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.61 E-value=1.4 Score=24.27 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=24.6
Q ss_pred HHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 401 VHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998764
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.37 E-value=12 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN 249 (498)
Q Consensus 203 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (498)
+..+-+..+....+.|+.....+.+.+|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444555566666666666666666666666665555443
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.05 E-value=2.2 Score=23.78 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=25.0
Q ss_pred hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 400 GVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.++..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688899999999999999999988765
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.93 E-value=66 Score=33.14 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=87.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhH-HCCCCCC--cchHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCCCchh---
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQML-RSDFLPN--NYTFSFILRACA-DTSCLFVGLICHAQVIRLGWESYDF--- 124 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~-~~~~~p~--~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~--- 124 (498)
++..|..||.. |+..++-+. +..+.|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44556666543 345555554 2233332 223333444433 4556666666666554432221111
Q ss_pred --HHHHHHHHHHhCCChhhHHHHhhccCCC----Chhh----HHHH-HHHHHccCCHHHHHHHHhhCCC-----CC--hh
Q 010881 125 --VLNGLLHLYATCNCMDPARKLFDMSVNR----DVIS----WTSL-INGYAKSGQISIARQMFDKMPE-----KN--AV 186 (498)
Q Consensus 125 --~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~----~~~l-i~~~~~~~~~~~A~~~~~~~~~-----~~--~~ 186 (498)
....++..+.+.+... |...+++.++. .... +..+ +..+...++...|.+.++.+.. .+ ..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1223445555555444 66666553311 1111 1222 1122223677777777766542 12 22
Q ss_pred HHHHHHHHH--HhCCCHhHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHh--ccCChHHHHHHHHHHH
Q 010881 187 SWSAMINGY--VQVDLFKEALEHFNYMQLCGF---------RPNHAGIVGALTACA--FLGALDQGRWIHAYVD 247 (498)
Q Consensus 187 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 247 (498)
.+-.++.+. .+.+..+++.+..+.+..... .|...++..++..++ ..|+++.+...++.+.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333332 344556667777766633211 234556666666654 4566667766665554
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.92 E-value=5.1 Score=33.00 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881 381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 381 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (498)
+++|+.-|++++.++|+...++..++.+|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5566677777778999988899999988877654
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.86 E-value=29 Score=32.84 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC----------CC-----C------------C-CHHHHHHH---HHHHHhcCC
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM----------PI-----E------------P-DNYVLGAL---LNACRVHGD 380 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~-----~------------p-~~~~~~~l---~~~~~~~g~ 380 (498)
-+.++..+...+...|+.+.|.+++++. .+ . + |...|.++ +..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4677778888899999999888887765 22 1 1 33344443 457889999
Q ss_pred HHHHHHHHHHHHhcCCC-CchHHHHHHHHhH-hcCCcchHHHHHHhhhh
Q 010881 381 VDLGKETVESLVERSLD-HEGVHVLLSNIYA-STEQWNGVEKVRRGMED 427 (498)
Q Consensus 381 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 427 (498)
+..|.++.+-+..++|. |+......+..|+ +.++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999998 7766556666554 66888878888776654
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.36 E-value=15 Score=31.08 Aligned_cols=73 Identities=15% Similarity=0.023 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 010881 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETAC 275 (498)
Q Consensus 202 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (498)
+.|.+.|-++...+.- +....-..+..|....+.+++.+++..+.+. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5566666666655433 3334444444444566667777666665543 22566777777877777777777664
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.03 E-value=19 Score=29.83 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=45.6
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881 351 AAKKVVREM-PIEPD-NYVLGALLNACRVHG-----------DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 351 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (498)
+|..-|++. .+.|+ ..++..+..+|...+ .+++|.+.|+++.+.+|.+. .|..-+... +.
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~k 125 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AK 125 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HT
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------Hh
Confidence 333334443 66785 577777777775554 36778888888888999987 455444443 35
Q ss_pred HHHHHHhhhhCCcc
Q 010881 418 VEKVRRGMEDNEVR 431 (498)
Q Consensus 418 a~~~~~~m~~~~~~ 431 (498)
|-++..++.+.+..
T Consensus 126 ap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 126 APELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHSSS-
T ss_pred hHHHHHHHHHHHhh
Confidence 77787777776654
No 353
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=25 Score=31.34 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=80.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHH
Q 010881 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNY 366 (498)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~ 366 (498)
+-..+.+++++|+..+.+++..|+..++..... ...+...+.+.|.+.|+...-.+..... .-.....
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE-----qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~K 85 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNE-----QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITK 85 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhH-----HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHH
Confidence 344567788899999999988887766422111 2455667788888888876665554433 2112444
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 367 VLGALLNACRV-HGDVDLGKETVESLVERSLDHE------GVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 367 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
...+|+.-+.. ...++.-+.+....++-....- ..-.-++..+.+.|.+.+|+.+.+...
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55666655432 3456666666666655221111 122357788999999999999877664
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.69 E-value=19 Score=30.39 Aligned_cols=68 Identities=16% Similarity=-0.036 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC-------CCChhhHHHHHHHHHccCCHHHH
Q 010881 105 FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV-------NRDVISWTSLINGYAKSGQISIA 173 (498)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A 173 (498)
+.|++.|-.+...+.--++.....|...|. ..+.+++..++-+.. ..|+..+.+|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555544444444444444444444 345555555543321 34556666666666666666655
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.43 E-value=4.4 Score=28.13 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHH---HHHHHhHhcCCcchHHHH
Q 010881 377 VHGDVDLGKETVESLVERSLDHEGVHV---LLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~ 421 (498)
..++.++|+..+..+++..++.+.-|. .|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888887766655544 455677778888877765
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.01 E-value=78 Score=32.74 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=65.2
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHH
Q 010881 97 ACADTSCLFVGLICHAQVIRLGWES---YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA 173 (498)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 173 (498)
-+.+.+.+++|+...+... |..| -..+...++.-+...|++++|-...-.|...+..-|.--+..+...++....
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3445566666665544332 2233 3456677888888889999998888888888888888888777777776554
Q ss_pred HHHHhhCCC-CChhHHHHHHHHHHh
Q 010881 174 RQMFDKMPE-KNAVSWSAMINGYVQ 197 (498)
Q Consensus 174 ~~~~~~~~~-~~~~~~~~li~~~~~ 197 (498)
..++-.-.. -+...|..++..+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 444333222 255677777777766
No 357
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.77 E-value=36 Score=28.66 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=52.0
Q ss_pred HHHHhCCChhhHHHHhhccC-CCChhhH-----HHHHHHHHccCCHHHHHHHHhhCCCCChhH--HHHHHHHHHhCCCHh
Q 010881 131 HLYATCNCMDPARKLFDMSV-NRDVISW-----TSLINGYAKSGQISIARQMFDKMPEKNAVS--WSAMINGYVQVDLFK 202 (498)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~-~~~~~~~-----~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 202 (498)
..+..++++++|..-++... .+....+ -.|.+.....|.+++|+..++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 44555666666666665544 2211122 234455666777778887777777664332 344456777788888
Q ss_pred HHHHHHHHHHHcC
Q 010881 203 EALEHFNYMQLCG 215 (498)
Q Consensus 203 ~a~~~~~~m~~~g 215 (498)
+|..-|++.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888877764
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.64 E-value=13 Score=31.79 Aligned_cols=73 Identities=21% Similarity=0.118 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCC
Q 010881 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----PIEP 363 (498)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p 363 (498)
.+.-++.+.+.+...+++...+.-++. +|. |..+-..+++.|+-.|++++|..-++-. ...+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPt-----------da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPT-----------DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCc-----------cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345567788889999999988887765 333 5777888999999999999998877765 3334
Q ss_pred CHHHHHHHHHH
Q 010881 364 DNYVLGALLNA 374 (498)
Q Consensus 364 ~~~~~~~l~~~ 374 (498)
-...|..+|.+
T Consensus 71 ~a~lyr~lir~ 81 (273)
T COG4455 71 GASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHHH
Confidence 46677777764
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.51 E-value=46 Score=29.81 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNYVLGAL-LNACRVHGDVDLGKETVESLV 392 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~ 392 (498)
-..++..+.+.|.+.+|+.+...+ .-+|+..+...+ -.+|....++.++..-+..+.
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence 345788999999999998876544 335554443322 235666666666666555554
No 360
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.21 E-value=1.2 Score=40.43 Aligned_cols=88 Identities=7% Similarity=-0.023 Sum_probs=73.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881 344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
...|.+++|++.|... ...| ....|..-.+++.+.++...|++-++.+++++|+...-|-.-..+..-.|.|++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3567899999999887 5555 5666666777889999999999999999999999888888888888889999999999
Q ss_pred HHhhhhCCcc
Q 010881 422 RRGMEDNEVR 431 (498)
Q Consensus 422 ~~~m~~~~~~ 431 (498)
+....+.+..
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 9888877664
No 361
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.09 E-value=15 Score=28.59 Aligned_cols=61 Identities=7% Similarity=0.000 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRRG 424 (498)
Q Consensus 361 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (498)
.+-|.......+. |+.. .+.+.++|+.|...+ -..+..|...+..+...|++++|.++++.
T Consensus 62 Y~nD~RylkiWi~-ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 62 YKNDERYLKIWIK-YADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GTT-HHHHHHHHH-HHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-HHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445554444443 3332 238999999998855 45666788999999999999999999864
No 362
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.96 E-value=5.7 Score=35.58 Aligned_cols=50 Identities=6% Similarity=0.072 Sum_probs=34.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
.+.|+.++|..+|+.++.+.|+++.....++.......+.-+|-.++-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 45677777777777777777777777777766666666666666666443
No 363
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=95 Score=33.11 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=89.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 010881 7 IQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP 86 (498)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 86 (498)
+-..+.+.-...|+.+-..++..=... -.+++...++++- .-|..|+..|...|+.++|+++|.+.....-.-
T Consensus 465 IDttLlk~Yl~~n~~~v~~llrlen~~--c~vee~e~~L~k~-----~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~ 537 (877)
T KOG2063|consen 465 IDTTLLKCYLETNPGLVGPLLRLENNH--CDVEEIETVLKKS-----KKYRELIELYATKGMHEKALQLLRDLVDEDSDT 537 (877)
T ss_pred HHHHHHHHHHhcCchhhhhhhhccCCC--cchHHHHHHHHhc-----ccHHHHHHHHHhccchHHHHHHHHHHhcccccc
Confidence 344444555555666666666654422 3567777777653 358888889999999999999998886621001
Q ss_pred C---cchHHHHHHHHHccCCc--HHHHHHHHHHHHhCCCCchhHHH------------HHHHHHHhCCChhhHHHHhhcc
Q 010881 87 N---NYTFSFILRACADTSCL--FVGLICHAQVIRLGWESYDFVLN------------GLLHLYATCNCMDPARKLFDMS 149 (498)
Q Consensus 87 ~---~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~ 149 (498)
| ...+-.++.-+.+.+.. +..+++-....+..+.....++. ..+-.|......+-+..+++.+
T Consensus 538 d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~l 617 (877)
T KOG2063|consen 538 DSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHL 617 (877)
T ss_pred ccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHH
Confidence 1 11233455555555554 66666666655543321111111 1233466777888888888876
Q ss_pred CC----CChhhHHHHHHHHHc
Q 010881 150 VN----RDVISWTSLINGYAK 166 (498)
Q Consensus 150 ~~----~~~~~~~~li~~~~~ 166 (498)
.. .+..-.+.++..|++
T Consensus 618 i~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 618 ISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hHhccccchHHHHHHHHHHHH
Confidence 52 345556666666654
No 364
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.43 E-value=5.7 Score=21.55 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 379 GDVDLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
|+.+.|..+|++++...|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999998888887777766543
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.72 E-value=14 Score=31.86 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--CC----CchHHH
Q 010881 346 AGMLEAAKKVVREM-------PIEPD--NYVLGALLNACRVHGDVD-------LGKETVESLVERS--LD----HEGVHV 403 (498)
Q Consensus 346 ~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--~~----~~~~~~ 403 (498)
...+++|.+.|.-+ +.+|. ...+..+...|...|+-+ .|.+.|.++.+.. |. ......
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34455555544332 33444 344555666677777744 5555555555533 22 234566
Q ss_pred HHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 404 LLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
.++....+.|++++|.+.|.++...+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 78899999999999999999997654
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.08 E-value=73 Score=30.81 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHc
Q 010881 304 SAIELFMRMQLE 315 (498)
Q Consensus 304 ~a~~~~~~m~~~ 315 (498)
++.+-++.|...
T Consensus 298 ~C~~ei~~mk~~ 309 (413)
T PHA02875 298 KCIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHHhh
Confidence 455556666553
No 367
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.59 E-value=25 Score=30.67 Aligned_cols=95 Identities=9% Similarity=-0.078 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM---------PIEPDNYV-----------LGALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
+...-.+-+.+.|++.+|..-|.+. .-+|...- +..+-.++...|++-++++....++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3334455667888888888777655 23443332 233344567789999999999999999
Q ss_pred CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
.|.+..+|+.-+.+.+..=+.++|.+=|....+..
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 99999999999999888888888888888877654
No 368
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.22 E-value=45 Score=30.05 Aligned_cols=122 Identities=13% Similarity=0.233 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHH-CCCCCCcchHHHHHHHHHc-cCC-cHHHHHHHHHHHH-hCCCCchhHHHHHHH
Q 010881 56 WNTMIRGFAEKNEPIKAFALYKQMLR-SDFLPNNYTFSFILRACAD-TSC-LFVGLICHAQVIR-LGWESYDFVLNGLLH 131 (498)
Q Consensus 56 ~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~g~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 131 (498)
|..|+. ++....+|+.+|+..-. ..+--|..+...+++.... .+. +..--++.+-+.. .+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666653 24556788888884322 2345577777888877765 222 2222233333333 235677788888999
Q ss_pred HHHhCCChhhHHHHhhccCC-----CChhhHHHHHHHHHccCCHHHHHHHHhhC
Q 010881 132 LYATCNCMDPARKLFDMSVN-----RDVISWTSLINGYAKSGQISIARQMFDKM 180 (498)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 180 (498)
.++..++++.-.++++.... .|...|..+|....+.||..-...+.++-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 99999999999999987543 37888999999999999998888887754
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.47 E-value=6.5 Score=28.42 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
-++..++.+|++......++..+...|++++|++.+-.+.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555544443
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.30 E-value=1.1e+02 Score=31.71 Aligned_cols=80 Identities=11% Similarity=-0.044 Sum_probs=39.3
Q ss_pred CCchHHHHHHHHhHHCC---CCCCcchHHHHHHHHH--ccCCcHHHHHHHHHHHHhCC---------CCchhHHHHHHHH
Q 010881 67 NEPIKAFALYKQMLRSD---FLPNNYTFSFILRACA--DTSCLFVGLICHAQVIRLGW---------ESYDFVLNGLLHL 132 (498)
Q Consensus 67 ~~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~ 132 (498)
+++..|.+.++.+...- ..|-..++-.++.+.. ..+..+.+.+.++.+..... .|...++..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 67777777777765431 2223333344444432 33445556666655533221 2234455555554
Q ss_pred HH--hCCChhhHHHHh
Q 010881 133 YA--TCNCMDPARKLF 146 (498)
Q Consensus 133 ~~--~~g~~~~a~~~~ 146 (498)
++ ..|+++.+...+
T Consensus 233 ~~~l~~~~~~~~~~~L 248 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKL 248 (608)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 33 455555555544
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.87 E-value=6.8 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=13.9
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHh
Q 010881 94 ILRACADTSCLFVGLICHAQVIRL 117 (498)
Q Consensus 94 ll~~~~~~g~~~~a~~~~~~~~~~ 117 (498)
+..+|...|+.+.|..++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445556666666666666665543
No 372
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.87 E-value=15 Score=33.62 Aligned_cols=94 Identities=7% Similarity=-0.075 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
..+|--=.+-|.+..++..|...|.+- .-..+.+.|+.-..+-...|++..|+.-..+++..+|.+...|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 344555567788999999999999876 22235777888777888889999999999999999999999999999
Q ss_pred HHhHhcCCcchHHHHHHhhh
Q 010881 407 NIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~m~ 426 (498)
.++....++++|....++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999999887777665543
No 373
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.73 E-value=1e+02 Score=31.32 Aligned_cols=272 Identities=13% Similarity=0.041 Sum_probs=153.8
Q ss_pred hhHHHHhhccCCC-ChhhHHHHHH----H-HHccCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhCC-----C
Q 010881 140 DPARKLFDMSVNR-DVISWTSLIN----G-YAKSGQISIARQMFDKMPE--------KNAVSWSAMINGYVQVD-----L 200 (498)
Q Consensus 140 ~~a~~~~~~~~~~-~~~~~~~li~----~-~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-----~ 200 (498)
..|.++++..... +...-..+.. + +....|.+.|+..|+...+ -.....+-+..+|.+.. +
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 4556666554433 3332222222 2 4456788888888877643 13445666777777643 6
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH----hcCCHHHHH
Q 010881 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA----KCGCIETAC 275 (498)
Q Consensus 201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~ 275 (498)
.+.|+.+|.+.-+.| .|+...+...+.-... ..+...|..+|....+.|. ...+-.+..+|. ...+...|.
T Consensus 309 ~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 309 YEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 778999999988876 4554444333332222 3567899999999998883 233333333332 234788899
Q ss_pred HHHhhCCCCCh-hHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH-HHhh----cC
Q 010881 276 SVFDSMPNRDV-FAYTSLIS--GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD-LLGR----AG 347 (498)
Q Consensus 276 ~~~~~~~~~~~-~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~-~~~~----~g 347 (498)
..+.+..+.+. .+.-.+.. .+.. ++.+.+...+..+.+.|..-.. ....+..... .... ..
T Consensus 385 ~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q----------~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 385 AYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQ----------SNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred HHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHh----------hHHHHHHHhcccccccccccc
Confidence 99988876653 22222222 2233 6777777777777665421110 0000100000 0111 23
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC---CcchHHH
Q 010881 348 MLEAAKKVVREMPIEPDNYVLGALLNACRVH----GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE---QWNGVEK 420 (498)
Q Consensus 348 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~ 420 (498)
+...+..++.+....-+......+-..|... .+++.|...|..+...+ ......++.++...- ++..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 5666777777663334555555555544332 36888888888887766 445666666665431 1567888
Q ss_pred HHHhhhhCC
Q 010881 421 VRRGMEDNE 429 (498)
Q Consensus 421 ~~~~m~~~~ 429 (498)
+++...+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 887776644
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.19 E-value=8.7 Score=37.79 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=85.0
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHH--H-HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC
Q 010881 271 IETACSVFDSMPNRDVFAYTSLIS--G-LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG 347 (498)
Q Consensus 271 ~~~A~~~~~~~~~~~~~~~~~li~--~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g 347 (498)
-+-+-.++..|..++...|-+|-. . +...|+...|...+...... .|-+ .-+....|.+.+.+.|
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~--~p~~----------~~v~~v~la~~~~~~~ 656 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNL--APLQ----------QDVPLVNLANLLIHYG 656 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhcc--Chhh----------hcccHHHHHHHHHHhh
Confidence 345556666677666655544422 1 23468888888877766542 2321 2334455667777777
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881 348 MLEAAKKVVREM-PI-EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410 (498)
Q Consensus 348 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (498)
....|-.++.+. .+ ...+.++..+..++....+++.|++.|++++++.|+++..-..|..+-+
T Consensus 657 ~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 657 LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 777787777665 22 3356677788888999999999999999999999998877666654443
No 375
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.19 E-value=1.4e+02 Score=32.59 Aligned_cols=255 Identities=10% Similarity=-0.011 Sum_probs=140.2
Q ss_pred HHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc
Q 010881 43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122 (498)
Q Consensus 43 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 122 (498)
.+.+.+..+++..-...+..+.+.+.. .+...+..+.+. +|...=...+.++.+.+........+..++.. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 444445566776666777777766653 344555555432 23333334444444332211112233333332 45
Q ss_pred hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHh
Q 010881 123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFK 202 (498)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 202 (498)
..+....+..+...+..+ ...+...+..+|...-...+.++.+.+..+. +......++...-.....++...+..+
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 566666666665443221 2334455556677666666777766655433 233344566666666666777666543
Q ss_pred H-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 203 E-ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 203 ~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
. +...+..+.+ .+|...-...+.++...+....+...+..+.+ .++..+-...+.++...+.-+....+...+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L 847 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADVAVPALVEAL 847 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccchHHHHHHHh
Confidence 2 3444555543 45666677777778777776554443433332 346666677777777777654444445555
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 282 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
.+++...-...+.++.+......+...+....+
T Consensus 848 ~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 567777666677777665434456666666555
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.99 E-value=8.9 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCG 215 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g 215 (498)
+..+|...|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777766543
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.95 E-value=68 Score=28.50 Aligned_cols=271 Identities=10% Similarity=0.054 Sum_probs=135.6
Q ss_pred CCCcchHHHHHHH-HHhCCCchHHHHHHHHhHHCCCCCCcc-----hHHHHHHHHHccCCcHHHHHHHHHHHHh---CC-
Q 010881 50 YRTTFIWNTMIRG-FAEKNEPIKAFALYKQMLRSDFLPNNY-----TFSFILRACADTSCLFVGLICHAQVIRL---GW- 119 (498)
Q Consensus 50 ~~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~- 119 (498)
+||+..-|..-.+ -.+..++++|+.-|++..+. .|... ....++....+.+++++....+.+++.. .+
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlel--EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLEL--EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhc--ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4555443332221 12345778888888888773 23222 2344566777778888777777776532 11
Q ss_pred -CCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC--ChhHHHHHHHHHH
Q 010881 120 -ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK--NAVSWSAMINGYV 196 (498)
Q Consensus 120 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~ 196 (498)
.-+....|++++..+...+.+...++|+ ..++.++..... =--|-..|...|.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYe------------------------TTL~ALkdAKNeRLWFKTNtKLgkl~f 156 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYE------------------------TTLDALKDAKNERLWFKTNTKLGKLYF 156 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHH------------------------HHHHHHHhhhcceeeeeccchHhhhhe
Confidence 1223334444444444333333333322 122222222211 0112234566677
Q ss_pred hCCCHhHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCChhHHHHHH--
Q 010881 197 QVDLFKEALEHFNYMQLCGF-----------RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIILGTAII-- 262 (498)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~-- 262 (498)
..+.+.+..++++++.+.-. ..=...|..-|+.|....+-..-..++++..... --|.+.+...+-
T Consensus 157 d~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIREC 236 (440)
T KOG1464|consen 157 DRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIREC 236 (440)
T ss_pred eHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHc
Confidence 77777777777776654210 0112345566666766666666677776654322 233333333221
Q ss_pred --HHHHhcCCHHHHHHH-HhhCCCCChhHHHHHHHHHHhcCChH-----HHHHHHHHHHHcCCCCCc-hhhhhhCCCCCh
Q 010881 263 --DMYAKCGCIETACSV-FDSMPNRDVFAYTSLISGLANHDQSA-----SAIELFMRMQLEGVVPNE-SMSEIYGIEPGV 333 (498)
Q Consensus 263 --~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~li~~~~~~~~~~-----~a~~~~~~m~~~~~~p~~-~~~~~~~~~~~~ 333 (498)
....+.|++++|..- |+.... |-..|... +-+-+-..+.+.|+.|-+ ...+-+.-.|..
T Consensus 237 GGKMHlreg~fe~AhTDFFEAFKN------------YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEI 304 (440)
T KOG1464|consen 237 GGKMHLREGEFEKAHTDFFEAFKN------------YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEI 304 (440)
T ss_pred CCccccccchHHHHHhHHHHHHhc------------ccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHH
Confidence 234566778777543 333321 11111110 011122334556666633 333445567778
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
...+.|+.+|.. ++..+-.+++..-
T Consensus 305 lAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 305 LAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 888889988865 4566666666544
No 378
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.25 E-value=91 Score=29.62 Aligned_cols=155 Identities=10% Similarity=-0.030 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCC--CCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh---------CCCCch
Q 010881 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRL---------GWESYD 123 (498)
Q Consensus 55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 123 (498)
.+.-+...|...|+++.|++.|-+.+.-- .+-....|..+|..-.-.|+|.....+-.+..+. .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 46667778888899999999988865521 1123344566666666778877777666665543 123334
Q ss_pred hHHHHHHHHHHhCCChhhHHHHhh----------ccCCCChhhHHHHHHHHHccCCHHHHHH-----HHhhCCCCChhHH
Q 010881 124 FVLNGLLHLYATCNCMDPARKLFD----------MSVNRDVISWTSLINGYAKSGQISIARQ-----MFDKMPEKNAVSW 188 (498)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~a~~~~~----------~~~~~~~~~~~~li~~~~~~~~~~~A~~-----~~~~~~~~~~~~~ 188 (498)
..+..+.....+ ++..|...|- +++.|...+....+.+++--++-+--.. .|+...+..+..+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 445555555444 5666655542 3444433333333444443333222222 2333333344555
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 189 SAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
..+...| .+++...+++++++..
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhcc
Confidence 5554443 3567778888777754
No 379
>PRK13342 recombination factor protein RarA; Reviewed
Probab=72.10 E-value=99 Score=30.00 Aligned_cols=46 Identities=15% Similarity=-0.036 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh---CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881 187 SWSAMINGYVQ---VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232 (498)
Q Consensus 187 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 232 (498)
.+..+++++.+ .++++.|+..+..|.+.|..|....-..++.++-.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34455555554 47888888888998888877775554444444433
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.97 E-value=21 Score=30.19 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 360 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
...|++.+|..++.++...|+.++|.+..+++...-|.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 66899999999999999999999999999999999993
No 381
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=70.52 E-value=35 Score=26.46 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHH
Q 010881 350 EAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 350 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (498)
+++.+.|... ..+-|+.-....+.---.. +++.++|..|.+.+ -..+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444 4455655544444322222 44678899888765 4456678889999999999999999985
No 382
>PRK10941 hypothetical protein; Provisional
Probab=70.28 E-value=41 Score=30.28 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
..+.+-.+|.+.++++.|+.+.+.+ .+.| ++.-+.--.-.|.+.|.+..|..-++..++..|+++.+-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3456778899999999999999998 5566 5555666677799999999999999999999999875433
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.95 E-value=72 Score=27.51 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHH
Q 010881 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN------RDVFAYTSLISG 295 (498)
Q Consensus 223 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~ 295 (498)
.+..++.+.+.+.+.+++...+.-++.. +.|...-..+++.||-.|++++|..-++-... +....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3344555666677777777766665554 55666677788888888888888877665432 233456666653
No 384
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.35 E-value=30 Score=26.63 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=41.2
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 352 AKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 352 A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
..+-++.+ .+.|++.....-+++|.+.+|+..|.++++-+...-++....|-.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33444444 7889999999999999999999999999998887555444345544
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.72 E-value=38 Score=33.67 Aligned_cols=96 Identities=18% Similarity=0.109 Sum_probs=45.9
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC---CCChhhHHHHHHHHHccCCHHHHHHHH
Q 010881 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV---NRDVISWTSLINGYAKSGQISIARQMF 177 (498)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (498)
.|+...|...+..+....+.........|.+...+.|...+|..++.+.. ...+.++..+.+++....+++.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 34445555444444433333233333344444445555555555443322 223445555556666666666666666
Q ss_pred hhCCCC---ChhHHHHHHHHHH
Q 010881 178 DKMPEK---NAVSWSAMINGYV 196 (498)
Q Consensus 178 ~~~~~~---~~~~~~~li~~~~ 196 (498)
++..+. +.+.-+.|...-|
T Consensus 700 ~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHhcCCCChhhHHHHHHHHH
Confidence 655432 3444455544433
No 386
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.50 E-value=1.1e+02 Score=29.04 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCc-hhhh
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-----VPNE-SMSE 325 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~-~~~~ 325 (498)
+..+.+...+-..+...|+.+.|.+++++.. -.|++...... .+.. ...-
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL------------------------f~~e~~~~~~F~~~~~~~~~g~~rL 92 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL------------------------FAFERAFHPSFSPFRSNLTSGNCRL 92 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHHHHHHHhhhhhcccccCcccc
Confidence 5666777777778888888888888766542 22221111111 0100 0011
Q ss_pred hhCCCCChHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCC--
Q 010881 326 IYGIEPGVQHYGCL---VDLLGRAGMLEAAKKVVREM-PIEP--DNYVLGALLNAC-RVHGDVDLGKETVESLVERSL-- 396 (498)
Q Consensus 326 ~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~-- 396 (498)
.+...-|...|.++ |..+.+.|-+..|.++.+-+ .+.| |+..-..+|+.| .+.++++--+++++.......
T Consensus 93 ~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~ 172 (360)
T PF04910_consen 93 DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN 172 (360)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh
Confidence 12233366666665 66788999999999998887 5555 455555566655 567888888888887655211
Q ss_pred ---CCchHHHHHHHHhHhcCCc
Q 010881 397 ---DHEGVHVLLSNIYASTEQW 415 (498)
Q Consensus 397 ---~~~~~~~~l~~~~~~~g~~ 415 (498)
.-|......+-++...++-
T Consensus 173 ~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 173 WLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred hhhhCccHHHHHHHHHHHhcCc
Confidence 1233455555566666666
No 387
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=66.64 E-value=1.3e+02 Score=29.16 Aligned_cols=189 Identities=12% Similarity=-0.039 Sum_probs=87.7
Q ss_pred HHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHH
Q 010881 143 RKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG 222 (498)
Q Consensus 143 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 222 (498)
..+.+.+..++...-.....++...++......+...+..++.......+.++...+. .+...+....+ .+|...
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~V 163 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALV 163 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHH
Confidence 3333444444444555555555555555554444444444444444444444443331 12233333332 344444
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhcCC
Q 010881 223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS-MPNRDVFAYTSLISGLANHDQ 301 (498)
Q Consensus 223 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 301 (498)
-...+.++...+..+.... +..+.. .+|..+-..-+.+....|. ..|...+.. ...++....-.+...+...|
T Consensus 164 ra~A~raLG~l~~~~a~~~-L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~- 237 (410)
T TIGR02270 164 RAAALRALGELPRRLSEST-LRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG- 237 (410)
T ss_pred HHHHHHHHHhhccccchHH-HHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-
Confidence 4445555554444322222 222211 3455555556666666666 445544443 33344444333333333332
Q ss_pred hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 302 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
..++...+..+.+. ..+-...+.++.+.|+...+.-+.+.|
T Consensus 238 ~~~a~~~L~~ll~d-----------------~~vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 238 GPDAQAWLRELLQA-----------------AATRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred chhHHHHHHHHhcC-----------------hhhHHHHHHHHHHcCCcchHHHHHHHh
Confidence 23555555555543 224445566666666665555555554
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.50 E-value=28 Score=25.28 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=34.4
Q ss_pred hhcCCHHHHHHHHHhC------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 344 GRAGMLEAAKKVVREM------PIEPD-----NYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
.+.|++.+|.+.+.+. ...+. ......+.......|+.++|...+++++++-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4678888887766655 22222 2233344556778899999999999888744
No 389
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.42 E-value=32 Score=26.97 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 331 PGVQHYGCLVDLLGRAGM---LEAAKKVVREM-P-IEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
++..+-..+.-++.+..+ ..+-+.++++. + -.| .......|.-++.+.++++.++++++.+++.+|++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 455666667777777654 55566777776 2 233 3344455667899999999999999999999999864
No 390
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.31 E-value=1e+02 Score=27.49 Aligned_cols=123 Identities=8% Similarity=0.115 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC
Q 010881 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEPD 364 (498)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~ 364 (498)
-+.|...|...+.+.+...+++++...--.-+..--.+ .-..-...|..=|..|....+-.+-..++++. .--|.
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k-KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK-KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh-ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 34466667777777777777777765411111000000 00112456777788888888877777788776 33455
Q ss_pred HHHHHHHHHHH-----HhcCCHHHHHHHHHHHHh----cC-CCCch--HHHHHHHHhHhcC
Q 010881 365 NYVLGALLNAC-----RVHGDVDLGKETVESLVE----RS-LDHEG--VHVLLSNIYASTE 413 (498)
Q Consensus 365 ~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~----~~-~~~~~--~~~~l~~~~~~~g 413 (498)
+.... .|+-| .+.|++++|-.-|=++.+ .+ |.... -|..|++++.+.|
T Consensus 227 PlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 227 PLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 44332 33333 556777777653333332 22 22221 2445666665554
No 391
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.77 E-value=54 Score=24.17 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
..++|..+-+.+...+.. ...+-..=+..+...|++++|..+.+....||...|.+|-. .+.|..+++..-+.+|-.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345666666665554411 22222233445678899999999999999999999987754 456777777777777777
Q ss_pred cC
Q 010881 315 EG 316 (498)
Q Consensus 315 ~~ 316 (498)
+|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 65
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=62.87 E-value=1.3e+02 Score=27.96 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHhhcC------------CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 332 GVQHYGCLVDLLGRAG------------MLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
|..+|-.++..--..- -.+.-+.+++++ ...| +...+..++..+.+..+.+...+-+++++...|.
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~ 97 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG 97 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Confidence 6777777775432221 134455667776 3355 6777778888899999999999999999999999
Q ss_pred CchHHHHHHHHhHh---cCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHh
Q 010881 398 HEGVHVLLSNIYAS---TEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474 (498)
Q Consensus 398 ~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 474 (498)
+...+..++..... .-.+++...+|.+..+.=.....+. .......-.-...+...+.++..-+++
T Consensus 98 ~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~-----------~~~~~~~~~~e~~~l~v~~r~~~fl~~ 166 (321)
T PF08424_consen 98 SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR-----------MTSHPDLPELEEFMLYVFLRLCRFLRQ 166 (321)
T ss_pred ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc-----------cccccchhhHHHHHHHHHHHHHHHHHH
Confidence 99888877765544 3356677777766654311100110 000011112235566667777888899
Q ss_pred cCccc
Q 010881 475 LCFFD 479 (498)
Q Consensus 475 ~g~~~ 479 (498)
+||.+
T Consensus 167 aG~~E 171 (321)
T PF08424_consen 167 AGYTE 171 (321)
T ss_pred CCchH
Confidence 99865
No 393
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.18 E-value=16 Score=28.09 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=22.8
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
-|++..-...+++|.+-+|+..|+.+|+-.+.
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35566667777777777777777777777655
No 394
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.63 E-value=99 Score=26.14 Aligned_cols=89 Identities=9% Similarity=-0.042 Sum_probs=61.8
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhH--HHHHHHHHHhcCChH
Q 010881 228 TACAFLGALDQGRWIHAYVDRNGIELD--IILGTAIIDMYAKCGCIETACSVFDSMPNRDVFA--YTSLISGLANHDQSA 303 (498)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 303 (498)
..+...++++.|...++.........+ ..+--.|.......|.+++|...++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345667777777777776654311111 1222345667778999999999999888774333 444456799999999
Q ss_pred HHHHHHHHHHHcC
Q 010881 304 SAIELFMRMQLEG 316 (498)
Q Consensus 304 ~a~~~~~~m~~~~ 316 (498)
+|..-|.+.+..+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999998875
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.56 E-value=21 Score=24.87 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=35.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 010881 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 355 (498)
..++.++|+..|+..++.-..|.. --.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~----------rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRED----------RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999886332221 135677788888888988888765
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.33 E-value=29 Score=31.14 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
+++.....|..+|.+.+|.++-++...- +...|-.|+..++..|+--.|..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445556677777777777777666542 445566677777777776666666666644
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.51 E-value=61 Score=25.78 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881 349 LEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 349 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (498)
-+.|.++.+-|| ...............|++..|.++.+.++..+|++..+-...+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356666676663 123334455667789999999999999999999999888888888877765443
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.49 E-value=1.3e+02 Score=27.10 Aligned_cols=85 Identities=8% Similarity=0.035 Sum_probs=42.5
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---
Q 010881 192 INGYVQVDLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA--- 266 (498)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 266 (498)
|.+++..++|.+++...-+--+. .++|. ....-|-.|.+.+.+..+.++-..-.+..-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 55666667776665543333221 12332 223333335566666665555544333222223334555555544
Q ss_pred --hcCCHHHHHHHH
Q 010881 267 --KCGCIETACSVF 278 (498)
Q Consensus 267 --~~g~~~~A~~~~ 278 (498)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 367777777765
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.39 E-value=66 Score=28.85 Aligned_cols=85 Identities=13% Similarity=-0.048 Sum_probs=60.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHh--
Q 010881 225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLAN-- 298 (498)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~-- 298 (498)
.-|++++..+++.++....-+--+.--+....+...-|-.|.+.++...+.++-..... .+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 44788888899988876544333222233455666677789999999988888776543 345568888777665
Q ss_pred ---cCChHHHHHHH
Q 010881 299 ---HDQSASAIELF 309 (498)
Q Consensus 299 ---~~~~~~a~~~~ 309 (498)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 59999999887
No 400
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=59.54 E-value=1.5e+02 Score=27.59 Aligned_cols=164 Identities=9% Similarity=0.022 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhcCCC-CChhHHHHHhhhcCCCCcchHH-----HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHH
Q 010881 21 FAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWN-----TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94 (498)
Q Consensus 21 ~~~~~l~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 94 (498)
..+|++++.-...+. ..++.|...|..=. ....|- -+.+.+++.++-+.+..+-+.+.. -|... ..++
T Consensus 130 A~fhA~v~~~L~~p~S~yye~a~~Ylsg~~--~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~---lP~~v-l~aL 203 (340)
T PF12069_consen 130 AMFHAQVRAQLGQPASQYYEHAQAYLSGQL--GWDNWQTLGLQGIADICARLDQEDNAQLLRKALPH---LPPEV-LYAL 203 (340)
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHcCCc--chhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhh---CChHH-HHHH
Confidence 567788776665522 34677777665311 133444 355778888777766555554443 23333 3445
Q ss_pred HHHHHccCCcHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC-C---ChhhHHHH-HHHHHccC
Q 010881 95 LRACADTSCLFV-GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN-R---DVISWTSL-INGYAKSG 168 (498)
Q Consensus 95 l~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~---~~~~~~~l-i~~~~~~~ 168 (498)
..++-...-.+. +..+.+.+... +|......++++.+...........++.... + +......+ .+++.-..
T Consensus 204 ~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~ 280 (340)
T PF12069_consen 204 CGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLK 280 (340)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcC
Confidence 544433332222 33344444433 7888888888888877666555553444332 2 22222221 12233345
Q ss_pred CHHHHHHHHhhCCCCC-hhHHHHHHH
Q 010881 169 QISIARQMFDKMPEKN-AVSWSAMIN 193 (498)
Q Consensus 169 ~~~~A~~~~~~~~~~~-~~~~~~li~ 193 (498)
+.+.+..+++.+-..+ -..|+.+..
T Consensus 281 d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 281 DPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred CHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6666666666665443 455555544
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.09 E-value=1.4e+02 Score=26.87 Aligned_cols=157 Identities=10% Similarity=0.001 Sum_probs=73.7
Q ss_pred CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHH----hHHCCCCCCcchHHHHHHHHHccCCcH-HHHHH
Q 010881 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQ----MLRSDFLPNNYTFSFILRACADTSCLF-VGLIC 110 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~g~~~-~a~~~ 110 (498)
+++++|.+++-. -...+.+.|+...|-++-.- ..+.+.++|......++..+...+.-+ .-.++
T Consensus 4 kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~f 72 (260)
T PF04190_consen 4 KKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKF 72 (260)
T ss_dssp T-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHH
T ss_pred ccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHH
Confidence 567777776642 12234455555444433322 233455555555455555544332211 12223
Q ss_pred HHHHHH---hC--CCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCCh
Q 010881 111 HAQVIR---LG--WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185 (498)
Q Consensus 111 ~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 185 (498)
.+.+++ .| ..-++..+..+...|.+.|++.+|+..|-....++...+..++..+...|...++ +.
T Consensus 73 i~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dl 142 (260)
T PF04190_consen 73 IKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DL 142 (260)
T ss_dssp HHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HH
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hH
Confidence 333322 11 2346677888888888888888888877555444444443344333333332222 11
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHc
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLC 214 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (498)
.. .-.+--|...++...|...++...+.
T Consensus 143 fi-~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 143 FI-ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HH-HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 22233466677788888777766544
No 402
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.44 E-value=1.9e+02 Score=28.37 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=95.1
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCC-CCC--H-----HHHHHHHH-HHhccCChHHHHHHHHHHHHhCCCCChhHH--HHHH
Q 010881 194 GYVQVDLFKEALEHFNYMQLCGF-RPN--H-----AGIVGALT-ACAFLGALDQGRWIHAYVDRNGIELDIILG--TAII 262 (498)
Q Consensus 194 ~~~~~g~~~~a~~~~~~m~~~g~-~p~--~-----~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~ 262 (498)
+-.-.|++.+|++-..+|++.-. .|. . .....++. .|...+.++.|..-|....+.--..|...+ ..+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 33457999999999999987421 232 1 11222333 345678899999888877665434444333 3456
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHH--------HHH--HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC
Q 010881 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSL--------ISG--LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~ 332 (498)
-.|.+.|+.+.-.++++.+..+|..++... +.+ ....+++.+|...+++-++..-.-| -....
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed-------~~rL~ 484 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED-------LNRLT 484 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh-------HHHHH
Confidence 678999999999999998887654333221 112 2357899999999988766421111 00111
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVRE 358 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (498)
......|...+...|+..++.....-
T Consensus 485 a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 485 ACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHHHHHHHHhcchHHHHhccch
Confidence 22233334455566777777665543
No 403
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=58.42 E-value=1.1e+02 Score=25.85 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHH-HHHhcC--CHHHHHHHHHHHHhcCCCC-------ch
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREM-----PIEPDNYVLGALLN-ACRVHG--DVDLGKETVESLVERSLDH-------EG 400 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~-~~~~~g--~~~~A~~~~~~~~~~~~~~-------~~ 400 (498)
++..+-.....|++++|..-++++ .++.-...|..+.. +++.++ .+-+|..++.-......++ +.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~ 111 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPI 111 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHH
Confidence 344455566788899999888887 22222334444444 444444 4567777777666543221 11
Q ss_pred HHH-HHHH----------HhHhcCCcchHHHHHHhhhh
Q 010881 401 VHV-LLSN----------IYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 401 ~~~-~l~~----------~~~~~g~~~~a~~~~~~m~~ 427 (498)
.|. .++. -..+.|+++.|.+.++-|.+
T Consensus 112 ~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 112 AYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222 2222 24567899999999999875
No 404
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=58.10 E-value=83 Score=24.37 Aligned_cols=64 Identities=17% Similarity=0.083 Sum_probs=47.4
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHH
Q 010881 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGA-LLNACRVHGDVDLGKETVESL 391 (498)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 391 (498)
|-+--..+-.++..++.-.|..++|.++++..+.-++....|. ++..|....+-++..++-++.
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333566778888899999999999999998855566555554 788888888777776665544
No 405
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=58.03 E-value=57 Score=24.98 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchHHH----HHHHHhHhcCCcchHHHHHHhh
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLV-------ERSLDHEGVHV----LLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 425 (498)
++..|-.++...|++++++.-.+.++ +++.+.-..|. .-+.++...|+.++|...|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34444445555555554444333333 23333333332 3445666778888888777654
No 406
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.01 E-value=2.4e+02 Score=29.40 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
+...++-.|....+++..+++.+.+..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 444555566666667777776666654
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.59 E-value=29 Score=25.21 Aligned_cols=54 Identities=6% Similarity=-0.002 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC----C-----chHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 375 CRVHGDVDLGKETVESLVERSLD----H-----EGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
..+.|++..|.+.+.+..+.... . ......++......|++++|...+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46789999998877777653221 1 123445777888899999999999888753
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.81 E-value=95 Score=24.11 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358 (498)
Q Consensus 304 ~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (498)
.+..+|..|..+|+--. -+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~-----------~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK-----------LALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTT-----------BHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 89999999999876544 477888899999999999999999874
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.37 E-value=17 Score=31.39 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+.++.+.|.+++.+++++-|+....|..++..-.+.|+++.|.+.+++..+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4455555555555555555555555555555555555555555555555443
No 410
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.24 E-value=2.6e+02 Score=29.04 Aligned_cols=380 Identities=9% Similarity=-0.112 Sum_probs=183.8
Q ss_pred ChhHHHHHhhhcCC-CCcc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 010881 37 DLSHGYRLFVCLQY-RTTF-IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114 (498)
Q Consensus 37 ~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 114 (498)
..++...+++.-+. |-.. .=...+..+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46666666665442 3221 122334455566666666552211 1223333345566666777766666665555
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCCh------------------hhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010881 115 IRLGWESYDFVLNGLLHLYATCNCM------------------DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176 (498)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~------------------~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 176 (498)
-..|. .....++.++..+.+.|.+ ..|..+...+..........++..+ .+...+...
T Consensus 156 W~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~ 231 (644)
T PRK11619 156 WLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETF 231 (644)
T ss_pred hccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHH
Confidence 54442 2345555566555554443 3333333322111111122222222 223333333
Q ss_pred HhhCCCCChhHHHHHHHHH--HhCCCHhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881 177 FDKMPEKNAVSWSAMINGY--VQVDLFKEALEHFNYMQLCG-FRPNHA--GIVGALTACAFLGALDQGRWIHAYVDRNGI 251 (498)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 251 (498)
+.... ++...-..++.++ ....+.+.|...+....... ..+... ....+.......+...++...+......
T Consensus 232 ~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-- 308 (644)
T PRK11619 232 ARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-- 308 (644)
T ss_pred hhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--
Confidence 33321 1211111111122 23456688888888764433 222222 1222222222222244555555543322
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc---hhhh
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---SMSE 325 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~ 325 (498)
..+......-+......++++.+...+..|... ...-.--+.+++...|+.++|...|+++... .+- --..
T Consensus 309 ~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~fYG~LAa~ 385 (644)
T PRK11619 309 SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RGFYPMVAAQ 385 (644)
T ss_pred cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CCcHHHHHHH
Confidence 124444555555666888888888888888641 2222333566666788999998888886332 111 0000
Q ss_pred hhCCC--------CCh------HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881 326 IYGIE--------PGV------QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391 (498)
Q Consensus 326 ~~~~~--------~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 391 (498)
..|.. |.. ..-..-+..+...|....|...+..+.-..+......+.......|..+.++......
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00110 100 0111234556677888899888887722345555666666667788888888766554
Q ss_pred HhcC---CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881 392 VERS---LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 392 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 431 (498)
...+ -..+..|...+..+.+.-.++.++-.--...+.++.
T Consensus 466 ~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~ 508 (644)
T PRK11619 466 KLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWN 508 (644)
T ss_pred hhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCC
Confidence 3211 112334555666666665666655433233344443
No 411
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.20 E-value=77 Score=22.86 Aligned_cols=53 Identities=23% Similarity=0.200 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHhHhcCCcc
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLD--HEGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 416 (498)
|...-..+...+...|+++.|++.+-.+++.+++ +...-..++.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5667777888899999999999999998887755 3556677777777777754
No 412
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=54.90 E-value=1.4e+02 Score=28.35 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCch----
Q 010881 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL------------LNACRVHGDVDLGKETVESLVERSLDHEG---- 400 (498)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---- 400 (498)
..|...+-..|+.++|..++.+.+++ ||.++ ++.|...+|+-.|.-+-+++...-.+.+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34667778899999999999987432 33332 46788889999999888888765544332
Q ss_pred ---HHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCc
Q 010881 401 ---VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477 (498)
Q Consensus 401 ---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 477 (498)
.|..++.+..+.+.+=++.+.++..-+-|..+....-|......+-.|..-.+ ...+-...+.... .-++.--
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp---~dneQsdll~~is-~dKkL~e 286 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAP---HDNEQSDLLARIS-NDKKLSE 286 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecC---CCcHHHHHHHHHh-ccccccc
Confidence 36677777778888989999998887665443322224433333322333222 2223333333333 4445555
Q ss_pred ccCCcc
Q 010881 478 FDDGNE 483 (498)
Q Consensus 478 ~~~~~~ 483 (498)
.|+...
T Consensus 287 ~p~~k~ 292 (439)
T KOG1498|consen 287 LPDYKE 292 (439)
T ss_pred CccHHH
Confidence 555543
No 413
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.42 E-value=1.1e+02 Score=27.86 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHH
Q 010881 155 ISWTSLINGYAKSG-QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205 (498)
Q Consensus 155 ~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (498)
..|..++++-.=.. .---|.+.++. .-+|..|+.+++..|+.+-.+
T Consensus 295 ivWs~iMsaveWnKkeelva~qalrh-----lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 295 IVWSGIMSAVEWNKKEELVAEQALRH-----LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeHhhhhHHHhhchHHHHHHHHHHHH-----HHhhhHHHHHHhcCChHHHHH
Confidence 35777776632221 11223344433 346888999999999877554
No 414
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.10 E-value=1.1e+02 Score=24.42 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHhCCC-HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881 184 NAVSWSAMINGYVQVDL-FKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 233 (498)
+...|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45567777777655544 334566777777766777777777777776554
No 415
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.03 E-value=1.3e+02 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 010881 254 DIILGTAIIDMYAKCGCIETACSVFDS 280 (498)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 280 (498)
--.+.|.....+.+.|.+|.|..++++
T Consensus 180 rCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 180 RCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345667777777788888888877774
No 416
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.84 E-value=1.5e+02 Score=25.92 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH--HH-HhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881 339 LVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGA---LLN--AC-RVHGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~~--~~-~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
+...-...+++.+|..+|++. .+..+..-|.. ++. .| ....+.-.+...+++..+.+|.-..+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 344445567777777777776 22222222211 111 12 22356667777777777788774433
No 417
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.67 E-value=93 Score=23.33 Aligned_cols=79 Identities=10% Similarity=0.130 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
..++|..+.+.+...+. ....+-..-+..+.+.|+++.|...=.....||...|.+|- -.+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 46777777777777653 23333334445667888888885554455567888777664 3467777888888887765
Q ss_pred cC
Q 010881 315 EG 316 (498)
Q Consensus 315 ~~ 316 (498)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.40 E-value=21 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=21.4
Q ss_pred hCCCchHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 010881 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97 (498)
Q Consensus 65 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 97 (498)
..|.-..|..+|.+|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345666778888888888877764 5666654
No 419
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.18 E-value=52 Score=20.33 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=17.5
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010881 196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227 (498)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 227 (498)
.+.|-.+++...+++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555666666666555555555554444
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.85 E-value=51 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
.-|..|+.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999999877
No 421
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.30 E-value=1.5e+02 Score=26.13 Aligned_cols=84 Identities=13% Similarity=-0.092 Sum_probs=50.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHhcCChHH
Q 010881 229 ACAFLGALDQGRWIHAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPN--RDVF-AYTSLISGLANHDQSAS 304 (498)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~ 304 (498)
.|.....++.|...|.+.... .|++ ..|+.=+-+|.+..+++.+..--.+..+ ||.+ ...-+..++.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 355556677777766555543 4555 3445566667777777766654444433 3333 33445556666777777
Q ss_pred HHHHHHHHHH
Q 010881 305 AIELFMRMQL 314 (498)
Q Consensus 305 a~~~~~~m~~ 314 (498)
|+..+.+...
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777644
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.19 E-value=32 Score=31.14 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 225 (498)
-|+..|....+.||+++|+.++++..+.|..--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 366888888888888888888888888876555445443
No 423
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.41 E-value=37 Score=30.78 Aligned_cols=76 Identities=5% Similarity=-0.036 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA-LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
.|+..|...+....+.|.+.+.-.++.+. ...| |+..|-. .-.-+...++++.+..+|.+.++.+|++|..|....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 36777777777777788888888888887 4455 5555533 223457789999999999999999999998766443
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.86 E-value=46 Score=20.60 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=14.7
Q ss_pred hCCCchHHHHHHHHhHHCCCCCCcchHHHHH
Q 010881 65 EKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95 (498)
Q Consensus 65 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 95 (498)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555444444444433
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.85 E-value=18 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=23.4
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881 197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229 (498)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 229 (498)
..|.-..|..+|++|++.|-+||. ++.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 446667899999999999998884 4555543
No 426
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.66 E-value=88 Score=25.05 Aligned_cols=64 Identities=6% Similarity=-0.066 Sum_probs=44.7
Q ss_pred HHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 75 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+.+.+.+.|++++..- ..++..+...++.-.|..+++.+.+.++..+..|...-++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 4445566677665443 456777777777788999999999888877776665666777766643
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.58 E-value=18 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLV 392 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 392 (498)
.-.-.+|.++...|++++|.++++.+.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445566666666666666655554
No 428
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.24 E-value=1.1e+02 Score=29.46 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCC-----------CCChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMP-----------EKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
...|++..+-.||+..|+++++.+. .-.+.+|..+.-+|.-.+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778777777776654 1245677778888888899999988888764
No 429
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.17 E-value=50 Score=28.62 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=48.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 342 LLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
...+.++.+.|.+++.+. ...| ....|..+...-.+.|+++.|.+.|++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678889999999988 5555 678888888888999999999999999999887643
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.90 E-value=3.5e+02 Score=28.87 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=107.7
Q ss_pred HccCCHHHHHHHHhhCC----CCCh-------hHHHHHH-HHHHhCCCHhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 010881 165 AKSGQISIARQMFDKMP----EKNA-------VSWSAMI-NGYVQVDLFKEALEHFNYMQLC----GFRPNHAGIVGALT 228 (498)
Q Consensus 165 ~~~~~~~~A~~~~~~~~----~~~~-------~~~~~li-~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 228 (498)
...+++++|..+..+.. .++. ..++.+- ......|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45677888877776543 2221 1343332 2334568888888887776653 12334455566666
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHH---HH--HHHHhcCCH--HHHHHHHhhCCC-----CC-----hhHHHH
Q 010881 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTA---II--DMYAKCGCI--ETACSVFDSMPN-----RD-----VFAYTS 291 (498)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~--~~~~~~g~~--~~A~~~~~~~~~-----~~-----~~~~~~ 291 (498)
+..-.|++++|..+.....+..-..++..+.. +. ..+...|+. ++....|..... .. ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778889888888777665432333333322 22 223445532 222222322221 11 123333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChH--HHHHHHHHHhhcCCHHHHHHHHHhC-----CC--C
Q 010881 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ--HYGCLVDLLGRAGMLEAAKKVVREM-----PI--E 362 (498)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~ 362 (498)
+..++.+ .+.+..-...-.+.|.. +...|-.. .+..|+......|++++|...++++ .- .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~--------~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSV--------YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhh--------cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 4444443 33333322222222110 01111111 2236778888899999998888877 11 2
Q ss_pred CCHHHHHHHHH--HHHhcCCHHHHHHHHHH
Q 010881 363 PDNYVLGALLN--ACRVHGDVDLGKETVES 390 (498)
Q Consensus 363 p~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 390 (498)
++..+-...+. .....|+...+.....+
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222222 23556777777766655
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.66 E-value=68 Score=27.08 Aligned_cols=55 Identities=16% Similarity=-0.132 Sum_probs=34.2
Q ss_pred hCCCchHHHHHHHHhHHC-CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCC
Q 010881 65 EKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119 (498)
Q Consensus 65 ~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 119 (498)
..++.+......+.+.+. ...|+..+|..++.++...|+.++|.++.+++...-+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444444333333321 3557777777777777788888888777777776543
No 432
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.61 E-value=95 Score=22.25 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 010881 267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 305 (498)
..|+.+.|.+++..+. ..+..|..++.++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666666666666666654433
No 433
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.60 E-value=1.6e+02 Score=24.86 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CC---
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVV-REMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL-----------DH--- 398 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~--- 398 (498)
..|....+.-++.-.-+++-+.+ -++| -+++-.|.+.-++.++.++++.+.++.. ..
T Consensus 108 vPFceFAetV~k~~q~~e~dK~~LGRiG--------iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~as 179 (233)
T PF14669_consen 108 VPFCEFAETVCKDPQNDEVDKTLLGRIG--------ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLAS 179 (233)
T ss_pred CCHHHHHHHHhcCCccchhhhhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCc
Confidence 44666666666554444433322 2222 3456677788889999999998876432 11
Q ss_pred -chHHHHHHHHhHhcCCcchHHHHHH
Q 010881 399 -EGVHVLLSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 399 -~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (498)
-...+..+.++.+.|..|.|..+++
T Consensus 180 rCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 180 RCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 1245567789999999999999985
No 434
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.12 E-value=2.2e+02 Score=25.79 Aligned_cols=145 Identities=11% Similarity=-0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHhhCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh
Q 010881 271 IETACSVFDSMPNR-DVFAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR 345 (498)
Q Consensus 271 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (498)
...|...|+...+. +......|...|.. ..+..+|..+|++..+.|..+. ..+...+...|..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a------------~~~~~~l~~~~~~ 160 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA------------ALAMYRLGLAYLS 160 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH------------HHHHHHHHHHHHc
Confidence 45555555544432 22333334444433 2367788888888887763221 1223344444433
Q ss_pred cC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC-
Q 010881 346 AG-------MLEAAKKVVREMPIEPDNYVLGALLNACR----VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE- 413 (498)
Q Consensus 346 ~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 413 (498)
.+ +...|...+.++-..-+......+...|. ...+..+|..+|.++.+.+. ......+. .+...|
T Consensus 161 g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 161 GLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred ChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 21 33478888887711123444444444442 23488999999999999887 44555666 555555
Q ss_pred --------------CcchHHHHHHhhhhCCc
Q 010881 414 --------------QWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 414 --------------~~~~a~~~~~~m~~~~~ 430 (498)
+...|...+......+.
T Consensus 238 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 238 GVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 44555666655554443
No 435
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=47.00 E-value=64 Score=22.95 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=17.7
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCC
Q 010881 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 200 (498)
.+.+.+.++++.++.++..+|..+..++-..|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 344555555555555555555555555555443
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.65 E-value=2.7e+02 Score=26.66 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPN------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 330 (498)
.+.-+.+-|..+|+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|.....+..+.... |+........+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chhhhhHHHhcC
Confidence 456677888899999999999988664 23345666666666678888777777776553 111011111234
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
+-...+..|.....+ ++..|...|-..
T Consensus 229 ~kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 445666666665555 777777666554
No 437
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.01 E-value=49 Score=32.02 Aligned_cols=97 Identities=9% Similarity=-0.010 Sum_probs=70.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 010881 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGAL 371 (498)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 371 (498)
..+...+.++.|..++.+..+. .|| .+..|..-..++.+.+++..|+.-+.++ ...| ....|..=
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpn-----------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rr 78 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPN-----------CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRR 78 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCc-----------ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeec
Confidence 3455677889999999998874 343 3444555558888999999998777766 5455 34445444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
..+|.+.+.+.+|+..|+....+.|+++.+-.
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence 56677778899999999999999999875433
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=1.1e+02 Score=27.63 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNYVLGALLN---ACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
...+..+.+.|++.++.+.+.+.+.+. |.+.|.. .+.++ .|....-+++-++..+.+++.+.+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~--l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF--LCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH--HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 445555666666666666666655443 3333322 22222 222333345555566666665544
No 439
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.71 E-value=3.1e+02 Score=27.05 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=69.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC---ChHHHHHHHHHHhhcCCHHHHHHHHHhC----------CC
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP---GVQHYGCLVDLLGRAGMLEAAKKVVREM----------PI 361 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~ 361 (498)
-+.-.|++.+|.+++...--.. .|. .-+.| .-..||.|.-.+.+.|.+.-+..+|.+. |+
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~-~~g------~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHK-EAG------GTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHhcchHHHHHHHHhccccc-ccC------ccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 3556788899988775532110 111 01122 2223466666666677666555555443 44
Q ss_pred CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 362 EPD-----------NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 362 ~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
+|. ..+||. .-.|...|++-.|.+.|.++....-.+|..|..|+.+|.-.
T Consensus 322 ~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 442 223332 33578899999999999999998888889999999988654
No 440
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.08 E-value=82 Score=30.23 Aligned_cols=59 Identities=12% Similarity=-0.059 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREMP---------IEP-DNYVLGALLNACRVHGDVDLGKETVESLV 392 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 392 (498)
.+...|++.++-.||+..|+++++.+. +.+ ...++-.+.-+|.-.+++.+|.+.|..++
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788899999999999999882 222 34456666778888999999999998876
No 441
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.64 E-value=3.6e+02 Score=27.55 Aligned_cols=76 Identities=11% Similarity=-0.025 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010881 170 ISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD 247 (498)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (498)
......++...+-.+...-.-++..|.+.|-.+.|.++++.+-..- ....-|...+..+.+.++...+..+...+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445555554555556667777888888888888777765431 123345555666666666655554444443
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.35 E-value=2.4e+02 Score=25.33 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 010881 254 DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303 (498)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 303 (498)
++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~ 138 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS 138 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc
Confidence 56778888899999999999998876655444444433444333334333
No 443
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.10 E-value=1.4e+02 Score=22.50 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=29.1
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
+++++++.+.+- .-|..|+..|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~~-----~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEH-----GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHc-----CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 445555555332 3578888889999999999999988876
No 444
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.05 E-value=1.3e+02 Score=24.00 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=19.5
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269 (498)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (498)
+..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3333344444455555555555444444444334444444444
No 445
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.63 E-value=8e+02 Score=31.26 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=36.5
Q ss_pred CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
..++.....++...|... ...+.=--++++-. ...=+...-.|.+.|.+++|..+|++...
T Consensus 2450 ~~~~~~~~dsl~elY~~L--~E~Dm~~Glwrrr~---~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~ 2510 (3550)
T KOG0889|consen 2450 TKGDESCLDSLAELYRSL--NEEDMFYGLWRRRA---KFPETMVALSYEQLGFWEEAQSLYEKAQV 2510 (3550)
T ss_pred hhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhh---ccHHHHHHHHHHHhhhHHHHhhHHHHHHH
Confidence 345666777777888777 55554444444321 11112334456677888888888888653
No 446
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.54 E-value=1.2e+02 Score=29.36 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC
Q 010881 103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV 150 (498)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (498)
.+++-.++++.+.+.| .+| ....-++.|.+.+++++|...+++..
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~ 113 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESI 113 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhh
Confidence 3455555555555554 122 22334566666666666666665443
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.47 E-value=33 Score=31.02 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCC
Q 010881 56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFL 85 (498)
Q Consensus 56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 85 (498)
||..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555555555555555555555555543
No 448
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.88 E-value=1.2e+02 Score=21.55 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=17.9
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 010881 269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301 (498)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 301 (498)
.+.+.|.++++.++.++..+|..+..++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 345555555555555555555555555554443
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.10 E-value=49 Score=21.83 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
.-.-.+|.++...|++++|.++.+++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344578889999999999998888764
No 450
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.38 E-value=3.4e+02 Score=26.36 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREMPI--EPDNYVLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
...|+.-|...|+..+|.+.++++++ --....+.+++.+.-+.|+-..-+.+++....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45677888889999999999999843 33567788888888888887665555555544
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.62 E-value=5.6e+02 Score=28.55 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=96.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-------------------C-----------C--hhHHHHHHHHHHhcCChHHHHHHHH
Q 010881 263 DMYAKCGCIETACSVFDSMPN-------------------R-----------D--VFAYTSLISGLANHDQSASAIELFM 310 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~-------------------~-----------~--~~~~~~li~~~~~~~~~~~a~~~~~ 310 (498)
.+|..+|...+|.+.|.+... + . ..-|...++.+-+.+..+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 346677888888887776542 0 1 2347778888888999999999888
Q ss_pred HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH------
Q 010881 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDL------ 383 (498)
Q Consensus 311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~------ 383 (498)
...+. +.++ .+.-..+++.+.+.....|.+-+|...+-+- .......+...++..++.+|.++.
T Consensus 1008 ~AIe~-l~dd--------~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpf 1078 (1480)
T KOG4521|consen 1008 KAIEN-LPDD--------NPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPF 1078 (1480)
T ss_pred HHHHh-CCCc--------chhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCc
Confidence 87774 3333 1223556778888888899999988877653 111224467777777777776543
Q ss_pred ------HHH-HHHHHHhcCCC-CchHHHHHHHHhHhcCCcchHHHH
Q 010881 384 ------GKE-TVESLVERSLD-HEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 384 ------A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
... +++..-+..|. ....|..|-..+...++|.+|..+
T Consensus 1079 igl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1079 IGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred cchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 223 33333333333 334455565666778888887654
No 452
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=40.40 E-value=73 Score=18.29 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHH
Q 010881 371 LLNACRVHGDVDLGKET 387 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~ 387 (498)
+.-.+-..|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33444555555555555
No 453
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.96 E-value=2.6e+02 Score=24.60 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHH
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA-FLGALDQGRWIHAYVDR 248 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 248 (498)
.++..+-+.|+++++...++++...+...+..--+.+-.+|- ..|....+.+++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356677788889999999999888877777666666655552 23444455555554443
No 454
>PRK02287 hypothetical protein; Provisional
Probab=39.63 E-value=2.2e+02 Score=23.55 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG-ALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
-..+..+++.++.-.|..++|.++++....-++....| .++..|.+..+-++..++-++.++
T Consensus 106 kLs~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 106 KLSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 46677888889999999999999999884445544444 478888888888877777666554
No 455
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.04 E-value=1.9e+02 Score=29.43 Aligned_cols=85 Identities=8% Similarity=-0.003 Sum_probs=64.7
Q ss_pred hhcCCHHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881 344 GRAGMLEAAKKVVRE-MPIEP-D------NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~-~~~~p-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (498)
.+..++..+.+.|.. |..-| | ......|--+|....+.|.|.++++++.+.+|.++-.......+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 356677777777654 32222 1 334556666788888999999999999999999987777888888999999
Q ss_pred chHHHHHHhhhhC
Q 010881 416 NGVEKVRRGMEDN 428 (498)
Q Consensus 416 ~~a~~~~~~m~~~ 428 (498)
++|+.+.......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988777643
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.93 E-value=1.9e+02 Score=25.59 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHH
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
.+...|.+.|++++|.++|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566677777777777777663
No 457
>PHA03100 ankyrin repeat protein; Provisional
Probab=38.82 E-value=4e+02 Score=26.33 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=65.2
Q ss_pred HHHHhhcCCCCChhHHHHHhhhcCCCCcch--HHHHHHH-----HHhCCCchHHHHHHHHhHHCCCCCC---cchHHHHH
Q 010881 26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFI--WNTMIRG-----FAEKNEPIKAFALYKQMLRSDFLPN---NYTFSFIL 95 (498)
Q Consensus 26 l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~-----~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll 95 (498)
.+...++. |+.+-+..+++.-..++... ....+.. .+..|+.+ +.+.+.+.|..++ ....+.+.
T Consensus 38 ~L~~A~~~--~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tpL~ 111 (480)
T PHA03100 38 PLYLAKEA--RNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITPLL 111 (480)
T ss_pred hhhhhhcc--CCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCchhh
Confidence 33444555 77777777776544332211 1122222 33344433 3333344444332 22233333
Q ss_pred HHHH-ccCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCC--ChhhHHHHhhccCCCChh--hHHHHHHHHHccC
Q 010881 96 RACA-DTSCLFVGLICHAQVIRLGWESYDF--VLNGLLHLYATCN--CMDPARKLFDMSVNRDVI--SWTSLINGYAKSG 168 (498)
Q Consensus 96 ~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~ 168 (498)
.+.. ..|+.+- ++.+.+.|..++.. ...+.+...+..| +.+-+.-+++.....+.. .-.+.+...+..|
T Consensus 112 ~A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~ 187 (480)
T PHA03100 112 YAISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG 187 (480)
T ss_pred HHHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence 3332 4454443 33344455443221 1223445555566 666666666655433211 1122344445556
Q ss_pred CHHHHHHHHhhCC
Q 010881 169 QISIARQMFDKMP 181 (498)
Q Consensus 169 ~~~~A~~~~~~~~ 181 (498)
+.+-+.-+++.-.
T Consensus 188 ~~~iv~~Ll~~ga 200 (480)
T PHA03100 188 NIDVIKFLLDNGA 200 (480)
T ss_pred CHHHHHHHHHcCC
Confidence 6666666665543
No 458
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.68 E-value=2.7e+02 Score=24.34 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=33.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 010881 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371 (498)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 371 (498)
++.++...|+...|+.+++...- . ..+......++.. ...+.+.+|..+-+...-.-....+..+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p-----~---------l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l 178 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP-----P---------LSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQL 178 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC-----C---------CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHH
Confidence 55555556666666666655311 1 0112222222333 4456666666666655211123455555
Q ss_pred HHHHHh
Q 010881 372 LNACRV 377 (498)
Q Consensus 372 ~~~~~~ 377 (498)
+..+..
T Consensus 179 ~~~~~~ 184 (226)
T PF13934_consen 179 LEHCLE 184 (226)
T ss_pred HHHHHH
Confidence 555543
No 459
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.47 E-value=2.4e+02 Score=23.70 Aligned_cols=116 Identities=8% Similarity=-0.004 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHH----HHHHHHHhC----------------CCchHHHHHHHH
Q 010881 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWN----TMIRGFAEK----------------NEPIKAFALYKQ 78 (498)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~----~li~~~~~~----------------~~~~~A~~~~~~ 78 (498)
+.+..+..+|...+..++..-+.+++.+. .....+++ .++..+.+- --.+.|+.+|+.
T Consensus 15 fyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~ 94 (200)
T cd00280 15 FYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLES 94 (200)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHH
Q ss_pred hHHCCCCC--CcchHHHHHHH-----HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 79 MLRSDFLP--NNYTFSFILRA-----CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 79 m~~~~~~p--~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+.+.--.| -...-..++.. |.+.|.+++|.+++++..+ .|+......-+....+..+.
T Consensus 95 I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 95 IEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.23 E-value=2.4e+02 Score=28.89 Aligned_cols=68 Identities=7% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHhCCChhhHHHHhhccCCC------ChhhHHHHHHHHHccCCHH------HHHHHHhhCC-CCChhHHHHHHHH
Q 010881 128 GLLHLYATCNCMDPARKLFDMSVNR------DVISWTSLINGYAKSGQIS------IARQMFDKMP-EKNAVSWSAMING 194 (498)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~------~A~~~~~~~~-~~~~~~~~~li~~ 194 (498)
+|+.+|...|++-.+.++++..... -...||..|+.+.+.|.++ .|.+.++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 5667777777777777776654422 1245666666666666543 2333333332 2245555555444
Q ss_pred H
Q 010881 195 Y 195 (498)
Q Consensus 195 ~ 195 (498)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 461
>PRK09857 putative transposase; Provisional
Probab=38.14 E-value=2.3e+02 Score=25.91 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 431 (498)
+..++......++.++-.++++.+.+..|.......+++.-+.+.|.-+++.++.++|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4556655566777777888888887777766667778888898889888899999999888875
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.10 E-value=2.5e+02 Score=29.86 Aligned_cols=130 Identities=11% Similarity=-0.041 Sum_probs=73.2
Q ss_pred HHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHH
Q 010881 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107 (498)
Q Consensus 28 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 107 (498)
..+..+ |+++.|.+....+.. ..+|..|.....++|+.+-|.-.|++... |.-|--.|.-.|+.++-
T Consensus 651 ~LaLe~--gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 651 ELALEC--GNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeehhc--CCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 334455 677777666655544 45688888888888888888888887655 22333335556777776
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCC
Q 010881 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 181 (498)
.++.+.+.... |.... .....-.|+.++-.++++..-..+..-.. -...|.-++|.++.++..
T Consensus 718 ~Km~~iae~r~---D~~~~---~qnalYl~dv~ervkIl~n~g~~~laylt-----a~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 718 SKMMKIAEIRN---DATGQ---FQNALYLGDVKERVKILENGGQLPLAYLT-----AAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHHHhhh---hhHHH---HHHHHHhccHHHHHHHHHhcCcccHHHHH-----HhhcCcHHHHHHHHHhhc
Confidence 66555443321 22111 11111246777777776654332221111 123466677777776654
No 463
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.93 E-value=3.7e+02 Score=25.75 Aligned_cols=57 Identities=2% Similarity=-0.210 Sum_probs=38.5
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 010881 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHA--GIVGALTACA--FLGALDQGRWIHAYVDRN 249 (498)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 249 (498)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555788899999999998876 555544 3444445553 345778888888776654
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.51 E-value=1.5e+02 Score=24.47 Aligned_cols=36 Identities=6% Similarity=-0.112 Sum_probs=16.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269 (498)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (498)
.+.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334445555555555444444444444444444444
No 465
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.05 E-value=3.7e+02 Score=25.41 Aligned_cols=51 Identities=4% Similarity=-0.192 Sum_probs=25.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH----HHhcCCHHHHHHHHhhCC
Q 010881 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDM----YAKCGCIETACSVFDSMP 282 (498)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~ 282 (498)
+-++..-+.+....+.++.+..=..+|.+|--- ..+.+.-++|.+..-+|.
T Consensus 289 kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmi 343 (422)
T KOG2582|consen 289 KDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMI 343 (422)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHh
Confidence 445556666666666655554445555554222 223444455554444443
No 466
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=37.01 E-value=40 Score=25.14 Aligned_cols=57 Identities=4% Similarity=0.070 Sum_probs=34.6
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHH
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 62 (498)
.++++|-.=+......+-.+|+.+++.+-+. .++-=++++.+|.-.|+..|+.++..
T Consensus 56 dFR~LWI~RINAA~R~~GlsYS~fi~gLkkA---~I~inRKvLadlAi~d~~aF~~lv~~ 112 (118)
T COG0292 56 DFRKLWIARINAAARENGLSYSRFINGLKKA---GIEIDRKVLADLAINDPAAFAALVEK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHc---CchhhHHHHHHHHhcCHHHHHHHHHH
Confidence 3455555555555556666667777666664 35555666666666666666666543
No 467
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.88 E-value=37 Score=31.27 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=81.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH
Q 010881 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDN-YVLGALLNA 374 (498)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~ 374 (498)
...|.++.|++.|...+..+ ++....|..-..++.+.++...|++-+... .+.||. ..|-.--.+
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-------------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-------------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred hcCcchhhhhcccccccccC-------------CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 34677888888888877642 335667777788889999999999888877 566653 334333445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
....|++++|...+..+.+++.+.. .-..+-...-+.+..++-...+++.++
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHHHH
Confidence 5678999999999999999887653 334455555556666665555555544
No 468
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.80 E-value=3.5e+02 Score=25.14 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--
Q 010881 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRV-- 377 (498)
Q Consensus 302 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~-- 377 (498)
.+.-+.++++.++. .|+ +......++..+.+..+.++..+-++++ ...| +...|...+.....
T Consensus 47 ~E~klsilerAL~~--np~-----------~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH--NPD-----------SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 34566778887776 344 5677777888888888888888888887 3334 67777777775544
Q ss_pred -cCCHHHHHHHHHHHHhc------CC-----CCc-------hHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 378 -HGDVDLGKETVESLVER------SL-----DHE-------GVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 378 -~g~~~~A~~~~~~~~~~------~~-----~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.-.++....+|.+.++. +. +.+ .++..+...+..+|-.+.|..+++.+.+.++
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 23566777777766641 10 011 2233555667778888888888888887655
No 469
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.77 E-value=1.2e+02 Score=21.72 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhc
Q 010881 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCL 48 (498)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 48 (498)
++++......|+..|+.++..++....-+ =.++...++++.|
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~n--VsP~AI~qmLK~m 69 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLN--VSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcC--CCHHHHHHHHHHH
No 470
>PRK14700 recombination factor protein RarA; Provisional
Probab=36.70 E-value=3.4e+02 Score=24.91 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHh---CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881 185 AVSWSAMINGYVQ---VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234 (498)
Q Consensus 185 ~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 234 (498)
...+..+++++.+ -.|++.|+-++.+|.+.|-.|....-..++-++-..|
T Consensus 123 gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 123 GKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred cchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3344456677655 4789999999999999998888777777777766665
No 471
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.60 E-value=6.5e+02 Score=28.34 Aligned_cols=163 Identities=12% Similarity=-0.061 Sum_probs=101.9
Q ss_pred HhccCChHHHHH------HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHH
Q 010881 230 CAFLGALDQGRW------IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----------RDVFAYTSL 292 (498)
Q Consensus 230 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 292 (498)
+...|.+.++.. ++......-.+.....|..+...+-+.|+.++|...-.+..- .+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344455555555 444322222255567788888889999999999987665431 134456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-CC--CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CC
Q 010881 293 ISGLANHDQSASAIELFMRMQLE-GV--VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--------PI 361 (498)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~-~~--~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~ 361 (498)
.-.....++...|+..+.+.... ++ .|+ -+|...+++.+-..+...+.++.|.++++.+ +-
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~--------hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGED--------HPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCC--------CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 65566666777777777666543 11 122 1334555566655666678888898888876 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch
Q 010881 362 --EPDNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEG 400 (498)
Q Consensus 362 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 400 (498)
-++..++..+.......+++..|....+.... ++++++.
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsr 1139 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSR 1139 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCccc
Confidence 13566777787778778888877776655442 5566543
No 472
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.55 E-value=4.8e+02 Score=26.66 Aligned_cols=63 Identities=6% Similarity=-0.033 Sum_probs=36.8
Q ss_pred CChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCC-cchHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 010881 18 WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84 (498)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 84 (498)
+.+..+..|+...... +.+.-.++++.+.. . ...+..++++....|-.....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~~---~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRTL---SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHhC---CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 4555666666666665 45555556655544 3 45666777777777666555555555544333
No 473
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.37 E-value=1.2e+02 Score=27.12 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
+=.++.+.++++.|....++.+..+|.++.-..--+-+|.+.|-+.-|++-+....+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 334667777888888888888888887776666677777777777777777766544
No 474
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=36.00 E-value=1.2e+02 Score=21.34 Aligned_cols=85 Identities=16% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc--hHHHHHHHHHccCCc
Q 010881 27 IGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY--TFSFILRACADTSCL 104 (498)
Q Consensus 27 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~ 104 (498)
+...++. |+++-...+++.-...+. -+..+...+..|+ .++++.+.+.|..|+.. .-.+.+...+..|+.
T Consensus 1 L~~A~~~--~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 72 (89)
T PF12796_consen 1 LHIAAQN--GNLEILKFLLEKGADINL--GNTALHYAAENGN----LEIVKLLLENGADINSQDKNGNTALHYAAENGNL 72 (89)
T ss_dssp HHHHHHT--TTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTT----HHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred CHHHHHc--CCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCC----HHHHHHHHHhcccccccCCCCCCHHHHHHHcCCH
Q ss_pred HHHHHHHHHHHHhCCCCch
Q 010881 105 FVGLICHAQVIRLGWESYD 123 (498)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~ 123 (498)
+ +.+.+.+.|..++.
T Consensus 73 ~----~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 73 E----IVKLLLEHGADVNI 87 (89)
T ss_dssp H----HHHHHHHTTT-TTS
T ss_pred H----HHHHHHHcCCCCCC
No 475
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=35.79 E-value=1.6e+02 Score=21.07 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=13.9
Q ss_pred CChhHHHHHhhhcCC-CCcchHHHHHHHHHhCCC
Q 010881 36 GDLSHGYRLFVCLQY-RTTFIWNTMIRGFAEKNE 68 (498)
Q Consensus 36 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~ 68 (498)
|+.+.|..+++.+.+ ....-|..++.++-..|.
T Consensus 48 g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~ 81 (88)
T cd08812 48 GNIAAAEELLDRLERCDKPGWFQAFLDALRRTGN 81 (88)
T ss_pred ChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCC
Confidence 444444444444443 333344444444444433
No 476
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.76 E-value=1e+02 Score=22.27 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=17.2
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCC
Q 010881 168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVD 199 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 199 (498)
.+.+.+.++++.++..+..+|..+..++-..+
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 34455555555555555555555555554433
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.61 E-value=99 Score=20.72 Aligned_cols=31 Identities=10% Similarity=-0.093 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 010881 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNG 250 (498)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (498)
...++.++..++.....+++...+..+.+.|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444444444444444444444444444
No 478
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.42 E-value=2.2e+02 Score=26.02 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 010881 363 PDNYVLGALLNACRVHGDVDLGK 385 (498)
Q Consensus 363 p~~~~~~~l~~~~~~~g~~~~A~ 385 (498)
-|+..|..+..||.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 45556666666666666554444
No 479
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.13 E-value=6.1e+02 Score=27.44 Aligned_cols=143 Identities=8% Similarity=-0.000 Sum_probs=73.5
Q ss_pred CchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhh
Q 010881 68 EPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD 147 (498)
Q Consensus 68 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 147 (498)
..++...++.+-. -|..|+..|...|+.++|++++.+..+..-..|...- ..++...++++
T Consensus 493 ~vee~e~~L~k~~---------~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~----------~~~e~ii~YL~ 553 (877)
T KOG2063|consen 493 DVEEIETVLKKSK---------KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL----------DGLEKIIEYLK 553 (877)
T ss_pred chHHHHHHHHhcc---------cHHHHHHHHHhccchHHHHHHHHHHhccccccccchh----------hhHHHHHHHHH
Confidence 4455555554432 3889999999999999999999999873210111110 11122333333
Q ss_pred ccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010881 148 MSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225 (498)
Q Consensus 148 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 225 (498)
....++....-... -+.-..+.+...++|..-... ....-. .+-.|+.....+-+..+++.+....-.++..-.+.
T Consensus 554 ~l~~~~~~Li~~y~-~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ 631 (877)
T KOG2063|consen 554 KLGAENLDLILEYA-DWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTV 631 (877)
T ss_pred HhcccchhHHHHHh-hhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHH
Confidence 33333221100000 011234455556666551110 111111 22345566677777888888776555556666666
Q ss_pred HHHHHh
Q 010881 226 ALTACA 231 (498)
Q Consensus 226 ll~~~~ 231 (498)
++..|+
T Consensus 632 ll~ly~ 637 (877)
T KOG2063|consen 632 LLKLYL 637 (877)
T ss_pred HHHHHH
Confidence 665554
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.81 E-value=2e+02 Score=23.78 Aligned_cols=58 Identities=5% Similarity=-0.104 Sum_probs=29.0
Q ss_pred HCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 81 RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 81 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+.|++++..-. .++..+....+.-.|.++++.+.+.++..+..|..--+..+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34554433332 33333333444455666666666666555555544455555555544
No 481
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.03 E-value=4.5e+02 Score=25.53 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHc---CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010881 202 KEALEHFNYMQLC---GF-RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277 (498)
Q Consensus 202 ~~a~~~~~~m~~~---g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 277 (498)
++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+.. ...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHH
Confidence 4444455444321 33 44444444444432 677877777777665432122222 22222
Q ss_pred HhhC---CCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCC
Q 010881 278 FDSM---PNRDVFAYTSLISGLAN---HDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 278 ~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
+... ..++...+..++.++.+ .++.+.|+.++.+|.+.|..|.
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHH
Confidence 2211 11222334445555554 4789999999999999876554
No 482
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.70 E-value=3.8e+02 Score=24.64 Aligned_cols=110 Identities=8% Similarity=-0.038 Sum_probs=0.0
Q ss_pred chHhHHHHHHHHhCC----CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-CCCcchHHHHHHHHHhCCCchHHHHHH
Q 010881 2 KQIKQIQSHLTVSGT----LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YRTTFIWNTMIRGFAEKNEPIKAFALY 76 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~----~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~ 76 (498)
+.+++.+......+. ..++..-..++....+. |+.+.-..+++... .++...-..++.+++...+.+...+++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~--g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRN--GDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHH--hhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Q ss_pred HHhHHCCCCCCcchHHHHHHHH-HccCCcHHHHHHHHH
Q 010881 77 KQMLRSDFLPNNYTFSFILRAC-ADTSCLFVGLICHAQ 113 (498)
Q Consensus 77 ~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 113 (498)
+.....+..++......+.... ...-..+.+.+++..
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 483
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.49 E-value=4.5e+02 Score=25.35 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=40.6
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhhHHHHhhccCCCChh--hHHHHHHHHHccCCHHHHH
Q 010881 99 ADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCMDPARKLFDMSVNRDVI--SWTSLINGYAKSGQISIAR 174 (498)
Q Consensus 99 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~ 174 (498)
+..|+.+.+ +.+++.|..++... ..+.+...+..|+.+-+.-+++....++.. .....+...+..|+.+.+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 445665444 44445666555432 233445556677777666666655443221 1122344455667777666
Q ss_pred HHHhhC
Q 010881 175 QMFDKM 180 (498)
Q Consensus 175 ~~~~~~ 180 (498)
.+++.-
T Consensus 86 ~Ll~~~ 91 (413)
T PHA02875 86 ELLDLG 91 (413)
T ss_pred HHHHcC
Confidence 666543
No 484
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.22 E-value=5.2e+02 Score=26.01 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010881 258 GTAIIDMYAKCGCIETACSVFDSMPNR--DVFA---YTSLISGLANHDQSASAIELFMRMQLEGVVP 319 (498)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 319 (498)
...++.-|.+.+++++|..++..|.=. .... .+.+.+.+.+..-.++....++.+...=..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap 477 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAP 477 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCC
Confidence 345778899999999999999998732 2233 3334445555554555556666665543333
No 485
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.03 E-value=74 Score=28.90 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=45.2
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
.+.|+.++|..+|+.. .+.| ++..+..+.......+++-+|-.+|-+++...|.+..+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4678999999999887 5556 4555555555556667888999999999999988775443
No 486
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.98 E-value=4.5e+02 Score=25.21 Aligned_cols=53 Identities=8% Similarity=-0.079 Sum_probs=32.3
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHh--CCChhhHHHHhhccC
Q 010881 97 ACADTSCLFVGLICHAQVIRLGWESYDF--VLNGLLHLYAT--CNCMDPARKLFDMSV 150 (498)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~g~~~~a~~~~~~~~ 150 (498)
.+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345778888888888888876 444443 34444444432 445566666666544
No 487
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.70 E-value=1.2e+02 Score=29.20 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=28.5
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 360 PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 360 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
.++|. ..++..-+..+.+.+++..|..+.+++++++|...
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 55554 33566677788999999999999999999998764
No 488
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.26 E-value=1.3e+02 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=12.9
Q ss_pred CCchHHHHHHHHhHhcCCcchHHHHHH
Q 010881 397 DHEGVHVLLSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 397 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (498)
-++..+..|+-.|++.|+-+.|.+-|+
T Consensus 70 vpPG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 70 VPPGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred CCCcHHHHHHHHHhhcCChHHHHHHHH
Confidence 344444445555555555554444443
No 489
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=4.8e+02 Score=25.13 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHhc--CCHHHHHHHHhhCCCC------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010881 251 IELDIILGTAIIDMYAKC--GCIETACSVFDSMPNR------------DVFAYTSLISGLANHDQSASAIELFMRMQLEG 316 (498)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 316 (498)
+++....|-.++-.+.-. .++.+|..+-+....+ ...+|.-+-.+|-..|+...-..++.......
T Consensus 120 ~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 120 LPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q ss_pred CCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHH
Q 010881 317 VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHG-------DVDLGKETVE 389 (498)
Q Consensus 317 ~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~ 389 (498)
---+ .-..-....|.|++.|...+.++.|..+..+.. .|...+-+-..+...-.| ++..|.+.+-
T Consensus 200 tLrh-------d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~ 271 (493)
T KOG2581|consen 200 TLRH-------DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFL 271 (493)
T ss_pred hhcC-------cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHH
Q ss_pred HHHhcCCCCchH
Q 010881 390 SLVERSLDHEGV 401 (498)
Q Consensus 390 ~~~~~~~~~~~~ 401 (498)
.++...|++...
T Consensus 272 qa~rkapq~~al 283 (493)
T KOG2581|consen 272 QALRKAPQHAAL 283 (493)
T ss_pred HHHHhCcchhhh
No 490
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.68 E-value=50 Score=20.25 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCcccC
Q 010881 464 LLFGIDKHLKSLCFFDD 480 (498)
Q Consensus 464 ~l~~~~~~~~~~g~~~~ 480 (498)
.-+++.+..++.||.|+
T Consensus 30 tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 30 TRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 34455788889999996
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.64 E-value=2.7e+02 Score=24.72 Aligned_cols=74 Identities=11% Similarity=-0.038 Sum_probs=41.6
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHhHhcCCcchHHHHHH
Q 010881 351 AAKKVVREMPI-EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD------HEGVHVLLSNIYASTEQWNGVEKVRR 423 (498)
Q Consensus 351 ~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 423 (498)
.|.+.|...+. +--...-..+...|...|++++|.++|+.+...-.. ...+...+..++.+.|+.++...+-=
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44445544421 112223334566778888888888888887543221 12234456666777777777666543
Q ss_pred h
Q 010881 424 G 424 (498)
Q Consensus 424 ~ 424 (498)
+
T Consensus 243 e 243 (247)
T PF11817_consen 243 E 243 (247)
T ss_pred H
Confidence 3
No 492
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.27 E-value=5.4e+02 Score=25.61 Aligned_cols=26 Identities=8% Similarity=-0.132 Sum_probs=17.8
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCCHHH
Q 010881 197 QVDLFKEALEHFNYMQLCGFRPNHAG 222 (498)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~g~~p~~~~ 222 (498)
+.++++.|+.++.+|...|..|....
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 45777777777777777776665443
No 493
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.67 E-value=3.7e+02 Score=23.48 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C--CCCC
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P--IEPD 364 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p~ 364 (498)
-.|.|+--|.-...+.+|-..|.. +.|+.|. .+.++...-..-|......|+.++|.+...++ + +.-|
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~-------~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPP-------SIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCc-------cCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 345555555555555555555544 3445543 12222233344566778899999999998887 1 2233
Q ss_pred HHHHHHH--HH--HHHhcCCHHHHHHHHHHHHh
Q 010881 365 NYVLGAL--LN--ACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 365 ~~~~~~l--~~--~~~~~g~~~~A~~~~~~~~~ 393 (498)
...+-.| .. -..+.|..++|+++.+.-+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 2222222 11 24677778888877765443
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.51 E-value=2.7e+02 Score=22.23 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=37.4
Q ss_pred hHHCCCCCCcchHHHHHHHHHcc-CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 79 MLRSDFLPNNYTFSFILRACADT-SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+.+.|++++..- ..++..+... +..-.|.++++.+.+.++..+..|..--+..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445566654443 2344444443 45667888888888887776766665666667666654
No 495
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.16 E-value=7.7e+02 Score=27.06 Aligned_cols=245 Identities=10% Similarity=-0.001 Sum_probs=138.1
Q ss_pred CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHH
Q 010881 17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96 (498)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 96 (498)
.+++.+-..-+..+.+. ++.+....+...+..++...=...+.++.+.+........+..+.+. +|..+-...+.
T Consensus 632 D~d~~VR~~Av~~L~~~--~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~ 706 (897)
T PRK13800 632 DPDPGVRRTAVAVLTET--TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALD 706 (897)
T ss_pred CCCHHHHHHHHHHHhhh--cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHH
Confidence 56776667777777776 65443344444455555555455555555443322222333344432 45555555666
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHH-HHH
Q 010881 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI-ARQ 175 (498)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~ 175 (498)
++...+.-+ ...+. .+++ .+|..+....+.++.+.+..+. +......++...-.....++...+..+. +..
T Consensus 707 aL~~~~~~~-~~~l~-~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~ 778 (897)
T PRK13800 707 VLRALRAGD-AALFA-AALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGD 778 (897)
T ss_pred HHHhhccCC-HHHHH-HHhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHH
Confidence 665443221 12222 2222 4566666677777776655432 3333456677777777777777765443 223
Q ss_pred -HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 010881 176 -MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD 254 (498)
Q Consensus 176 -~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (498)
+..-+..++...-...+.++.+.|..+.+...+..+++ .++...-...+.++...+..+ +...+..+.+ .++
T Consensus 779 ~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~-a~~~L~~~L~---D~~ 851 (897)
T PRK13800 779 AVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADV-AVPALVEALT---DPH 851 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccc-hHHHHHHHhc---CCC
Confidence 33444567888888889999999887666555555554 355555566777777766543 4444444442 567
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
..+-...+.++.+.+.-..+...+..+
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 777777777777753233444444433
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.93 E-value=1.3e+02 Score=22.64 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=24.6
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 234 (498)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444555566666666666665556555555555554444
No 497
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.80 E-value=1.1e+02 Score=17.15 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=12.0
Q ss_pred chHHHHHHHHhHHCCCCCCcchHH
Q 010881 69 PIKAFALYKQMLRSDFLPNNYTFS 92 (498)
Q Consensus 69 ~~~A~~~~~~m~~~~~~p~~~~~~ 92 (498)
++.|..+|+.... +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4556666666655 335555543
No 498
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.77 E-value=67 Score=22.47 Aligned_cols=25 Identities=24% Similarity=0.038 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCc
Q 010881 458 MEEIVLLLFGIDKHLKSLCFFDDGN 482 (498)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~g~~~~~~ 482 (498)
.-++.+.+++....++..|+.||.-
T Consensus 7 li~il~~ie~~inELk~dG~ePDiv 31 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIV 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 3567788888889999999999964
No 499
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.70 E-value=3.9e+02 Score=23.56 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCH
Q 010881 172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH 220 (498)
Q Consensus 172 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 220 (498)
.+..+|+-..+|.+.....++..+ ..+++++|.+.+.++-+.|+.|..
T Consensus 226 n~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 226 NQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred chhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 345667777777777777777655 456799999999999998887754
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.46 E-value=1.3e+02 Score=22.66 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT 101 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 101 (498)
+..+...+..-.|.++++.+.+.+..++..|.-..|..+...
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~ 48 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEA 48 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Confidence 333444444445555555555544333444433333333333
Done!