Query 010881
Match_columns 498
No_of_seqs 564 out of 3388
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.2E-37 7.4E-42 314.2 35.2 408 2-429 101-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-35 5.5E-40 300.4 30.2 393 18-429 82-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-27 3.9E-32 229.2 38.9 369 27-414 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.7E-27 2E-31 224.3 36.4 351 60-428 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 8.3E-29 2.8E-33 241.5 20.0 206 71-298 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 7.9E-28 2.7E-32 234.6 21.3 181 186-378 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-24 4.3E-29 216.0 29.0 390 20-429 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 6.6E-23 2.2E-27 200.1 32.6 339 52-424 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.2E-28 206.7 28.9 390 2-405 23-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 3.5E-22 1.2E-26 199.6 33.1 386 20-429 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 8.3E-22 2.8E-26 192.3 31.7 362 18-417 24-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.5E-20 8.6E-25 186.1 27.6 385 2-403 42-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.4E-19 8.2E-24 169.0 32.7 295 89-428 4-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.4E-24 170.2 29.4 329 52-412 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 7.1E-19 2.4E-23 163.8 27.1 298 84-416 18-322 (330)
16 2xm6_A Protein corresponding t 99.8 1.3E-17 4.4E-22 164.4 35.6 363 19-410 38-451 (490)
17 1fch_A Peroxisomal targeting s 99.8 8.4E-19 2.9E-23 166.1 23.2 277 135-426 37-357 (368)
18 3hym_B Cell division cycle pro 99.8 1.3E-17 4.5E-22 155.1 30.4 281 50-381 19-321 (330)
19 2xm6_A Protein corresponding t 99.8 7.8E-17 2.7E-21 158.7 37.0 360 42-430 27-434 (490)
20 1b89_A Protein (clathrin heavy 99.8 7.8E-19 2.7E-23 163.5 20.6 296 22-359 8-308 (449)
21 2ooe_A Cleavage stimulation fa 99.8 1E-16 3.5E-21 159.5 36.4 393 17-428 10-492 (530)
22 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.8E-22 151.2 26.5 265 133-421 9-287 (291)
23 4eqf_A PEX5-related protein; a 99.8 3.1E-18 1.1E-22 162.1 20.1 257 153-424 64-352 (365)
24 3mkr_A Coatomer subunit epsilo 99.8 2.1E-16 7.2E-21 143.9 30.5 250 163-429 8-265 (291)
25 4g1t_A Interferon-induced prot 99.8 7.9E-17 2.7E-21 158.0 28.1 366 52-438 50-469 (472)
26 1xi4_A Clathrin heavy chain; a 99.8 2.2E-15 7.6E-20 156.2 38.7 349 19-423 984-1340(1630)
27 1fch_A Peroxisomal targeting s 99.8 1E-17 3.5E-22 158.6 20.2 284 54-358 65-355 (368)
28 1b89_A Protein (clathrin heavy 99.8 3.5E-17 1.2E-21 152.5 21.8 276 2-309 20-305 (449)
29 3cv0_A Peroxisome targeting si 99.8 3.7E-17 1.3E-21 151.8 21.5 257 156-427 23-314 (327)
30 4eqf_A PEX5-related protein; a 99.8 2.3E-17 8E-22 156.0 19.9 233 184-429 64-311 (365)
31 2ooe_A Cleavage stimulation fa 99.8 2E-15 6.7E-20 150.3 32.7 361 50-429 10-455 (530)
32 1xi4_A Clathrin heavy chain; a 99.7 3.2E-14 1.1E-18 147.7 37.8 362 4-422 1004-1378(1630)
33 3cv0_A Peroxisome targeting si 99.7 2.2E-16 7.5E-21 146.6 18.1 264 87-395 20-316 (327)
34 4g1t_A Interferon-induced prot 99.7 3.1E-15 1E-19 146.7 26.9 362 16-406 47-471 (472)
35 3uq3_A Heat shock protein STI1 99.7 2E-15 6.9E-20 134.9 20.3 223 185-429 5-237 (258)
36 2pl2_A Hypothetical conserved 99.7 1.4E-15 4.8E-20 132.3 18.5 208 184-426 4-212 (217)
37 3spa_A Mtrpol, DNA-directed RN 99.7 3E-17 1E-21 165.0 8.8 147 154-300 127-286 (1134)
38 3spa_A Mtrpol, DNA-directed RN 99.7 3E-17 1E-21 165.0 6.8 147 20-168 127-286 (1134)
39 3u4t_A TPR repeat-containing p 99.7 2.2E-14 7.4E-19 129.4 23.9 244 156-413 5-269 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-14 5.6E-19 130.4 19.1 237 167-422 18-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.6 2.8E-14 9.6E-19 138.5 20.7 341 26-397 9-390 (452)
42 3uq3_A Heat shock protein STI1 99.6 6.2E-14 2.1E-18 125.1 21.4 229 157-407 8-255 (258)
43 3e4b_A ALGK; tetratricopeptide 99.6 4.2E-14 1.4E-18 137.2 21.2 323 3-359 21-384 (452)
44 1ouv_A Conserved hypothetical 99.6 5.3E-13 1.8E-17 120.5 26.9 223 184-430 5-253 (273)
45 2ho1_A Type 4 fimbrial biogene 99.6 3.9E-13 1.3E-17 119.6 25.6 203 185-402 37-246 (252)
46 1ouv_A Conserved hypothetical 99.6 3.2E-13 1.1E-17 121.9 24.5 225 153-399 5-256 (273)
47 2q7f_A YRRB protein; TPR, prot 99.6 3.6E-14 1.2E-18 125.5 17.8 211 184-409 22-237 (243)
48 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-13 3.9E-18 123.2 21.0 198 220-429 37-239 (252)
49 2h6f_A Protein farnesyltransfe 99.6 6.4E-14 2.2E-18 131.9 18.7 228 184-427 96-347 (382)
50 2vq2_A PILW, putative fimbrial 99.6 2.5E-13 8.6E-18 118.4 21.3 199 184-426 7-209 (225)
51 2vq2_A PILW, putative fimbrial 99.6 8.6E-13 2.9E-17 115.0 24.5 208 153-404 7-221 (225)
52 2h6f_A Protein farnesyltransfe 99.6 1.6E-13 5.5E-18 129.1 20.5 244 154-412 97-366 (382)
53 3sf4_A G-protein-signaling mod 99.6 1.2E-13 4.2E-18 132.1 19.2 295 91-417 12-365 (406)
54 3u4t_A TPR repeat-containing p 99.6 1.6E-13 5.3E-18 123.8 18.6 230 186-429 4-251 (272)
55 2pl2_A Hypothetical conserved 99.6 1.9E-13 6.5E-18 118.7 18.3 194 151-359 2-211 (217)
56 2q7f_A YRRB protein; TPR, prot 99.6 9.8E-14 3.4E-18 122.7 16.8 198 218-429 21-223 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.9E-13 1E-17 122.1 18.9 243 65-356 17-269 (275)
58 4abn_A Tetratricopeptide repea 99.5 1.7E-13 5.9E-18 133.8 17.9 211 201-426 84-319 (474)
59 4a1s_A PINS, partner of inscut 99.5 8.8E-14 3E-18 133.6 13.5 198 223-428 129-372 (411)
60 3vtx_A MAMA; tetratricopeptide 99.5 7.7E-13 2.6E-17 111.6 17.3 163 254-429 4-171 (184)
61 3ro2_A PINS homolog, G-protein 99.5 2.4E-13 8.3E-18 126.3 13.6 235 187-428 45-332 (338)
62 3sf4_A G-protein-signaling mod 99.5 4E-13 1.4E-17 128.5 15.3 265 157-428 12-336 (406)
63 4a1s_A PINS, partner of inscut 99.5 9.8E-13 3.4E-17 126.2 18.1 274 93-397 53-375 (411)
64 4e6h_A MRNA 3'-END-processing 99.5 9.9E-11 3.4E-15 117.6 31.9 403 9-428 56-570 (679)
65 3ro2_A PINS homolog, G-protein 99.5 2.3E-12 7.9E-17 119.5 18.6 271 96-397 13-335 (338)
66 3vtx_A MAMA; tetratricopeptide 99.5 2.8E-12 9.7E-17 108.1 16.7 165 221-399 6-175 (184)
67 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-12 5.6E-17 132.0 16.6 162 253-427 7-173 (723)
68 3ulq_A Response regulator aspa 99.4 3.9E-11 1.3E-15 114.0 24.7 202 186-395 144-369 (383)
69 3nf1_A KLC 1, kinesin light ch 99.4 2.4E-13 8.1E-18 125.0 8.9 231 186-427 28-306 (311)
70 3ulq_A Response regulator aspa 99.4 4E-12 1.4E-16 120.8 16.7 227 190-428 108-368 (383)
71 2ond_A Cleavage stimulation fa 99.4 5.6E-11 1.9E-15 109.1 22.9 213 202-428 33-270 (308)
72 2ond_A Cleavage stimulation fa 99.4 1.6E-10 5.6E-15 106.0 25.5 213 171-399 33-275 (308)
73 3as5_A MAMA; tetratricopeptide 99.4 4E-11 1.4E-15 100.7 19.5 162 255-429 8-174 (186)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.5E-16 113.2 13.9 237 156-397 29-310 (311)
75 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.6E-15 101.4 19.1 175 221-408 8-223 (228)
76 1hz4_A MALT regulatory protein 99.3 1.8E-09 6.1E-14 102.0 28.2 200 188-396 96-324 (373)
77 3q15_A PSP28, response regulat 99.3 1.6E-10 5.5E-15 109.4 20.7 228 191-427 107-364 (378)
78 1hz4_A MALT regulatory protein 99.3 5.5E-09 1.9E-13 98.6 31.2 302 58-397 19-352 (373)
79 4e6h_A MRNA 3'-END-processing 99.3 1.1E-08 3.6E-13 102.9 33.9 381 2-399 83-575 (679)
80 4abn_A Tetratricopeptide repea 99.3 2.1E-11 7.1E-16 119.0 13.7 179 236-429 84-288 (474)
81 3q15_A PSP28, response regulat 99.3 6.5E-10 2.2E-14 105.3 23.5 226 161-394 108-365 (378)
82 4i17_A Hypothetical protein; T 99.2 1.1E-10 3.7E-15 102.0 14.6 163 253-428 5-209 (228)
83 3as5_A MAMA; tetratricopeptide 99.2 1.9E-10 6.6E-15 96.5 15.3 134 254-400 41-179 (186)
84 4gyw_A UDP-N-acetylglucosamine 99.2 1E-10 3.6E-15 118.8 15.2 161 222-396 11-176 (723)
85 4ga2_A E3 SUMO-protein ligase 99.2 5.5E-11 1.9E-15 96.3 9.2 141 261-414 3-149 (150)
86 3edt_B KLC 2, kinesin light ch 99.2 9.3E-11 3.2E-15 105.8 10.8 165 255-427 43-280 (283)
87 1qqe_A Vesicular transport pro 99.2 6E-10 2.1E-14 101.3 15.4 163 256-426 78-267 (292)
88 3edt_B KLC 2, kinesin light ch 99.1 1.4E-09 4.7E-14 98.0 16.9 232 134-394 12-281 (283)
89 2pzi_A Probable serine/threoni 99.1 2.6E-10 8.7E-15 116.4 12.1 169 231-414 402-583 (681)
90 2fo7_A Synthetic consensus TPR 99.1 1.9E-09 6.3E-14 85.0 14.7 130 287-429 2-133 (136)
91 3qky_A Outer membrane assembly 99.1 4.5E-09 1.5E-13 93.8 18.9 191 252-475 12-248 (261)
92 1qqe_A Vesicular transport pro 99.1 2.6E-09 8.8E-14 97.1 17.0 218 169-405 32-280 (292)
93 3mv2_B Coatomer subunit epsilo 99.1 6.9E-09 2.3E-13 92.7 18.5 237 167-429 26-283 (310)
94 3mv2_B Coatomer subunit epsilo 99.1 1.1E-08 3.8E-13 91.4 19.8 181 204-401 85-289 (310)
95 3qky_A Outer membrane assembly 99.1 8.9E-10 3E-14 98.4 12.5 202 184-418 14-251 (261)
96 3gyz_A Chaperone protein IPGC; 99.1 2E-09 6.8E-14 86.7 12.6 102 328-429 30-134 (151)
97 2r5s_A Uncharacterized protein 99.1 3.1E-09 1.1E-13 88.5 13.9 157 257-427 8-172 (176)
98 3rjv_A Putative SEL1 repeat pr 99.0 9.2E-09 3.2E-13 88.5 17.1 172 239-430 5-199 (212)
99 3urz_A Uncharacterized protein 99.0 6.1E-09 2.1E-13 89.4 14.0 179 187-398 6-190 (208)
100 3qou_A Protein YBBN; thioredox 99.0 4.1E-09 1.4E-13 95.4 13.4 159 255-426 117-282 (287)
101 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 80.4 14.3 128 257-397 3-135 (136)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.2E-08 4E-13 88.8 15.5 89 343-431 106-216 (225)
103 2vsy_A XCC0866; transferase, g 99.0 5.3E-09 1.8E-13 104.7 14.7 160 233-406 2-169 (568)
104 2pzi_A Probable serine/threoni 99.0 1.4E-08 4.7E-13 103.7 17.8 189 196-400 402-608 (681)
105 4ga2_A E3 SUMO-protein ligase 99.0 8.6E-10 2.9E-14 89.2 6.5 123 292-427 3-128 (150)
106 4gco_A Protein STI-1; structur 98.9 1.4E-08 4.7E-13 79.2 12.8 109 287-408 14-124 (126)
107 2vsy_A XCC0866; transferase, g 98.9 9.8E-09 3.4E-13 102.8 14.7 147 198-359 2-154 (568)
108 2uy1_A Cleavage stimulation fa 98.9 3E-07 1E-11 89.6 24.7 202 202-427 196-412 (493)
109 2vgx_A Chaperone SYCD; alterna 98.9 1.6E-08 5.4E-13 81.4 11.9 97 332-428 20-118 (148)
110 3qou_A Protein YBBN; thioredox 98.9 9.5E-08 3.2E-12 86.4 18.3 161 219-393 116-283 (287)
111 4gco_A Protein STI-1; structur 98.9 8E-09 2.7E-13 80.5 9.4 97 332-428 12-110 (126)
112 2r5s_A Uncharacterized protein 98.9 4.6E-08 1.6E-12 81.3 14.6 154 226-393 12-172 (176)
113 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-07 4.9E-12 81.9 18.0 198 187-400 6-219 (225)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.7E-07 5.8E-12 80.5 18.1 130 257-399 8-155 (213)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 4.3E-09 1.5E-13 96.4 8.3 164 228-401 44-230 (307)
116 2xcb_A PCRH, regulatory protei 98.9 2.4E-08 8.4E-13 79.7 11.7 98 332-429 17-116 (142)
117 3dra_A Protein farnesyltransfe 98.9 4.7E-07 1.6E-11 81.7 21.1 215 197-427 44-286 (306)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 5.1E-09 1.7E-13 95.9 7.6 224 136-386 4-253 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.7E-08 3E-12 82.3 15.1 127 288-430 8-152 (213)
120 3u3w_A Transcriptional activat 98.8 4.3E-07 1.5E-11 82.4 20.3 160 261-427 81-265 (293)
121 1a17_A Serine/threonine protei 98.8 7.6E-08 2.6E-12 78.8 13.8 128 287-427 14-145 (166)
122 3urz_A Uncharacterized protein 98.8 1.5E-07 5.1E-12 80.6 15.9 158 155-314 5-185 (208)
123 2uy1_A Cleavage stimulation fa 98.8 3.7E-06 1.3E-10 81.9 27.0 346 21-393 16-412 (493)
124 3upv_A Heat shock protein STI1 98.8 2.7E-08 9.3E-13 77.5 9.5 98 332-429 3-102 (126)
125 3rjv_A Putative SEL1 repeat pr 98.8 3.2E-07 1.1E-11 78.8 16.7 170 72-250 5-198 (212)
126 1na0_A Designed protein CTPR3; 98.8 2.3E-07 8E-12 71.5 14.2 115 286-413 9-125 (125)
127 2lni_A Stress-induced-phosphop 98.7 1.2E-07 4.1E-12 74.3 12.3 117 285-414 15-133 (133)
128 2vyi_A SGTA protein; chaperone 98.7 2.4E-07 8.2E-12 72.2 14.0 119 285-416 11-131 (131)
129 1p5q_A FKBP52, FK506-binding p 98.7 7.5E-08 2.6E-12 89.2 12.5 140 285-426 146-292 (336)
130 2fbn_A 70 kDa peptidylprolyl i 98.7 2.1E-08 7.1E-13 85.3 7.9 160 262-429 11-187 (198)
131 2qfc_A PLCR protein; TPR, HTH, 98.7 3.5E-07 1.2E-11 82.9 16.3 163 256-427 76-265 (293)
132 2c2l_A CHIP, carboxy terminus 98.7 4.5E-08 1.5E-12 88.2 10.1 191 221-428 5-199 (281)
133 3u3w_A Transcriptional activat 98.7 3.5E-07 1.2E-11 83.0 16.2 212 6-248 32-265 (293)
134 2vgx_A Chaperone SYCD; alterna 98.7 4E-08 1.4E-12 79.0 8.3 105 285-402 20-126 (148)
135 3gyz_A Chaperone protein IPGC; 98.7 6.9E-08 2.4E-12 77.6 9.6 102 285-399 35-138 (151)
136 2e2e_A Formate-dependent nitri 98.7 1.2E-07 4.1E-12 78.8 11.0 121 296-429 20-145 (177)
137 3dra_A Protein farnesyltransfe 98.7 4.8E-06 1.6E-10 75.1 21.9 223 171-408 50-302 (306)
138 2qfc_A PLCR protein; TPR, HTH, 98.7 1.5E-06 5.2E-11 78.7 18.9 169 55-247 77-264 (293)
139 3gw4_A Uncharacterized protein 98.7 2E-07 6.7E-12 79.3 11.9 155 266-428 3-176 (203)
140 2kck_A TPR repeat; tetratricop 98.6 2.1E-07 7E-12 70.3 10.5 99 332-430 5-108 (112)
141 3sz7_A HSC70 cochaperone (SGT) 98.6 4.1E-07 1.4E-11 74.5 12.7 98 332-429 10-109 (164)
142 1hxi_A PEX5, peroxisome target 98.6 1.2E-07 4E-12 73.3 8.6 96 334-429 18-115 (121)
143 3upv_A Heat shock protein STI1 98.6 4.2E-07 1.4E-11 70.6 11.6 110 287-409 5-122 (126)
144 4f3v_A ESX-1 secretion system 98.6 2.8E-07 9.6E-12 81.2 11.2 183 232-429 18-238 (282)
145 3q49_B STIP1 homology and U bo 98.6 3.2E-07 1.1E-11 72.4 10.7 99 331-429 7-107 (137)
146 2xcb_A PCRH, regulatory protei 98.6 2.8E-07 9.7E-12 73.4 10.3 116 277-405 6-126 (142)
147 3sz7_A HSC70 cochaperone (SGT) 98.6 5.8E-07 2E-11 73.6 12.3 109 285-406 10-120 (164)
148 1elw_A TPR1-domain of HOP; HOP 98.6 1E-06 3.5E-11 67.1 12.9 110 286-408 4-115 (118)
149 4gcn_A Protein STI-1; structur 98.6 2E-07 6.9E-12 72.6 8.7 95 333-427 8-111 (127)
150 2lni_A Stress-induced-phosphop 98.6 4.9E-07 1.7E-11 70.7 11.1 99 330-428 13-113 (133)
151 4f3v_A ESX-1 secretion system 98.6 5E-06 1.7E-10 73.3 18.1 136 257-406 104-248 (282)
152 1wao_1 Serine/threonine protei 98.5 4.2E-07 1.4E-11 88.4 11.8 119 293-424 13-135 (477)
153 1elw_A TPR1-domain of HOP; HOP 98.5 1E-06 3.5E-11 67.0 11.0 98 332-429 3-102 (118)
154 1na0_A Designed protein CTPR3; 98.5 8.8E-07 3E-11 68.2 10.7 96 333-428 9-106 (125)
155 2dba_A Smooth muscle cell asso 98.5 1.2E-06 4.2E-11 69.8 11.9 97 332-428 27-128 (148)
156 2e2e_A Formate-dependent nitri 98.5 2.6E-07 9E-12 76.7 7.9 123 267-402 22-152 (177)
157 3q7a_A Farnesyltransferase alp 98.5 1.6E-05 5.6E-10 72.5 19.9 218 195-428 64-331 (349)
158 2dba_A Smooth muscle cell asso 98.5 2.6E-06 9E-11 67.9 13.4 117 285-411 27-145 (148)
159 3q49_B STIP1 homology and U bo 98.5 1.4E-06 4.7E-11 68.7 11.0 101 284-397 7-109 (137)
160 2hr2_A Hypothetical protein; a 98.5 6.4E-07 2.2E-11 71.3 8.6 96 333-428 11-131 (159)
161 3gw4_A Uncharacterized protein 98.4 1.7E-06 5.7E-11 73.4 11.9 148 167-314 5-175 (203)
162 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.4E-06 4.9E-11 84.2 12.3 141 286-428 268-415 (457)
163 3rkv_A Putative peptidylprolyl 98.4 1.5E-06 5.2E-11 70.8 10.7 96 333-428 11-126 (162)
164 1hxi_A PEX5, peroxisome target 98.4 1.2E-06 4.2E-11 67.4 9.2 99 288-399 19-119 (121)
165 1a17_A Serine/threonine protei 98.4 7.3E-06 2.5E-10 66.7 14.4 127 186-314 14-145 (166)
166 2vyi_A SGTA protein; chaperone 98.4 2.2E-06 7.5E-11 66.5 10.7 97 332-428 11-109 (131)
167 2kck_A TPR repeat; tetratricop 98.4 3.2E-06 1.1E-10 63.5 11.3 102 285-399 5-111 (112)
168 4gcn_A Protein STI-1; structur 98.4 1.3E-06 4.4E-11 68.0 8.7 99 287-398 9-116 (127)
169 2xev_A YBGF; tetratricopeptide 98.4 1.6E-06 5.3E-11 67.5 8.8 93 336-428 5-105 (129)
170 1ihg_A Cyclophilin 40; ppiase 98.4 3.6E-06 1.2E-10 78.8 12.5 132 288-421 225-363 (370)
171 1elr_A TPR2A-domain of HOP; HO 98.3 9.6E-06 3.3E-10 62.8 13.1 111 287-411 5-124 (131)
172 4b4t_Q 26S proteasome regulato 98.3 6.1E-06 2.1E-10 79.3 14.3 161 258-426 58-243 (434)
173 2xev_A YBGF; tetratricopeptide 98.3 7.9E-06 2.7E-10 63.4 12.4 108 289-406 5-117 (129)
174 3rkv_A Putative peptidylprolyl 98.3 2.2E-06 7.6E-11 69.9 9.5 122 288-410 13-143 (162)
175 2l6j_A TPR repeat-containing p 98.3 5.3E-07 1.8E-11 68.0 5.1 94 332-425 3-104 (111)
176 1elr_A TPR2A-domain of HOP; HO 98.3 2.5E-06 8.6E-11 66.2 9.0 96 333-428 4-108 (131)
177 3dss_A Geranylgeranyl transfer 98.3 9.7E-05 3.3E-09 67.0 20.3 218 196-429 40-305 (331)
178 3k9i_A BH0479 protein; putativ 98.3 5.3E-07 1.8E-11 69.0 4.7 84 345-428 2-90 (117)
179 3k9i_A BH0479 protein; putativ 98.3 1.2E-06 4.1E-11 67.0 6.1 94 298-402 2-98 (117)
180 1p5q_A FKBP52, FK506-binding p 98.3 9.9E-06 3.4E-10 74.8 13.5 129 185-314 147-293 (336)
181 1dce_A Protein (RAB geranylger 98.3 5.9E-05 2E-09 74.7 19.7 168 236-417 45-244 (567)
182 2c2l_A CHIP, carboxy terminus 98.3 3.9E-06 1.3E-10 75.4 10.3 98 332-429 3-102 (281)
183 2if4_A ATFKBP42; FKBP-like, al 98.3 1.4E-06 4.9E-11 80.6 7.5 140 287-428 180-328 (338)
184 4b4t_Q 26S proteasome regulato 98.3 2.5E-05 8.5E-10 74.9 16.7 52 162-213 12-83 (434)
185 3ro3_A PINS homolog, G-protein 98.3 2E-06 6.9E-11 69.6 7.4 133 288-427 11-157 (164)
186 3n71_A Histone lysine methyltr 98.2 5.5E-06 1.9E-10 80.1 11.5 127 295-430 318-466 (490)
187 3q7a_A Farnesyltransferase alp 98.2 0.00019 6.4E-09 65.5 20.5 225 168-407 68-345 (349)
188 2fbn_A 70 kDa peptidylprolyl i 98.2 2.5E-05 8.5E-10 65.9 13.5 96 333-428 38-151 (198)
189 1wao_1 Serine/threonine protei 98.2 1.3E-05 4.3E-10 78.0 12.9 84 230-314 16-102 (477)
190 2hr2_A Hypothetical protein; a 98.1 4.8E-06 1.7E-10 66.2 7.2 116 288-405 13-142 (159)
191 3dss_A Geranylgeranyl transfer 98.1 0.00023 7.7E-09 64.6 19.1 243 134-409 40-319 (331)
192 1na3_A Designed protein CTPR2; 98.1 1.8E-05 6.1E-10 56.9 8.6 82 332-413 8-91 (91)
193 3ro3_A PINS homolog, G-protein 98.0 1E-05 3.4E-10 65.4 7.6 133 257-396 11-160 (164)
194 1ihg_A Cyclophilin 40; ppiase 98.0 2.5E-05 8.4E-10 73.1 11.0 96 333-428 223-336 (370)
195 2kat_A Uncharacterized protein 98.0 1.3E-05 4.5E-10 60.8 7.3 78 351-428 3-82 (115)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.5E-05 8.6E-10 75.5 10.9 97 333-429 268-381 (457)
197 3ma5_A Tetratricopeptide repea 98.0 2.9E-05 9.8E-10 57.2 8.3 65 364-428 6-70 (100)
198 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.4E-10 73.5 7.8 97 333-429 179-294 (338)
199 1zu2_A Mitochondrial import re 97.9 8.6E-06 2.9E-10 64.6 3.9 86 344-429 13-121 (158)
200 3n71_A Histone lysine methyltr 97.8 0.00013 4.4E-09 70.5 11.7 116 341-474 317-450 (490)
201 1zu2_A Mitochondrial import re 97.8 2.6E-05 8.8E-10 61.9 5.3 91 297-400 13-126 (158)
202 2kat_A Uncharacterized protein 97.7 8.5E-05 2.9E-09 56.2 7.5 82 304-398 3-86 (115)
203 3bee_A Putative YFRE protein; 97.7 0.00017 5.7E-09 52.0 8.5 68 363-430 4-74 (93)
204 3qwp_A SET and MYND domain-con 97.7 0.00034 1.2E-08 66.5 12.9 117 339-473 293-427 (429)
205 1klx_A Cysteine rich protein B 97.7 0.00044 1.5E-08 54.2 11.2 114 299-431 8-129 (138)
206 2l6j_A TPR repeat-containing p 97.7 0.00013 4.3E-09 54.6 7.7 67 363-429 2-68 (111)
207 2kc7_A BFR218_protein; tetratr 97.5 0.00019 6.6E-09 52.4 6.6 80 339-426 6-88 (99)
208 3ma5_A Tetratricopeptide repea 97.5 0.0002 6.9E-09 52.5 6.5 66 332-397 6-73 (100)
209 1na3_A Designed protein CTPR2; 97.5 0.00029 1E-08 50.2 7.2 65 364-428 8-72 (91)
210 3qww_A SET and MYND domain-con 97.5 0.00027 9.2E-09 67.1 8.4 104 345-466 310-431 (433)
211 1dce_A Protein (RAB geranylger 97.5 0.00094 3.2E-08 66.1 12.6 146 270-428 44-221 (567)
212 1klx_A Cysteine rich protein B 97.4 0.0021 7.2E-08 50.3 11.6 110 199-316 9-127 (138)
213 3qww_A SET and MYND domain-con 97.4 0.00075 2.6E-08 64.0 10.5 96 298-402 310-424 (433)
214 3qwp_A SET and MYND domain-con 97.4 0.00097 3.3E-08 63.4 11.1 103 293-403 294-414 (429)
215 1pc2_A Mitochondria fission pr 97.3 0.0018 6.2E-08 50.7 9.5 105 349-479 14-125 (152)
216 3lvg_A Clathrin heavy chain 1; 97.2 1.4E-05 4.9E-10 74.1 -4.1 239 21-276 55-325 (624)
217 2kc7_A BFR218_protein; tetratr 97.1 0.001 3.5E-08 48.4 6.5 59 371-429 6-65 (99)
218 3ly7_A Transcriptional activat 97.0 0.02 6.9E-07 52.2 14.6 132 284-429 192-340 (372)
219 3ly7_A Transcriptional activat 96.9 0.0039 1.3E-07 56.9 9.5 69 331-399 275-344 (372)
220 3mkq_A Coatomer beta'-subunit; 96.9 0.071 2.4E-06 55.3 20.8 152 98-280 609-761 (814)
221 3u64_A Protein TP_0956; tetrat 96.9 0.004 1.4E-07 54.4 9.0 88 349-436 179-277 (301)
222 3mkq_A Coatomer beta'-subunit; 96.8 0.029 9.9E-07 58.3 16.6 125 164-313 609-734 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.8 0.012 4.1E-07 43.2 9.7 74 332-405 4-86 (104)
224 3bee_A Putative YFRE protein; 96.7 0.009 3.1E-07 42.8 8.3 69 331-399 4-77 (93)
225 1pc2_A Mitochondria fission pr 96.5 0.015 5.2E-07 45.5 8.6 88 303-403 15-109 (152)
226 1wy6_A Hypothetical protein ST 96.3 0.088 3E-06 39.7 11.4 65 367-431 93-157 (172)
227 3mkq_B Coatomer subunit alpha; 96.2 0.089 3E-06 42.3 11.7 100 28-146 13-112 (177)
228 1nzn_A CGI-135 protein, fissio 96.1 0.033 1.1E-06 41.9 8.4 80 348-427 16-102 (126)
229 2v5f_A Prolyl 4-hydroxylase su 96.0 0.027 9.2E-07 41.2 7.5 65 364-428 4-75 (104)
230 4h7y_A Dual specificity protei 95.4 0.069 2.4E-06 41.2 7.9 99 332-430 12-125 (161)
231 4h7y_A Dual specificity protei 95.4 0.13 4.4E-06 39.7 9.2 113 283-405 10-134 (161)
232 3mkq_B Coatomer subunit alpha; 95.3 0.91 3.1E-05 36.4 17.1 45 232-282 17-61 (177)
233 1y8m_A FIS1; mitochondria, unk 95.1 0.54 1.8E-05 36.0 11.9 104 350-479 23-131 (144)
234 1nzn_A CGI-135 protein, fissio 94.9 0.43 1.5E-05 35.8 10.7 90 301-403 16-112 (126)
235 3u64_A Protein TP_0956; tetrat 94.4 0.11 3.8E-06 45.4 7.5 113 36-150 135-267 (301)
236 1wy6_A Hypothetical protein ST 94.4 1.2 4.1E-05 33.7 14.6 136 232-397 19-157 (172)
237 3o48_A Mitochondria fission 1 94.0 0.27 9.4E-06 37.1 7.8 66 362-427 37-106 (134)
238 1qsa_A Protein (soluble lytic 93.9 5.6 0.00019 39.4 25.8 119 300-427 228-347 (618)
239 3lvg_A Clathrin heavy chain 1; 93.2 0.0042 1.5E-07 58.0 -3.7 252 36-307 39-325 (624)
240 4gns_B Protein CSD3, chitin bi 93.2 0.95 3.2E-05 45.8 12.7 55 372-426 344-398 (754)
241 3ffl_A Anaphase-promoting comp 92.5 0.45 1.5E-05 37.5 7.3 92 336-427 23-150 (167)
242 4b4t_P 26S proteasome regulato 91.4 9.8 0.00033 36.0 17.8 94 334-427 138-246 (445)
243 4fhn_B Nucleoporin NUP120; pro 91.2 7.7 0.00026 41.9 17.6 167 252-426 839-1048(1139)
244 2ff4_A Probable regulatory pro 91.1 0.56 1.9E-05 43.6 7.8 68 368-435 174-246 (388)
245 4gns_B Protein CSD3, chitin bi 90.7 0.77 2.6E-05 46.4 8.7 122 58-181 253-398 (754)
246 3lpz_A GET4 (YOR164C homolog); 89.8 11 0.00037 33.8 18.9 25 153-177 135-159 (336)
247 3ltm_A Alpha-REP4; protein eng 89.6 7.8 0.00027 31.9 18.3 124 38-169 18-141 (211)
248 4b4t_P 26S proteasome regulato 89.4 14 0.00049 34.8 16.4 26 187-212 58-83 (445)
249 3txn_A 26S proteasome regulato 89.0 10 0.00035 35.0 14.1 157 256-425 20-207 (394)
250 4ady_A RPN2, 26S proteasome re 88.6 20 0.00068 37.2 17.1 218 92-314 343-588 (963)
251 1y8m_A FIS1; mitochondria, unk 88.5 4 0.00014 31.2 9.1 72 330-401 36-113 (144)
252 2wpv_A GET4, UPF0363 protein Y 88.0 14 0.00047 32.8 18.2 25 122-146 133-157 (312)
253 4fhn_B Nucleoporin NUP120; pro 87.9 4.5 0.00015 43.6 12.8 125 289-430 815-969 (1139)
254 3o48_A Mitochondria fission 1 87.5 2.9 0.0001 31.5 7.7 73 330-402 37-115 (134)
255 1v54_E Cytochrome C oxidase po 87.4 6.1 0.00021 28.1 9.7 67 340-406 16-86 (109)
256 3esl_A Checkpoint serine/threo 87.4 4.6 0.00016 33.0 9.5 80 351-430 62-146 (202)
257 2wpv_A GET4, UPF0363 protein Y 87.3 15 0.00052 32.5 19.5 130 159-299 38-178 (312)
258 3ffl_A Anaphase-promoting comp 87.0 9 0.00031 30.2 10.6 62 55-116 22-91 (167)
259 2ff4_A Probable regulatory pro 86.1 2.9 9.9E-05 38.8 8.9 65 290-367 175-247 (388)
260 3ltj_A Alpharep-4; protein eng 85.8 13 0.00044 30.2 16.9 181 41-233 16-196 (201)
261 3ltm_A Alpha-REP4; protein eng 85.5 14 0.00047 30.3 18.5 62 252-314 123-184 (211)
262 1v54_E Cytochrome C oxidase po 85.5 7.9 0.00027 27.5 9.0 63 200-263 25-87 (109)
263 4ady_A RPN2, 26S proteasome re 85.5 37 0.0013 35.3 19.1 220 126-359 342-586 (963)
264 2uwj_G Type III export protein 84.6 8.6 0.00029 27.1 9.3 58 163-223 48-105 (115)
265 2p58_C Putative type III secre 84.0 9.2 0.00031 27.0 9.2 51 163-215 49-99 (116)
266 4a1g_A Mitotic checkpoint seri 81.7 9.2 0.00031 29.7 8.5 79 350-431 52-133 (152)
267 2y69_E Cytochrome C oxidase su 81.6 15 0.00051 27.7 9.7 59 348-406 68-129 (152)
268 1zbp_A Hypothetical protein VP 80.9 20 0.00068 30.9 11.0 53 229-282 6-58 (273)
269 3ltj_A Alpharep-4; protein eng 80.9 21 0.00071 28.9 17.7 48 122-169 58-105 (201)
270 2y69_E Cytochrome C oxidase su 79.9 17 0.00059 27.4 9.0 62 201-263 69-130 (152)
271 2wvi_A Mitotic checkpoint seri 78.1 13 0.00046 29.2 8.5 78 351-431 48-128 (164)
272 4b4t_R RPN7, 26S proteasome re 77.3 6.2 0.00021 37.2 7.7 94 333-426 131-235 (429)
273 2p58_C Putative type III secre 75.4 19 0.00065 25.5 9.6 79 234-316 21-99 (116)
274 1wdy_A 2-5A-dependent ribonucl 74.9 22 0.00077 30.4 10.5 114 25-150 7-129 (285)
275 2uwj_G Type III export protein 74.3 20 0.00069 25.3 9.6 79 234-316 20-98 (115)
276 1zbp_A Hypothetical protein VP 73.4 7 0.00024 33.6 6.1 61 340-400 4-66 (273)
277 1qsa_A Protein (soluble lytic 72.6 78 0.0027 31.3 34.1 215 199-419 228-470 (618)
278 1wdy_A 2-5A-dependent ribonucl 71.4 29 0.00098 29.7 10.3 208 58-279 7-240 (285)
279 3esl_A Checkpoint serine/threo 70.7 19 0.00067 29.3 7.9 61 101-161 92-153 (202)
280 4aez_C MAD3, mitotic spindle c 64.4 16 0.00055 30.4 6.3 77 351-430 102-181 (223)
281 4a1g_A Mitotic checkpoint seri 61.8 30 0.001 26.8 7.0 56 107-162 84-140 (152)
282 3eu9_A Huntingtin-interacting 58.4 32 0.0011 28.4 7.7 13 36-48 20-32 (240)
283 2qx5_A Nucleoporin NIC96; mRNA 58.3 97 0.0033 30.8 11.8 95 263-364 451-569 (661)
284 3jxi_A Vanilloid receptor-rela 58.0 17 0.00058 30.9 6.0 52 63-114 12-72 (260)
285 2d2s_A Exocyst complex compone 58.0 33 0.0011 28.9 7.4 85 59-146 24-114 (235)
286 4b4t_R RPN7, 26S proteasome re 57.5 35 0.0012 32.0 8.3 96 53-148 131-233 (429)
287 4b4t_S RPN3, 26S proteasome re 56.3 1.3E+02 0.0044 28.8 11.7 59 221-282 232-297 (523)
288 3eu9_A Huntingtin-interacting 54.8 67 0.0023 26.4 9.2 104 6-121 23-135 (240)
289 3ygs_P Procaspase 9; apoptosis 54.6 34 0.0012 24.1 5.9 38 36-73 51-88 (97)
290 2nsz_A Programmed cell death p 54.4 48 0.0016 24.8 7.1 62 158-219 11-77 (129)
291 3kea_A K1L; tropism, ANK repea 54.1 72 0.0025 27.5 9.5 77 134-210 103-183 (285)
292 3bqo_A Telomeric repeat-bindin 52.5 46 0.0016 26.9 6.7 72 349-420 94-172 (211)
293 3b7b_A Euchromatic histone-lys 52.3 66 0.0022 26.5 8.7 112 131-248 116-235 (237)
294 3lpz_A GET4 (YOR164C homolog); 50.0 1.4E+02 0.0048 26.6 28.4 130 159-299 40-180 (336)
295 2qx5_A Nucleoporin NIC96; mRNA 49.7 2.1E+02 0.0071 28.5 18.4 220 191-426 300-565 (661)
296 1oyz_A Hypothetical protein YI 47.4 1.3E+02 0.0045 25.6 22.0 19 252-270 139-157 (280)
297 2ion_A PDCD4, programmed cell 46.2 42 0.0015 26.0 5.7 62 157-218 12-78 (152)
298 1k1a_A B-cell lymphoma 3-encod 45.3 1.1E+02 0.0039 25.0 9.1 20 64-83 17-36 (241)
299 3ljn_A Hypothetical protein; a 44.8 1.6E+02 0.0055 26.2 10.6 19 263-281 178-196 (364)
300 3ljn_A Hypothetical protein; a 44.5 1.1E+02 0.0039 27.3 9.5 96 19-122 17-115 (364)
301 4gq2_M Nucleoporin NUP120; bet 44.2 2.4E+02 0.0084 29.5 12.9 127 160-300 816-950 (950)
302 2d2s_A Exocyst complex compone 44.0 1E+02 0.0035 25.9 8.3 87 191-280 24-116 (235)
303 1k1a_A B-cell lymphoma 3-encod 44.0 1.2E+02 0.0041 24.8 9.1 85 95-180 13-102 (241)
304 2pnn_A Transient receptor pote 43.9 57 0.0019 27.8 7.1 50 64-113 21-79 (273)
305 3kea_A K1L; tropism, ANK repea 41.9 1.1E+02 0.0039 26.2 8.7 111 130-245 66-183 (285)
306 3mv2_A Coatomer subunit alpha; 41.8 1.1E+02 0.0039 27.0 8.3 40 360-399 200-241 (325)
307 2p1h_A APAF-1, apoptotic prote 40.3 79 0.0027 21.8 6.0 61 6-72 26-86 (94)
308 1oyz_A Hypothetical protein YI 39.9 1.7E+02 0.0059 24.8 22.6 17 219-235 205-221 (280)
309 1bpo_A Protein (clathrin); cla 39.3 2.5E+02 0.0085 26.4 12.6 127 247-391 353-482 (494)
310 3aji_A 26S proteasome non-ATPa 39.2 1.5E+02 0.0053 24.0 9.2 112 27-150 10-130 (231)
311 1n11_A Ankyrin; clathrin, BAND 38.9 1.8E+02 0.0061 26.7 10.2 134 6-150 28-170 (437)
312 4gq2_M Nucleoporin NUP120; bet 38.8 3.5E+02 0.012 28.3 13.1 128 129-269 816-950 (950)
313 4b4t_S RPN3, 26S proteasome re 38.1 81 0.0028 30.2 7.3 66 333-398 231-303 (523)
314 2nsz_A Programmed cell death p 37.0 1.1E+02 0.0039 22.7 6.7 67 188-255 10-78 (129)
315 2r9g_A AAA ATPase, central reg 36.6 1.7E+02 0.0059 23.8 9.0 62 188-250 14-83 (204)
316 1ug3_A EIF4GI, eukaryotic prot 36.6 1.4E+02 0.0047 26.8 8.5 25 128-152 16-40 (339)
317 3hra_A Ankyrin repeat family p 35.2 1.3E+02 0.0043 23.8 7.5 180 60-244 9-199 (201)
318 4g8k_A 2-5A-dependent ribonucl 34.4 1.9E+02 0.0065 25.4 9.2 272 24-320 26-328 (337)
319 3jxi_A Vanilloid receptor-rela 34.4 31 0.0011 29.2 3.7 54 95-148 9-71 (260)
320 2fe3_A Peroxide operon regulat 33.1 1.1E+02 0.0037 23.3 6.2 59 211-270 13-71 (145)
321 2xig_A Ferric uptake regulatio 32.8 1.5E+02 0.005 22.7 7.0 59 211-270 18-76 (150)
322 2fu4_A Ferric uptake regulatio 32.7 1.1E+02 0.0037 20.3 5.9 61 78-139 7-68 (83)
323 3bge_A Predicted ATPase; struc 32.5 1.8E+02 0.0062 23.6 7.3 46 189-234 8-56 (201)
324 1n11_A Ankyrin; clathrin, BAND 32.4 3E+02 0.01 25.2 13.6 296 27-358 18-333 (437)
325 2rfa_A Transient receptor pote 31.7 2.1E+02 0.0071 23.2 8.6 24 193-216 159-182 (232)
326 2ion_A PDCD4, programmed cell 30.9 89 0.003 24.1 5.4 68 187-255 11-80 (152)
327 1ya0_A SMG-7 transcript varian 30.5 1.4E+02 0.0047 28.5 7.7 76 336-411 155-232 (497)
328 3aji_A 26S proteasome non-ATPa 29.9 1.9E+02 0.0065 23.4 8.0 85 60-149 10-96 (231)
329 2etb_A Transient receptor pote 29.4 89 0.003 26.2 5.8 26 62-87 8-33 (256)
330 3eiq_C Programmed cell death p 27.8 3.4E+02 0.012 24.5 13.1 26 187-212 56-81 (358)
331 3ctd_A Putative ATPase, AAA fa 27.6 2.5E+02 0.0087 23.0 8.1 65 186-250 33-105 (213)
332 3ygs_P Procaspase 9; apoptosis 27.3 97 0.0033 21.7 4.6 33 139-171 53-85 (97)
333 2fe3_A Peroxide operon regulat 27.1 1.7E+02 0.006 22.1 6.5 60 79-139 13-72 (145)
334 3qye_A TBC1 domain family memb 27.1 3.3E+02 0.011 24.1 10.1 130 68-201 164-310 (331)
335 2w57_A Ferric uptake regulatio 26.5 1.5E+02 0.0053 22.6 6.1 63 77-140 6-69 (150)
336 1wgl_A TOLL-interacting protei 26.4 1E+02 0.0035 19.3 4.0 23 65-87 35-57 (59)
337 4ets_A Ferric uptake regulatio 26.4 1.2E+02 0.004 23.7 5.5 68 202-270 14-84 (162)
338 3d9h_A CDNA FLJ77766, highly s 26.2 1.9E+02 0.0064 24.8 7.4 118 21-150 13-149 (285)
339 3bu8_A Telomeric repeat-bindin 25.5 76 0.0026 26.1 4.1 21 339-359 120-140 (235)
340 4aez_C MAD3, mitotic spindle c 24.6 3E+02 0.01 22.8 8.3 47 302-359 130-176 (223)
341 4ets_A Ferric uptake regulatio 23.5 1.4E+02 0.0049 23.2 5.4 70 70-140 14-86 (162)
342 2xig_A Ferric uptake regulatio 23.2 1.7E+02 0.0059 22.3 5.8 63 77-140 16-78 (150)
343 2pk8_A Uncharacterized protein 22.9 81 0.0028 21.7 3.2 28 456-483 13-40 (103)
344 2o03_A Probable zinc uptake re 22.9 1.3E+02 0.0044 22.3 4.9 34 104-137 26-59 (131)
345 2b7e_A PRE-mRNA processing pro 22.6 85 0.0029 19.7 3.0 30 69-98 2-31 (59)
346 3re2_A Predicted protein; meni 22.5 2.6E+02 0.0088 25.2 7.1 44 384-427 276-324 (472)
347 1bd8_A P19INK4D CDK4/6 inhibit 22.5 1.2E+02 0.0042 22.7 5.0 12 36-47 13-24 (156)
348 2fu4_A Ferric uptake regulatio 22.4 1.7E+02 0.0059 19.2 6.5 59 210-269 7-66 (83)
349 3mwm_A ZUR, putative metal upt 22.4 1.2E+02 0.0039 22.9 4.6 43 96-138 21-63 (139)
350 1ug3_A EIF4GI, eukaryotic prot 22.3 4.1E+02 0.014 23.6 10.2 63 157-219 14-80 (339)
351 1mzb_A Ferric uptake regulatio 21.9 2.4E+02 0.0083 20.9 6.3 60 79-139 9-69 (136)
352 2o03_A Probable zinc uptake re 21.6 1.4E+02 0.0047 22.2 4.8 43 191-233 16-58 (131)
353 2zu6_B Programmed cell death p 21.6 2E+02 0.0068 25.3 6.5 63 157-219 169-236 (307)
354 2ijq_A Hypothetical protein; s 21.5 2.9E+02 0.01 21.5 7.6 58 335-393 35-103 (161)
355 3bqo_A Telomeric repeat-bindin 21.4 2.4E+02 0.0083 22.9 6.1 43 38-80 94-144 (211)
356 3u84_A Menin; MLL, JUND, ledgf 21.2 2.6E+02 0.0089 25.8 7.0 44 384-427 298-346 (550)
357 2cos_A Serine/threonine protei 20.9 1.1E+02 0.0037 18.7 3.1 41 5-52 10-52 (54)
358 2yru_A Steroid receptor RNA ac 20.6 1.6E+02 0.0056 21.5 4.8 42 207-248 48-89 (118)
359 3mwm_A ZUR, putative metal upt 20.5 1.2E+02 0.0042 22.8 4.4 38 192-229 20-57 (139)
360 1bpo_A Protein (clathrin); cla 20.4 5.4E+02 0.019 24.2 11.3 111 36-148 343-454 (494)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-37 Score=314.16 Aligned_cols=408 Identities=9% Similarity=-0.075 Sum_probs=353.3
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhc--CCCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCL--QYRTTFIWNTMIRGFAEKNEPIKAFALYKQM 79 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 79 (498)
++|.+++..+.+. .|+..++..++.+|.+. |++++|..+|+.+ ..+++.+++.++.+|.+.|++++|+.+|+++
T Consensus 101 ~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 101 KCAAFVGEKVLDI--TGNPNDAFWLAQVYCCT--GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHHHHH--HCCHHHHHHHHHHHHHT--TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred hHHHHHHHHHHhh--CCCchHHHHHHHHHHHc--CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 4577788888754 57888889999999999 9999999999988 4678899999999999999999999999853
Q ss_pred HHC---------------CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHH-----------------
Q 010881 80 LRS---------------DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN----------------- 127 (498)
Q Consensus 80 ~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------- 127 (498)
... +..++..+|+.++.+|.+.|++++|..+|+++.+.++. +...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~ 255 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLV 255 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHH
Confidence 221 22335778999999999999999999999999987643 223222
Q ss_pred ---------------------HHHHHHHhCCChhhHHHHhhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhCCC--
Q 010881 128 ---------------------GLLHLYATCNCMDPARKLFDMSVN--RDVISWTSLINGYAKSGQISIARQMFDKMPE-- 182 (498)
Q Consensus 128 ---------------------~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-- 182 (498)
.++..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (597)
T 2xpi_A 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335 (597)
T ss_dssp HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC
Confidence 225556678899999999999886 7889999999999999999999999998852
Q ss_pred -CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881 183 -KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261 (498)
Q Consensus 183 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (498)
.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+|+.+.+.. +.+..+++.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 367889999999999999999999999998653 5567889999999999999999999999998875 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHH
Q 010881 262 IDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC 338 (498)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~ 338 (498)
+.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+|+++.+. .|+ +..+|+.
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~ 480 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY-----------DPLLLNE 480 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC-----------CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------ChHHHHH
Confidence 9999999999999999998753 47789999999999999999999999999875 232 6889999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 339 LVDLLGRAGMLEAAKKVVREM-------PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.++..++.+|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999988 44777 789999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
.+.|++++|.++++++.+..
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-35 Score=300.40 Aligned_cols=393 Identities=9% Similarity=-0.062 Sum_probs=343.2
Q ss_pred CChhHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHH
Q 010881 18 WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95 (498)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 95 (498)
+++..++.++..|.+. |++++|..+|+++. .|+..++..++.+|.+.|++++|..+|+++.. .+++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--cCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 5778899999999999 99999999999886 57778999999999999999999999999865 467889999999
Q ss_pred HHHHccCCcHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC---ChhhH
Q 010881 96 RACADTSCLFVGLICHAQVIRL---------------GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR---DVISW 157 (498)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 157 (498)
.+|.+.|++++|..+|+++... +.+++..+++.++.+|.+.|++++|.++|+++... +...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 22335789999999999999999999999987632 23333
Q ss_pred HHH--------------------------------------HHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHh
Q 010881 158 TSL--------------------------------------INGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQ 197 (498)
Q Consensus 158 ~~l--------------------------------------i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 197 (498)
..+ +..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 322 4456678999999999999987 789999999999999
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010881 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 277 (498)
.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999875 3477789999999999999999999999998765 67889999999999999999999999
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 010881 278 FDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354 (498)
Q Consensus 278 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 354 (498)
|+++.+ .+..+|+.++.+|.+.|++++|+.+|+++.+. .|+ +..+|..++.+|.+.|++++|.+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQG-----------THLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTT-----------CSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc-----------chHHHHHHHHHHHHcCCHHHHHH
Confidence 998753 46789999999999999999999999999875 232 68899999999999999999999
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-chHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 355 VVREM-PIE-PDNYVLGALLNACRVHGDVDLGKETVESLVER------SLDH-EGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 355 ~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
+|+++ ... .+..+|..++..|.+.|++++|.++|+++++. .|+. ..++..++.+|.+.|++++|.++++++
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99998 333 47899999999999999999999999999987 4443 567899999999999999999999999
Q ss_pred hhCC
Q 010881 426 EDNE 429 (498)
Q Consensus 426 ~~~~ 429 (498)
.+.+
T Consensus 543 ~~~~ 546 (597)
T 2xpi_A 543 LLLS 546 (597)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 8765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-27 Score=229.21 Aligned_cols=369 Identities=13% Similarity=0.048 Sum_probs=308.7
Q ss_pred HHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC
Q 010881 27 IGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC 103 (498)
Q Consensus 27 ~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 103 (498)
...+.+. |++++|.+.++.+. ..+...+..+...+...|++++|...++...+.. +.+..+|..+...+...|+
T Consensus 6 a~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQA--GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3445556 99999999998764 3355677778888889999999999999888742 3467789999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC--CC-ChhhHHHHHHHHHccCCHHHHHHHHhhC
Q 010881 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV--NR-DVISWTSLINGYAKSGQISIARQMFDKM 180 (498)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~ 180 (498)
+++|...++++++..+ .+...+..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999998763 356678889999999999999999998765 33 4566778888899999999999999887
Q ss_pred CC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH
Q 010881 181 PE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL 257 (498)
Q Consensus 181 ~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (498)
.+ | +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+..+.+.. +.+..+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 53 3 56788999999999999999999999998863 3345678888888899999999999999888875 556788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChH
Q 010881 258 GTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ 334 (498)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~ 334 (498)
+..+..+|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|...|+++.+. .|+ +..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~ 306 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPT-----------HAD 306 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTT-----------CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc-----------cHH
Confidence 88999999999999999999988764 35678999999999999999999999999875 233 678
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
++..+...+...|++++|...++++ ...| +..++..+...+...|++++|...++++++..|+.+.++..++.++...
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 8999999999999999999999988 5555 5788899999999999999999999999999999998999998888776
Q ss_pred CC
Q 010881 413 EQ 414 (498)
Q Consensus 413 g~ 414 (498)
|+
T Consensus 387 ~~ 388 (388)
T 1w3b_A 387 QD 388 (388)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.7e-27 Score=224.34 Aligned_cols=351 Identities=11% Similarity=0.009 Sum_probs=308.3
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCc-chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNN-YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (498)
...+.+.|++++|+..++++.+. .|+. ..+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45567889999999999999874 4554 456666677889999999999999999876 4477899999999999999
Q ss_pred hhhHHHHhhccC--CC-ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881 139 MDPARKLFDMSV--NR-DVISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 139 ~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
+++|.+.|+++. .| +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999875 33 566899999999999999999999998763 4 45667888899999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHH
Q 010881 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAY 289 (498)
Q Consensus 213 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 289 (498)
+.. +-+..++..+...+...|++++|...++.+.+.+ +.+...+..+...+...|++++|...|++... .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 863 3356788899999999999999999999999886 66778899999999999999999999987753 367889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHH
Q 010881 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI-EPDNYV 367 (498)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~ 367 (498)
..+...+...|++++|...|+++.+. .|+ +..+|..+..++.+.|++++|...|+++ .. +.+..+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPH-----------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSS-----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence 99999999999999999999999885 344 5788999999999999999999999998 33 347889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+..+...+...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.3e-29 Score=241.51 Aligned_cols=206 Identities=12% Similarity=0.093 Sum_probs=131.6
Q ss_pred HHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhcc
Q 010881 71 KAFALYKQMLRSDFLPNNY-TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS 149 (498)
Q Consensus 71 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (498)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455666777666655443 57888888888999999999999998888888888888888888877654322
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010881 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG 225 (498)
Q Consensus 150 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 225 (498)
.+.++++.|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 11233455555555553 35666677777777777777777777777766666777777777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHh
Q 010881 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP----NRDVFAYTSLISGLAN 298 (498)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~ 298 (498)
+|.+|++.|++++|.++|++|.+.|+.||..+|++|+++|++.|++++|.++|++|. .|+..||+.++..|+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777666666766666666666666666666666666664 2566666666666654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.9e-28 Score=234.61 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCChh
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA---------LDQGRWIHAYVDRNGIELDII 256 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 256 (498)
..++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMP----NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~ 332 (498)
+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.| |
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P------------d 174 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP------------E 174 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC------------C
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------------C
Confidence 99999999999999999999999986 3799999999999999999999999999999986555 5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVH 378 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 378 (498)
..||+.||.+|++.|++++|.++|++| +..|+..||+.++..+...
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 899999999999999999999999999 8899999999999888654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-24 Score=216.00 Aligned_cols=390 Identities=9% Similarity=-0.049 Sum_probs=313.5
Q ss_pred hhHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 010881 20 PFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA 97 (498)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 97 (498)
...+-.+...+.+. |++++|...|+++. .|+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRN--KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34566677888888 99999999999876 5788899999999999999999999999998843 2245678889999
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHh-------------------------------
Q 010881 98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF------------------------------- 146 (498)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------------------------- 146 (498)
+...|++++|...++.+.+.++. +......++..+........+.+.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999988753 3333333333333221111111111
Q ss_pred -------hccC---------CC-ChhhHHHHHHHHHc---cCCHHHHHHHHhhCCC----------------C-ChhHHH
Q 010881 147 -------DMSV---------NR-DVISWTSLINGYAK---SGQISIARQMFDKMPE----------------K-NAVSWS 189 (498)
Q Consensus 147 -------~~~~---------~~-~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~ 189 (498)
.... .| +...+......+.. .|++++|...|+++.+ | +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1100 01 13444444444554 8999999999988754 2 356788
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (498)
.+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999865 447788889999999999999999999998775 667888999999999999
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc
Q 010881 270 CIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA 346 (498)
Q Consensus 270 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (498)
++++|...|+++.+ .+..++..+...+...|++++|...++++.+. .|+ +..++..+...+...
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE-----------APEVPNFFAEILTDK 385 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT-----------CSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc-----------CHHHHHHHHHHHHHC
Confidence 99999999998753 46778999999999999999999999999875 333 568899999999999
Q ss_pred CCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881 347 GMLEAAKKVVREM----PIEPD----NYVLGALLNACRV---HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415 (498)
Q Consensus 347 g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (498)
|++++|...++++ +-.++ ...+..+...+.. .|++++|...++++++..|+++.++..++.++.+.|++
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence 9999999999987 22222 4488899999999 99999999999999999999999999999999999999
Q ss_pred chHHHHHHhhhhCC
Q 010881 416 NGVEKVRRGMEDNE 429 (498)
Q Consensus 416 ~~a~~~~~~m~~~~ 429 (498)
++|...+++..+..
T Consensus 466 ~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 466 DEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.6e-23 Score=200.10 Aligned_cols=339 Identities=12% Similarity=0.022 Sum_probs=248.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 131 (498)
++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++++.++. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 56678888899999999999999999998742 236777888888999999999999999999988743 5677888888
Q ss_pred HHHhCCChhhHHHHhhccCCCC---h---hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHH
Q 010881 132 LYATCNCMDPARKLFDMSVNRD---V---ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205 (498)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~~~---~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (498)
+|.+.|++++|.+.|+++...+ . ..+..++..+.. ..+..+...+...|++++|.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHH
Confidence 8999999999998888875432 2 455555443211 11223344455566666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-- 283 (498)
Q Consensus 206 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 283 (498)
..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666542 2345556666666666666666666666666553 44566666677777777777777777666542
Q ss_pred C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC--hHHHHHHHHHHhhcCC
Q 010881 284 R-DVFAYTSL------------ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG--VQHYGCLVDLLGRAGM 348 (498)
Q Consensus 284 ~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 348 (498)
| +...+..+ ...+...|++++|...|+++.+. .|+ .|. ..++..++.++.+.|+
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~---------~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPS---------IAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCS---------SHHHHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc---------chHHHHHHHHHHHHHHHHCCC
Confidence 2 23333333 78899999999999999999884 333 111 4578999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH------------HhHhcC-
Q 010881 349 LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN------------IYASTE- 413 (498)
Q Consensus 349 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g- 413 (498)
+++|...++++ ...| +...|..+..+|...|++++|...++++++..|+++..+..++. .|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999998 4445 78999999999999999999999999999999999988888884 355555
Q ss_pred ----CcchHHHHHHh
Q 010881 414 ----QWNGVEKVRRG 424 (498)
Q Consensus 414 ----~~~~a~~~~~~ 424 (498)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 44556666665
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-23 Score=206.74 Aligned_cols=390 Identities=10% Similarity=-0.079 Sum_probs=305.1
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 78 (498)
++|.+.+..+++.. |++.++..+..+|.+. |++++|...|+.+. ..+..+|..+..++.+.|++++|+..|++
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46788899999887 7899999999999999 99999999999865 34667899999999999999999999999
Q ss_pred hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh-----------------------------------CC----
Q 010881 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL-----------------------------------GW---- 119 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------------------------~~---- 119 (498)
+.+.+. ++......++..+........+.+.+..+... ..
T Consensus 99 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 99 LSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 998652 34444444444443322222222222111000 00
Q ss_pred -----CCchhHHHHHHHHHHh---CCChhhHHHHhhccCC----------------C-ChhhHHHHHHHHHccCCHHHHH
Q 010881 120 -----ESYDFVLNGLLHLYAT---CNCMDPARKLFDMSVN----------------R-DVISWTSLINGYAKSGQISIAR 174 (498)
Q Consensus 120 -----~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~li~~~~~~~~~~~A~ 174 (498)
+.+...+..+...+.. .|++++|..+|+++.. | +..++..+...+...|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 1113334444444444 8999999999987644 1 3457888889999999999999
Q ss_pred HHHhhCC--CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 010881 175 QMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252 (498)
Q Consensus 175 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (498)
..|+++. .|+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 258 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 335 (514)
T 2gw1_A 258 EDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-P 335 (514)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-S
T ss_pred HHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-h
Confidence 9999875 2447788899999999999999999999998763 3466788889999999999999999999999875 5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329 (498)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 329 (498)
.+..++..+..+|...|++++|...|+.+.+ .+..++..+...+...|++++|...++++.... |+. ...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~-----~~~ 408 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE--NKL-----DGI 408 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTS-----SSC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--hcc-----chH
Confidence 5778899999999999999999999998764 467789999999999999999999999998742 220 000
Q ss_pred CCChHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 010881 330 EPGVQHYGCLVDLLGR---AGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404 (498)
Q Consensus 330 ~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 404 (498)
.-...++..+..++.. .|++++|...++++ ...| +..++..+...|...|++++|...++++++..|+++..+..
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 0014489999999999 99999999999998 3344 68888999999999999999999999999999998776665
Q ss_pred H
Q 010881 405 L 405 (498)
Q Consensus 405 l 405 (498)
+
T Consensus 489 ~ 489 (514)
T 2gw1_A 489 I 489 (514)
T ss_dssp H
T ss_pred H
Confidence 5
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.5e-22 Score=199.56 Aligned_cols=386 Identities=10% Similarity=-0.004 Sum_probs=295.0
Q ss_pred hhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHH
Q 010881 20 PFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR 96 (498)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 96 (498)
...+..+...+.+. |++++|...|+.+. ..++.+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35567777888888 99999999998865 3467888888899999999999999999988743 225667788888
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC--------------------------
Q 010881 97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV-------------------------- 150 (498)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------------------- 150 (498)
++...|++++|...++ .....+.+... .+..+...+....|...+++..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGA----SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChH----HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 8889999999998886 33322221111 1222223333344444444432
Q ss_pred -----------CCChh---hHHHHHHHHHc--------cCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHhC
Q 010881 151 -----------NRDVI---SWTSLINGYAK--------SGQISIARQMFDKMPEK--N--------AVSWSAMINGYVQV 198 (498)
Q Consensus 151 -----------~~~~~---~~~~li~~~~~--------~~~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~ 198 (498)
..+.. ....+...+.. .|++++|..+|+++.+. + ..++..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 22111 22222222222 24788999999988653 2 23577777889999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010881 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278 (498)
Q Consensus 199 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 278 (498)
|++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999986 4667888889999999999999999999999876 667889999999999999999999999
Q ss_pred hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 010881 279 DSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV 355 (498)
Q Consensus 279 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 355 (498)
+++.+ .+...|..+...+...|++++|...++++.+. .|+ +...+..+..++...|++++|...
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT-----------LPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHhCCHHHHHHH
Confidence 98764 45778999999999999999999999999885 343 578899999999999999999999
Q ss_pred HHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881 356 VREM----P----IEPDNYVLGALLNACRVH----------GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 356 ~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (498)
|+++ + .......+......+... |++++|...++++++..|+++.++..++.+|.+.|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9987 1 112233345556677777 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCC
Q 010881 418 VEKVRRGMEDNE 429 (498)
Q Consensus 418 a~~~~~~m~~~~ 429 (498)
|.+.+++..+..
T Consensus 481 A~~~~~~al~~~ 492 (537)
T 3fp2_A 481 AIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=8.3e-22 Score=192.28 Aligned_cols=362 Identities=10% Similarity=-0.025 Sum_probs=232.0
Q ss_pred CChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHH
Q 010881 18 WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI 94 (498)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 94 (498)
.++..+..+...|.+. |++++|...|+.+. ..+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4567888899999999 99999999999865 4578899999999999999999999999998854 2256778889
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHH
Q 010881 95 LRACADTSCLFVGLICHAQVIRLGWESYD---FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171 (498)
Q Consensus 95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (498)
..++...|++++|...++++.+..+. +. ..+..+...+...+ +..+...+.+.|+++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHH
Confidence 99999999999999999999986533 33 55555544422111 112223333445555
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881 172 IARQMFDKMP---EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248 (498)
Q Consensus 172 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (498)
+|...|+++. ..+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555554443 1244455555555555555555555555555431 23344555555555555555555555555554
Q ss_pred hCCCCChhHHHHH------------HHHHHhcCCHHHHHHHHhhCCC--CC-----hhHHHHHHHHHHhcCChHHHHHHH
Q 010881 249 NGIELDIILGTAI------------IDMYAKCGCIETACSVFDSMPN--RD-----VFAYTSLISGLANHDQSASAIELF 309 (498)
Q Consensus 249 ~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~ 309 (498)
.. +.+...+..+ ..+|...|++++|...|+++.+ |+ ...|..+...+.+.|++++|...+
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 42 2233333333 6667777777777777776643 32 235666777777777777777777
Q ss_pred HHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------H
Q 010881 310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNA------------C 375 (498)
Q Consensus 310 ~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~ 375 (498)
+++.+. .|+ +..+|..+..+|...|++++|...++++ ...| +...+..+..+ |
T Consensus 319 ~~a~~~--~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 319 SEVLQM--EPD-----------NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHHHHh--Ccc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 777663 232 4677777777777777777777777776 5556 34444444422 3
Q ss_pred HhcC-----CHHHHHHHHHH-HHhcCCCCch----------HHHHHHHHhHhcCCcch
Q 010881 376 RVHG-----DVDLGKETVES-LVERSLDHEG----------VHVLLSNIYASTEQWNG 417 (498)
Q Consensus 376 ~~~g-----~~~~A~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~ 417 (498)
...| +.+++.+.|++ +++..|+... .+..+..+|...++.+.
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3333 56777888886 6666666321 34455555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.5e-20 Score=186.09 Aligned_cols=385 Identities=9% Similarity=-0.028 Sum_probs=291.5
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQ 78 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 78 (498)
+.|.+.+..+++.. +.++.++..+..+|.+. |++++|.+.|+.+. ..+..+|..+...+...|++++|+..|+.
T Consensus 42 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 118 (537)
T 3fp2_A 42 NEAIKYYQYAIELD-PNEPVFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118 (537)
T ss_dssp C-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56778888888876 44788999999999999 99999999999865 44678899999999999999999999973
Q ss_pred hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC------CCCchh----------------------------
Q 010881 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG------WESYDF---------------------------- 124 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~---------------------------- 124 (498)
+ . ..|+.. ...+..+...+....+...++.++... ..|+..
T Consensus 119 ~-~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 119 L-S--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp H-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred H-h--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 3 3 223322 122333444445567777777764431 111111
Q ss_pred --HHHHHHHHHHhC--------CChhhHHHHhhccCCCCh----------hhHHHHHHHHHccCCHHHHHHHHhhCC--C
Q 010881 125 --VLNGLLHLYATC--------NCMDPARKLFDMSVNRDV----------ISWTSLINGYAKSGQISIARQMFDKMP--E 182 (498)
Q Consensus 125 --~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~----------~~~~~li~~~~~~~~~~~A~~~~~~~~--~ 182 (498)
....+...+... |++++|..+|+++...++ .++..+...+...|++++|...|++.. .
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~ 273 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 222233332222 478899999988764322 246677778889999999999999886 4
Q ss_pred CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 010881 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262 (498)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (498)
|+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 567788899999999999999999999998864 3457788899999999999999999999999876 56678899999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881 263 DMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l 339 (498)
.+|...|++++|...|+++.+ .+...+..+...+...|++++|...|+++.+.. |+. .........+..+
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~-----~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQ-----EKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHC-----SSCSSTTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccc-----hhhHHHHHHHHHH
Confidence 999999999999999998764 466789999999999999999999999988753 220 0111233445566
Q ss_pred HHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 340 VDLLGRA----------GMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 340 ~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
..++... |++++|...|+++ ...| +...+..+...|...|++++|.+.|+++++..|.......
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 7778888 9999999999998 3344 6888999999999999999999999999999999876544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.4e-19 Score=168.96 Aligned_cols=295 Identities=8% Similarity=-0.046 Sum_probs=209.9
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccC
Q 010881 89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG 168 (498)
Q Consensus 89 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (498)
..+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|++....
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 66 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL---------------- 66 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------
Confidence 44555666666777777777777777666532 4555555666666666666666665543210
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC---C-HHHHHH------------HHHHHhc
Q 010881 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP---N-HAGIVG------------ALTACAF 232 (498)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~-~~~~~~------------ll~~~~~ 232 (498)
...+...+..+...+...|++++|...|+++.+. .| + ...+.. +...+..
T Consensus 67 ------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 67 ------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0113344555555555555555555555555543 23 1 112222 2456677
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 010881 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELF 309 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 309 (498)
.|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+ .+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888887765 56777888888888888999999888887654 46678888888899999999999999
Q ss_pred HHHHHcCCCCCchhhhhhCCCCChHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHH
Q 010881 310 MRMQLEGVVPNESMSEIYGIEPGVQHYG------------CLVDLLGRAGMLEAAKKVVREM-PIEPD-N----YVLGAL 371 (498)
Q Consensus 310 ~~m~~~~~~p~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l 371 (498)
++..+. .|+ +...+. .+...+.+.|++++|...++++ ...|+ . ..+..+
T Consensus 212 ~~a~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 212 RECLKL--DQD-----------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHHHH--CTT-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHhh--Ccc-----------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 988874 333 233332 3477799999999999999998 33443 3 235567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
...+...|++++|...++++++..|+++.++..++.++...|++++|.+.+++..+.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999999998764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.6e-19 Score=170.20 Aligned_cols=329 Identities=11% Similarity=0.003 Sum_probs=243.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH 131 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 131 (498)
|+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 35567888899999999999999999998843 235678888999999999999999999999998643 5678888999
Q ss_pred HHHhCCChhhHHHHhhccCCCCh------hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHH
Q 010881 132 LYATCNCMDPARKLFDMSVNRDV------ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL 205 (498)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 205 (498)
++...|++++|...|++....++ ..+..+..... ...+..+...+...|++++|.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999988764333 22322211100 112333455666777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-- 283 (498)
Q Consensus 206 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 283 (498)
..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+.+.+
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777776643 3345566666666777777777777777776654 55666777777777777777777777776543
Q ss_pred C-ChhHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881 284 R-DVFAYT------------SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350 (498)
Q Consensus 284 ~-~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 350 (498)
| +...+. .+...+...|++++|...++++.+.. |+. .......+..+..++...|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~-------~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSV-------AEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSS-------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc-------hHHHHHHHHHHHHHHHHccCHH
Confidence 2 222222 33667889999999999999998852 331 0001234667889999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 351 AAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 351 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
+|...+++. ...| +..++..+...+...|++++|.+.++++++..|+++.....+..+....
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999998 4445 7889999999999999999999999999999999998888887665543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=7.1e-19 Score=163.76 Aligned_cols=298 Identities=11% Similarity=-0.054 Sum_probs=209.8
Q ss_pred CCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHH
Q 010881 84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING 163 (498)
Q Consensus 84 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 163 (498)
.+.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|..+++++...
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------- 85 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDL----------- 85 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------
Confidence 3345555666666666666777777666666665432 3334444445555555555555544432210
Q ss_pred HHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010881 164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD-LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242 (498)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 242 (498)
...+...|..+...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...
T Consensus 86 -----------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 86 -----------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp -----------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 1124556667777777777 7777777777777643 23455667777777777888888888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010881 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319 (498)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 319 (498)
++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.....
T Consensus 148 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 148 YFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 87777765 44566777788888888899998888887654 356788888899999999999999999887742110
Q ss_pred CchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
.. ....+....++..+..++...|++++|...+++. ...| +...+..+...+...|++++|.+.++++++..|+
T Consensus 227 ~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 227 GN----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp SC----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred cc----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 00 0011234689999999999999999999999998 3334 6788899999999999999999999999999999
Q ss_pred CchHHHHHHHHh-HhcCCcc
Q 010881 398 HEGVHVLLSNIY-ASTEQWN 416 (498)
Q Consensus 398 ~~~~~~~l~~~~-~~~g~~~ 416 (498)
++..+..++.++ ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 999999999988 4555543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=1.3e-17 Score=164.38 Aligned_cols=363 Identities=12% Similarity=-0.011 Sum_probs=225.1
Q ss_pred ChhHHHHHHHHhhc----CCCCChhHHHHHhhhcC-CCCcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCCcc
Q 010881 19 DPFAVGKIIGFCSA----SDIGDLSHGYRLFVCLQ-YRTTFIWNTMIRGFAE----KNEPIKAFALYKQMLRSDFLPNNY 89 (498)
Q Consensus 19 ~~~~~~~l~~~~~~----~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~ 89 (498)
++..+..|...|.. . ++++.|...|+... ..++.++..|...|.. .+++++|+..|++..+.| +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~--~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETT--KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCC--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 45555556666655 5 67777777776543 3455666666666666 677777777777776643 444
Q ss_pred hHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCChhhHHHHhhccCC-CChhhHHHH
Q 010881 90 TFSFILRACAD----TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT----CNCMDPARKLFDMSVN-RDVISWTSL 160 (498)
Q Consensus 90 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l 160 (498)
.+..+-..|.. .+++++|...+++..+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55555556655 567777777777776654 44555566666665 5677777777765443 355666666
Q ss_pred HHHHHc----cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 010881 161 INGYAK----SGQISIARQMFDKMPEK-NAVSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA 231 (498)
Q Consensus 161 i~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 231 (498)
...|.. .++.++|.+.|++..+. +..++..+...|.. .+++++|...|++..+.| +...+..+...+.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 666666 67777777777665432 45566666666665 667777777777766543 2334444444454
Q ss_pred c----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcC-
Q 010881 232 F----LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-----GCIETACSVFDSMPN-RDVFAYTSLISGLANHD- 300 (498)
Q Consensus 232 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~- 300 (498)
. .++.++|...++...+.+ +...+..+...|... +++++|...|++..+ .+...+..|...|...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGS 343 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Confidence 4 567777777777666554 344555666666665 677777777766554 34556666666666544
Q ss_pred --ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010881 301 --QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREMPIEPDNYVLGALLNA 374 (498)
Q Consensus 301 --~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 374 (498)
+.++|..+|++..+.| +...+..|...|.. .+++++|...|++.--..+...+..+...
T Consensus 344 ~~~~~~A~~~~~~a~~~~---------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~ 408 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG---------------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5667777777766643 35666667776666 67777777777766111245566666666
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHhH
Q 010881 375 CRV----HGDVDLGKETVESLVERSLD---HEGVHVLLSNIYA 410 (498)
Q Consensus 375 ~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 410 (498)
|.. .+++++|...|+++.+.+|+ ++.....++.++.
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 666 67777777777777776643 4444445544443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=8.4e-19 Score=166.10 Aligned_cols=277 Identities=13% Similarity=-0.010 Sum_probs=215.8
Q ss_pred hCCChhhHHH-HhhccCC--C-----ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhH
Q 010881 135 TCNCMDPARK-LFDMSVN--R-----DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKE 203 (498)
Q Consensus 135 ~~g~~~~a~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 203 (498)
..|++++|.+ .|++... + +...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4467777777 7765432 1 345677788888888888888888887753 356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH---------------HHHHHHhc
Q 010881 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA---------------IIDMYAKC 268 (498)
Q Consensus 204 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 268 (498)
|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 888888888764 3466778888888888888888888888888764 333322221 23333488
Q ss_pred CCHHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881 269 GCIETACSVFDSMPN--R---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343 (498)
Q Consensus 269 g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 343 (498)
|++++|...|+++.+ | +..++..+...+...|++++|...|+++... .|+ +..++..+..++
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~-----------~~~~~~~l~~~~ 261 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPN-----------DYLLWNKLGATL 261 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC-----------CHHHHHHHHHHH
Confidence 999999999998764 3 4678999999999999999999999999875 333 578999999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------chHHHHHHHHhH
Q 010881 344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH-----------EGVHVLLSNIYA 410 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~ 410 (498)
...|++++|...|+++ ...| +..++..+...|...|++++|...++++++..|++ ..++..++.+|.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999998 4445 68899999999999999999999999999988877 778999999999
Q ss_pred hcCCcchHHHHHHhhh
Q 010881 411 STEQWNGVEKVRRGME 426 (498)
Q Consensus 411 ~~g~~~~a~~~~~~m~ 426 (498)
..|++++|..++++..
T Consensus 342 ~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 342 MLGQSDAYGAADARDL 357 (368)
T ss_dssp HHTCGGGHHHHHTTCH
T ss_pred HhCChHhHHHhHHHHH
Confidence 9999999999987543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.3e-17 Score=155.12 Aligned_cols=281 Identities=11% Similarity=0.013 Sum_probs=188.8
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL 129 (498)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (498)
..++..+..+...+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|..+++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 3577788889999999999999999999998753 235667777888999999999999999999998643 56777778
Q ss_pred HHHHHhCC-ChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHh
Q 010881 130 LHLYATCN-CMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFK 202 (498)
Q Consensus 130 ~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 202 (498)
...+...| ++++|.+.|++.... +..+|..+...+...|++++|...|++..+ .+...+..+...+...|+++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 88888888 888888888765422 334455555555555555555555554431 12333444444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881 203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282 (498)
Q Consensus 203 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 282 (498)
+|...+++..+ .. +.+..++..+...|...|++++|...++++.
T Consensus 177 ~A~~~~~~al~-----------------------------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 177 LAERFFSQALS-----------------------------------IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHT-----------------------------------TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------------------------hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55555555444 32 3344555555555555555555555555443
Q ss_pred C------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881 283 N------------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350 (498)
Q Consensus 283 ~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 350 (498)
+ .+..++..+...+...|++++|...+++..+. .|+ +...+..+..++...|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~-----------~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQ-----------NASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CSHHHHHHHHHHHHHTCHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--Ccc-----------chHHHHHHHHHHHHhccHH
Confidence 1 23457777777888888888888888887764 233 4677888888888888888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCCH
Q 010881 351 AAKKVVREM-PIEP-DNYVLGALLNAC-RVHGDV 381 (498)
Q Consensus 351 ~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~~ 381 (498)
+|...+++. .+.| +...+..+..++ ...|+.
T Consensus 288 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 288 NAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888888887 5556 566666666666 444543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=7.8e-17 Score=158.75 Aligned_cols=360 Identities=12% Similarity=0.047 Sum_probs=300.7
Q ss_pred HHHhhhc-CCCCcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHH
Q 010881 42 YRLFVCL-QYRTTFIWNTMIRGFAE----KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD----TSCLFVGLICHA 112 (498)
Q Consensus 42 ~~~~~~~-~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~ 112 (498)
...+... ...++.++..+...|.. .+++++|+..|++..+.| +...+..|-..|.. .+++++|..+++
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4444433 35578888888888888 899999999999998864 56677788888888 899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHh----CCChhhHHHHhhccCCC-ChhhHHHHHHHHHc----cCCHHHHHHHHhhCCC-
Q 010881 113 QVIRLGWESYDFVLNGLLHLYAT----CNCMDPARKLFDMSVNR-DVISWTSLINGYAK----SGQISIARQMFDKMPE- 182 (498)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~- 182 (498)
+..+.| +...+..|...|.. .+++++|.+.|++.... ++.++..+...|.. .++.++|.+.|++..+
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999876 56677778888888 88999999999886644 67788888888887 8899999999988754
Q ss_pred CChhHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCC
Q 010881 183 KNAVSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF----LGALDQGRWIHAYVDRNGIELD 254 (498)
Q Consensus 183 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 254 (498)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...+.. .+++++|..+++...+.+ +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 367888889999988 899999999999998865 45566667777765 789999999999988765 4
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCchhh
Q 010881 255 IILGTAIIDMYAK----CGCIETACSVFDSMPN-RDVFAYTSLISGLANH-----DQSASAIELFMRMQLEGVVPNESMS 324 (498)
Q Consensus 255 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~ 324 (498)
...+..+...|.. .++.++|...|++..+ .+...+..|...|... ++.++|...|++..+.+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------- 326 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------- 326 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--------
Confidence 5677778888887 8999999999998775 4677888888888887 89999999999998865
Q ss_pred hhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 010881 325 EIYGIEPGVQHYGCLVDLLGRAG---MLEAAKKVVREMPIEPDNYVLGALLNACRV----HGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 397 (498)
+...+..+...|...| ++++|.+.|++.--..++..+..+...|.. .+++++|..+|+++.+.+
T Consensus 327 -------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 327 -------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp -------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred -------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 4678888888888766 889999999988112567888889999988 899999999999999865
Q ss_pred CchHHHHHHHHhHh----cCCcchHHHHHHhhhhCCc
Q 010881 398 HEGVHVLLSNIYAS----TEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 398 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 430 (498)
++.++..|+.+|.. .+++++|...|++..+.+.
T Consensus 398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 56789999999998 8999999999999988763
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=7.8e-19 Score=163.52 Aligned_cols=296 Identities=11% Similarity=0.124 Sum_probs=137.3
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 010881 22 AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT 101 (498)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 101 (498)
..+.|+. +. |++++|.+++++++.|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...
T Consensus 8 a~~~ll~---~~--~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIE---HI--GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---Hc--cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 3444444 45 88999999999996664 8999999999999999999999763 6778999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCC
Q 010881 102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP 181 (498)
Q Consensus 102 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 181 (498)
|++++|..+++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 9999999988887774 44578889999999999999999988864 77789999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881 182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261 (498)
Q Consensus 182 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (498)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 47999999999999999999999988 3788999999999999999999655443 23344445578
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881 262 IDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANH--DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336 (498)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~ 336 (498)
+..|.+.|++++|..+++.... .....|+-|.-+|++- ++..+.++.|..- -++.| ++ ...-+...|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k---~~---~~~~~~~~w 285 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPK---VL---RAAEQAHLW 285 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHH---HH---HHHHTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcH---HH---HHHHHHHHH
Confidence 9999999999999999998764 3556788887777764 3444454444321 11111 00 000146789
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 010881 337 GCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
..++..|..-++++.|....-+-
T Consensus 286 ~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhhchHHHHHHHHHhC
Confidence 99999999999999998876665
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1e-16 Score=159.54 Aligned_cols=393 Identities=10% Similarity=0.020 Sum_probs=281.2
Q ss_pred CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH
Q 010881 17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF 93 (498)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 93 (498)
+-+...|..++.. .+. |+++.|+.+|+++.. .+...|..++..+.+.|++++|..+|+++... .|+...|..
T Consensus 10 P~~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 3477889999984 677 999999999999763 35668999999999999999999999999884 477777776
Q ss_pred HHHHH-HccCCcHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------CCChhhHHHHhhccCC-CCh--
Q 010881 94 ILRAC-ADTSCLFVGLI----CHAQVIRL-GWES-YDFVLNGLLHLYAT---------CNCMDPARKLFDMSVN-RDV-- 154 (498)
Q Consensus 94 ll~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~-- 154 (498)
.+... ...|+++.|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++... |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66533 34577776665 67776654 5443 45677777776654 6889999999998764 321
Q ss_pred -hhHHHHHHHH-------------HccCCHHHHHHHHhh-------CC------CCC--------hhHHHHHHHHHHhC-
Q 010881 155 -ISWTSLINGY-------------AKSGQISIARQMFDK-------MP------EKN--------AVSWSAMINGYVQV- 198 (498)
Q Consensus 155 -~~~~~li~~~-------------~~~~~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~- 198 (498)
..|....... .+.++++.|..++.. +. .|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 2333222210 123456677765554 11 111 23455554433322
Q ss_pred ---CCH----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHhCCCCChhH
Q 010881 199 ---DLF----KEALEHFNYMQLCGFRPNHAGIVGALTACAF-------LGALD-------QGRWIHAYVDRNGIELDIIL 257 (498)
Q Consensus 199 ---g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 257 (498)
++. +.+..+|++.+... +-+...|......+.. .|+++ +|..+++...+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 47778888888752 3345566666666654 68877 88999988886323556888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881 258 GTAIIDMYAKCGCIETACSVFDSMPN--R-DV-FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333 (498)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 333 (498)
+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+. .|+ +.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~-----------~~ 390 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ART-----------RH 390 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTC-----------CT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCC-----------ch
Confidence 99999999999999999999998764 3 32 47888888888899999999999998774 222 23
Q ss_pred HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHH
Q 010881 334 QHYGCLVDL-LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG----VHVLLS 406 (498)
Q Consensus 334 ~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~ 406 (498)
..|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++++...|.++. .+...+
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 333333322 34689999999999987 3335 6788889999999999999999999999998776554 677778
Q ss_pred HHhHhcCCcchHHHHHHhhhhC
Q 010881 407 NIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
......|+.+.+..+.+++.+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888889999999999888754
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.7e-17 Score=151.15 Aligned_cols=265 Identities=10% Similarity=0.002 Sum_probs=172.6
Q ss_pred HHhCCChhhHHHHhhccCCCCh----hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881 133 YATCNCMDPARKLFDMSVNRDV----ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF 208 (498)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (498)
....|++..|+..+++....++ .....+.++|...|+++.|...++....|+..++..+...+...++.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456777777777766554332 233456677777777777777776654456667777777777777888888888
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 010881 209 NYMQLCGFRPNHA-GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD 285 (498)
Q Consensus 209 ~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 285 (498)
+++...+..|+.. .+..+...+...|++++|...++. +.+...+..++..|.+.|++++|.+.|+++.+ |+
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 8877766555443 344445666777777777777765 45666777777777777777777777777653 33
Q ss_pred hhHHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 010881 286 VFAYTSL----ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P 360 (498)
Q Consensus 286 ~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 360 (498)
.. ...+ +..+...|++++|..+|+++.+. .|+ +...++.+..++.+.|++++|...|++. .
T Consensus 163 ~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~-----------~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 163 AT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSP-----------TLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp CH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 1222 22333447777777777777764 233 5677777777777778888887777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881 361 IEP-DNYVLGALLNACRVHGDVDL-GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 361 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
..| ++.++..++..+...|+.++ +.++++++++.+|+++.+. ....+.+.++++..-
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 344 56677777777777777754 4677777777777776432 334444555554443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=3.1e-18 Score=162.11 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=208.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 229 (498)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455688888888888999999988887753 367788889999999999999999999988763 3456788888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhHHHHHHH
Q 010881 230 CAFLGALDQGRWIHAYVDRNGIELD----------IILGTAIIDMYAKCGCIETACSVFDSMPN--R---DVFAYTSLIS 294 (498)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~ 294 (498)
+...|++++|...++.+.+.. +.+ ..++..+...|...|++++|...|+++.+ | +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999887754 222 22334457889999999999999998864 3 5778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL 372 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 372 (498)
.|...|++++|...|+++.+. .|+ +..+|..+..+|...|++++|...|+++ ...| +..++..+.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 288 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPE-----------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 999999999999999999885 333 5889999999999999999999999998 4445 588999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC------------CchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881 373 NACRVHGDVDLGKETVESLVERSLD------------HEGVHVLLSNIYASTEQWNGVEKVRRG 424 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (498)
..|...|++++|...++++++..|+ +...+..++.++...|+.+.+.++.++
T Consensus 289 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999999998876 356788999999999999999888765
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2.1e-16 Score=143.86 Aligned_cols=250 Identities=10% Similarity=0.036 Sum_probs=205.8
Q ss_pred HHHccCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881 163 GYAKSGQISIARQMFDKMPEKNA----VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238 (498)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 238 (498)
-....|++..|+..++.....++ .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34456999999999988765432 34456789999999999999877552 35677788889999999999999
Q ss_pred HHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881 239 GRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317 (498)
Q Consensus 239 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 317 (498)
|...++.+...+..| +...+..+..+|...|++++|.+.+++ ..+...+..++..+.+.|++++|...|+++.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 999999998876544 566777888999999999999999999 5678899999999999999999999999998862
Q ss_pred CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
|+. +.......++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|++.++++++.+
T Consensus 161 -p~~---------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 161 -EDA---------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp -TTC---------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cCc---------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 441 00111122344455669999999999998 333588899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhHhcCCcch-HHHHHHhhhhCC
Q 010881 396 LDHEGVHVLLSNIYASTEQWNG-VEKVRRGMEDNE 429 (498)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 429 (498)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 568888887644
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=7.9e-17 Score=158.01 Aligned_cols=366 Identities=10% Similarity=-0.122 Sum_probs=227.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHC-----C--CCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCC----
Q 010881 52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-----D--FLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGW---- 119 (498)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---- 119 (498)
....||.+...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...++++.+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888888888888888888876541 1 122 234677788888888888888888887765311
Q ss_pred --C-CchhHHHHHHHHHHh--CCChhhHHHHhhccC--CC-ChhhHHHHHHH---HHccCCHHHHHHHHhhCC---CCCh
Q 010881 120 --E-SYDFVLNGLLHLYAT--CNCMDPARKLFDMSV--NR-DVISWTSLING---YAKSGQISIARQMFDKMP---EKNA 185 (498)
Q Consensus 120 --~-~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~--~~-~~~~~~~li~~---~~~~~~~~~A~~~~~~~~---~~~~ 185 (498)
. ....++..+..++.. .+++++|.+.|++.. .| ++..+..+..+ +...++.++|++.|++.. ..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 123445444444444 346788888887754 23 44455544444 334566666766666543 2245
Q ss_pred hHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881 186 VSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261 (498)
Q Consensus 186 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (498)
.++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 555555544443 356778888888877653 3455667777888888888888888888887765 5556666666
Q ss_pred HHHHHhc-------------------CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010881 262 IDMYAKC-------------------GCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319 (498)
Q Consensus 262 ~~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 319 (498)
..+|... +.++.|...|++..+ .+..++..+...|...|++++|...|++..+....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 6665432 235667777766543 456788899999999999999999999998753222
Q ss_pred CchhhhhhCCCCChHHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 320 NESMSEIYGIEPGVQHYGCLVD-LLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
.. ....+..+.. .+...|+.++|+..|++. .+.|+...... ....+.+++++.++.+|+
T Consensus 368 ~~----------~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 368 VA----------KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp HH----------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-
T ss_pred hH----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCC
Confidence 10 0122333333 345789999999999987 66676433322 234566778888999999
Q ss_pred CchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeE
Q 010881 398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL 438 (498)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 438 (498)
++.++..++.+|...|++++|++.|++..+.+...+...+|
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999999998876543333333
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2.2e-15 Score=156.17 Aligned_cols=349 Identities=11% Similarity=0.047 Sum_probs=260.7
Q ss_pred ChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHH
Q 010881 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YR-----TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92 (498)
Q Consensus 19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 92 (498)
++.-....+..|... |.+.+|.++++++. .+ +...-+.++.+..+. +..+..+..++.-. ....
T Consensus 984 ~PeeVs~~vKaf~~a--glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~ 1053 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAP 1053 (1630)
T ss_pred CHHHhHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHH
Confidence 334446667777777 88888888888765 22 234556666666665 55555555555432 1133
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHH
Q 010881 93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172 (498)
Q Consensus 93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (498)
.+...+...|.+++|..+|++.. ......+.+ +...+++++|.++.++. .++.+|..+..++.+.|++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHH
Confidence 46677788888888888888862 111222222 22678888888888866 346788899999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 010881 173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE 252 (498)
Q Consensus 173 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (498)
|++.|.+. .|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 99999775 567788889999999999999999998877654 33333335888888888887544442 1 4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC
Q 010881 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG 332 (498)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~ 332 (498)
++...+..+.+.|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++.. +
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------------------n 1249 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------------------S 1249 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------------------C
Confidence 45666777889999999999999999985 589999999999999999999998862 3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (498)
..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.+++.+...|..|+.+|.+-
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 68899999999999999999887764 3456667779999999999999999999999999999988888887777664
Q ss_pred --CCcchHHHHHH
Q 010881 413 --EQWNGVEKVRR 423 (498)
Q Consensus 413 --g~~~~a~~~~~ 423 (498)
++..++.++|.
T Consensus 1328 ~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1328 KPQKMREHLELFW 1340 (1630)
T ss_pred CHHHHHHHHHHHH
Confidence 55556666654
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1e-17 Score=158.57 Aligned_cols=284 Identities=12% Similarity=-0.028 Sum_probs=172.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 010881 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133 (498)
Q Consensus 54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (498)
..+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++++..+ .+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344445555555555555555555555422 11333444444555555555555555555554432 2344444444455
Q ss_pred HhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHH
Q 010881 134 ATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY 210 (498)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (498)
...|++++|.+.++++... +...+..+... .. ...+ ...+..+. .+...|++++|...|++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~ 206 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG-------GAGL-GPSKRILG-SLLSDSLFLEVKELFLA 206 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------CTTH-HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh-------hhcc-cHHHHHHH-HHhhcccHHHHHHHHHH
Confidence 5555555554444433211 11111000000 00 0000 00111233 33388999999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh
Q 010881 211 MQLCGFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDV 286 (498)
Q Consensus 211 m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 286 (498)
+.+..... +..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+.
T Consensus 207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 98764221 47788889999999999999999999988875 56778899999999999999999999998753 467
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (498)
.++..+...|...|++++|...|+++... .|+..-...........+|..+..+|...|+.++|..++++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 78999999999999999999999998874 22200000000011267788888888888888888877764
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.5e-17 Score=152.46 Aligned_cols=276 Identities=10% Similarity=0.020 Sum_probs=141.7
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
++|.++.+.+ +++.+|..|..++.+. |++++|.+.|.+. +|...|..++.++...|++++|+..++..++
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~--g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQK--GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHc--CCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3455555544 4556999999999999 9999999999764 6777999999999999999999998877776
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161 (498)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 161 (498)
. .+++.+.+.++.+|.+.|+++++.++++ .|+..+++.+...|...|.+++|..+|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 3 4567889999999999999999988874 367779999999999999999999999977 5899999
Q ss_pred HHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010881 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW 241 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 241 (498)
.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+ ..++.....++..|.+.|.+++|..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999994 8899999999999999999996655542 2333345578899999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHH
Q 010881 242 IHAYVDRNGIELDIILGTAIIDMYAK--CGCIETACSVFDSMPN--------RDVFAYTSLISGLANHDQSASAIELF 309 (498)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~ 309 (498)
+++...... +-....|+-|.-+|++ -+++.+.++.|..-.. .+...|.-+...|.+.++++.|....
T Consensus 229 lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 229 MLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 999988665 5667788888888876 4567777777775543 25678999999999999999888743
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.7e-17 Score=151.83 Aligned_cols=257 Identities=11% Similarity=-0.009 Sum_probs=189.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881 156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF 232 (498)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 232 (498)
.+..+...+...|++++|..+|+++.+ .+...+..+..++...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344455555555666666666555431 245566666666777777777777777766642 2345566666666667
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHH--------------HH-HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 010881 233 LGALDQGRWIHAYVDRNGIELDIILGTAI--------------ID-MYAKCGCIETACSVFDSMPN---RDVFAYTSLIS 294 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 294 (498)
.|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++.+ .+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 777777777777666553 2223333222 22 36777888999988887653 36778888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL 372 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 372 (498)
.+...|++++|...++++.+. .|+ +..++..+..++...|++++|...++++ ...| +..++..+.
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPD-----------DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999998875 233 5788999999999999999999999987 3334 688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC------------CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 373 NACRVHGDVDLGKETVESLVERSLD------------HEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
..+...|++++|.+.++++++..|. +...+..++.++...|++++|..++++..+
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998 677899999999999999999999976643
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=2.3e-17 Score=156.02 Aligned_cols=233 Identities=8% Similarity=-0.098 Sum_probs=197.4
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999999864 4467789999999999999999999999999886 667889999999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-C----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881 264 MYAKCGCIETACSVFDSMPN--R-D----------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330 (498)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 330 (498)
+|...|++++|...|+++.+ | + ...+..+...+...|++++|...++++.+.. |+ .
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------~ 210 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GD---------M 210 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CS---------S
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cC---------c
Confidence 99999999999999998864 2 1 2233445788999999999999999998853 32 1
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
++..++..+...|...|++++|...|+++ ...| +..+|..+..+|...|++++|+..++++++..|+++.++..++.+
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 25789999999999999999999999998 3344 688999999999999999999999999999999999999999999
Q ss_pred hHhcCCcchHHHHHHhhhhCC
Q 010881 409 YASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 409 ~~~~g~~~~a~~~~~~m~~~~ 429 (498)
|...|++++|...++++.+..
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999997643
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2e-15 Score=150.28 Aligned_cols=361 Identities=9% Similarity=0.009 Sum_probs=267.9
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHH
Q 010881 50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG 128 (498)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 128 (498)
..+...|..++. +.+.|++++|..+|+++.+. .| +...|..++..+.+.|+++.|..+|+++++.. |+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 346778999998 47899999999999999983 35 56678899999999999999999999999875 46667777
Q ss_pred HHHH-HHhCCChhhHHH----HhhccC-----C-CChhhHHHHHHHHHc---------cCCHHHHHHHHhhCCC-CCh--
Q 010881 129 LLHL-YATCNCMDPARK----LFDMSV-----N-RDVISWTSLINGYAK---------SGQISIARQMFDKMPE-KNA-- 185 (498)
Q Consensus 129 l~~~-~~~~g~~~~a~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~-~~~-- 185 (498)
++.. ....|+.+.|.+ +|++.. . .+...|...+....+ .|+++.|..+|++... |..
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 7753 345688887765 666542 2 355678777776654 6899999999998764 321
Q ss_pred -hHHHHHHHHH-------------HhCCCHhHHHHHHHHHH------HcC---CCCCH--------HHHHHHHHHHhcc-
Q 010881 186 -VSWSAMINGY-------------VQVDLFKEALEHFNYMQ------LCG---FRPNH--------AGIVGALTACAFL- 233 (498)
Q Consensus 186 -~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~~--------~~~~~ll~~~~~~- 233 (498)
..|....... .+.+++..|..+++++. +.. ++|+. ..|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 2333222211 12456777877777632 111 24431 3444444332221
Q ss_pred ---CCh----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHHhhCCC---C-ChhH
Q 010881 234 ---GAL----DQGRWIHAYVDRNGIELDIILGTAIIDMYAK-------CGCIE-------TACSVFDSMPN---R-DVFA 288 (498)
Q Consensus 234 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~ 288 (498)
++. +.+..+|+++.... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 233 36778898888764 6678899988888876 78877 89999998764 3 5778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 010881 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG-VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-N 365 (498)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~ 365 (498)
|..++..+.+.|++++|..+|+++.+. .|+ + ...|..++..+.+.|++++|..+|++. ...|+ .
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~ 390 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDI-----------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 390 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc-----------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence 999999999999999999999999884 333 2 258999999999999999999999998 44443 3
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 366 YVLGALLNA-CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 366 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
..|...... +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 333332222 3468999999999999999999999999999999999999999999999998764
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=3.2e-14 Score=147.68 Aligned_cols=362 Identities=11% Similarity=0.041 Sum_probs=274.4
Q ss_pred HhHHHHHHHHhC--CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881 4 IKQIQSHLTVSG--TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81 (498)
Q Consensus 4 ~~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 81 (498)
+.++++...-.+ +.-+....+.|+....+. +..+..+..+....-+ ..-+...+...|.+++|..+|++...
T Consensus 1004 aieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~ 1077 (1630)
T 1xi4_A 1004 LIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV 1077 (1630)
T ss_pred HHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 445555555221 123446777777766665 3444444444443222 45577888899999999999999621
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881 82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161 (498)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 161 (498)
.....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+. .|...|..++
T Consensus 1078 -----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa 1141 (1630)
T 1xi4_A 1078 -----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVV 1141 (1630)
T ss_pred -----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHH
Confidence 1222233332 678899999988866 35788999999999999999999999764 6788899999
Q ss_pred HHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 010881 162 NGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 239 (498)
.++.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+. + .|+...+..+...|...|++++|
T Consensus 1142 ~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A 1142 QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999987553 33334456999999999988644332 2 45667788899999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010881 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP 319 (498)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 319 (498)
..+|..+ ..|..+..+|++.|+++.|.+.+++. .+..+|..+..+|...|++..|....-.+..
T Consensus 1215 ~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv----- 1278 (1630)
T 1xi4_A 1215 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 1278 (1630)
T ss_pred HHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-----
Confidence 9999885 48999999999999999999999988 5668999999999999999999887665432
Q ss_pred CchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcC
Q 010881 320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH--GDVDLGKETVESLVERS 395 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~ 395 (498)
++..+..++..|.+.|.+++|+.+++.. ++.| ....|.-|...|.+. ++..++.+.|..-+...
T Consensus 1279 ------------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1279 ------------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 3677889999999999999999999877 6666 455666666666554 45666666666555544
Q ss_pred C-----CCchHHHHHHHHhHhcCCcchHHHHH
Q 010881 396 L-----DHEGVHVLLSNIYASTEQWNGVEKVR 422 (498)
Q Consensus 396 ~-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (498)
| .+...|..++..|.+.|+++.|....
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4 56667889999999999999998543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.2e-16 Score=146.59 Aligned_cols=264 Identities=13% Similarity=-0.012 Sum_probs=185.5
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHc
Q 010881 87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166 (498)
Q Consensus 87 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 166 (498)
+...+..+...+...|++++|..+++++.+..+. +...+..+..++...|++++|.+.+++....
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-------------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------
Confidence 3445666777777888888888888888776543 5566666677777777777776666543211
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH--------------HH--H
Q 010881 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL--------------TA--C 230 (498)
Q Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll--------------~~--~ 230 (498)
...+..++..+...+...|++++|...++++.+.. |+.......+ .. +
T Consensus 85 --------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 85 --------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCT
T ss_pred --------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 11234455556666666666666666666665532 2211111111 22 5
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 010881 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIE 307 (498)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 307 (498)
...|++++|...++.+.+.. +.+..++..+...|...|++++|...++++.+ .+..++..+...+...|++++|..
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 66778888888888887765 55677888888888888888888888887653 356788888888999999999999
Q ss_pred HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHH
Q 010881 308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-------------DNYVLGALLN 373 (498)
Q Consensus 308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~ 373 (498)
.++++.+. .|+ +..++..+..++...|++++|...++++ ...| +..+|..+..
T Consensus 228 ~~~~a~~~--~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 228 AYNRALDI--NPG-----------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHHHHHc--CCC-----------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 99988774 233 5778888999999999999999999887 2223 3678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 010881 374 ACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
++...|++++|..+++++++..
T Consensus 295 ~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHTTCHHHHHHHTTCCSHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhc
Confidence 9999999999999888766543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.1e-15 Score=146.67 Aligned_cols=362 Identities=9% Similarity=-0.049 Sum_probs=234.7
Q ss_pred CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-----------C-CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-
Q 010881 16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-----------Y-RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS- 82 (498)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~- 82 (498)
......+||.|..+|... |+.++|.+.|++.. . ....+|+.+..+|...|++++|...|++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~--G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLK--GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp ---CCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 344567899999999999 99999999997642 1 23568999999999999999999999987652
Q ss_pred ----C-CCC-CcchHHHHHHHHHc--cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCChhhHHHHhhccC-
Q 010881 83 ----D-FLP-NNYTFSFILRACAD--TSCLFVGLICHAQVIRLGWESYDFVLNGLLHL---YATCNCMDPARKLFDMSV- 150 (498)
Q Consensus 83 ----~-~~p-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~- 150 (498)
+ ..+ ...++.....++.. .+++++|...|++.++..+. +...+..+..+ +...++.++|.+.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1 111 22345544444444 45789999999999998754 44555555444 445678888998887754
Q ss_pred --CCChhhHHHHHHHHHc----cCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-H
Q 010881 151 --NRDVISWTSLINGYAK----SGQISIARQMFDKMP---EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-H 220 (498)
Q Consensus 151 --~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~ 220 (498)
+.+..++..+...+.. .+++++|.+.+++.. ..+..++..+...|...|++++|...|++..+. .|+ .
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 281 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA 281 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH
Confidence 3355666666655554 467788999988764 346778899999999999999999999999885 444 4
Q ss_pred HHHHHHHHHHhc-------------------cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 221 AGIVGALTACAF-------------------LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 221 ~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
.++..+...+.. .+..+.|...++...+.. +.+..++..+...|...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 455555444322 123567778888877775 667788889999999999999999999987
Q ss_pred CC--CChh----HHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 010881 282 PN--RDVF----AYTSLIS-GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK 354 (498)
Q Consensus 282 ~~--~~~~----~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 354 (498)
.+ ++.. .+..+.. .+...|+.++|+..|.+..+. .|+ ....... ...+..
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~------------~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQK------------SREKEKM---------KDKLQK 417 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCC------------CHHHHHH---------HHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc------------cHHHHHH---------HHHHHH
Confidence 53 3322 2333332 345679999999999998874 333 2222111 223344
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 355 VVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 355 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
++++. ...| +..+|..+...|...|++++|++.|+++++.+|..+.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44443 2234 6788999999999999999999999999999988877665443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2e-15 Score=134.90 Aligned_cols=223 Identities=13% Similarity=0.021 Sum_probs=183.8
Q ss_pred hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCC----hhHH
Q 010881 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI--ELD----IILG 258 (498)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 258 (498)
...+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|...+..+.+..- .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778888888888888888888888776 7777888888888888888888888888776431 111 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881 259 TAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336 (498)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~ 336 (498)
..+..+|...|++++|...|+++.+ ++ ...+...|++++|...++++... .|+ +...+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~-----------~~~~~ 142 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPE-----------KAEEA 142 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHH-----------HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--Ccc-----------hHHHH
Confidence 8888899999999999999888764 33 23566678899999999998874 233 57788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881 337 GCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (498)
..+...+...|++++|...+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.++...|+
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999988 3334 688899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhCC
Q 010881 415 WNGVEKVRRGMEDNE 429 (498)
Q Consensus 415 ~~~a~~~~~~m~~~~ 429 (498)
+++|...+++..+..
T Consensus 223 ~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 223 YASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887643
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=1.4e-15 Score=132.26 Aligned_cols=208 Identities=9% Similarity=-0.044 Sum_probs=132.1
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455555566666666666666666655432 2233344444444555555555555555554443 333334444444
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881 264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343 (498)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 343 (498)
+|...+. .. .. .+...|++++|+..|++..+. .|+ +...+..+..++
T Consensus 82 ~~~~~~~---------~~--~~---------~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~~~~~lg~~~ 128 (217)
T 2pl2_A 82 AYVALYR---------QA--ED---------RERGKGYLEQALSVLKDAERV--NPR-----------YAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHHH---------TC--SS---------HHHHHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHH
T ss_pred HHHHhhh---------hh--hh---------hcccccCHHHHHHHHHHHHHh--Ccc-----------cHHHHHHHHHHH
Confidence 3332210 00 00 011229999999999999884 454 588999999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHH
Q 010881 344 GRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (498)
...|++++|+..|++. .+..+...+..+..+|...|++++|+..|+++++.+|+++.++..++.++...|++++|.+.+
T Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------
T ss_pred HHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999998 222788999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 010881 423 RGME 426 (498)
Q Consensus 423 ~~m~ 426 (498)
++..
T Consensus 209 ~~~~ 212 (217)
T 2pl2_A 209 ALEH 212 (217)
T ss_dssp ----
T ss_pred HHHh
Confidence 7654
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=164.98 Aligned_cols=147 Identities=12% Similarity=0.122 Sum_probs=121.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881 154 VISWTSLINGYAKSGQISIARQMFDKMP-------EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA 226 (498)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 226 (498)
..+||+||.+|++.|++++|.++|++|. .||++|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997653 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcC
Q 010881 227 LTACAFLGAL-DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHD 300 (498)
Q Consensus 227 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~ 300 (498)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998777665555554443333321 1334444455555443
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=164.96 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=122.6
Q ss_pred hhHHHHHHHHhhcCCCCChhHHHHHhhhcC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHH
Q 010881 20 PFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-------YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92 (498)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 92 (498)
..+||+||++|++. |++++|.++|+.|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 127 ~~TynaLIdglcK~--G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLT--DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 36899999999999 99999999997753 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-----ChhhHHHHHHHHHc
Q 010881 93 FILRACADTSCL-FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-----DVISWTSLINGYAK 166 (498)
Q Consensus 93 ~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~ 166 (498)
++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++......+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999998777765555555554333221 13344445555554
Q ss_pred cC
Q 010881 167 SG 168 (498)
Q Consensus 167 ~~ 168 (498)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=2.2e-14 Score=129.44 Aligned_cols=244 Identities=9% Similarity=-0.068 Sum_probs=185.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 010881 156 SWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTAC 230 (498)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~ 230 (498)
.+......+...|++++|+..|++..+ | +...+..+..++...|++++|+..+++..+.+..|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666677777777777776542 2 455788888888999999999999999887432222 33477888888
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 010881 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIE 307 (498)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 307 (498)
...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|++..+ .+...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888875 56778899999999999999999999998875 356677777734445569999999
Q ss_pred HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHH
Q 010881 308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM---LEAAKKVVREM----PIEPD------NYVLGALLNA 374 (498)
Q Consensus 308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~ 374 (498)
.|+++.+. .|+ +...+..+..++...|+ +++|...+++. .-.|+ ..+|..+...
T Consensus 164 ~~~~a~~~--~p~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 164 SFVKVLEL--KPN-----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHHHHHH--STT-----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--Ccc-----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 99999884 343 47788888888888887 77788887776 22243 2577788889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413 (498)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (498)
|...|++++|.+.++++++.+|+++.+...+.......+
T Consensus 231 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999999999999887777766555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.6e-14 Score=130.39 Aligned_cols=237 Identities=8% Similarity=-0.158 Sum_probs=181.6
Q ss_pred cCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 010881 167 SGQISIARQMFDKMPEK-------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239 (498)
Q Consensus 167 ~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 239 (498)
.|++++|+..|+++.+. +..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 36677777777766542 45677788888889999999999999888763 33567888888888899999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV 317 (498)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 317 (498)
...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 99999888875 55678888999999999999999999988764 444444445555577799999999998887752
Q ss_pred CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881 318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-----NYVLGALLNACRVHGDVDLGKETVESL 391 (498)
Q Consensus 318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 391 (498)
| ++...+ .++..+...++.++|...+++. ...|+ ..++..+...|...|++++|...++++
T Consensus 175 -~-----------~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 175 -D-----------KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp -C-----------CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -C-----------cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 233344 3777788888899999999887 43342 578888999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHhHhcCCcchHHHHH
Q 010881 392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVR 422 (498)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 422 (498)
++.+|++... ...++...|++++|++.+
T Consensus 242 l~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999977543 366778889999888776
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=2.8e-14 Score=138.47 Aligned_cols=341 Identities=11% Similarity=-0.023 Sum_probs=178.8
Q ss_pred HHHHhhcCCCCChhHHHHHhhhcCC-CCcchHHHHHHHHHhCCCc---hHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 010881 26 IIGFCSASDIGDLSHGYRLFVCLQY-RTTFIWNTMIRGFAEKNEP---IKAFALYKQMLRSDFLPNNYTFSFILRACADT 101 (498)
Q Consensus 26 l~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 101 (498)
+...+.+. |++++|.+.|+...+ .++.++..|...|...|++ ++|+..|++..+. +...+..+...+...
T Consensus 9 la~~~~~~--g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKR--GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 45556666 889999999887653 4566677777777777887 8899998888763 455555666544444
Q ss_pred C-----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh---HHHHhhccC-CCChhhHHHHHHHHHccC----
Q 010881 102 S-----CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP---ARKLFDMSV-NRDVISWTSLINGYAKSG---- 168 (498)
Q Consensus 102 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~-~~~~~~~~~li~~~~~~~---- 168 (498)
+ ++++|...+++..+.|.. ..+..|...|...+..+. +.+.+.... ..++..+..+...|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 4 678888899888887643 356667777776654433 333333322 224556666666666665
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhCC---CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CChHHHHH
Q 010881 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVD---LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL----GALDQGRW 241 (498)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~ 241 (498)
+.+.+..+++.....++..+..|...|...| ++++|+..|++..+.| .++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4455555666666556667777777777777 7777777777777665 33444334444444433 46666666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHH-H--HhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcC-----ChHHHHHHHHHH
Q 010881 242 IHAYVDRNGIELDIILGTAIIDM-Y--AKCGCIETACSVFDSMPN-RDVFAYTSLISGLANHD-----QSASAIELFMRM 312 (498)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m 312 (498)
.|+... .| +...+..|... | ...+++++|...|++..+ .+...+..|...|. .| ++++|..+|++.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 666655 22 44445555554 2 345566666666665443 24445555555554 33 566666666555
Q ss_pred HHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 010881 313 QLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREMPIEPDNYVLGALLNACRV----HGDVDLG 384 (498)
Q Consensus 313 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 384 (498)
. .| +...+..|...|.. ..++++|...|++.--.-+......|...|.. ..+.++|
T Consensus 314 a-~g---------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 314 V-GR---------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp T-TT---------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred h-CC---------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 4 22 34555555555544 23566666666555101122233334444432 2355666
Q ss_pred HHHHHHHHhcCCC
Q 010881 385 KETVESLVERSLD 397 (498)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (498)
..+|+++.+.++.
T Consensus 378 ~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 378 YVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHTTCCH
T ss_pred HHHHHHHHHCCCH
Confidence 6666666555543
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.2e-14 Score=125.14 Aligned_cols=229 Identities=13% Similarity=0.022 Sum_probs=168.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF--RPN----HAGIVGALT 228 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~ll~ 228 (498)
+..+...+...|++++|...|++..+ .+...+..+..++...|++++|...+++..+... .|+ ...+..+..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 34444444445555555555443321 4556677777777777888888777777765321 112 466777777
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHH
Q 010881 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASA 305 (498)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 305 (498)
.+...|++++|...++.+.+.. |+ ...+...|++++|...++.+... +...+..+...+...|++++|
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 7778888888888888777653 33 23466677888888888876542 456788888899999999999
Q ss_pred HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 010881 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDL 383 (498)
Q Consensus 306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 383 (498)
...++++.+. .|+ +..++..+..++...|++++|...+++. ...| +...|..+...+...|++++
T Consensus 159 ~~~~~~a~~~--~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 159 VKAYTEMIKR--APE-----------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhc--Ccc-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999875 233 5788999999999999999999999988 3344 68889999999999999999
Q ss_pred HHHHHHHHHhcC------CCCchHHHHHHH
Q 010881 384 GKETVESLVERS------LDHEGVHVLLSN 407 (498)
Q Consensus 384 A~~~~~~~~~~~------~~~~~~~~~l~~ 407 (498)
|...++++++.. |.+...+..+..
T Consensus 226 A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 226 ALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999999988 777666655544
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=4.2e-14 Score=137.23 Aligned_cols=323 Identities=15% Similarity=0.023 Sum_probs=154.7
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCh---hHHHHHhhhcCCCCcchHHHHHHHHHhCC-----CchHHHH
Q 010881 3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDL---SHGYRLFVCLQYRTTFIWNTMIRGFAEKN-----EPIKAFA 74 (498)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~ 74 (498)
+|.+++..+.+.| ++..+..|..+|... |+. ++|...|+.....++..+..+...+...+ ++++|+.
T Consensus 21 ~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~ 95 (452)
T 3e4b_A 21 TAQQNYQQLAELG---YSEAQVGLADIQVGT--RDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAES 95 (452)
T ss_dssp HHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 4555566665555 233334444555444 555 66666666655445555665555444443 5566666
Q ss_pred HHHHhHHCCCCCCcchHHHHHHHHHccCCcH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh----hhHHHHhh
Q 010881 75 LYKQMLRSDFLPNNYTFSFILRACADTSCLF---VGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM----DPARKLFD 147 (498)
Q Consensus 75 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~ 147 (498)
.|++..+.|. ...+..|...|...+..+ .+.+.+......| +......|...|...+.+ +.+..+++
T Consensus 96 ~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~ 169 (452)
T 3e4b_A 96 LLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICK 169 (452)
T ss_dssp HHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 6666666442 224445555554443322 2333344443333 233444555555555533 33344444
Q ss_pred ccCCCChhhHHHHHHHHHccC---CHHHHHHHHhhCCC---CChhHHHHHHHHHHhC----CCHhHHHHHHHHHHHcCCC
Q 010881 148 MSVNRDVISWTSLINGYAKSG---QISIARQMFDKMPE---KNAVSWSAMINGYVQV----DLFKEALEHFNYMQLCGFR 217 (498)
Q Consensus 148 ~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~ 217 (498)
.....++.++..|...|.+.| +.++|++.|++..+ ++...+..+...|... +++++|+..|++.. .|
T Consensus 170 ~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-- 246 (452)
T 3e4b_A 170 AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-- 246 (452)
T ss_dssp HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG--
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC--
Confidence 445555556666666666666 66666666665532 2233334555555443 56666666666655 22
Q ss_pred CCHHHHHHHHHH-H--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCCCCChhHH
Q 010881 218 PNHAGIVGALTA-C--AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG-----CIETACSVFDSMPNRDVFAY 289 (498)
Q Consensus 218 p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~ 289 (498)
+...+..+... + ...+++++|...|+...+.| +...+..|...|. .| ++++|...|++....++..+
T Consensus 247 -~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~ 321 (452)
T 3e4b_A 247 -YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAAD 321 (452)
T ss_dssp -STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHH
T ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHH
Confidence 22333333333 2 34566666666666666555 4455555555555 33 66666666666653344555
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC
Q 010881 290 TSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREM 359 (498)
Q Consensus 290 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 359 (498)
..|...|.. ..+.++|..+|++..+.| +......|..+|.. ..+.++|...|+..
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG---------------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---------------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---------------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 555555544 236666666666665544 23445555555543 34566666666554
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=5.3e-13 Score=120.45 Aligned_cols=223 Identities=10% Similarity=-0.077 Sum_probs=167.1
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF----LGALDQGRWIHAYVDRNGIELDIILGT 259 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (498)
+..++..+...+...|++++|...|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777777777777777777762 234556666666666 777777777777777665 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881 260 AIIDMYAK----CGCIETACSVFDSMPN-RDVFAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330 (498)
Q Consensus 260 ~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 330 (498)
.+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------- 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------------- 144 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence 77777777 7888888888776654 356677777778887 888888888888887754
Q ss_pred CChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchH
Q 010881 331 PGVQHYGCLVDLLGR----AGMLEAAKKVVREM-PIEPDNYVLGALLNACRV----HGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
+...+..+...|.. .+++++|...|++. .. .+...+..+...|.. .+++++|+..++++.+.+| +..
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a 220 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGG 220 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHH
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHH
Confidence 35677777888877 88888888888877 22 356677778888888 8888899988888888766 557
Q ss_pred HHHHHHHhHh----cCCcchHHHHHHhhhhCCc
Q 010881 402 HVLLSNIYAS----TEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 402 ~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 430 (498)
+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888 8888889888888877654
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=3.9e-13 Score=119.65 Aligned_cols=203 Identities=10% Similarity=-0.094 Sum_probs=159.5
Q ss_pred hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264 (498)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (498)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567778888888999999999999888753 3456677778888888888888888888888775 5567788888888
Q ss_pred HHhcCCHHHHHHHHhhCCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881 265 YAKCGCIETACSVFDSMPN----R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l 339 (498)
|...|++++|...|+++.. | +...+..+...+...|++++|...++++.+.. |+ +...+..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~-----------~~~~~~~l 181 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RN-----------QPSVALEM 181 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-----------CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cc-----------cHHHHHHH
Confidence 8888888888888887755 2 34567778888888888888888888887742 32 46778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
...+...|++++|...++++ ...| +...+..+...+...|++++|.+.++++++..|+++...
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 88888888888888888887 4344 666777778888888888888888888888888876543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.2e-13 Score=121.86 Aligned_cols=225 Identities=10% Similarity=-0.094 Sum_probs=177.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 227 (498)
++.++..+...+...|++++|...|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3445555666666666666666666665544 45667777778888 888888888888888765 566777777
Q ss_pred HHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh
Q 010881 228 TACAF----LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK----CGCIETACSVFDSMPN-RDVFAYTSLISGLAN 298 (498)
Q Consensus 228 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 298 (498)
..+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 77777 888888888888888765 66778888888888 8899999988887664 356677788888887
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHH
Q 010881 299 ----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREM-PIEPDNYVLG 369 (498)
Q Consensus 299 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~ 369 (498)
.+++++|...|++..+.+ +...+..+..+|.. .+++++|...|++. ...| ...+.
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~ 222 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCF 222 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHH
Confidence 899999999999988764 46788889999999 99999999999987 3333 67788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 010881 370 ALLNACRV----HGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 370 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
.+...|.. .+++++|.+.|+++++.+|++.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 88888888 9999999999999999988754
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=3.6e-14 Score=125.51 Aligned_cols=211 Identities=10% Similarity=0.000 Sum_probs=134.7
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34556666777777778888888777777642 3345566666777777777777777777777664 445667777777
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881 264 MYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340 (498)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 340 (498)
.|...|++++|...++++.+ .+...+..+...+...|++++|...++++.+. .|+ +...+..+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~ 166 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NEN-----------DTEARFQFG 166 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCc-----------cHHHHHHHH
Confidence 77777777777777776542 35566777777777888888888888877764 222 466777777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 341 DLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
..+...|++++|...++++ ...| +..++..+...|...|++++|...++++++..|+++..+..+....
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 8888888888888888776 2233 5667777777888888888888888888888888776666554443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.1e-13 Score=123.16 Aligned_cols=198 Identities=7% Similarity=-0.053 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 010881 220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGL 296 (498)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 296 (498)
...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3566777788899999999999999998875 66788899999999999999999999998763 4677899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010881 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNA 374 (498)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 374 (498)
...|++++|..+++++...+..|+ +...+..+..++...|++++|...++++ ...| +...+..+...
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPE-----------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 999999999999999987333333 5788899999999999999999999998 3334 68889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
+...|++++|...++++++..|++...+..++.++...|++++|.++++++.+..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999997654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=6.4e-14 Score=131.87 Aligned_cols=228 Identities=9% Similarity=-0.046 Sum_probs=191.4
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA-LDQGRWIHAYVDRNGIELDIILGTAII 262 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (498)
+...|+.+...+.+.|++++|+..|++..+.. +-+...|..+...+...|+ +++|...++.+.+.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567788888888999999999999988753 2345677788888888886 999999999998886 66788999999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881 263 DMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l 339 (498)
.+|...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .|+ +...|+.+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~-----------~~~a~~~l 240 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVR-----------NNSVWNQR 240 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT-----------CHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC-----------CHHHHHHH
Confidence 999999999999999998874 47789999999999999999999999999985 444 68899999
Q ss_pred HHHHhh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 340 VDLLGR-AGMLEAA-----KKVVREM-PIEP-DNYVLGALLNACRVHG--DVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 340 ~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
..++.. .|..++| +..+++. .+.| +...|..+...+...| ++++|++.+.++ +.+|+++..+..++.+|
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHH
Confidence 999999 6665777 4777776 4556 6788988888898888 689999999998 88899998999999999
Q ss_pred HhcC---------CcchHHHHHHhh-hh
Q 010881 410 ASTE---------QWNGVEKVRRGM-ED 427 (498)
Q Consensus 410 ~~~g---------~~~~a~~~~~~m-~~ 427 (498)
.+.| .+++|.++++++ .+
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 9875 358899999888 44
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=2.5e-13 Score=118.39 Aligned_cols=199 Identities=8% Similarity=-0.037 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666667777777777777777766542 2234455555555666666666666666655543 334444455555
Q ss_pred HHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881 264 MYAKC-GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342 (498)
Q Consensus 264 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 342 (498)
.|... |++++|...++ ++.+.+..|+ +...+..+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~-------------------------------~~~~~~~~~~-----------~~~~~~~l~~~ 122 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFD-------------------------------KALADPTYPT-----------PYIANLNKGIC 122 (225)
T ss_dssp HHHTTTCCHHHHHHHHH-------------------------------HHHTSTTCSC-----------HHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHH-------------------------------HHHcCcCCcc-----------hHHHHHHHHHH
Confidence 55555 55555555544 4443111111 23444444444
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHhHhcCCcchHH
Q 010881 343 LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL-DHEGVHVLLSNIYASTEQWNGVE 419 (498)
Q Consensus 343 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 419 (498)
+...|++++|...++++ ...| +...+..+...+...|++++|...++++++..| +++..+..++..+...|+.++|.
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 55555555555554444 1122 344444445555555555555555555555555 44444444444445555555555
Q ss_pred HHHHhhh
Q 010881 420 KVRRGME 426 (498)
Q Consensus 420 ~~~~~m~ 426 (498)
.+++.+.
T Consensus 203 ~~~~~~~ 209 (225)
T 2vq2_A 203 EYEAQLQ 209 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=8.6e-13 Score=114.97 Aligned_cols=208 Identities=13% Similarity=-0.045 Sum_probs=153.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 229 (498)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 466788899999999999999999998753 367789999999999999999999999998863 3466788889999
Q ss_pred Hhcc-CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 010881 230 CAFL-GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL 308 (498)
Q Consensus 230 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 308 (498)
+... |++++|...++.+.+.+..|+ +...+..+...+...|++++|...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPT------------------------------PYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSC------------------------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcc------------------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999 999999999999887221221 122333444455555556666666
Q ss_pred HHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 010881 309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE--PDNYVLGALLNACRVHGDVDLGK 385 (498)
Q Consensus 309 ~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~ 385 (498)
++++.+. .|+ +...+..+..++...|++++|...++++ ... .+...+..+...+...|+.+.|.
T Consensus 136 ~~~~~~~--~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 136 LKRSLAA--QPQ-----------FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHHHHH--STT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHh--CCC-----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 6665553 222 3566777777777777777777777776 222 35666666777778888888888
Q ss_pred HHHHHHHhcCCCCchHHHH
Q 010881 386 ETVESLVERSLDHEGVHVL 404 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~ 404 (498)
.+++.+.+..|+++.....
T Consensus 203 ~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 8888888888887755443
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.6e-13 Score=129.11 Aligned_cols=244 Identities=11% Similarity=0.020 Sum_probs=198.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCC-HhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881 154 VISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDL-FKEALEHFNYMQLCGFRPNHAGIVGALTA 229 (498)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 229 (498)
..+|..+...+.+.|++++|+..|++... | +..+|+.+..++...|+ +++|+..|+++.+.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35677777778888888888888887752 3 57788888888889996 999999999988853 2356678888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHh-cCChHHH
Q 010881 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLAN-HDQSASA 305 (498)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~~~~~~a 305 (498)
+...|++++|...++.+.+.. +-+...|..+..++...|++++|+..|+++.+ .+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 888899999999999998886 67788899999999999999999999998874 467789999999988 6665777
Q ss_pred -----HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 010881 306 -----IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG--MLEAAKKVVREMPIEP-DNYVLGALLNACRV 377 (498)
Q Consensus 306 -----~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 377 (498)
+..|++.+.. .|+ +...|..+..++...| ++++|.+.+.++...| +...+..+...|..
T Consensus 255 ~~~~el~~~~~Al~l--~P~-----------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPH-----------NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 5888888874 455 5889999999999988 6899999998884445 67788888888888
Q ss_pred cC---------CHHHHHHHHHHH-HhcCCCCchHHHHHHHHhHhc
Q 010881 378 HG---------DVDLGKETVESL-VERSLDHEGVHVLLSNIYAST 412 (498)
Q Consensus 378 ~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 412 (498)
.| .+++|+++|+++ ++.+|.....|..++..+...
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 64 358999999999 899999988888887766544
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.2e-13 Score=132.15 Aligned_cols=295 Identities=13% Similarity=-0.021 Sum_probs=181.2
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHcc
Q 010881 91 FSFILRACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS 167 (498)
Q Consensus 91 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 167 (498)
+......+...|++++|...++++++..+... ..++..+...+...|++++|...+++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------ 73 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------------ 73 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------
Confidence 34444555666666666666666666543211 234555666666666666666665432
Q ss_pred CCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC-----
Q 010881 168 GQISIARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPN----HAGIVGALTACAFLGA----- 235 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~----- 235 (498)
..+......+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 74 ------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 147 (406)
T 3sf4_A 74 ------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 147 (406)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred ------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccc
Confidence 1111111111 123344455555555555555555555443200 001 2244445555555555
Q ss_pred ---------------hHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----h
Q 010881 236 ---------------LDQGRWIHAYVDRN----GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----V 286 (498)
Q Consensus 236 ---------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~ 286 (498)
+++|...+....+. +. +....++..+...|...|++++|...+++..+ ++ .
T Consensus 148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 66666555554332 11 11234566777788888888888888776653 11 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM----PI 361 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 361 (498)
.++..+...|...|++++|...+++..... |+ .+..+ ...++..+...|...|++++|...+++. +-
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQ------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh------CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 378888888999999999999998887531 10 00011 2567888999999999999999999887 11
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchHHHHHHHHhHhcCCcch
Q 010881 362 EPD----NYVLGALLNACRVHGDVDLGKETVESLVERSL------DHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 362 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~ 417 (498)
.++ ..++..+...|...|++++|...++++++..+ ....++..++.++...|+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 122 56788888999999999999999999988632 234567788888988887754
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=1.6e-13 Score=123.78 Aligned_cols=230 Identities=11% Similarity=-0.058 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHH
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD--IILGTAIID 263 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 263 (498)
..+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+....++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445567788999999999999999999863 22344778888899999999999999999988432222 234888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881 264 MYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340 (498)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 340 (498)
+|...|++++|...|+++.+ .+..+|..+...|...|++++|...|++..+. .|+ +...+..+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~l~ 149 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT-----------DPKVFYELG 149 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC-----------CHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC-----------cHHHHHHHH
Confidence 99999999999999998764 46678999999999999999999999998764 444 577888888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chHHHHHHH
Q 010881 341 DLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGD---VDLGKETVESLVERS---LDH-----EGVHVLLSN 407 (498)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~ 407 (498)
..+...+++++|...|+++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 229 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 4444556999999999998 4445 57788888888888888 888999999999865 442 146888999
Q ss_pred HhHhcCCcchHHHHHHhhhhCC
Q 010881 408 IYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 408 ~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
+|...|++++|.+.+++..+..
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999997644
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1.9e-13 Score=118.68 Aligned_cols=194 Identities=14% Similarity=0.032 Sum_probs=132.3
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010881 151 NRDVISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL 227 (498)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 227 (498)
+++...+..+...+.+.|++++|...|++..+ | +...+..+..++.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35677888999999999999999999998754 3 67889999999999999999999999999863 33456777788
Q ss_pred HHHhcc-----------CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHH
Q 010881 228 TACAFL-----------GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLIS 294 (498)
Q Consensus 228 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 294 (498)
..+... |++++|...++...+.. +.+...+..+..+|...|++++|...|++..+ .+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 888877 77777777777777664 44566666677777777777777776665432 45556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
.|...|++++|...|++..+. .|+ +...+..+..++...|++++|...+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APK-----------DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666677777777777666653 233 4566666666666666666666666543
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=9.8e-14 Score=122.71 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 010881 218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLIS 294 (498)
Q Consensus 218 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 294 (498)
.....+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345567777788889999999999999998765 66788899999999999999999999998763 46778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL 372 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 372 (498)
.+...|++++|...++++.+.. |+ +...+..+...+...|++++|...++++ ...| +...+..+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--ME-----------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CC-----------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CC-----------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 9999999999999999998852 33 5788999999999999999999999998 3334 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
..+...|++++|...++++++..|++..++..++.++...|++++|...++++.+..
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999987643
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=2.9e-13 Score=122.10 Aligned_cols=243 Identities=12% Similarity=-0.078 Sum_probs=161.6
Q ss_pred hCCCchHHHHHHHHhHHCCCC--C-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh
Q 010881 65 EKNEPIKAFALYKQMLRSDFL--P-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141 (498)
Q Consensus 65 ~~~~~~~A~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 141 (498)
..|++++|+..|+++.+.... | +..++..+...+...|++++|...++++++..+. +..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 456677777777777664211 1 3445556666666667777777777666665432 44555555555555555555
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH
Q 010881 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221 (498)
Q Consensus 142 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 221 (498)
|.+.|++... . ...+..++..+...+...|++++|...|+++.+. .|+..
T Consensus 96 A~~~~~~al~------------------------~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 145 (275)
T 1xnf_A 96 AYEAFDSVLE------------------------L----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDP 145 (275)
T ss_dssp HHHHHHHHHH------------------------H----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHh------------------------c----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCh
Confidence 5555443211 0 1225677888888888889999999999888875 45555
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHH
Q 010881 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD-------VFAYTSLIS 294 (498)
Q Consensus 222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~ 294 (498)
.....+..+...|++++|...+....... +++...+. ++..+...++.++|...++.....+ ..++..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 55555556677789999999998777764 44555444 6777778888899999998877632 467888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 010881 295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV 356 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 356 (498)
.|...|++++|...|++.... .|+ + +.....++...|++++|.+.+
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~--~p~-----------~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVAN--NVH-----------N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CCT-----------T---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHhC--Cch-----------h---HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999874 233 2 223355677778888887665
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=1.7e-13 Score=133.76 Aligned_cols=211 Identities=6% Similarity=-0.052 Sum_probs=175.0
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 010881 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL-DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD 279 (498)
Q Consensus 201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 279 (498)
+++++..+++.... .+.+...+..+...+...|++ ++|...++.+.+.. +.+..++..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666655443 233556677777777778888 88888888877765 5567788888888889999999999888
Q ss_pred hCCC--CChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc--
Q 010881 280 SMPN--RDVFAYTSLISGLANH---------DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-- 346 (498)
Q Consensus 280 ~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 346 (498)
+..+ |+...+..+...+... |++++|+..|++..+. .|+ +...|..+..+|...
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL-----------DGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHHHH
Confidence 7764 6667788888888888 9999999999999885 344 588999999999998
Q ss_pred ------CCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881 347 ------GMLEAAKKVVREM-PIEP----DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415 (498)
Q Consensus 347 ------g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (498)
|++++|...|++. ...| +...|..+..+|...|++++|.+.|+++++.+|+++.++..++.++...|++
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998 4455 7889999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhh
Q 010881 416 NGVEKVRRGME 426 (498)
Q Consensus 416 ~~a~~~~~~m~ 426 (498)
++|++.+.++.
T Consensus 309 ~eAi~~~~~~~ 319 (474)
T 4abn_A 309 TSLLESKGKTK 319 (474)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHhcccc
Confidence 99998765553
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=8.8e-14 Score=133.61 Aligned_cols=198 Identities=11% Similarity=-0.041 Sum_probs=133.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCChhHHHHHHHHHHhcCC-----------------HHHHHHHHhh
Q 010881 223 IVGALTACAFLGALDQGRWIHAYVDRN----G-IELDIILGTAIIDMYAKCGC-----------------IETACSVFDS 280 (498)
Q Consensus 223 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 280 (498)
+..+...+...|++++|...+..+.+. + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 334444444455555555554443332 1 01123355566666666666 6666666655
Q ss_pred CCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC-CCChHHHHHHHHHHhhcCCHH
Q 010881 281 MPN-----R----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI-EPGVQHYGCLVDLLGRAGMLE 350 (498)
Q Consensus 281 ~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 350 (498)
..+ . ...++..+...|...|++++|...+++..+.. |+ .+. .....++..+..+|...|+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~------~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--RE------FGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH------HTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh------cCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 432 1 23467778888888999999999888877631 10 000 001347888999999999999
Q ss_pred HHHHHHHhC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHHHHHHhHhcCCcc
Q 010881 351 AAKKVVREM-PI---EP----DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH------EGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 351 ~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 416 (498)
+|...+++. .. .. ...++..+...|...|++++|...++++++..+.. ..++..++.+|...|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 999999877 11 11 25677888889999999999999999998864332 346888999999999999
Q ss_pred hHHHHHHhhhhC
Q 010881 417 GVEKVRRGMEDN 428 (498)
Q Consensus 417 ~a~~~~~~m~~~ 428 (498)
+|...+++..+.
T Consensus 361 ~A~~~~~~al~~ 372 (411)
T 4a1s_A 361 RALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=7.7e-13 Score=111.58 Aligned_cols=163 Identities=13% Similarity=0.020 Sum_probs=131.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881 254 DIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330 (498)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 330 (498)
++.+|..+..+|...|++++|...|++..+ .+..+|..+...|...|++++|...+.+.... .|+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~---------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTT---------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cch----------
Confidence 556777788888888888888888877653 35667888888888888888888888888764 232
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
+...+..+...+...++++.|...+.+. ...| +...+..+...+...|++++|++.|+++++.+|.++.++..++.+
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 72 -SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA 150 (184)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 4677778888888889999998888887 3344 677888888889999999999999999999999998889999999
Q ss_pred hHhcCCcchHHHHHHhhhhCC
Q 010881 409 YASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 409 ~~~~g~~~~a~~~~~~m~~~~ 429 (498)
|.+.|++++|++.|++..+..
T Consensus 151 ~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHhCC
Confidence 999999999999998887654
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=2.4e-13 Score=126.25 Aligned_cols=235 Identities=13% Similarity=0.004 Sum_probs=152.0
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCC----hh
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGI-ELD----II 256 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 256 (498)
.+..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+....+..- .++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3445555555555555555555554321 1111 123444455555555666666665555443210 011 23
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHH
Q 010881 257 LGTAIIDMYAKCGC--------------------IETACSVFDSMPN-----R----DVFAYTSLISGLANHDQSASAIE 307 (498)
Q Consensus 257 ~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~ 307 (498)
++..+...|...|+ +++|...+++... + ...++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55666666667777 7777666665432 1 23467777888888999999999
Q ss_pred HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcC
Q 010881 308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEPD----NYVLGALLNACRVHG 379 (498)
Q Consensus 308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g 379 (498)
.+++..+...... .......++..+...+...|++++|...+++. +-.++ ..++..+...+...|
T Consensus 205 ~~~~a~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 205 AHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp HHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 8888765310000 00112447888899999999999999999876 11122 557778888999999
Q ss_pred CHHHHHHHHHHHHhcCCCC------chHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 380 DVDLGKETVESLVERSLDH------EGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
++++|...++++++..+.. ..++..++.+|...|++++|...+++..+.
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999998865432 346778999999999999999999988764
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=4e-13 Score=128.54 Aligned_cols=265 Identities=13% Similarity=0.019 Sum_probs=194.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCCC-HHHHH
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPE--K-N----AVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRPN-HAGIV 224 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~ 224 (498)
+......+...|++++|...|++..+ | + ...+..+...+...|++++|...+++.... +..|. ..++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33444455555666666665555431 2 2 346778888899999999999998886542 22222 44677
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCC-CCC----hhHHHHHHHHHHhcCC--------------------HHHHHHHHh
Q 010881 225 GALTACAFLGALDQGRWIHAYVDRNGI-ELD----IILGTAIIDMYAKCGC--------------------IETACSVFD 279 (498)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~ 279 (498)
.+...+...|++++|...+..+.+..- .++ ..++..+...|...|+ +++|...++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 788888999999999999988765420 011 3477888899999999 999998887
Q ss_pred hCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881 280 SMPN-----R----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE 350 (498)
Q Consensus 280 ~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 350 (498)
+... . ...++..+...|...|++++|...+++..+...... .......++..+...|...|+++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHcCChH
Confidence 6542 1 234788888999999999999999999876310000 00112458889999999999999
Q ss_pred HHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHHHHHHhHhcCCcc
Q 010881 351 AAKKVVREM----PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDH------EGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 351 ~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 416 (498)
+|...+++. +-.++ ..++..+...|...|++++|...++++++..+.. ..++..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887 11122 5678888899999999999999999999865432 456788999999999999
Q ss_pred hHHHHHHhhhhC
Q 010881 417 GVEKVRRGMEDN 428 (498)
Q Consensus 417 ~a~~~~~~m~~~ 428 (498)
+|.+.+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=9.8e-13 Score=126.24 Aligned_cols=274 Identities=14% Similarity=-0.005 Sum_probs=172.3
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCC
Q 010881 93 FILRACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169 (498)
Q Consensus 93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (498)
.+...+...|++++|...++++++..+... ..++..+...|...|++++|.+.+++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------------- 112 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-------------------- 112 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------------
Confidence 344455666667777776666666543311 134555666666666666666665432
Q ss_pred HHHHHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCC-------
Q 010881 170 ISIARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGA------- 235 (498)
Q Consensus 170 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~------- 235 (498)
.++.+....+ ...++..+...|...|++++|...|++..+. +-.| ...++..+...+...|+
T Consensus 113 ----l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 113 ----LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ----HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence 1222221111 2334555555666666666666666555432 1111 12345555556666666
Q ss_pred ----------hHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHH
Q 010881 236 ----------LDQGRWIHAYVDRN----GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTS 291 (498)
Q Consensus 236 ----------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 291 (498)
+++|...+.+..+. +. +....++..+...|...|++++|...|++..+ .+ ..++..
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66666666554332 11 11234667778888888888888888887654 12 237788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-
Q 010881 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEP- 363 (498)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p- 363 (498)
+...|...|++++|...+++......... .......++..+..+|...|++++|...+++. +..+
T Consensus 269 la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 269 LGNSHIFLGQFEDAAEHYKRTLALAVELG-------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 88899999999999999998876411000 00112577888999999999999999999987 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
...++..+...|...|++++|...+++++++.+.
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2457788889999999999999999999887654
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=9.9e-11 Score=117.56 Aligned_cols=403 Identities=12% Similarity=0.023 Sum_probs=265.3
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCC---chHHHHHHHHhHHC
Q 010881 9 SHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNE---PIKAFALYKQMLRS 82 (498)
Q Consensus 9 ~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~ 82 (498)
...+... +.|...|..++..+.+. ++++.|+.+|+.+. ..+...|...+..-.+.++ ++.+..+|++....
T Consensus 56 E~~l~~n-p~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 56 NDMIEEQ-PTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHC-cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 3444444 45899999999999998 99999999999876 3456678888888888888 99999999999874
Q ss_pred C-CCCCcchHHHHHHHHHccCCc--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------CCChhh
Q 010881 83 D-FLPNNYTFSFILRACADTSCL--------FVGLICHAQVIRL-GW-ESY-DFVLNGLLHLYAT---------CNCMDP 141 (498)
Q Consensus 83 ~-~~p~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~ 141 (498)
. ..|++..|...+....+.++. +...++|+.++.. |. .++ ...|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 3 237888888777766555544 3345777776653 55 443 4677777766543 345678
Q ss_pred HHHHhhccCCCC---h-hhHH---HHHHHH----------HccCCHHHHHHHHhh-------CCC--------------C
Q 010881 142 ARKLFDMSVNRD---V-ISWT---SLINGY----------AKSGQISIARQMFDK-------MPE--------------K 183 (498)
Q Consensus 142 a~~~~~~~~~~~---~-~~~~---~li~~~----------~~~~~~~~A~~~~~~-------~~~--------------~ 183 (498)
+..+|++...-. . ..|. .+...+ -...+++.|...+.+ +.. |
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 889998876421 1 2222 221111 001223344444433 111 0
Q ss_pred --C------hhHHHHHHHHHHhCC-------CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHH
Q 010881 184 --N------AVSWSAMINGYVQVD-------LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVD 247 (498)
Q Consensus 184 --~------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~ 247 (498)
+ ...|...+..--..+ ..+.+..+|++.+.. .+-+...|.....-+...|+.+.|. .+++...
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 0 123444444333222 123455678777765 2335566666777777778888886 8888887
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC------------hhHHHHHHHHHHhcCCh
Q 010881 248 RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-------------RD------------VFAYTSLISGLANHDQS 302 (498)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~ 302 (498)
.. ++.+...+...+....+.|+++.|..+|+++.. |+ ...|...+....+.|..
T Consensus 372 ~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 372 QC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred Hh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 65 366777778888888888999999988887753 21 23577777777778888
Q ss_pred HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 010881 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-GMLEAAKKVVREM--PIEPDNYVLGALLNACRVHG 379 (498)
Q Consensus 303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g 379 (498)
+.|..+|.+..+. .| .+....|...+..-.+. ++.+.|..+|+.. ...-+...|...+......|
T Consensus 451 ~~AR~vf~~A~~~--~~----------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 451 AASRKIFGKCRRL--KK----------LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHHHT--GG----------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cC----------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 9999999988774 01 11233444333333343 4588888888877 22235666677777777888
Q ss_pred CHHHHHHHHHHHHhcCCC---CchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 380 DVDLGKETVESLVERSLD---HEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 380 ~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+.+.|..+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999998887763 3455777777777888888888888888754
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=2.3e-12 Score=119.55 Aligned_cols=271 Identities=13% Similarity=-0.013 Sum_probs=154.8
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHH
Q 010881 96 RACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI 172 (498)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (498)
..+...|++++|...++++++..+... ...+..+...+...|++++|.+.+++..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------------- 70 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL---------------------- 70 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Confidence 344555555555555555555532211 2344455555556666666655554321
Q ss_pred HHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC----------
Q 010881 173 ARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPN----HAGIVGALTACAFLGA---------- 235 (498)
Q Consensus 173 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~---------- 235 (498)
.+......+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 71 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 71 --TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp --HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred --HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 111111000 122344444455555555555555554432110 011 1234444444555555
Q ss_pred ----------hHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHH
Q 010881 236 ----------LDQGRWIHAYVDRN----GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTS 291 (498)
Q Consensus 236 ----------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 291 (498)
+++|...+....+. +. +....++..+...|...|++++|...+++..+ ++ ..++..
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 55555555444321 11 11134566677777788888888887776653 11 236777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-
Q 010881 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEP- 363 (498)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p- 363 (498)
+...+...|++++|...+++........+ .......++..+...+...|++++|...+++. +..+
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLK-------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 88888889999999999888765310000 00012567888899999999999999999877 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
...++..+...|...|++++|...++++++..+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2457778888999999999999999999987654
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=2.8e-12 Score=108.07 Aligned_cols=165 Identities=15% Similarity=0.008 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA 297 (498)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 297 (498)
..|..+...+...|++++|...|+...+.. +-+..++..+..+|.+.|++++|...+..... .+...+..+...+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 344444444555555555555555554443 44556666666777777777777776666542 34556666677777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010881 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNAC 375 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 375 (498)
..++++.|...+.+.... .|+ +...+..+..+|.+.|++++|++.|++. ...| +..+|..+..+|
T Consensus 85 ~~~~~~~a~~~~~~a~~~--~~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIAL--NTV-----------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--Ccc-----------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 788888888888887764 333 5778888888899999999999998887 4445 678888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 376 RVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
...|++++|++.|+++++.+|+++
T Consensus 152 ~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHCCCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999999888653
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=1.6e-12 Score=131.97 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=140.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329 (498)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~ 329 (498)
-+..+++.|..+|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..|++.++. .|+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~--------- 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT--------- 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------
Confidence 3466788888888888888888888887764 35678888899999999999999999998874 455
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407 (498)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 407 (498)
+...|..+..+|...|++++|++.|++. .+.| +...|..+...|...|++++|++.|+++++++|++..++..++.
T Consensus 76 --~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 76 --FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 5889999999999999999999999988 5556 68889999999999999999999999999999999999999999
Q ss_pred HhHhcCCcchHHHHHHhhhh
Q 010881 408 IYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 408 ~~~~~g~~~~a~~~~~~m~~ 427 (498)
+|...|++++|.+.+++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 99999999999998888764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=3.9e-11 Score=113.98 Aligned_cols=202 Identities=7% Similarity=-0.184 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CC-----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-C----C
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RP-----NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-L----D 254 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~ 254 (498)
.++..+...|...|++++|...+++..+.-. .+ ...++..+...+...|++++|...+....+..-. + .
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 4566667777777777777777776654210 01 1235666667777777777777777766543100 1 1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 325 (498)
..++..+..+|...|++++|...|++..+ .+ ..++..+...|...|++++|...+++..+....
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------- 296 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK------- 296 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------
Confidence 24677788888889999888888877654 22 346788888999999999999999888763100
Q ss_pred hhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 326 IYGIEPGVQHYGCLVDLLGRAGM---LEAAKKVVREMPIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
.+-+.....+..+...+...|+ +++|..++++.+..| ....+..+...|...|++++|...++++++..
T Consensus 297 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 297 -AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp -HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 0111123335678888888888 888888888885444 34466677888888899999999888887744
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=125.02 Aligned_cols=231 Identities=8% Similarity=-0.047 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLC-------GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN------GI- 251 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 251 (498)
.++..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...++.+.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555555442 11222334445555555566666666655555443 11
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----------RDVFAYTSLISGLANHDQSASAIELFMRMQLE----- 315 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 315 (498)
+....++..+...|...|++++|...|+++.+ ....++..+...+...|++++|..+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 22344566667777777777777777665542 12346777888888899999999999888764
Q ss_pred -CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHh
Q 010881 316 -GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P---------IEPD-------NYVLGALLNACRV 377 (498)
Q Consensus 316 -~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~l~~~~~~ 377 (498)
+..|. ...++..+..+|...|++++|...++++ . ..+. ...+..+...+..
T Consensus 188 ~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 188 GPDDPN-----------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp CTTCHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred CCCCHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 11111 4678889999999999999999999877 1 1121 1122233334555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.+.+.+|...++.+....|....++..++.+|.+.|++++|.+++++..+
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777788888888888888888899999999999999999999988765
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=4e-12 Score=120.79 Aligned_cols=227 Identities=11% Similarity=-0.028 Sum_probs=175.3
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-C-----ChhHH
Q 010881 190 AMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-L-----DIILG 258 (498)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~ 258 (498)
.....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+....+..-. + ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3566788899999999999998763 1122 2356788888899999999999999988764211 1 23577
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCchhhh
Q 010881 259 TAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLE----GVVPNESMSE 325 (498)
Q Consensus 259 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~ 325 (498)
+.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +..|+
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 262 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS----- 262 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-----
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-----
Confidence 8889999999999999999988763 12 247888999999999999999999998773 11122
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC
Q 010881 326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI-----EP-DNYVLGALLNACRVHGD---VDLGKETVESLVERS 395 (498)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 395 (498)
...++..+..+|.+.|++++|...+++. .+ .| ....+..+...+...|+ +++|+.++++. ...
T Consensus 263 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~ 335 (383)
T 3ulq_A 263 ------LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY 335 (383)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCH
T ss_pred ------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCH
Confidence 4778999999999999999999999887 11 22 23335667778888898 77777777766 223
Q ss_pred CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
|.....+..++.+|...|++++|...+++..+.
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444557888999999999999999999998753
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=5.6e-11 Score=109.12 Aligned_cols=213 Identities=10% Similarity=-0.017 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881 202 KEALEHFNYMQLCGFRPNHAGIVGALTACA-------FLGAL-------DQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267 (498)
Q Consensus 202 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (498)
++|...|++..... +-+...|..+...+. ..|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666655531 223334444444433 23554 6666666666652113344566666666666
Q ss_pred cCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881 268 CGCIETACSVFDSMPN--R-DVF-AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343 (498)
Q Consensus 268 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 343 (498)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. |+ +...|...+...
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~-----------~~~~~~~~a~~~ 178 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT-----------RHHVYVTAALME 178 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TC-----------CTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-----------CHHHHHHHHHHH
Confidence 6666666666666543 2 232 56666666666666777777776666531 22 233443333332
Q ss_pred h-hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchHHHHHHHHhHhcCCcc
Q 010881 344 G-RAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVER---SLD-HEGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 344 ~-~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~ 416 (498)
. ..|++++|..+|++. ...| +...|..++..+...|++++|..+|+++++. .|+ ....+..++..+.+.|+.+
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2 256677777776665 2223 4566666666666667777777777777664 232 3445666666666667777
Q ss_pred hHHHHHHhhhhC
Q 010881 417 GVEKVRRGMEDN 428 (498)
Q Consensus 417 ~a~~~~~~m~~~ 428 (498)
+|..+++++.+.
T Consensus 259 ~a~~~~~~a~~~ 270 (308)
T 2ond_A 259 SILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666666543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.6e-10 Score=106.01 Aligned_cols=213 Identities=8% Similarity=-0.038 Sum_probs=154.0
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHH-------hCCCH-------hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 010881 171 SIARQMFDKMPE---KNAVSWSAMINGYV-------QVDLF-------KEALEHFNYMQLCGFRPN-HAGIVGALTACAF 232 (498)
Q Consensus 171 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 232 (498)
++|..+|++... .+...|..++..+. +.|++ ++|..+|++..+. +.|+ ...+..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 344455554432 24555555555544 34664 7888888887763 2343 4467777777777
Q ss_pred cCChHHHHHHHHHHHHhCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHH-hcCChHHHH
Q 010881 233 LGALDQGRWIHAYVDRNGIELD-II-LGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLA-NHDQSASAI 306 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~-~~~~~~~a~ 306 (498)
.|++++|..+|+.+.+. .|+ .. +|..++..+.+.|++++|..+|++..+. +...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888887764 343 33 7888888888888888888888877652 3334433332222 369999999
Q ss_pred HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCC
Q 010881 307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P---IEP--DNYVLGALLNACRVHGD 380 (498)
Q Consensus 307 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~ 380 (498)
.+|++..+. .|+ +...|..++..+.+.|++++|..+|++. . +.| ....|..++..+...|+
T Consensus 190 ~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 190 KIFELGLKK--YGD-----------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHHHHHH--HTT-----------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHh--CCC-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999998874 344 5788999999999999999999999988 2 355 46688888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 010881 381 VDLGKETVESLVERSLDHE 399 (498)
Q Consensus 381 ~~~A~~~~~~~~~~~~~~~ 399 (498)
.+.|..+++++++..|++.
T Consensus 257 ~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 257 LASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHccccc
Confidence 9999999999999999865
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=4e-11 Score=100.72 Aligned_cols=162 Identities=14% Similarity=0.022 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 331 (498)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+. .|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------- 74 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD----------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-----------
Confidence 34567788889999999999999999875 36678888999999999999999999999875 233
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI-EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+...|++++|...++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 5788999999999999999999999988 32 347888888999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
...|++++|.+.+++..+..
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999887643
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=113.24 Aligned_cols=237 Identities=12% Similarity=0.011 Sum_probs=141.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc------CCCC
Q 010881 156 SWTSLINGYAKSGQISIARQMFDKMPE--------K---NAVSWSAMINGYVQVDLFKEALEHFNYMQLC------GFRP 218 (498)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p 218 (498)
++..+...+...|++++|...|+++.+ . ...++..+...|...|++++|...+++.... +-.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444444445555555554444432 1 2345666777777777777777777776653 2122
Q ss_pred -CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------
Q 010881 219 -NHAGIVGALTACAFLGALDQGRWIHAYVDRN------GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN------- 283 (498)
Q Consensus 219 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 283 (498)
....+..+...+...|++++|...++.+.+. +. +....++..+...|...|++++|...|+++.+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 3445666777777778888888777776654 21 22345667778888888888888888776542
Q ss_pred C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 010881 284 R----DVFAYTSLISGLANHDQSASAIELFMRMQLEG-------VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA 352 (498)
Q Consensus 284 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 352 (498)
+ ...++..+...|...|++++|...++++.+.. ..+... ........+..+...+...+.+.+|
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK-----PIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C-----CHHHHHHHHHHC-------CCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH-----HHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1 23467778888889999999999998887631 111100 0000122233333444455566666
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 353 KKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 353 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
...+... ...| +..++..+...|...|++++|.+.+++++++.|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6666666 3334 5678888999999999999999999999988764
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=1.4e-10 Score=101.43 Aligned_cols=175 Identities=11% Similarity=-0.022 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA 297 (498)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 297 (498)
..+......+...|++++|...|+...+..-+++...+..+..+|...|++++|...|++..+ .+...|..+...|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 344444444455555555555555555443224555555566666666777777666665543 24456777777888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HH
Q 010881 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-------QHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---NY 366 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~ 366 (498)
..|++++|...+++..+. .|+ +. ..|..+...+...|++++|...|++. ...|+ ..
T Consensus 88 ~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 154 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKA--VPG-----------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD 154 (228)
T ss_dssp HTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCC-----------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence 888888888888888774 333 23 56888889999999999999999998 66776 56
Q ss_pred HHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 367 VLGALLNACRVHGDV---------------------------DLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~---------------------------~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
.|..+...|...|+. ++|+..+++++++.|+++.+...+..+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 155 ALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777777777776665 667777777777777766555555443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.8e-09 Score=101.97 Aligned_cols=200 Identities=11% Similarity=-0.052 Sum_probs=120.3
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC----Chh
Q 010881 188 WSAMINGYVQVDLFKEALEHFNYMQLC----GFR--PN-HAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL----DII 256 (498)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 256 (498)
+..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...++......-.. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555566666666666666655432 111 21 2234445555666666666666666655432111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-hhHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPN----RD-VFAYT-----SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 326 (498)
++..+...+...|++++|...+++... ++ ...+. ..+..+...|++++|...+++..... |..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~----- 248 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE--FAN----- 248 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC--CTT-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC--CCc-----
Confidence 455666677777777777777765431 11 11122 22234667888888888888775432 110
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDN-YVLGALLNACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
.......+..+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++++..+
T Consensus 249 --~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 249 --NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp --CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 0112335677888899999999999998876 211222 2566677788899999999999999887553
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.6e-10 Score=109.45 Aligned_cols=228 Identities=10% Similarity=-0.058 Sum_probs=139.4
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--C----CChhHHH
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCGF-RPN----HAGIVGALTACAFLGALDQGRWIHAYVDRNGI--E----LDIILGT 259 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~ 259 (498)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+....+..- . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566677777776666654210 111 23455556666666777777666666554210 0 1134556
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881 260 AIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330 (498)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 330 (498)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+.. ...+.+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--------~~~~~~ 258 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS--------REKVPD 258 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------HHHCGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HhhCCh
Confidence 677777777777777777766543 11 2466777777888888888888888776620 000111
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCch
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM----PI--EP-DNYVLGALLNACRVHGD---VDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 400 (498)
....++..+..++.+.|++++|...+++. .- .| ....+..+...+...++ +.+|+..+++. ...|....
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~ 337 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEA 337 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHH
Confidence 13667777888888888888888888776 11 22 23344555556666677 66666666652 12233344
Q ss_pred HHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 401 VHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.+..++..|...|++++|...+++..+
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566788888888888888888877754
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=5.5e-09 Score=98.59 Aligned_cols=302 Identities=11% Similarity=-0.020 Sum_probs=192.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-c----hhHHHH
Q 010881 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY----TFSFILRACADTSCLFVGLICHAQVIRLGWES-Y----DFVLNG 128 (498)
Q Consensus 58 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 128 (498)
.....+...|++++|...+++........+.. ++..+...+...|+++.|...+++..+..... + ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667899999999999887743111111 34555566778899999988888877642211 1 122455
Q ss_pred HHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHH
Q 010881 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEA 204 (498)
Q Consensus 129 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a 204 (498)
+...+...|++++|.+.+++ +.++......+ ....+..+...+...|++++|
T Consensus 99 la~~~~~~G~~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEK------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 66667777777777766643 33333333222 234556677788888999999
Q ss_pred HHHHHHHHHcCCC--C--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh-hHHH-----HHHHHHHhcCCHHHH
Q 010881 205 LEHFNYMQLCGFR--P--NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI-ILGT-----AIIDMYAKCGCIETA 274 (498)
Q Consensus 205 ~~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A 274 (498)
...+++....... + ...++..+...+...|++++|...++......-.++. ..+. ..+..+...|++++|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 8888887754221 1 2345667777788889999999998887664212221 1121 233457789999999
Q ss_pred HHHHhhCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC-hHHHHHHHHHHhhc
Q 010881 275 CSVFDSMPNRD-------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG-VQHYGCLVDLLGRA 346 (498)
Q Consensus 275 ~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 346 (498)
...++....++ ...+..+...+...|++++|...+++....... .+..++ ..++..+..++...
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~--------~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS--------LRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CcchhhHHHHHHHHHHHHHHh
Confidence 99999887632 124567788899999999999999988653100 011112 24677788899999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 347 GMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 347 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
|+.++|...+++. ...+.. ..+..+...| +....+++.+....|.
T Consensus 307 g~~~~A~~~l~~al~~~~~~----g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLANRT----GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHH----CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhccc----cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 9999999999876 110100 0112233333 5566666776666664
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=1.1e-08 Score=102.94 Aligned_cols=381 Identities=7% Similarity=-0.032 Sum_probs=256.9
Q ss_pred chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCC---hhHHHHHhhhcC--C---CCcchHHHHHHHHHhCCCc----
Q 010881 2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD---LSHGYRLFVCLQ--Y---RTTFIWNTMIRGFAEKNEP---- 69 (498)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~--~---~~~~~~~~li~~~~~~~~~---- 69 (498)
+.++.+++.++.. ++.....|...+..-.+. |+ ++.+..+|++.. . |++..|...+....+.++.
T Consensus 83 ~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~ 159 (679)
T 4e6h_A 83 KQVYETFDKLHDR-FPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGG 159 (679)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccccc
Confidence 4678899998877 566788999999998888 88 999999999865 3 7888888888776665554
Q ss_pred ----hHHHHHHHHhHH-CCC-CCCc-chHHHHHHHHHc---------cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 010881 70 ----IKAFALYKQMLR-SDF-LPNN-YTFSFILRACAD---------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY 133 (498)
Q Consensus 70 ----~~A~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (498)
+...++|+.... .|. .|+. ..|...+..... .++++.+..+|+.++.........+|......-
T Consensus 160 ~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe 239 (679)
T 4e6h_A 160 EEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWE 239 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 334478888765 366 5643 466666655432 335677888998888532222223332222111
Q ss_pred Hh-------------CCChhhHHHHhhc-------cCC--------------C--C------hhhHHHHHHHHHccC---
Q 010881 134 AT-------------CNCMDPARKLFDM-------SVN--------------R--D------VISWTSLINGYAKSG--- 168 (498)
Q Consensus 134 ~~-------------~g~~~~a~~~~~~-------~~~--------------~--~------~~~~~~li~~~~~~~--- 168 (498)
.. ..+++.|...+.+ +.. | + ...|...+.---..+
T Consensus 240 ~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l 319 (679)
T 4e6h_A 240 QDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319 (679)
T ss_dssp HHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred HhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence 11 1123334444432 111 0 0 123444444322222
Q ss_pred ----CHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 010881 169 ----QISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEAL-EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240 (498)
Q Consensus 169 ----~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 240 (498)
..+....+|++... .+...|-..+..+...|+.++|. .+|++.... .+.+...+...+......|+++.|.
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 12334455665542 26677888888888889999997 999999874 3344445566777778889999999
Q ss_pred HHHHHHHHhC---------CCC------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHH
Q 010881 241 WIHAYVDRNG---------IEL------------DIILGTAIIDMYAKCGCIETACSVFDSMPNR----DVFAYTSLISG 295 (498)
Q Consensus 241 ~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~ 295 (498)
.+|+.+.+.. ..| ...+|...++...+.|.++.|..+|..+.+. ....|...+..
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999987641 013 2346888888888899999999999988643 22333333222
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHH
Q 010881 296 LANH-DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP----DNYVLG 369 (498)
Q Consensus 296 ~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~ 369 (498)
-.+. ++.+.|..+|+..++. .|+ +...|...++.....|+.+.|..+|++. ...| ....|.
T Consensus 479 E~~~~~d~e~Ar~ife~~Lk~--~p~-----------~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 479 EYHISKDTKTACKVLELGLKY--FAT-----------DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp HHTTTSCCHHHHHHHHHHHHH--HTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHH--CCC-----------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2333 4589999999999885 333 5677788899888999999999999997 3333 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 370 ALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
.++..-...|+.+.+..+.+++.+..|+++
T Consensus 546 ~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 546 KVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 888888999999999999999999999876
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=2.1e-11 Score=119.02 Aligned_cols=179 Identities=9% Similarity=-0.075 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI-ETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMR 311 (498)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (498)
++.+...+....... +.+...+..+..+|...|++ ++|...|++..+ .+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666555443 45778899999999999999 999999998764 3578999999999999999999999999
Q ss_pred HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--
Q 010881 312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---------GMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH-- 378 (498)
Q Consensus 312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-- 378 (498)
..+. .|+...+..+..+|... |++++|...|++. ...| +...|..+..+|...
T Consensus 163 al~~--------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 163 ALTH--------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHTT--------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhh--------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9874 34578999999999999 9999999999998 4455 688999999999998
Q ss_pred ------CCHHHHHHHHHHHHhcCC---CCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 379 ------GDVDLGKETVESLVERSL---DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 379 ------g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
|++++|+..|+++++.+| .++.++..++.+|...|++++|.+.|++..+..
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999 899999999999999999999999999987654
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=6.5e-10 Score=105.28 Aligned_cols=226 Identities=7% Similarity=-0.091 Sum_probs=163.5
Q ss_pred HHHHHccCCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC-----CCC-CHHHHHH
Q 010881 161 INGYAKSGQISIARQMFDKMPE-----K----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-----FRP-NHAGIVG 225 (498)
Q Consensus 161 i~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p-~~~~~~~ 225 (498)
...+...|++++|...|++... + ...++..+...|...|++++|...+++..+.. ..+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345566777777777665532 1 23467778888888888888888888876421 111 2346667
Q ss_pred HHHHHhccCChHHHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C---ChhHHHHH
Q 010881 226 ALTACAFLGALDQGRWIHAYVDRN----GIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPN-----R---DVFAYTSL 292 (498)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~~~~~~l 292 (498)
+...+...|++++|...+....+. +.++ ...++..+..+|...|++++|...|++..+ . ...++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 777888888999988888777653 1111 234677788899999999999999887764 2 24567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCC-CHHHH
Q 010881 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM---LEAAKKVVREMPIEP-DNYVL 368 (498)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~ 368 (498)
...+...|++++|...+++..+.....+ -+.....+..+...+...++ +.+|...+++.+..| ....+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 339 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARS--------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA 339 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTC--------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH
Confidence 8899999999999999999887532211 12234456777778888888 999999999875444 34466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 369 GALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
..+...|...|++++|...|+++++.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888999999999999999998763
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.1e-10 Score=102.05 Aligned_cols=163 Identities=8% Similarity=-0.090 Sum_probs=141.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328 (498)
Q Consensus 253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 328 (498)
.|+..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+. .|+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~-------- 74 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN-------- 74 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS--------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc--------
Confidence 4567888889999999999999999997753 56777777999999999999999999999874 444
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--
Q 010881 329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN-------YVLGALLNACRVHGDVDLGKETVESLVERSLD-- 397 (498)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 397 (498)
+...+..+..+|...|++++|...+++. ...| +. ..|..+...+...|++++|++.|+++++.+|+
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 75 ---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW 151 (228)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred ---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 5788999999999999999999999998 4445 44 45778888899999999999999999999999
Q ss_pred CchHHHHHHHHhHhcCCc---------------------------chHHHHHHhhhhC
Q 010881 398 HEGVHVLLSNIYASTEQW---------------------------NGVEKVRRGMEDN 428 (498)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~---------------------------~~a~~~~~~m~~~ 428 (498)
++.++..++.+|...|+. ++|...+++..+.
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888999999999998888 7888888777654
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.9e-10 Score=96.46 Aligned_cols=134 Identities=14% Similarity=0.100 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881 254 DIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330 (498)
Q Consensus 254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~ 330 (498)
+..++..+...|...|++++|...++++.+ .+...+..+...+...|++++|...++++... .|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---------- 108 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPI---------- 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT----------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcH----------
Confidence 344445555555555555555555554432 24456666677777778888888888877764 222
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
+...+..+..++...|++++|...++++ ...| +...+..+...+...|++++|...++++++..|+++.
T Consensus 109 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 109 -NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred -hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 4677888888888889999998888887 2233 6778888889999999999999999999988887654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=1e-10 Score=118.81 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=112.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHh
Q 010881 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLAN 298 (498)
Q Consensus 222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 298 (498)
.++.+...+...|++++|...|++..+.. +-+..++..+..+|.+.|++++|...|++..+ .+..+|..+..+|..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555443 34456666677777777777777777766543 345677777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010881 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACR 376 (498)
Q Consensus 299 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 376 (498)
.|++++|++.|++..+. .|+ +...|..+..+|...|++++|+..|++. .+.| +...|..+...+.
T Consensus 90 ~g~~~~A~~~~~kAl~l--~P~-----------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQI--NPA-----------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp TTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 88888888888887763 444 5778888888888888888888888887 5556 5777888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 010881 377 VHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 377 ~~g~~~~A~~~~~~~~~~~~ 396 (498)
..|++++|.+.+++++++.|
T Consensus 157 ~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCh
Confidence 88888888888888876443
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=5.5e-11 Score=96.28 Aligned_cols=141 Identities=9% Similarity=-0.053 Sum_probs=116.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHH
Q 010881 261 IIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYG 337 (498)
Q Consensus 261 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 337 (498)
|...+...|++++|+..++..... +...+..+...|.+.|++++|+..|++.++. .|+ +..+|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~-----------~~~a~~ 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QER-----------DPKAHR 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHH
Confidence 445566778899999999887763 4456778889999999999999999999884 455 688999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881 338 CLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKET-VESLVERSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 338 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (498)
.+..+|...|++++|...|++. .+.| +...|..+...|...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999988 5566 688899999999999998876654 699999999999999988888888775
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=9.3e-11 Score=105.77 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSMPN-----------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV---VPN 320 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~ 320 (498)
..++..+..+|...|++++|...|+++.+ ....++..+...|...|++++|...+++...... .|+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34555566666666666666666655431 1234677777778888888888888877765310 010
Q ss_pred chhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI--------EP-DNYVLGALLNACRVHGDVDLGKETVES 390 (498)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (498)
-+....++..+...|...|++++|...+++. .. .| ...++..+...|...|++++|...+++
T Consensus 123 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 123 --------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0124778899999999999999999999887 22 33 356788889999999999999999999
Q ss_pred HHhcC-------------------------------------------------CCCchHHHHHHHHhHhcCCcchHHHH
Q 010881 391 LVERS-------------------------------------------------LDHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 391 ~~~~~-------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
+++.. |....++..++.+|...|++++|..+
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 195 ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98751 23344677899999999999999999
Q ss_pred HHhhhh
Q 010881 422 RRGMED 427 (498)
Q Consensus 422 ~~~m~~ 427 (498)
+++..+
T Consensus 275 ~~~al~ 280 (283)
T 3edt_B 275 EDCASR 280 (283)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998765
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=6e-10 Score=101.32 Aligned_cols=163 Identities=11% Similarity=-0.050 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCchhhh
Q 010881 256 ILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANH-DQSASAIELFMRMQLEGVVPNESMSE 325 (498)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~ 325 (498)
.+++.+..+|...|++++|...|++..+ .+ ..+++.+...|... |++++|+..|++..+.. |+.
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~---- 151 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQD---- 151 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHT----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhC----
Confidence 3455555555556666555555554432 11 34677888889886 99999999999987631 110
Q ss_pred hhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 326 IYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---N-----YVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 326 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
+-.+ ...++..+...+.+.|++++|...|++. ...|+ . ..|..+..++...|++++|...+++++++.
T Consensus 152 --~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 152 --QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred --CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0000 1457889999999999999999999987 32332 1 156778888999999999999999999999
Q ss_pred CCCchH-----HHHHHHHhH--hcCCcchHHHHHHhhh
Q 010881 396 LDHEGV-----HVLLSNIYA--STEQWNGVEKVRRGME 426 (498)
Q Consensus 396 ~~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~ 426 (498)
|..... +..++.++. ..+++++|+..|+++.
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 875543 334555554 4567888888886554
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=1.4e-09 Score=98.00 Aligned_cols=232 Identities=11% Similarity=-0.014 Sum_probs=145.2
Q ss_pred HhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHHHHHHH
Q 010881 134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFN 209 (498)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (498)
...|++++|...|+ +|++++.+...+ ...++..+...|...|++++|...|+
T Consensus 12 ~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (283)
T 3edt_B 12 SGLVPRGSAVPLCK------------------------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67 (283)
T ss_dssp -CCSCSSSHHHHHH------------------------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 34577777777764 344555444322 34566777777888888888888887
Q ss_pred HHHHc------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------C-CCCChhHHHHHHHHHHhcCCHHHHH
Q 010881 210 YMQLC------GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRN------G-IELDIILGTAIIDMYAKCGCIETAC 275 (498)
Q Consensus 210 ~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~ 275 (498)
+..+. +-.| ...++..+...+...|++++|...+..+.+. . .+....++..+...|...|++++|.
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 68 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77653 2222 3446677777778888888888888776654 1 1233566777888888888888888
Q ss_pred HHHhhCCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHH
Q 010881 276 SVFDSMPNR-----------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLL 343 (498)
Q Consensus 276 ~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~ 343 (498)
..|+++.+. ...++..+...|...|++++|...+++..+.. |.. ......+ ....+..+...+
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 222 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA--HEK---EFGSVNGDNKPIWMHAEERE 222 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH---HSSSCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh---cCCCcchhHHHHHHHHHHHH
Confidence 888766431 24577888889999999999999999887631 000 0000111 233444444444
Q ss_pred hhc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 344 GRA------GMLEAAKKVVREMP-IEP-DNYVLGALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 344 ~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
... ..+.++...++..+ ..| ...++..+...|...|++++|...++++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 223 ESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332 23445555555552 233 4567888999999999999999999998864
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=2.6e-10 Score=116.42 Aligned_cols=169 Identities=12% Similarity=-0.030 Sum_probs=97.5
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 010881 231 AFLGALDQGRWIHAYVD--------RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANH 299 (498)
Q Consensus 231 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 299 (498)
...|++++|...++.+. +.. +.+...+..+..+|...|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45556666666666555 222 33445555666666666666666666665543 2445566666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010881 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRV 377 (498)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 377 (498)
|++++|...|++..+. .|+ +...|..+..++.+.|++++ ...|++. ...| +...|..+..++..
T Consensus 481 g~~~~A~~~~~~al~l--~P~-----------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPG-----------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STT-----------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 6666666666666553 233 35556666666666666666 6666655 3334 45556666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (498)
.|++++|++.|+++++.+|++..++..++.++...++
T Consensus 547 ~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666666666666655433
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=1.9e-09 Score=84.97 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CC
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PD 364 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~ 364 (498)
..|..+...+...|++++|..+++++.+.. |+ +...+..+...+...|++++|...++++ ... .+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR-----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--Cc-----------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 356778888999999999999999998752 32 5778889999999999999999999998 323 46
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
...+..+...+...|++++|...++++++..|.+...+..++.++...|++++|...++++.+..
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 77888899999999999999999999999999998899999999999999999999999887643
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=4.5e-09 Score=93.80 Aligned_cols=191 Identities=12% Similarity=-0.034 Sum_probs=148.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-D---VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE 325 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 325 (498)
+.+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|...|++++|...|++..+. .|+.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~---- 85 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQID---- 85 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCC----
Confidence 34556677778888899999999999998875 3 3 567888889999999999999999999885 2321
Q ss_pred hhCCCCChHHHHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhc
Q 010881 326 IYGIEPGVQHYGCLVDLLGR--------AGMLEAAKKVVREM-PIEPD-NYVL-----------------GALLNACRVH 378 (498)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~ 378 (498)
+.....+..+..++.. .|++++|...|+++ ...|+ .... ..+...|...
T Consensus 86 ----~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 86 ----PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR 161 (261)
T ss_dssp ----TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1135678888889988 99999999999988 33342 2222 4567789999
Q ss_pred CCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHhHhc----------CCcchHHHHHHhhhhCCccccCceeEEEECCEE
Q 010881 379 GDVDLGKETVESLVERSLDHE---GVHVLLSNIYAST----------EQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV 445 (498)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 445 (498)
|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 162 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 225 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---------------- 225 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------------
T ss_pred cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------------
Confidence 999999999999999999854 4688899999876 89999999999987643
Q ss_pred EEEeeCCCCCcchHHHHHHHHHHHHHHHhc
Q 010881 446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 475 (498)
+.++...+....+..+...+.+.
T Consensus 226 -------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 -------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHHHHHHHh
Confidence 23556667777777777766664
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=2.6e-09 Score=97.12 Aligned_cols=218 Identities=9% Similarity=-0.059 Sum_probs=152.4
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 010881 169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRPN-HAGIVGALTACAFLGALDQGRWIH 243 (498)
Q Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 243 (498)
++++|...|++. ...|...|++++|...|.+..+. |-.++ ..+|..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666665543 45677788888888888877543 22222 457777888888888888888888
Q ss_pred HHHHHhCC---CC--ChhHHHHHHHHHHhc-CCHHHHHHHHhhCCC--C---C----hhHHHHHHHHHHhcCChHHHHHH
Q 010881 244 AYVDRNGI---EL--DIILGTAIIDMYAKC-GCIETACSVFDSMPN--R---D----VFAYTSLISGLANHDQSASAIEL 308 (498)
Q Consensus 244 ~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~ 308 (498)
+...+... .+ ...+++.+..+|... |++++|...|++..+ | + ..++..+...+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77765321 11 135778888899996 999999999988764 1 1 34688899999999999999999
Q ss_pred HHHHHHcCCCCCchhhhhhCCC-C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--h
Q 010881 309 FMRMQLEGVVPNESMSEIYGIE-P-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNY------VLGALLNACR--V 377 (498)
Q Consensus 309 ~~~m~~~~~~p~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~ 377 (498)
|++..+.. |+. +.. . ....|..+..++...|++++|...|++. .+.|+.. .+..++.++. .
T Consensus 181 ~~~al~~~--~~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 181 YSKLIKSS--MGN------RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHTT--SSC------TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHH--hcC------CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 99998853 331 000 0 1236788889999999999999999998 5556422 3444556664 4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 378 HGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
.+++++|+..|+++..++|........+
T Consensus 253 ~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp TTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 5679999999988888877654444433
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=6.9e-09 Score=92.73 Aligned_cols=237 Identities=8% Similarity=-0.067 Sum_probs=158.5
Q ss_pred cCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881 167 SGQISIARQMFDKMPEKN-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245 (498)
Q Consensus 167 ~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 245 (498)
.|++..++.-..++...+ ...-.-+.++|...|++... ..-.|....+..+...+ ..+ +...+++
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~ 91 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELEN 91 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHH
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHH
Confidence 366666666555443222 22223345677777776532 11234433433333333 222 5566666
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881 246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320 (498)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 320 (498)
....+ +++..+...+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .||
T Consensus 92 l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d 168 (310)
T 3mv2_B 92 LLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED 168 (310)
T ss_dssp TTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 65554 455566668888899999999999999887442 4557777888999999999999999999774 220
Q ss_pred chhhhhhCCCCChHHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 010881 321 ESMSEIYGIEPGVQHYGCLVDL--LGRAG--MLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVER- 394 (498)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 394 (498)
. +..+..+...|+.+ ....| +..+|..+|+++ ...|+..+-..++.++...|++++|.+.++.+.+.
T Consensus 169 ~-------~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 169 T-------VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c-------cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 0 00024555666655 33334 999999999999 54566444445555899999999999999988776
Q ss_pred ---------CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 395 ---------SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 395 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
+|+++.+...++......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58888888787777777786 8999999998754
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=1.1e-08 Score=91.40 Aligned_cols=181 Identities=17% Similarity=0.092 Sum_probs=127.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881 204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI-ELDIILGTAIIDMYAKCGCIETACSVFDSMP 282 (498)
Q Consensus 204 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 282 (498)
|+..|++....+ .++..++..+..++...|++++|.+++......+- .-+...+...+..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666544 45555556666777777888888877777655442 1356677778888888888888888888776
Q ss_pred C--C-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH
Q 010881 283 N--R-----DVFAYTSLISG--LANHD--QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA 351 (498)
Q Consensus 283 ~--~-----~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 351 (498)
+ | +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------------~p~~~~~~lLln~~~~~g~~~e 229 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------------FPTWKTQLGLLNLHLQQRNIAE 229 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------------SCSHHHHHHHHHHHHHHTCHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------------CCCcccHHHHHHHHHHcCCHHH
Confidence 4 3 13455555555 33334 899999999998764 2332333444558999999999
Q ss_pred HHHHHHhC-CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881 352 AKKVVREM-PI----------EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 352 A~~~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
|...++.+ .. .| ++.++..+|......|+ +|.++++++.+..|+++.+
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 99999875 22 25 67777677776667787 8999999999999999843
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=8.9e-10 Score=98.41 Aligned_cols=202 Identities=14% Similarity=-0.001 Sum_probs=119.2
Q ss_pred ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 010881 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN----HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT 259 (498)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (498)
+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..++...|++++|...|+.+.+.. +.+..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~~~--- 87 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QIDPR--- 87 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTT---
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCCch---
Confidence 45556666666777777777777777776542 22 3344455555555566666666655555542 10100
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCchhhhhh----
Q 010881 260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN--------HDQSASAIELFMRMQLEGVVPNESMSEIY---- 327 (498)
Q Consensus 260 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~~---- 327 (498)
....+..+..++.. .|++++|...|+++.+. .|+.......
T Consensus 88 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~ 140 (261)
T 3qky_A 88 -------------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKI 140 (261)
T ss_dssp -------------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHH
Confidence 01223334444444 66666666666666653 2321000000
Q ss_pred -CC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHH
Q 010881 328 -GI-EPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVH----------GDVDLGKETVES 390 (498)
Q Consensus 328 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~ 390 (498)
.. .-....+..+..+|.+.|++++|...|+++ ...|+ ...+..+..+|... |++++|+..+++
T Consensus 141 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 141 RELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 00 000112366788999999999999999988 33343 45677778888766 899999999999
Q ss_pred HHhcCCCCchH---HHHHHHHhHhcCCcchH
Q 010881 391 LVERSLDHEGV---HVLLSNIYASTEQWNGV 418 (498)
Q Consensus 391 ~~~~~~~~~~~---~~~l~~~~~~~g~~~~a 418 (498)
+++..|+++.+ ...+..++...++++++
T Consensus 221 ~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 221 LLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999998643 34455555555555443
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=2e-09 Score=86.68 Aligned_cols=102 Identities=6% Similarity=-0.082 Sum_probs=93.1
Q ss_pred CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 010881 328 GIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL 404 (498)
Q Consensus 328 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 404 (498)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4444 5778889999999999999999999998 5556 78899999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 405 LSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 405 l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
++.+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=3.1e-09 Score=88.53 Aligned_cols=157 Identities=15% Similarity=0.057 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 333 (498)
....+...+...|++++|...|+++.+ .+...+..+...+...|++++|...+++..... |+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------p~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--------------QDN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--------------CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--------------CCh
Confidence 345566777888899999999888875 356778888888888999999998888876531 223
Q ss_pred HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHH
Q 010881 334 QHYGCLVDL-LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH--EGVHVLLSNI 408 (498)
Q Consensus 334 ~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~ 408 (498)
..+..+... +...+...+|...+++. ...| +...+..+...+...|++++|...|+++++.+|+. +..+..++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 333222212 12222333467777776 4456 68888899999999999999999999999999875 4588899999
Q ss_pred hHhcCCcchHHHHHHhhhh
Q 010881 409 YASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 409 ~~~~g~~~~a~~~~~~m~~ 427 (498)
+...|+.++|...|++...
T Consensus 154 ~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 154 LSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHH
Confidence 9999999999999887653
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=9.2e-09 Score=88.51 Aligned_cols=172 Identities=10% Similarity=-0.103 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 010881 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLANHD----QSASAIELFMRMQ 313 (498)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~ 313 (498)
|...|+...+.| +...+..+...|...+++++|...|++..+ .++..+..|...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555544 556666677777777777777777776654 355666667776666 5 7888888888887
Q ss_pred HcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCH
Q 010881 314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREM-PIEPD---NYVLGALLNACRV----HGDV 381 (498)
Q Consensus 314 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~ 381 (498)
+.| +...+..|...|.. .+++++|...|++. ...|+ +..+..|...|.. .+++
T Consensus 81 ~~g---------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 81 EAG---------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HTT---------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HCC---------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 754 56788888888877 88999999999987 44453 7788888888888 7889
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHhHhc-C-----CcchHHHHHHhhhhCCc
Q 010881 382 DLGKETVESLVERSLDHEGVHVLLSNIYAST-E-----QWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 382 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 430 (498)
++|+.+|+++.+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 146 ~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 146 VKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999888 55666888888888764 3 78999999998887764
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=6.1e-09 Score=89.38 Aligned_cols=179 Identities=8% Similarity=0.010 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA 266 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (498)
.+......+...|++++|+..|++..+. .|+........ .... ...........+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~----~~~~--------------~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT----NVDK--------------NSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH----HSCT--------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh----hhcc--------------hhhhhHHHHHHHHHHHH
Confidence 3444556677888888888888887764 34332211110 0000 00111223345788888
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881 267 KCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL 343 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 343 (498)
+.|++++|...|++..+ .+...+..+...+...|++++|...|++..+. .|+ +..++..+..+|
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~a~~~lg~~~ 132 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EAD-----------NLAANIFLGNYY 132 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHHHH
Confidence 99999999999988764 36778888999999999999999999999884 454 578888888888
Q ss_pred hhcCC--HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 344 GRAGM--LEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 344 ~~~g~--~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
...|+ .+.+...++.. ...|....+.....++...|++++|+..|++++++.|++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66654 44556666665 322333344445666777889999999999999999974
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=4.1e-09 Score=95.42 Aligned_cols=159 Identities=11% Similarity=-0.030 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881 255 IILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331 (498)
Q Consensus 255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 331 (498)
...+..+...+...|++++|...|+++.. .+...+..+...+...|++++|...++++... .|+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~----------- 183 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD----------- 183 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS-----------
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc-----------
Confidence 33444444455555555555555554432 23344555555555555555555555554332 111
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHH
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH--EGVHVLLSN 407 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~ 407 (498)
...........+...++.++|...+++. ...| +...+..+...+...|++++|++.|+++++.+|++ ...+..++.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 1111222222344555555666666655 2234 56777777888888888888888888888888876 667888888
Q ss_pred HhHhcCCcchHHHHHHhhh
Q 010881 408 IYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 408 ~~~~~g~~~~a~~~~~~m~ 426 (498)
++...|+.++|...+++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 8888888888887776654
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.1e-08 Score=80.41 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV 333 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 333 (498)
.+..+...|...|++++|..+|+++.+ .+...+..+...+...|++++|...++++...+ |+ +.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------~~ 69 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR-----------SA 69 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------CH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CC-----------ch
Confidence 345566666677777777777766542 355667777777888888888888888877642 22 46
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
..+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++++..|+
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 77888888888999999999888887 3233 6778888888899999999999999999888775
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=1.2e-08 Score=88.85 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=71.4
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---h
Q 010881 343 LGRAGMLEAAKKVVREM-PIEPDN-YVL-----------------GALLNACRVHGDVDLGKETVESLVERSLDHE---G 400 (498)
Q Consensus 343 ~~~~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 400 (498)
+...|++++|...|+++ ...|+. ..+ ..+...|...|++++|+..|+++++..|+++ .
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 34578999999999998 545542 222 2345678899999999999999999999876 5
Q ss_pred HHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 431 (498)
++..++.++.+.|++++|.+.++.+...+..
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 6889999999999999999999998876543
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=5.3e-09 Score=104.74 Aligned_cols=160 Identities=18% Similarity=0.059 Sum_probs=125.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 010881 233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELF 309 (498)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 309 (498)
.|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+ .+...+..+...|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 55678899999999999999999999998765 35678999999999999999999999
Q ss_pred HHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHH
Q 010881 310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH---GDVDLG 384 (498)
Q Consensus 310 ~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A 384 (498)
++..+. .|+ +...+..+..+|...|++++|.+.+++. ...| +...+..+...+... |++++|
T Consensus 81 ~~al~~--~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 81 QQASDA--APE-----------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHhc--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 999885 344 5789999999999999999999999998 4445 678888999999999 999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHH
Q 010881 385 KETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
.+.++++++.+|.+...+..++
T Consensus 148 ~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 148 SAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999888887765
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.4e-08 Score=103.65 Aligned_cols=189 Identities=8% Similarity=-0.045 Sum_probs=150.4
Q ss_pred HhCCCHhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881 196 VQVDLFKEALEHFNYMQ--------LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK 267 (498)
Q Consensus 196 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (498)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 32 23355678888889999999999999999998875 6678899999999999
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHh
Q 010881 268 CGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG 344 (498)
Q Consensus 268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (498)
.|++++|...|+++.+ .+...|..+..++.+.|++++ +..|++..+. .|+ +...|..+..++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~-----------~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDG-----------VISAAFGLARARS 545 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTT-----------CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCc-----------hHHHHHHHHHHHH
Confidence 9999999999998764 367789999999999999999 9999999884 344 5789999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCch
Q 010881 345 RAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGD-----VDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 345 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~ 400 (498)
+.|++++|.+.|++. ...|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999999999999998 77785 5677777777766555 23333444444444444443
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=8.6e-10 Score=89.19 Aligned_cols=123 Identities=13% Similarity=0.019 Sum_probs=102.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 010881 292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLG 369 (498)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 369 (498)
|...+...|++++|+..+.+.... .|+ +...+..+...|.+.|++++|.+.|++. .+.| +..+|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~-----------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~ 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQ-----------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHH-----------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--Ccc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344556678899999999887553 222 3566778999999999999999999998 5556 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH-HHhhhh
Q 010881 370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV-RRGMED 427 (498)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 427 (498)
.+...|...|++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988776 466654
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=1.4e-08 Score=79.18 Aligned_cols=109 Identities=7% Similarity=-0.058 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D 364 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 364 (498)
..+......|.+.|++++|+..|++.++. .|+ +..+|..+..+|.+.|++++|+..+++. .+.| +
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPE-----------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 34556667777778888888888777764 333 5677777788888888888888887776 4344 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
...|..+..++...|++++|++.|+++++++|++..++..+..+
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66777777778888888888888888888888877766666554
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=9.8e-09 Score=102.78 Aligned_cols=147 Identities=11% Similarity=-0.062 Sum_probs=107.9
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010881 198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 277 (498)
.|++++|...|++..+.. +-+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887652 2346678888888889999999999999988775 55678888899999999999999999
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---CCHHH
Q 010881 278 FDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---GMLEA 351 (498)
Q Consensus 278 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 351 (498)
|++..+ .+...+..+...|...|++++|...|++..+. .|+ +...+..+..++... |+.++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPE-----------EPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHhhccccHHH
Confidence 988764 45678888999999999999999999998875 333 577888899999998 99999
Q ss_pred HHHHHHhC
Q 010881 352 AKKVVREM 359 (498)
Q Consensus 352 A~~~~~~~ 359 (498)
|.+.+++.
T Consensus 147 A~~~~~~a 154 (568)
T 2vsy_A 147 LSAQVRAA 154 (568)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=3e-07 Score=89.61 Aligned_cols=202 Identities=6% Similarity=-0.110 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 202 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 281 (498)
+.+..+|++++... +-+...|...+.-+...|+.+.|..++++.... +.+...+...... .+.++. ...+.+..
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHH
Confidence 44667788777643 344556666666677778888888888888877 4444443322211 011111 11122211
Q ss_pred C----------C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-CC
Q 010881 282 P----------N--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-GM 348 (498)
Q Consensus 282 ~----------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 348 (498)
. . .....|-..+....+.+..+.|..+|.+. .. |. .+...|...+..-... ++
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~----------~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG----------VGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC----------CCHHHHHHHHHHHHHHHCC
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC----------CChHHHHHHHHHHHHHCCC
Confidence 1 0 01234666666666677788888888887 21 11 1334444333332233 36
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 349 LEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 349 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
.+.|..+|+.. ...-++..|...+......|+.+.|..+|+++ +.....+...+..-...|+.+.+..+++++.
T Consensus 336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888877 22223455666777777888888888888887 2345567777777777788888888777776
Q ss_pred h
Q 010881 427 D 427 (498)
Q Consensus 427 ~ 427 (498)
+
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=1.6e-08 Score=81.41 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+...|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++.+|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5778888999999999999999999998 4445 7888999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhC
Q 010881 410 ASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~ 428 (498)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=9.5e-08 Score=86.40 Aligned_cols=161 Identities=11% Similarity=-0.033 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHH
Q 010881 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTS-LISG 295 (498)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~ 295 (498)
+...+..+...+...|++++|...++.+.+.. +-+...+..+..+|...|++++|...++++.. |+...... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455666667777888888888888887775 66778889999999999999999999999876 44332222 2334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHH
Q 010881 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---NYVLGAL 371 (498)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 371 (498)
+...++.++|...+++.... .|+ +...+..+..++...|++++|...|.++ ...|+ ...+..+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~-----------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPE-----------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhc--CCc-----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 67788889999999998885 444 6889999999999999999999999998 44453 6788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 010881 372 LNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
+..+...|+.++|...|++.+.
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999988764
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=8e-09 Score=80.54 Aligned_cols=97 Identities=6% Similarity=0.003 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
....+......|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.++
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3678888999999999999999999998 4455 7889999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhC
Q 010881 410 ASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~ 428 (498)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=4.6e-08 Score=81.35 Aligned_cols=154 Identities=10% Similarity=0.030 Sum_probs=112.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHH-HHhcCCh
Q 010881 226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISG-LANHDQS 302 (498)
Q Consensus 226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~~~~ 302 (498)
....+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++.. |+...+..+... +...+..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence 3444556666666666666655543 55677888888889999999999999998875 333332222211 2233344
Q ss_pred HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc
Q 010881 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---NYVLGALLNACRVH 378 (498)
Q Consensus 303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~ 378 (498)
.+|...+++..+. .|+ +...+..+..++...|++++|...|+++ ...|+ ...+..+...+...
T Consensus 91 ~~a~~~~~~al~~--~P~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPD-----------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp CHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 4578888888874 344 5889999999999999999999999988 55554 55888899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 010881 379 GDVDLGKETVESLVE 393 (498)
Q Consensus 379 g~~~~A~~~~~~~~~ 393 (498)
|+.++|...|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999998764
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=1.4e-07 Score=81.86 Aligned_cols=198 Identities=12% Similarity=-0.035 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh---HHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFR-PN-HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII---LGTAI 261 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 261 (498)
.+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++...|++++|...|+.+.+.. +.+.. .+..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence 3444455556666666666666666553211 11 2344455555666666666666666655543 21221 23333
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh-----CCCC-ChHH
Q 010881 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY-----GIEP-GVQH 335 (498)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~-----~~~~-~~~~ 335 (498)
..++...|.. .+ ..|..+...+...|+.++|...|+++.+. .|+....... .+.. ....
T Consensus 85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence 3333322110 00 01111222223344555555555555442 2321000000 0000 0112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
...+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|++..
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 235677889999999999999998 33443 256888899999999999999999999998888653
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=1.7e-07 Score=80.45 Aligned_cols=130 Identities=11% Similarity=-0.113 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~ 336 (498)
.+..+...+...|++++|...|++...++...|..+...|...|++++|...|++.... .|+ +...+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~-----------~~~~~ 74 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKH-----------LAVAY 74 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc-----------chHHH
Confidence 34556778889999999999999998888889999999999999999999999999875 233 57889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 337 GCLVDLLGRAGMLEAAKKVVREM-PIEP-----------------DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 337 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
..+..+|...|++++|...|++. ...| ....+..+..+|...|++++|.+.++++++..|++
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999999999887 2222 23678889999999999999999999999999876
Q ss_pred c
Q 010881 399 E 399 (498)
Q Consensus 399 ~ 399 (498)
.
T Consensus 155 ~ 155 (213)
T 1hh8_A 155 R 155 (213)
T ss_dssp G
T ss_pred c
Confidence 3
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=4.3e-09 Score=96.37 Aligned_cols=164 Identities=12% Similarity=-0.042 Sum_probs=86.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhCC---CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hHHHHHH
Q 010881 228 TACAFLGALDQGRWIHAYVDRNGI---EL--DIILGTAIIDMYAKCGCIETACSVFDSMPN-----RDV----FAYTSLI 293 (498)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li 293 (498)
..+...|++++|...+....+... .+ ...+++.+..+|...|++++|...|++..+ .+. .+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777777766665544210 00 123555566666666666666666665442 122 2455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----
Q 010881 294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI---EPD---- 364 (498)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~---- 364 (498)
..|.. |++++|+..|++..+.. |+ .+-.+ ...++..+..+|.+.|++++|+..|++. .+ .++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~--~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVF--EN------EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHH--HH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHH--Hh------CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 56655 66666666666665531 11 00000 1345556666666666666666666655 11 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
...+..+...+...|++++|...|++++ ..|.....
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 1244444455555566666666666666 66655443
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=2.4e-08 Score=79.70 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++.+|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4667788889999999999999999998 4445 7888999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
...|++++|.+.+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=4.7e-07 Score=81.69 Aligned_cols=215 Identities=10% Similarity=-0.025 Sum_probs=165.4
Q ss_pred hCCC-HhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hhc
Q 010881 197 QVDL-FKEALEHFNYMQLCGFRPNHA-GIVGALTACAFLG--ALDQGRWIHAYVDRNGIELDIILGTAIIDMY----AKC 268 (498)
Q Consensus 197 ~~g~-~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 268 (498)
+.|. .++|+..++.++.. .|+.. .++.--..+...+ +++++...++.+.... +.+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3444 46888888888874 45544 4555555666667 8888888888888775 55666666554444 444
Q ss_pred ---CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881 269 ---GCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSA--SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV 340 (498)
Q Consensus 269 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 340 (498)
+++++++.+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. |. |...|+.-.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~-----------N~sAW~~R~ 187 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LK-----------NNSAWSHRF 187 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TT-----------CHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CC-----------CHHHHHHHH
Confidence 788999999988874 46778888777788888888 9999999999853 33 678888887
Q ss_pred HHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC---CCCchHHHHHHHH
Q 010881 341 DLLGRAGM------LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVD-LGKETVESLVERS---LDHEGVHVLLSNI 408 (498)
Q Consensus 341 ~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---~~~~~~~~~l~~~ 408 (498)
.++.+.+. ++++++.++++ ...| |...|+.+...+.+.|+.. .+..++.++.+.+ |.++.++..++.+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 77777776 89999999887 4455 8888988888888888744 4666888777766 7788889999999
Q ss_pred hHhcCCcchHHHHHHhhhh
Q 010881 409 YASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 409 ~~~~g~~~~a~~~~~~m~~ 427 (498)
|.+.|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 9999999999999999875
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=5.1e-09 Score=95.91 Aligned_cols=224 Identities=11% Similarity=-0.048 Sum_probs=154.4
Q ss_pred CCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc-
Q 010881 136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC- 214 (498)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 214 (498)
.|++++|.+++++..+.....+ +...++++.|...|.. ....|...|++++|...|.+..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~ 66 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAH 66 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4667788888765432111111 1114677777777654 467788999999999999987653
Q ss_pred ---CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC---CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881 215 ---GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGI---EL--DIILGTAIIDMYAKCGCIETACSVFDSMPN-- 283 (498)
Q Consensus 215 ---g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 283 (498)
+-.+ -..+|..+...|...|++++|...++...+... .+ ...++..+..+|.. |++++|...|++..+
T Consensus 67 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~ 145 (307)
T 2ifu_A 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF 145 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 2111 134778888889999999999999998765421 12 13567788888988 999999999988764
Q ss_pred ---CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 010881 284 ---RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG-VQHYGCLVDLLGRAGMLEAAKKV 355 (498)
Q Consensus 284 ---~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 355 (498)
.+ ..++..+...|...|++++|+..|++.... .|+. +..+. ..++..++.++...|++++|...
T Consensus 146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~------~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM--YKEM------ENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHc------CChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 457888999999999999999999999885 2220 11111 23677777888889999999999
Q ss_pred HHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 010881 356 VREMPIEPD------NYVLGALLNACRVHGDVDLGKE 386 (498)
Q Consensus 356 ~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 386 (498)
|++.-..|+ ......++.++ ..|+.+.+.+
T Consensus 218 ~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 988523332 12344455544 5667655555
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=8.7e-08 Score=82.30 Aligned_cols=127 Identities=12% Similarity=0.026 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN 365 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 365 (498)
.+..+...+...|++++|...|++.. .|+...+..+..+|...|++++|...|++. ...| +.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 45567778889999999999998863 235789999999999999999999999988 3334 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----------------hHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHE----------------GVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
..|..+...+...|++++|++.++++++..|.+. ..+..++.++...|++++|.+.+++..+..
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999888877 889999999999999999999999988754
Q ss_pred c
Q 010881 430 V 430 (498)
Q Consensus 430 ~ 430 (498)
.
T Consensus 152 p 152 (213)
T 1hh8_A 152 S 152 (213)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=4.3e-07 Score=82.41 Aligned_cols=160 Identities=9% Similarity=-0.006 Sum_probs=121.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881 261 IIDMYAKCGCIETACSVFDSMPNR-----D----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP 331 (498)
Q Consensus 261 l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~ 331 (498)
.+..+...|++++|...+++..+. + ...+..+...+...+++++|+..|++........++ ..-
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~-------~~~ 153 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-------VYQ 153 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC-------TTH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc-------HHH
Confidence 467788899999999999886541 1 113334666777788999999999999884322220 001
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-----PI---EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH---- 398 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---- 398 (498)
...+++.+..+|...|++++|...|+++ .. .+ ...++..+...|...|++++|...++++++..+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 1447899999999999999999999887 11 11 23477888999999999999999999999865332
Q ss_pred --chHHHHHHHHhHhcCC-cchHHHHHHhhhh
Q 010881 399 --EGVHVLLSNIYASTEQ-WNGVEKVRRGMED 427 (498)
Q Consensus 399 --~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~ 427 (498)
..++..++.++.+.|+ +++|.+.+++..+
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4578899999999995 5999999888764
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=7.6e-08 Score=78.82 Aligned_cols=128 Identities=9% Similarity=-0.019 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D 364 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 364 (498)
..+..+...+...|++++|...|.+..+. .|+ +..++..+..++...|++++|...+++. ...| +
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 45677788889999999999999998874 333 5788999999999999999999999988 3344 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH--HHhHhcCCcchHHHHHHhhhh
Q 010881 365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS--NIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 427 (498)
...|..+...+...|++++|...++++++..|.+...+..+. ..+...|++++|.+.++...+
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 788999999999999999999999999999999887775444 448889999999999887754
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=1.5e-07 Score=80.61 Aligned_cols=158 Identities=8% Similarity=-0.029 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHH----------------HHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881 155 ISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSA----------------MINGYVQVDLFKEALEHFNYMQLCG 215 (498)
Q Consensus 155 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g 215 (498)
..+......+.+.|++++|+..|++.... +...|.. +..+|.+.|++++|+..|++..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566778999999999999988643 3344555 5666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--HHHHHHHHhhCCCCChh--HHHH
Q 010881 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC--IETACSVFDSMPNRDVF--AYTS 291 (498)
Q Consensus 216 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~ 291 (498)
+-+...+..+...+...|++++|...|+.+.+.. +.+..++..+..+|...|+ ...+...++.+..++.. .+..
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 2234455555555666666666666666665554 4445555555555544332 23344444444443322 1222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 010881 292 LISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
+..++...|++++|...|++..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 23333444455555555554443
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=3.7e-06 Score=81.91 Aligned_cols=346 Identities=10% Similarity=0.010 Sum_probs=212.0
Q ss_pred hHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCC-chHHHHHHHHhHHC-CCCC-CcchHHHHH
Q 010881 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNE-PIKAFALYKQMLRS-DFLP-NNYTFSFIL 95 (498)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~~p-~~~~~~~ll 95 (498)
.+|...+..|-. |+++.|+.+|++.. .|++..|...+....+.++ .+....+|+..... |..| +...|...+
T Consensus 16 ~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 444555555533 67999999998855 4788888888887776653 45677788887664 4333 455566666
Q ss_pred HHHH----ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------CCChhhHHHHhhccCC----CCh
Q 010881 96 RACA----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT-------------CNCMDPARKLFDMSVN----RDV 154 (498)
Q Consensus 96 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~----~~~ 154 (498)
..+. ..++.+.+..+|++++......-...|......-.. .+.+..|..+++.... .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 5543 245678889999998874222112222222211111 1122223333332211 133
Q ss_pred hhHHHHHHHHHccC----C---HHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 010881 155 ISWTSLINGYAKSG----Q---ISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV 224 (498)
Q Consensus 155 ~~~~~li~~~~~~~----~---~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 224 (498)
..|...+.--...+ + .+.+..+|+++.. .+...|...+..+.+.|+.++|..+|++.... |....+.
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHH
Confidence 35555444332211 0 2345567776653 25677888888889999999999999999987 5443332
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC---------C---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHH
Q 010881 225 GALTACAFLGALDQGRWIHAYVDRNG---------I---ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD--VFAYT 290 (498)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 290 (498)
.. +......++. ++.+.+.- . .....+|...++.+.+.++.+.|..+|+++..+. ...|-
T Consensus 250 ~~---y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i 323 (493)
T 2uy1_A 250 LY---YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFI 323 (493)
T ss_dssp HH---HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HH---HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHH
Confidence 22 2221111111 22222211 0 1123567777777778889999999999884332 22332
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010881 291 SLISGLA-NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG 369 (498)
Q Consensus 291 ~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 369 (498)
.....-. ..++.+.|..+|+...+.- |+ +...+...++...+.|+.+.|..+|+++. .....|.
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~--~~-----------~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~ 388 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKH--PD-----------STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWD 388 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHC--TT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHC--CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHH
Confidence 2222112 2346999999999998852 33 34566777888889999999999999983 3577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 370 ALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
..+..-...|+.+.+..+++++.+
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888889999999999998875
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.7e-08 Score=77.51 Aligned_cols=98 Identities=8% Similarity=-0.041 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|+++..+..++.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3567888899999999999999999998 4445 7889999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
...|++++|...+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999887644
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=3.2e-07 Score=78.80 Aligned_cols=170 Identities=11% Similarity=-0.048 Sum_probs=97.8
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhhHHHHhh
Q 010881 72 AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN----CMDPARKLFD 147 (498)
Q Consensus 72 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~ 147 (498)
|++.|++..+.| +...+..+-..+...+++++|..+|++..+.| +...+..|..+|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555432 44445555555555566666666666655543 33444445555554 4 5556666555
Q ss_pred ccCCC-ChhhHHHHHHHHHc----cCCHHHHHHHHhhCCCCC-----hhHHHHHHHHHHh----CCCHhHHHHHHHHHHH
Q 010881 148 MSVNR-DVISWTSLINGYAK----SGQISIARQMFDKMPEKN-----AVSWSAMINGYVQ----VDLFKEALEHFNYMQL 213 (498)
Q Consensus 148 ~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 213 (498)
+..++ ++.++..|...|.. .+++++|+..|++..+.+ ..++..|...|.. .+++++|+..|++..+
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 54332 44555555555554 566777777776665432 4666677777776 6777778777777776
Q ss_pred cCCCCCHHHHHHHHHHHhcc-C-----ChHHHHHHHHHHHHhC
Q 010881 214 CGFRPNHAGIVGALTACAFL-G-----ALDQGRWIHAYVDRNG 250 (498)
Q Consensus 214 ~g~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 250 (498)
. ..+...+..+...|... | +.++|...++...+.|
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5 22333444555555432 2 6777777777777766
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=2.3e-07 Score=71.53 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-C
Q 010881 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-P 363 (498)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p 363 (498)
...|..+...+...|++++|...++++... .|+ +..++..+...+...|++++|...++++ ... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPN-----------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 456777888888899999999999998875 233 5778888999999999999999999887 323 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE 413 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (498)
+..++..+...+...|++++|...++++++..|+++..+..++.++...|
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 67788889999999999999999999999999998888888887776544
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=1.2e-07 Score=74.28 Aligned_cols=117 Identities=9% Similarity=-0.029 Sum_probs=94.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+...|..+...+...|++++|...|++..+. .|+ +...+..+..++...|++++|...+++. ...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPK-----------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTT-----------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4556777888888888999999988888764 333 5778888888899999999999988887 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ 414 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (498)
+...+..+...+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 677888888889999999999999999999988888888888888877653
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=2.4e-07 Score=72.15 Aligned_cols=119 Identities=10% Similarity=-0.013 Sum_probs=102.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+...+..+...+...|++++|...+++.... .|+ +...+..+..++...|++++|...+++. ...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPA-----------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc
Confidence 3456777888889999999999999998874 233 5788999999999999999999999987 3344
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (498)
+...+..+...+...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 57888889999999999999999999999999999989999999998888764
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=7.5e-08 Score=89.19 Aligned_cols=140 Identities=10% Similarity=0.004 Sum_probs=112.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCch---hhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---MSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM- 359 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 359 (498)
+...+..+...+.+.|++++|+..|++..+. .|+.. ........| ...+|..+..+|.+.|++++|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457777888888999999999999998875 23210 000000000 1578999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchH-HHHHHhhh
Q 010881 360 PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV-EKVRRGME 426 (498)
Q Consensus 360 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 426 (498)
.+.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++...|++++| ..+++.|.
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 7889999999999999999999999999999999999999999999999999998 44666664
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=2.1e-08 Score=85.27 Aligned_cols=160 Identities=11% Similarity=-0.030 Sum_probs=110.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC------
Q 010881 262 IDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG------ 332 (498)
Q Consensus 262 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~------ 332 (498)
+......|+++.+.+.++.-... ....+..+...+...|++++|...|++.... .|+. .-...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~------~~~~~~~~~~~ 82 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHT------EEWDDQILLDK 82 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTC------TTCCCHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcc------cccchhhHHHH
Confidence 33444556666666666544321 3456777888899999999999999999874 2221 00001
Q ss_pred -----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 333 -----VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 333 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
...+..+..+|...|++++|...+++. ...| +...+..+..+|...|++++|+..|+++++..|++..++..+
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 278889999999999999999999988 4345 788899999999999999999999999999999999999999
Q ss_pred HHHhHhcCCcchHH-HHHHhhhhCC
Q 010881 406 SNIYASTEQWNGVE-KVRRGMEDNE 429 (498)
Q Consensus 406 ~~~~~~~g~~~~a~-~~~~~m~~~~ 429 (498)
..++...++.+++. ..+..|...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998888877 5565554443
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=3.5e-07 Score=82.95 Aligned_cols=163 Identities=8% Similarity=-0.078 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881 256 ILGTAIIDMYAKCGCIETACSVFDSMPN---RDV------FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326 (498)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 326 (498)
..+...+..+...|++++|.+.++...+ ... ..+..+...+...|++++|+..+++.........
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------ 149 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI------ 149 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC------
Confidence 3445567778889999999888875432 111 2344456667888999999999999876432211
Q ss_pred hCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 327 YGIEP--GVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEPD-----NYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 327 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
.+ ...+|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..++++++..
T Consensus 150 ---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 150 ---DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp ---CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11 2568999999999999999999999876 11222 2588889999999999999999999998754
Q ss_pred CC------CchHHHHHHHHhHhcCCcchH-HHHHHhhhh
Q 010881 396 LD------HEGVHVLLSNIYASTEQWNGV-EKVRRGMED 427 (498)
Q Consensus 396 ~~------~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 427 (498)
+. ...++..++.+|.+.|++++| ...+++...
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 32 145688999999999999999 777877654
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=4.5e-08 Score=88.25 Aligned_cols=191 Identities=12% Similarity=-0.002 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA 297 (498)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 297 (498)
..+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666666553 44677778888888888888888888887765 35667888888899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010881 298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 377 (498)
..|++++|...|++..+. .|+. ........+..+ ...+...+.. ........+......+ ..+ .
T Consensus 84 ~~g~~~~A~~~~~~al~l--~p~~------~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~ 147 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL--AKEQ------RLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-I 147 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH--HHHT------TCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-H
T ss_pred HcCCHHHHHHHHHHHHHh--Cccc------hhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-H
Confidence 999999999999888764 2221 000011111111 1111111111 2222222333333333 222 3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc-CCcchHHHHHHhhhhC
Q 010881 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST-EQWNGVEKVRRGMEDN 428 (498)
Q Consensus 378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 428 (498)
.|+.++|++.++++++.+|++......+...+.+. +++++|.++|.+..+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 68999999999999999998876777777777766 7789999999888754
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=3.5e-07 Score=82.96 Aligned_cols=212 Identities=7% Similarity=-0.012 Sum_probs=126.9
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcch---HHHHHHHHHhCCCchHHHHHHHHhHHC
Q 010881 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFI---WNTMIRGFAEKNEPIKAFALYKQMLRS 82 (498)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~ 82 (498)
.....+......|+..+...+...+.-. ++ .++..-...+... +...+..+...|++++|..++++..+.
T Consensus 32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~----~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 32 SEVSRIESGAVYPSMDILQGIAAKLQIP----II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHTCC----TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCcC----HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3445555555677777777777766554 22 2333222222322 333467788899999999999998773
Q ss_pred C-CCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-c----hhHHHHHHHHHHhCCChhhHHHHhhccCCC
Q 010881 83 D-FLPNNY----TFSFILRACADTSCLFVGLICHAQVIRLGWES-Y----DFVLNGLLHLYATCNCMDPARKLFDMSVNR 152 (498)
Q Consensus 83 ~-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 152 (498)
. ..|+.. .+..+...+...++++.|...++++++..... + ..+++.+..+|...|++++|...|++.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a--- 181 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI--- 181 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 2 122211 22345556667788999999999988854332 2 225777888888888888888777543
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCCC-HHHHH
Q 010881 153 DVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRPN-HAGIV 224 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~ 224 (498)
++.++..... ...++..+...|.+.|++++|+..+++..+. +..+. ...|.
T Consensus 182 ---------------------l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 182 ---------------------LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp ---------------------HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred ---------------------HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3333333111 2235566666777777777777766665432 21222 44566
Q ss_pred HHHHHHhccCC-hHHHHHHHHHHHH
Q 010881 225 GALTACAFLGA-LDQGRWIHAYVDR 248 (498)
Q Consensus 225 ~ll~~~~~~~~-~~~a~~~~~~~~~ 248 (498)
.+..++...|+ +++|...++....
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66666666663 4677766666543
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=4e-08 Score=79.01 Aligned_cols=105 Identities=9% Similarity=-0.078 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+...+..+...+...|++++|...|++.... .|+ +...|..+..+|...|++++|...|++. .+.|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHY-----------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--Ccc-----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4456777888899999999999999999874 343 6888999999999999999999999998 4445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
+...+..+..+|...|++++|+..|+++++..|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 677888899999999999999999999999999877553
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=6.9e-08 Score=77.61 Aligned_cols=102 Identities=13% Similarity=-0.043 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+...+..+...+.+.|++++|...|++.... .|+ +...|..+..+|...|++++|...|++. .+.|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~-----------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFY-----------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 4557778888899999999999999999885 444 6889999999999999999999999998 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
++..|..+..+|...|++++|+..|++++++.|+++
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 677888999999999999999999999999998864
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.68 E-value=1.2e-07 Score=78.77 Aligned_cols=121 Identities=7% Similarity=0.070 Sum_probs=101.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010881 296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLN 373 (498)
Q Consensus 296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 373 (498)
+...|++++|...+++.... .|+ +...|..+..+|...|++++|...|++. ...| +...+..+..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 86 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQ-----------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT 86 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCS-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34568889999999998875 233 5789999999999999999999999998 3334 6778888888
Q ss_pred H-HHhcCCH--HHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 374 A-CRVHGDV--DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 374 ~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
. +...|++ ++|...++++++.+|+++..+..++.++...|++++|...+++..+..
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 7789998 999999999999999999999999999999999999999999988754
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=4.8e-06 Score=75.11 Aligned_cols=223 Identities=8% Similarity=-0.038 Sum_probs=148.8
Q ss_pred HHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcc---CChHH
Q 010881 171 SIARQMFDKMPE--K-NAVSWSAMINGYVQVD--LFKEALEHFNYMQLCGFRPNHAGIVGALTAC----AFL---GALDQ 238 (498)
Q Consensus 171 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---~~~~~ 238 (498)
++|+..++.+.. | +..+|+.-...+...| ++++++..++.+..... -+...++.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 455555555432 2 3444555555555555 67777777777766431 1222333222222 233 56777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH--HHHHHHhhCCC---CChhHHHHHHHHHHhcCC------hHHHHH
Q 010881 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE--TACSVFDSMPN---RDVFAYTSLISGLANHDQ------SASAIE 307 (498)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~~~------~~~a~~ 307 (498)
+..+++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+ .|...|+.-...+...++ ++++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 777777777665 666677776666666677766 77777777764 455677666666666665 788999
Q ss_pred HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCH
Q 010881 308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA-AKKVVREM-PI----EPDNYVLGALLNACRVHGDV 381 (498)
Q Consensus 308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~ 381 (498)
.+.++... .|+ |...|+.+...+.+.|+..+ +..+..++ .. ..+...+..++..|.+.|+.
T Consensus 208 ~~~~aI~~--~p~-----------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 208 YVKDKIVK--CPQ-----------NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp HHHHHHHH--CSS-----------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--CCC-----------CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 99988874 344 68899999989988887544 55566666 22 23788889999999999999
Q ss_pred HHHHHHHHHHHh-cCCCCchHHHHHHHH
Q 010881 382 DLGKETVESLVE-RSLDHEGVHVLLSNI 408 (498)
Q Consensus 382 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~ 408 (498)
++|.++++.+.+ .+|.....+...+..
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999999997 789887777655443
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=1.5e-06 Score=78.74 Aligned_cols=169 Identities=7% Similarity=-0.010 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-c----chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC---c--hh
Q 010881 55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-N----YTFSFILRACADTSCLFVGLICHAQVIRLGWES---Y--DF 124 (498)
Q Consensus 55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~--~~ 124 (498)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++.++..... . ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455556666666666666666655321100 0 011223333444555555555555554432110 0 22
Q ss_pred HHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCH
Q 010881 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLF 201 (498)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 201 (498)
+++.+...|...|++++|...|++ |.++++..... ...+++.+...|...|++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~k------------------------al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQ------------------------ILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------------------------HHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 344444444444444444444432 22222222221 125777888888889999
Q ss_pred hHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHhccCChHHH-HHHHHHHH
Q 010881 202 KEALEHFNYMQLCG----FRPN-HAGIVGALTACAFLGALDQG-RWIHAYVD 247 (498)
Q Consensus 202 ~~a~~~~~~m~~~g----~~p~-~~~~~~ll~~~~~~~~~~~a-~~~~~~~~ 247 (498)
++|+..+++..+.. .... ..+|..+...+...|++++| ...++...
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99998888876431 1111 44566666667777777777 55555543
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=2e-07 Score=79.25 Aligned_cols=155 Identities=15% Similarity=0.025 Sum_probs=105.7
Q ss_pred HhcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHH
Q 010881 266 AKCGCIETACS---VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVD 341 (498)
Q Consensus 266 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~ 341 (498)
...|++++|.+ .+..-......++..+...+...|++++|...+++....-... +..| ...++..+..
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--------GDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Confidence 34567777777 5544333345567777777888888888888887776521000 1111 3567888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCc----hHHHHHH
Q 010881 342 LLGRAGMLEAAKKVVREM-PI---EP-D----NYVLGALLNACRVHGDVDLGKETVESLVERS--LDHE----GVHVLLS 406 (498)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~l~ 406 (498)
.+...|++++|...+++. .. .+ + ...+..+...+...|++++|...++++++.. ..++ .++..++
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 889999999998888876 11 22 2 3457777888899999999999999988643 2222 2356888
Q ss_pred HHhHhcCCcchHHHHHHhhhhC
Q 010881 407 NIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
.++...|++++|.+.+++..+.
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999998887653
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.65 E-value=2.1e-07 Score=70.32 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHH
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD--HEGVHVLLSN 407 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~ 407 (498)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4677888999999999999999999988 3334 6788899999999999999999999999999999 9999999999
Q ss_pred HhHhc-CCcchHHHHHHhhhhCCc
Q 010881 408 IYAST-EQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 408 ~~~~~-g~~~~a~~~~~~m~~~~~ 430 (498)
++... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999987654
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=4.1e-07 Score=74.47 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=90.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+...|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|++...+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5778899999999999999999999998 4445 7889999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
...|++++|...|++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 99999999999999987643
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=1.2e-07 Score=73.25 Aligned_cols=96 Identities=11% Similarity=-0.072 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34666788899999999999999998 4456 788899999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHhhhhCC
Q 010881 412 TEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 412 ~g~~~~a~~~~~~m~~~~ 429 (498)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=4.2e-07 Score=70.62 Aligned_cols=110 Identities=10% Similarity=0.001 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D 364 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 364 (498)
..|..+...+...|++++|+..|++..+. .|+ +...|..+..++.+.|++++|...+++. .+.| +
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE-----------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45677788899999999999999998875 343 5789999999999999999999999988 4455 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHh
Q 010881 365 NYVLGALLNACRVHGDVDLGKETVESLVERS------LDHEGVHVLLSNIY 409 (498)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~ 409 (498)
...|..+..++...|++++|...++++++.+ |.+......+..+.
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8889999999999999999999999999999 77776666665544
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=2.8e-07 Score=81.24 Aligned_cols=183 Identities=8% Similarity=-0.080 Sum_probs=131.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCCHHHHHHHHhhCCC--C-------C----------
Q 010881 232 FLGALDQGRWIHAYVDRNGIELDIILGTAI-------IDMYAKCGCIETACSVFDSMPN--R-------D---------- 285 (498)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~---------- 285 (498)
..++...|.+.|..+.+.. +-....|..+ ...+...++..++...+..... | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3567777777777777665 4555666666 4555555555555555554443 1 1
Q ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 010881 286 -----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360 (498)
Q Consensus 286 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 360 (498)
...+-.+...+...|++++|.++|..+...+ |+ +. ....+...+.+.+++++|+..|+...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~-----------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SE-----------HL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CH-----------HH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc-----------hH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 1123445677888999999999999886532 33 23 66777789999999999999999873
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 361 IEPD----NYVLGALLNACRVHGDVDLGKETVESLVERS--LD-HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 361 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
..|+ ...+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....
T Consensus 163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3333 2367778889999999999999999998533 33 34567889999999999999999999998643
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=3.2e-07 Score=72.37 Aligned_cols=99 Identities=9% Similarity=-0.056 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 36889999999999999999999999987 4345 688899999999999999999999999999999999999999999
Q ss_pred hHhcCCcchHHHHHHhhhhCC
Q 010881 409 YASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 409 ~~~~g~~~~a~~~~~~m~~~~ 429 (498)
+...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999987654
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=2.8e-07 Score=73.39 Aligned_cols=116 Identities=10% Similarity=-0.034 Sum_probs=92.8
Q ss_pred HHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 010881 277 VFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK 353 (498)
Q Consensus 277 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 353 (498)
.|+.+... +...+..+...+...|++++|...|++.... .|+ +...|..+..+|...|++++|.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHY-----------DARYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCc-----------cHHHHHHHHHHHHHHhhHHHHH
Confidence 45555543 3345666777889999999999999999874 344 6888999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 354 KVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 354 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
..|++. ...| +...+..+..++...|++++|...|+++++..|+++......
T Consensus 73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999998 4445 677788899999999999999999999999999887655443
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=5.8e-07 Score=73.57 Aligned_cols=109 Identities=15% Similarity=0.021 Sum_probs=93.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+...+..+...+...|++++|+..|++..+. .|+ +...|..+..+|...|++++|+..|++. .+.|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APA-----------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4456778888899999999999999999885 343 5889999999999999999999999998 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
+...|..+..+|...|++++|...|++++++.|++...+....
T Consensus 77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 6888999999999999999999999999999999987655443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=1e-06 Score=67.07 Aligned_cols=110 Identities=12% Similarity=0.027 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 010881 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP- 363 (498)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 363 (498)
+..+..+...+...|++++|...|++.... .|+ +...+..+..++...|++++|...+++. ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPH-----------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 345666677777788888888888877764 232 4667777777888888888888888776 3334
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI 408 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 408 (498)
+...+..+..++...|++++|.+.++++++.+|+++..+..++.+
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 566777777778888888888888888888888777666665544
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.58 E-value=2e-07 Score=72.63 Aligned_cols=95 Identities=8% Similarity=-0.061 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------HHH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG-------VHV 403 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~ 403 (498)
...+..+...+.+.|++++|+..|++. .+.| +...|..+..+|...|++++|++.++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 567888999999999999999999998 5556 6888999999999999999999999999998877643 567
Q ss_pred HHHHHhHhcCCcchHHHHHHhhhh
Q 010881 404 LLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.++.++...|++++|++.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999988765
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=4.9e-07 Score=70.69 Aligned_cols=99 Identities=10% Similarity=-0.059 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881 330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN 407 (498)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 407 (498)
..+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|+..++++++..|.+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 346888999999999999999999999998 5555 78889999999999999999999999999999999999999999
Q ss_pred HhHhcCCcchHHHHHHhhhhC
Q 010881 408 IYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 408 ~~~~~g~~~~a~~~~~~m~~~ 428 (498)
++...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=5e-06 Score=73.30 Aligned_cols=136 Identities=12% Similarity=0.026 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC--C
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP--G 332 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~--~ 332 (498)
+...+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... |+ | .
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d----------~~~~ 170 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PD----------KFLA 170 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SC----------HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CC----------cccH
Confidence 445677788899999999999999875 43336666667889999999999999865432 11 1 1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM--PIE-PD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
...+..+..++...|++++|+..|++. +-. |. .........++.+.|+.++|..+|+++...+|+ ......|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 347888899999999999999999998 322 53 346677788899999999999999999999998 65555553
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.54 E-value=4.2e-07 Score=88.39 Aligned_cols=119 Identities=8% Similarity=-0.014 Sum_probs=100.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881 293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA 370 (498)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 370 (498)
...+.+.|++++|...|++..+. .|+ +..+|..+..+|.+.|++++|...+++. ...| +...|..
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 79 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34566789999999999999885 344 5889999999999999999999999998 5556 6888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH--hHhcCCcchHHHHHHh
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI--YASTEQWNGVEKVRRG 424 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 424 (498)
+..+|...|++++|++.++++++..|++...+..++.+ +.+.|++++|++.+++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999888888887 8889999999999983
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=1e-06 Score=67.03 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567888999999999999999999998 3344 7888899999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887643
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=8.8e-07 Score=68.17 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA 410 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (498)
...+..+...+...|++++|...++++ ...| +..++..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 678888999999999999999999998 3334 68888999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHhhhhC
Q 010881 411 STEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 411 ~~g~~~~a~~~~~~m~~~ 428 (498)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.2e-06 Score=69.84 Aligned_cols=97 Identities=8% Similarity=-0.058 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
+...+..+...+...|++++|...|++. ...|+ ...|..+...|...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 6788899999999999999999999998 66787 678888999999999999999999999999999999999999
Q ss_pred HHhHhcCCcchHHHHHHhhhhC
Q 010881 407 NIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
.++...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=2.6e-07 Score=76.70 Aligned_cols=123 Identities=7% Similarity=0.033 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH-
Q 010881 267 KCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL- 342 (498)
Q Consensus 267 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~- 342 (498)
..|++++|...++.... .+...|..+...|...|++++|...|++.... .|+ +...+..+..+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~la~~l 88 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGE-----------NAELYAALATVL 88 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCS-----------CHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHHHH
Confidence 34555666665555432 35566777777777788888888888887764 233 46777777777
Q ss_pred HhhcCCH--HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 343 LGRAGML--EAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 343 ~~~~g~~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
+...|++ ++|...+++. ...| +...+..+...+...|++++|...++++++..|+++...
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 7788887 8888888887 3345 577788888888999999999999999999888876433
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=1.6e-05 Score=72.47 Aligned_cols=218 Identities=9% Similarity=-0.037 Sum_probs=153.2
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-C-C
Q 010881 195 YVQVDLFKEALEHFNYMQLCGFRPNHA-GIVGALTACAFLG-ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-G-C 270 (498)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 270 (498)
..+.+..++|++++++++.. .|+.. .++.--..+...+ .++++..+++.+.... +.+..+|+.-..++... + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 33445557888888888875 45444 4555555555666 5888888888888775 66777887776666666 6 7
Q ss_pred HHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881 271 IETACSVFDSMPNR---DVFAYTSLISGLANHDQSA--------SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL 339 (498)
Q Consensus 271 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l 339 (498)
+++++.+++++.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.. |. |...|+..
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~-----------N~SAW~~R 207 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GR-----------NNSAWGWR 207 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TT-----------CHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CC-----------CHHHHHHH
Confidence 88999999988863 5567766555555555565 8999999998853 33 68899999
Q ss_pred HHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHH
Q 010881 340 VDLLGRAGM-------LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV--------------------DLGKETVES 390 (498)
Q Consensus 340 ~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~ 390 (498)
..++.+.++ ++++++.++++ ...| |...|+.+-..+.+.|+. ....+....
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFP 287 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CC
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHH
Confidence 888888876 78899998887 4456 778887777767666653 223333333
Q ss_pred HHhcC------CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 391 LVERS------LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 391 ~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+.... +..+.+...|+.+|...|+.++|.++++.+.+.
T Consensus 288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 33222 355566778999999999999999999998643
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.6e-06 Score=67.87 Aligned_cols=117 Identities=11% Similarity=-0.041 Sum_probs=95.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+...+..+...+...|++++|...|++..+. .|+. .-....+..+..+|...|++++|...+++. ...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATP--------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccc--------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 5667888888899999999999999998764 2220 001678888999999999999999999987 4345
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
+...+..+..++...|++++|...++++++..|++...+..+..+..+
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 678888899999999999999999999999999988777777665443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=1.4e-06 Score=68.68 Aligned_cols=101 Identities=10% Similarity=-0.108 Sum_probs=86.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 010881 284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE 362 (498)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 362 (498)
.+...|..+...+...|++++|...|.+.... .|+ +...|..+..++...|++++|...+++. ...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPL-----------VAVYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcC-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45677888888899999999999999998875 233 5788999999999999999999999988 434
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 363 P-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 363 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
| +...+..+..++...|++++|...++++++..|+
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5 6788899999999999999999999999998877
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.46 E-value=6.4e-07 Score=71.26 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD--------N-----YVLGALLNACRVHGDVDLGKETVESLVER---- 394 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 394 (498)
...+......+.+.|++++|+..|++. .+.|+ . ..|..+..++...|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 455677788899999999999999988 33343 2 38999999999999999999999999999
Q ss_pred ---CCCCchHH----HHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 395 ---SLDHEGVH----VLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 395 ---~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+|++...| +..+.++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999998764
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=1.7e-06 Score=73.37 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=86.1
Q ss_pred cCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHH
Q 010881 167 SGQISIARQ---MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGALDQ 238 (498)
Q Consensus 167 ~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~ 238 (498)
.|++++|.+ .+..-+.....++..+...+...|++++|...+++.... +..| ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455566655 443322234455666666666667777776666665541 1111 22345555566666677777
Q ss_pred HHHHHHHHHHh----CCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChH
Q 010881 239 GRWIHAYVDRN----GIE--LDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSA 303 (498)
Q Consensus 239 a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~ 303 (498)
|...+....+. +.. ....++..+...+...|++++|...+++... .+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 77666665443 101 1134456667777777777777777766542 12 224566777788888888
Q ss_pred HHHHHHHHHHH
Q 010881 304 SAIELFMRMQL 314 (498)
Q Consensus 304 ~a~~~~~~m~~ 314 (498)
+|...+++..+
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=1.4e-06 Score=84.20 Aligned_cols=141 Identities=10% Similarity=-0.009 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchh---hhhhCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 010881 286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM---SEIYGIE-PGVQHYGCLVDLLGRAGMLEAAKKVVREM-P 360 (498)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 360 (498)
...|..+...+.+.|++++|...|++.++. .|+... ....... .....|..+..+|.+.|++++|+..+++. .
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456777788888889999999999888774 222000 0000000 01578999999999999999999999998 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH-HHHhhhhC
Q 010881 361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK-VRRGMEDN 428 (498)
Q Consensus 361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~~ 428 (498)
+.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|+++++.+ .+++|..+
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445 788999999999999999999999999999999999999999999999999998774 56666543
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=1.5e-06 Score=70.83 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PI------------------EP-DNYVLGALLNACRVHGDVDLGKETVESLV 392 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 392 (498)
...+......+.+.|++++|...|++. .. .| +...|..+..+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567788899999999999999999887 32 22 34678888999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+++|+++.++..++.+|...|++++|...+++..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888764
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.41 E-value=1.2e-06 Score=67.41 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN 365 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 365 (498)
.+..+...+.+.|++++|...|++..+. .|+ +...|..+..++...|++++|+..|++. .+.| +.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPE-----------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4566777889999999999999999884 444 6889999999999999999999999998 5556 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
..+..+..++...|++++|+..++++++.+|++.
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 8889999999999999999999999999998764
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=7.3e-06 Score=66.73 Aligned_cols=127 Identities=9% Similarity=-0.078 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010881 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY 265 (498)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (498)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+....+.. +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777777888888888888777653 2345666677777777888888888888777765 55667777788888
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHH--HHHHhcCChHHHHHHHHHHHH
Q 010881 266 AKCGCIETACSVFDSMPN---RDVFAYTSLI--SGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~ 314 (498)
...|++++|...|+++.+ .+...+..+. ..+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888877653 2344443333 336677888888888776543
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=2.2e-06 Score=66.51 Aligned_cols=97 Identities=8% Similarity=-0.053 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4678888999999999999999999988 3334 7888899999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhC
Q 010881 410 ASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~ 428 (498)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=3.2e-06 Score=63.54 Aligned_cols=102 Identities=14% Similarity=-0.013 Sum_probs=85.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP 363 (498)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 363 (498)
+...+..+...+...|++++|...|++..+. .|+ +...+..+..++...|++++|...+++. ...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPE-----------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 4566777888888999999999999998875 233 5778889999999999999999999987 3334
Q ss_pred ---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 010881 364 ---DNYVLGALLNACRVH-GDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 364 ---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 399 (498)
+...+..+...+... |++++|.+.+++++...|+++
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 578888899999999 999999999999999988764
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=1.3e-06 Score=68.00 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-- 363 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-- 363 (498)
.++..+...+.+.|++++|+..|++.++. .|+ +...|..+..+|...|++++|++.+++. .+.|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~-----------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPS-----------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 45777888999999999999999999874 455 5889999999999999999999999887 2222
Q ss_pred --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 364 --D----NYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 364 --~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
+ ..+|..+..++...|++++|++.|+++++..|++
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 2 3467778889999999999999999999988764
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=1.6e-06 Score=67.50 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHH
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREM-PIEPD-N---YVLGALLNACRVHGDVDLGKETVESLVERSLDH---EGVHVLLSN 407 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 407 (498)
+..+...+...|++++|...|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 445678888999999999999988 33343 2 477788889999999999999999999999998 677999999
Q ss_pred HhHhcCCcchHHHHHHhhhhC
Q 010881 408 IYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 408 ~~~~~g~~~~a~~~~~~m~~~ 428 (498)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=3.6e-06 Score=78.81 Aligned_cols=132 Identities=10% Similarity=0.043 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc----hhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----SMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI 361 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 361 (498)
.+..+...+.+.|++++|+..|++.++.- |.. .........| +..+|..+..+|.+.|++++|+..+++. ..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 35555666667777777777777665410 000 0000000112 4688999999999999999999999998 66
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881 362 EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 362 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
.| +...|..+..+|...|++++|+..|++++++.|++...+..+..++...++.+++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 6888999999999999999999999999999999999999999999988888877653
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=9.6e-06 Score=62.82 Aligned_cols=111 Identities=6% Similarity=-0.011 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI---- 361 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 361 (498)
..|..+...+...|++++|...|++..... |+ +...+..+..++...|++++|...+++. ..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PT-----------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 456777788888999999999999887752 33 5778888899999999999999998887 22
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 362 EPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 362 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
.++ ..++..+...+...|++++|.+.++++++..| ++.....+..+...
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 222 67788888889999999999999999999888 45555566555443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=6.1e-06 Score=79.26 Aligned_cols=161 Identities=6% Similarity=-0.105 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881 258 GTAIIDMYAKCGCIETACSVFDSMPN-----RDV----FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG 328 (498)
Q Consensus 258 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 328 (498)
+..+...|...|++++|.+.+..+.+ ++. .+.+.+...+...|+.++|..++.+........ +
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~ 129 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------K 129 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------S
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------C
Confidence 45566667777777777776666543 111 122333333445677777777777765421000 1
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C
Q 010881 329 IEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-----P--IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERS---L 396 (498)
Q Consensus 329 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~ 396 (498)
..+ -..++..+...|...|++++|..++++. + -++ ...++..++..|...|++++|..++++++... +
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 111 2566777888888888888888888766 1 122 24567777788888888888888888887643 2
Q ss_pred CCc----hHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 397 DHE----GVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 397 ~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
+++ ..+..++..+...|++++|...+....
T Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 221 335566777778888888887776664
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=7.9e-06 Score=63.40 Aligned_cols=108 Identities=13% Similarity=0.036 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---
Q 010881 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD--- 364 (498)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--- 364 (498)
+..+...+...|++++|...|+++.+. .|+. ......+..+..++...|++++|...|++. ...|+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNG--------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSS--------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCC--------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc
Confidence 445667788999999999999999875 2331 011257888999999999999999999988 33443
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 365 -NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 365 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
...+..+..++...|++++|...++++++..|+++.......
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 667888889999999999999999999999999875544443
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=2.2e-06 Score=69.86 Aligned_cols=122 Identities=15% Similarity=0.037 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLE------GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P 360 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 360 (498)
.+......+.+.|++++|+..|.+.+.. .-.|+...... .-+.+...|..+..+|.+.|++++|+..+++. .
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE-LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH-HHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4455555666667777777666666553 00111000000 00114578999999999999999999999988 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHhH
Q 010881 361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE-GVHVLLSNIYA 410 (498)
Q Consensus 361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~ 410 (498)
+.| +...|..+..+|...|++++|...|+++++++|+++ .....+..+..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 455 688999999999999999999999999999999987 44445544433
No 175
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=5.3e-07 Score=68.04 Aligned_cols=94 Identities=7% Similarity=-0.038 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHH
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH------EGVHV 403 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~ 403 (498)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|++.++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4678888999999999999999999998 4445 78889999999999999999999999999999998 77788
Q ss_pred HHHHHhHhcCCcchHHHHHHhh
Q 010881 404 LLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~m 425 (498)
.++.++...|++++|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8899999999888887776554
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=2.5e-06 Score=66.22 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHH
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH-------EGVHV 403 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~ 403 (498)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 567888999999999999999999988 3334 78888899999999999999999999999988766 77888
Q ss_pred HHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 404 LLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 404 ~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
.++.++...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.31 E-value=9.7e-05 Score=67.01 Aligned_cols=218 Identities=9% Similarity=-0.064 Sum_probs=152.5
Q ss_pred HhCCCHh-HHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCC----------hHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 196 VQVDLFK-EALEHFNYMQLCGFRPNHAG-IVGALTACAFLGA----------LDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 196 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
.+.|.++ +|+.+++.+... .|+..| ++.--..+...+. ++++..+++.+.... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455554 778888888764 455444 3322222222221 567888888888775 678888887777
Q ss_pred HHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHH
Q 010881 264 MYAKCG--CIETACSVFDSMPN---RDVFAYTSLISGLANHDQ-SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYG 337 (498)
Q Consensus 264 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 337 (498)
++...+ .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+.++.+.. |+ |...|+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~-----------N~SAW~ 183 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FS-----------NYSSWH 183 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SC-----------CHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CC-----------CHHHHH
Confidence 777777 48999999998875 577788887777788888 589999999998853 33 678888
Q ss_pred HHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHH
Q 010881 338 CLVDLLGRA--------------GMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH-----------GDVDLGKETVES 390 (498)
Q Consensus 338 ~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~ 390 (498)
.....+.+. +.++++++.+.+. ...| |...|+.+-..+... +.++++++.+++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 777776655 4578899998887 4456 777776655555444 457899999999
Q ss_pred HHhcCCCCchHHHHHHH---HhHhcCCcchHHHHHHhhhhCC
Q 010881 391 LVERSLDHEGVHVLLSN---IYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 391 ~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
+++..|++.-.+..++. .....|..+++...+.++.+.+
T Consensus 264 lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 264 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 99999998544433332 2234577778888888887644
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=5.3e-07 Score=69.03 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=70.4
Q ss_pred hcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881 345 RAGMLEAAKKVVREM-PI---EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE 419 (498)
Q Consensus 345 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 419 (498)
..|++++|+..|++. .. .| +...+..+...|...|++++|+..++++++..|+++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 467888999999888 55 35 56778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhC
Q 010881 420 KVRRGMEDN 428 (498)
Q Consensus 420 ~~~~~m~~~ 428 (498)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888754
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=1.2e-06 Score=67.03 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=76.3
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010881 298 NHDQSASAIELFMRMQLEGV-VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNA 374 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 374 (498)
..|++++|+..|++..+.+. .|+ +...+..+..+|...|++++|...|++. ...| +...+..+..+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-----------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 46888999999999987531 122 5788999999999999999999999998 4445 68888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 375 CRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
+...|++++|+..++++++..|+++...
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999999999999999987554
No 180
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=9.9e-06 Score=74.84 Aligned_cols=129 Identities=12% Similarity=-0.068 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 010881 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--------------HAGIVGALTACAFLGALDQGRWIHAYVDRNG 250 (498)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (498)
...+..+...+.+.|++++|+..|++..+...... ...+..+..++...|++++|...++.+.+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555666666666777777777766665421111 3566666777777777777777777777664
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010881 251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASA-IELFMRMQL 314 (498)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 314 (498)
+.+...+..+..+|...|++++|...|+++.+ .+...+..+...+...|+.++| ...|+.|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777776653 3456677777777777777777 345555543
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=5.9e-05 Score=74.68 Aligned_cols=168 Identities=7% Similarity=-0.089 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhhCCC---CChhHHHHHHHHHHhcC--
Q 010881 236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC----------IETACSVFDSMPN---RDVFAYTSLISGLANHD-- 300 (498)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-- 300 (498)
.++|...++.+.... +-+..+|+.--.++...|+ ++++...++.+.+ ++..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 345566666666654 4445555555555555555 7888888887764 46667777777777888
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010881 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG-MLEAAKKVVREM-PIEP-DNYVLGALLNACRV 377 (498)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 377 (498)
++++++..++++.+. .|+ +..+|+.-..++.+.| .++++++.++++ ...| |...|+.....+..
T Consensus 124 ~~~~el~~~~k~l~~--d~~-----------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 124 NWARELELCARFLEA--DER-----------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh--ccc-----------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 669999999999885 333 6788988888888888 899999999988 6566 78888887777665
Q ss_pred c--------------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881 378 H--------------GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417 (498)
Q Consensus 378 ~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (498)
. +.++++++.+++++..+|++..+|..+...+.+.++.++
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 3 567999999999999999999999999999999988665
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=3.9e-06 Score=75.43 Aligned_cols=98 Identities=8% Similarity=-0.082 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+...|++++|...|++. ...| +...|..+...|...|++++|+..++++++.+|++..++..++.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999988 4455 7888999999999999999999999999999999999999999999
Q ss_pred HhcCCcchHHHHHHhhhhCC
Q 010881 410 ASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 410 ~~~g~~~~a~~~~~~m~~~~ 429 (498)
...|++++|...+++..+.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=1.4e-06 Score=80.60 Aligned_cols=140 Identities=11% Similarity=0.052 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC------CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM- 359 (498)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 359 (498)
..+..+...+.+.|++++|...|++.... .|+.......+ .......|..+..+|.+.|++++|+..+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666777788888888888887663 22210000000 0000136777888888888888888888877
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh-HhcCCcchHHHHHHhhhhC
Q 010881 360 PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY-ASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 360 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~ 428 (498)
...| +...|..+..+|...|++++|+..|++++++.|++..++..+..+. ...+..+++..+|++|.+.
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4345 6778888888888888888888888888888888877777777663 3446667777777777544
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.5e-05 Score=74.94 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=28.6
Q ss_pred HHHHccCCHHHHHHHHhhCCCC-----C---------------hhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881 162 NGYAKSGQISIARQMFDKMPEK-----N---------------AVSWSAMINGYVQVDLFKEALEHFNYMQL 213 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (498)
..+.+.|++++|++.|..+.+. + ..++..++..|...|++++|.+++..+..
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455566666666666655321 0 01245556666666666666666665543
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=2e-06 Score=69.62 Aligned_cols=133 Identities=12% Similarity=-0.017 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP 363 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 363 (498)
++..+...+...|++++|...+++..+...... .......++..+...+...|++++|...+++. .-.+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 556666777778888888888877765310000 00001357788888999999999999998876 1111
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 364 D----NYVLGALLNACRVHGDVDLGKETVESLVERSLD------HEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 364 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
+ ..++..+...+...|++++|.+.++++++..+. ....+..++.++...|++++|.+.+++..+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 456777888899999999999999998875321 234577889999999999999999988764
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.25 E-value=5.5e-06 Score=80.07 Aligned_cols=127 Identities=9% Similarity=0.024 Sum_probs=102.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CC
Q 010881 295 GLANHDQSASAIELFMRMQLEG---VVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM---------PI 361 (498)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~ 361 (498)
.+..+|++++|+.++++.++.. +.|+ .| ...+++.|..+|...|++++|..++++. +-
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADT---------NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4667899999999998887632 1222 22 4678999999999999999999998876 23
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchH---HHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 362 EP-DNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGV---HVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 362 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.| ...+++.|...|...|++++|+.+++++++ ++|+++.+ ...+..++...+++++|..+++++++...
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34 356789999999999999999999999986 68888755 44677888899999999999999987543
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00019 Score=65.51 Aligned_cols=225 Identities=11% Similarity=0.013 Sum_probs=134.1
Q ss_pred CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-C-ChHHHHH
Q 010881 168 GQISIARQMFDKMPE--K-NAVSWSAMINGYVQVD-LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL-G-ALDQGRW 241 (498)
Q Consensus 168 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~-~~~~a~~ 241 (498)
+..++|+++++++.. | +..+|+.--..+...| .+++++..++.+.... +-+...++.-...+... + +++++..
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 333455555555542 2 3444555444555555 3666666666666542 22333444433333333 4 5666666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHH--------HHHHHHhhCCC---CChhHHHHHHHHHHhcCC-------hH
Q 010881 242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIE--------TACSVFDSMPN---RDVFAYTSLISGLANHDQ-------SA 303 (498)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-------~~ 303 (498)
+++.+.+.. +.|..+|+.-.-++.+.|.++ ++++.++++.+ .|..+|+.....+.+.++ ++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 666666543 445555554444443333333 67777766654 466677777777666665 67
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-
Q 010881 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML--------------------EAAKKVVREM-PI- 361 (498)
Q Consensus 304 ~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~- 361 (498)
++++.+.++... .|+ |...|+.+-..+.+.|+. .+..+...++ +.
T Consensus 226 eELe~~~~aI~~--~P~-----------n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 226 DELIYILKSIHL--IPH-----------NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp HHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred HHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 888888888874 444 688888887777776653 3444444444 22
Q ss_pred ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCchHHHHHHH
Q 010881 362 ------EPDNYVLGALLNACRVHGDVDLGKETVESLV-ERSLDHEGVHVLLSN 407 (498)
Q Consensus 362 ------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~ 407 (498)
.++...+..++..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 3578888999999999999999999999987 456766555554443
No 188
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=2.5e-05 Score=65.93 Aligned_cols=96 Identities=5% Similarity=-0.157 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D----------------NYVLGALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
...+..+...+...|++++|...|++. ...| + ...|..+..+|...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 566778889999999999999999987 3223 2 278888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
.|++..++..++.+|...|++++|...|++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888754
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=1.3e-05 Score=77.97 Aligned_cols=84 Identities=7% Similarity=-0.077 Sum_probs=45.3
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 010881 230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAI 306 (498)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 306 (498)
+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...+++..+ .+..+|..+..+|...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344566666666666655553 33455555555555555555555555554432 23445555555555555555555
Q ss_pred HHHHHHHH
Q 010881 307 ELFMRMQL 314 (498)
Q Consensus 307 ~~~~~m~~ 314 (498)
..|++..+
T Consensus 95 ~~~~~al~ 102 (477)
T 1wao_1 95 RDYETVVK 102 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=4.8e-06 Score=66.23 Aligned_cols=116 Identities=11% Similarity=-0.074 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----
Q 010881 288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI---- 361 (498)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 361 (498)
.+......+...|++++|+..|++.++. .|+..........| +...|..+..++.+.|++++|+..+++. .+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4455667788899999999999999874 33300000000000 2348999999999999999999998887 55
Q ss_pred ---CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 362 ---EPD-NYVL----GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 362 ---~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
.|+ ...| .....++...|++++|+..|++++++.|++......+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 884 5677 8899999999999999999999999999887554433
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.00023 Score=64.63 Aligned_cols=243 Identities=11% Similarity=-0.008 Sum_probs=126.8
Q ss_pred HhCCChh-hHHHHhhccCCCCh---hhHHHHHHHHHccCC----------HHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881 134 ATCNCMD-PARKLFDMSVNRDV---ISWTSLINGYAKSGQ----------ISIARQMFDKMPE---KNAVSWSAMINGYV 196 (498)
Q Consensus 134 ~~~g~~~-~a~~~~~~~~~~~~---~~~~~li~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 196 (498)
.+.|.++ +|+++++.+...|+ .+|+.--..+...+. +++++.+++.+.. .+..+|+.-...+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456555 67888877664443 334432222222221 3444444444431 24444444444444
Q ss_pred hCC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010881 197 QVD--LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA-LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET 273 (498)
Q Consensus 197 ~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 273 (498)
+.+ .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++...+..+.+.. +.|...|+.....+.+.+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 444 2455555555555432 2233334333333333443 244444444444443 3344444433333222211000
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-------
Q 010881 274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA------- 346 (498)
Q Consensus 274 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 346 (498)
+ ++ .+-...+.++++++.+.+.... .|+ |...|+.+-..+.+.
T Consensus 198 ~---------~~--------~~~~~~~~~~eEle~~~~ai~~--~P~-----------d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 198 S---------GP--------QGRLPENVLLKELELVQNAFFT--DPN-----------DQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHSSSCGGGCC
T ss_pred c---------cc--------ccccchHHHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHhccCccccc
Confidence 0 00 0000014467888888888874 454 678887766666555
Q ss_pred ----CCHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 347 ----GMLEAAKKVVREM-PIEPDNYVLGALLN-----ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 347 ----g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+.++++++.++++ ...|+. .|..+.. +....+..++....+.++++++|....-|..+...+
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578899999888 556753 3332222 222467788999999999999999887777665444
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=1.8e-05 Score=56.89 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY 409 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (498)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4677888899999999999999999987 3334 6778888999999999999999999999999999998888888887
Q ss_pred HhcC
Q 010881 410 ASTE 413 (498)
Q Consensus 410 ~~~g 413 (498)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=1e-05 Score=65.38 Aligned_cols=133 Identities=16% Similarity=-0.013 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY 327 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 327 (498)
++..+...|...|++++|...+++..+ .+ ..++..+...+...|++++|...+++..+.....+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------- 83 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------- 83 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------
Confidence 445555666666666666666665542 11 13667777788888888888888888765310000
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881 328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
.......++..+..++...|++++|...+++. +..+ ...++..+...+...|++++|.+.++++++...
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 00112567888899999999999999998876 1111 245677788889999999999999999887543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=2.5e-05 Score=73.10 Aligned_cols=96 Identities=6% Similarity=-0.030 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C----------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-P----------------IEP-DNYVLGALLNACRVHGDVDLGKETVESLVER 394 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 394 (498)
...+..+...+.+.|++++|...|++. . ..| +..+|..+..+|.+.|++++|++.++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 355777889999999999999999877 3 444 4678888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988764
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.02 E-value=1.3e-05 Score=60.79 Aligned_cols=78 Identities=9% Similarity=0.014 Sum_probs=68.3
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 351 AAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 351 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+|...|++. ...| +...+..+...|...|++++|+..++++++.+|++...+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666666 4455 68888899999999999999999999999999999999999999999999999999999988764
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=2.5e-05 Score=75.45 Aligned_cols=97 Identities=5% Similarity=-0.149 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----------------NYVLGALLNACRVHGDVDLGKETVESLVERS 395 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 395 (498)
...+..+...+.+.|++++|...|++. .+.|+ ...|..+..+|.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 567888999999999999999999988 33332 5788999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
|++..++..++.+|...|++++|+..|++..+..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998754
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=2.9e-05 Score=57.24 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+...+..+...|...|++++|+..|+++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57778888888889999999999999999999998888999999999999999999998887653
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=1.6e-05 Score=73.51 Aligned_cols=97 Identities=9% Similarity=-0.054 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNY------------------VLGALLNACRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 393 (498)
...+..+...+.+.|++++|...|++. ...|+.. .|..+..+|.+.|++++|+..++++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777888999999999999999987 5556543 788899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
.+|++..++..++.+|...|++++|...|++..+..
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999887654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=8.6e-06 Score=64.64 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=73.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV----------DLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
.+.+.+++|...+++. ...| +...|..+..++...+++ ++|+..|+++++++|+...+|..++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567788999999887 4456 788888888888887764 599999999999999999999999999998
Q ss_pred cC-----------CcchHHHHHHhhhhCC
Q 010881 412 TE-----------QWNGVEKVRRGMEDNE 429 (498)
Q Consensus 412 ~g-----------~~~~a~~~~~~m~~~~ 429 (498)
.| ++++|++.|++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998754
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.00013 Score=70.48 Aligned_cols=116 Identities=7% Similarity=-0.022 Sum_probs=89.3
Q ss_pred HHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HH
Q 010881 341 DLLGRAGMLEAAKKVVREM---------PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEG---VH 402 (498)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~ 402 (498)
..+...|++++|+.++++. +-.| -..+++.|...|...|++++|+.+++++++ .+|+++. ++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999998776 2233 256789999999999999999999999986 5677664 47
Q ss_pred HHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHh
Q 010881 403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474 (498)
Q Consensus 403 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 474 (498)
..|+.+|..+|++++|..++++..+.-.. . -...||...++...+......+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-T-----------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-H-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998763221 0 125788888888777766654443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.79 E-value=2.6e-05 Score=61.91 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=76.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH----------HHHHHHHHhC-CCCC-C
Q 010881 297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML----------EAAKKVVREM-PIEP-D 364 (498)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~ 364 (498)
.+.+.+++|...+++..+. .|+ +...|..+..++...+++ ++|+..|++. .+.| +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~-----------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPL-----------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 4556788999999999885 454 689999999999888765 5999999998 6667 6
Q ss_pred HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCch
Q 010881 365 NYVLGALLNACRVHG-----------DVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 365 ~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~ 400 (498)
...|..+..+|...| ++++|++.|+++++++|++..
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 789999999998874 899999999999999999863
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.74 E-value=8.5e-05 Score=56.17 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010881 304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV 381 (498)
Q Consensus 304 ~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 381 (498)
+|+..|++..+. .|+ +...+..+..+|...|++++|...|++. ...| +...|..+..+|...|++
T Consensus 3 ~a~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQ--GTD-----------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHHTT--TCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence 466777777663 344 5889999999999999999999999998 4445 678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 010881 382 DLGKETVESLVERSLDH 398 (498)
Q Consensus 382 ~~A~~~~~~~~~~~~~~ 398 (498)
++|...|+++++..|..
T Consensus 70 ~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 70 AGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999987753
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.73 E-value=0.00017 Score=52.04 Aligned_cols=68 Identities=12% Similarity=-0.058 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 363 PDNYVLGALLNACRVHGD---VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 363 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 477788888888765554 79999999999999999999999999999999999999999999987654
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.72 E-value=0.00034 Score=66.50 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=92.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---
Q 010881 339 LVDLLGRAGMLEAAKKVVREM------PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEG--- 400 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~--- 400 (498)
.+.-+.+.|++++|+.++++. -+.|+ ..+++.+..+|...|++++|+.+++++++ .+|+++.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355667889999999999876 12232 55788999999999999999999999986 4666664
Q ss_pred HHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 010881 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473 (498)
Q Consensus 401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 473 (498)
.+..|+.+|..+|++++|..++++..+.-.. .-...||...+++..|.+....|+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999999998763211 112579999999988888777665
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.00044 Score=54.23 Aligned_cols=114 Identities=6% Similarity=-0.111 Sum_probs=94.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 010881 299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV- 377 (498)
Q Consensus 299 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 377 (498)
.+++++|+.+|++..+.| +.... |...|...+.+++|.+.|++.--.-+...+..|...|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g---------------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN---------------EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHcCC---------------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence 346789999999999876 22333 888888889999999999988212577888888888888
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh----cCCcchHHHHHHhhhhCCcc
Q 010881 378 ---HGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS----TEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 378 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 431 (498)
.+++++|.++|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|..
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 88999999999999987 456789999999999 89999999999999887753
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00013 Score=54.58 Aligned_cols=67 Identities=4% Similarity=-0.166 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 363 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
++...+..+...+...|++++|++.|+++++..|+++..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788889999999999999999999999999999999999999999999999999999987654
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=0.00019 Score=52.37 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=65.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881 339 LVDLLGRAGMLEAAKKVVREM-PIEP-DNY-VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW 415 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (498)
....+...|++++|...+++. ...| +.. .+..+..+|...|++++|++.|+++++.+|++..++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 466788899999999999998 4445 567 88889999999999999999999999999998876632 555
Q ss_pred chHHHHHHhhh
Q 010881 416 NGVEKVRRGME 426 (498)
Q Consensus 416 ~~a~~~~~~m~ 426 (498)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 66777775554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.51 E-value=0.0002 Score=52.55 Aligned_cols=66 Identities=12% Similarity=-0.055 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD 397 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 397 (498)
+...+..+..+|...|++++|...|++. ...| +...|..+..+|...|++++|++.+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 6888999999999999999999999998 4445 5778999999999999999999999999987654
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.00029 Score=50.24 Aligned_cols=65 Identities=17% Similarity=0.092 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35677888889999999999999999999999999999999999999999999999999988764
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.48 E-value=0.00027 Score=67.11 Aligned_cols=104 Identities=9% Similarity=-0.009 Sum_probs=80.4
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HHHHHH
Q 010881 345 RAGMLEAAKKVVREM---------PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEG---VHVLLS 406 (498)
Q Consensus 345 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~l~ 406 (498)
..|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+.+++++++ .+|+++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999988775 22332 56789999999999999999999999986 5677664 477899
Q ss_pred HHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHH
Q 010881 407 NIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLF 466 (498)
Q Consensus 407 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 466 (498)
.+|..+|++++|..++++..+.-.. .-...||...++...|+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 9999999999999999998763221 01256888777766653
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.47 E-value=0.00094 Score=66.07 Aligned_cols=146 Identities=7% Similarity=-0.058 Sum_probs=119.1
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881 270 CIETACSVFDSMPN---RDVFAYTSLISGLANHDQ----------SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY 336 (498)
Q Consensus 270 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~ 336 (498)
..++|.+.++.+.. .+..+|+.--..+...|+ +++++..++++.+. .|+ +..+|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK-----------~y~aW 110 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPK-----------SYGTW 110 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTT-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCC-----------CHHHH
Confidence 34677888888764 355677777777777776 89999999999885 344 68899
Q ss_pred HHHHHHHhhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 337 GCLVDLLGRAG--MLEAAKKVVREM-PIEP-DNYVLGALLNACRVHG-DVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 337 ~~l~~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
..-.-++.+.| +++++++.++++ ...| |..+|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 99888999999 779999999999 4445 7888988888888888 89999999999999999999999998888777
Q ss_pred c--------------CCcchHHHHHHhhhhC
Q 010881 412 T--------------EQWNGVEKVRRGMEDN 428 (498)
Q Consensus 412 ~--------------g~~~~a~~~~~~m~~~ 428 (498)
. ++++++++.+++....
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 4 5678888888777653
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0021 Score=50.27 Aligned_cols=110 Identities=9% Similarity=-0.119 Sum_probs=88.2
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHH
Q 010881 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK----CGCIETA 274 (498)
Q Consensus 199 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 274 (498)
+++++|+..|++..+.| .|+.. +...|...+..++|...|+...+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999988877 34433 5555666677888999998888876 56777888888887 7899999
Q ss_pred HHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 010881 275 CSVFDSMPN-RDVFAYTSLISGLAN----HDQSASAIELFMRMQLEG 316 (498)
Q Consensus 275 ~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 316 (498)
...|++..+ .++..+..|...|.. .++.++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999988765 577788888888888 889999999999998876
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=0.00075 Score=64.03 Aligned_cols=96 Identities=9% Similarity=-0.029 Sum_probs=76.2
Q ss_pred hcCChHHHHHHHHHHHHcC---CCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC
Q 010881 298 NHDQSASAIELFMRMQLEG---VVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM---------PIEPD 364 (498)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~ 364 (498)
..|++++|+.++++.++.. +.|+ .| ...+++.|..+|...|++++|+.++++. +..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS---------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh---------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 3578999999998877631 2232 22 3678999999999999999999999887 33443
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchHH
Q 010881 365 -NYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGVH 402 (498)
Q Consensus 365 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 402 (498)
..+++.|...|...|++++|+.+++++++ .+|+++.+-
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 55789999999999999999999999986 678887543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.39 E-value=0.00097 Score=63.37 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=81.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---------C
Q 010881 293 ISGLANHDQSASAIELFMRMQLEG---VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---------P 360 (498)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~ 360 (498)
+..+.+.|++++|+.++++.++.. +.|+. .....+++.|+.+|...|++++|+.++++. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDIN--------IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccc--------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 455677899999999999988642 22221 114678999999999999999999999876 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchHHH
Q 010881 361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGVHV 403 (498)
Q Consensus 361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 403 (498)
..| -..+++.|...|...|++++|+.+++++++ .+|+++.+-.
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 344 255788999999999999999999999986 6888875543
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.28 E-value=0.0018 Score=50.72 Aligned_cols=105 Identities=14% Similarity=0.023 Sum_probs=79.9
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchHHHHHHHHhHhcCCcchHHHH
Q 010881 349 LEAAKKVVREM--PIEPDNYVLGALLNACRVHG---DVDLGKETVESLVERS-L-DHEGVHVLLSNIYASTEQWNGVEKV 421 (498)
Q Consensus 349 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~ 421 (498)
...+.+.|.+. .-.++..+...+..++.+.+ ++++++.+++...+.+ | ++...++.|+-++.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555544 22468888888999999988 6779999999999988 6 4567888999999999999999999
Q ss_pred HHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCccc
Q 010881 422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479 (498)
Q Consensus 422 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 479 (498)
++.+.+. .|+..+.......+.+++++.|.+-
T Consensus 94 ~~~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 94 VRGLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp HHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 9998763 3344455555556678888887654
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.16 E-value=1.4e-05 Score=74.07 Aligned_cols=239 Identities=10% Similarity=0.005 Sum_probs=103.6
Q ss_pred hHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 010881 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD 100 (498)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 100 (498)
.+|+.|..++... +.+.+|.+.|- ...|+..|..+|.+..+.|.+++-+..+.-.++..-.|. .=+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~--~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQK--GMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTS--SSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred cHHHHHHHHHHcc--CchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 3444444444444 44444444332 223334444555555555555555444443333222222 22344445555
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC------------------------CCChhh
Q 010881 101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV------------------------NRDVIS 156 (498)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~ 156 (498)
.+++.+...++ -.|+..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 54443322211 12333334444445555555555554443321 113444
Q ss_pred HHHHHHHHHccCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010881 157 WTSLINGYAKSGQISIARQMFDK-MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 235 (498)
|-.+-.+|...+.+..|.-.--. +..++ -...++..|-..|.+++-+.+++.-... -......|+-|.-.|++- +
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-C
Confidence 55555555554444332211110 11110 1112334455556666666666655421 234445555555555443 3
Q ss_pred hHHHHHHHHHHH-HhCCCC------ChhHHHHHHHHHHhcCCHHHHHH
Q 010881 236 LDQGRWIHAYVD-RNGIEL------DIILGTAIIDMYAKCGCIETACS 276 (498)
Q Consensus 236 ~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 276 (498)
+++..+.++..- +.+++. ....|..++-.|+.-.+++.|..
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 333333322211 112111 23567777777888888886654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.001 Score=48.37 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881 371 LLNACRVHGDVDLGKETVESLVERSLDHEG-VHVLLSNIYASTEQWNGVEKVRRGMEDNE 429 (498)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 429 (498)
....+...|++++|...++++++..|+++. .+..++.+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999998 99999999999999999999999987654
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.97 E-value=0.02 Score=52.19 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=85.5
Q ss_pred CChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh---cC-----C--
Q 010881 284 RDVFAYTSLISGLA--NHD---QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR---AG-----M-- 348 (498)
Q Consensus 284 ~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-----~-- 348 (498)
.+...|...+++.. ..+ ...+|..+|++..+. .|+ ....|..+..+|.. .+ .
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~-----------~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE-----------FTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 35666666665533 222 346788888888774 444 24455444444321 11 0
Q ss_pred -HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 349 -LEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 349 -~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
...+.+....+ ....++.+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++..
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11222222223 22447888888877777789999999999999999864 4567788899999999999999998877
Q ss_pred hCC
Q 010881 427 DNE 429 (498)
Q Consensus 427 ~~~ 429 (498)
..+
T Consensus 338 rL~ 340 (372)
T 3ly7_A 338 NLR 340 (372)
T ss_dssp HHS
T ss_pred hcC
Confidence 654
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.93 E-value=0.0039 Score=56.86 Aligned_cols=69 Identities=7% Similarity=-0.103 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
.+..+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|++++|.+.|++++.++|..+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 36888988888888889999999999998 5568888888888899999999999999999999999875
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.93 E-value=0.071 Score=55.33 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=95.2
Q ss_pred HHccCCcHHHHH-HHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010881 98 CADTSCLFVGLI-CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM 176 (498)
Q Consensus 98 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 176 (498)
....++++.|.+ ++.. + ++......++..+.+.|..+.|.++.+. . ..-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHH
Confidence 344566666655 3311 1 1022225666777778888888776642 1 1112334567888888888
Q ss_pred HhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh
Q 010881 177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256 (498)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (498)
.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 675 ~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------ 737 (814)
T 3mkq_A 675 LTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------ 737 (814)
T ss_dssp HTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred HHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------
Confidence 87774 557888899999999999999999887743 3344444555666666666555555544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 010881 257 LGTAIIDMYAKCGCIETACSVFDS 280 (498)
Q Consensus 257 ~~~~l~~~~~~~g~~~~A~~~~~~ 280 (498)
-++....+|.+.|++++|.+++.+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCHHHHHHHHHH
Confidence 223444556667888887776544
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.004 Score=54.37 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=73.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHhHhc-CCcch
Q 010881 349 LEAAKKVVREM-PIEPD---NYVLGALLNACRV-----HGDVDLGKETVESLVERSLDH-EGVHVLLSNIYAST-EQWNG 417 (498)
Q Consensus 349 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 417 (498)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|+++++++|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45667777776 55676 6688888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHhhhhCCccccCce
Q 010881 418 VEKVRRGMEDNEVRKVPGC 436 (498)
Q Consensus 418 a~~~~~~m~~~~~~~~~~~ 436 (498)
+.+.+++......+..|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999998777654553
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.029 Score=58.32 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=74.5
Q ss_pred HHccCCHHHHHH-HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010881 164 YAKSGQISIARQ-MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242 (498)
Q Consensus 164 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 242 (498)
....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+.-. .- .......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCCHHHHHHH
Confidence 345677888777 5544431 1223666777777888888776653211 11 2233556788887777
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881 243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313 (498)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (498)
.+. ..+...|..+.+.+.+.++++.|.+.|.++.. |..+...+...|+.+....+.+...
T Consensus 675 ~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 675 LTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 543 24567888888888888888888888776643 3333334444555554444443333
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.78 E-value=0.012 Score=43.19 Aligned_cols=74 Identities=16% Similarity=0.035 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-----P----IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
+..-...|...+...|++..|...|+.. + -.+....+..|..++.+.|+++.|...++++++..|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4556678899999999999999999876 1 123577888999999999999999999999999999998765
Q ss_pred HHH
Q 010881 403 VLL 405 (498)
Q Consensus 403 ~~l 405 (498)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 544
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.71 E-value=0.009 Score=42.79 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 331 PGVQHYGCLVDLLGRAGM---LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 331 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..|+++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 367888888888875555 79999999998 5556 678888888999999999999999999999998844
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.46 E-value=0.015 Score=45.48 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHH
Q 010881 303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG---MLEAAKKVVREM-PIE-P--DNYVLGALLNAC 375 (498)
Q Consensus 303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~ 375 (498)
..+.+-|.+....+ .++..+...+.-++++.+ +++++..+|++. ... | +...+-.+.-+|
T Consensus 15 ~~~~~~y~~e~~~~-------------~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~ 81 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-------------SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 81 (152)
T ss_dssp HHHHHHHHHHHHTT-------------CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-------------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 44555666655543 246788888999999988 677999999988 323 5 356677778889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 376 RVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
.+.|++++|++.++.+++.+|++..+..
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999865433
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.32 E-value=0.088 Score=39.70 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881 367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431 (498)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 431 (498)
.....+..+..+|+-++-.+++..++...+.++.....++.+|.+.|+..+|.+++++.-++|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444455555555555555555544444444455555555555555555555555555555543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.089 Score=42.27 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=66.2
Q ss_pred HHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHH
Q 010881 28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG 107 (498)
Q Consensus 28 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 107 (498)
.....+ |+++.|.++.+.+ .+...|..|.....++|+++-|..+|.+... |..+.-.|...|+.+..
T Consensus 13 ~LAL~l--g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEY--GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHT--TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 444566 8999999988776 4566899999999999999999999988654 45566666667777766
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHh
Q 010881 108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF 146 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 146 (498)
.++-+.....| . ++.....+...|+++++.++|
T Consensus 80 ~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 80 SKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHH
Confidence 65555554443 1 223333344445555555444
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.09 E-value=0.033 Score=41.87 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCchHHHHHHHHhHhcCCcchHHH
Q 010881 348 MLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDL---GKETVESLVERS-L-DHEGVHVLLSNIYASTEQWNGVEK 420 (498)
Q Consensus 348 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~ 420 (498)
.+..+.+-|.+. .-.|+..+-..+..++.+..+... ++.+++.+...+ | ......+.|+-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444443 113677777777778877776555 778888877766 4 344556678888888888888888
Q ss_pred HHHhhhh
Q 010881 421 VRRGMED 427 (498)
Q Consensus 421 ~~~~m~~ 427 (498)
+++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888865
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.97 E-value=0.027 Score=41.24 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881 364 DNYVLGALLNACRVHGDVDLGKETVESLVERS-------LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428 (498)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 428 (498)
+..-...+...+...|++..|..+++.+++.. +....++..|+.++.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678889999999999999999999853 334567889999999999999999999998764
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.44 E-value=0.069 Score=41.22 Aligned_cols=99 Identities=8% Similarity=0.050 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHHhhcCCH------HHHHHHHHhC--CCCCCH-HHHHHHHH------HHHhcCCHHHHHHHHHHHHhcCC
Q 010881 332 GVQHYGCLVDLLGRAGML------EAAKKVVREM--PIEPDN-YVLGALLN------ACRVHGDVDLGKETVESLVERSL 396 (498)
Q Consensus 332 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~~ 396 (498)
|..+|-..+...-+.|+. ++..++|++. .++|+. ..|...+. .+...++.++|.++|+.++....
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 688999999998888998 8888888887 444532 11222111 23445899999999999998755
Q ss_pred CCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV 430 (498)
Q Consensus 397 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 430 (498)
.-...+...+..-.++|+.+.|.+++.+....+.
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5566777888888899999999999988877554
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.38 E-value=0.13 Score=39.73 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=78.9
Q ss_pred CCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH---HHhhcCCHHHHH
Q 010881 283 NRDVFAYTSLISGLANHDQS------ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD---LLGRAGMLEAAK 353 (498)
Q Consensus 283 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~ 353 (498)
..|..+|-..+...-+.|+. ++..++|++.... +.|+. .-.-..|-.|-- .+...++.++|.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k--------~~~wrrYI~LWIrYA~~~ei~D~d~aR 80 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK--------YGQNESFARIQVRFAELKAIQEPDDAR 80 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG--------GTTCHHHHHHHHHHHHHHHHHCGGGCH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc--------cccHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34777888888888777888 8888899988874 44441 001111111111 123458999999
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881 354 KVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL 405 (498)
Q Consensus 354 ~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 405 (498)
++|+.+ .-+- ...|-....--.++|+++.|.+++.+++...|.+.......
T Consensus 81 ~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 81 DYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 999988 2122 77887788888999999999999999999999876544443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.91 Score=36.42 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=22.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282 (498)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 282 (498)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 345555555444332 134455555555555555555555555544
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.14 E-value=0.54 Score=35.99 Aligned_cols=104 Identities=8% Similarity=-0.035 Sum_probs=71.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881 350 EAAKKVVREM-PIEPDNYVLGALLNACRVHGD---VDLGKETVESLVERSLD-HEGVHVLLSNIYASTEQWNGVEKVRRG 424 (498)
Q Consensus 350 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 424 (498)
....+-|.+- +-.|+..+-..+..++.+..+ ..+++.+++.+...+|. .....+.|+-++.+.|++++|.++.+.
T Consensus 23 ~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 23 EILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444333 335777777777778877764 45788888888887775 344566888899999999999999988
Q ss_pred hhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCccc
Q 010881 425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD 479 (498)
Q Consensus 425 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 479 (498)
+.+.. |+.+++.+.-..+.+++.+.|.+-
T Consensus 103 lL~~e--------------------------P~n~QA~~Lk~~Ie~~i~kdGliG 131 (144)
T 1y8m_A 103 LFEHE--------------------------RNNKQVGALKSMVEDKIQKETLKG 131 (144)
T ss_dssp HHHTC--------------------------CCCHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhcC--------------------------CCcHHHHHHHHHHHHHHHHhchhh
Confidence 87643 333444555555578888877654
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.88 E-value=0.43 Score=35.83 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHH
Q 010881 301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA---AKKVVREM-PIE-P--DNYVLGALLN 373 (498)
Q Consensus 301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~ 373 (498)
....+..-|.+....| .|+..+-..+.-++.+..+... ++.++++. ... | .....-.|.-
T Consensus 16 ~l~~~~~~y~~e~~~~-------------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-------------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHS-------------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-------------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3445555565555543 2467788888888988887665 88888887 323 4 3445556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881 374 ACRVHGDVDLGKETVESLVERSLDHEGVHV 403 (498)
Q Consensus 374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 403 (498)
++.+.|++++|.+.++.+++..|++..+..
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 899999999999999999999999875443
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.41 E-value=0.11 Score=45.41 Aligned_cols=113 Identities=8% Similarity=-0.043 Sum_probs=71.4
Q ss_pred CChhHHHHHhhhcCCCCcc--hHHHHHH-HHHhC--CCc------hHHHHHHHHhHHCCCCCC---cchHHHHHHHHHc-
Q 010881 36 GDLSHGYRLFVCLQYRTTF--IWNTMIR-GFAEK--NEP------IKAFALYKQMLRSDFLPN---NYTFSFILRACAD- 100 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~~~~--~~~~li~-~~~~~--~~~------~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~- 100 (498)
++...-...+.+....++. .|..++. .+... |++ ..|...+++..+ +.|+ -..|..+...|..
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 4444445555555544443 3544443 23332 333 566777777776 4465 4467777777777
Q ss_pred ----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-CChhhHHHHhhccC
Q 010881 101 ----TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC-NCMDPARKLFDMSV 150 (498)
Q Consensus 101 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 150 (498)
.|+.++|.+.|++.++..+.-+..++......++.. |+.+++.+.+++..
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 388888888888888887654566666777777774 77888888877654
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.40 E-value=1.2 Score=33.69 Aligned_cols=136 Identities=18% Similarity=0.100 Sum_probs=86.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881 232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLANHDQSASAIELFM 310 (498)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (498)
..|..++..++..+..... +..-+|.++--....-+-+-..++++.+-+ -|. ...|+.......+-
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHH
Confidence 3466666666666665543 334444444433344444444555544332 011 12344444444444
Q ss_pred HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881 311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE-M-PIEPDNYVLGALLNACRVHGDVDLGKETV 388 (498)
Q Consensus 311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (498)
.+-. +.......++.+...|.-++-.+++.. . ..+|++...-.+..+|.+.|+..+|.+++
T Consensus 86 ~~n~-----------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 86 INNT-----------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HTTC-----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hhcc-----------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4322 356677778888899999999999998 4 55678888899999999999999999999
Q ss_pred HHHHhcCCC
Q 010881 389 ESLVERSLD 397 (498)
Q Consensus 389 ~~~~~~~~~ 397 (498)
.++.+.+..
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999887743
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.98 E-value=0.27 Score=37.07 Aligned_cols=66 Identities=6% Similarity=-0.062 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 362 EPDNYVLGALLNACRVHGD---VDLGKETVESLVERSLD-HEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 362 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .......|+-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555555555543 34566666666665553 234455666677777777777777666654
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.86 E-value=5.6 Score=39.37 Aligned_cols=119 Identities=7% Similarity=-0.024 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 010881 300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVH 378 (498)
Q Consensus 300 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 378 (498)
.+.+.|...+........ .+. .-....+..++..+...+...++...+... ...++.....-.+....+.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~--------~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNE--------DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT 298 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCH--------HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCH--------HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHC
Confidence 367888888887765421 110 001122233333344445344555555444 2223333333344444566
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 379 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
|+++.|...|+.+-...+..+...+-++.++...|+.++|..+|+.+.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888888776553334444566677777777888888877777653
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.20 E-value=0.0042 Score=58.01 Aligned_cols=252 Identities=10% Similarity=0.087 Sum_probs=185.1
Q ss_pred CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 115 (498)
++++.|.+.-++...|. .|..|..+....+...+|++.|-+. -|+..|..++.+..+.|.++.-..++....
T Consensus 39 ~~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56788888777766665 4778999999999999998776432 366778999999999999999999888777
Q ss_pred HhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC-------------
Q 010881 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE------------- 182 (498)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------- 182 (498)
+..- ++.+=+.|+-+|++.++..+..+++. .||..-...+..-|...|.++.|.-+|..+..
T Consensus 111 k~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 111 KKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 6543 34455689999999999887766654 35666667777778888888888877776653
Q ss_pred -----------CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881 183 -----------KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI 251 (498)
Q Consensus 183 -----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 251 (498)
.++.||-.+-.+|...+.+.-|.-.--.+. +.|| ....++..|-..|.+++-+.+++.-....
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 378899999999999999987765544443 2222 22345667788899998888887765332
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHHhcCChHHHHH
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN----R-------DVFAYTSLISGLANHDQSASAIE 307 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~a~~ 307 (498)
......|+.|.-.|++- +.++..+.++.... | ....|.-++-.|.+-.+++.|..
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 45678888888888875 44555544443322 2 45678888888888888887653
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.95 Score=45.76 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
..-|...|+++.|+.+.++++..-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456788999999999999999999999999999999999999999999999985
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.49 E-value=0.45 Score=37.55 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC---
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREM----PIEPD-------NYVLGALLNACRVHGDVDLGKETVESLVERS---LDH--- 398 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~--- 398 (498)
+..-+..+...|.++.|+-+.+.+ +..|+ ..++..+..++...+++.+|...|++++... +..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344477788899999998887765 22344 2356677889999999999999999986521 111
Q ss_pred -------------------chHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 399 -------------------EGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 399 -------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
...-+.++.+|.+.+++++|+.+++.+..
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 13556789999999999999999987643
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.38 E-value=9.8 Score=35.97 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCc---
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREM-----PIEPD---NYVLGALLNACRVHGDVDLGKETVESLVE---RSLDHE--- 399 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~--- 399 (498)
.....|...+...|++.+|..++.++ +..+. ...+..-++.|...+++.+|..+++++.. ..+.++
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34466889999999999999999987 22221 34566677889999999999999999753 223333
Q ss_pred -hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 400 -GVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 400 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
..+...+..+...++|.+|.+.|....+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3456788888999999999988777643
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.16 E-value=7.7 Score=41.87 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=108.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------------------------ChhHHHHHHHHHHhcCChHHH
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--------------------------DVFAYTSLISGLANHDQSASA 305 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~a 305 (498)
+.+....-.+..+|..+|++++|...|++.... -..-|..++..+-+.+.++.+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 344444455677889999999999999887420 012477788888999999999
Q ss_pred HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 010881 306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLG 384 (498)
Q Consensus 306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A 384 (498)
.++-....+.. .++. .......|..+...+...|++++|...+-.+ ...--...+..|+..++..|..+.-
T Consensus 919 i~fa~lAi~~~-~~~~-------~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 919 LEFSLLADASK-ETDD-------EDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHC-CSCC-------HHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhc-cCCC-------hhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhh
Confidence 98888777642 1220 0001236888999999999999999999877 2223466788888877777765444
Q ss_pred HH--------HHHHHH-----hc-CCCC-chHHHHHHHHhHhcCCcchHHHH-HHhhh
Q 010881 385 KE--------TVESLV-----ER-SLDH-EGVHVLLSNIYASTEQWNGVEKV-RRGME 426 (498)
Q Consensus 385 ~~--------~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~-~~~m~ 426 (498)
.. .++.++ .. .+.+ +..|..|=..+...|++..|..+ |+...
T Consensus 991 ~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 991 LNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 22 222222 22 3333 33445555556677888877664 55443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.11 E-value=0.56 Score=43.65 Aligned_cols=68 Identities=15% Similarity=0.045 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh-----CCccccCc
Q 010881 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED-----NEVRKVPG 435 (498)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 435 (498)
...++.++...|++++|...+..++..+|-+...+..++.+|.+.|+..+|++.|++..+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667777888888888888888888888888888888888888888888888887753 36665543
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.68 E-value=0.77 Score=46.42 Aligned_cols=122 Identities=12% Similarity=0.046 Sum_probs=76.9
Q ss_pred HHHHHHHhCCC-chHHHHHHHHhHHCCCCCCcchHH--HHHHHHHccCC-cHHHHHHHHHHHHh------CCCC-c----
Q 010881 58 TMIRGFAEKNE-PIKAFALYKQMLRSDFLPNNYTFS--FILRACADTSC-LFVGLICHAQVIRL------GWES-Y---- 122 (498)
Q Consensus 58 ~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~-~~~a~~~~~~~~~~------~~~~-~---- 122 (498)
.++..+...++ .+.|+.+|+++.+.. |...++. .++..+...++ --+|.+++.+.++. ...+ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444556 478999999998743 5444332 23333333322 22344444444321 1111 1
Q ss_pred ------hhHHHHHHHHHHhCCChhhHHHHhhccC---CCChhhHHHHHHHHHccCCHHHHHHHHhhCC
Q 010881 123 ------DFVLNGLLHLYATCNCMDPARKLFDMSV---NRDVISWTSLINGYAKSGQISIARQMFDKMP 181 (498)
Q Consensus 123 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 181 (498)
......-...+...|+++.|+++-++.+ ..+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1123333456778899999999998865 3467899999999999999999999999886
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.78 E-value=11 Score=33.82 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=12.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHH
Q 010881 153 DVISWTSLINGYAKSGQISIARQMF 177 (498)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~ 177 (498)
|+.....+...|.+.+++.+|+.-|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3444444445555555555555554
No 247
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.57 E-value=7.8 Score=31.93 Aligned_cols=124 Identities=7% Similarity=-0.046 Sum_probs=48.1
Q ss_pred hhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 010881 38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117 (498)
Q Consensus 38 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 117 (498)
.+....+.+.+..++...-...+..+.+.++.+ +...+.++.. .+|...-...+.++...++.+.... +..++
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l-- 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEP-LIKAL-- 90 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHH-HHHHT--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHH-HHHHH--
Confidence 333334444444444444444455555544422 2233333322 1343333344444444444322221 11111
Q ss_pred CCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCC
Q 010881 118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169 (498)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (498)
-.++..+....+.++.+.++.+....+.+.+..++...-...+.++.+.++
T Consensus 91 -~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 91 -KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp -TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred -cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 123444444444444444443333333333333344333333444443333
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.43 E-value=14 Score=34.80 Aligned_cols=26 Identities=4% Similarity=0.178 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
....++..|...|+++...+.+.-+.
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34555666666666666655554443
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.98 E-value=10 Score=35.02 Aligned_cols=157 Identities=8% Similarity=0.006 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881 256 ILGTAIIDMYAKCGCIETACSVFDSMPN--------RDVFAYTSLISGLANHD-QSASAIELFMRMQLEGVVPNESMSEI 326 (498)
Q Consensus 256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ 326 (498)
.....|...|.+.|+.++..+++..... +.......++..+.... ..+.-.++..+..+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--------- 90 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--------- 90 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH---------
Confidence 4556788888899999888888887764 23445667777776643 33334444444433100
Q ss_pred hCCCCChHHH------HHHHHHHhhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881 327 YGIEPGVQHY------GCLVDLLGRAGMLEAAKKVVREM-----PIEPD---NYVLGALLNACRVHGDVDLGKETVESLV 392 (498)
Q Consensus 327 ~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 392 (498)
-...+| ..++..|...|++.+|..++.++ ..... ...+..-+..|...+++.++...+..+.
T Consensus 91 ----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 91 ----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp ----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 012333 26889999999999999998887 22211 2344555667899999999999999987
Q ss_pred hcC---CCCchH----HHHHHHHhH-hcCCcchHHHHHHhh
Q 010881 393 ERS---LDHEGV----HVLLSNIYA-STEQWNGVEKVRRGM 425 (498)
Q Consensus 393 ~~~---~~~~~~----~~~l~~~~~-~~g~~~~a~~~~~~m 425 (498)
... +.+|.. ...-+..+. ..++|.+|...|-+.
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 632 233322 223445566 789999998877554
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.59 E-value=20 Score=37.23 Aligned_cols=218 Identities=7% Similarity=-0.035 Sum_probs=93.8
Q ss_pred HHHHHHHHccCCcH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC----Chh--hHHHHHHHH
Q 010881 92 SFILRACADTSCLF-VGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR----DVI--SWTSLINGY 164 (498)
Q Consensus 92 ~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~li~~~ 164 (498)
.++.+++...|--. .........+... .+....-....-+....|+.+++..+++..... +.. .-..+.-+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence 35566777776432 2122222222221 222222223333456678888888888776541 222 222333444
Q ss_pred HccCCHHHHHHHHhhCCC-CC----------hhHHHHHHHHHHhCCC-HhHHHHHHHHHHHcCCCCCHHHHH--HHHHHH
Q 010881 165 AKSGQISIARQMFDKMPE-KN----------AVSWSAMINGYVQVDL-FKEALEHFNYMQLCGFRPNHAGIV--GALTAC 230 (498)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~-~~----------~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~ 230 (498)
...|.-+++...+..... ++ ...-..+.-+++-.|. -+++...+..+....- +...... .+...+
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~ 500 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCM 500 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence 555554455555544321 11 1111222222322232 1345555555544211 1111111 222233
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCCHHHHHHHHhhCCC-CChh-HHH---HHHHHHHhcCChH
Q 010881 231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM--YAKCGCIETACSVFDSMPN-RDVF-AYT---SLISGLANHDQSA 303 (498)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~~~~~ 303 (498)
.-.|+.+....++..+.+.. +..+...+.-+ +...|+.+.+..+++.+.. .+.. -|. ++.-+|+..|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 45566666666666555421 22333323332 3345665555555554432 2222 222 2333455666665
Q ss_pred HHHHHHHHHHH
Q 010881 304 SAIELFMRMQL 314 (498)
Q Consensus 304 ~a~~~~~~m~~ 314 (498)
....++..+..
T Consensus 578 aIq~LL~~~~~ 588 (963)
T 4ady_A 578 AVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 55556666554
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.49 E-value=4 Score=31.24 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881 330 EPGVQHYGCLVDLLGRAGM---LEAAKKVVREM-PIEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV 401 (498)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 401 (498)
.|+..+-..+.-++.+..+ ..+++.+++++ ...| .....-.|.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3567777777888887765 45677888877 2234 34455566778999999999999999999999998643
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.02 E-value=14 Score=32.82 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=12.5
Q ss_pred chhHHHHHHHHHHhCCChhhHHHHh
Q 010881 122 YDFVLNGLLHLYATCNCMDPARKLF 146 (498)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~a~~~~ 146 (498)
++..+..+...|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4444555555555555555555444
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.95 E-value=4.5 Score=43.64 Aligned_cols=125 Identities=8% Similarity=-0.074 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC---
Q 010881 289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEP--- 363 (498)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p--- 363 (498)
...++..+...+.++-+.++..-.. .+...--.+..+|...|++++|.+.|++. ++..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----------------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~ 877 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----------------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS 877 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----------------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch
Confidence 3345666777777776665443221 13444456778899999999999999988 2211
Q ss_pred --------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCch----HHHHHHHHhHhcCCcchH
Q 010881 364 --------------------DNYVLGALLNACRVHGDVDLGKETVESLVERSL-DHEG----VHVLLSNIYASTEQWNGV 418 (498)
Q Consensus 364 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~a 418 (498)
-..-|..++..+.+.+.++.+.++...+++..+ +++. .|..+...+...|++++|
T Consensus 878 l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 878 QFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp SCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 123467778888899999999999999988654 3332 466788889999999999
Q ss_pred HHHHHhhhhCCc
Q 010881 419 EKVRRGMEDNEV 430 (498)
Q Consensus 419 ~~~~~~m~~~~~ 430 (498)
...+-.+.+...
T Consensus 958 y~aL~~~pd~~~ 969 (1139)
T 4fhn_B 958 HVALMVLSTTPL 969 (1139)
T ss_dssp GHHHHHHHHSSS
T ss_pred HHHHHhCCCHHH
Confidence 988877665443
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.48 E-value=2.9 Score=31.52 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881 330 EPGVQHYGCLVDLLGRAGM---LEAAKKVVREM-PIEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH 402 (498)
Q Consensus 330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 402 (498)
.|+..+-..+.-++.+..+ ..+++.+++++ ...| ....+-.|.-++.+.|++++|.+..+.+++..|++..+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3566777777777777665 45678888777 2234 355666777899999999999999999999999987543
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.44 E-value=6.1 Score=28.07 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=50.0
Q ss_pred HHHHhhcC-CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 340 VDLLGRAG-MLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 340 ~~~~~~~g-~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
...+-+.. |.=+..+-++.+ .+.|++....+.+.+|.+.+++..|.++++-+...-.+....|..++
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 33344444 555666666665 78899999999999999999999999999998876544444566553
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.44 E-value=4.6 Score=33.01 Aligned_cols=80 Identities=8% Similarity=0.051 Sum_probs=54.5
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881 351 AAKKVVREM-PIEPDNYVLGALLNACRV--HGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGM 425 (498)
Q Consensus 351 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 425 (498)
.+...|... ..+-|+......+..-.. .++..++.++|..+...+ -..+..|...+..+...|++.+|.++|+.-
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444 445566655554443222 455778999999988755 445667888999999999999999999777
Q ss_pred hhCCc
Q 010881 426 EDNEV 430 (498)
Q Consensus 426 ~~~~~ 430 (498)
.+.+-
T Consensus 142 I~~~A 146 (202)
T 3esl_A 142 AENNC 146 (202)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 66554
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.29 E-value=15 Score=32.53 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=71.9
Q ss_pred HHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH----FNYMQLCGFRPNHAGIVGALTACAFLG 234 (498)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~ 234 (498)
++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+...+.+++++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 444445555566666555332 12234455655544443 444455667777777776666654432
Q ss_pred --Ch---HHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 010881 235 --AL---DQGRWIHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299 (498)
Q Consensus 235 --~~---~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 299 (498)
.. .-..+....-.+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++--+...
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 11 122222333333332 236678888999999999999999987633323555565555544444
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.98 E-value=9 Score=30.20 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCCc-------chHHHHHHHHHccCCcHHHHHHHHHHHH
Q 010881 55 IWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNN-------YTFSFILRACADTSCLFVGLICHAQVIR 116 (498)
Q Consensus 55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 116 (498)
.+-.-+..+...+.++.|+-+.+.+... +..|+. .++..+..++...|++.+|...|++.++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3334445555556666665555554332 122222 1334455556666666666666666543
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.08 E-value=2.9 Score=38.79 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CC
Q 010881 290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--------PI 361 (498)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~ 361 (498)
..++..+...|++.+|...+..+... .| -+...|..+|.++.+.|+..+|++.|++. |+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P-----------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HP-----------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--ST-----------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34566777888888888888888764 22 25678899999999999999999888765 77
Q ss_pred CCCHHH
Q 010881 362 EPDNYV 367 (498)
Q Consensus 362 ~p~~~~ 367 (498)
.|+..+
T Consensus 242 ~P~~~l 247 (388)
T 2ff4_A 242 DPGPTL 247 (388)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 787654
No 260
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.76 E-value=13 Score=30.23 Aligned_cols=181 Identities=5% Similarity=-0.046 Sum_probs=97.1
Q ss_pred HHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 010881 41 GYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120 (498)
Q Consensus 41 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 120 (498)
-..+++.+..+|...-...+.++.+.++.+.. ..+.++.. .++...-...+.++...++.+....+. .++. .
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d 87 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---D 87 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---C
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---C
Confidence 33344444445555445555555555543332 33333332 234444444555555555543332222 2222 3
Q ss_pred CchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCC
Q 010881 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL 200 (498)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 200 (498)
++..+....+.++.+.++.+....+.+.+..++...-...+.++.+.++.+....+...+..++...-...+.++.+.|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 56666666677777777665555555555566666666667777777765544445555556666666666777777765
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233 (498)
Q Consensus 201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 233 (498)
.++...+..+.+. ++...-...+.++.+.
T Consensus 168 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 -ERVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 4566666666653 4444444455554443
No 261
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.53 E-value=14 Score=30.35 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881 252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL 314 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (498)
.++..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.+. .++...+..+..
T Consensus 123 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 34555555555666655554433334444445565555555666666554 445555555544
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.49 E-value=7.9 Score=27.50 Aligned_cols=63 Identities=19% Similarity=0.090 Sum_probs=35.1
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 200 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
+.-+..+-++.+....+.|+.......+.+|.+.+++..|.++++-++..- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 334455555555555566666666666666666666666666666555442 222344554443
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.48 E-value=37 Score=35.26 Aligned_cols=220 Identities=10% Similarity=-0.044 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCChhhH-HHHh-hccCC-CCh-hhHHHHHHHHHccCCHHHHHHHHhhCCCC----Chh--HHHHHHHHH
Q 010881 126 LNGLLHLYATCNCMDPA-RKLF-DMSVN-RDV-ISWTSLINGYAKSGQISIARQMFDKMPEK----NAV--SWSAMINGY 195 (498)
Q Consensus 126 ~~~l~~~~~~~g~~~~a-~~~~-~~~~~-~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~li~~~ 195 (498)
-.++.+++..+|--.+. .+.. +++.+ .+- ..-...--+....|+.+++...++..... +.. .=..+.-+.
T Consensus 342 A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 342 AVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence 34567778877754333 2211 11211 121 12223334567789999999999987751 222 222333445
Q ss_pred HhCCCHhHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCCh--hHHHHHHHHH
Q 010881 196 VQVDLFKEALEHFNYMQLCGF-------RPNHAGIVGALTACAFLGA-LDQGRWIHAYVDRNGIELDI--ILGTAIIDMY 265 (498)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 265 (498)
...|..+++..++...+...- .+....-..+.-+.+..|. -+++...+..+.... .+.. ...-++...+
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~ 500 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCM 500 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhh
Confidence 566666678887777665321 1112222233333333442 345555555555432 1111 1222344445
Q ss_pred HhcCCHHHHHHHHhhCCC-CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH--HHHH
Q 010881 266 AKCGCIETACSVFDSMPN-RD--VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY--GCLV 340 (498)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~--~~l~ 340 (498)
+-.|+-+....++..+.+ .+ +.-.-.+.-++...|+.+.+..+.+.+.... .|....- ..+.
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-------------dp~vRygaa~alg 567 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-------------ESLLRYGGAFTIA 567 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-------------CHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-------------CHHHHHHHHHHHH
Confidence 567787777777665443 22 2223333445567899998888888887631 1212221 2345
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 010881 341 DLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~ 359 (498)
-+|+..|+.....+++..+
T Consensus 568 lAyaGTGn~~aIq~LL~~~ 586 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVA 586 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHh
Confidence 5677778877666677766
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.56 E-value=8.6 Score=27.14 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=36.9
Q ss_pred HHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI 223 (498)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 223 (498)
.+...|++++|..+.+...-||...|-.|. -.+.|.-+++..-+.++...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 455667777777777777777777776553 346677777777666666554 3443333
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.04 E-value=9.2 Score=27.05 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=29.0
Q ss_pred HHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881 163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215 (498)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 215 (498)
.+...|++++|..+.+...-||...|-.|.. .+.|.-+++..-+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445566666666666666666666655432 35555566655555555443
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.75 E-value=9.2 Score=29.68 Aligned_cols=79 Identities=10% Similarity=-0.006 Sum_probs=53.7
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 350 EAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 350 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
+.+...|..- ..+-|+......+..-... +++.++|..+...+ -..+..|...+..+...|++++|.++|+.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555544 4555666555555433333 34888898888755 4456668889999999999999999997777
Q ss_pred hCCcc
Q 010881 427 DNEVR 431 (498)
Q Consensus 427 ~~~~~ 431 (498)
+.+-+
T Consensus 129 ~~~A~ 133 (152)
T 4a1g_A 129 QNQAE 133 (152)
T ss_dssp HTTCB
T ss_pred HcCCc
Confidence 66543
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.61 E-value=15 Score=27.72 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881 348 MLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS 406 (498)
Q Consensus 348 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 406 (498)
|.=+..+-++.+ .+-|++......+.+|.+.+|+..|.++++-+...-.+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 444555555555 78899999999999999999999999999998875544444566553
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.89 E-value=20 Score=30.88 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=37.2
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881 229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP 282 (498)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 282 (498)
...+.|++++++.....-++.. +.|...-..|++.+|-.|+++.|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445667777777666666654 6677777778888888888888877766554
No 269
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.88 E-value=21 Score=28.94 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCC
Q 010881 122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ 169 (498)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (498)
+..+....+.++...++.+....+.+.+..++...-...+.++.+.++
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333344444444443333333333333343333334444444443
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.89 E-value=17 Score=27.39 Aligned_cols=62 Identities=19% Similarity=0.113 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881 201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID 263 (498)
Q Consensus 201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (498)
.-+..+-++.+....+.|+.......+.+|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455555555566667777777777777777777777777776665543 333445555543
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.07 E-value=13 Score=29.21 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=50.7
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 351 AAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 351 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.+...|..- ..+-|+......+..--.. +.+.++|..|...+ -..+..|...+..+...|++.+|.++|+.-.+
T Consensus 48 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 48 RAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444333 4455666555555433233 34677888887755 44566678888888999999999999977777
Q ss_pred CCcc
Q 010881 428 NEVR 431 (498)
Q Consensus 428 ~~~~ 431 (498)
.+-+
T Consensus 125 ~~A~ 128 (164)
T 2wvi_A 125 QKAE 128 (164)
T ss_dssp TTCB
T ss_pred cCCC
Confidence 6543
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.33 E-value=6.2 Score=37.16 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchH----
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREM-----PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGV---- 401 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~---- 401 (498)
..+...+...|.+.|++++|.+.+.++ +..--...+...+..+...+++..+...++++.... ..++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346677999999999999999999998 333456778888999999999999999999987642 222222
Q ss_pred HHHHHHHhHhcCCcchHHHHHHhhh
Q 010881 402 HVLLSNIYASTEQWNGVEKVRRGME 426 (498)
Q Consensus 402 ~~~l~~~~~~~g~~~~a~~~~~~m~ 426 (498)
...-+.++...++|.+|.+.|-...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 2234455667899999998876654
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.43 E-value=19 Score=25.49 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313 (498)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (498)
...++|..+-+.+...+. ...+-..=+..+...|++++|..+.+...-||...|.+|-. .+.|..+++...+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777776653 33333333455678999999999999999999999988754 46677888888887776
Q ss_pred HcC
Q 010881 314 LEG 316 (498)
Q Consensus 314 ~~~ 316 (498)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 665
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.86 E-value=22 Score=30.43 Aligned_cols=114 Identities=10% Similarity=-0.028 Sum_probs=51.5
Q ss_pred HHHHHhhcCCCCChhHHHHHhhhcCCCCcc----hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc---hHHHHHHH
Q 010881 25 KIIGFCSASDIGDLSHGYRLFVCLQYRTTF----IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY---TFSFILRA 97 (498)
Q Consensus 25 ~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~ 97 (498)
..+...++. |+++....+++.-...+.. -+ +.+...+..|+.+ +++.+.+.|..|+.. ..+ .+..
T Consensus 7 ~~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGAT-PFLL 78 (285)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHH
T ss_pred hHHHHHHHc--CCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCC-HHHH
Confidence 344455566 7888888777764433221 12 2344444556644 344444555544322 122 2223
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhhHHHHhhccC
Q 010881 98 CADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCMDPARKLFDMSV 150 (498)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (498)
.+..|+.+ +++.+++.|..++... ..+.+...+..|+.+-+..+++...
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 33445543 3344444554433211 1122333344555555555555433
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.31 E-value=20 Score=25.31 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881 234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ 313 (498)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (498)
...++|..+-+.+...+. ...+-..=+..+...|++++|..+.+...-||...|.+|-. .+.|..+++...+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777776653 33333333455678999999999999999999999987754 56788888888887887
Q ss_pred HcC
Q 010881 314 LEG 316 (498)
Q Consensus 314 ~~~ 316 (498)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 765
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.36 E-value=7 Score=33.63 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881 340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400 (498)
Q Consensus 340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 400 (498)
+..+.+.|++++|++....- .-.| |...-..|+..+|-.|++++|..-++...+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 34567889999999887766 4455 7777777889999999999999999999999998543
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.57 E-value=78 Score=31.26 Aligned_cols=215 Identities=10% Similarity=-0.124 Sum_probs=115.2
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHH----HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010881 199 DLFKEALEHFNYMQLCGFRPNHAGIVGALT----ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETA 274 (498)
Q Consensus 199 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 274 (498)
.+.+.|...+....+.. ..+......+-. .....+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37888998888886543 223333222222 223334245555555554433 23444444444555677999999
Q ss_pred HHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHc------------CCCCCchhhhhhCCCC-Ch-----
Q 010881 275 CSVFDSMPNRD---VFAYTSLISGLANHDQSASAIELFMRMQLE------------GVVPNESMSEIYGIEP-GV----- 333 (498)
Q Consensus 275 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~p~~~~~~~~~~~~-~~----- 333 (498)
...|+.|.... ....--+..++...|+.++|..+|..+... |..+..... .+.+ ..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~---~~~~~~~~~~~~ 381 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID---KAPQNVDSALTQ 381 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC---CCCSCCCCHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC---CCChhHHhhhcc
Confidence 99999987632 222334556777889999999988887542 111110000 0011 00
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCchHHHHHHHHhH
Q 010881 334 QHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL---DHEGVHVLLSNIYA 410 (498)
Q Consensus 334 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~ 410 (498)
..-..-+..+...|....|...+..+.-..+......+.......|..+.++.........+. ..+..|...+.-..
T Consensus 382 ~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a 461 (618)
T 1qsa_A 382 GPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYT 461 (618)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHH
T ss_pred ChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHH
Confidence 011223556778899999988887761123444444455555677777777665543322110 01223445555555
Q ss_pred hcCCcchHH
Q 010881 411 STEQWNGVE 419 (498)
Q Consensus 411 ~~g~~~~a~ 419 (498)
+.-.++..+
T Consensus 462 ~~~gv~~~l 470 (618)
T 1qsa_A 462 SGKEIPQSY 470 (618)
T ss_dssp TTSSSCHHH
T ss_pred HHcCCCHHH
Confidence 555555443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.36 E-value=29 Score=29.71 Aligned_cols=208 Identities=9% Similarity=-0.020 Sum_probs=98.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc---hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHH
Q 010881 58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY---TFSFILRACADTSCLFVGLICHAQVIRLGWESYDF--VLNGLLHL 132 (498)
Q Consensus 58 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 132 (498)
..+...++.|+.+....+ .+.|..++.. .-.+.+...+..|+.+ +++.+++.|..++.. ...+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 344455666776544433 3444433322 1112344445556654 334445555544321 11123344
Q ss_pred HHhCCChhhHHHHhhccCCCC---hhhHHHHHHHHHccCCHHHHHHHHhhCCCCChh------------HHHHHHHHHHh
Q 010881 133 YATCNCMDPARKLFDMSVNRD---VISWTSLINGYAKSGQISIARQMFDKMPEKNAV------------SWSAMINGYVQ 197 (498)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~ 197 (498)
.+..|+.+-+..+++....++ ...++. +...+..|+.+-...+++.-..++.. .-.+.+...+.
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 455677777777776654332 222222 33344567777666666654432211 00122334445
Q ss_pred CCCHhHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCH
Q 010881 198 VDLFKEALEHFNYMQLC-GFRPNH---AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL--GTAIIDMYAKCGCI 271 (498)
Q Consensus 198 ~g~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 271 (498)
.|+.+-+..+ .+. |..++. ...+.+ ...+..+.......+.+.+.+.|..++... -.+.+...++.|+.
T Consensus 158 ~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 158 KGHVEVLKIL----LDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HTCHHHHHHH----HHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred cCCHHHHHHH----HHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 5665544333 333 433322 112222 223344554445566666777776554321 12334455677888
Q ss_pred HHHHHHHh
Q 010881 272 ETACSVFD 279 (498)
Q Consensus 272 ~~A~~~~~ 279 (498)
+-+..+++
T Consensus 233 ~~v~~Ll~ 240 (285)
T 1wdy_A 233 GLVQRLLE 240 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887777
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.67 E-value=19 Score=29.34 Aligned_cols=61 Identities=8% Similarity=0.166 Sum_probs=40.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881 101 TSCLFVGLICHAQVIRLGWESY-DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI 161 (498)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 161 (498)
.+.......+|..|...|+... ...|......+...|++.+|.++|+.+++........|.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3446688888888888876543 445667777777777777777777766554444443333
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.37 E-value=16 Score=30.37 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=50.4
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 351 AAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 351 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
.+...|... ..+-|.......+..- .. .+.+..+|..+...+ -.....|...+..+...|++.+|.++|+.-.+
T Consensus 102 rc~~~F~~~~rYknD~RyLklWl~Ya-~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 102 RCTREFVRNPLYKDDVRYLRIWMQYV-NY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHH-TT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHH-Hc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444433 4455666555555432 21 357778888888755 44566688899999999999999999977666
Q ss_pred CCc
Q 010881 428 NEV 430 (498)
Q Consensus 428 ~~~ 430 (498)
.+-
T Consensus 179 ~~A 181 (223)
T 4aez_C 179 MKA 181 (223)
T ss_dssp HTC
T ss_pred cCC
Confidence 543
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.76 E-value=30 Score=26.82 Aligned_cols=56 Identities=5% Similarity=-0.075 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHH
Q 010881 107 GLICHAQVIRLGWES-YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN 162 (498)
Q Consensus 107 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 162 (498)
...+|..|...|+.. -...|......+-..|++.+|.++|+.+++........|..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 667777777666543 33456666666677777777777776665554444444433
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.41 E-value=32 Score=28.45 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=9.0
Q ss_pred CChhHHHHHhhhc
Q 010881 36 GDLSHGYRLFVCL 48 (498)
Q Consensus 36 g~~~~A~~~~~~~ 48 (498)
|+++....+++.-
T Consensus 20 g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 20 GIYERCRELVEAG 32 (240)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CChHHHHHHHHcC
Confidence 7777777777653
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.29 E-value=97 Score=30.81 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh--hHHHHHHHH-HHhcC--------------Ch-HHHHHHHHHHHHcCCCCCchhh
Q 010881 263 DMYAKCGCIETACSVFDSMPNRDV--FAYTSLISG-LANHD--------------QS-ASAIELFMRMQLEGVVPNESMS 324 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~~--------------~~-~~a~~~~~~m~~~~~~p~~~~~ 324 (498)
.-+...|++++|..+|....+.|. ...|.++.- ..... ++ ..|..+.+.....+ +.
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~------~~ 524 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNA------GI 524 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCH------HH
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCc------hh
Confidence 345578899999998888776443 344544442 22211 11 12333333322110 00
Q ss_pred hhhCCCC-ChHHHHHHHHH-----HhhcCCHHHHHHHHHhCCCCCC
Q 010881 325 EIYGIEP-GVQHYGCLVDL-----LGRAGMLEAAKKVVREMPIEPD 364 (498)
Q Consensus 325 ~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~p~ 364 (498)
...+.+ +..|+..|.+. +...|+++.|++.++++++-|.
T Consensus 525 -~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 525 -SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp -HTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred -hhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 001111 45566665443 3678999999999999966663
No 284
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=58.03 E-value=17 Score=30.92 Aligned_cols=52 Identities=10% Similarity=-0.087 Sum_probs=25.6
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCCCcc-------hHHHHHHHHH--ccCCcHHHHHHHHHH
Q 010881 63 FAEKNEPIKAFALYKQMLRSDFLPNNY-------TFSFILRACA--DTSCLFVGLICHAQV 114 (498)
Q Consensus 63 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~g~~~~a~~~~~~~ 114 (498)
.++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 345566666666666555554444422 2233333322 456666555555543
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.01 E-value=33 Score=28.92 Aligned_cols=85 Identities=8% Similarity=-0.085 Sum_probs=48.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHC--CCCC----CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 010881 59 MIRGFAEKNEPIKAFALYKQMLRS--DFLP----NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL 132 (498)
Q Consensus 59 li~~~~~~~~~~~A~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (498)
-++.+....++++|++++++..+. ++++ +.......+..-...+.-..+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467888899999999999887542 3332 1122233333333333333344444444 22 3344555556677
Q ss_pred HHhCCChhhHHHHh
Q 010881 133 YATCNCMDPARKLF 146 (498)
Q Consensus 133 ~~~~g~~~~a~~~~ 146 (498)
+.+.|+.++|.++|
T Consensus 101 L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 101 MIKLGLPEQALDLF 114 (235)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCChhHHHHHH
Confidence 77778877777776
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.46 E-value=35 Score=31.96 Aligned_cols=96 Identities=11% Similarity=-0.109 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHh---CCCCchhHH-
Q 010881 53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL--PNNYTFSFILRACADTSCLFVGLICHAQVIRL---GWESYDFVL- 126 (498)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~- 126 (498)
..++..+...|.+.|+++.|.+.|.+++..-.. --...+..+++.+...+++..+...+.++... +..++....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346778889999999999999999999874322 23456778888899999999999998887653 223332211
Q ss_pred -HHHHHHHHhCCChhhHHHHhhc
Q 010881 127 -NGLLHLYATCNCMDPARKLFDM 148 (498)
Q Consensus 127 -~~l~~~~~~~g~~~~a~~~~~~ 148 (498)
..-.-.+...+++..|.+.|-+
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHH
Confidence 1111223456888888777754
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.34 E-value=1.3e+02 Score=28.82 Aligned_cols=59 Identities=12% Similarity=-0.152 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh----h--HH-HHHHHHHHhcCCHHHHHHHHhhCC
Q 010881 221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI----I--LG-TAIIDMYAKCGCIETACSVFDSMP 282 (498)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~--~~-~~l~~~~~~~g~~~~A~~~~~~~~ 282 (498)
..++.++..|...+.+++|..+..... ++.+. . .| -.+...+.-.+++.+|.+.|....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456666666777777777777766553 22111 1 11 123344455666777766666543
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.85 E-value=67 Score=26.35 Aligned_cols=104 Identities=9% Similarity=-0.038 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCChh--HHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcc----hHHHHHHHHHhCCCchHHHHHHHHh
Q 010881 6 QIQSHLTVSGTLWDPF--AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTF----IWNTMIRGFAEKNEPIKAFALYKQM 79 (498)
Q Consensus 6 ~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m 79 (498)
++...+++.|..++.. .-.+.+...++. |+.+-+..+++.-...+.. -++. +...+..|+.+ +++.+
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~----~v~~L 95 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAIN--NRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLS----MVVQL 95 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHH----HHHHH
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHh--CCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHH----HHHHH
Confidence 4566777777665442 122345556666 8888888887765433211 1223 33334445543 34444
Q ss_pred HHCCCCCCcc---hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC
Q 010881 80 LRSDFLPNNY---TFSFILRACADTSCLFVGLICHAQVIRLGWES 121 (498)
Q Consensus 80 ~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 121 (498)
.+.|..|+.. ..+ .+...+..|+.+ +++.+++.|..+
T Consensus 96 l~~g~~~~~~~~~g~t-~l~~A~~~~~~~----~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 96 MKYGADPSLIDGEGCS-CIHLAAQFGHTS----IVAYLIAKGQDV 135 (240)
T ss_dssp HHTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHcCCCCcccCCCCCC-HHHHHHHcCHHH----HHHHHHhcCCCc
Confidence 4555544432 222 233334445544 334444455443
No 289
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=54.59 E-value=34 Score=24.07 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=29.2
Q ss_pred CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHH
Q 010881 36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF 73 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 73 (498)
.+.+.|+++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35788888888888888888888888887666655553
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.39 E-value=48 Score=24.77 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=33.7
Q ss_pred HHHHHHHHccCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCC--HhHHHHHHHHHHHcCCCCC
Q 010881 158 TSLINGYAKSGQISIARQMFDKMPEKN---AVSWSAMINGYVQVDL--FKEALEHFNYMQLCGFRPN 219 (498)
Q Consensus 158 ~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 219 (498)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 455666666677777777777766541 1223333334444332 3456666666666554443
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.10 E-value=72 Score=27.51 Aligned_cols=77 Identities=9% Similarity=0.156 Sum_probs=32.7
Q ss_pred HhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHhCCCHhHHHHHHH
Q 010881 134 ATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMINGYVQVDLFKEALEHFN 209 (498)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (498)
+..|+.+-+.-+++....+ +...+.+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-+++
T Consensus 103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 3445555555554443222 2222223333444456665555555544322 11122233344455666554444443
Q ss_pred H
Q 010881 210 Y 210 (498)
Q Consensus 210 ~ 210 (498)
.
T Consensus 183 ~ 183 (285)
T 3kea_A 183 Y 183 (285)
T ss_dssp H
T ss_pred c
Confidence 3
No 292
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.45 E-value=46 Score=26.94 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH
Q 010881 349 LEAAKKVVREMPIEPDN--YVL-----GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420 (498)
Q Consensus 349 ~~~A~~~~~~~~~~p~~--~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 420 (498)
++.|+.+|+.+.-.-+. ... -..+..|.+.|.+++|.+++++.....+.+...-..|..+-.+...+...++
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 46677777777322221 111 1234579999999999999999888776666566666655555554444433
No 293
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=52.31 E-value=66 Score=26.52 Aligned_cols=112 Identities=9% Similarity=-0.050 Sum_probs=53.6
Q ss_pred HHHHhCCChhhHHHHhhccCCCC---hhhHHHHHHHHHccCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhCCCHhHH
Q 010881 131 HLYATCNCMDPARKLFDMSVNRD---VISWTSLINGYAKSGQISIARQMFDKMPEKNA---VSWSAMINGYVQVDLFKEA 204 (498)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a 204 (498)
...+..|+.+-+..+++....++ ....+ .+...+..|+.+-+.-+++.-..++. .-.+ .+...++.|+.+-+
T Consensus 116 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v 193 (237)
T 3b7b_A 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENI-CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCV 193 (237)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCccCCCCCC-HHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHH
Confidence 33445566666666666544332 11111 23333445676666666655433221 1111 23334456665433
Q ss_pred HHHHHHHHHcCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881 205 LEHFNYMQLCGFRPNHA--GIVGALTACAFLGALDQGRWIHAYVDR 248 (498)
Q Consensus 205 ~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (498)
+.+.+.|..++.. .-.+.+......|+.+.+.++.+.+.+
T Consensus 194 ----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 194 ----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp ----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455544321 111234445566777777777776654
No 294
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.96 E-value=1.4e+02 Score=26.64 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=68.2
Q ss_pred HHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH----FNYMQLCGFRPNHAGIVGALTACAFLG 234 (498)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~ 234 (498)
++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344445555555555554321 12234444554444333 244445566777766666666665443
Q ss_pred ChH-HHHHHHHHH----HHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 010881 235 ALD-QGRWIHAYV----DRNG--IELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299 (498)
Q Consensus 235 ~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 299 (498)
.-+ .=..+.+.+ .+.| -.-|+.....+...|.+.+++.+|+..|-.-.++.+..+..++--+...
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 211 112222222 2333 1235677788889999999999999888432223335565554444443
No 295
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.68 E-value=2.1e+02 Score=28.49 Aligned_cols=220 Identities=11% Similarity=0.074 Sum_probs=101.2
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh---
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK--- 267 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 267 (498)
....+.-.|+++.|++++-.. ...+.+++.+.+..+.-.+- ...++.. +.+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHhh
Confidence 445566789999999887754 35566666666665443332 1111110 001 11 1225667777764
Q ss_pred cCCHHHHHHHHhhCCCCC-h----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC--CC-C-hHHH--
Q 010881 268 CGCIETACSVFDSMPNRD-V----FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI--EP-G-VQHY-- 336 (498)
Q Consensus 268 ~g~~~~A~~~~~~~~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~--~~-~-~~~~-- 336 (498)
..+...|.+.|--+..++ . ..+.++-......+.++ .++..+...|..-. ....++.. .. | ....
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~---~LLG~i~~dG~r~~-G~i~~~~~li~l~d~~~~~~~ 444 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT---VLLGKIGRDGARIP-GVIEERQPLLHVRDEKEFLHT 444 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH---HHHCEECTTSCEEC-CHHHHTCGGGTCSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH---HHcCCcCCCCCcCc-chHHHhhcccccccHHHHHHH
Confidence 578888888777664333 1 12222222333333322 11111111111100 12222111 11 1 1112
Q ss_pred --HHHHHHHhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcC---------------C-HHHHHHHHHHHHhc--
Q 010881 337 --GCLVDLLGRAGMLEAAKKVVREMPIEPD--NYVLGALLNACRVHG---------------D-VDLGKETVESLVER-- 394 (498)
Q Consensus 337 --~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g---------------~-~~~A~~~~~~~~~~-- 394 (498)
.....-+...|++++|..+|.-.+ ..| ....+.++.-....- + ...|.++.+.....
T Consensus 445 i~~~aA~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~ 523 (661)
T 2qx5_A 445 ITEQAARRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAG 523 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCch
Confidence 223345667899999999988875 222 334444444332211 1 12333333332211
Q ss_pred -----CCCCchHHHH---HHHHh--HhcCCcchHHHHHHhhh
Q 010881 395 -----SLDHEGVHVL---LSNIY--ASTEQWNGVEKVRRGME 426 (498)
Q Consensus 395 -----~~~~~~~~~~---l~~~~--~~~g~~~~a~~~~~~m~ 426 (498)
.+.+..++.. +..++ .+.|+|++|++.++++.
T Consensus 524 ~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 524 ISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 1112233443 33333 78999999999887763
No 296
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.42 E-value=1.3e+02 Score=25.56 Aligned_cols=19 Identities=5% Similarity=-0.192 Sum_probs=8.3
Q ss_pred CCChhHHHHHHHHHHhcCC
Q 010881 252 ELDIILGTAIIDMYAKCGC 270 (498)
Q Consensus 252 ~~~~~~~~~l~~~~~~~g~ 270 (498)
.++..+-...+.++...|+
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3444444445555555444
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.22 E-value=42 Score=25.98 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCC--HhHHHHHHHHHHHcCCCC
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPEKN---AVSWSAMINGYVQVDL--FKEALEHFNYMQLCGFRP 218 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 218 (498)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3455566666667777777776665541 2223333334443222 344556666666555443
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.29 E-value=1.1e+02 Score=25.00 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=9.3
Q ss_pred HhCCCchHHHHHHHHhHHCC
Q 010881 64 AEKNEPIKAFALYKQMLRSD 83 (498)
Q Consensus 64 ~~~~~~~~A~~~~~~m~~~~ 83 (498)
++.|+.+....+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555444444444433
No 299
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.78 E-value=1.6e+02 Score=26.24 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=12.4
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 010881 263 DMYAKCGCIETACSVFDSM 281 (498)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~ 281 (498)
...+..|+.+-+..+++.-
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHhcc
Confidence 3445677777777777653
No 300
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.52 E-value=1.1e+02 Score=27.29 Aligned_cols=96 Identities=9% Similarity=-0.124 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHH
Q 010881 19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR---TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95 (498)
Q Consensus 19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 95 (498)
|..-.+.|. ..+.. |+.+.+..+++.-..+ |..-++.|. ..+..|+.+-+. .+.+.|..++...-.+.+
T Consensus 17 d~~g~t~L~-~Aa~~--g~~~~v~~Ll~~g~~~~~~d~~g~t~L~-~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L 88 (364)
T 3ljn_A 17 DDENMEKIH-VAARK--GQTDEVRRLIETGVSPTIQNRFGCTALH-LACKFGCVDTAK----YLASVGEVHSLWHGQKPI 88 (364)
T ss_dssp CHHHHHHHH-HHHHH--TCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHCCHHHHH----HHHHHCCCCCCBTTBCHH
T ss_pred CCCCCCHHH-HHHHc--CCHHHHHHHHHcCCCccccCCCCCcHHH-HHHHcCCHHHHH----HHHHCCCCccccCCCCHH
Confidence 333344443 44445 8888888888763332 222233333 334456654443 333334444432222334
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCc
Q 010881 96 RACADTSCLFVGLICHAQVIRLGWESY 122 (498)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 122 (498)
...+..|+.+-+..+++.....|..++
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 444566777777777666555555443
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.22 E-value=2.4e+02 Score=29.53 Aligned_cols=127 Identities=9% Similarity=-0.064 Sum_probs=70.8
Q ss_pred HHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 010881 160 LINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239 (498)
Q Consensus 160 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 239 (498)
++..+...|..+-|.++...++. +...-..+..+|...|++++|...|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55667778888888887777765 44444567889999999999999998763 233221100000 0000
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCh----hHHHHHHHHHHhcC
Q 010881 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP----NRDV----FAYTSLISGLANHD 300 (498)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~ 300 (498)
..++.... . ......-|..++..+-+.+.++.+.++-+... ..|. ..|+.+.++.+..|
T Consensus 884 ~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01111000 0 01122366777777777777777665544332 2232 25666666655443
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.03 E-value=1e+02 Score=25.86 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=41.5
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLC--GFRP----NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM 264 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (498)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 456777788888888887776531 1221 11111222222222222223333333332 1 3334444455566
Q ss_pred HHhcCCHHHHHHHHhh
Q 010881 265 YAKCGCIETACSVFDS 280 (498)
Q Consensus 265 ~~~~g~~~~A~~~~~~ 280 (498)
+.+.|+.+.|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 6666666666666543
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.95 E-value=1.2e+02 Score=24.84 Aligned_cols=85 Identities=14% Similarity=-0.030 Sum_probs=46.6
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhhHHHHhhccCCCCh---hhHHHHHHHHHccCC
Q 010881 95 LRACADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCMDPARKLFDMSVNRDV---ISWTSLINGYAKSGQ 169 (498)
Q Consensus 95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~ 169 (498)
+...+..|+.+.+..+++.+.+.|..++... ..+.+...+..|+.+-+..+++....++. ...+ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 3444567888888888777766665443221 12334445567777777666665543321 1122 2233345566
Q ss_pred HHHHHHHHhhC
Q 010881 170 ISIARQMFDKM 180 (498)
Q Consensus 170 ~~~A~~~~~~~ 180 (498)
.+-...+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 66666665554
No 304
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=43.94 E-value=57 Score=27.80 Aligned_cols=50 Identities=10% Similarity=-0.099 Sum_probs=24.8
Q ss_pred HhCCCchHHHHHHHHhHHCCCCC-------CcchHHHHHHHHH--ccCCcHHHHHHHHH
Q 010881 64 AEKNEPIKAFALYKQMLRSDFLP-------NNYTFSFILRACA--DTSCLFVGLICHAQ 113 (498)
Q Consensus 64 ~~~~~~~~A~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~g~~~~a~~~~~~ 113 (498)
++.|+.+....+++...+.+... |..-.+.|..++. +.|+.+-+..+++.
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 45566666666666555444222 2223334444433 24666655555554
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.94 E-value=1.1e+02 Score=26.23 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=49.8
Q ss_pred HHHHHhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhH
Q 010881 130 LHLYATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKE 203 (498)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 203 (498)
+...+..|+.+-+..+++....+ |...++.| ...+..|+.+-+.-+++.-..+ +..-+.+.+...+..|+.+-
T Consensus 66 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~ 144 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144 (285)
T ss_dssp HHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH
Confidence 33344555555555555544332 22222222 3334567777666666653322 22222233444555666543
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHH
Q 010881 204 ALEHFNYMQLCGFRPNHA-GIVGALTACAFLGALDQGRWIHAY 245 (498)
Q Consensus 204 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 245 (498)
.+.+.+.|..+... .-.+.+...+..|..+-+..+++.
T Consensus 145 ----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 145 ----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp ----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 34444444333111 222333444455666555554443
No 306
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.84 E-value=1.1e+02 Score=26.98 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=32.5
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881 360 PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399 (498)
Q Consensus 360 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 399 (498)
++.|. .-++..-+....+.+++..|..+.+++++++|...
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 66664 34566777888999999999999999999998643
No 307
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=40.29 E-value=79 Score=21.81 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHH
Q 010881 6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKA 72 (498)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 72 (498)
.+.+.+...|+- +...+..+.. .. ...+.|+.+++.++.++..+|..++.++...+...-|
T Consensus 26 ~lld~L~~~~vl-t~~~~e~I~~---~~--t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFL-TISEEEKVRN---EP--TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHT---SS--SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHHc---CC--ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 456666666644 2333333222 23 6678888888888888888888888888777654443
No 308
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.91 E-value=1.7e+02 Score=24.78 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHhccCC
Q 010881 219 NHAGIVGALTACAFLGA 235 (498)
Q Consensus 219 ~~~~~~~ll~~~~~~~~ 235 (498)
+...-...+.++...++
T Consensus 205 ~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333344444444443
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.27 E-value=2.5e+02 Score=26.42 Aligned_cols=127 Identities=17% Similarity=0.041 Sum_probs=68.1
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchh
Q 010881 247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM 323 (498)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 323 (498)
.+.|++--...|..-.+.+...|++++|.++--..+. ++..|.+.+-..=...|+..--+.+|.-+.+.| .
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~----- 426 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q----- 426 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C-----
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c-----
Confidence 3445555555566666677777888887777665544 455555544444444455566666666666654 1
Q ss_pred hhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881 324 SEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL 391 (498)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 391 (498)
.+..----+++.-...|+.+-....+.+=.+..+...=. ++ +..+..-|+.+|.++
T Consensus 427 -------Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 427 -------LNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGD-LV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred -------cchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHh-hh----hhcCHHHHHHHHHHc
Confidence 122222234555556666666666666655555443222 11 223445555555443
No 310
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.17 E-value=1.5e+02 Score=23.98 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=51.3
Q ss_pred HHHhhcCCCCChhHHHHHhhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc---hHHHHHHHHH
Q 010881 27 IGFCSASDIGDLSHGYRLFVCLQ----YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY---TFSFILRACA 99 (498)
Q Consensus 27 ~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~ 99 (498)
+...++. |+++....+++.-+ .++..-++.|..+ +..|+.+ +++.+.+.|..++.. ..+.+ ...+
T Consensus 10 l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 81 (231)
T 3aji_A 10 ICNLAYS--GKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSPL-HIAA 81 (231)
T ss_dssp HHHHHHH--TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCHH-HHHH
T ss_pred HHHHHHh--CCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCHH-HHHH
Confidence 3344455 88888888876532 2333333344333 3445543 344444555444332 22223 2333
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhhHHHHhhccC
Q 010881 100 DTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCMDPARKLFDMSV 150 (498)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (498)
..|+.+ +++.+++.|..++... ..+.+...+..|+.+-+..+++...
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 130 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 445544 3344455554433211 1122333445566665555555443
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.94 E-value=1.8e+02 Score=26.74 Aligned_cols=134 Identities=14% Similarity=-0.037 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCCChhH--HHHHHHHhhcCCCCChhHHHHHhhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 010881 6 QIQSHLTVSGTLWDPFA--VGKIIGFCSASDIGDLSHGYRLFVCLQYR---TTFIWNTMIRGFAEKNEPIKAFALYKQML 80 (498)
Q Consensus 6 ~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 80 (498)
++...+++.|..|+... ..+.+...+.. |+.+-+..+++.-... +..-.+. +...+..|+.+-+. .+.
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll 100 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNMVK----LLL 100 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHH--TCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHHHH----HHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHHH----HHH
Confidence 56677777887765421 22334444555 8888888888764332 2222233 33334456654333 333
Q ss_pred HCCCCCCcch--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCCChhhHHHHhhccC
Q 010881 81 RSDFLPNNYT--FSFILRACADTSCLFVGLICHAQVIRLGWESYDF--VLNGLLHLYATCNCMDPARKLFDMSV 150 (498)
Q Consensus 81 ~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (498)
+.|..|+... -.+.+...+..|+.+.+..++ +.+..++.. ...+.+...+..|+.+-+..+++...
T Consensus 101 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170 (437)
T ss_dssp HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 3344333221 112233334455555444433 333222110 01122333445566665555555443
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.82 E-value=3.5e+02 Score=28.33 Aligned_cols=128 Identities=12% Similarity=-0.027 Sum_probs=75.8
Q ss_pred HHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHH
Q 010881 129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEAL 205 (498)
Q Consensus 129 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~ 205 (498)
++..+...|.++-|.++...+.. ++..--.+..+|...|++++|...|++.-.. +..... ..+...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------~~~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------VLREFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG----------GGHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc----------chhhhh
Confidence 66677778888888877665554 5444456778899999999999999987531 100000 000111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcC
Q 010881 206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI----ILGTAIIDMYAKCG 269 (498)
Q Consensus 206 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 269 (498)
.++..... ......-|..++..+-+.+.++.+.++-+.+.+.--.-|. ..++.+.++.+..|
T Consensus 885 ~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11111100 0112235667777788888888888887777764322232 35666777766554
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.09 E-value=81 Score=30.18 Aligned_cols=66 Identities=8% Similarity=0.063 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----H--HHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881 333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD----N--YVLG-ALLNACRVHGDVDLGKETVESLVERSLDH 398 (498)
Q Consensus 333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 398 (498)
...++.++..|...+.++.|..+..+..+..+ . ..|. .+...+...+++.+|.+.+..+...-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 67789999999999999999999999832222 1 1222 23456678899999999999988766543
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.96 E-value=1.1e+02 Score=22.69 Aligned_cols=67 Identities=7% Similarity=-0.034 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCCCh
Q 010881 188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA--LDQGRWIHAYVDRNGIELDI 255 (498)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 255 (498)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.+. .+.+..++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456788888899999999999887421110 11223333344443322 34556666666665544333
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.62 E-value=1.7e+02 Score=23.76 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=40.4
Q ss_pred HHHHHHHHH---hCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhC
Q 010881 188 WSAMINGYV---QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA-----LDQGRWIHAYVDRNG 250 (498)
Q Consensus 188 ~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 250 (498)
+..+|+++. +-.+++.|+-.+-+|++.| .|....-..++-+....|. +..|...++.....|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 83 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG 83 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 344556654 4588999999999999999 7766666666666655553 233444455555555
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.57 E-value=1.4e+02 Score=26.76 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=15.9
Q ss_pred HHHHHHHhCCChhhHHHHhhccCCC
Q 010881 128 GLLHLYATCNCMDPARKLFDMSVNR 152 (498)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~~~ 152 (498)
.++.-|...|+.++|.+.++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 4555666666777777777666544
No 317
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.19 E-value=1.3e+02 Score=23.84 Aligned_cols=180 Identities=8% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCC
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCN 137 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 137 (498)
+...+..|+.+....++..-...--.+|..-.+.|..++.... .++.+.+++.|..++... ..+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred ChhhHHHHh-hccCCCChhhHH--HHHHHHHccCCHHHHHHHHhhC-CCC---ChhHHHHHHHHHHhCCCHhHHHHHHHH
Q 010881 138 CMDPARKLF-DMSVNRDVISWT--SLINGYAKSGQISIARQMFDKM-PEK---NAVSWSAMINGYVQVDLFKEALEHFNY 210 (498)
Q Consensus 138 ~~~~a~~~~-~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~~-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (498)
+.+-+..++ ......+..... +.+...+..|+.+-+..+++.- ... +..-.+.+..+.........-.++.+.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Q ss_pred HHHcCCCCCHHHHH--HHHHHHhccCChHHHHHHHH
Q 010881 211 MQLCGFRPNHAGIV--GALTACAFLGALDQGRWIHA 244 (498)
Q Consensus 211 m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~ 244 (498)
+.+.|..++..... +.+...+..|+.+-+..+++
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 318
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.44 E-value=1.9e+02 Score=25.38 Aligned_cols=272 Identities=11% Similarity=0.037 Sum_probs=123.1
Q ss_pred HHHHHHhhcCCCCChhHHHHHhhhcCCCCcc----hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch--HHHHHHH
Q 010881 24 GKIIGFCSASDIGDLSHGYRLFVCLQYRTTF----IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT--FSFILRA 97 (498)
Q Consensus 24 ~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~ 97 (498)
++.+...++. |+++.++.+++.-..+|.. -++.|. ..+..|+.+ +.+.+.+.|..|+... ....+..
T Consensus 26 ~t~L~~Av~~--g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 26 NHLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQMSRED----IVELLLRHGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred ChHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHcCCHH----HHHHHHHcCCchhhhccCCCchhHH
Confidence 4444455566 8999999988874443321 133333 344566654 3444455555443321 1111122
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhCCChhhHHHHhhccCCCCh-------------hhHHHHH
Q 010881 98 CADTSCLFVGLICHAQVIRLGWESYD---FVLNGLLHLYATCNCMDPARKLFDMSVNRDV-------------ISWTSLI 161 (498)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------------~~~~~li 161 (498)
....+..... ......+..++. .-.+ .+...+..|..+-+..+++.....+. .-.+. +
T Consensus 99 ~~~~~~~~~~----~~~~~~~~~~~~~d~~g~t-~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~-L 172 (337)
T 4g8k_A 99 AAIAGSVKLL----KLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA-L 172 (337)
T ss_dssp HHHHTCHHHH----HHHHTTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH-H
T ss_pred HHhcccchhh----HHhhhccchhhhhccCCCC-HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH-H
Confidence 2222332222 222233322221 1111 23334556777777666665432211 11222 3
Q ss_pred HHHHccCCHHHHHHHHhhCC-C---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCC
Q 010881 162 NGYAKSGQISIARQMFDKMP-E---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG--IVGALTACAFLGA 235 (498)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~ 235 (498)
...++.|+.+-+..++++.. . .+....+.+..+.... .......+.+.+.+.|..++... -.+.+...+..|.
T Consensus 173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 33456688887777776532 1 2222222333222222 12222334444566676654321 1123344456666
Q ss_pred hHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010881 236 LDQGRWIHAYVDRNGIELDI---ILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312 (498)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (498)
.+.+..++.. .|..++. .-.+.| ..-++.|+.+-+.-+++.-..+|..+ .|. .-++.|+.+ +.+-+
T Consensus 252 ~~~v~~Ll~~---~~~~vn~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GAd~n~~~--~L~-~A~~~~~~~----iv~~L 320 (337)
T 4g8k_A 252 LGLVQRLLEQ---EHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCGD--LVM-TARRNYDHS----LVKVL 320 (337)
T ss_dssp HHHHHHHHTS---TTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHTTSCSSTTCC--HHH-HHHHTTCHH----HHHHH
T ss_pred hHHHHHHHHh---cCCcccCcCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCC--HHH-HHHHcCCHH----HHHHH
Confidence 6655544321 2332222 112233 33456788877777776544444432 222 233455543 45566
Q ss_pred HHcCCCCC
Q 010881 313 QLEGVVPN 320 (498)
Q Consensus 313 ~~~~~~p~ 320 (498)
++.|-.||
T Consensus 321 l~~GA~~d 328 (337)
T 4g8k_A 321 LSHGAKED 328 (337)
T ss_dssp HHTTCCC-
T ss_pred HHCcCCCC
Confidence 77776665
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.43 E-value=31 Score=29.24 Aligned_cols=54 Identities=11% Similarity=-0.149 Sum_probs=34.4
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhH-------HHHHHHHHH--hCCChhhHHHHhhc
Q 010881 95 LRACADTSCLFVGLICHAQVIRLGWESYDFV-------LNGLLHLYA--TCNCMDPARKLFDM 148 (498)
Q Consensus 95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~ 148 (498)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3344567889888888888888876655332 233433332 56777777766654
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.10 E-value=1.1e+02 Score=23.31 Aligned_cols=59 Identities=10% Similarity=-0.000 Sum_probs=29.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010881 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270 (498)
Q Consensus 211 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (498)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445555544322 2333333344445566666666555444455555555555555553
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.77 E-value=1.5e+02 Score=22.71 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=29.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010881 211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC 270 (498)
Q Consensus 211 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 270 (498)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4445555443322 2333444444455666666666665544555555555566665553
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.65 E-value=1.1e+02 Score=20.27 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=39.2
Q ss_pred HhHHCCCCCCcchHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 78 QMLRSDFLPNNYTFSFILRACADTS-CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 78 ~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.++..+..|..-.+..+...|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3556677665544 34555555554 4566778888887777666777766677777666644
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.48 E-value=1.8e+02 Score=23.57 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=32.9
Q ss_pred HHHHHHHH---hCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881 189 SAMINGYV---QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG 234 (498)
Q Consensus 189 ~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 234 (498)
..+|+++. +-.+++.|+-.+-+|++.|-.|....-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34556654 45889999999999999987777666666666655444
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.35 E-value=3e+02 Score=25.22 Aligned_cols=296 Identities=14% Similarity=0.076 Sum_probs=144.0
Q ss_pred HHHhhcCCCCChhHHHHHhhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch--HHHHHHHHHcc
Q 010881 27 IGFCSASDIGDLSHGYRLFVCLQYRTT---FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT--FSFILRACADT 101 (498)
Q Consensus 27 ~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 101 (498)
+...+.. |+++-++.+++.-..++. ... +.+...+..|+.+-+.-+++ .|..++... -.+.+...+..
T Consensus 18 L~~Aa~~--g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 18 LHVASFM--GHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp HHHHHHH--TCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHC
Confidence 4444555 899999999886444332 222 23444455677665544443 344332211 12234444556
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHH
Q 010881 102 SCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQM 176 (498)
Q Consensus 102 g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~ 176 (498)
|+.+- .+.+++.|..++... ..+.+...+..|+.+.+..+++..... +...++ .+...+..|+.+-+.-+
T Consensus 91 g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 91 GHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAELL 165 (437)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred CCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHHHH
Confidence 76654 444555665544221 122344556678888888888765432 222222 34445567888877777
Q ss_pred HhhCCCCCh---hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881 177 FDKMPEKNA---VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI--VGALTACAFLGALDQGRWIHAYVDRNGI 251 (498)
Q Consensus 177 ~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 251 (498)
++.-..++. ...+ .+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+-+..+ .+.|.
T Consensus 166 l~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L----l~~g~ 236 (437)
T 1n11_A 166 LERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL----LQYGG 236 (437)
T ss_dssp HHTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH----HHTTC
T ss_pred HhCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH----HHcCC
Confidence 765443321 1122 233445666654 34445555554433211 1233344556666544444 44443
Q ss_pred CCChhH--HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881 252 ELDIIL--GTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI 326 (498)
Q Consensus 252 ~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 326 (498)
.++... -...+...+..|..+-+.-+++.-... +....+.|. ..+..|+.+- .+.+.+.|..++.
T Consensus 237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~----- 306 (437)
T 1n11_A 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPV----ADVLIKHGVMVDA----- 306 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHH----HHHHHHHTCCTTC-----
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCccCCC-----
Confidence 333211 112233445678887777777654432 222222332 2334555543 3444445554441
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881 327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358 (498)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 358 (498)
.+....+. +...+..|+.+-+.-+++.
T Consensus 307 ----~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 307 ----TTRMGYTP-LHVASHYGNIKLVKFLLQH 333 (437)
T ss_dssp ----CCSSCCCH-HHHHHHSSCSHHHHHHHHT
T ss_pred ----CCCCCCCH-HHHHHHcCcHHHHHHHHhc
Confidence 11111122 2333456777766666654
No 325
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.68 E-value=2.1e+02 Score=23.22 Aligned_cols=24 Identities=8% Similarity=-0.142 Sum_probs=13.9
Q ss_pred HHHHhCCCHhHHHHHHHHHHHcCC
Q 010881 193 NGYVQVDLFKEALEHFNYMQLCGF 216 (498)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~g~ 216 (498)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455666666666666666554
No 326
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.87 E-value=89 Score=24.13 Aligned_cols=68 Identities=7% Similarity=-0.032 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--hHHHHHHHHHHHHhCCCCCh
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA--LDQGRWIHAYVDRNGIELDI 255 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 255 (498)
..+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+.+.++-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3456788888899999999999888421100 12223333444443222 34555666666665544333
No 327
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.52 E-value=1.4e+02 Score=28.54 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881 336 YGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS 411 (498)
Q Consensus 336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (498)
...|.+...-...++.|...|.++ .+.| +...||.|.-.....|+.-+|.-.|-+.+....+.+.+...|...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 334445555556667777777776 4445 556777777766667777777777777666555556666666665544
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.94 E-value=1.9e+02 Score=23.41 Aligned_cols=85 Identities=11% Similarity=-0.056 Sum_probs=37.2
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCC
Q 010881 60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCN 137 (498)
Q Consensus 60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g 137 (498)
+...++.|+.+....+++.-...-..++....+.|. ..+..|+.+- ++.+++.|..++... -.+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 445556777777776666532211112222222333 3344555443 334445554433211 112223333445
Q ss_pred ChhhHHHHhhcc
Q 010881 138 CMDPARKLFDMS 149 (498)
Q Consensus 138 ~~~~a~~~~~~~ 149 (498)
+.+-+..+++..
T Consensus 85 ~~~~v~~Ll~~g 96 (231)
T 3aji_A 85 XDEIVKALLVKG 96 (231)
T ss_dssp CHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 555555555443
No 329
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.36 E-value=89 Score=26.17 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=14.0
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCCC
Q 010881 62 GFAEKNEPIKAFALYKQMLRSDFLPN 87 (498)
Q Consensus 62 ~~~~~~~~~~A~~~~~~m~~~~~~p~ 87 (498)
..++.|+.+....+++.+.+.|..++
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 33455666665556665555554433
No 330
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.82 E-value=3.4e+02 Score=24.48 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881 187 SWSAMINGYVQVDLFKEALEHFNYMQ 212 (498)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (498)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45677888888899999888888864
No 331
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.57 E-value=2.5e+02 Score=22.96 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHh---CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHhC
Q 010881 186 VSWSAMINGYVQ---VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA-----LDQGRWIHAYVDRNG 250 (498)
Q Consensus 186 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 250 (498)
..+..+|+++.+ -.+++.|+-.+-+|++.|-.|....-..++-+.-..|. +..|...++.....|
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 344456666654 58899999999999999988877776677766655542 234444455555555
No 332
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.28 E-value=97 Score=21.65 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=15.5
Q ss_pred hhhHHHHhhccCCCChhhHHHHHHHHHccCCHH
Q 010881 139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQIS 171 (498)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (498)
.+.|.++++.++...+.+|..++.++...|+..
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 444444444444444444444444444444433
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.11 E-value=1.7e+02 Score=22.08 Aligned_cols=60 Identities=5% Similarity=-0.156 Sum_probs=34.7
Q ss_pred hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.++..+..|..--++.+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 455566554443 234444444455556777777776666666666655566666666654
No 334
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.10 E-value=3.3e+02 Score=24.05 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=77.4
Q ss_pred CchHHHHHHHHhHHC-C----CCCCcchHHHH---HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 68 EPIKAFALYKQMLRS-D----FLPNNYTFSFI---LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 68 ~~~~A~~~~~~m~~~-~----~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+-+.|..+|..+... + ..|+....... +..+.+.-+ -++++.+.+.|+.|...+..=++..+...=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888887653 2 33443332222 122222222 25677788889888888888788888777778
Q ss_pred hhHHHHhhccCC--CChhhHHH--HHHH----HHccCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhCCCH
Q 010881 140 DPARKLFDMSVN--RDVISWTS--LING----YAKSGQISIARQMFDK-MPEKNAVSWSAMINGYVQVDLF 201 (498)
Q Consensus 140 ~~a~~~~~~~~~--~~~~~~~~--li~~----~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 201 (498)
+.+.++++-... +....+-+ ++.. ..+..+.++....+.. .+..+......++.-.......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~s 310 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDIA 310 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCch
Confidence 888888886542 22222211 2211 2345689999999987 4444555566666555555443
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.47 E-value=1.5e+02 Score=22.58 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=43.3
Q ss_pred HHhHHCCCCCCcchHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 010881 77 KQMLRSDFLPNNYTFSFILRACADTS-CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140 (498)
Q Consensus 77 ~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 140 (498)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|..--++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345667777665543 4555555555 66778899999988887777777666777777777553
No 336
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.42 E-value=1e+02 Score=19.26 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=15.2
Q ss_pred hCCCchHHHHHHHHhHHCCCCCC
Q 010881 65 EKNEPIKAFALYKQMLRSDFLPN 87 (498)
Q Consensus 65 ~~~~~~~A~~~~~~m~~~~~~p~ 87 (498)
..|+.+.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35677777777777766555554
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.39 E-value=1.2e+02 Score=23.68 Aligned_cols=68 Identities=9% Similarity=0.076 Sum_probs=42.3
Q ss_pred hHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCC
Q 010881 202 KEALEHFNY-MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN--GIELDIILGTAIIDMYAKCGC 270 (498)
Q Consensus 202 ~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 270 (498)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 444444433 445677765443 44556666666777788888888776 555566666666677777774
No 338
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=26.19 E-value=1.9e+02 Score=24.76 Aligned_cols=118 Identities=12% Similarity=0.003 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhcCCCCChhHHHHHhhhcC--------------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 010881 21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQ--------------YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP 86 (498)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 86 (498)
....+.+...+.. |+.....+.....+ ..+..-++.|. ..+..|+.+.+ +.+.+.|..+
T Consensus 13 ~~~~~~lH~Aa~~--g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~-~Aa~~g~~~~v----~~Ll~~g~~~ 85 (285)
T 3d9h_A 13 GLVPRGSHMASMD--GKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH-EAAIHGHQLSL----RNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHH-HHHHTTCHHHH----HHHHHTTCCS
T ss_pred hHHHHHHHHHhhc--CCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHH-HHHHcCCHHHH----HHHHHCCCCC
Confidence 3344556666666 77777776443321 12333334443 34556665443 4444455544
Q ss_pred Ccc---hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhhHHHHhhccC
Q 010881 87 NNY---TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV--LNGLLHLYATCNCMDPARKLFDMSV 150 (498)
Q Consensus 87 ~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (498)
+.. -.+. +...+..|+.+-+ +.+++.|..++... ..+.+...+..|..+-+..+++...
T Consensus 86 ~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 149 (285)
T 3d9h_A 86 NIITADHVSP-LHEACLGGHLSCV----KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149 (285)
T ss_dssp CEECTTCCCH-HHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCcCCCCCCH-HHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC
Confidence 332 2223 3333455665433 33444454433211 1112233334455555555555433
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.53 E-value=76 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=14.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 010881 339 LVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 339 l~~~~~~~g~~~~A~~~~~~~ 359 (498)
.+-.|.+.|.+++|.+++++.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 344567777777777777776
No 340
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.59 E-value=3e+02 Score=22.80 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881 302 SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359 (498)
Q Consensus 302 ~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 359 (498)
.++...+|..|...|+--. -...|......+-..|++.+|.++|+.-
T Consensus 130 ~~~p~~if~~L~~~~IG~~-----------~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQE-----------SSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTT-----------BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577789999998876444 3667778888888888888888888765
No 341
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.51 E-value=1.4e+02 Score=23.19 Aligned_cols=70 Identities=6% Similarity=0.008 Sum_probs=48.1
Q ss_pred hHHHHHHHHh-HHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCChh
Q 010881 70 IKAFALYKQM-LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL--GWESYDFVLNGLLHLYATCNCMD 140 (498)
Q Consensus 70 ~~A~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 140 (498)
+.+++-+.+. .+.|++++.. =..++..+...+..-.|.++++.+.+. ++..+..|..--++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4455555443 4557776544 345666777777778888999998888 77777777666777888887654
No 342
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.18 E-value=1.7e+02 Score=22.27 Aligned_cols=63 Identities=3% Similarity=-0.038 Sum_probs=41.0
Q ss_pred HHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 010881 77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD 140 (498)
Q Consensus 77 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 140 (498)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.++..+..|..--++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34556677655443 3455555556667778888888888877777777666777777777653
No 343
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.90 E-value=81 Score=21.74 Aligned_cols=28 Identities=18% Similarity=-0.192 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHHhcCcccCCcc
Q 010881 456 VLMEEIVLLLFGIDKHLKSLCFFDDGNE 483 (498)
Q Consensus 456 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~ 483 (498)
.+..++...+++....++..|+.||.-.
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 4556788888888899999999999643
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.90 E-value=1.3e+02 Score=22.32 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 010881 104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN 137 (498)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 137 (498)
.-.|.++++.+.+.++..+..|..-.++.+...|
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444444444444444333444444444
No 345
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.58 E-value=85 Score=19.66 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=20.3
Q ss_pred chHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 010881 69 PIKAFALYKQMLRSDFLPNNYTFSFILRAC 98 (498)
Q Consensus 69 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (498)
.++|...|.+|++..-.+..-||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367788888887654334566777777776
No 346
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.54 E-value=2.6e+02 Score=25.24 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=31.7
Q ss_pred HHHHHHHHHhc-----CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 384 GKETVESLVER-----SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 384 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
++.+|.+++.. +-.+...|..++..+.+.+++.+|++.|-...+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55555555542 234566788899999999999999999877643
No 347
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.48 E-value=1.2e+02 Score=22.68 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=8.7
Q ss_pred CChhHHHHHhhh
Q 010881 36 GDLSHGYRLFVC 47 (498)
Q Consensus 36 g~~~~A~~~~~~ 47 (498)
|+.+.+..+++.
T Consensus 13 g~~~~v~~ll~~ 24 (156)
T 1bd8_A 13 GDVQEVRRLLHR 24 (156)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHh
Confidence 677777777766
No 348
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.43 E-value=1.7e+02 Score=19.21 Aligned_cols=59 Identities=8% Similarity=0.076 Sum_probs=32.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881 210 YMQLCGFRPNHAGIVGALTACAFLG-ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG 269 (498)
Q Consensus 210 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 269 (498)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3455666665443 33444554443 44556667776666654455556555666665554
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.41 E-value=1.2e+02 Score=22.94 Aligned_cols=43 Identities=12% Similarity=-0.097 Sum_probs=19.5
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881 96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC 138 (498)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (498)
..+...+..-.|.++++.+.+.++..+..|..--++.+...|-
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3333333344455555555544444444444444444444443
No 350
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.26 E-value=4.1e+02 Score=23.57 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=39.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCC-CHhHHHHHHHHHHHcCCCCC
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPEKN---AVSWSAMINGYVQVD-LFKEALEHFNYMQLCGFRPN 219 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~ 219 (498)
...++.-|...|+.++|.+.++++..|. ......+..++-+.. .-+.+..++..+.+.|+-+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 4567888999999999999999998763 122222222322221 23455667777776665433
No 351
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.90 E-value=2.4e+02 Score=20.92 Aligned_cols=60 Identities=7% Similarity=-0.016 Sum_probs=34.7
Q ss_pred hHHCCCCCCcchHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881 79 MLRSDFLPNNYTFSFILRACADTS-CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM 139 (498)
Q Consensus 79 m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (498)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|..--++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455665554432 3444444444 5566777777777776666666655566666666654
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.64 E-value=1.4e+02 Score=22.18 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=21.5
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881 191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL 233 (498)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 233 (498)
++..+...+..-.|.++++.+.+.+...+..|..-.|..+...
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3444444444555666666665555444544444444444433
No 353
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.62 E-value=2e+02 Score=25.33 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=38.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCC--HhHHHHHHHHHHHcCCCCC
Q 010881 157 WTSLINGYAKSGQISIARQMFDKMPEKN---AVSWSAMINGYVQVDL--FKEALEHFNYMQLCGFRPN 219 (498)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 219 (498)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4567777777888888888888887652 2233344444444332 3455667777766665443
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.48 E-value=2.9e+02 Score=21.50 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--C-CCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 010881 335 HYGCLVDLLGRAGMLEAAKKVVREM--P-IEP--DNYVLGALLN-A-----CRVHGDVDLGKETVESLVE 393 (498)
Q Consensus 335 ~~~~l~~~~~~~g~~~~A~~~~~~~--~-~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 393 (498)
.|..-+..|- .|++-+|-++++.. . -.+ ....|..||. . ..+.|+...|..++.+++.
T Consensus 35 ~~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444444 48999998888887 2 123 3455666666 2 2557888888888888876
No 355
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.42 E-value=2.4e+02 Score=22.85 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=22.7
Q ss_pred hhHHHHHhhhcCCC-Ccc-------hHHHHHHHHHhCCCchHHHHHHHHhH
Q 010881 38 LSHGYRLFVCLQYR-TTF-------IWNTMIRGFAEKNEPIKAFALYKQML 80 (498)
Q Consensus 38 ~~~A~~~~~~~~~~-~~~-------~~~~li~~~~~~~~~~~A~~~~~~m~ 80 (498)
++.|..+|+.+..- +.. .-...+..|.+.|.+++|.++|++..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 55677777666532 210 11123345666666666666666643
No 356
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.23 E-value=2.6e+02 Score=25.76 Aligned_cols=44 Identities=5% Similarity=-0.105 Sum_probs=32.3
Q ss_pred HHHHHHHHHhc-----CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881 384 GKETVESLVER-----SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427 (498)
Q Consensus 384 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 427 (498)
++.+|.+++.. +-.+...|..++..+.+.+++.+|++.|-...+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 45555555541 234566788999999999999999999977643
No 357
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.90 E-value=1.1e+02 Score=18.70 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=26.1
Q ss_pred hHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCC--hhHHHHHhhhcCCCC
Q 010881 5 KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD--LSHGYRLFVCLQYRT 52 (498)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~--~~~A~~~~~~~~~~~ 52 (498)
++.++.++..|+++.-. ..+..+. |+ ++.|.+.+.+|..|+
T Consensus 10 ~qmlq~L~eMGFd~era-----e~Alk~T--g~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMA-----GRALKQT--GSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHHCCHHHH-----HHHHHHH--TSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHcCCCHHHH-----HHHHHHh--CcccHHHHHHHHHHhcCCC
Confidence 56678888888876422 2223333 33 888888888877654
No 358
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.58 E-value=1.6e+02 Score=21.50 Aligned_cols=42 Identities=10% Similarity=-0.156 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881 207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR 248 (498)
Q Consensus 207 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (498)
+|+.+....+.|+...-..-+..+...++++.|..++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555444434444455666777777777766654
No 359
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.48 E-value=1.2e+02 Score=22.78 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881 192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA 229 (498)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 229 (498)
+..+...+..-.|.++++.+.+.+...+..|..-.|..
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~ 57 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQS 57 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 33344444444455555555544444444443333333
No 360
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.38 E-value=5.4e+02 Score=24.21 Aligned_cols=111 Identities=9% Similarity=-0.030 Sum_probs=64.4
Q ss_pred CChhHHHHHhhhcCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 010881 36 GDLSHGYRLFVCLQYRTTF-IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV 114 (498)
Q Consensus 36 g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 114 (498)
.+.+-|.++..+..-|... .|..-...+..+|++++|..+--...+ |+--+..|.+.+-..=...|...-.+.+|..+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~L 421 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGIL 421 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 5566666666655544322 244445566678888888777665543 44445666555555444556666677777777
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhc
Q 010881 115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDM 148 (498)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 148 (498)
++.| ..+..----+++.-...|+.+-....+.+
T Consensus 422 l~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 422 LDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 7776 33443333455555556666655555543
Done!