Query 010883
Match_columns 498
No_of_seqs 906 out of 3374
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.3E-52 5E-57 358.7 25.9 298 122-482 106-444 (480)
2 KOG0286 G-protein beta subunit 100.0 6.9E-49 1.5E-53 326.1 29.6 296 124-475 48-343 (343)
3 KOG0271 Notchless-like WD40 re 100.0 2.1E-49 4.6E-54 340.5 25.1 304 110-475 136-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-48 6.6E-53 337.7 23.7 284 128-475 172-458 (459)
5 KOG0293 WD40 repeat-containing 100.0 1E-42 2.2E-47 302.2 25.5 305 116-479 209-515 (519)
6 KOG0279 G protein beta subunit 100.0 1.8E-40 3.9E-45 274.4 31.2 291 125-477 9-313 (315)
7 KOG0265 U5 snRNP-specific prot 100.0 1E-40 2.2E-45 278.6 28.4 294 124-475 40-336 (338)
8 KOG0273 Beta-transducin family 100.0 9.6E-41 2.1E-45 294.8 29.7 306 119-484 167-489 (524)
9 KOG0315 G-protein beta subunit 100.0 4.5E-40 9.7E-45 267.6 29.3 282 144-483 11-294 (311)
10 KOG0645 WD40 repeat protein [G 100.0 2E-39 4.4E-44 267.1 31.7 292 124-477 7-311 (312)
11 KOG0284 Polyadenylation factor 100.0 2.7E-41 5.8E-46 293.1 19.8 290 129-481 94-384 (464)
12 KOG0295 WD40 repeat-containing 100.0 3.3E-40 7.2E-45 282.4 26.0 291 122-476 99-405 (406)
13 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-41 9.2E-46 293.2 18.6 250 120-433 206-458 (459)
14 KOG0266 WD40 repeat-containing 100.0 6E-39 1.3E-43 309.9 33.3 290 129-477 157-454 (456)
15 KOG0282 mRNA splicing factor [ 100.0 1.3E-40 2.9E-45 295.0 19.2 300 116-475 199-503 (503)
16 KOG0273 Beta-transducin family 100.0 1.2E-38 2.7E-43 281.4 29.9 280 131-477 235-523 (524)
17 KOG0263 Transcription initiati 100.0 3.6E-40 7.8E-45 309.4 20.3 290 117-481 364-653 (707)
18 KOG0318 WD40 repeat stress pro 100.0 5.2E-37 1.1E-41 274.7 33.3 343 119-482 178-565 (603)
19 KOG0285 Pleiotropic regulator 100.0 1.6E-37 3.6E-42 265.2 28.3 290 124-479 144-441 (460)
20 cd00200 WD40 WD40 domain, foun 100.0 1.8E-36 3.8E-41 279.1 36.8 287 125-475 3-289 (289)
21 KOG0316 Conserved WD40 repeat- 100.0 2.2E-37 4.9E-42 249.8 26.4 290 119-475 5-297 (307)
22 PLN00181 protein SPA1-RELATED; 100.0 2.2E-36 4.9E-41 313.9 39.8 295 126-476 478-792 (793)
23 KOG0315 G-protein beta subunit 100.0 3.8E-37 8.1E-42 250.6 26.3 283 115-456 24-309 (311)
24 KOG0296 Angio-associated migra 100.0 9.4E-37 2E-41 261.5 29.2 325 122-477 55-398 (399)
25 KOG0286 G-protein beta subunit 100.0 6.7E-36 1.5E-40 248.9 29.5 262 170-493 49-320 (343)
26 KOG0279 G protein beta subunit 100.0 4.7E-36 1E-40 248.3 27.4 255 169-482 8-267 (315)
27 KOG0319 WD40-repeat-containing 100.0 1E-36 2.2E-41 283.4 24.0 334 109-484 125-584 (775)
28 KOG0319 WD40-repeat-containing 100.0 3.4E-36 7.4E-41 279.9 24.5 302 122-484 314-626 (775)
29 KOG0281 Beta-TrCP (transducin 100.0 3.9E-37 8.5E-42 262.0 15.3 275 130-482 196-482 (499)
30 KOG0291 WD40-repeat-containing 100.0 3.4E-34 7.3E-39 267.1 34.6 299 122-480 180-511 (893)
31 KOG0318 WD40 repeat stress pro 100.0 1.1E-33 2.5E-38 253.4 36.1 311 108-482 36-355 (603)
32 KOG0291 WD40-repeat-containing 100.0 4.4E-34 9.5E-39 266.4 33.6 294 129-487 263-560 (893)
33 KOG0275 Conserved WD40 repeat- 100.0 7.4E-36 1.6E-40 252.1 18.1 288 129-475 211-507 (508)
34 KOG0276 Vesicle coat complex C 100.0 7.8E-35 1.7E-39 265.8 26.0 286 125-473 7-295 (794)
35 KOG0263 Transcription initiati 100.0 3.2E-35 7E-40 276.2 24.2 206 125-354 445-650 (707)
36 KOG0643 Translation initiation 100.0 5.2E-34 1.1E-38 234.7 27.9 290 124-479 3-319 (327)
37 KOG1407 WD40 repeat protein [F 100.0 7.5E-34 1.6E-38 233.0 26.7 288 125-477 14-311 (313)
38 KOG0278 Serine/threonine kinas 100.0 3.1E-35 6.6E-40 239.6 18.3 292 123-482 6-302 (334)
39 KOG0288 WD40 repeat protein Ti 100.0 1.7E-35 3.7E-40 257.5 17.2 303 111-475 155-459 (459)
40 KOG0281 Beta-TrCP (transducin 100.0 6E-36 1.3E-40 254.8 13.8 251 176-496 197-457 (499)
41 KOG0295 WD40 repeat-containing 100.0 1.7E-34 3.7E-39 247.5 21.8 259 171-484 103-371 (406)
42 KOG0640 mRNA cleavage stimulat 100.0 4E-34 8.6E-39 240.2 22.9 300 123-476 104-425 (430)
43 KOG0772 Uncharacterized conser 100.0 4.8E-34 1.1E-38 255.1 24.3 315 116-475 152-485 (641)
44 KOG0277 Peroxisomal targeting 100.0 9.6E-34 2.1E-38 231.5 23.8 285 134-476 11-308 (311)
45 KOG0284 Polyadenylation factor 100.0 3.1E-35 6.8E-40 255.5 15.4 244 177-481 97-341 (464)
46 KOG0283 WD40 repeat-containing 100.0 8.9E-34 1.9E-38 268.8 25.4 312 125-481 260-580 (712)
47 KOG0285 Pleiotropic regulator 100.0 5.9E-34 1.3E-38 243.5 21.2 248 171-481 146-393 (460)
48 KOG0316 Conserved WD40 repeat- 100.0 8.5E-34 1.8E-38 229.2 20.0 250 171-483 12-263 (307)
49 KOG0313 Microtubule binding pr 100.0 9.7E-33 2.1E-37 238.0 27.7 293 124-478 98-419 (423)
50 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-31 5.2E-36 224.9 33.8 295 125-480 8-306 (311)
51 KOG0266 WD40 repeat-containing 100.0 3.8E-32 8.3E-37 262.6 31.3 254 173-481 156-413 (456)
52 KOG0292 Vesicle coat complex C 100.0 1.3E-32 2.7E-37 260.7 26.7 294 127-479 5-323 (1202)
53 KOG0276 Vesicle coat complex C 100.0 5.2E-33 1.1E-37 254.0 23.1 249 175-481 12-261 (794)
54 KOG0310 Conserved WD40 repeat- 100.0 4.8E-32 1E-36 241.2 27.0 302 118-484 13-316 (487)
55 KOG0306 WD40-repeat-containing 100.0 4.9E-32 1.1E-36 252.7 27.5 287 125-478 367-665 (888)
56 KOG0973 Histone transcription 100.0 3.7E-32 8E-37 264.4 26.5 321 125-486 7-364 (942)
57 KOG0265 U5 snRNP-specific prot 100.0 5.3E-32 1.2E-36 226.6 23.2 252 168-479 39-298 (338)
58 KOG0306 WD40-repeat-containing 100.0 1.1E-31 2.4E-36 250.3 27.6 330 115-483 91-586 (888)
59 KOG0300 WD40 repeat-containing 100.0 3E-32 6.4E-37 229.7 21.4 307 124-479 141-478 (481)
60 KOG0274 Cdc4 and related F-box 100.0 3.2E-31 7E-36 254.9 30.2 282 129-483 206-488 (537)
61 KOG0645 WD40 repeat protein [G 100.0 1.4E-30 3E-35 215.1 29.0 253 169-479 7-263 (312)
62 KOG0292 Vesicle coat complex C 100.0 7.7E-32 1.7E-36 255.4 23.3 285 176-497 9-296 (1202)
63 KOG0641 WD40 repeat protein [G 100.0 1.3E-29 2.8E-34 203.9 31.9 290 131-477 32-349 (350)
64 KOG4283 Transcription-coupled 100.0 4E-31 8.7E-36 220.7 23.6 301 124-476 36-364 (397)
65 KOG0268 Sof1-like rRNA process 100.0 1.8E-32 3.8E-37 235.0 15.2 297 123-488 58-356 (433)
66 PTZ00421 coronin; Provisional 100.0 5.5E-30 1.2E-34 246.3 33.1 278 130-459 19-315 (493)
67 KOG0305 Anaphase promoting com 100.0 1.9E-30 4.2E-35 240.1 28.7 278 135-480 181-464 (484)
68 KOG0299 U3 snoRNP-associated p 100.0 7E-31 1.5E-35 232.1 24.0 306 124-481 135-460 (479)
69 PLN00181 protein SPA1-RELATED; 100.0 9.7E-30 2.1E-34 264.4 36.8 274 152-479 457-740 (793)
70 KOG2096 WD40 repeat protein [G 100.0 1.2E-30 2.6E-35 220.1 23.7 312 125-475 80-400 (420)
71 cd00200 WD40 WD40 domain, foun 100.0 1.7E-29 3.6E-34 232.6 31.6 247 173-480 6-252 (289)
72 KOG0296 Angio-associated migra 100.0 3.2E-30 7E-35 221.5 24.4 286 171-482 59-361 (399)
73 KOG1408 WD40 repeat protein [F 100.0 2.8E-30 6.2E-35 239.5 25.3 338 134-478 327-714 (1080)
74 KOG0289 mRNA splicing factor [ 100.0 1.9E-29 4.2E-34 221.3 27.4 283 131-476 219-505 (506)
75 KOG0282 mRNA splicing factor [ 100.0 3E-31 6.6E-36 235.8 16.0 254 169-482 207-467 (503)
76 KOG0275 Conserved WD40 repeat- 100.0 7.2E-31 1.6E-35 222.0 16.6 258 175-483 212-473 (508)
77 KOG0647 mRNA export protein (c 100.0 3E-29 6.4E-34 210.3 25.7 278 131-465 27-311 (347)
78 KOG0277 Peroxisomal targeting 100.0 9.9E-30 2.2E-34 208.1 18.9 245 131-434 60-308 (311)
79 KOG0293 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 220.5 20.9 292 82-436 209-514 (519)
80 KOG1446 Histone H3 (Lys4) meth 100.0 3.5E-28 7.6E-33 205.8 27.8 252 175-484 13-269 (311)
81 PTZ00421 coronin; Provisional 100.0 3.2E-28 6.9E-33 234.2 31.3 257 178-480 22-293 (493)
82 PTZ00420 coronin; Provisional 100.0 1.1E-27 2.5E-32 231.2 35.1 257 149-460 50-319 (568)
83 KOG0299 U3 snoRNP-associated p 100.0 6.2E-29 1.4E-33 219.8 22.9 263 173-483 139-416 (479)
84 KOG0313 Microtubule binding pr 100.0 1.7E-28 3.7E-33 211.9 22.8 270 121-434 134-417 (423)
85 KOG0264 Nucleosome remodeling 100.0 6.5E-29 1.4E-33 219.7 20.5 271 128-479 121-406 (422)
86 KOG0301 Phospholipase A2-activ 100.0 5.8E-28 1.3E-32 223.9 26.7 285 124-482 7-293 (745)
87 KOG0294 WD40 repeat-containing 100.0 1.8E-27 3.8E-32 200.9 27.1 270 146-482 4-286 (362)
88 PTZ00420 coronin; Provisional 100.0 4.7E-27 1E-31 226.9 32.5 230 194-479 50-295 (568)
89 KOG4328 WD40 protein [Function 100.0 1.1E-27 2.4E-32 211.7 23.5 307 125-476 180-494 (498)
90 KOG0308 Conserved WD40 repeat- 100.0 1.5E-28 3.2E-33 226.1 18.6 291 130-479 20-329 (735)
91 KOG0274 Cdc4 and related F-box 100.0 2.6E-27 5.5E-32 228.1 27.7 258 117-447 234-494 (537)
92 KOG1036 Mitotic spindle checkp 100.0 2.1E-26 4.5E-31 194.2 28.8 279 131-467 13-294 (323)
93 KOG2055 WD40 repeat protein [G 100.0 2.2E-27 4.8E-32 210.0 23.5 295 129-477 211-512 (514)
94 KOG0639 Transducin-like enhanc 100.0 8.3E-28 1.8E-32 214.7 20.3 285 128-476 416-703 (705)
95 KOG1332 Vesicle coat complex C 100.0 4E-28 8.6E-33 197.6 16.4 257 126-435 6-286 (299)
96 KOG0973 Histone transcription 100.0 2.9E-27 6.3E-32 230.5 25.5 264 173-479 10-314 (942)
97 KOG0305 Anaphase promoting com 100.0 6E-27 1.3E-31 217.0 25.7 262 112-437 198-463 (484)
98 KOG0647 mRNA export protein (c 100.0 1.1E-26 2.3E-31 195.1 24.1 247 173-480 24-284 (347)
99 KOG0310 Conserved WD40 repeat- 100.0 1.7E-27 3.7E-32 212.3 20.0 242 177-479 27-270 (487)
100 KOG1408 WD40 repeat protein [F 100.0 1E-26 2.2E-31 216.1 25.1 202 277-484 460-678 (1080)
101 KOG1407 WD40 repeat protein [F 100.0 6E-27 1.3E-31 192.6 20.9 253 171-484 15-268 (313)
102 KOG1273 WD40 repeat protein [G 100.0 1.3E-26 2.9E-31 195.5 23.1 290 134-480 26-325 (405)
103 KOG0289 mRNA splicing factor [ 100.0 9.8E-27 2.1E-31 204.3 23.0 263 112-434 242-505 (506)
104 KOG0294 WD40 repeat-containing 100.0 6.3E-26 1.4E-30 191.6 26.5 265 122-455 34-305 (362)
105 KOG0269 WD40 repeat-containing 100.0 2.7E-27 5.9E-32 222.0 19.8 295 131-480 39-343 (839)
106 KOG2055 WD40 repeat protein [G 100.0 4.2E-27 9.1E-32 208.3 18.6 361 2-435 143-512 (514)
107 KOG0641 WD40 repeat protein [G 100.0 4.1E-25 8.9E-30 178.0 27.5 260 177-480 33-306 (350)
108 KOG0321 WD40 repeat-containing 100.0 3.1E-26 6.8E-31 210.5 23.0 297 135-483 53-397 (720)
109 KOG0650 WD40 repeat nucleolar 99.9 6.3E-26 1.4E-30 206.9 24.5 308 117-474 386-732 (733)
110 KOG2919 Guanine nucleotide-bin 99.9 6.7E-26 1.5E-30 192.0 23.0 283 134-468 52-361 (406)
111 KOG0646 WD40 repeat protein [G 99.9 4.5E-26 9.7E-31 202.2 22.7 275 149-485 13-315 (476)
112 KOG0278 Serine/threonine kinas 99.9 3.3E-27 7.1E-32 192.9 14.3 249 125-440 53-302 (334)
113 KOG1539 WD repeat protein [Gen 99.9 1.5E-25 3.3E-30 212.0 27.4 308 112-483 183-612 (910)
114 KOG1274 WD40 repeat protein [G 99.9 3.9E-25 8.4E-30 211.6 29.2 280 128-474 10-297 (933)
115 KOG1036 Mitotic spindle checkp 99.9 2.7E-25 5.8E-30 187.5 24.8 243 175-482 12-267 (323)
116 KOG0308 Conserved WD40 repeat- 99.9 2.8E-26 6E-31 211.3 20.0 220 124-355 66-287 (735)
117 KOG0772 Uncharacterized conser 99.9 6.3E-26 1.4E-30 203.4 21.3 265 170-481 161-449 (641)
118 KOG1332 Vesicle coat complex C 99.9 2.8E-26 6E-31 186.9 17.3 260 173-481 8-290 (299)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.2E-24 1.1E-28 197.9 34.3 276 143-481 1-283 (300)
120 KOG0288 WD40 repeat protein Ti 99.9 1E-26 2.2E-31 203.1 13.9 250 171-483 170-423 (459)
121 KOG0643 Translation initiation 99.9 9.7E-25 2.1E-29 180.2 24.2 240 170-467 4-251 (327)
122 KOG0300 WD40 repeat-containing 99.9 2.1E-25 4.6E-30 188.5 20.3 270 145-485 126-436 (481)
123 KOG2445 Nuclear pore complex c 99.9 8.6E-25 1.9E-29 184.1 23.0 275 128-479 10-320 (361)
124 KOG1063 RNA polymerase II elon 99.9 2.2E-24 4.7E-29 200.3 26.6 299 126-479 262-650 (764)
125 KOG2106 Uncharacterized conser 99.9 2.2E-23 4.8E-28 186.8 31.8 300 121-483 144-483 (626)
126 KOG1274 WD40 repeat protein [G 99.9 2.9E-24 6.3E-29 205.6 26.9 249 173-478 10-263 (933)
127 KOG1539 WD repeat protein [Gen 99.9 5E-24 1.1E-28 201.9 27.8 302 126-476 239-647 (910)
128 KOG0640 mRNA cleavage stimulat 99.9 3.4E-25 7.4E-30 186.6 17.7 268 171-481 107-387 (430)
129 KOG0646 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 193.0 21.5 287 144-476 51-349 (476)
130 KOG0264 Nucleosome remodeling 99.9 8.4E-25 1.8E-29 193.8 19.5 219 122-354 168-405 (422)
131 KOG2106 Uncharacterized conser 99.9 1.6E-22 3.6E-27 181.2 33.5 288 123-478 192-522 (626)
132 KOG0283 WD40 repeat-containing 99.9 2.1E-24 4.5E-29 205.5 22.4 208 122-356 360-579 (712)
133 KOG0267 Microtubule severing p 99.9 4.7E-26 1E-30 212.2 10.5 257 143-469 4-260 (825)
134 KOG2048 WD40 repeat protein [G 99.9 7.7E-23 1.7E-27 189.7 31.5 229 113-354 92-320 (691)
135 KOG1063 RNA polymerase II elon 99.9 5.6E-24 1.2E-28 197.6 23.4 320 125-477 355-763 (764)
136 KOG0268 Sof1-like rRNA process 99.9 4.3E-25 9.4E-30 189.8 14.6 264 109-441 87-351 (433)
137 KOG0302 Ribosome Assembly prot 99.9 5.8E-24 1.3E-28 183.9 20.8 214 126-355 146-380 (440)
138 KOG4283 Transcription-coupled 99.9 5.4E-24 1.2E-28 178.3 19.5 234 174-483 41-282 (397)
139 KOG1009 Chromatin assembly com 99.9 2E-23 4.3E-28 182.4 23.4 327 131-482 13-377 (434)
140 KOG0301 Phospholipase A2-activ 99.9 6.1E-24 1.3E-28 197.4 21.0 239 171-477 9-249 (745)
141 KOG2048 WD40 repeat protein [G 99.9 1.8E-22 3.8E-27 187.4 29.7 283 130-478 24-320 (691)
142 KOG0267 Microtubule severing p 99.9 1.1E-25 2.5E-30 209.6 8.7 202 233-479 27-228 (825)
143 KOG0639 Transducin-like enhanc 99.9 3.5E-24 7.5E-29 191.7 17.4 250 174-483 417-669 (705)
144 KOG0302 Ribosome Assembly prot 99.9 1.5E-23 3.1E-28 181.4 20.2 263 173-475 148-436 (440)
145 KOG0270 WD40 repeat-containing 99.9 1.1E-23 2.4E-28 186.0 19.2 195 142-355 191-406 (463)
146 KOG0307 Vesicle coat complex C 99.9 1.6E-24 3.5E-29 212.5 14.7 292 135-481 10-331 (1049)
147 KOG1188 WD40 repeat protein [G 99.9 2E-23 4.3E-28 178.5 19.3 293 144-481 41-350 (376)
148 KOG1034 Transcriptional repres 99.9 1.3E-22 2.9E-27 172.5 23.8 309 125-477 32-383 (385)
149 KOG0269 WD40 repeat-containing 99.9 3.8E-24 8.3E-29 201.1 15.7 251 178-482 41-301 (839)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-21 3.9E-26 180.8 33.1 256 133-457 32-300 (300)
151 KOG0270 WD40 repeat-containing 99.9 1.3E-22 2.8E-27 179.3 23.6 302 134-480 128-452 (463)
152 KOG4227 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 176.5 22.2 300 124-477 49-387 (609)
153 KOG0322 G-protein beta subunit 99.9 3.4E-23 7.4E-28 170.9 13.4 299 119-476 2-322 (323)
154 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-22 8.1E-27 178.6 20.5 263 133-459 36-305 (673)
155 KOG1445 Tumor-specific antigen 99.9 9E-22 2E-26 181.2 20.6 125 124-264 72-200 (1012)
156 KOG0321 WD40 repeat-containing 99.9 1.3E-21 2.9E-26 180.3 21.3 309 125-477 94-445 (720)
157 KOG1538 Uncharacterized conser 99.9 2.5E-21 5.5E-26 179.2 22.0 274 133-479 14-295 (1081)
158 KOG1007 WD repeat protein TSSC 99.9 2.1E-21 4.6E-26 162.4 19.5 285 125-478 57-362 (370)
159 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-21 3.7E-26 174.4 18.5 275 151-485 10-288 (673)
160 KOG0307 Vesicle coat complex C 99.9 3.7E-22 8.1E-27 196.1 15.5 254 129-438 62-330 (1049)
161 KOG2096 WD40 repeat protein [G 99.9 3.5E-21 7.5E-26 163.3 19.0 210 229-480 81-311 (420)
162 KOG1310 WD40 repeat protein [G 99.9 9.8E-21 2.1E-25 171.7 22.9 224 123-354 42-304 (758)
163 KOG1517 Guanine nucleotide bin 99.9 1.2E-20 2.5E-25 183.4 24.6 310 129-480 1062-1384(1387)
164 KOG1273 WD40 repeat protein [G 99.9 1E-20 2.2E-25 160.3 20.0 243 179-483 26-286 (405)
165 KOG1334 WD40 repeat protein [G 99.9 2E-21 4.4E-26 173.7 15.5 321 123-484 134-473 (559)
166 KOG0290 Conserved WD40 repeat- 99.9 9.9E-20 2.1E-24 152.6 24.2 288 132-473 45-361 (364)
167 KOG4328 WD40 protein [Function 99.9 3E-20 6.4E-25 165.0 19.8 255 173-480 183-453 (498)
168 KOG1034 Transcriptional repres 99.9 2E-20 4.4E-25 159.4 17.8 252 129-435 87-383 (385)
169 COG2319 FOG: WD40 repeat [Gene 99.9 4.8E-18 1E-22 165.9 37.5 292 126-480 60-362 (466)
170 KOG0290 Conserved WD40 repeat- 99.9 1.7E-19 3.6E-24 151.3 20.8 252 176-481 44-322 (364)
171 KOG0649 WD40 repeat protein [G 99.9 1.7E-18 3.6E-23 141.7 25.8 281 132-475 11-314 (325)
172 PRK11028 6-phosphogluconolacto 99.8 1.9E-18 4.1E-23 162.1 29.6 283 146-478 5-305 (330)
173 KOG0644 Uncharacterized conser 99.8 7.5E-21 1.6E-25 180.4 13.2 293 125-497 184-482 (1113)
174 KOG0650 WD40 repeat nucleolar 99.8 1.3E-19 2.8E-24 166.1 20.2 243 170-476 394-679 (733)
175 KOG1963 WD40 repeat protein [G 99.8 2E-18 4.4E-23 165.6 28.9 295 128-479 202-540 (792)
176 KOG0303 Actin-binding protein 99.8 4.1E-19 8.9E-24 155.0 22.0 206 230-480 77-297 (472)
177 KOG2445 Nuclear pore complex c 99.8 6.9E-19 1.5E-23 148.8 21.9 224 231-479 10-258 (361)
178 KOG1587 Cytoplasmic dynein int 99.8 1.3E-18 2.7E-23 166.8 25.9 280 153-483 222-522 (555)
179 KOG1538 Uncharacterized conser 99.8 3E-19 6.5E-24 165.7 20.5 263 102-435 24-293 (1081)
180 KOG0303 Actin-binding protein 99.8 4.3E-19 9.4E-24 154.8 20.1 234 152-438 56-297 (472)
181 KOG0642 Cell-cycle nuclear pro 99.8 6.1E-20 1.3E-24 167.3 13.5 258 171-480 289-564 (577)
182 KOG1523 Actin-related protein 99.8 2.2E-18 4.7E-23 146.7 21.7 214 128-356 7-239 (361)
183 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.8E-21 155.9 36.9 291 122-478 146-443 (466)
184 KOG1587 Cytoplasmic dynein int 99.8 4.4E-18 9.6E-23 163.0 25.0 278 113-436 224-517 (555)
185 KOG1240 Protein kinase contain 99.8 6.7E-18 1.5E-22 167.0 26.6 317 126-475 1043-1431(1431)
186 KOG0771 Prolactin regulatory e 99.8 5E-18 1.1E-22 150.0 20.6 205 238-483 148-360 (398)
187 KOG1445 Tumor-specific antigen 99.8 9.5E-19 2.1E-23 161.5 16.7 243 184-480 587-847 (1012)
188 KOG0642 Cell-cycle nuclear pro 99.8 8.7E-19 1.9E-23 159.9 16.0 272 125-447 288-573 (577)
189 KOG2110 Uncharacterized conser 99.8 4.1E-16 9E-21 135.5 31.5 280 131-479 5-332 (391)
190 PRK01742 tolB translocation pr 99.8 4.6E-18 1E-22 164.3 21.8 235 152-458 183-426 (429)
191 KOG2919 Guanine nucleotide-bin 99.8 1.2E-17 2.6E-22 142.3 21.3 255 179-481 52-331 (406)
192 KOG4227 WD40 repeat protein [G 99.8 3.3E-18 7.1E-23 149.2 18.1 263 173-482 53-327 (609)
193 KOG1007 WD repeat protein TSSC 99.8 4.7E-18 1E-22 142.5 17.9 218 120-354 111-362 (370)
194 KOG4497 Uncharacterized conser 99.8 1.4E-17 3E-22 142.2 20.3 331 136-495 13-409 (447)
195 KOG0649 WD40 repeat protein [G 99.8 2E-17 4.4E-22 135.4 19.2 253 178-480 12-277 (325)
196 PRK11028 6-phosphogluconolacto 99.8 4E-16 8.7E-21 146.4 29.9 252 131-435 34-304 (330)
197 KOG1009 Chromatin assembly com 99.8 5.8E-17 1.3E-21 142.3 21.7 273 177-479 14-331 (434)
198 KOG0644 Uncharacterized conser 99.8 8.1E-19 1.8E-23 166.8 9.1 244 172-482 186-431 (1113)
199 KOG2321 WD40 repeat protein [G 99.8 3.4E-16 7.4E-21 143.3 24.8 293 129-483 49-349 (703)
200 KOG1524 WD40 repeat-containing 99.8 5.4E-17 1.2E-21 147.3 19.0 265 129-474 12-283 (737)
201 KOG2110 Uncharacterized conser 99.8 7.3E-15 1.6E-19 127.9 31.2 285 132-446 47-343 (391)
202 KOG1354 Serine/threonine prote 99.8 2.6E-16 5.7E-21 135.3 22.0 308 131-474 25-431 (433)
203 KOG0771 Prolactin regulatory e 99.8 1.7E-17 3.8E-22 146.6 15.0 197 135-354 148-355 (398)
204 KOG1524 WD40 repeat-containing 99.8 4.7E-17 1E-21 147.6 17.2 208 144-432 76-283 (737)
205 PRK03629 tolB translocation pr 99.8 1.4E-15 3.1E-20 146.7 28.7 235 153-458 179-428 (429)
206 KOG1963 WD40 repeat protein [G 99.7 3.9E-15 8.4E-20 143.4 30.2 309 127-482 157-492 (792)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 4.2E-16 9.1E-21 141.7 22.2 278 133-483 125-458 (636)
208 KOG1310 WD40 repeat protein [G 99.7 3.1E-17 6.7E-22 149.2 14.8 247 171-443 45-311 (758)
209 KOG1272 WD40-repeat-containing 99.7 1.2E-17 2.6E-22 149.0 11.4 272 131-474 129-406 (545)
210 KOG1523 Actin-related protein 99.7 1.9E-16 4.1E-21 135.0 17.8 246 177-458 11-260 (361)
211 PF02239 Cytochrom_D1: Cytochr 99.7 2.5E-14 5.3E-19 133.8 32.1 309 144-482 6-352 (369)
212 PRK01742 tolB translocation pr 99.7 2.7E-15 5.9E-20 145.1 24.4 214 197-477 183-401 (429)
213 KOG2139 WD40 repeat protein [G 99.7 1.7E-14 3.7E-19 125.2 26.0 318 131-478 98-432 (445)
214 KOG1517 Guanine nucleotide bin 99.7 2.5E-15 5.4E-20 147.0 22.6 251 178-482 1066-1338(1387)
215 KOG1188 WD40 repeat protein [G 99.7 1.4E-15 3E-20 130.9 17.0 195 247-482 41-247 (376)
216 PRK04922 tolB translocation pr 99.7 2.1E-14 4.6E-19 139.2 26.4 234 153-457 184-432 (433)
217 PRK02889 tolB translocation pr 99.7 1.2E-14 2.7E-19 140.3 24.2 237 153-458 176-425 (427)
218 PRK05137 tolB translocation pr 99.7 5.5E-14 1.2E-18 136.5 28.8 234 153-458 182-433 (435)
219 KOG2139 WD40 repeat protein [G 99.7 5.3E-14 1.2E-18 122.1 24.9 205 130-354 139-384 (445)
220 KOG2111 Uncharacterized conser 99.7 1.3E-12 2.8E-17 111.9 31.2 282 133-479 7-324 (346)
221 PRK03629 tolB translocation pr 99.7 1.1E-13 2.5E-18 133.5 27.0 202 124-354 191-407 (429)
222 KOG2315 Predicted translation 99.6 8.6E-13 1.9E-17 121.3 30.5 293 131-480 34-393 (566)
223 KOG1240 Protein kinase contain 99.6 6.9E-14 1.5E-18 139.2 24.0 261 172-482 1044-1339(1431)
224 KOG2394 WD40 protein DMR-N9 [G 99.6 4.2E-15 9E-20 135.3 14.3 187 140-332 182-383 (636)
225 KOG4497 Uncharacterized conser 99.6 3E-13 6.6E-18 116.0 24.6 277 131-471 48-426 (447)
226 KOG1334 WD40 repeat protein [G 99.6 2.9E-15 6.3E-20 134.7 13.0 265 172-480 138-427 (559)
227 KOG1272 WD40-repeat-containing 99.6 8E-16 1.7E-20 137.4 8.8 230 178-475 131-360 (545)
228 PRK04922 tolB translocation pr 99.6 3.7E-13 8E-18 130.6 27.8 215 198-479 184-413 (433)
229 KOG3881 Uncharacterized conser 99.6 8.8E-14 1.9E-18 122.1 20.7 258 177-490 56-333 (412)
230 KOG0280 Uncharacterized conser 99.6 2.5E-13 5.4E-18 114.9 22.0 276 152-479 45-335 (339)
231 PRK05137 tolB translocation pr 99.6 4.1E-13 8.9E-18 130.5 26.2 206 120-354 190-413 (435)
232 KOG0322 G-protein beta subunit 99.6 1.2E-13 2.6E-18 115.0 16.8 253 122-434 46-322 (323)
233 PRK02889 tolB translocation pr 99.6 5.5E-13 1.2E-17 128.9 24.2 196 236-477 197-403 (427)
234 PF02239 Cytochrom_D1: Cytochr 99.6 9.2E-12 2E-16 116.6 31.0 258 133-444 38-356 (369)
235 COG5354 Uncharacterized protei 99.6 5.5E-12 1.2E-16 114.7 27.7 299 126-481 27-399 (561)
236 TIGR02800 propeller_TolB tol-p 99.6 2.5E-12 5.5E-17 125.1 28.0 233 153-456 170-417 (417)
237 KOG2321 WD40 repeat protein [G 99.6 2.3E-13 5E-18 125.1 18.8 262 174-489 49-314 (703)
238 PRK04792 tolB translocation pr 99.6 1.5E-12 3.1E-17 126.3 25.4 234 154-458 199-447 (448)
239 KOG3881 Uncharacterized conser 99.6 2.8E-13 6E-18 119.0 18.2 215 127-356 101-323 (412)
240 KOG2111 Uncharacterized conser 99.6 7.1E-12 1.5E-16 107.4 25.9 178 153-356 75-259 (346)
241 PRK00178 tolB translocation pr 99.6 4.5E-12 9.7E-17 123.5 28.5 234 154-458 180-428 (430)
242 PF08662 eIF2A: Eukaryotic tra 99.5 7.5E-13 1.6E-17 112.5 18.6 151 280-479 9-181 (194)
243 PF08662 eIF2A: Eukaryotic tra 99.5 1.3E-12 2.7E-17 111.1 19.5 150 135-307 9-179 (194)
244 KOG0974 WD-repeat protein WDR6 99.5 7.7E-13 1.7E-17 130.0 19.3 199 236-482 89-293 (967)
245 KOG0974 WD-repeat protein WDR6 99.5 2.8E-12 6E-17 126.2 23.2 201 131-355 87-290 (967)
246 PF10282 Lactonase: Lactonase, 99.5 3.7E-11 8.1E-16 112.8 30.3 286 146-478 2-323 (345)
247 KOG2314 Translation initiation 99.5 4.6E-12 1E-16 116.2 22.0 285 132-479 211-575 (698)
248 KOG1409 Uncharacterized conser 99.5 5.4E-13 1.2E-17 115.3 14.4 207 127-356 64-273 (404)
249 PF10282 Lactonase: Lactonase, 99.5 3.4E-10 7.3E-15 106.4 34.4 283 133-455 38-345 (345)
250 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.4E-16 119.5 26.2 193 236-478 191-398 (417)
251 KOG4547 WD40 repeat-containing 99.5 1.2E-11 2.5E-16 114.8 22.0 194 140-354 2-221 (541)
252 KOG1354 Serine/threonine prote 99.5 1.9E-12 4E-17 112.0 15.7 276 178-481 27-363 (433)
253 PRK01029 tolB translocation pr 99.5 5.3E-11 1.1E-15 114.6 26.8 242 153-459 165-426 (428)
254 TIGR02658 TTQ_MADH_Hv methylam 99.5 8.5E-10 1.8E-14 101.0 32.8 278 153-484 27-337 (352)
255 KOG4547 WD40 repeat-containing 99.5 1.4E-11 3E-16 114.3 20.5 150 185-354 2-173 (541)
256 PRK04792 tolB translocation pr 99.4 8.5E-11 1.8E-15 114.1 26.1 194 236-479 219-427 (448)
257 PRK00178 tolB translocation pr 99.4 1.2E-10 2.7E-15 113.4 27.0 195 236-480 200-409 (430)
258 KOG1064 RAVE (regulator of V-A 99.4 1.8E-12 3.9E-17 133.7 13.6 221 177-470 2209-2439(2439)
259 KOG2041 WD40 repeat protein [G 99.4 5.1E-11 1.1E-15 112.7 22.0 287 131-477 14-337 (1189)
260 KOG0309 Conserved WD40 repeat- 99.4 2.5E-12 5.4E-17 121.8 12.4 302 131-479 24-341 (1081)
261 KOG0280 Uncharacterized conser 99.4 5.4E-11 1.2E-15 101.0 19.0 207 131-355 69-286 (339)
262 COG2706 3-carboxymuconate cycl 99.4 1.7E-09 3.6E-14 95.2 28.7 279 152-480 15-324 (346)
263 COG5170 CDC55 Serine/threonine 99.4 2.3E-11 4.9E-16 104.0 16.1 269 131-435 26-367 (460)
264 PRK01029 tolB translocation pr 99.4 1.8E-10 3.8E-15 111.0 24.4 209 124-355 177-405 (428)
265 KOG1064 RAVE (regulator of V-A 99.4 6.6E-12 1.4E-16 129.7 13.0 193 128-356 2205-2401(2439)
266 COG4946 Uncharacterized protei 99.3 3.3E-09 7.1E-14 96.1 27.8 175 139-342 327-507 (668)
267 PF04762 IKI3: IKI3 family; I 99.3 6.4E-09 1.4E-13 108.3 34.2 328 129-480 73-459 (928)
268 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.1E-08 2.3E-13 93.8 31.4 245 139-444 53-339 (352)
269 TIGR03300 assembly_YfgL outer 99.3 3.8E-09 8.2E-14 101.2 29.4 265 142-482 64-343 (377)
270 COG2706 3-carboxymuconate cycl 99.3 1.8E-08 4E-13 88.8 30.6 287 128-456 36-345 (346)
271 KOG2315 Predicted translation 99.3 2.1E-09 4.5E-14 99.5 23.4 253 135-458 129-411 (566)
272 TIGR03300 assembly_YfgL outer 99.3 1.3E-08 2.7E-13 97.6 28.9 261 142-474 104-376 (377)
273 KOG1409 Uncharacterized conser 99.2 5.9E-10 1.3E-14 96.8 16.9 251 172-483 20-276 (404)
274 PLN02919 haloacid dehalogenase 99.2 9.6E-09 2.1E-13 109.1 29.7 269 135-439 571-892 (1057)
275 COG5354 Uncharacterized protei 99.2 2.1E-08 4.7E-13 91.8 27.6 266 131-469 71-421 (561)
276 PLN02919 haloacid dehalogenase 99.2 1.5E-08 3.2E-13 107.8 29.5 272 180-481 571-892 (1057)
277 KOG2041 WD40 repeat protein [G 99.2 3.3E-10 7.1E-15 107.4 14.7 259 177-469 15-280 (1189)
278 COG4946 Uncharacterized protei 99.2 1.7E-08 3.7E-13 91.6 24.4 191 137-354 272-478 (668)
279 PRK04043 tolB translocation pr 99.2 5.3E-08 1.2E-12 93.3 29.0 209 178-455 189-419 (419)
280 PF15492 Nbas_N: Neuroblastoma 99.2 5.8E-08 1.3E-12 83.1 24.3 149 137-297 3-167 (282)
281 KOG3914 WD repeat protein WDR4 99.2 5.9E-10 1.3E-14 98.9 12.6 163 134-319 65-231 (390)
282 KOG1912 WD40 repeat protein [G 99.1 6.2E-08 1.3E-12 93.2 25.4 216 115-354 39-305 (1062)
283 PF15492 Nbas_N: Neuroblastoma 99.1 1.5E-07 3.2E-12 80.7 24.9 237 182-481 3-263 (282)
284 PF04762 IKI3: IKI3 family; I 99.1 3.5E-07 7.6E-12 95.6 32.8 283 132-475 22-377 (928)
285 KOG4190 Uncharacterized conser 99.1 6.1E-10 1.3E-14 102.6 11.0 288 124-473 728-1032(1034)
286 PRK04043 tolB translocation pr 99.1 1.5E-07 3.3E-12 90.2 27.9 194 236-481 189-404 (419)
287 KOG4532 WD40-like repeat conta 99.1 4.1E-08 8.9E-13 82.7 20.3 194 144-356 85-285 (344)
288 COG5170 CDC55 Serine/threonine 99.1 3.7E-09 8.1E-14 90.7 13.9 272 177-477 27-367 (460)
289 KOG4532 WD40-like repeat conta 99.1 1.5E-08 3.2E-13 85.3 16.8 195 245-482 83-287 (344)
290 KOG2695 WD40 repeat protein [G 99.1 7.6E-10 1.6E-14 96.2 9.3 176 241-456 218-401 (425)
291 KOG3914 WD repeat protein WDR4 99.0 4.3E-09 9.3E-14 93.6 13.3 162 178-360 64-230 (390)
292 KOG4714 Nucleoporin [Nuclear s 99.0 6.7E-09 1.5E-13 86.9 13.3 202 134-354 39-255 (319)
293 KOG2314 Translation initiation 99.0 1.6E-07 3.5E-12 87.1 23.3 290 155-478 192-526 (698)
294 PF08450 SGL: SMP-30/Gluconola 99.0 3.6E-06 7.9E-11 75.3 30.8 223 181-465 4-243 (246)
295 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.5E-14 98.6 10.3 246 170-476 729-987 (1034)
296 KOG1912 WD40 repeat protein [G 99.0 1.1E-07 2.3E-12 91.7 20.8 271 178-478 17-305 (1062)
297 PF13360 PQQ_2: PQQ-like domai 99.0 2.5E-06 5.4E-11 76.1 28.4 223 151-442 1-237 (238)
298 KOG2695 WD40 repeat protein [G 99.0 5E-09 1.1E-13 91.2 10.0 150 192-361 228-384 (425)
299 KOG1832 HIV-1 Vpr-binding prot 98.9 8.4E-10 1.8E-14 107.1 4.7 205 111-357 1084-1295(1516)
300 KOG0309 Conserved WD40 repeat- 98.9 9.2E-09 2E-13 98.2 11.3 264 131-436 67-340 (1081)
301 PRK11138 outer membrane biogen 98.9 2.1E-06 4.6E-11 82.6 27.5 267 143-481 69-357 (394)
302 KOG4714 Nucleoporin [Nuclear s 98.9 1.6E-08 3.4E-13 84.8 10.7 175 115-307 73-254 (319)
303 KOG1275 PAB-dependent poly(A) 98.9 8.2E-08 1.8E-12 94.1 16.2 182 245-475 146-340 (1118)
304 PRK11138 outer membrane biogen 98.9 3.3E-06 7.1E-11 81.3 27.0 265 142-476 119-393 (394)
305 PF08450 SGL: SMP-30/Gluconola 98.9 1.6E-05 3.5E-10 71.1 29.6 197 136-354 4-214 (246)
306 KOG0882 Cyclophilin-related pe 98.8 9E-08 2E-12 86.5 14.1 285 130-443 8-313 (558)
307 PF13360 PQQ_2: PQQ-like domai 98.8 1.9E-06 4.1E-11 76.8 23.0 224 197-481 2-234 (238)
308 PF00400 WD40: WD domain, G-be 98.8 9.2E-09 2E-13 62.2 5.5 39 437-475 1-39 (39)
309 KOG1920 IkappaB kinase complex 98.8 8.6E-06 1.9E-10 83.0 27.7 218 130-355 67-324 (1265)
310 PF07433 DUF1513: Protein of u 98.8 8.3E-06 1.8E-10 72.4 24.7 234 179-471 7-279 (305)
311 KOG3621 WD40 repeat-containing 98.8 2E-06 4.4E-11 82.5 21.6 153 130-296 32-188 (726)
312 KOG1645 RING-finger-containing 98.7 1.4E-06 3E-11 77.9 17.0 237 232-477 191-461 (463)
313 KOG1920 IkappaB kinase complex 98.7 4E-06 8.6E-11 85.4 22.1 236 177-478 69-323 (1265)
314 PF14583 Pectate_lyase22: Olig 98.7 4.6E-05 9.9E-10 69.9 26.7 195 137-354 41-273 (386)
315 KOG4649 PQQ (pyrrolo-quinoline 98.6 7.6E-05 1.6E-09 63.3 24.6 141 143-305 23-163 (354)
316 PF06433 Me-amine-dh_H: Methyl 98.6 3.3E-05 7.2E-10 69.5 23.4 279 153-482 17-325 (342)
317 KOG0882 Cyclophilin-related pe 98.6 6.6E-07 1.4E-11 81.1 12.5 265 175-482 8-310 (558)
318 PF07433 DUF1513: Protein of u 98.6 2.1E-05 4.6E-10 69.8 21.4 196 122-348 47-280 (305)
319 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3.1E-12 56.9 5.6 38 314-351 2-39 (39)
320 KOG1275 PAB-dependent poly(A) 98.6 2.1E-06 4.6E-11 84.5 15.4 187 142-352 146-341 (1118)
321 KOG2066 Vacuolar assembly/sort 98.6 6E-06 1.3E-10 80.5 18.3 140 142-307 82-233 (846)
322 KOG2114 Vacuolar assembly/sort 98.5 4E-05 8.6E-10 75.5 22.7 206 137-354 29-244 (933)
323 KOG1832 HIV-1 Vpr-binding prot 98.5 1.1E-07 2.4E-12 93.0 5.0 118 232-357 1099-1218(1516)
324 cd00216 PQQ_DH Dehydrogenases 98.5 0.00036 7.9E-09 69.0 29.2 278 143-484 61-431 (488)
325 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.0001 2.2E-09 69.7 24.4 107 140-253 1-119 (353)
326 PF11768 DUF3312: Protein of u 98.5 3.6E-06 7.8E-11 79.7 14.1 77 129-210 257-333 (545)
327 PF06977 SdiA-regulated: SdiA- 98.5 9.1E-05 2E-09 64.9 21.6 211 124-349 14-246 (248)
328 PRK02888 nitrous-oxide reducta 98.4 4.9E-05 1.1E-09 74.0 21.0 257 146-436 69-405 (635)
329 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00031 6.6E-09 59.8 22.5 142 188-352 23-164 (354)
330 KOG3617 WD40 and TPR repeat-co 98.4 1.5E-05 3.2E-10 78.2 16.9 110 135-265 19-132 (1416)
331 PF06433 Me-amine-dh_H: Methyl 98.4 0.00089 1.9E-08 60.5 26.6 153 135-307 39-213 (342)
332 KOG2066 Vacuolar assembly/sort 98.4 4.5E-05 9.9E-10 74.6 18.8 147 178-357 41-191 (846)
333 PF11768 DUF3312: Protein of u 98.4 1.7E-05 3.8E-10 75.2 15.5 112 237-355 208-331 (545)
334 COG0823 TolB Periplasmic compo 98.3 0.00016 3.5E-09 69.1 21.5 183 236-466 194-388 (425)
335 KOG2114 Vacuolar assembly/sort 98.3 8.5E-05 1.9E-09 73.3 19.5 203 241-482 30-248 (933)
336 KOG1645 RING-finger-containing 98.3 9E-05 1.9E-09 66.7 17.5 82 124-209 186-269 (463)
337 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0022 4.8E-08 61.6 27.9 194 135-354 32-247 (410)
338 PF08596 Lgl_C: Lethal giant l 98.2 0.00095 2.1E-08 63.3 24.5 252 178-467 3-326 (395)
339 KOG1008 Uncharacterized conser 98.2 4.5E-07 9.7E-12 85.8 2.1 205 236-482 58-280 (783)
340 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00037 8E-09 66.0 21.5 207 131-343 42-301 (353)
341 KOG1008 Uncharacterized conser 98.2 4E-07 8.6E-12 86.2 1.3 205 133-356 58-278 (783)
342 PF04053 Coatomer_WDAD: Coatom 98.2 0.00072 1.6E-08 65.0 22.7 183 129-349 30-219 (443)
343 cd00216 PQQ_DH Dehydrogenases 98.2 0.0052 1.1E-07 60.9 29.2 259 144-445 111-434 (488)
344 COG0823 TolB Periplasmic compo 98.1 0.00053 1.1E-08 65.6 20.8 154 177-354 193-359 (425)
345 PF02897 Peptidase_S9_N: Proly 98.1 0.0097 2.1E-07 57.9 30.8 202 133-353 125-357 (414)
346 PF08596 Lgl_C: Lethal giant l 98.1 0.0018 4E-08 61.4 23.4 212 133-357 3-294 (395)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.014 3E-07 58.2 29.5 195 143-357 69-337 (527)
348 PF04053 Coatomer_WDAD: Coatom 98.1 0.002 4.4E-08 61.9 22.8 141 178-354 34-174 (443)
349 KOG3621 WD40 repeat-containing 98.0 0.00014 3E-09 70.3 14.1 149 176-341 33-187 (726)
350 PF06977 SdiA-regulated: SdiA- 98.0 0.0068 1.5E-07 53.3 23.5 203 236-474 23-247 (248)
351 PF00780 CNH: CNH domain; Int 98.0 0.0034 7.5E-08 57.2 22.4 148 186-357 5-169 (275)
352 COG3391 Uncharacterized conser 97.9 0.021 4.5E-07 54.6 28.9 202 236-480 75-286 (381)
353 KOG3617 WD40 and TPR repeat-co 97.9 0.00024 5.1E-09 70.1 13.6 110 179-307 18-131 (1416)
354 PF03178 CPSF_A: CPSF A subuni 97.9 0.0069 1.5E-07 56.6 23.0 216 199-474 3-262 (321)
355 PF03178 CPSF_A: CPSF A subuni 97.9 0.014 3E-07 54.5 24.9 178 153-354 2-203 (321)
356 PRK13616 lipoprotein LpqB; Pro 97.8 0.0026 5.6E-08 63.7 19.7 195 132-348 350-563 (591)
357 smart00320 WD40 WD40 repeats. 97.8 8.3E-05 1.8E-09 44.0 5.4 39 437-475 2-40 (40)
358 PRK02888 nitrous-oxide reducta 97.8 0.0034 7.4E-08 61.6 18.6 189 137-354 198-405 (635)
359 COG3391 Uncharacterized conser 97.7 0.049 1.1E-06 52.0 29.2 261 133-458 32-309 (381)
360 COG3204 Uncharacterized protei 97.7 0.015 3.2E-07 51.1 19.6 175 125-307 79-263 (316)
361 PF14583 Pectate_lyase22: Olig 97.6 0.051 1.1E-06 50.4 23.5 250 159-468 16-303 (386)
362 KOG2444 WD40 repeat protein [G 97.6 9.9E-05 2.1E-09 61.7 5.4 151 291-485 32-185 (238)
363 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.065 1.4E-06 50.9 24.9 72 136-207 6-98 (415)
364 COG3386 Gluconolactonase [Carb 97.6 0.053 1.1E-06 49.6 26.0 225 183-468 31-277 (307)
365 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.011 2.3E-07 44.1 15.1 67 279-353 2-71 (111)
366 COG3490 Uncharacterized protei 97.6 0.0058 1.3E-07 53.1 15.6 193 138-352 120-347 (366)
367 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.011 2.3E-07 44.1 15.0 100 237-348 2-109 (111)
368 PF04841 Vps16_N: Vps16, N-ter 97.6 0.085 1.8E-06 50.9 26.3 192 257-460 62-272 (410)
369 KOG4640 Anaphase-promoting com 97.5 0.00072 1.6E-08 64.8 9.8 84 126-213 15-99 (665)
370 KOG1897 Damage-specific DNA bi 97.4 0.18 4E-06 51.7 28.5 63 416-480 839-901 (1096)
371 PF08553 VID27: VID27 cytoplas 97.4 0.018 3.9E-07 58.9 19.3 143 189-353 494-647 (794)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.16 3.5E-06 50.7 29.1 160 144-307 121-333 (527)
373 PF07995 GSDH: Glucose / Sorbo 97.4 0.11 2.4E-06 48.5 26.9 57 416-472 270-330 (331)
374 KOG2395 Protein involved in va 97.4 0.0092 2E-07 56.4 15.3 144 187-354 344-501 (644)
375 PF02897 Peptidase_S9_N: Proly 97.4 0.16 3.4E-06 49.4 30.5 248 178-480 125-407 (414)
376 smart00320 WD40 WD40 repeats. 97.4 0.00061 1.3E-08 40.0 5.3 38 314-351 3-40 (40)
377 KOG4441 Proteins containing BT 97.3 0.045 9.8E-07 55.0 20.9 191 140-354 282-500 (571)
378 PF08553 VID27: VID27 cytoplas 97.3 0.0049 1.1E-07 62.8 14.0 150 287-477 491-647 (794)
379 PHA02713 hypothetical protein; 97.3 0.026 5.7E-07 56.8 19.3 93 187-298 303-408 (557)
380 KOG4441 Proteins containing BT 97.3 0.04 8.8E-07 55.4 20.2 230 187-479 284-548 (571)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.11 2.4E-06 49.4 21.4 71 410-482 312-403 (415)
382 KOG2395 Protein involved in va 97.3 0.0024 5.1E-08 60.1 10.0 146 291-477 348-500 (644)
383 PHA02713 hypothetical protein; 97.2 0.028 6.2E-07 56.5 18.5 63 416-480 463-536 (557)
384 COG3386 Gluconolactonase [Carb 97.2 0.17 3.7E-06 46.3 23.2 195 138-353 31-243 (307)
385 KOG4640 Anaphase-promoting com 97.2 0.0026 5.6E-08 61.1 9.5 92 236-333 22-115 (665)
386 PF10647 Gmad1: Lipoprotein Lp 97.2 0.15 3.3E-06 45.6 20.4 147 133-299 25-187 (253)
387 COG3204 Uncharacterized protei 97.1 0.16 3.6E-06 44.8 20.0 119 235-354 86-211 (316)
388 KOG1897 Damage-specific DNA bi 97.1 0.46 9.9E-06 49.0 27.1 186 146-354 687-899 (1096)
389 PF14870 PSII_BNR: Photosynthe 97.1 0.22 4.8E-06 45.3 29.5 279 131-474 16-301 (302)
390 KOG2079 Vacuolar assembly/sort 97.1 0.025 5.4E-07 58.2 15.5 103 187-306 98-202 (1206)
391 KOG2444 WD40 repeat protein [G 97.0 0.0023 4.9E-08 53.8 6.9 108 245-356 69-180 (238)
392 KOG4499 Ca2+-binding protein R 97.0 0.043 9.3E-07 46.5 14.2 154 131-296 108-273 (310)
393 KOG2079 Vacuolar assembly/sort 97.0 0.0062 1.3E-07 62.3 10.8 102 142-258 98-199 (1206)
394 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0033 7.1E-08 38.9 5.5 31 131-161 11-41 (47)
395 PF05694 SBP56: 56kDa selenium 96.8 0.44 9.5E-06 45.0 20.6 203 142-357 86-346 (461)
396 KOG4499 Ca2+-binding protein R 96.8 0.25 5.4E-06 42.0 17.3 43 415-457 221-263 (310)
397 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0062 1.4E-07 37.7 5.8 32 235-267 12-43 (47)
398 PF05096 Glu_cyclase_2: Glutam 96.8 0.34 7.5E-06 42.7 24.2 185 237-466 47-249 (264)
399 PF00780 CNH: CNH domain; Int 96.7 0.47 1E-05 43.2 20.7 153 141-307 5-165 (275)
400 PF14727 PHTB1_N: PTHB1 N-term 96.7 0.64 1.4E-05 44.5 30.8 148 143-307 37-204 (418)
401 PRK13616 lipoprotein LpqB; Pro 96.6 0.05 1.1E-06 54.7 13.9 150 178-353 351-525 (591)
402 TIGR03074 PQQ_membr_DH membran 96.5 0.94 2E-05 47.2 22.8 228 246-484 194-484 (764)
403 PF15390 DUF4613: Domain of un 96.5 0.27 5.8E-06 47.7 17.2 115 236-354 58-187 (671)
404 PF10168 Nup88: Nuclear pore c 96.4 1.3 2.9E-05 45.7 22.8 91 171-267 79-182 (717)
405 PHA03098 kelch-like protein; P 96.4 0.2 4.3E-06 50.7 17.1 189 141-354 293-512 (534)
406 PF14870 PSII_BNR: Photosynthe 96.4 0.75 1.6E-05 42.0 21.2 192 133-348 63-256 (302)
407 KOG2377 Uncharacterized conser 96.4 0.9 2E-05 42.8 19.7 140 137-292 28-168 (657)
408 PRK10115 protease 2; Provision 96.4 1.6 3.5E-05 45.4 32.1 196 132-352 127-343 (686)
409 COG3490 Uncharacterized protei 96.2 0.85 1.8E-05 40.2 20.8 102 237-342 70-180 (366)
410 PF14727 PHTB1_N: PTHB1 N-term 96.1 0.91 2E-05 43.5 18.3 164 287-477 35-204 (418)
411 PRK10115 protease 2; Provision 96.0 2.4 5.3E-05 44.1 31.9 113 177-307 127-255 (686)
412 PF15390 DUF4613: Domain of un 95.9 0.72 1.6E-05 44.9 16.5 160 127-307 15-186 (671)
413 PHA03098 kelch-like protein; P 95.9 0.48 1E-05 47.9 16.8 103 245-354 294-415 (534)
414 PRK13684 Ycf48-like protein; P 95.7 1.5 3.1E-05 41.2 17.9 155 131-306 172-330 (334)
415 PF10647 Gmad1: Lipoprotein Lp 95.7 1.5 3.3E-05 39.2 18.4 148 178-345 25-187 (253)
416 PF05096 Glu_cyclase_2: Glutam 95.6 1.5 3.2E-05 38.8 23.2 183 131-342 44-249 (264)
417 PHA02790 Kelch-like protein; P 95.5 1.3 2.8E-05 44.0 17.7 186 141-354 270-471 (480)
418 KOG2280 Vacuolar assembly/sort 95.4 0.41 8.9E-06 47.8 13.4 180 153-355 64-248 (829)
419 PF10168 Nup88: Nuclear pore c 95.4 2.2 4.9E-05 44.1 19.3 77 131-208 84-181 (717)
420 COG5276 Uncharacterized conser 95.4 1.9 4E-05 38.4 25.9 156 178-358 88-246 (370)
421 COG3823 Glutamine cyclotransfe 95.1 1.8 3.9E-05 36.4 15.4 178 245-465 55-247 (262)
422 PF12234 Rav1p_C: RAVE protein 95.0 0.6 1.3E-05 46.9 13.4 122 134-264 32-156 (631)
423 TIGR02604 Piru_Ver_Nterm putat 94.9 1.7 3.8E-05 41.4 16.1 155 132-295 14-201 (367)
424 KOG3630 Nuclear pore complex, 94.9 0.49 1.1E-05 49.6 12.6 150 178-341 102-261 (1405)
425 PF10313 DUF2415: Uncharacteri 94.9 0.17 3.7E-06 30.3 5.7 32 132-163 1-35 (43)
426 PHA02790 Kelch-like protein; P 94.9 2.5 5.4E-05 42.0 17.6 103 245-354 271-385 (480)
427 PF08728 CRT10: CRT10; InterP 94.8 2.1 4.5E-05 43.7 16.5 163 143-306 49-245 (717)
428 PF12234 Rav1p_C: RAVE protein 94.7 1.8 3.9E-05 43.7 15.9 111 179-307 32-156 (631)
429 KOG2377 Uncharacterized conser 94.5 0.78 1.7E-05 43.2 11.9 102 235-342 67-172 (657)
430 TIGR03074 PQQ_membr_DH membran 94.5 7.2 0.00016 40.9 24.1 124 143-273 194-353 (764)
431 PF10313 DUF2415: Uncharacteri 94.4 0.14 3.1E-06 30.7 4.6 31 277-307 1-33 (43)
432 COG5167 VID27 Protein involved 94.4 1 2.2E-05 43.0 12.5 144 187-355 478-634 (776)
433 PF13449 Phytase-like: Esteras 94.3 4.6 9.9E-05 37.8 17.7 120 131-254 19-166 (326)
434 PRK14131 N-acetylneuraminic ac 94.3 5.2 0.00011 38.3 19.8 70 142-213 38-121 (376)
435 KOG1983 Tomosyn and related SN 94.1 5.4 0.00012 43.2 18.9 32 131-162 35-66 (993)
436 PF05694 SBP56: 56kDa selenium 94.1 5.6 0.00012 37.9 20.7 190 136-341 134-391 (461)
437 KOG3630 Nuclear pore complex, 94.0 0.43 9.3E-06 50.0 9.9 115 236-354 102-229 (1405)
438 KOG1900 Nuclear pore complex, 93.9 3.5 7.6E-05 44.4 16.4 35 321-355 240-274 (1311)
439 KOG2280 Vacuolar assembly/sort 93.4 10 0.00022 38.6 17.9 192 256-459 64-271 (829)
440 KOG1916 Nuclear protein, conta 93.3 0.071 1.5E-06 54.0 3.3 114 233-353 131-265 (1283)
441 PF08728 CRT10: CRT10; InterP 93.0 10 0.00022 38.9 17.6 115 236-352 102-245 (717)
442 PF07569 Hira: TUP1-like enhan 92.5 1.4 3E-05 38.4 9.7 81 184-268 18-99 (219)
443 smart00036 CNH Domain found in 92.4 8.8 0.00019 35.4 24.6 101 187-306 12-130 (302)
444 PF07569 Hira: TUP1-like enhan 92.4 1 2.3E-05 39.1 8.9 74 138-212 17-101 (219)
445 TIGR03547 muta_rot_YjhT mutatr 92.4 10 0.00022 35.9 18.7 27 187-213 63-100 (346)
446 COG5167 VID27 Protein involved 92.2 2.4 5.3E-05 40.6 11.3 150 287-479 477-634 (776)
447 PF14781 BBS2_N: Ciliary BBSom 92.0 4.8 0.0001 31.4 12.8 122 329-480 4-128 (136)
448 PLN02193 nitrile-specifier pro 91.9 14 0.00031 36.6 18.2 105 187-307 228-351 (470)
449 PRK14131 N-acetylneuraminic ac 91.9 12 0.00027 35.8 17.0 53 245-298 84-149 (376)
450 COG3823 Glutamine cyclotransfe 91.8 7.2 0.00016 33.0 12.3 52 245-296 185-248 (262)
451 PF14761 HPS3_N: Hermansky-Pud 91.8 5.9 0.00013 33.8 12.2 102 189-307 29-163 (215)
452 KOG1983 Tomosyn and related SN 91.8 3.8 8.2E-05 44.4 13.8 32 236-267 37-68 (993)
453 KOG2247 WD40 repeat-containing 91.7 0.026 5.7E-07 53.0 -1.8 141 135-298 38-179 (615)
454 TIGR03548 mutarot_permut cycli 91.7 11 0.00025 35.1 16.6 137 142-298 72-233 (323)
455 TIGR02604 Piru_Ver_Nterm putat 91.6 13 0.00028 35.5 25.7 143 178-343 15-203 (367)
456 TIGR03118 PEPCTERM_chp_1 conse 91.5 10 0.00022 34.2 23.0 223 236-481 24-283 (336)
457 TIGR03118 PEPCTERM_chp_1 conse 91.3 11 0.00024 34.1 23.7 231 178-457 24-307 (336)
458 PF12768 Rax2: Cortical protei 90.8 11 0.00023 34.2 13.7 94 197-307 15-123 (281)
459 KOG4460 Nuclear pore complex, 90.8 6.4 0.00014 38.1 12.5 90 175-269 102-203 (741)
460 PLN02193 nitrile-specifier pro 90.5 19 0.00042 35.6 17.2 148 142-307 228-410 (470)
461 TIGR02276 beta_rpt_yvtn 40-res 90.5 1.7 3.6E-05 25.9 6.1 40 415-455 1-41 (42)
462 PF12657 TFIIIC_delta: Transcr 90.5 2 4.4E-05 35.8 8.5 31 324-354 86-122 (173)
463 PLN02153 epithiospecifier prot 90.5 16 0.00034 34.5 19.2 114 142-269 32-172 (341)
464 PRK13684 Ycf48-like protein; P 90.5 15 0.00033 34.4 28.6 278 131-476 45-330 (334)
465 PF14781 BBS2_N: Ciliary BBSom 90.4 7.1 0.00015 30.5 14.4 118 135-271 2-132 (136)
466 KOG2247 WD40 repeat-containing 90.0 0.038 8.1E-07 52.0 -2.5 141 179-344 37-179 (615)
467 KOG4659 Uncharacterized conser 89.8 35 0.00075 37.4 20.1 301 128-472 344-686 (1899)
468 PF10214 Rrn6: RNA polymerase 89.5 32 0.00069 36.6 23.8 173 129-307 77-276 (765)
469 PF05935 Arylsulfotrans: Aryls 89.4 24 0.00053 35.0 21.1 135 137-275 153-312 (477)
470 PLN02153 epithiospecifier prot 89.2 20 0.00043 33.8 21.3 25 245-269 85-114 (341)
471 KOG1900 Nuclear pore complex, 89.2 3.8 8.1E-05 44.2 10.7 38 445-482 240-277 (1311)
472 COG4257 Vgb Streptogramin lyas 89.1 16 0.00034 32.5 18.2 192 131-354 103-306 (353)
473 KOG1916 Nuclear protein, conta 89.1 0.25 5.5E-06 50.3 2.3 65 416-481 194-269 (1283)
474 TIGR03606 non_repeat_PQQ dehyd 88.9 16 0.00034 35.7 14.1 107 135-256 33-167 (454)
475 PF14761 HPS3_N: Hermansky-Pud 88.9 14 0.0003 31.6 14.7 119 144-266 29-165 (215)
476 COG1770 PtrB Protease II [Amin 88.6 30 0.00064 35.0 25.6 200 133-355 130-350 (682)
477 PF07995 GSDH: Glucose / Sorbo 87.7 13 0.00029 34.8 12.6 113 325-470 3-136 (331)
478 PF08801 Nucleoporin_N: Nup133 87.3 25 0.00054 34.3 14.9 32 448-479 190-221 (422)
479 TIGR03548 mutarot_permut cycli 87.2 26 0.00056 32.7 20.5 105 245-354 72-195 (323)
480 PF02333 Phytase: Phytase; In 87.1 28 0.0006 33.0 22.7 152 186-354 66-238 (381)
481 TIGR03547 muta_rot_YjhT mutatr 86.9 28 0.0006 32.8 17.6 23 141-163 62-95 (346)
482 TIGR02276 beta_rpt_yvtn 40-res 86.5 4.9 0.00011 23.7 6.5 40 244-284 1-41 (42)
483 PRK13615 lipoprotein LpqB; Pro 86.1 40 0.00088 34.0 19.7 151 135-307 337-502 (557)
484 PF11715 Nup160: Nucleoporin N 85.9 4 8.7E-05 41.4 8.9 74 141-214 156-256 (547)
485 PF07676 PD40: WD40-like Beta 85.7 2.6 5.7E-05 24.6 4.6 30 129-158 6-38 (39)
486 PF07250 Glyoxal_oxid_N: Glyox 85.5 14 0.0003 32.6 10.7 128 138-277 73-210 (243)
487 PF12657 TFIIIC_delta: Transcr 85.2 6.8 0.00015 32.6 8.4 30 236-265 87-122 (173)
488 PF07676 PD40: WD40-like Beta 85.0 4.6 9.9E-05 23.6 5.4 32 443-474 4-38 (39)
489 PF13449 Phytase-like: Esteras 85.0 34 0.00073 32.0 17.3 157 177-340 20-231 (326)
490 COG4590 ABC-type uncharacteriz 84.6 5.4 0.00012 37.8 8.0 163 176-356 220-389 (733)
491 PF10395 Utp8: Utp8 family; I 84.3 52 0.0011 33.7 16.3 159 131-306 129-304 (670)
492 KOG4460 Nuclear pore complex, 83.8 46 0.00099 32.6 16.6 96 235-357 104-202 (741)
493 COG4257 Vgb Streptogramin lyas 83.7 32 0.00069 30.7 19.7 202 131-354 61-263 (353)
494 PF12768 Rax2: Cortical protei 83.5 35 0.00075 31.0 14.1 118 153-285 16-145 (281)
495 PF11715 Nup160: Nucleoporin N 83.1 7 0.00015 39.7 9.2 87 186-272 156-256 (547)
496 PLN00033 photosystem II stabil 82.7 47 0.001 32.0 24.5 251 133-432 138-396 (398)
497 smart00564 PQQ beta-propeller 82.5 3.7 8.1E-05 22.8 4.1 26 418-443 7-32 (33)
498 PF14269 Arylsulfotran_2: Aryl 82.2 41 0.0009 30.9 24.1 127 179-306 59-219 (299)
499 KOG3616 Selective LIM binding 82.0 65 0.0014 33.1 15.0 69 131-205 14-82 (1636)
500 COG5276 Uncharacterized conser 81.8 39 0.00085 30.5 23.6 113 236-356 88-202 (370)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-52 Score=358.74 Aligned_cols=298 Identities=25% Similarity=0.376 Sum_probs=263.5
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
.+...+.+|.++|.|++|+|+|+.||+|+.|.++|+||+.+..+. ....+|...|.|++|+|||+.||+|+.||.|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 455678999999999999999999999999999999999987443 35678999999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHT 276 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 276 (498)
+||.++++.... ...+|...|++++|.| ..++||+++.||.|+|||+..+.++..+.+|+
T Consensus 183 lwdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 183 LWDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred EecCCCCCcccc---------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 999998876332 2247888999999987 56799999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc-----------CCCC---------
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-----------GDGR--------- 336 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-----------~~~~--------- 336 (498)
.+|+|+.|. ...+|++|+.|++|++|+.. .+.....+.+|...|+.++.+ |.++
T Consensus 248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~----dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRAL----DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred cceEEEEEc--CCceEEecCCCceEEEEEcc----chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 999999994 56799999999999999997 788999999999999999876 2233
Q ss_pred ----------------EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883 337 ----------------YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 400 (498)
Q Consensus 337 ----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
.+++|+.|.++.+|+..... +++....+|..
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------------------------------kpi~rmtgHq~ 368 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------------------------------KPITRMTGHQA 368 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccc---------------------------------cchhhhhchhh
Confidence 49999999999999976532 56666777774
Q ss_pred eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 401 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
... +..||||++++|+++.|..|++||..+|+.+..|++|-++|..++|+.|.++|++|+.|.++++|++.+.+
T Consensus 369 lVn------~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 369 LVN------HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hee------eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 433 33788899999999999999999999999999999999999999999999999999999999999998775
Q ss_pred CC
Q 010883 481 EA 482 (498)
Q Consensus 481 ~~ 482 (498)
..
T Consensus 443 l~ 444 (480)
T KOG0271|consen 443 LK 444 (480)
T ss_pred ec
Confidence 44
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.9e-49 Score=326.13 Aligned_cols=296 Identities=22% Similarity=0.363 Sum_probs=262.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...|++|.+.|+++.|++|+++|++++.||.+.|||.-+..+.+.+..... .|..++|+|.|+++|+|+.|+...||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~---WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS---WVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce---eEEEEEECCCCCeEEecCcCceeEEE
Confidence 367899999999999999999999999999999999988877666544433 79999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
++.+........... ...+|++-+.|+.|.+|+ +|++++.|.+..+||+++++.+..+.+|.+.|.++.
T Consensus 125 ~ls~~d~~g~~~v~r----------~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSR----------ELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred ecccccccccceeee----------eecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 998653322222221 224799999999999866 599999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
++|.+++.+++|+-|+..++||+| .+..++.|.+|...|+++.|.|+|.-|++|+.|+++++||+|.
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa--------- 260 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA--------- 260 (343)
T ss_pred cCCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC---------
Confidence 986699999999999999999999 8899999999999999999999999999999999999999998
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
++.+..|........+..+ +||..|++|++|..|.++.+||.-.++.+..+
T Consensus 261 -------------------------D~~~a~ys~~~~~~gitSv----~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 261 -------------------------DQELAVYSHDSIICGITSV----AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred -------------------------CcEEeeeccCcccCCceeE----EEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 5777777755544444444 56668999999999999999999999999999
Q ss_pred ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 444 ~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
.+|...|.++..+|||..++||++|.+++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999994
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-49 Score=340.50 Aligned_cols=304 Identities=24% Similarity=0.375 Sum_probs=269.1
Q ss_pred ccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---
Q 010883 110 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--- 186 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--- 186 (498)
+.+..+++.-...+...+.+|...|.|++|+|||+.||+|+.||+|++||..+|+++.. ...+|...|++++|.|
T Consensus 136 D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHL 213 (480)
T ss_pred CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeeccccc
Confidence 34445556656667788899999999999999999999999999999999999977665 4578888999999976
Q ss_pred --CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883 187 --DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264 (498)
Q Consensus 187 --~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~ 264 (498)
..++||+++.||.|+|||+..+.+..... ||+.+|+|++|--+| +|++|+.|++|++|+..
T Consensus 214 ~p~~r~las~skDg~vrIWd~~~~~~~~~ls----------------gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 214 VPPCRRLASSSKDGSVRIWDTKLGTCVRTLS----------------GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL 276 (480)
T ss_pred CCCccceecccCCCCEEEEEccCceEEEEec----------------cCccceEEEEEcCCc-eEEecCCCceEEEEEcc
Confidence 56899999999999999999887765544 799999999998666 79999999999999999
Q ss_pred CCeeeEEEeccCCCeeEEEEeC----------C-------------------------CCCEEEEeeCCCeEEEEcCccc
Q 010883 265 ANKLSLRILAHTSDVNTVCFGD----------E-------------------------SGHLIYSGSDDNLCKVWDRRCL 309 (498)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~~~----------~-------------------------~~~~l~s~s~dg~i~vwd~~~~ 309 (498)
.|++...+.+|...|+.++.+. + .++.|++|++|.++.+|+..
T Consensus 277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-- 354 (480)
T KOG0271|consen 277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-- 354 (480)
T ss_pred chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc--
Confidence 9999999999999999998861 1 23469999999999999976
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
...+++..+.+|..-|+.+.|+||+++||+++.|..|++||-++ +
T Consensus 355 -~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t----------------------------------G 399 (480)
T KOG0271|consen 355 -KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT----------------------------------G 399 (480)
T ss_pred -ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC----------------------------------c
Confidence 34568889999999999999999999999999999999999998 5
Q ss_pred ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
+.+.+|++|-.. .+..+||.|.++|++|+.|.++++||+++.++...+.+|.+.|.++.|+|||..+++|+.|.
T Consensus 400 k~lasfRGHv~~------VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 400 KFLASFRGHVAA------VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred chhhhhhhccce------eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence 777888888743 34447788999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEec
Q 010883 470 DVVRWE 475 (498)
Q Consensus 470 ~i~iw~ 475 (498)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-48 Score=337.65 Aligned_cols=284 Identities=23% Similarity=0.308 Sum_probs=257.1
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEEEEEC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~iwd~ 205 (498)
-+-+.+|..+.||+|++.||||+.+|.++||+..+...+ ....+|...|.++.|+|. +..||+++.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 456889999999999999999999999999999987433 456789999999999996 679999999999999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 285 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 285 (498)
.+......+. +|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.
T Consensus 249 ~~e~~l~~l~----------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 249 SQETPLQDLE----------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred CCCcchhhhh----------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence 8865433332 678899999999999999999999999999999999988889999999999997
Q ss_pred CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883 286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 365 (498)
Q Consensus 286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 365 (498)
++|.++++|+.|..-+|||++ ++.++..+.+|..+|.+++|+|+|..||||+.|++++|||++..
T Consensus 313 -~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------- 377 (459)
T KOG0272|consen 313 -PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------- 377 (459)
T ss_pred -CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc----------
Confidence 899999999999999999999 99999999999999999999999999999999999999999983
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 444 (498)
..+.++.+|.....-+ .|+| .|.+|++++.|++++||...+..+++.+.
T Consensus 378 ------------------------~~ly~ipAH~nlVS~V------k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 378 ------------------------SELYTIPAHSNLVSQV------KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred ------------------------ccceecccccchhhhe------EecccCCeEEEEcccCcceeeecCCCcccchhhc
Confidence 4566677777544332 4444 78999999999999999999999999999
Q ss_pred cCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
+|.+.|.++++++|+.+++|++.|.++++|.
T Consensus 428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999996
No 5
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-42 Score=302.23 Aligned_cols=305 Identities=27% Similarity=0.410 Sum_probs=261.0
Q ss_pred ccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883 116 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 195 (498)
Q Consensus 116 ~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s 195 (498)
...+|.+..+.+..|.++|+-+.||++|+|||+++.|.+..+|.+.....+.......+|..+|..+.||||.++|++++
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 35668888899999999999999999999999999999999999877655555556678888999999999999999999
Q ss_pred CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-
Q 010883 196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA- 274 (498)
Q Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~- 274 (498)
.+..+.+||+.+|........ ++...+.+++|.|||..+++|+.|+.+..||+.... .....+
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv 352 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGV 352 (519)
T ss_pred chHheeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccccc
Confidence 999999999999987655442 234589999999999999999999999999997644 233332
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
....|.+++.+ ++|.++++.+.|..|++++.. ...... +.....+|+++..+.|++++++.-.+..+.+||+..
T Consensus 353 r~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 353 RDPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred ccceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 23568999997 889999999999999999986 222222 334567899999999999999999999999999986
Q ss_pred CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883 355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 434 (498)
...+..|.||.....+++.+|.-- +..++++|++|+.|+||+.
T Consensus 427 ----------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 427 ----------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred ----------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEc
Confidence 356777888888788887777654 6689999999999999999
Q ss_pred CCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCC
Q 010883 435 VSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 435 ~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+|+++..+.||...|++++|+|..+ ++|++|+||+|+||.....
T Consensus 470 ~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 470 ISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999877 8999999999999987654
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-40 Score=274.41 Aligned_cols=291 Identities=20% Similarity=0.272 Sum_probs=238.1
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEE--EEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 125 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
..+.+|++.|+.++..+.+ ..+++++.|.++.+|++....... ......+|...|..+..++||++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 4678999999999999984 688999999999999987642111 1223456777999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-cCCCee
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN 280 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~v~ 280 (498)
+||+.+++....+. ||...|.+++|++|.+.+++|+.|.+|.+|++........... +.+.|+
T Consensus 89 lWDl~~g~~t~~f~----------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 89 LWDLATGESTRRFV----------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEEecCCcEEEEEE----------------ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 99999987655544 6888999999999999999999999999999976554433332 378999
Q ss_pred EEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 281 TVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 281 ~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
|+.|+|.. +-+|++++.|++|++||++ ..+....+.+|.+.++.++++|||...++|+.||.+.+||++..
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---- 224 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---- 224 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC----
Confidence 99999553 6799999999999999998 77888899999999999999999999999999999999999973
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
+.+..+.... . ..+.+|+|+...|+.+. +..|+|||+.++.+
T Consensus 225 ------------------------------k~lysl~a~~---~----v~sl~fspnrywL~~at-~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 225 ------------------------------KNLYSLEAFD---I----VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAV 266 (315)
T ss_pred ------------------------------ceeEeccCCC---e----EeeEEecCCceeEeecc-CCceEEEeccchhh
Confidence 3344443333 2 23446677766666665 44599999999988
Q ss_pred EEEecc----C-----CCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 440 VAALKY----H-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 440 ~~~~~~----h-----~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
+..++. . .-...+++|++||..|++|-.|+.|++|.+.
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877652 1 2235678999999999999999999999875
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=278.59 Aligned_cols=294 Identities=26% Similarity=0.390 Sum_probs=253.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|++.|+++.|+|+|.+||+|+.|..|.+|++.... .......+|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 45678999999999999999999999999999999976542 2233456999999999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
|+++|+.....+ +|..-|+++.-+.-|. ++.+|+.|+++++||+++...+..+ ..+..++++
T Consensus 118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv 180 (338)
T KOG0265|consen 118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAV 180 (338)
T ss_pred ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEE
Confidence 999999866555 5666788888555554 5667888999999999988877665 456789999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
.|. ..+..+.+|+-|+.|++||++ .......+.+|.++|+.+..+|+|.++.+.++|.++++||++....
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----- 250 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----- 250 (338)
T ss_pred Eec-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC-----
Confidence 998 777888999999999999999 8889999999999999999999999999999999999999987432
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCc--eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 440 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 440 (498)
..+++..+.++. .......| +|||+++.+.+|+.|..+++||..+...+
T Consensus 251 -------------------------~~R~v~if~g~~hnfeknlL~c----swsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 251 -------------------------SQRCVKIFQGHIHNFEKNLLKC----SWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred -------------------------CCceEEEeecchhhhhhhccee----eccCCCCccccccccceEEEeecccccEE
Confidence 235577777664 33344555 45669999999999999999999999999
Q ss_pred EEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 441 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
..+.+|.+.|++++|+|..++|.+++.|.+|++=+
T Consensus 302 yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999999999999999998744
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.6e-41 Score=294.76 Aligned_cols=306 Identities=21% Similarity=0.309 Sum_probs=252.6
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEE-EE------Ee----ecCCCceeEEEEEeCC
Q 010883 119 LPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKI-QK------DI----LAKSLRWTVTDTSLSP 186 (498)
Q Consensus 119 ~~~~~~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~-~~------~~----~~~~~~~~v~~~~~sp 186 (498)
+|......+. |.++|.+++|+|-.. +|++|+.|.+.++|++...... .. .. ........|++++|+.
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 4444445555 999999999999876 9999999999999998751000 00 00 0111234799999999
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883 187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
+|..||+|+.||.++||+...+....+. .|.++|.++.|+.+|.+|++++.|+++.+||..++
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~-----------------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLG-----------------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhh-----------------ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 9999999999999999998765442222 47889999999999999999999999999999999
Q ss_pred eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883 267 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 346 (498)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~ 346 (498)
.....+.-|..+-..+.|- +..-|++++.||.|+|+.+. ...|+.++.+|.+.|.++.|+|.+.+|++++.|++
T Consensus 309 ~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred eEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 9999999999888889995 56689999999999999997 78899999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc-----cCCCCcEEE
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV-----YSTGQKYIY 421 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~l~ 421 (498)
++||.... ...+..+..|.. .+....|+|. -...+..++
T Consensus 383 lkiWs~~~----------------------------------~~~~~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 383 LKIWSMGQ----------------------------------SNSVHDLQAHSK--EIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred eEeeecCC----------------------------------Ccchhhhhhhcc--ceeeEeecCCCCccCCCcCCceEE
Confidence 99999876 244555566652 2222333332 112467899
Q ss_pred EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
+++.|++|++||+..+.+++.|..|..+|.+++|+|+|+++|+|+.||.|.+|+...++....
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 999999999999999999999999999999999999999999999999999999988765443
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-40 Score=267.58 Aligned_cols=282 Identities=22% Similarity=0.333 Sum_probs=232.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCc
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 223 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (498)
-+||+++.|-+||+|...+|.+...+.. ....|+.+...|+++.||+++. ..|++||+.++.......+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh---~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e------ 80 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH---PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFE------ 80 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec---CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEe------
Confidence 4799999999999999999977776543 3447999999999999998875 67999999988764333322
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEE
Q 010883 224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 303 (498)
Q Consensus 224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~v 303 (498)
+|+..|+++.|..+|+.+++|+.||+++|||++...+.+. ..|.++|+++..+ |+..-|++|..+|.|++
T Consensus 81 --------~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlh-pnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 81 --------GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLH-PNQTELISGDQSGNIRV 150 (311)
T ss_pred --------ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh-ccCCCCcceEEec-CCcceEEeecCCCcEEE
Confidence 5777899999999999999999999999999999666444 4788999999998 66777889999999999
Q ss_pred EcCccccCCCceeEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883 304 WDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 382 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
||+. .......+. .....|.++...|||.+++.+...|.+++|++-.......+
T Consensus 151 WDl~----~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l--------------------- 205 (311)
T KOG0315|consen 151 WDLG----ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL--------------------- 205 (311)
T ss_pred EEcc----CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc---------------------
Confidence 9997 433333332 34468999999999999999999999999999773322221
Q ss_pred cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEeccCCCCeeeeEEcCCCCe
Q 010883 383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPM 461 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ 461 (498)
.++..++.|. ..+.+|. +|||+++||+++.|.+++||++.+. +....+++|...+++++||.||.+
T Consensus 206 -------~P~~k~~ah~--~~il~C~----lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 206 -------EPVHKFQAHN--GHILRCL----LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEY 272 (311)
T ss_pred -------eEhhheeccc--ceEEEEE----ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccE
Confidence 4555666666 3445554 5669999999999999999999887 666778899999999999999999
Q ss_pred EEEEeCCCcEEEecCCCCCCCC
Q 010883 462 LVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 462 l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
|+|++.|+.+++|++..+++..
T Consensus 273 lvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 273 LVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred EEecCCCCceeecccccCceee
Confidence 9999999999999999887543
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-39 Score=267.06 Aligned_cols=292 Identities=22% Similarity=0.339 Sum_probs=238.5
Q ss_pred CccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 124 PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
.+.+.+|+++|..++|+|- |..||+|+.|+.|++|+...+ .-..+.....+|+..|..++|+|.|++|+++|.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4567899999999999998 999999999999999999843 23344445568899999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEEeccCCC
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSD 278 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~ 278 (498)
||.-..++......+ .||...|.|++|+++|.+||+++.|.+|.||.+..+ ++...+..|...
T Consensus 87 Iw~k~~~efecv~~l--------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 87 IWKKEDGEFECVATL--------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EeecCCCceeEEeee--------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 999877665443332 378889999999999999999999999999998754 456778899999
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
|..+.|+ |...+|++++.|.+|++|+-.. .....++.++.+|...|.+++|++.|..|++++.|++++||.+...-..
T Consensus 153 VK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~ 230 (312)
T KOG0645|consen 153 VKHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG 230 (312)
T ss_pred ccEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch
Confidence 9999998 7778999999999999998764 3367789999999999999999999999999999999999986531100
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG- 437 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~- 437 (498)
.|. ..+ +...+. ...|++++.|+.|++|.-...
T Consensus 231 --------------------------------------~~s--r~~----Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 231 --------------------------------------MHS--RAL----YDVPWD--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred --------------------------------------hcc--cce----Eeeeec--ccceEeccCCCEEEEEEecCCC
Confidence 011 111 112222 457999999999999986542
Q ss_pred -----cEEE-EeccCCCCeeeeEEcCC-CCeEEEEeCCCcEEEecCC
Q 010883 438 -----EQVA-ALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 438 -----~~~~-~~~~h~~~v~~l~~sp~-~~~l~s~~~Dg~i~iw~~~ 477 (498)
+.+. .-..|...|++++|+|. ...|+++++||.|++|.+.
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1111 22478899999999995 5699999999999999874
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=293.10 Aligned_cols=290 Identities=22% Similarity=0.381 Sum_probs=251.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
..+.+|..+.|.|+|+.|++|+..|.+.+|+..+ +........|..+|.++.|++++.++++|+.+|.|++|+..-.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 3467899999999999999999999999999843 2233345788999999999999999999999999999998654
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 288 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 288 (498)
....... .|...|.+++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+ |.
T Consensus 171 nVk~~~a----------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~ 233 (464)
T KOG0284|consen 171 NVKIIQA----------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PT 233 (464)
T ss_pred hhHHhhH----------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Cc
Confidence 4322211 244689999999999999999999999999999999888999999999999998 67
Q ss_pred CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 368 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 368 (498)
..+|++|+.|..|++||.+ ++.++.++.+|...|..+.|+|++++|++++.|..++++|++++
T Consensus 234 kgLiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------------- 296 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------------- 296 (464)
T ss_pred cceeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-------------
Confidence 7799999999999999999 99999999999999999999999999999999999999999974
Q ss_pred cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCC
Q 010883 369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT 447 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~ 447 (498)
..+.++++|. ..+....|+|. ...+|.+|+.||.|..|.+...+++..+. +|.
T Consensus 297 ---------------------kEl~~~r~Hk--kdv~~~~WhP~---~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd 350 (464)
T KOG0284|consen 297 ---------------------KELFTYRGHK--KDVTSLTWHPL---NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHD 350 (464)
T ss_pred ---------------------HHHHHhhcch--hhheeeccccc---cccceeeccCCCceEEEeccccccccCCCcccc
Confidence 4556677776 34445556666 67889999999999999998777776664 899
Q ss_pred CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
..|++++|+|-|.+|++|+.|.++++|.-...++
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence 9999999999999999999999999998665444
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-40 Score=282.39 Aligned_cols=291 Identities=23% Similarity=0.295 Sum_probs=261.9
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
+..+.+.+|..+|+.+-|+|+-.++++++.|++|++||..+++. .....+|...|.+++|+..|++|++++.|-.++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 55678899999999999999999999999999999999999855 335678988999999999999999999999999
Q ss_pred EEECCCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 010883 202 IVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 280 (498)
Q Consensus 202 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 280 (498)
+||.++. ++... ..+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|...|.
T Consensus 176 LWd~~~~~~c~ks----------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 176 LWDFDTFFRCIKS----------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred heeHHHHHHHHHH----------------hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 9998763 11111 125677899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---------------CCEEEEEeCCC
Q 010883 281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKDQ 345 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---------------~~~l~s~~~dg 345 (498)
.+..+ .++.++++++.|.+|++|-+. ...+...+..|..+|.+++|.|. ++++.+++.|+
T Consensus 240 ~v~v~-~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 240 MVRVN-QDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EEEec-CCeeEEEecCCCceEEEEEec----cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 99997 899999999999999999997 77778889999999999999763 25899999999
Q ss_pred cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883 346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 425 (498)
Q Consensus 346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 425 (498)
+|++||+.+ +.++.++.+|..... ..+|+|.|+||+++..
T Consensus 315 tIk~wdv~t----------------------------------g~cL~tL~ghdnwVr------~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 315 TIKIWDVST----------------------------------GMCLFTLVGHDNWVR------GVAFSPGGKYILSCAD 354 (406)
T ss_pred eEEEEeccC----------------------------------CeEEEEEecccceee------eeEEcCCCeEEEEEec
Confidence 999999998 578889999885433 3478889999999999
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
|+++++||+.++++...+..|..-|+++.|+.+.++++||+-|.++++|.-
T Consensus 355 Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999999974
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-41 Score=293.19 Aligned_cols=250 Identities=22% Similarity=0.324 Sum_probs=224.7
Q ss_pred CCCCCccccCCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883 120 PVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197 (498)
Q Consensus 120 ~~~~~~~l~~h~~~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d 197 (498)
..+..+.|.+|.+.|.++.|+|. +.-+|+|+.||++++|++++...+. ...+|...|..++|+|+|++|++++.|
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~~L~TasfD 282 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGKFLGTASFD 282 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCceeeecccc
Confidence 34556789999999999999997 5689999999999999999864444 456788899999999999999999999
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 277 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 277 (498)
.+-++||+.++....... ||+.+|.+++|.+||..+++|+.|..-+|||++++.++..+.+|..
T Consensus 283 ~tWRlWD~~tk~ElL~QE----------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 283 STWRLWDLETKSELLLQE----------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred cchhhcccccchhhHhhc----------------ccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 999999999987544332 7999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCC
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
+|.+++|+ |+|..|++|+.|++++|||++ ....+..+.+|..-|+.+.|+| .|.+|++++.|++++||.-++
T Consensus 347 ~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-- 419 (459)
T KOG0272|consen 347 EILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-- 419 (459)
T ss_pred ceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--
Confidence 99999998 899999999999999999999 7777999999999999999998 788999999999999999887
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 433 (498)
.+++..+.+|.... ++.++++|+.++++++.|.++++|.
T Consensus 420 --------------------------------~~~~ksLaGHe~kV------~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 --------------------------------WSPLKSLAGHEGKV------ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------------------------------cccchhhcCCccce------EEEEeccCCceEEEeccCceeeecc
Confidence 47788888888432 3346777999999999999999995
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6e-39 Score=309.88 Aligned_cols=290 Identities=33% Similarity=0.531 Sum_probs=254.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC-CC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GS 207 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~-~~ 207 (498)
.|...|.|+.|+++|++|++++.|+.+++|+..+.+. .......+|...|.+++|+|+++++++++.|++|+|||+ ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3488999999999999999999999999999976642 122233678889999999999999999999999999999 44
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
+....... +|...|++++|+|+|+++++|+.|++|+|||++++++...+.+|...|++++|+ +
T Consensus 236 ~~~~~~l~----------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~ 298 (456)
T KOG0266|consen 236 GRNLKTLK----------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-P 298 (456)
T ss_pred CeEEEEec----------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-C
Confidence 35444433 688899999999999999999999999999999999999999999999999996 8
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCc--eeEEecccccc--EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
++++|++++.|+.|++||+. .+. +...+.++... ++++.|+|++.+|++++.|+.+++||++.
T Consensus 299 d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~--------- 365 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS--------- 365 (456)
T ss_pred CCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---------
Confidence 99999999999999999998 555 45666666655 99999999999999999999999999997
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
...+..+.+|... ..+.+++.+++++.++++|+.|+.|++||+.++..+..+
T Consensus 366 -------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 366 -------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred -------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 3566677777654 267778888899999999999999999999999999999
Q ss_pred ccC-CCCeeeeEEcCCCCeEEEEe--CCCcEEEecCC
Q 010883 444 KYH-TSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 477 (498)
Q Consensus 444 ~~h-~~~v~~l~~sp~~~~l~s~~--~Dg~i~iw~~~ 477 (498)
.+| ...+..++|+|..+++++++ .|+.+++|...
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999 89999999999999999998 78999999865
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-40 Score=295.03 Aligned_cols=300 Identities=21% Similarity=0.364 Sum_probs=257.5
Q ss_pred ccccCCCCCccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883 116 SRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 193 (498)
Q Consensus 116 ~~~~~~~~~~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 193 (498)
.-++|......+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.++. ...+|..+|.+++|+++|..+++
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCCeeee
Confidence 34668888889999999999999999 899999999999999999977 43333 55789999999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI 272 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~ 272 (498)
++.|+.|++||+++|++...+.... .++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred eecceeeeeeccccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 9999999999999999877766443 68999999998 88999999999999999999999999
Q ss_pred eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
..|-+.|..+.|- +++..+++.+.|++++||+.+ ...++... ..+.....++..+|+++++++-+.|..|.++.
T Consensus 339 d~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 339 DRHLGAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HhhhhheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 9999999999998 889999999999999999987 33333322 22334567899999999999999999999998
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEE
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 431 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 431 (498)
+...-. ...-..+.+|........+ .|||||.+|++|+.||.+.+
T Consensus 414 ~~~~~r-------------------------------~nkkK~feGh~vaGys~~v----~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 414 TVPPFR-------------------------------LNKKKRFEGHSVAGYSCQV----DFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred cccccc-------------------------------cCHhhhhcceeccCceeeE----EEcCCCCeEEeecCCccEEE
Confidence 654211 1334456777765555554 56669999999999999999
Q ss_pred EECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEec
Q 010883 432 YDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWE 475 (498)
Q Consensus 432 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~ 475 (498)
||.++-+++..+++|.+++..+.|+|..+ .+|||++||.|++|+
T Consensus 459 wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 459 WDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999876 899999999999996
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-38 Score=281.43 Aligned_cols=280 Identities=20% Similarity=0.348 Sum_probs=248.1
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
...|++++|+.+|++||+|+.||.++||+...+ .......|.++|.++.|+.+|.||++++.|+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 457999999999999999999999999998764 3345678999999999999999999999999999999999887
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 290 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (498)
...+.+ |..+-.++.|-.+. .+++.+.|+.|+|+.+....++.++.+|.+.|.++.|+ +.+.
T Consensus 311 ~q~f~~----------------~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~ 372 (524)
T KOG0273|consen 311 KQQFEF----------------HSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGS 372 (524)
T ss_pred EEeeee----------------ccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCc
Confidence 666553 33345678887554 59999999999999999999999999999999999997 8899
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---------RYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
+|++++.|++++||... .......+.+|...|..+.|+|+| ..|++++.|++|++||+..
T Consensus 373 LLaS~SdD~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~------- 441 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES------- 441 (524)
T ss_pred eEEEecCCCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-------
Confidence 99999999999999987 778888999999999999999965 4689999999999999988
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
+.++..|..|.... ++++|||+|+|+|+|+.||.|.+|++.+++.++
T Consensus 442 ---------------------------gv~i~~f~kH~~pV------ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 442 ---------------------------GVPIHTLMKHQEPV------YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ---------------------------CceeEeeccCCCce------EEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 57888888887433 445888899999999999999999999999999
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
.+.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 489 s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 489 SYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9985 4569999999999999999999999998874
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.6e-40 Score=309.40 Aligned_cols=290 Identities=24% Similarity=0.398 Sum_probs=241.5
Q ss_pred cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883 117 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 196 (498)
Q Consensus 117 ~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~ 196 (498)
.-+|.-+...+..-...++|+.|++|++.||.|..|..|++|.+... ++.+. .+ ..+- ..+=+.+.
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l---k~-------~~~l---~~~d~~sa 429 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL---KD-------ASDL---SNIDTESA 429 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc---cc-------hhhh---cccccccc
Confidence 33455555666777788999999999999999999999999998753 22211 11 1111 11122333
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 276 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 276 (498)
|-.+.+.|-.++..... ..||.++|..+.|+|+.++|++++.|++|++|.+.+..++..+.+|.
T Consensus 430 d~~~~~~D~~~~~~~~~----------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~ 493 (707)
T KOG0263|consen 430 DVDVDMLDDDSSGTSRT----------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL 493 (707)
T ss_pred chhhhhccccCCceeEE----------------eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC
Confidence 43455555444332221 23799999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
.+|.++.|+ |.|.+|++++.|++.++|... ...+++.+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+
T Consensus 494 ~PVwdV~F~-P~GyYFatas~D~tArLWs~d----~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-- 566 (707)
T KOG0263|consen 494 APVWDVQFA-PRGYYFATASHDQTARLWSTD----HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-- 566 (707)
T ss_pred cceeeEEec-CCceEEEecCCCceeeeeecc----cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC--
Confidence 999999998 889999999999999999998 7889999999999999999999999999999999999999998
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
+..++.|.+|......+ +|||+|++|++|+.||.|.+||+.+
T Consensus 567 --------------------------------G~~VRiF~GH~~~V~al------~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 567 --------------------------------GNSVRIFTGHKGPVTAL------AFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred --------------------------------CcEEEEecCCCCceEEE------EEcCCCceEeecccCCcEEEEEcCC
Confidence 57889999988544333 6777999999999999999999999
Q ss_pred CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 437 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
++++..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+.....
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999999999999999999999999999999999875543
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.2e-37 Score=274.72 Aligned_cols=343 Identities=19% Similarity=0.268 Sum_probs=261.8
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883 119 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198 (498)
Q Consensus 119 ~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~ 198 (498)
.|-+-...++.|..-|+|+.|+|||+++|+++.||+|.+||-.+|+.+..+.....|.+.|.+++|+||++.+++++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 34444456788999999999999999999999999999999999999888777789999999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 278 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (498)
+++|||+.+.++...+.+....+. .-..+.|. +..|++.+.+|.|.+++......+..+.+|...
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~d-------------qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVED-------------QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhc-------------eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 999999999988777665543221 34445565 557999999999999999999998999999999
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
|++++.+ +++.+|++|+.||.|.-||.. .+..-... ..|...|.+++.+..+ .+++.+.|.++++.++.....
T Consensus 323 ITaLtv~-~d~~~i~SgsyDG~I~~W~~~----~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 323 ITALTVS-PDGKTIYSGSYDGHINSWDSG----SGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred eeEEEEc-CCCCEEEeeccCceEEEEecC----CccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcc
Confidence 9999998 778999999999999999986 33333222 5688889888877544 477778888888887743211
Q ss_pred ccc-----------c---cc-----------------C----cccccccceeecCCcCcccccCC-CCceEEEEccCc--
Q 010883 358 NAS-----------C---NL-----------------G----FRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHS-- 399 (498)
Q Consensus 358 ~~~-----------~---~~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 399 (498)
... . .. . ..........++..++...+... .+..++.+....
T Consensus 397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred cccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence 100 0 00 0 01122334455556655554443 334444443221
Q ss_pred e-----eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE-EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883 400 V-----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 400 ~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
. ...........+||||+.|||++...+.|.+||+.+.+... .+..|...|.+++|+|+..++|||+.|..|.|
T Consensus 477 l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 477 LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII 556 (603)
T ss_pred ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence 1 11111223445799999999999999999999999987632 33459999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 010883 474 WEFPGNGEA 482 (498)
Q Consensus 474 w~~~~~~~~ 482 (498)
|++....+.
T Consensus 557 ysv~kP~~~ 565 (603)
T KOG0318|consen 557 YSVKKPAKH 565 (603)
T ss_pred EEccChhhh
Confidence 999876554
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=265.22 Aligned_cols=290 Identities=17% Similarity=0.248 Sum_probs=247.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|.+.|.|+++.|-..+|++|+.|++|+|||+.+|... ....+|-..|..+++|+...||++++.|+.|+.|
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 3467899999999999999999999999999999999999433 3456788899999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
|++..+.+.... ||-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.
T Consensus 221 DLe~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 221 DLEYNKVIRHYH----------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred echhhhhHHHhc----------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 999888765543 7888999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
+.|.+ -.+++|+.|++|++||++ .++....+..|...|.+++.+|....+++++.| .|+-|++..+
T Consensus 285 ~~~~d-pqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g-------- 350 (460)
T KOG0285|consen 285 CQPTD-PQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG-------- 350 (460)
T ss_pred eecCC-CceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc--------
Confidence 98544 467899999999999999 889999999999999999999999999999887 5899998763
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
..+..+.+|.......... ...++++|+.+|.+.+||.++|-..+.+
T Consensus 351 --------------------------~f~~nlsgh~~iintl~~n-------sD~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 351 --------------------------EFLQNLSGHNAIINTLSVN-------SDGVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred --------------------------chhhccccccceeeeeeec-------cCceEEEcCCceEEEEEecCcCcccccc
Confidence 4444456665443333221 3458899999999999999998655444
Q ss_pred c--------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 444 K--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 444 ~--------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
+ .....|.+.+|...|..|+||..|.+|++|.-...
T Consensus 398 ~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 398 QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 2 12456899999999999999999999999986543
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-36 Score=279.08 Aligned_cols=287 Identities=31% Similarity=0.476 Sum_probs=243.7
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..+.+|.++|++++|+|++++|++++.||.|++|++.++..... ...|...+..+.|+|++++|++++.++.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 45678999999999999999999999999999999988753332 345666889999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
+.+++...... .|...+.++.|+++++++++++.++.|.+||+.+++....+..|...+.+++|
T Consensus 80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 98764332222 24457999999999888888888999999999988888888889999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
+ +++.++++++.|+.|++||++ ..+.+..+..|...+.++.|+|+++.+++++.|+.|++||++..
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------- 209 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--------- 209 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------
Confidence 8 668888888889999999997 66777788888889999999999999999999999999999862
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 444 (498)
..+..+..+.. .+ ..+.++|++.++++++.||.|++||+.+++.+..+.
T Consensus 210 -------------------------~~~~~~~~~~~--~i----~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 210 -------------------------KCLGTLRGHEN--GV----NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred -------------------------ceecchhhcCC--ce----EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 33333333332 22 233566688888888889999999999999999999
Q ss_pred cCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
.|...|.+++|+|++++|++++.||.|++|+
T Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999996
No 21
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-37 Score=249.85 Aligned_cols=290 Identities=22% Similarity=0.363 Sum_probs=253.3
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883 119 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198 (498)
Q Consensus 119 ~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~ 198 (498)
+|......+..|.++|.++.|+-||+|.++++.|.+|++|+...|..+.. ..+|...|.+++.+.|+..+++++.|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCc
Confidence 36667778899999999999999999999999999999999999866654 457777999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEEeccC
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHT 276 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~ 276 (498)
.|.+||+.+|+....+. +|.+.|+.++|+.+...+++|+.|.++++||.++. ++++.+....
T Consensus 82 ~v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred eEEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 99999999999876655 78889999999999999999999999999998765 5677777788
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
..|.++..+ +..|++|+.||+++.||++ .+.......+ .+|+++.|++|++..++++.|+++++.|-.+
T Consensus 146 D~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~t-- 214 (307)
T KOG0316|consen 146 DGVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKET-- 214 (307)
T ss_pred CceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccch--
Confidence 899999986 6689999999999999999 7766665554 5899999999999999999999999999888
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
++.+..+++|.....-..|.+.. ....+++|++||.|++||+..
T Consensus 215 --------------------------------GklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 215 --------------------------------GKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred --------------------------------hHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEecc
Confidence 57778889998777777776554 567899999999999999999
Q ss_pred CcEEEEeccCCCC-eeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 437 GEQVAALKYHTSP-VRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 437 ~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
...+..+..|... |.+++++|.-..|+++.. +.+.+|.
T Consensus 259 ~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 259 ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 9999999988877 899999999887777754 4566664
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-36 Score=313.91 Aligned_cols=295 Identities=20% Similarity=0.349 Sum_probs=235.3
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV 200 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i 200 (498)
.+..|.+.|++++|+|+|++||+|+.|+.|+||++... ...........+...|.+++|+| ++.+|++++.||+|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 45669999999999999999999999999999997542 11100011112234799999987 47899999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
++||+.+++...... +|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..|
T Consensus 558 ~lWd~~~~~~~~~~~----------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 558 QVWDVARSQLVTEMK----------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEECCCCeEEEEec----------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 999998876543322 5777999999997 7889999999999999999999888777644 689
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc-eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
.++.|+++++.+|++|+.||.|++||++ ... ++..+.+|...|.++.|. ++.+|++++.|+.|++||++.....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~----~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLR----NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECC----CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 9999987889999999999999999997 333 566778999999999997 6789999999999999999753210
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
. ....+..+.+|...... ..|++++.+|++|+.|+.|++|+.....
T Consensus 696 ~----------------------------~~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 696 I----------------------------NETPLHSFMGHTNVKNF------VGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred c----------------------------CCcceEEEcCCCCCeeE------EEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 0 02456677777643322 2567789999999999999999987665
Q ss_pred EEEEe-------------ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 439 QVAAL-------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 439 ~~~~~-------------~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
.+..+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 44322 234567999999999999999999999999986
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=250.58 Aligned_cols=283 Identities=18% Similarity=0.251 Sum_probs=234.8
Q ss_pred cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883 115 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 194 (498)
Q Consensus 115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 194 (498)
++......+...++.-.+.|+.+.+.||++.||+++. ..||+||+.++... ......+|...|+++.|..+|+++++|
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTg 101 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTG 101 (311)
T ss_pred eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEec
Confidence 4444455555667777899999999999999999975 47999999987553 334556788899999999999999999
Q ss_pred ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL- 273 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~- 273 (498)
+.||+++|||++...+.+.+. |..+|+++..+|+...|++|..+|.|++||+.+..+...+.
T Consensus 102 seDgt~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred CCCceEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence 999999999999866655544 34489999999999999999999999999999987766654
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc--CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
.....|.+++.. +++.+++.+...|.+++|++-... ..-.++..++.|.+.+..+.+|||+++|++++.|.+++||+
T Consensus 165 e~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 165 EDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 344689999997 899999999999999999986422 23457778899999999999999999999999999999999
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEE
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 431 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 431 (498)
...+- ..-..+.+|. +..|..+||.||.||++|+.|+.+++
T Consensus 244 ~~~~~---------------------------------kle~~l~gh~------rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 244 TDDFF---------------------------------KLELVLTGHQ------RWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred cCCce---------------------------------eeEEEeecCC------ceEEeeeeccCccEEEecCCCCceee
Confidence 98741 2333445554 34455577779999999999999999
Q ss_pred EECCCCcEEEEeccCCCCeeeeEEc
Q 010883 432 YDLVSGEQVAALKYHTSPVRDCSWH 456 (498)
Q Consensus 432 wd~~~~~~~~~~~~h~~~v~~l~~s 456 (498)
||+..++.+..+.+|..+..|++..
T Consensus 285 W~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 285 WDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cccccCceeeecCCcccccEEEEee
Confidence 9999999999999998888877754
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.4e-37 Score=261.46 Aligned_cols=325 Identities=17% Similarity=0.193 Sum_probs=239.0
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
.....+..|+..|++++.+|+.+++|||+.|..-.||++.++... ....+|...|+++.|+.+|.+||+|+.+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 345678999999999999999999999999999999999999633 35578999999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
||...++.....+... -..+.-+.|+|.+..|++|+.||.|.+|.+.++...+.+.+|..++++
T Consensus 132 v~~~stg~~~~~~~~e----------------~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQE----------------VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred EEEcccCceEEEeecc----------------cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence 9999998765444210 115888999999999999999999999999998888889999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC----
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS---- 356 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~---- 356 (498)
=.|. |+|+.++++..||+|++|++. ++.++..+... ....+++.++..+..++.|+.++.+++-+..+++
T Consensus 196 G~f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 196 GEFI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 9998 679999999999999999997 66666665522 1234445555555555555555544444333211
Q ss_pred ---CccccccCcccccccceeecCCcCcccccCC-CC----------ceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 357 ---SNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CD----------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 357 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
...............+....+.......+.. -+ ..++..-.|. ..++++.|-+ ..+|++
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he--~~V~~l~w~~-----t~~l~t 343 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE--DGVTKLKWLN-----TDYLLT 343 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC--CceEEEEEcC-----cchhee
Confidence 0111111111111111111111111111110 01 2222222233 2244444432 478999
Q ss_pred EecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 423 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 423 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
++.+|.|+.||.++|+++.++.+|...|.+++++|+.++++|+|.|++.+|++++
T Consensus 344 ~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999875
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=248.90 Aligned_cols=262 Identities=22% Similarity=0.325 Sum_probs=224.9
Q ss_pred eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883 170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l 249 (498)
..+++|.+.|.++.|++|.++|++++.||.+.|||.-+......+.++. ..|..++|+|.|+++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s----------------~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS----------------SWVMTCAYSPSGNFV 112 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc----------------eeEEEEEECCCCCeE
Confidence 4567899999999999999999999999999999988776555544332 279999999999999
Q ss_pred EEEeCCCeEEEEECCCC------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883 250 VAGSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
|+|+.|+...||++.+. ...+.+.+|.+.+.|+.|. + ...|++++.|.++.+||++ +++.+..+.+|.
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-d-D~~ilT~SGD~TCalWDie----~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-D-DNHILTGSGDMTCALWDIE----TGQQTQVFHGHT 186 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEc-C-CCceEecCCCceEEEEEcc----cceEEEEecCCc
Confidence 99999999999999865 3456688999999999996 4 6678899999999999998 999999999999
Q ss_pred ccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883 324 EGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 402 (498)
Q Consensus 324 ~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (498)
+.|.+++++| +++.+++|+.|+..++||+|. +..+++|.+|....
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~----------------------------------~~c~qtF~ghesDI 232 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS----------------------------------GQCVQTFEGHESDI 232 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccC----------------------------------cceeEeeccccccc
Confidence 9999999999 999999999999999999998 57888999998544
Q ss_pred EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
..+ .|-|+|.-+++|+.|++.++||++..+.+..+.. -..+|++++||..|++|++|..|.++.+||.-.++
T Consensus 233 Nsv------~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 233 NSV------RFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ceE------EEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 333 4556999999999999999999999999888862 23689999999999999999999999999987766
Q ss_pred CCCCcc-chhceee
Q 010883 481 EAAPPL-NKKRIRR 493 (498)
Q Consensus 481 ~~~~~~-~~~~~~~ 493 (498)
...... +..|+..
T Consensus 307 ~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 307 RVGVLAGHENRVSC 320 (343)
T ss_pred eEEEeeccCCeeEE
Confidence 543322 3334443
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-36 Score=248.29 Aligned_cols=255 Identities=21% Similarity=0.299 Sum_probs=213.4
Q ss_pred EeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC
Q 010883 169 DILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 247 (498)
Q Consensus 169 ~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~ 247 (498)
.....+|.+.|+.++..+. ...+++++.|..+.+|++....... ........||...|..+..++||+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-----------G~~~r~~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-----------GVPVRRLTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-----------CceeeeeeccceEecceEEccCCc
Confidence 3456789999999999987 5688889999999999997652211 011122347888999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc--ccc
Q 010883 248 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEG 325 (498)
Q Consensus 248 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~ 325 (498)
+.++++.|+.+++||+.+++..+++.+|...|.+++|+ +++..+++|+.|.+|++|++ .+.+..++..+ .+.
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-----~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-----LGVCKYTIHEDSHREW 150 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeee-----cccEEEEEecCCCcCc
Confidence 99999999999999999999999999999999999998 88899999999999999998 46666666544 688
Q ss_pred EEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 326 ITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 326 v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
|.++.|+|+ ..+|++++.|++|++||+++. +....+.+|....+
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----------------------------------~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----------------------------------QLRTTFIGHSGYVN 196 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCc----------------------------------chhhccccccccEE
Confidence 999999998 689999999999999999983 34455666664333
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.. ++||||.+.++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+. +..|+|||+......
T Consensus 197 t~------~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 197 TV------TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV 267 (315)
T ss_pred EE------EECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence 32 678899999999999999999999999988886 788999999999988777665 456999999887554
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=283.43 Aligned_cols=334 Identities=18% Similarity=0.198 Sum_probs=267.2
Q ss_pred cccccccccccCCCCCccccCCCCceEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC
Q 010883 109 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 186 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~--~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp 186 (498)
++....++++--......|.+|.+.|.++.|+|+-+ +|++|..|+++++||+.+... .......|...|++++|++
T Consensus 125 aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~ 202 (775)
T KOG0319|consen 125 ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSE 202 (775)
T ss_pred ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeecc
Confidence 345556677777777789999999999999999875 588999999999999997533 2344567888999999999
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccccccccCccc-------------------------------------ccc-
Q 010883 187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDF-------------------------------------SAA- 228 (498)
Q Consensus 187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~- 228 (498)
|+..+++++.|..+.|||+.+.+........+..++..+ +..
T Consensus 203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~ 282 (775)
T KOG0319|consen 203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE 282 (775)
T ss_pred CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence 999999999999999999865433221111100000000 000
Q ss_pred -----------------------------------------------------------------------------CCC
Q 010883 229 -----------------------------------------------------------------------------DDG 231 (498)
Q Consensus 229 -----------------------------------------------------------------------------~~~ 231 (498)
.-.
T Consensus 283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~ 362 (775)
T KOG0319|consen 283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP 362 (775)
T ss_pred hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe
Confidence 001
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
||+..|.++....+|-+|++|+.|.++++|.++.+. ++....+|...|.+++++.....+|+++|.|+++++|++.
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 788889999866678899999999999999885443 3445669999999999987777899999999999999997
Q ss_pred cccCCCcee-E----EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883 308 CLNVKGKPA-G----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 382 (498)
Q Consensus 308 ~~~~~~~~~-~----~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
.......++ . ....|...|++++++|+.++|+||+.|++.+||++..
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~---------------------------- 494 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ---------------------------- 494 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC----------------------------
Confidence 422121111 1 3456999999999999999999999999999999985
Q ss_pred cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeE
Q 010883 383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 462 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 462 (498)
.+...++.+|. +..|+..|+|..+.++++|.|++|+||.+.+..+++++.+|...|..+.|-.+++.|
T Consensus 495 ------~~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 495 ------LRLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred ------ceEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEE
Confidence 36788889988 344666788899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEecCCCCCCCCC
Q 010883 463 VSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 463 ~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
+|++.||.|++|++.+++....
T Consensus 563 iS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred EeccCCCcEEEEeccchhhhhh
Confidence 9999999999999998876543
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-36 Score=279.93 Aligned_cols=302 Identities=21% Similarity=0.311 Sum_probs=253.9
Q ss_pred CCCccccCCCCceEEEEE-cCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeE
Q 010883 122 NGPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 200 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~-s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i 200 (498)
.....+-|..+.|..++| .|+.++||.++..+.+|+|++.+.... ...+|...|.++....+|-+|++++.|+++
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 334556788899999987 567799999999999999998876333 457899999999966778999999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee-----eE----
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-----SL---- 270 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~-----~~---- 270 (498)
++|.++.+....... ....+|+..|.+++++..+ .+|++++.|.++++|++...+. ..
T Consensus 390 ilWr~~~~~~~~~~~------------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCV------------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred EEEEecCCcchhhhh------------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 999985443322111 1123788899999998754 5899999999999999976221 11
Q ss_pred EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 271 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 271 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
....|...|+|++++ |++.++++||.|.+.+||++. ......++.+|..+|.++.|+|..+.+++++.|++|+||
T Consensus 458 t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 458 TERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred HHHhhcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 223799999999998 889999999999999999998 888999999999999999999999999999999999999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
.+.+ ..++.++.+|.. .+.++.| -.+|+.|++++.||-|+
T Consensus 533 ~is~----------------------------------fSClkT~eGH~~--aVlra~F----~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 533 SIST----------------------------------FSCLKTFEGHTS--AVLRASF----IRNGKQLISAGADGLIK 572 (775)
T ss_pred Eecc----------------------------------ceeeeeecCccc--eeEeeee----eeCCcEEEeccCCCcEE
Confidence 9998 478889999983 4444443 34899999999999999
Q ss_pred EEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 431 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
+|++.+++++.++..|.+.|++++.+|...+++||+.||.|.+|.=.+..+...
T Consensus 573 lWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~e 626 (775)
T KOG0319|consen 573 LWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNE 626 (775)
T ss_pred EEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHH
Confidence 999999999999999999999999999999999999999999997555544433
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.9e-37 Score=261.99 Aligned_cols=275 Identities=26% Similarity=0.386 Sum_probs=233.5
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
....|+|+++. ...+++|..|++|+|||.++-.... ...+|.+.|.|+.| +.+.|++|+.|.+|+|||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 46679999995 4569999999999999998754333 45789999999998 56799999999999999999998
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEEeccCCCeeEEEEeC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~ 286 (498)
.....- +|...|..+.|+ +.++++++.|.+|.+||+..... .+.+.+|...|+.+.|.
T Consensus 269 ~l~tli----------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 269 PLNTLI----------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred hhhHHh----------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence 765543 577789999997 34899999999999999987652 23466999999999995
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
.+++++++.|.+|++|++. +...+.++.+|..+|.|+.+ .++++++|+.|.+|++||+..
T Consensus 330 --~kyIVsASgDRTikvW~~s----t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~------------ 389 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC------------ 389 (499)
T ss_pred --cceEEEecCCceEEEEecc----ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc------------
Confidence 4599999999999999998 88999999999999999988 578999999999999999987
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc--------
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-------- 438 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-------- 438 (498)
+..+..+++|......+++ |.+.+++|..||+|+|||+..+.
T Consensus 390 ----------------------G~cLRvLeGHEeLvRciRF--------d~krIVSGaYDGkikvWdl~aaldpra~~~~ 439 (499)
T KOG0281|consen 390 ----------------------GACLRVLEGHEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALDPRAPAST 439 (499)
T ss_pred ----------------------cHHHHHHhchHHhhhheee--------cCceeeeccccceEEEEecccccCCcccccc
Confidence 5677788888866555433 78899999999999999998764
Q ss_pred -EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 439 -QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 439 -~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
++..+..|.+.|..+.| |...+++++.|.+|.|||+.++...
T Consensus 440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 23445579999999999 6778999999999999999877544
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=267.13 Aligned_cols=299 Identities=18% Similarity=0.347 Sum_probs=254.5
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-----------------------CeE--------EEEEe
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----------------------GWK--------IQKDI 170 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~-----------------------~~~--------~~~~~ 170 (498)
-.+..+.+|++.|-.+-|..|..-+++.+.||.+.+|.... ++. ..+..
T Consensus 180 ~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 180 LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEee
Confidence 34678899999999999999999999999999999998771 111 01111
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
........|++.+|++..+.|++|-..|...++.+..-.++....+.. .+|..++|+..|.+||
T Consensus 260 ~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~----------------~~I~t~~~N~tGDWiA 323 (893)
T KOG0291|consen 260 YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD----------------QKILTVSFNSTGDWIA 323 (893)
T ss_pred eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc----------------ceeeEEEecccCCEEE
Confidence 122223579999999999999999999999999999887766665442 2799999999999999
Q ss_pred EEeCC-CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 251 AGSSD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 251 ~g~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
.|+.. |.+.||+..+..-+....+|...+++++++ |+++++++|+.||.|+|||.. .+-+..++..|+..|+.+
T Consensus 324 ~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~----SgfC~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 324 FGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQ----SGFCFVTFTEHTSGVTAV 398 (893)
T ss_pred EcCCccceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEecc----CceEEEEeccCCCceEEE
Confidence 99865 899999999999888889999999999998 899999999999999999998 889999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
.|+..|+.+++.+.||+|+.||+... ...++|........ .
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRY----------------------------------rNfRTft~P~p~Qf-----s 439 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRY----------------------------------RNFRTFTSPEPIQF-----S 439 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeeccc----------------------------------ceeeeecCCCceee-----e
Confidence 99999999999999999999999873 44455544432111 1
Q ss_pred ccccCCCCcEEEEEecCC-eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 410 SPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+.+..|.|.++.+|+.|. .|++|++.+|+++-.+.+|.+||.+++|+|++..|+|+++|.+|++|++-...
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence 224556799999999886 69999999999999999999999999999999999999999999999997663
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-33 Score=253.39 Aligned_cols=311 Identities=18% Similarity=0.263 Sum_probs=253.9
Q ss_pred ccccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC
Q 010883 108 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 187 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 187 (498)
..+.+.+....-.........+|..+++...|||.|.|+|+|...|+|||||....+.+.+. ......++|.+++|++|
T Consensus 36 ~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn-ef~v~aG~I~Di~Wd~d 114 (603)
T KOG0318|consen 36 TNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN-EFQVLAGPIKDISWDFD 114 (603)
T ss_pred eCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee-eeeecccccccceeCCC
Confidence 34444444444444556778899999999999999999999999999999998774444332 23345569999999999
Q ss_pred CCeEEEEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 010883 188 QRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYD 262 (498)
Q Consensus 188 ~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd 262 (498)
++.|++.+.. |.+.+||..+ ....+ .||...|+++.|-|.-. .+++|+.|++|.+|+
T Consensus 115 s~RI~avGEGrerfg~~F~~DSG~--SvGei----------------~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe 176 (603)
T KOG0318|consen 115 SKRIAAVGEGRERFGHVFLWDSGN--SVGEI----------------TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE 176 (603)
T ss_pred CcEEEEEecCccceeEEEEecCCC--cccee----------------eccceeEeeeeccCCCceEEEeccCCCeEEEee
Confidence 9999987753 3566676543 22221 27888999999998655 689999999999998
Q ss_pred CCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec---cccccEEEEEEcCCCCEEE
Q 010883 263 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLI 339 (498)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~ 339 (498)
=.--+....+..|...|+|+.|+ |++.++++.+.||.|.+||-. .++.+..+. +|.+.|.+++|+||+..|+
T Consensus 177 GPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred CCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCCCceEE
Confidence 77777777888999999999998 789999999999999999987 888888887 8999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-eeEEEEEEEeccccCCCCc
Q 010883 340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQK 418 (498)
Q Consensus 340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~ 418 (498)
+++.|.+++|||+.+. ..+.++.... .......|.|. +.
T Consensus 252 T~SaDkt~KIWdVs~~----------------------------------slv~t~~~~~~v~dqqvG~lWq------kd 291 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTN----------------------------------SLVSTWPMGSTVEDQQVGCLWQ------KD 291 (603)
T ss_pred EecCCceEEEEEeecc----------------------------------ceEEEeecCCchhceEEEEEEe------CC
Confidence 9999999999999884 3344443222 12233444443 56
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.|++.+.+|.|.+++......+..+.+|...|+++..+|++++|++|+.||.|.-|+...+...
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 7999999999999999999999999999999999999999999999999999999999877654
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-34 Score=266.37 Aligned_cols=294 Identities=19% Similarity=0.305 Sum_probs=250.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-CeEEEEECCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVGS 207 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~~i~iwd~~~ 207 (498)
.....|+|.+|++.-+.||+|...|...+|.+..-..++...... .+|..++|+..|.+||.|+.. |.+-||++.+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 344889999999999999999999999999999876666554332 279999999999999998764 7999999988
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
...+...+ +|...+++++++|||+++|+|+.||.|+|||..++-+..++..|++.|+.+.|+ .
T Consensus 340 EsYVlKQQ----------------gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~ 402 (893)
T KOG0291|consen 340 ESYVLKQQ----------------GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-A 402 (893)
T ss_pred cceeeecc----------------ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-e
Confidence 66543322 688899999999999999999999999999999999999999999999999998 8
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-ccEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCCCccccccCc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGF 365 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~ 365 (498)
.++.+++.+-||+|+.||+. .....+++.... ....+++..|.|..+++|+.|. .|.+|++.+
T Consensus 403 ~g~~llssSLDGtVRAwDlk----RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT----------- 467 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLK----RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT----------- 467 (893)
T ss_pred cCCEEEEeecCCeEEeeeec----ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-----------
Confidence 89999999999999999997 777777777543 3467889999999999999886 499999998
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc-EEEEec
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALK 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~ 444 (498)
++.+..+.+|.... .+.+|+|++..|++++.|.+|++||+-... .+.++.
T Consensus 468 -----------------------GqllDiLsGHEgPV------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 468 -----------------------GQLLDILSGHEGPV------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred -----------------------CeeeehhcCCCCcc------eeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 57888889998433 233677799999999999999999986653 444554
Q ss_pred cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccc
Q 010883 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 487 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~ 487 (498)
+...+..++|+|+|+.|+++..||.|.+||.....+...+..
T Consensus 519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 677899999999999999999999999999988766644333
No 33
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.4e-36 Score=252.06 Aligned_cols=288 Identities=22% Similarity=0.295 Sum_probs=245.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-----EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-----DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
+.++.+-|..|||||+||++|+.||.|.|||..+|+.... .....-+..+|.|+.|+.|...||+|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 4577789999999999999999999999999998832211 11122345689999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
.+.+|.+...+.- .|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..+.+|.+.|+...
T Consensus 291 ri~tG~ClRrFdr---------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 291 RIETGQCLRRFDR---------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEecchHHHHhhh---------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 9999998765542 4777999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--ccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNAS 360 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 360 (498)
|. ++|+.+++++.||+|++|+.. ...++.++.. ..-+|+.+-.-| +..+++++....+|+|.++..
T Consensus 356 ft-~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------ 424 (508)
T KOG0275|consen 356 FT-DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------ 424 (508)
T ss_pred Ec-CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence 98 899999999999999999997 6677766654 344677777666 557899999999999999875
Q ss_pred cccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
+.++.+... ......+.+ +.||.|.++++.+.|+.++.|.+.+|++
T Consensus 425 -----------------------------QvVrsfsSGkREgGdFi~~----~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 -----------------------------QVVRSFSSGKREGGDFINA----ILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred -----------------------------eEEeeeccCCccCCceEEE----EecCCCcEEEEEccCcEEEEEEeecCce
Confidence 667766533 333344444 4566899999999999999999999999
Q ss_pred EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 440 ~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
..++..|...|..++-+|..+.||+-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999996
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-35 Score=265.83 Aligned_cols=286 Identities=21% Similarity=0.259 Sum_probs=249.3
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..+..++.+|.++.|+|...+++++-.+|.|.|||.++...+...... .-+|.+..|-+..+++++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~---~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS---EVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec---ccchhhheeeeccceEEEecCCceEEEEe
Confidence 345568999999999999999999999999999999987555544333 33899999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 283 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~ 283 (498)
..+++....+. .|+.-|.+++.+|...++++++.|-.|++||.+.. .+.+.+.+|.-.|.+++
T Consensus 84 ynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 84 YNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred cccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 99988765554 57889999999999999999999999999999764 56778899999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
|+|.+.+.+++++-|++|++|.+. ...+..++.+|..+|+++.+-+. ..+|++|+.|.+|+|||..+
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------- 216 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------- 216 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-------
Confidence 999999999999999999999998 78888999999999999999764 47999999999999999998
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
..++.++.+|... +....|.| .-.++++|++||+++||+..+-++..
T Consensus 217 ---------------------------k~CV~TLeGHt~N--vs~v~fhp----~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 217 ---------------------------KSCVQTLEGHTNN--VSFVFFHP----ELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred ---------------------------HHHHHHhhccccc--ceEEEecC----CCcEEEEecCCccEEEecCcceehhh
Confidence 4678888898843 33444444 56799999999999999999999888
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
++...-+.|++++-.+.+..++.|.+.|.|.+
T Consensus 264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 88877889999999998888888887776643
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-35 Score=276.22 Aligned_cols=206 Identities=22% Similarity=0.350 Sum_probs=191.8
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..+-+|.++|+.+.|+|+.++|++++.|++||+|.+.+.. ......+|..+|.++.|+|.|-|+|+++.|++.++|.
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccce---eEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 3478999999999999999999999999999999999863 3345569999999999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
.......+++. ||-..|.|+.|+|+..++++|+.|.+|++||+.+|..++.+.+|.++|.+++|
T Consensus 522 ~d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 522 TDHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred cccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 98866555444 67779999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+ |+|.+|++|+.||.|.+||+. .+..+..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+..
T Consensus 586 S-p~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 586 S-PCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred c-CCCceEeecccCCcEEEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 8 799999999999999999998 8899999999999999999999999999999999999999986
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-34 Score=234.69 Aligned_cols=290 Identities=20% Similarity=0.303 Sum_probs=239.2
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
|..+.+|..+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ...+|.+.|.++...-+.++|++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 45688999999999999999999999999999999998886665 457999999999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----CCeEEEEECC-------CCeeeEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLE-------ANKLSLR 271 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----dg~i~vwd~~-------~~~~~~~ 271 (498)
|+++|+....++... +|..+.|+++|++++.... .+.|.++|++ ..++...
T Consensus 80 Dv~tGk~la~~k~~~-----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS-----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred EcCCCcEEEEeecCC-----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 999999887776544 7999999999998877654 4679999998 4566788
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
+..+.+.++.+-|. +.+++|++|..||.|..||++ ++ ..+.....|...|+.+++++|..++++++.|.+-++|
T Consensus 143 I~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred ecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc----cCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 88899999999997 789999999999999999998 54 4555667899999999999999999999999999999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe--
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-- 428 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-- 428 (498)
|+++. ..+++|..... + .+.+++|-...++.|+....
T Consensus 218 D~~tl----------------------------------~v~Kty~te~P---v----N~aaisP~~d~VilgGGqeA~d 256 (327)
T KOG0643|consen 218 DVRTL----------------------------------EVLKTYTTERP---V----NTAAISPLLDHVILGGGQEAMD 256 (327)
T ss_pred eccce----------------------------------eeEEEeeeccc---c----cceecccccceEEecCCceeee
Confidence 99884 34444443322 1 22355666666666543221
Q ss_pred ------------EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 429 ------------VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 429 ------------i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
-++|++-..+.+..+++|-++|++++|+|+|+..++|+.||.|++..+...
T Consensus 257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 223333333567788899999999999999999999999999999877543
No 37
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.5e-34 Score=233.01 Aligned_cols=288 Identities=18% Similarity=0.333 Sum_probs=240.3
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 203 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iw 203 (498)
..+++|...|.+++|+.+|..||+|+.|+++.||+++.. .........+|...|-.++|+| ....+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999877 3444456678888999999998 45789999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
|+..+++........ .=.-+.|+|+|.++++++.|..|.+.|.++.+..... .....+..++
T Consensus 93 d~r~~k~~~~i~~~~-----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~ 154 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG-----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS 154 (313)
T ss_pred EeccCcEEEEeeccC-----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence 999998766554332 3345799999999999999999999999988776554 4556788899
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
|+ .++++++.....|.|.|.... .-+++..+++|.....||.|+|+|++||+|+.|..+.+||+..+-
T Consensus 155 w~-~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi------- 222 (313)
T KOG1407|consen 155 WN-NSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI------- 222 (313)
T ss_pred ec-CCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-------
Confidence 98 777888888888999999987 788999999999999999999999999999999999999998743
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
+++.+..+.-.. ..+.||-||++||+|++|..|-|=++.+|..+..+
T Consensus 223 ---------------------------C~R~isRldwpV------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 223 ---------------------------CERCISRLDWPV------RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred ---------------------------hheeeccccCce------EEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 223333333211 12257779999999999999999999999999999
Q ss_pred ccCCCCeeeeEEcCCCCeEEEEeCC---------CcEEEecCC
Q 010883 444 KYHTSPVRDCSWHPSQPMLVSSSWD---------GDVVRWEFP 477 (498)
Q Consensus 444 ~~h~~~v~~l~~sp~~~~l~s~~~D---------g~i~iw~~~ 477 (498)
+ +.++-..++|+|...+||-+++| |.|+++-++
T Consensus 270 ~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 270 P-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred e-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 7 88999999999999999988765 456666554
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=239.59 Aligned_cols=292 Identities=22% Similarity=0.327 Sum_probs=247.4
Q ss_pred CCccccCCCCceEEEEEcC---CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 123 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~---dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
.+....+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ...+|.+.|....+..+...-++++.|-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhhhhhhhcccch
Confidence 3567789999999999986 88999999999999999988885555 44688899999999998888899999999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCC
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSD 278 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~ 278 (498)
-+|||.-+|.....+. |..-|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.
T Consensus 83 akvw~a~tgdelhsf~-----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhhh-----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 9999999887655544 44479999999999999999999999999998765 45667899999
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
|..+.|+ ...+.|++++.|++||+||.+ +++.+..+. ...+|+++.++++|++|.++ ..+.|.+||..+..
T Consensus 146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~-- 216 (334)
T KOG0278|consen 146 IRTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG-- 216 (334)
T ss_pred ceeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc--
Confidence 9999998 677788888999999999999 888888876 46789999999999876655 45679999998743
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
.++.++.... ..+...+|+...+++|++|..++.||..+++
T Consensus 217 --------------------------------~lKs~k~P~n-------V~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 217 --------------------------------LLKSYKMPCN-------VESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --------------------------------ceeeccCccc-------cccccccCCCceEEecCcceEEEEEeccCCc
Confidence 3333332221 1233577788999999999999999999999
Q ss_pred EEEEe-ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 439 QVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 439 ~~~~~-~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.+..+ ++|.++|.|+.|+|+|...++|+.||+|++|....++..
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99886 899999999999999999999999999999998766543
No 39
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=257.51 Aligned_cols=303 Identities=22% Similarity=0.305 Sum_probs=251.2
Q ss_pred cccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe
Q 010883 111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 190 (498)
..+.+...+|......++.|.+.|..+.|-++...|++|+.|..|++|++..++ ........+..+.|+.+.|.+++++
T Consensus 155 ~d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~ 233 (459)
T KOG0288|consen 155 DDHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKH 233 (459)
T ss_pred CchhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCce
Confidence 367788999999999999999999999999999999999999999999998653 2333344566678999999999999
Q ss_pred EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 010883 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 270 (498)
Q Consensus 191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~ 270 (498)
+++++.|+.+++|++...+...... ||+..|+++.|......+++|+.|.+|++||+....+..
T Consensus 234 ~iAas~d~~~r~Wnvd~~r~~~TLs----------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLRLRHTLS----------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred EEeecCCCceeeeeccchhhhhhhc----------------ccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence 9999999999999999887655443 788999999999877779999999999999999988876
Q ss_pred EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 271 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 271 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
++. ....+..|+.+ ...+++|..|++|++||.+ ...+......+ +.|+++..++++..|.+++.|.++.+.
T Consensus 298 t~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred ccc-ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeee
Confidence 663 34556777764 5578999999999999998 77777777765 499999999999999999999999999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
|+++.. ....+........ .-.....|||++.|+++|+.||.|+
T Consensus 369 DlRt~e----------------------------------I~~~~sA~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 369 DLRTKE----------------------------------IRQTFSAEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred eccccc----------------------------------EEEEeeccccccc--cccceeEECCCCceeeeccCCCcEE
Confidence 999843 2333322211000 0012235788999999999999999
Q ss_pred EEECCCCcEEEEeccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 431 VYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 431 iwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999988875444 599999999999999999999999994
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6e-36 Score=254.79 Aligned_cols=251 Identities=24% Similarity=0.389 Sum_probs=213.0
Q ss_pred ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883 176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 255 (498)
Q Consensus 176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d 255 (498)
...|.|+.+ |...+++|..|++|+|||..+-.+..... ||++.|.|+.|. .+.|++|+.|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~----------------GHtGSVLCLqyd--~rviisGSSD 256 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILT----------------GHTGSVLCLQYD--ERVIVSGSSD 256 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhh----------------cCCCcEEeeecc--ceEEEecCCC
Confidence 347999988 66779999999999999998866644433 799999999995 5699999999
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883 256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 335 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 335 (498)
.+|++||+++++++.++..|...|..+.|+ +.++++++.|.++.+||+.... .......+.+|...|+.+.|+ .
T Consensus 257 sTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~ 330 (499)
T KOG0281|consen 257 STVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--D 330 (499)
T ss_pred ceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--c
Confidence 999999999999999999999999999997 5699999999999999997443 334556788999999999995 5
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 415 (498)
++|++++.|.+|++|++.+ ...+.++.+|....... .|
T Consensus 331 kyIVsASgDRTikvW~~st----------------------------------~efvRtl~gHkRGIACl------QY-- 368 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTST----------------------------------CEFVRTLNGHKRGIACL------QY-- 368 (499)
T ss_pred ceEEEecCCceEEEEeccc----------------------------------eeeehhhhcccccceeh------hc--
Confidence 6999999999999999988 46778888887433322 22
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCc----------
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP---------- 485 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~---------- 485 (498)
.++++++|+.|.+|++||+..|.++..+++|+.-|.++.| |.+.+++|+.||+|++||+..+..+..+
T Consensus 369 r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv 446 (499)
T KOG0281|consen 369 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV 446 (499)
T ss_pred cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhh
Confidence 6899999999999999999999999999999999999999 6778999999999999999988766332
Q ss_pred cchhceeecee
Q 010883 486 LNKKRIRRRQF 496 (498)
Q Consensus 486 ~~~~~~~~~~f 496 (498)
.+..|+.++||
T Consensus 447 ~hsgRVFrLQF 457 (499)
T KOG0281|consen 447 EHSGRVFRLQF 457 (499)
T ss_pred hccceeEEEee
Confidence 23446666665
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=247.49 Aligned_cols=259 Identities=23% Similarity=0.356 Sum_probs=220.9
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
...+|..+|+.+-|+|+-..+++++.|++|++||..+++.....+ ||+..+.+++|+..|++|+
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr----------------GHt~sv~di~~~a~Gk~l~ 166 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR----------------GHTDSVFDISFDASGKYLA 166 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh----------------ccccceeEEEEecCccEEE
Confidence 345688899999999999999999999999999999998744433 7888999999999999999
Q ss_pred EEeCCCeEEEEECCC-CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 251 AGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
+++.|-.+.+||..+ .+++..+.+|.-.|.+++|- |.+.++++++.|.+|+.|++. .+.++.++.+|.+.|..+
T Consensus 167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecc----cceeEEeccCchHhEEEE
Confidence 999999999999987 45667777999999999998 678999999999999999998 999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
+.+.||.++++++.|.+|++|-+.+.+.. ..++.|......+...-
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k----------------------------------~~lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCK----------------------------------AELREHEHPVECIAWAP 287 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhh----------------------------------hhhhccccceEEEEecc
Confidence 99999999999999999999999885332 23333333222222111
Q ss_pred ---cccc------CCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 410 ---SPVY------STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 410 ---~~~~------s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
.+.. ...+.++.+++.|++|++||+.++.++.++.+|...|.+++|+|.|++|+++.+|+++++||+.+..
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 1110 0135799999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCC
Q 010883 481 EAAP 484 (498)
Q Consensus 481 ~~~~ 484 (498)
....
T Consensus 368 cmk~ 371 (406)
T KOG0295|consen 368 CMKT 371 (406)
T ss_pred eeec
Confidence 6543
No 42
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=240.19 Aligned_cols=300 Identities=22% Similarity=0.340 Sum_probs=238.8
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC------------C---eEEEEEeecCCCceeEEEEEeCCC
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------G---WKIQKDILAKSLRWTVTDTSLSPD 187 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~------------~---~~~~~~~~~~~~~~~v~~~~~sp~ 187 (498)
....+..|++++.+.+|||||.++|+|+.|-.|+|.|++. | ..-..+.....|...|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3456789999999999999999999999999999999871 1 011123345678889999999999
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 188 ~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
...|++++.|++|+++|+........++... ...+|.++.|+|.|.+|++|.....+++||+++-+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q--------------d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------------DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh--------------ccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 9999999999999999997655443333221 12279999999999999999999999999999988
Q ss_pred eeEEEe---ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-ccc-ccEEEEEEcCCCCEEEEEe
Q 010883 268 LSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHL-EGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 268 ~~~~~~---~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~-~~v~~l~~~~~~~~l~s~~ 342 (498)
+...-. +|.+.|+++.|+ +.+++.++++.||.|++||-- ..+++.++. .|. ..|.+..|..++++|++.+
T Consensus 250 cfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred EeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence 754432 689999999998 889999999999999999975 667776664 344 3588999999999999999
Q ss_pred CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
.|..+++|.+.+ ++.+..+.+....... .......|.....|++.
T Consensus 325 ~DS~vkLWEi~t----------------------------------~R~l~~YtGAg~tgrq-~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 325 KDSTVKLWEIST----------------------------------GRMLKEYTGAGTTGRQ-KHRTQAVFNHTEDYVLF 369 (430)
T ss_pred CcceeeeeeecC----------------------------------CceEEEEecCCcccch-hhhhhhhhcCccceEEc
Confidence 999999999988 4566666554221111 11122234445666666
Q ss_pred Eec-CCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 423 GSH-DSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 423 g~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
-.+ .+.+.-||.+++..+..+. +|.+.+..+.-||.++-++||+.|-.+++|--
T Consensus 370 pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 544 5789999999988776664 89999999999999999999999999999964
No 43
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=255.09 Aligned_cols=315 Identities=20% Similarity=0.329 Sum_probs=245.9
Q ss_pred ccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883 116 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHL 191 (498)
Q Consensus 116 ~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l 191 (498)
.+.+|......+.+|+..|.++++.|.|.+|++|+.|.+|++||+..- .....+.....| .|.+++|++.|..|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQI 229 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeE
Confidence 456677788889999999999999999999999999999999998742 112222233344 79999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeE
Q 010883 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSL 270 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~ 270 (498)
++.+.....+|+|-...+.....+..... -......||...++|.+|+|+. ..+++++.||++++||+...+...
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYI----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhh----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 99999999999998776654443322211 1223345899999999999965 478999999999999998765433
Q ss_pred EEe------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc--cEEEEEEcCCCCEEEEEe
Q 010883 271 RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNG 342 (498)
Q Consensus 271 ~~~------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~s~~ 342 (498)
.+. +..-+++.++|+ +++.+||+|..||.|.+|+.+... .......-.+|.. .|++|.|++||++|++-+
T Consensus 306 qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 332 233478899998 889999999999999999986332 2233445567877 899999999999999999
Q ss_pred CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
.|+++++||++... +++..+.+-........| +|||+.++|++
T Consensus 384 ~D~tLKvWDLrq~k---------------------------------kpL~~~tgL~t~~~~tdc----~FSPd~kli~T 426 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFK---------------------------------KPLNVRTGLPTPFPGTDC----CFSPDDKLILT 426 (641)
T ss_pred CCCceeeeeccccc---------------------------------cchhhhcCCCccCCCCcc----ccCCCceEEEe
Confidence 99999999999865 333333333222222223 67779999999
Q ss_pred Eec------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 423 GSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 423 g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
|+. .|.+++||..+.+.++.+......|..+.|+|.-+.|+.++.||.+++|=
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 865 57899999999999999987788899999999999999999999999863
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-34 Score=231.48 Aligned_cols=285 Identities=21% Similarity=0.301 Sum_probs=224.6
Q ss_pred eEEEEEcCC-CCEEEEEE-------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEE
Q 010883 134 AYVSQFSAD-GSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVD 204 (498)
Q Consensus 134 v~~~~~s~d-g~~la~~~-------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd 204 (498)
=+++.|||- .++||.+. ..|++.|.++..+..+...... .....+.+++|++. .+.+++++.||.++|||
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 468899993 23444332 3688999999754444443322 33447999999995 46788899999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
+..... .+.. ...|...|.++.|++ +++.+++++.|++|++|+...++.+.++.+|..-|....
T Consensus 90 ~~~~s~-Pi~~--------------~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 90 LTMPSK-PIHK--------------FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cCCCCc-chhH--------------HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 543221 1111 124777999999998 566788889999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
|+|..+++++++|.|+++++||++. .++.+. +..|...|.++.|+. +.+.+++|+.|+.|++||+++..
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~---~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------ 224 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRS---PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR------ 224 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecC---CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc------
Confidence 9999999999999999999999982 344444 888999999999987 66789999999999999999864
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVA 441 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~ 441 (498)
.++..+.+|... +.++.++|. ...+||+++.|-+++|||...+ ..+.
T Consensus 225 ---------------------------~pl~eL~gh~~A--VRkvk~Sph---~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 225 ---------------------------TPLFELNGHGLA--VRKVKFSPH---HASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred ---------------------------ccceeecCCceE--EEEEecCcc---hhhHhhhccccceEEecccccchhhhh
Confidence 556677777743 334444443 4578999999999999998854 4566
Q ss_pred EeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecC
Q 010883 442 ALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEF 476 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~ 476 (498)
+...|..-|..+.|++..+ ++|++++|+.++||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6778999999999999644 9999999999999984
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=255.49 Aligned_cols=244 Identities=24% Similarity=0.403 Sum_probs=208.4
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
.+|..+.|.|+|+.|++|+..|.+.+|+..+-...... ..|..+|.++.|+++|.++++|+.+|
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil----------------QaHDs~Vr~m~ws~~g~wmiSgD~gG 160 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL----------------QAHDSPVRTMKWSHNGTWMISGDKGG 160 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh----------------hhhcccceeEEEccCCCEEEEcCCCc
Confidence 37999999999999999999999999997432221111 15788999999999999999999999
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 336 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 336 (498)
.|++|+.+-.........|...|++++|+ +++..|++++.||+|+|||.. ..+....+.+|.-.|.+++|+|...
T Consensus 161 ~iKyWqpnmnnVk~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~----~~kee~vL~GHgwdVksvdWHP~kg 235 (464)
T KOG0284|consen 161 MIKYWQPNMNNVKIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFR----MPKEERVLRGHGWDVKSVDWHPTKG 235 (464)
T ss_pred eEEecccchhhhHHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEecc----CCchhheeccCCCCcceeccCCccc
Confidence 99999987655433333455999999999 578889999999999999998 6677778899999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883 337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 416 (498)
Q Consensus 337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 416 (498)
+|++++.|..|++||.++ +.++.++.+|. .++... .|+++
T Consensus 236 LiasgskDnlVKlWDprS----------------------------------g~cl~tlh~HK--ntVl~~----~f~~n 275 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRS----------------------------------GSCLATLHGHK--NTVLAV----KFNPN 275 (464)
T ss_pred eeEEccCCceeEeecCCC----------------------------------cchhhhhhhcc--ceEEEE----EEcCC
Confidence 999999999999999998 46666777776 334444 45568
Q ss_pred CcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCC
Q 010883 417 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 417 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+++|++++.|..++++|+++.+.+.++++|...|+++.|+|-.. +|++|+.||.|..|.+...+.
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc
Confidence 99999999999999999999999999999999999999999665 889999999999999984443
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-34 Score=268.82 Aligned_cols=312 Identities=15% Similarity=0.144 Sum_probs=214.6
Q ss_pred cccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC--CCCCeEEEEECCCeEE
Q 010883 125 WPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVH 201 (498)
Q Consensus 125 ~~l~-~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~s~d~~i~ 201 (498)
+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+...+... . +...-.++.+. ..+..-.+.+..+.+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~---~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---V---AEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---c---cccccchhhhhhhhccccCcccccccccc
Confidence 3445 899999999999999999999999999999987642211 0 00011111111 1111111111111110
Q ss_pred EEECCCCceecccc--ccc-cccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883 202 IVDVGSGTMESLAN--VTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 278 (498)
Q Consensus 202 iwd~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (498)
=-.....+...... ++. ...-.+.+.....||.+.|.++.|+.++ +|++++.|.+|++|++...+++..+ .|...
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~Hndf 411 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDF 411 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCe
Confidence 00000000000000 000 0000011222345899999999999766 7999999999999999999998877 89999
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
|+|++|+|.|.++|++|+-||.|+||++ ....+..+..-..-|++++|.|||++.+.|+.+|.+++|+....+..
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI-----~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSI-----SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeec-----CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 9999999999999999999999999999 45666666666789999999999999999999999999999875432
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 437 (498)
... .+..-... .....+..+.+.|. +...|++.+.|..|+|||.+..
T Consensus 487 ~~~-----------------------------~I~~~~~Kk~~~~rITG~Q~~p~---~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 487 SDF-----------------------------HIRLHNKKKKQGKRITGLQFFPG---DPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred Eee-----------------------------eEeeccCccccCceeeeeEecCC---CCCeEEEecCCCceEEEeccch
Confidence 221 11111111 11123445555543 3346888889999999999999
Q ss_pred cEEEEeccCC--CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 438 EQVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 438 ~~~~~~~~h~--~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+++..|+++. ..-....|+.||++|+++++|..|++|++.....
T Consensus 535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence 9999998654 3345678999999999999999999999865543
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=243.52 Aligned_cols=248 Identities=20% Similarity=0.316 Sum_probs=220.7
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
...+|.+.|.++++.|.+.++++|+.|++|+|||+.+++...... ||...|..+++++-..|++
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt----------------Ghi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT----------------GHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------------chhheeeeeeecccCceEE
Confidence 456888999999999999999999999999999999998765543 6777899999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (498)
+++.|+.|+.||++.++.++.+.+|-+.|.|++.+ |.-..|++|+.|.++++||+| ....+..+.+|..+|..+.
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVM 284 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEE
Confidence 99999999999999999999999999999999998 677899999999999999999 8899999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
+.|-...+++|+.|++|++||++. ++...++..|..... +
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~a----------------------------------gkt~~tlt~hkksvr------a 324 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRA----------------------------------GKTMITLTHHKKSVR------A 324 (460)
T ss_pred eecCCCceEEecCCceEEEeeecc----------------------------------CceeEeeecccceee------E
Confidence 999888899999999999999998 455566666653222 2
Q ss_pred cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.+..|....+|+++.|. |+-|++..|..+..+.+|...|++++.+.|+ ++++|+++|.+.+||...+..
T Consensus 325 l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 325 LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 24556778888888876 9999999999999999999999999998776 789999999999999987754
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-34 Score=229.21 Aligned_cols=250 Identities=23% Similarity=0.348 Sum_probs=218.2
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
....++++|..+.|+-||+|.++++.|.+|++|+...+.++.... +|...|..++.+.|+..|+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------ghG~EVlD~~~s~Dnskf~ 75 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------GHGHEVLDAALSSDNSKFA 75 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------------CCCceeeeccccccccccc
Confidence 446778899999999999999999999999999999988776655 6777999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (498)
+|+.|..|.+||+++|+..+++.+|.+.|+.+.|+ .+...+++|+.|.++++||.+.. ..+|++.+......|.++.
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSID 152 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcccC--CCCccchhhhhcCceeEEE
Confidence 99999999999999999999999999999999998 88899999999999999999855 5678888888889999998
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
.+ +..|++|+.||+++.||++.+. ....+-+|+ ..+
T Consensus 153 v~--~heIvaGS~DGtvRtydiR~G~----------------------------------l~sDy~g~p--------it~ 188 (307)
T KOG0316|consen 153 VA--EHEIVAGSVDGTVRTYDIRKGT----------------------------------LSSDYFGHP--------ITS 188 (307)
T ss_pred ec--ccEEEeeccCCcEEEEEeecce----------------------------------eehhhcCCc--------cee
Confidence 85 5689999999999999999843 333334443 123
Q ss_pred cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCC--eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
..||+|++.+++++-|+++++.|-.+|++++.+++|... -.+++++.....+++|+.||.|++||+.......
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 467889999999999999999999999999999999754 3466788778899999999999999998776543
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.7e-33 Score=238.00 Aligned_cols=293 Identities=20% Similarity=0.272 Sum_probs=237.5
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC---CeEEEEECCCeE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIV 200 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~s~d~~i 200 (498)
+..--.|.+.|.++... ++.+++|+.||.+++||.... ... ...+|.++|.+++|.-.. ..+++++.|.++
T Consensus 98 pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred ccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 34445689999999988 789999999999999998753 333 446888899988885433 469999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--------------- 265 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~--------------- 265 (498)
++|.++.++........ ..||...|.++...++|..+++|+.|..|.+|+.++
T Consensus 172 ~Lw~~~~~~~~~~~~~~------------~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKV------------CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred EEEEecCchhhhhHHhH------------hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence 99999877643222111 127999999999999999999999999999999322
Q ss_pred ----------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883 266 ----------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 335 (498)
Q Consensus 266 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 335 (498)
+.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+. .+..+..+.+ ...++++..+|..
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLS 312 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEee----cccceeeeec-CcceeEeeccccc
Confidence 134566779999999999973 6789999999999999998 6666666653 4678999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 415 (498)
++|++|+.|..|++||.++.... -....+.+|.. .+..+.++|.
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs-------------------------------~v~~s~~gH~n--wVssvkwsp~--- 356 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGS-------------------------------VVSQSLIGHKN--WVSSVKWSPT--- 356 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCc-------------------------------eeEEeeecchh--hhhheecCCC---
Confidence 99999999999999999985421 23456777774 4445556665
Q ss_pred CCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
+...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..|++||.|.+|+|+.-..
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 66788999999999999999987 999999999999999997 555899999999999987543
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-31 Score=224.90 Aligned_cols=295 Identities=20% Similarity=0.295 Sum_probs=237.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC--CCeEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHI 202 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~--d~~i~i 202 (498)
..+....+.|.++.|+++|.+|++++.|.+++|||..++.....+. .+...|..++|......++.++. |.+|+.
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCCceEE
Confidence 4455578899999999999999999999999999999997666543 34447888999888877777776 889999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
.++.+.+.++.+. ||...|.+++.+|-+..+++++.|++|++||++..++...+... .-..+
T Consensus 85 Lsl~dNkylRYF~----------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~ 146 (311)
T KOG1446|consen 85 LSLHDNKYLRYFP----------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIA 146 (311)
T ss_pred EEeecCceEEEcC----------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcce
Confidence 9999999887776 79999999999998899999999999999999988876665433 33456
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
+| +|.|-++|++.....|++||+|..+........+. +.....+.|.|+|||++|+.+...+.+++.|.-.
T Consensus 147 Af-Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~------- 218 (311)
T KOG1446|consen 147 AF-DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD------- 218 (311)
T ss_pred eE-CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-------
Confidence 77 48899999999888999999997643222222222 3456789999999999999999999999999876
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
+....++..+....... ...+|+||++++++|+.||+|++|++++++.+.
T Consensus 219 ---------------------------G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 219 ---------------------------GTVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ---------------------------CcEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 34455555554332221 233677899999999999999999999999999
Q ss_pred Eecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 442 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 442 ~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
.+++ +.+++.++.|+|...+++|++ ..+.+|=....+
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDA 306 (311)
T ss_pred EecCCCCCCccccccCCceeeeeecC--ceEEEEeccccc
Confidence 9998 789999999999988888875 468888665443
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.8e-32 Score=262.62 Aligned_cols=254 Identities=28% Similarity=0.427 Sum_probs=213.6
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
..+...|.++.|+|+|+++++++.++.+++|+..+.+...... ..+|...|.+++|+|++++++++
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~--------------l~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE--------------LSGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc--------------ccccccceeeeEECCCCcEEEEe
Confidence 3446689999999999999999999999999996655200111 12688899999999999999999
Q ss_pred eCCCeEEEEEC-CCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883 253 SSDDCIYVYDL-EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 331 (498)
Q Consensus 253 ~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 331 (498)
+.|++|++||+ ..+..++.+.+|...|++++|+ +.++++++|+.|++|++||++ .++++..+.+|.+.|++++|
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~----~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVR----TGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEecc----CCeEEEeeeccCCceEEEEE
Confidence 99999999999 5558889999999999999998 566999999999999999998 78999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883 332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411 (498)
Q Consensus 332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
++++++|++++.|+.|++||+.+.... .+..+.++.... ...+.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~--------------------------------~~~~~~~~~~~~----~~~~~ 340 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL--------------------------------CLKLLSGAENSA----PVTSV 340 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee--------------------------------eeecccCCCCCC----ceeEE
Confidence 999999999999999999999984310 233344443221 22333
Q ss_pred ccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCC---eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP---VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.|+|++.++++++.|+.+++||+..+..+..+.+|... +.+...++.+.++++++.|+.|++|++.+...
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 67779999999999999999999999999999988774 44555678899999999999999999997543
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=260.72 Aligned_cols=294 Identities=18% Similarity=0.265 Sum_probs=247.6
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883 127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~ 206 (498)
+..-+++|..++|+|...+++++-..|.|++||..-+..+.+ ...|.++|..++|+|++.++++|+.|-.|+||+..
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 344578899999999999999999999999999988755553 45788999999999999999999999999999999
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 286 (498)
+.++..... ||-+-|..+.|++.-.+|++++.|.+|+||+..+++++..+.+|.-.|.|..|+
T Consensus 82 ~rrclftL~----------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh- 144 (1202)
T KOG0292|consen 82 TRRCLFTLL----------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH- 144 (1202)
T ss_pred cceehhhhc----------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-
Confidence 888754433 788899999999999999999999999999999999999999999999999998
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccC-------------------------CCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNV-------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 341 (498)
|...+++++|-|.+|+|||+..... .......+.+|..+|+.++|+|.-..|++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 7788999999999999999852211 111235678999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883 342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 421 (498)
+.|..|++|.+...+ .-.+.+..+|.. .+..+. |.|...+++
T Consensus 225 ~DDRqVKlWrmnetK--------------------------------aWEvDtcrgH~n--nVssvl----fhp~q~lIl 266 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETK--------------------------------AWEVDTCRGHYN--NVSSVL----FHPHQDLIL 266 (1202)
T ss_pred CCcceeeEEEecccc--------------------------------ceeehhhhcccC--CcceEE----ecCccceeE
Confidence 999999999987522 123444556653 333444 445789999
Q ss_pred EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
+.++|++|+|||+...+.+.+++...+.-+.++-+|..++++.| .|+-+.+|.+...
T Consensus 267 SnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred ecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 99999999999999999999998778899999999999877766 4566677877643
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-33 Score=254.00 Aligned_cols=249 Identities=22% Similarity=0.289 Sum_probs=220.8
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
+...|.++.|+|...+++++-.+|.|.|||.++......+.+.+. ||.+..|.+..+++++|+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~----------------PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV----------------PVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc----------------chhhheeeeccceEEEecC
Confidence 555899999999999999999999999999999887766665432 7999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-
Q 010883 255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG- 333 (498)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 333 (498)
|..|+||+.++++.+..+.+|.+.|++++.+ |..-+++++|+|-+|++||.. ....+.+++.+|...|.+++|+|
T Consensus 76 D~~IrVfnynt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred CceEEEEecccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCC
Confidence 9999999999999999999999999999998 666789999999999999986 35678889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
|.+.+++++-|++|++|.+.. ..+..++++|......+......
T Consensus 152 D~ntFaS~sLDrTVKVWslgs----------------------------------~~~nfTl~gHekGVN~Vdyy~~g-- 195 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGS----------------------------------PHPNFTLEGHEKGVNCVDYYTGG-- 195 (794)
T ss_pred CccceeeeeccccEEEEEcCC----------------------------------CCCceeeeccccCcceEEeccCC--
Confidence 568999999999999999987 35567788888555554433222
Q ss_pred CCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
|..+|++|+.|..|+|||..+..++.++.+|...|..+.|+|.-++++||+.||+|+||+-.+-..
T Consensus 196 --dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 196 --DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred --CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 567999999999999999999999999999999999999999999999999999999999776543
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-32 Score=241.24 Aligned_cols=302 Identities=21% Similarity=0.248 Sum_probs=235.7
Q ss_pred ccCCCCCccccCCCCceEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883 118 YLPVNGPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 196 (498)
Q Consensus 118 ~~~~~~~~~l~~h~~~v~~~~~s~dg~~-la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~ 196 (498)
+|.......+....+.|.+++|||...+ +|+.+ .-.+.||+..+....... ......|.++.|-.||++|++|..
T Consensus 13 ~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~---srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 13 YWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTF---SRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred hhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhH---HhhccceeEEEeecCCeEEEccCC
Confidence 3344444455556789999999997643 44443 356999998775333322 233447999999999999999999
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEecc
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH 275 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 275 (498)
.|.|+|+|..+........ +|+.++..+.|+| ++..|++|+.|+.+++||+.+......+.+|
T Consensus 89 sG~V~vfD~k~r~iLR~~~----------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLY----------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred cCcEEEeccccHHHHHHHh----------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 9999999966533322222 5778999999999 5567888899999999999999887788999
Q ss_pred CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 276 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
++.|.|.+|+|.+++++++|+.||.|++||++.. ...+..+ .|..+|..+.+-|.|..|++++. ..+++||+.++
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~---~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL---TSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG 227 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccC---CceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC
Confidence 9999999999888999999999999999999822 2445555 48999999999999999998875 47999999864
Q ss_pred CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
. +.+..+..|....+.. .+..++..|++|+-|+.|++||+.
T Consensus 228 ~---------------------------------qll~~~~~H~KtVTcL------~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 228 G---------------------------------QLLTSMFNHNKTVTCL------RLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred c---------------------------------eehhhhhcccceEEEE------EeecCCceEeecccccceEEEEcc
Confidence 3 3333334354333332 344478999999999999999999
Q ss_pred CCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 436 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
+.+.+..+. ..++|.+++.+|+++.++.|-.||.+.+=+....+++.+
T Consensus 269 ~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~ 316 (487)
T KOG0310|consen 269 NYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSK 316 (487)
T ss_pred ceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCc
Confidence 999998887 678999999999999999999999998886655554443
No 55
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-32 Score=252.68 Aligned_cols=287 Identities=21% Similarity=0.288 Sum_probs=244.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..+.+|.+.|.+++||.|...+++|+ .+.|+||+..+.+++...... .+.+..|.|.++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence 46789999999999999998888875 568999999998777764322 688999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cee--eE-----EE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKL--SL-----RI 272 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-----~~~--~~-----~~ 272 (498)
+.+........ .|.+.|.+++.+||++.+++|+.|.+|++||..- +.. +. +.
T Consensus 441 laS~~l~Eti~----------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 441 LASASLVETIR----------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eehhhhhhhhh----------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 99877654443 4778999999999999999999999999999742 111 11 11
Q ss_pred eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
..-...|.|+.++ |++.+|+++--|.+|+||-+. +-+....+.+|.-||.++..+||++.++||+.|.+|++|-+
T Consensus 505 Lel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 505 LELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred EeccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 2446789999998 899999999999999999998 77888899999999999999999999999999999999998
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 432 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 432 (498)
.-+ .+-+.+-+|.. .++.. .|-|....+.+++.|+.|+-|
T Consensus 580 dFG----------------------------------DCHKS~fAHdD--Svm~V----~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 580 DFG----------------------------------DCHKSFFAHDD--SVMSV----QFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ccc----------------------------------hhhhhhhcccC--ceeEE----EEcccceeEEEecCcceEEee
Confidence 873 44444555553 23333 344578899999999999999
Q ss_pred ECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 433 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 433 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
|-...+.+..+.+|...|++++.+|+|.+++|++.|..|++|+-..
T Consensus 620 Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 620 DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred chhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999999999999999765
No 56
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.7e-32 Score=264.40 Aligned_cols=321 Identities=19% Similarity=0.177 Sum_probs=236.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCC--------e-EEEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVY 193 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~--~dg~i~vw~~~~~--------~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 193 (498)
.-+..+...|++++.+|||..+|||+ .|+.++||+.+.- . ..........|.+.|+|+.|+|||++||+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 34556677799999999999999999 8999999997531 1 11223345678899999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccccccccCc--cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGL--DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 271 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~ 271 (498)
|++|+.|.||..........+......... --......+|+..|.+++|+|++.+|++++.|++|.+||..+.+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 999999999998741100111000000000 001112347999999999999999999999999999999999999999
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc------ccEEEEEEcCCCCEEEEEeC--
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYLISNGK-- 343 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l~s~~~-- 343 (498)
+.+|.+.|..+.| +|-|++|++-+.|++|++|++. .....+.+..+. ..+..+.|+|||.+|++...
T Consensus 167 l~~H~s~VKGvs~-DP~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 167 LRGHQSLVKGVSW-DPIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eecccccccceEE-CCccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999999999999 5899999999999999999976 444444444432 34788999999999997643
Q ss_pred --CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc-CC-----
Q 010883 344 --DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY-ST----- 415 (498)
Q Consensus 344 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~----- 415 (498)
-..+.|.+-.+ ...-..+-+|... +....|+|.+ ..
T Consensus 242 ~~~~~~~IieR~t----------------------------------Wk~~~~LvGH~~p--~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 242 GGKSTIAIIERGT----------------------------------WKVDKDLVGHSAP--VEVVRFNPKLFERNNKNG 285 (942)
T ss_pred CCcceeEEEecCC----------------------------------ceeeeeeecCCCc--eEEEEeChHHhccccccC
Confidence 22455555433 1223344555542 2233344431 11
Q ss_pred ---CC----cEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCcc
Q 010883 416 ---GQ----KYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL 486 (498)
Q Consensus 416 ---~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 486 (498)
.. ..+|+|+.|++|-||.....+++.... -....|.+++|+|||..|+.+|.||+|.+..+...+--.+..
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls 364 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALS 364 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccC
Confidence 11 168899999999999998888776553 345789999999999999999999999999998776544433
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.3e-32 Score=226.59 Aligned_cols=252 Identities=24% Similarity=0.344 Sum_probs=214.1
Q ss_pred EEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC
Q 010883 168 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 247 (498)
Q Consensus 168 ~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~ 247 (498)
......+|.+.|..+.|+|+|.+||+|+.|..|.+|++.... .....+ .+|++.|..+.|.+|++
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~l--------------kgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVL--------------KGHSGAVMELHGMRDGS 103 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeee--------------ccccceeEeeeeccCCC
Confidence 344567899999999999999999999999999999975432 222221 27999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883 248 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327 (498)
Q Consensus 248 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 327 (498)
.|++++.|.+|+.||.++++.++++..|..-|+.+.-+..+..++.+++.||++++||+| +...+.++. ..-.++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R----~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR----KKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec----ccchhhccc-cceeEE
Confidence 999999999999999999999999999999999998776677899999999999999998 666666654 356789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 407 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (498)
++.|..++..+++|+-|+.|++||++. +....++.+|....+.+
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~----------------------------------~d~~~~lsGh~DtIt~l-- 222 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRK----------------------------------NDGLYTLSGHADTITGL-- 222 (338)
T ss_pred EEEecccccceeeccccCceeeecccc----------------------------------CcceEEeecccCceeeE--
Confidence 999999999999999999999999988 46677888888544433
Q ss_pred EeccccCCCCcEEEEEecCCeEEEEECCC----CcEEEEeccCC----CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVS----GEQVAALKYHT----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~----~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
..+++|.++.+-+.|.++++||++. .+++..+.+|. .....++|+|+++.+.+++.|..+++||....
T Consensus 223 ----sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 223 ----SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ----EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 5677999999999999999999875 34577777654 34567899999999999999999999998764
No 58
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=250.30 Aligned_cols=330 Identities=18% Similarity=0.193 Sum_probs=257.5
Q ss_pred cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883 115 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 194 (498)
Q Consensus 115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 194 (498)
+...........+.+|+.+|+++.|+..|.+||+|+.|+.|.|||+-... -.....+|...|+..-|..+.++|++.
T Consensus 91 if~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~---Gl~rL~GHkd~iT~~~F~~~~~~lvS~ 167 (888)
T KOG0306|consen 91 IFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE---GLFRLRGHKDSITQALFLNGDSFLVSV 167 (888)
T ss_pred eeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce---eeEEeecchHHHhHHhccCCCeEEEEe
Confidence 33333345667889999999999999999999999999999999997652 234557889999999999989999999
Q ss_pred ECCCeEEEEECCCCceecccccc--------------------------cc---cc-----------------------C
Q 010883 195 SMSPIVHIVDVGSGTMESLANVT--------------------------EI---HD-----------------------G 222 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~--------------------------~~---~~-----------------------~ 222 (498)
+.|+.|++||+++..+....... +. .+ .
T Consensus 168 sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred ccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 99999999999876542111000 00 00 0
Q ss_pred ccccc---------------------------------------------------------------------------
Q 010883 223 LDFSA--------------------------------------------------------------------------- 227 (498)
Q Consensus 223 ~~~~~--------------------------------------------------------------------------- 227 (498)
+.+..
T Consensus 248 i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~d 327 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFD 327 (888)
T ss_pred eEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEE
Confidence 00000
Q ss_pred ---------------------------------------cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 010883 228 ---------------------------------------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268 (498)
Q Consensus 228 ---------------------------------------~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 268 (498)
....||...|.+++++.+...+++|+ .++|.+|+..+.++
T Consensus 328 v~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kc 406 (888)
T KOG0306|consen 328 VTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKC 406 (888)
T ss_pred EEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcce
Confidence 00026888899999998887666664 56899999999999
Q ss_pred eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 348 (498)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~ 348 (498)
++++... .+.+..|. |.++++++|...|.+.+||+. ....+....+|.+.|+.++.+||+..+++|+.|.+|+
T Consensus 407 iRTi~~~--y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdla----S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 407 IRTITCG--YILASKFV-PGDRYIVLGTKNGELQVFDLA----SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred eEEeccc--cEEEEEec-CCCceEEEeccCCceEEEEee----hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE
Confidence 9998654 88999998 788999999999999999998 7778888889999999999999999999999999999
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 428 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 428 (498)
+||+......+.. ...+..+. |.....+..-..+..+||||++|+++=-|++
T Consensus 480 fWdf~l~~~~~gt---------------------------~~k~lsl~-~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 480 FWDFKLVVSVPGT---------------------------QKKVLSLK-HTRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred EEeEEEEeccCcc---------------------------cceeeeec-cceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 9998753321100 01111111 1111222223345578889999999999999
Q ss_pred EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 429 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 429 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
|+||-+.+.+....+.||.-||.|+..|||+++++|||.|..|+||-++-++...
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence 9999999999999999999999999999999999999999999999998776543
No 59
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-32 Score=229.70 Aligned_cols=307 Identities=20% Similarity=0.294 Sum_probs=245.2
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|++.|+.++.......+.+++.|.+.+||.+++|.++.. ..+|.+.|+++.|++.+.++++++.|++.+||
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHH
Confidence 346789999999999998889999999999999999999977664 46899999999999999999999999999999
Q ss_pred ECC------CCceecccc----c---ccccc-----------CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 010883 204 DVG------SGTMESLAN----V---TEIHD-----------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 259 (498)
Q Consensus 204 d~~------~~~~~~~~~----~---~~~~~-----------~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~ 259 (498)
... ......-.. . .+... .+..+.....+|...|.+..|...|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 721 110000000 0 00000 01111222357899999999999999999999999999
Q ss_pred EEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE
Q 010883 260 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 339 (498)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 339 (498)
+||+++++++..+.+|....+.++-+ |..+++++.+.|-+.++||.+ ..-..+..|++|.+.|+++.|..+. .++
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred eeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-cee
Confidence 99999999999999999999999886 788999999999999999998 3456778999999999999998764 589
Q ss_pred EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883 340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419 (498)
Q Consensus 340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 419 (498)
+|+.|.+|++||++++. .++.++...+....+ +.+..+.+
T Consensus 373 SgSDDrTvKvWdLrNMR---------------------------------splATIRtdS~~NRv-------avs~g~~i 412 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMR---------------------------------SPLATIRTDSPANRV-------AVSKGHPI 412 (481)
T ss_pred ecCCCceEEEeeecccc---------------------------------CcceeeecCCcccee-------EeecCCce
Confidence 99999999999999975 344455444432222 33446778
Q ss_pred EEEEecCCeEEEEECCCCcEEEEe-----ccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCCC
Q 010883 420 IYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 420 l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~~ 479 (498)
|+.--.+..|++||+.. ..+..+ ++|..-|+|++|..+-+ -|++|+.|..+.=|+++..
T Consensus 413 IAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 88888899999999954 444443 48999999999987665 6899999999999998764
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=254.89 Aligned_cols=282 Identities=24% Similarity=0.343 Sum_probs=244.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
.+...+.|..|. ..++++++.|++|++|+..++..+.. ...+|.+.|.++++..-+.+|++|+.|.++++||..++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 467889999998 56799999999999999999855443 36789999999999887899999999999999999999
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 288 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 288 (498)
++...+. +|...|.++... ...+++|+.|.+|++|++.++..+..+.+|.++|+++...
T Consensus 282 ~C~~~l~----------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--- 340 (537)
T KOG0274|consen 282 ECTHSLQ----------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--- 340 (537)
T ss_pred cEEEEec----------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---
Confidence 9877765 677788888775 4468889999999999999999999998899999999985
Q ss_pred CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 368 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 368 (498)
+.++++|+.|++|++||+. ..+++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 341 ~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------------ 403 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------------ 403 (537)
T ss_pred CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh------------
Confidence 7799999999999999998 89999999999999999988665 899999999999999999831
Q ss_pred cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc-CC
Q 010883 369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-HT 447 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~ 447 (498)
+++.++.+|...... ....+++|++++.|+.|++||..+++++..+.+ |.
T Consensus 404 ---------------------~c~~tl~~h~~~v~~--------l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~ 454 (537)
T KOG0274|consen 404 ---------------------KCIHTLQGHTSLVSS--------LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHV 454 (537)
T ss_pred ---------------------hhhhhhcCCcccccc--------cccccceeEeccccccEEEeecccCceeeeeccCCc
Confidence 466677777654422 122678999999999999999999999999998 67
Q ss_pred CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
+.|..+++. ...+++++.||.+++||+..+....
T Consensus 455 ~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 455 GGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 899999886 5678999999999999999887654
No 61
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=215.08 Aligned_cols=253 Identities=19% Similarity=0.241 Sum_probs=210.3
Q ss_pred EeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC
Q 010883 169 DILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 247 (498)
Q Consensus 169 ~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~ 247 (498)
.....+|.+.+..++|+|- |..||+++.|..|++|+...+....... ..+.+|+..|.+++|+|.|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~------------vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT------------VLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE------------eccccchheeeeeeecCCCc
Confidence 3445678889999999998 8999999999999999988533211111 11236888999999999999
Q ss_pred EEEEEeCCCeEEEEECCCC--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883 248 ELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 325 (498)
Q Consensus 248 ~l~~g~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 325 (498)
+|++++.|.++.||.-..+ +++..+.+|...|.|++|+ .+|++||+++.|..|-||.+...+ ...+...++.|...
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqD 152 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQD 152 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeecccccc
Confidence 9999999999999987654 5678899999999999998 899999999999999999987332 56788899999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883 326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 405 (498)
Q Consensus 326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
|..+.|+|...+|++++.|.+|++|+-.... .-..+.++.+|..
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------------------------------dW~c~~tl~g~~~----- 196 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------------------------------DWECVQTLDGHEN----- 196 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCC-------------------------------CeeEEEEecCccc-----
Confidence 9999999999999999999999999876311 1367888888874
Q ss_pred EEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe-ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
..|+.+|++.|..|++++.|++|+||...+ .+ ..|..++..++|. ...|+|++.|+.|+++.-...
T Consensus 197 -TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 197 -TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred -eEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence 345667888999999999999999998652 22 2478899999998 458999999999999987744
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-32 Score=255.43 Aligned_cols=285 Identities=21% Similarity=0.313 Sum_probs=227.5
Q ss_pred ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883 176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 255 (498)
Q Consensus 176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d 255 (498)
...|..++|+|...+++++-..|.|++||.+-+.++..+. .|.++|..++|+|++.++++|+.|
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd----------------eHdGpVRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD----------------EHDGPVRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh----------------ccCCccceeeecCCCCeEEecCCc
Confidence 3478899999999999999999999999999887654433 588899999999999999999999
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883 256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 335 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 335 (498)
-.|+||+..+.+++.++.+|.+.|..+.|+ +.--+++++|+|.+|+||+.. +.+++..+.+|...|.|..|+|..
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwq----sr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQ----SRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeecc-CCCceEEEccCCCeEEEEecc----CCceEEEEecCceEEEeeccCCcc
Confidence 999999999999999999999999999997 777899999999999999998 899999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC-ceEEEEccCceeEEEEEEEeccccC
Q 010883 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
..+++++-|.+|++||+.........+.+. +..++ ..+....+.-..+ -....+.+|.. .+.-+ +|.
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~---e~~~~---~~~~~~dLfg~~DaVVK~VLEGHDR--GVNwa----Afh 215 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSL---EDQMR---GQQGNSDLFGQTDAVVKHVLEGHDR--GVNWA----AFH 215 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCc---hhhhh---ccccchhhcCCcCeeeeeeeccccc--ccceE----Eec
Confidence 999999999999999998754333221110 00111 1111111221112 22345677773 33333 455
Q ss_pred CCCcEEEEEecCCeEEEEECCCCc--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccchhcee
Q 010883 415 TGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIR 492 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~ 492 (498)
|.-.++++|+.|..|++|.+..-+ .+-+..+|.+.|.++-|+|...+++|.|.|++|+|||+.... ..+..|..
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrre 291 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRE 291 (1202)
T ss_pred CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeecc
Confidence 567899999999999999986554 355677999999999999999999999999999999997643 33444555
Q ss_pred eceec
Q 010883 493 RRQFY 497 (498)
Q Consensus 493 ~~~f~ 497 (498)
..+||
T Consensus 292 ndRFW 296 (1202)
T KOG0292|consen 292 NDRFW 296 (1202)
T ss_pred CCeEE
Confidence 55665
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-29 Score=203.89 Aligned_cols=290 Identities=22% Similarity=0.296 Sum_probs=228.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCC------C------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER------G------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~------~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~ 198 (498)
...|.+++|+|.|.+.|+|+...+++|..... + -+.......+.|.+.|.|.+|+|+|.+|++|+.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 56799999999999999999999998875432 1 01112234567899999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCeeeEEEe
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----g~~l~~g~-~dg~i~vwd~~~~~~~~~~~ 273 (498)
+|++...+...+...-.- ++| .-|.+.|..++|..+ |.+|++++ .|-.|++-|..+++....+.
T Consensus 112 ~ik~l~fn~dt~~~~g~d------le~-----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHD------LEF-----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred eEEEEecccccccccCcc------eee-----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 999988765443222111 111 137779999999753 45677655 46778999999999999999
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-------ccccEEEEEEcCCCCEEEEEeCCCc
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQA 346 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~dg~ 346 (498)
+|.+.|.++-- -++-++++|+.|.+|++||++ ....+.++.. ....|.++++.|.|++|++|..|..
T Consensus 181 ghtghilalys--wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 181 GHTGHILALYS--WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred CCcccEEEEEE--ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 99999988742 458899999999999999998 4455544432 2356999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 426 (498)
..+||++. ++.++.|..|...... ..|||...|+++++.|
T Consensus 255 c~lydirg----------------------------------~r~iq~f~phsadir~------vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 255 CMLYDIRG----------------------------------GRMIQRFHPHSADIRC------VRFSPGAHYLLTCSYD 294 (350)
T ss_pred eEEEEeeC----------------------------------CceeeeeCCCccceeE------EEeCCCceEEEEeccc
Confidence 99999998 5778888888744333 3677899999999999
Q ss_pred CeEEEEECCCC----cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 427 SCVYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 427 g~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 295 ~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999998532 1234445699999999999999999999999999999875
No 64
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4e-31 Score=220.68 Aligned_cols=301 Identities=16% Similarity=0.236 Sum_probs=235.0
Q ss_pred CccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCe------------EEEEEeecCCCceeEEEEEeCC-CCC
Q 010883 124 PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQR 189 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp-~~~ 189 (498)
......|.+.|+++.+.+ .|+|+++|+.||.|.|||+++.. .+.......+|+..|.++.|-| |.-
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 345577999999999998 58999999999999999997642 1112233467889999999999 566
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~dg~i~vwd~~~~ 266 (498)
.+.+++.|.+++|||..+-+....++++. .|.+-+++|- ..++|+|..+-.|++.|+.+|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~-----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEG-----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecCc-----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 77788999999999999988766666554 6888888883 457888889999999999999
Q ss_pred eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-----------CCCceeEEeccccccEEEEEEcCCC
Q 010883 267 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-----------VKGKPAGVLMGHLEGITFIDSRGDG 335 (498)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~v~~l~~~~~~ 335 (498)
.....+.+|.+.|.++.|+|...-.|++|+.||.|++||++... .....+..-..|.+.|..++|+.++
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence 99999999999999999998888889999999999999998321 0111222345688899999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 415 (498)
.++++++.|..+++|+..++........ ..+..-..+.. -... + .
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g--------------------------~~~~n~~~~~~--~~~~---~----~ 303 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNTLREFG--------------------------PIIHNQTTSFA--VHIQ---S----M 303 (397)
T ss_pred hhhhhccCccceEEeecccCcccccccc--------------------------cccccccccce--EEEe---e----c
Confidence 9999999999999999988654332110 11111111110 0011 1 1
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
+...++.--.++.+.++++-++..+..+..|-..|.+.++-|+-+...++..|+.|..|-.
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 2333444445688999999999999999999999999999999999999999999999987
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=234.98 Aligned_cols=297 Identities=12% Similarity=0.133 Sum_probs=237.1
Q ss_pred CCccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
-...|.+|.+.|+|++=+|.. ..+|+|+.||.|+|||+....++. ....|.+.|..|++.. ..+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--cceEEecCCccee
Confidence 344679999999999999988 889999999999999999864444 4467888999999976 7788999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
.|.++.. ....+. ..+.+..+.-+..+..+++++.+ |.|||.....++..+.-....|.+
T Consensus 133 ~wk~~~~-p~~til-----------------g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 133 QWKIDGP-PLHTIL-----------------GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eeeccCC-cceeee-----------------ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeE
Confidence 9998763 111111 11245566666667778888754 999999999999999888889999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
+.|+|....+|+++..|+.|.+||++ ...++..+. ..-.-+.|+|+|.+-.+++++.|..++.||++...
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R----~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----- 262 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLR----QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----- 262 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecc----cCCccceee-eeccccceecCccccceeeccccccceehhhhhhc-----
Confidence 99998888999999999999999999 666655443 23445789999988889999999999999999864
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
.++..+.+|. ......+|||.|+-+++|+.|.+|+||.+..+....
T Consensus 263 ----------------------------~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 263 ----------------------------RPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred ----------------------------ccchhhcccc------eeEEEeccCCCcchhccccccceEEEeecCCCcchh
Confidence 5556666665 233455788899999999999999999998776544
Q ss_pred Eec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccch
Q 010883 442 ALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNK 488 (498)
Q Consensus 442 ~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~ 488 (498)
.+. .-...|.++.||-|.+++++||+|+.|++|.....+...+...+
T Consensus 309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~r 356 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPR 356 (433)
T ss_pred hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChh
Confidence 432 12357999999999999999999999999998877666554443
No 66
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.5e-30 Score=246.30 Aligned_cols=278 Identities=18% Similarity=0.206 Sum_probs=211.4
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----------EeecCCCceeEEEEEeCC-CCCeEEEEECCC
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----------DILAKSLRWTVTDTSLSP-DQRHLVYASMSP 198 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~----------~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~ 198 (498)
|-..|.....++|+..+++++.+.....|+...+..+.. .....+|.+.|++++|+| ++++|++++.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 455667778888877778887787778888665432211 112457889999999999 889999999999
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTS 277 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 277 (498)
+|++||+.++....... .......+|...|.+++|+|++ .+|++|+.|+.|+|||+.+++.+..+..|..
T Consensus 99 tIkIWdi~~~~~~~~~~---------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNIS---------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEEecCCCccccccC---------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 99999997653211100 0011123688899999999975 6899999999999999999999888989999
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc-EEEEEEcCCCCEEEEEe----CCCcEEEEeC
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG----KDQAIKLWDI 352 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~~----~dg~i~iwd~ 352 (498)
.|.+++|+ +++.+|++++.|+.|++||++ .+..+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+
T Consensus 170 ~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 170 QITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred ceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 99999998 789999999999999999998 77788888888765 45677899888887654 4789999999
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEE
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV 431 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~i 431 (498)
++... .+.....+.. .....+.|++++++|++++. |+.|++
T Consensus 245 r~~~~---------------------------------p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 245 RKMAS---------------------------------PYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred CCCCC---------------------------------ceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 87431 1111111111 11223467779999998874 999999
Q ss_pred EECCCCcEEEEecc-CCCCeeeeEEcCCC
Q 010883 432 YDLVSGEQVAALKY-HTSPVRDCSWHPSQ 459 (498)
Q Consensus 432 wd~~~~~~~~~~~~-h~~~v~~l~~sp~~ 459 (498)
||+.+++.+..+.. +..++..++|.|.-
T Consensus 287 wdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 287 FELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEeeCCceEEEeeccCCCCCcceEecccc
Confidence 99999988776653 45678899998864
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-30 Score=240.09 Aligned_cols=278 Identities=20% Similarity=0.273 Sum_probs=225.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~ 214 (498)
.-++|+ ..+.||+|. +..|++|+..++... .+.... ...|+++.|+++|.+|++|..+|.|.|||..+.+.....
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~-~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVT-ELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceE-EeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 346788 445777774 447999999988532 222222 668999999999999999999999999999876654443
Q ss_pred cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEeCCCCCEEE
Q 010883 215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~ 293 (498)
.. .|...|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..+.|+ +++.+++
T Consensus 256 ~~---------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lA 317 (484)
T KOG0305|consen 256 RG---------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLA 317 (484)
T ss_pred cC---------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeec
Confidence 31 267789999998 66799999999999999998876655 77899999999998 8999999
Q ss_pred EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEe--CCCcEEEEeCCCCCCccccccCcccccc
Q 010883 294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
+|+.|+.+.|||.. ...++..+..|...|.+++|+| ....||+|+ .|+.|++||..+.
T Consensus 318 SGgnDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g--------------- 378 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG--------------- 378 (484)
T ss_pred cCCCccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---------------
Confidence 99999999999996 7788899999999999999999 456788765 6999999999874
Q ss_pred cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE--EecCCeEEEEECCCCcEEEEeccCCC
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDSCVYVYDLVSGEQVAALKYHTS 448 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~ 448 (498)
..+........ + .++.|++..+-|++ |..++.|.||+..+.+++..+.+|..
T Consensus 379 -------------------~~i~~vdtgsQ---V----csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 379 -------------------ARIDSVDTGSQ---V----CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred -------------------cEecccccCCc---e----eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 33333333222 2 22345556654544 34578999999999999999999999
Q ss_pred CeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 449 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 449 ~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
.|..++++|||..+++|+.|.++++|++-+..
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 99999999999999999999999999998763
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7e-31 Score=232.10 Aligned_cols=306 Identities=17% Similarity=0.174 Sum_probs=238.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--------------ec-CCCceeEEEEEeCCCC
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ 188 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~--------------~~-~~~~~~v~~~~~sp~~ 188 (498)
...+..|.-+|.|++++||.++.++++.+++|.-|++.++....... .. ..|...+.+++.+|||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 35667899999999999999999999999999999998885331111 11 2677889999999999
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 010883 189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 268 (498)
Q Consensus 189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 268 (498)
+|||+|+.|..|.||+..+.+....+. +|.+.|.+++|-.....|++++.|+.|++|++.....
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc----------------ccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 999999999999999999987655533 6888999999998888899999999999999999988
Q ss_pred eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 348 (498)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~ 348 (498)
+.++.+|.+.|..|... ..++.+.+|+.|+++++|++. ......+.++.+.+-|++|-. ..++++|+.+|.|.
T Consensus 279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIA 351 (479)
T ss_pred HHHHhCCccceeeechh-cccceEEeccccceeEEEecc-----ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEE
Confidence 88999999999999986 667777788899999999993 455567788888999999985 46899999999999
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 428 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 428 (498)
+|++.+..........+.. .. .+.. ........+++..|...++++|+.+|.
T Consensus 352 LWs~~KKkplf~~~~AHgv---------------------~~------~~~~-~~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGV---------------------IP------ELDP-VNGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred EeeecccCceeEeeccccc---------------------cC------Cccc-cccccceeeeEecccCceEEecCCCCc
Confidence 9999885433222110000 00 0000 000123344455668899999999999
Q ss_pred EEEEECCCC----cEEEEeccCCCCeeeeEEcCCCCeEE-EEeCCCcEEEecCCCCCC
Q 010883 429 VYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 429 i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~-s~~~Dg~i~iw~~~~~~~ 481 (498)
|++|-+..+ +++..+. -.+-|++++|+++|+.|+ ..+..-.+--|-......
T Consensus 404 vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~~ 460 (479)
T KOG0299|consen 404 VRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSGK 460 (479)
T ss_pred eEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeeccc
Confidence 999999887 4455554 568899999999999554 445666666666554433
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.7e-30 Score=264.44 Aligned_cols=274 Identities=15% Similarity=0.199 Sum_probs=212.8
Q ss_pred CCeEEEEECCCCeEEEEE--eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccC
Q 010883 152 ASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
+|.+++|+...-...... .....|...|.+++|+|++++|++|+.|+.|+||+.......... .+ .....
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~----~~----~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD----IH----YPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc----cc----cceEE
Confidence 677888888764322111 112347889999999999999999999999999997642110000 00 00000
Q ss_pred CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc
Q 010883 230 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 308 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 308 (498)
..+...+.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||+|++||++
T Consensus 529 -~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~- 606 (793)
T PLN00181 529 -LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN- 606 (793)
T ss_pred -ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-
Confidence 01234789999987 578999999999999999999999999999999999999987788999999999999999998
Q ss_pred ccCCCceeEEeccccccEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883 309 LNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
.+..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++...
T Consensus 607 ---~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~------------------------------- 651 (793)
T PLN00181 607 ---QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK------------------------------- 651 (793)
T ss_pred ---CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------------------------------
Confidence 66677777644 678999995 579999999999999999998632
Q ss_pred CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC------CcEEEEeccCCCCeeeeEEcCCCCe
Q 010883 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS------GEQVAALKYHTSPVRDCSWHPSQPM 461 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~sp~~~~ 461 (498)
..+..+.+|..... .+. |. ++.+|++++.|+.|++||+.. ..++..+.+|...+..++|+|++++
T Consensus 652 --~~~~~~~~h~~~V~--~v~----f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 652 --LPLCTMIGHSKTVS--YVR----FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred --ccceEecCCCCCEE--EEE----Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence 12344555553322 222 22 578999999999999999974 3577889999999999999999999
Q ss_pred EEEEeCCCcEEEecCCCC
Q 010883 462 LVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 462 l~s~~~Dg~i~iw~~~~~ 479 (498)
|++|+.||.|++|+....
T Consensus 723 lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 723 IATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999997644
No 70
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=220.09 Aligned_cols=312 Identities=16% Similarity=0.160 Sum_probs=222.1
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI 202 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~i 202 (498)
-.|.+|...|++++||.||++||+++.|++|+||++..-... ++.+...-..+..+.+.|+||-+-++.... ...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 467899999999999999999999999999999998752110 011111111124788999999887666554 457999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
|.+...+--.........+.+.| ...|...+..+-.-.++.+|++++.|..|.+|++. |+.+..+......-...
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEeeecccCCCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 98753322111110001111111 12466678888888889999999999999999998 88888887766667778
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCcccc----CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLN----VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
+.+ |+|+++++++..-.|++|.+--.. ..-..+..+.+|...|..++|+|+...+++.+.||.++|||..-....
T Consensus 235 avS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 235 AVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 887 899999999999999999874211 022345678899999999999999999999999999999998752111
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEc--cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK--GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
.. +. ..+.... .+....... .+..+|.|+.||.+. ...+++|..++
T Consensus 314 ~q-------------------Dp--------k~Lk~g~~pl~aag~~p~----RL~lsP~g~~lA~s~-gs~l~~~~se~ 361 (420)
T KOG2096|consen 314 GQ-------------------DP--------KILKEGSAPLHAAGSEPV----RLELSPSGDSLAVSF-GSDLKVFASED 361 (420)
T ss_pred CC-------------------Cc--------hHhhcCCcchhhcCCCce----EEEeCCCCcEEEeec-CCceEEEEccc
Confidence 00 00 0111110 000001111 235677899887764 45699999999
Q ss_pred CcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 437 GEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 437 ~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
|+...+++ .|...|.+++|+++|++++|++ |..+++..
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 98877775 7999999999999999999997 67788876
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.7e-29 Score=232.55 Aligned_cols=247 Identities=30% Similarity=0.458 Sum_probs=209.8
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
.+|..+|++++|+|++++|++++.+|.|.+|++.+++...... .|...+..+.|+|++++|+++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK----------------GHTGPVRDVAASADGTYLASG 69 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe----------------cCCcceeEEEECCCCCEEEEE
Confidence 4677899999999999999999999999999998775322221 355578899999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
+.+|.|++||+.+++....+..|...+.++.|+ +++.++++++.||.|++||++ .......+..|...+.++.|+
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred cCCCeEEEEEcCcccceEEEeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECC----CcEEEEEeccCCCcEEEEEEc
Confidence 999999999999988888888999999999998 567888888889999999997 677788888899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883 333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (498)
|++.++++++.|+.|++||++.. +.+..+..+.. . ..+..
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~----------------------------------~~~~~~~~~~~--~----i~~~~ 184 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTG----------------------------------KCVATLTGHTG--E----VNSVA 184 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEcccc----------------------------------ccceeEecCcc--c----cceEE
Confidence 99999998888999999999853 33333443331 1 22335
Q ss_pred cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
++|+++.+++++.++.|++||+.+++.+..+..|...|.+++|+|++.++++++.||.|++|++....
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 67789899999999999999999999999998899999999999998899988889999999998644
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=3.2e-30 Score=221.45 Aligned_cols=286 Identities=16% Similarity=0.229 Sum_probs=220.1
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
....|..+|.+++.+|+.+++++|+.|..-.+|++.++....... +|...|+++.|+.+|.+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt----------------gHKDSVt~~~FshdgtlLA 122 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT----------------GHKDSVTCCSFSHDGTLLA 122 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec----------------CCCCceEEEEEccCceEEE
Confidence 456788899999999999999999999999999999988433322 6888999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (498)
+|..+|.|+||...++.....+...-..+.-+.|+ |.+.+|++|+.||.+.+|.+. +....+.+.+|..++++=.
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip----~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIP----SQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEec-ccccEEEeecCCCcEEEEECC----CcceeeEecCCCCCccccc
Confidence 99999999999999999888887677788899998 689999999999999999997 6678889999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc------------cccCCCCceEEEEccC
Q 010883 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR------------DLKHPCDQSVATYKGH 398 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 398 (498)
|.|+|+.++++..||+|++||+.+.+......... .....++.+...+. .+....++.+....+.
T Consensus 198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred ccCCCceEEEEecCceEEEEecCCCceeEEecccc---cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence 99999999999999999999999875443332100 00011111111111 1111122223333210
Q ss_pred ce-----eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883 399 SV-----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 399 ~~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
.. ......+.-+..+|..-.+.|+|+-||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.||.|+.
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEe
Confidence 00 00111122223355566789999999999999999888877776 888999999998 679999999999999
Q ss_pred ecCCCCCCC
Q 010883 474 WEFPGNGEA 482 (498)
Q Consensus 474 w~~~~~~~~ 482 (498)
||..++...
T Consensus 353 wDaRtG~l~ 361 (399)
T KOG0296|consen 353 WDARTGQLK 361 (399)
T ss_pred eeccccceE
Confidence 999988643
No 73
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=2.8e-30 Score=239.51 Aligned_cols=338 Identities=22% Similarity=0.262 Sum_probs=236.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-----------CCeEEEEECCCeEEE
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVHI 202 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~s~d~~i~i 202 (498)
..++.|++....|.+...|..++|||+..-.++.+....-.|...|..+.--|- ..-+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 457889999999999999999999999886666555555556667777765541 124789999999999
Q ss_pred EECCCCceecccc----------ccccccCccc-----------cccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883 203 VDVGSGTMESLAN----------VTEIHDGLDF-----------SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 261 (498)
Q Consensus 203 wd~~~~~~~~~~~----------~~~~~~~~~~-----------~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw 261 (498)
|++..+....... +........+ .....-+....+.+++.+|+|++||+|..-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9998633211111 0000000000 001111345689999999999999999999999999
Q ss_pred ECCCCeeeEEEeccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC--CE
Q 010883 262 DLEANKLSLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RY 337 (498)
Q Consensus 262 d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~ 337 (498)
++...+....+..|...|.|+.|+-| ...+|++++.|..|.|||+. ....++.++.+|...|+++.|.-+| ..
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccccceeEEEEeecCCceE
Confidence 99999888889999999999999844 35789999999999999985 2445666777777777777776555 45
Q ss_pred EEEEeCCCcEEEEeCCCCCCccccccCcc-cccccceeecCCc------------CcccccCCCCceEEEEccCcee-EE
Q 010883 338 LISNGKDQAIKLWDIRKMSSNASCNLGFR-SYEWDYRWMDYPP------------QARDLKHPCDQSVATYKGHSVL-RT 403 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~ 403 (498)
+++++.|+.|.+--.++......+..... .....+..|...| +.+.+....++..+.|++.... ..
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 66666665554332221111111100000 0000011111111 1222223335667777765433 45
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.+..... |.|.||++.+.|.++.++|..+|+++.+..+|...|+.+.|.+|.+.|++.+.||.|.||.++.
T Consensus 644 lIKv~lD----PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 644 LIKVILD----PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eEEEEEC----CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 5555544 4799999999999999999999999999999999999999999999999999999999999875
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=221.26 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=234.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
...|.++...|..+.+++|+.|..+.++|...+. .+....+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh---hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 3468888888888899999999999999998873 3346688999999999999999999999999999999876553
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEeCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDES 288 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~ 288 (498)
..... .|..+|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.+++.+|+ |+
T Consensus 296 ~~~~~----------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pD 358 (506)
T KOG0289|consen 296 PTSSR----------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PD 358 (506)
T ss_pred ccccc----------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CC
Confidence 22221 4667999999999999999999999999999999998766643 22458999997 89
Q ss_pred CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 368 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 368 (498)
|.+|.+|..||.|++||+. ....+..|.+|.++|..++|+.+|-+|++++.|+.|++||+|+...
T Consensus 359 gLifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----------- 423 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----------- 423 (506)
T ss_pred ceEEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----------
Confidence 9999999999999999998 7778889999999999999999999999999999999999998542
Q ss_pred cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC--CCcEEEEeccC
Q 010883 369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV--SGEQVAALKYH 446 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h 446 (498)
+.++...... .+.. ..|.+.|.+|++++.|=+|++++-. +..++..+..|
T Consensus 424 -----------------------~kt~~l~~~~-~v~s----~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 424 -----------------------FKTIQLDEKK-EVNS----LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred -----------------------cceeeccccc-ccee----EEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 2222222111 1222 2455589999999888777777744 45677788889
Q ss_pred CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
.+..+.+.|....++++++|.|..++++.+
T Consensus 476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccceeeecccceEEeeccchhheEEeec
Confidence 999999999999999999999999998865
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3e-31 Score=235.77 Aligned_cols=254 Identities=19% Similarity=0.266 Sum_probs=210.7
Q ss_pred EeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883 169 DILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 246 (498)
Q Consensus 169 ~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g 246 (498)
.....+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.+...+. +|..+|.+++|+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~----------------gH~k~Vrd~~~s~~g 270 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK----------------GHRKPVRDASFNNCG 270 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh----------------cchhhhhhhhccccC
Confidence 345678999999999999 899999999999999999876 55555444 788899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883 247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 326 (498)
Q Consensus 247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v 326 (498)
..+++++.|+.|++||+++|+++.++. ....++|+.|.|.+.+.|++|+.|+.|+.||+| .++.+..+..|.+.|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR----s~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR----SGKVVQEYDRHLGAI 345 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc----chHHHHHHHhhhhhe
Confidence 999999999999999999999988873 456789999996666999999999999999999 888999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883 327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 406 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
..+.|-++|+.+++.+.|+.++||+.+...... .+.....|+ .
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-------------------------------~i~~~~~hs----m-- 388 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-------------------------------NIADPEMHT----M-- 388 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccch-------------------------------hhcchhhcc----C--
Confidence 999999999999999999999999998732111 011111111 1
Q ss_pred EEeccccCCCCcEEEEEecCCeEEEEECCCC---cEEEEeccCC--CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
-+....|+++++++-+.|+.|.+|.+... .....+++|. +.-..+.|||||.+|++|+.||.+.+||..+...
T Consensus 389 --P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 389 --PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred --cceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 12245679999999999999999987543 2334566775 4567789999999999999999999999987655
Q ss_pred C
Q 010883 482 A 482 (498)
Q Consensus 482 ~ 482 (498)
.
T Consensus 467 ~ 467 (503)
T KOG0282|consen 467 V 467 (503)
T ss_pred h
Confidence 4
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.2e-31 Score=221.97 Aligned_cols=258 Identities=19% Similarity=0.255 Sum_probs=214.3
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
....+.|..|+|||++|++|+.||.|.+||..+|+...-.+..... ...-+..+|.|+.|+.|...|++|+.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------NFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------ceeecccceEEEeecccHHHhhccCc
Confidence 3446889999999999999999999999999999875544432211 12235668999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 255 DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
||.|++|.+.+|.+++++. .|...|+|+.|+ .++..+++++.|.++++.-+. .++.+..+.+|...|+...|.+
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTD 358 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcC
Confidence 9999999999999999987 899999999998 788889999999999999998 8999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
||.++++++.||+|++|+..+.. ++.+|+.......+.....-|.
T Consensus 359 dG~~iisaSsDgtvkvW~~Ktte----------------------------------C~~Tfk~~~~d~~vnsv~~~PK- 403 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTE----------------------------------CLSTFKPLGTDYPVNSVILLPK- 403 (508)
T ss_pred CCCeEEEecCCccEEEecCcchh----------------------------------hhhhccCCCCcccceeEEEcCC-
Confidence 99999999999999999998843 3444443333333444444443
Q ss_pred CCCCcEEEEEecCCeEEEEECCCCcEEEEecc---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
+...++++...++|+|.++ .|+.+..+.. ..+...+++.+|.|.++...+.|+.++.+.+..++...
T Consensus 404 --npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 404 --NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred --CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 5667888889999999997 6777777752 34567788899999999999999999999998886543
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=210.35 Aligned_cols=278 Identities=14% Similarity=0.130 Sum_probs=215.5
Q ss_pred CCceEEEEEcC-CCCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 131 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
.+.|.+++||| ...++++++.||+||+|+++.. .... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 77899999999 5667779999999999999873 3322 344678889999999999999999999999999999999
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 286 (498)
+...+. .|.++|.++.|-+... .|++|+.|.+|+.||.+...++.++ .-...+.++..-
T Consensus 105 Q~~~v~-----------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-~LPeRvYa~Dv~- 165 (347)
T KOG0647|consen 105 QVSQVA-----------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-QLPERVYAADVL- 165 (347)
T ss_pred Ceeeee-----------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-eccceeeehhcc-
Confidence 765443 3777999999998665 8999999999999999998888777 445667776653
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
..+++++..+..|.+|+++......+.. .....-.+.+++..+|....+.|+-.|.+.|..+......
T Consensus 166 --~pm~vVata~r~i~vynL~n~~te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~-------- 233 (347)
T KOG0647|consen 166 --YPMAVVATAERHIAVYNLENPPTEFKRI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK-------- 233 (347)
T ss_pred --CceeEEEecCCcEEEEEcCCCcchhhhh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--------
Confidence 4578899999999999997322111111 1112345889999988888899999999999998874321
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCcee---EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL---RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
.-.+|+.|+.. ...+-...+.+|.|.-..|++++.||++.+||-.....+...
T Consensus 234 ------------------------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 234 ------------------------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred ------------------------CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc
Confidence 11233333321 111222334456667788999999999999999988889998
Q ss_pred ccCCCCeeeeEEcCCCCeEEEE
Q 010883 444 KYHTSPVRDCSWHPSQPMLVSS 465 (498)
Q Consensus 444 ~~h~~~v~~l~~sp~~~~l~s~ 465 (498)
+.|..+|++++|+.+|.++|-+
T Consensus 290 ~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 290 ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999988765
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.9e-30 Score=208.07 Aligned_cols=245 Identities=18% Similarity=0.253 Sum_probs=200.4
Q ss_pred CCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCC
Q 010883 131 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
.+.++.++|++.. +.+++++.||++++||+... ...+...+.|...|.++.|++ +++.+++++.|++|++|+..-+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 6789999999975 68889999999999996543 234456678888999999999 5567788899999999998776
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
+.+..+. ||...|...+|+| ..+.+++++.|+.+++||++.......+..|...+.|+.|+.-
T Consensus 138 ~Sv~Tf~----------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 138 NSVQTFN----------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred cceEeec----------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence 6554433 6888999999999 6779999999999999999876555558899999999999988
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
+.++|++|+.|+.|+.||++.. ..++..+.+|.-.|..+.|+|.. ..|++++.|=+++|||.....
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---------- 268 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRNL---RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---------- 268 (311)
T ss_pred CCcEEEecCCCceEEEEehhhc---cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----------
Confidence 9999999999999999999844 46788899999999999999964 678999999999999988632
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 434 (498)
..+.++..|.. .+....|++. ++.++|+.+.|+.++||+.
T Consensus 269 -----------------------s~~e~~~~HtE--Fv~g~Dws~~---~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -----------------------SAIETVDHHTE--FVCGLDWSLF---DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------hhhhhhhccce--EEeccccccc---cCceeeecccccceeeecc
Confidence 33444455552 2223334443 6779999999999999984
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=220.47 Aligned_cols=292 Identities=17% Similarity=0.285 Sum_probs=230.4
Q ss_pred CCccccchhhhhhhhhcC-----CCCCccccc---cccccccccccCCCC---CccccCCCCceEEEEEcCCCCEEEEEE
Q 010883 82 KRHLPVSTVKMLAGREGN-----YSGRGRFSA---ADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAGF 150 (498)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~---~~~l~~h~~~v~~~~~s~dg~~la~~~ 150 (498)
+...|......+..+... ++..|++-+ .+++.+.+...+... ..++.+|..+|.-+.||||.++|++|+
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 344455555555544222 255555433 466777777666655 678899999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCC
Q 010883 151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 230 (498)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (498)
.|..+.+||+.+|....... .++...+.+++|.|||..+++|+.|+.|..||++......-... .
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv-r------------ 353 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV-R------------ 353 (519)
T ss_pred chHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-c------------
Confidence 99999999999996655433 34667899999999999999999999999999986543211111 1
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 310 (498)
...|.+++.++||+++++.+.|..|++++.++..... +.....+|++++.+ .+++++++.-.+..+++||+.
T Consensus 354 ---~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS-~d~k~~LvnL~~qei~LWDl~--- 425 (519)
T KOG0293|consen 354 ---DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE--- 425 (519)
T ss_pred ---cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEc-CCCcEEEEEcccCeeEEeecc---
Confidence 1169999999999999999999999999998866543 33556789999998 899999999999999999998
Q ss_pred CCCceeEEecccccc--EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883 311 VKGKPAGVLMGHLEG--ITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~--v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
....+..+.+|... +..-+|-. +..++++|+.|+.|+||+..+
T Consensus 426 -e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s--------------------------------- 471 (519)
T KOG0293|consen 426 -ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS--------------------------------- 471 (519)
T ss_pred -hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC---------------------------------
Confidence 77888888888765 33334543 558999999999999999988
Q ss_pred CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
+.++..+.||. .++..+.|+|+ +...+|+|+.||+|+||-...
T Consensus 472 -gkll~~LsGHs--~~vNcVswNP~---~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 472 -GKLLAVLSGHS--KTVNCVSWNPA---DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -CceeEeecCCc--ceeeEEecCCC---CHHHhhccCCCCeEEEecCCc
Confidence 58899999999 55666677776 788999999999999998653
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-28 Score=205.81 Aligned_cols=252 Identities=20% Similarity=0.265 Sum_probs=201.6
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
....|+++.|+++|.+|++++.|..++|||..+++........ ...+..++|......++.++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk----------------kyG~~~~~Fth~~~~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK----------------KYGVDLACFTHHSNTVIHSST 76 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc----------------cccccEEEEecCCceEEEccC
Confidence 3457999999999999999999999999999999876665533 236778888877777777776
Q ss_pred --CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 255 --DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 255 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
|.+|+..++.+++.++.+.+|...|++++.+ |.++.+++++.|++|++||++ ..++...+.. ..-..++|.
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR----~~~cqg~l~~--~~~pi~AfD 149 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR----VKKCQGLLNL--SGRPIAAFD 149 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEec----CCCCceEEec--CCCcceeEC
Confidence 8899999999999999999999999999999 556899999999999999998 4444444432 333457899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883 333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (498)
|.|-++|++.....|++||+|.... .+..++.-.. ....-...+.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dk--------------------------------gPF~tf~i~~---~~~~ew~~l~ 194 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDK--------------------------------GPFTTFSITD---NDEAEWTDLE 194 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCC--------------------------------CCceeEccCC---CCccceeeeE
Confidence 9999999998888999999998642 2222222211 0001112346
Q ss_pred cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCe---eeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
|||||++|+.++..+.+++.|.-+|..+..+..+...- .+.+|+||++++++|+.||+|++|++.++.....
T Consensus 195 FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 195 FSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred EcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 88899999999999999999999999999988665432 5789999999999999999999999988766543
No 81
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.2e-28 Score=234.18 Aligned_cols=257 Identities=19% Similarity=0.244 Sum_probs=193.6
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCC
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD 256 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg 256 (498)
.|.....++++..+++++.+.....|+...+... ........ .........+|.+.|.+++|+| ++++|++|+.|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~-~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGK-LASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEE--eecccccc-CCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4666667788777888888888888987665321 11111000 0011122357999999999999 889999999999
Q ss_pred eEEEEECCCC-------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 257 CIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 257 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
+|++||+.++ +.+..+.+|...|.+++|+|..+++|++++.|++|++||+. .+..+..+.+|...|.++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSL 174 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEE
Confidence 9999999765 34567889999999999996556899999999999999998 777888889999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
+|+|++.+|++++.|+.|++||+++. ..+..+.+|..... ..+.|
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg----------------------------------~~v~tl~~H~~~~~-~~~~w 219 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDG----------------------------------TIVSSVEAHASAKS-QRCLW 219 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCC----------------------------------cEEEEEecCCCCcc-eEEEE
Confidence 99999999999999999999999873 44555666643211 12333
Q ss_pred ccccCCCCcEEEEEe----cCCeEEEEECCCCc-EEEEeccC-CCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883 410 SPVYSTGQKYIYTGS----HDSCVYVYDLVSGE-QVAALKYH-TSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 480 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~~~ 480 (498)
.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ .||.|++||+..+.
T Consensus 220 ----~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 220 ----AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ----cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 34556666543 47899999998754 44444333 34566678999999999887 59999999998764
No 82
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=231.21 Aligned_cols=257 Identities=18% Similarity=0.238 Sum_probs=190.1
Q ss_pred EECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccc
Q 010883 149 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 227 (498)
Q Consensus 149 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (498)
|+.++.|++|+...... .....+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++..... .... ..
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~-------p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKD-------PQ 118 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cccc-------ce
Confidence 56688999999876532 3345688889999999996 78999999999999999976432100 0000 00
Q ss_pred cCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcC
Q 010883 228 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 306 (498)
Q Consensus 228 ~~~~~h~~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~ 306 (498)
....+|...|.+++|+|++.. |++++.|+.|++||+.+++....+. |...|.+++|+ +++.+|++++.|+.|++||+
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence 012367889999999999875 4688999999999999998777664 66889999998 78999999999999999999
Q ss_pred ccccCCCceeEEeccccccEEEE-----EEcCCCCEEEEEeCCC----cEEEEeCCCCCCccccccCcccccccceeecC
Q 010883 307 RCLNVKGKPAGVLMGHLEGITFI-----DSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 377 (498)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~v~~l-----~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (498)
+ .+..+..+.+|.+.+... .|++++.+|++++.|+ .|+|||++...
T Consensus 197 R----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------------------- 251 (568)
T PTZ00420 197 R----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------------------- 251 (568)
T ss_pred C----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---------------------
Confidence 8 778888899998765432 3468889999988774 79999998632
Q ss_pred CcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--cCCCCeeeeEE
Q 010883 378 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSW 455 (498)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~ 455 (498)
.++..+..+.....+... +. +++|.++++|+.|+.|++|++..+.. ..+. .+..++.+++|
T Consensus 252 ------------~pl~~~~ld~~~~~L~p~-~D---~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f 314 (568)
T PTZ00420 252 ------------SALVTMSIDNASAPLIPH-YD---ESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGF 314 (568)
T ss_pred ------------CceEEEEecCCccceEEe-ee---CCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEE
Confidence 233333222211111111 11 33688999999999999999987643 2232 25678899999
Q ss_pred cCCCC
Q 010883 456 HPSQP 460 (498)
Q Consensus 456 sp~~~ 460 (498)
.|...
T Consensus 315 ~Pkr~ 319 (568)
T PTZ00420 315 LPKQI 319 (568)
T ss_pred ccccc
Confidence 99753
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.2e-29 Score=219.81 Aligned_cols=263 Identities=22% Similarity=0.366 Sum_probs=215.3
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccc---cccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE---IHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l 249 (498)
..|.-+|++++++|++++.++++.+++|.-|++.+++.....-... ...+..+.... .+|...+.+++.++||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCcEE
Confidence 4566689999999999999999999999999999987552221111 00122222222 4799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
++|+.|..|.||+..+.+.+..+.+|.+.|.+++|- ...+.+++++.|+.|++|++. ....+.++.+|.+.|..|
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~----~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSID----QLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehh----HhHHHHHHhCCccceeee
Confidence 999999999999999999999999999999999996 777889999999999999998 777888999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
....-++.+-+|+.|+++++|++.. ..-..|.++........++
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-----------------------------------esqlifrg~~~sidcv~~I- 336 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-----------------------------------ESQLIFRGGEGSIDCVAFI- 336 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-----------------------------------cceeeeeCCCCCeeeEEEe-
Confidence 9988888888899999999999954 3334445554222222221
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cC-----------CCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YH-----------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h-----------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
+...+++|+.+|.|.+|++...+++.+.. +| ...|++++..|...++++|+.+|.|++|.+.
T Consensus 337 ------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 337 ------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 56789999999999999999999887764 23 1278999999999999999999999999999
Q ss_pred CCCCCC
Q 010883 478 GNGEAA 483 (498)
Q Consensus 478 ~~~~~~ 483 (498)
.+-...
T Consensus 411 ~g~r~i 416 (479)
T KOG0299|consen 411 DGLRAI 416 (479)
T ss_pred CCcccc
Confidence 885443
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-28 Score=211.89 Aligned_cols=270 Identities=19% Similarity=0.281 Sum_probs=209.0
Q ss_pred CCCCccccCCCCceEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEE-EeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883 121 VNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASM 196 (498)
Q Consensus 121 ~~~~~~l~~h~~~v~~~~~s~dg---~~la~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~s~ 196 (498)
.+....+.+|.++|.+++|--.. ..|++++.|.++++|..+.+..... .....+|...|-+++..++|..+++|+.
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence 34456788999999988875433 3699999999999999987743322 2234589999999999999999999999
Q ss_pred CCeEEEEECCCCceecccccc---------ccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 197 SPIVHIVDVGSGTMESLANVT---------EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
|..|.||+..+.......... ....+...+.....||+.+|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 999999994432211111111 111112222334568999999999998 6679999999999999999999
Q ss_pred eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCc
Q 010883 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQA 346 (498)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~ 346 (498)
...++. ....++|+.++ +..++|++|+.|..+++||.+... .......+.+|...|.++.|+|.. .+|++++.|++
T Consensus 293 ~~~~~~-~~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 293 LKSTLT-TNKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred ceeeee-cCcceeEeecc-cccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 988875 45678999998 688999999999999999999663 445667899999999999999954 56889999999
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 426 (498)
+++||+|+.. .++..+.+|. ..+....|. ++.+|++|+.|
T Consensus 370 ~klWDvRS~k---------------------------------~plydI~~h~--DKvl~vdW~-----~~~~IvSGGaD 409 (423)
T KOG0313|consen 370 VKLWDVRSTK---------------------------------APLYDIAGHN--DKVLSVDWN-----EGGLIVSGGAD 409 (423)
T ss_pred EEEEEeccCC---------------------------------CcceeeccCC--ceEEEEecc-----CCceEEeccCc
Confidence 9999999843 3566666664 333333343 57799999999
Q ss_pred CeEEEEEC
Q 010883 427 SCVYVYDL 434 (498)
Q Consensus 427 g~i~iwd~ 434 (498)
.+|+|+.-
T Consensus 410 ~~l~i~~~ 417 (423)
T KOG0313|consen 410 NKLRIFKG 417 (423)
T ss_pred ceEEEecc
Confidence 99999864
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=6.5e-29 Score=219.75 Aligned_cols=271 Identities=20% Similarity=0.326 Sum_probs=211.8
Q ss_pred cCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEE-------EeecCCCceeEEEEEeCCCC-CeEEEEECCC
Q 010883 128 DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 198 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~ 198 (498)
..|.+.|+.+..-|.. .++|+++..+.|.|||..+...... .+...+|...-+.++|++.. -.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 5689999999999976 5677788899999999876422222 12445676667889999954 4788999999
Q ss_pred eEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEEEec
Q 010883 199 IVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRILA 274 (498)
Q Consensus 199 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~--~~~~~~~~~~ 274 (498)
.|.+||+...... ...... ....+|...|..++|++ +...|++++.|+.+.|||++ +.++.....+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~----------~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPK----------TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred cEEEEeccccccCCccccce----------EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 9999999765442 111111 11236888999999999 55678899999999999999 5666677789
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~ 353 (498)
|.++|+|++|+|.++.+||+|+.|++|++||+|... .++..+.+|...|.++.|+|+ ...|++++.|+.+.+||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 999999999999999999999999999999999553 488899999999999999996 4678899999999999997
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 433 (498)
....... +. + ..||
T Consensus 348 ~ig~eq~--------------------------------------------------~e---d-------a~dg------ 361 (422)
T KOG0264|consen 348 RIGEEQS--------------------------------------------------PE---D-------AEDG------ 361 (422)
T ss_pred ccccccC--------------------------------------------------hh---h-------hccC------
Confidence 6321110 00 0 0122
Q ss_pred CCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCC
Q 010883 434 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 434 ~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~ 479 (498)
..+++..-.||...|.++.|+|..+ .|+|++.|+.+.||++...
T Consensus 362 --ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 362 --PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred --CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 2345556668999999999999998 6788899999999998743
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=5.8e-28 Score=223.87 Aligned_cols=285 Identities=17% Similarity=0.265 Sum_probs=232.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEE-EEeCC-CCCeEEEEECCCeEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVH 201 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~sp-~~~~l~~~s~d~~i~ 201 (498)
...+.+|+..|..+++.++. .+++++.||++++|+-..+..+. .....++.+-|.. +++.+ ++-.|++|+.|..|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCcceEeecccceEE
Confidence 35678999999999987655 78899999999999986553333 2334445555655 88876 445699999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
+|...+.......+ ||...|.|+....++. +++|+.|.++++|-.. ++...+.+|+..|.+
T Consensus 85 v~~~~~~~P~~~Lk----------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLK----------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWA 145 (745)
T ss_pred EEecCCCCchhhhh----------------ccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheee
Confidence 99998876654443 7888999999888887 9999999999999764 455668899999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
++.. +++ .+++|+.|.+|++|. .++.+.++.+|.+.|+.+++-+++ .|++++.||.|++|++..
T Consensus 146 v~~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------- 209 (745)
T KOG0301|consen 146 VASL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------- 209 (745)
T ss_pred eeec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC-------
Confidence 9987 444 888999999999998 568889999999999999998764 589999999999999954
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
..+..+.+|......+ ....++..++++++|++++||+.. ++.+
T Consensus 210 ----------------------------e~l~~~~ghtn~vYsi------s~~~~~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 210 ----------------------------EVLLEMHGHTNFVYSI------SMALSDGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred ----------------------------ceeeeeeccceEEEEE------EecCCCCeEEEecCCceEEEeecC--ceEE
Confidence 7888889998655444 344578899999999999999965 7888
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.+......|+++.+-++|. |++|+.||.|+||........
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 8875556899999988886 778889999999998755443
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-27 Score=200.90 Aligned_cols=270 Identities=18% Similarity=0.268 Sum_probs=209.6
Q ss_pred EEEEECCCeEEEEECCCC---------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883 146 FVAGFQASQIRIYDVERG---------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 216 (498)
Q Consensus 146 la~~~~dg~i~vw~~~~~---------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 216 (498)
+++|+....|.=+++.-. ..+........|.++|++++. ++.++|+|+.|-+|+|||+..........
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll- 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL- 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee-
Confidence 667777776666665422 122334566789999999998 68999999999999999998765433322
Q ss_pred cccccCccccccCCCCceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEE
Q 010883 217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 294 (498)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~--~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 294 (498)
.|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++..+.+|.+.|+.++.+ |.+.+-++
T Consensus 81 ---------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLALs 144 (362)
T KOG0294|consen 81 ---------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLALS 144 (362)
T ss_pred ---------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEEE
Confidence 3677999999998765 89999999999999999999999999999999999997 88999999
Q ss_pred eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883 295 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 374 (498)
Q Consensus 295 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 374 (498)
.+.|+.+++||+- .++....+. -...-+.+.|+|.|.+++.++.+ .|-+|.+.+.......
T Consensus 145 Vg~D~~lr~WNLV----~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i------------- 205 (362)
T KOG0294|consen 145 VGGDQVLRTWNLV----RGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI------------- 205 (362)
T ss_pred EcCCceeeeehhh----cCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh-------------
Confidence 9999999999996 444333332 12233448999999999988876 4889988763211110
Q ss_pred ecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeE
Q 010883 375 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 454 (498)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 454 (498)
... ..+....|. ++..|++|..|+.|.+||..+..+...+.+|...|.++.
T Consensus 206 ---------------------~~~---~r~l~~~~l-----~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 206 ---------------------ENP---KRILCATFL-----DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA 256 (362)
T ss_pred ---------------------hcc---ccceeeeec-----CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence 000 111111111 688999999999999999999999999999999999998
Q ss_pred E--cCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 455 W--HPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 455 ~--sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
+ .|++.+|+|++.||.|++||+......
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEccccccC
Confidence 4 466789999999999999999877443
No 88
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.7e-27 Score=226.91 Aligned_cols=230 Identities=13% Similarity=0.181 Sum_probs=173.7
Q ss_pred EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-----
Q 010883 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK----- 267 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~----- 267 (498)
|+.++.|++|+......... ..+|...|.+++|+|+ +.+|++|+.|+.|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~----------------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIK----------------LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred CCceeEEEeeecCCCceEEE----------------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 45567888888765432111 1268889999999996 7899999999999999997642
Q ss_pred ---eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883 268 ---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 268 ---~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
++..+.+|...|.+++|+|....+|++++.|++|++||++ .+..+..+. |...|.+++|+|+|.+|++++.|
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~----tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC----CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC
Confidence 3345778999999999985444566899999999999998 555555554 56789999999999999999999
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
+.|+|||+++ +..+..+.+|...... ...+...|++++.+|++++
T Consensus 189 ~~IrIwD~Rs----------------------------------g~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 189 KHMHIIDPRK----------------------------------QEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred CEEEEEECCC----------------------------------CcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEE
Confidence 9999999998 3556667777643222 2223335667899999988
Q ss_pred cCC----eEEEEECCC-CcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 425 HDS----CVYVYDLVS-GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 425 ~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.|+ .|+|||++. ++++..+. .+.+.+......+++.++++|+.|+.|++|++..+
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 774 799999985 56665543 33344444444556889999999999999999765
No 89
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=211.75 Aligned_cols=307 Identities=18% Similarity=0.240 Sum_probs=234.4
Q ss_pred ccccCCCCceEEEEEcCCC--CEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeE
Q 010883 125 WPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 200 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg--~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i 200 (498)
....-+..+|++++|+|.. +++|+|...|.|-+||+.+ .+..........|..+|.++.|+|. -..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 4456789999999999976 4888899999999999953 2334455667788899999999994 4688899999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEeccCCCe
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDV 279 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~v 279 (498)
++-|++++....+...... ...+.++.|+.+...++.+..=|...+||++++.. ...+.-|...|
T Consensus 260 R~~D~~~~i~e~v~s~~~d--------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTD--------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eeeeecchhhHHHhhcCcc--------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 9999998876655554311 12678889998888888888888999999998765 55566788999
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
++++++|....+|++++.|++++|||+|.......++.....|...|.+..|+|.+-.|++.+.|..|+|||..-....
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~- 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK- 404 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-
Confidence 9999999999999999999999999999776555455666779999999999999888999999999999998521110
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
..+..++..... ..-.-..|...|.|+..++++|..-..|-|+|-..++.
T Consensus 405 -----------------------------~~p~~~I~Hn~~-t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 405 -----------------------------DEPLGTIPHNNR-TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred -----------------------------CCccceeeccCc-ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 011111111110 00011124446777999999999999999999988888
Q ss_pred EEEeccCC-CCeeee-EEcCCCCeEEE-EeCCCcEEEecC
Q 010883 440 VAALKYHT-SPVRDC-SWHPSQPMLVS-SSWDGDVVRWEF 476 (498)
Q Consensus 440 ~~~~~~h~-~~v~~l-~~sp~~~~l~s-~~~Dg~i~iw~~ 476 (498)
+..+.... ..|.++ .|+|-+..+++ ++.-|.|+||--
T Consensus 455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 88765333 355554 79999884554 456788888854
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=226.11 Aligned_cols=291 Identities=19% Similarity=0.308 Sum_probs=229.6
Q ss_pred CCCceE---EEEEcC-CCCEEEEEECCCeEEEEECCCCeEE--EE-EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 130 TTSRAY---VSQFSA-DGSLFVAGFQASQIRIYDVERGWKI--QK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 130 h~~~v~---~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~--~~-~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
|...|. .+..++ .+++|++||.||.|++|+....... .. ......|...|+++...-+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 344444 444544 5678999999999999998754221 11 2344678889999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCee--e--------EE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGSSDDCIYVYDLEANKL--S--------LR 271 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~~g~~l~~g~~dg~i~vwd~~~~~~--~--------~~ 271 (498)
|+...+...... ..+.|+..|.|+++ -++...+|+|+-|+.|.+||++++.. + ..
T Consensus 100 W~~~~~~~~c~s--------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 100 WNAHKDNTFCMS--------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred eecccCcchhHh--------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 998766411111 12358889999999 77888999999999999999997722 2 22
Q ss_pred Ee-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 272 IL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 272 ~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
+. ++...|.+++-+ +.+..|++|+..+.+++||.+ ..+.+..+.+|...|..+..++||..+++++.||+|++|
T Consensus 166 l~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred CCCCCccceeeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 23 788899999998 778899999999999999999 888899999999999999999999999999999999999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
|+.. .+++.++..|... .|+...+|+-..+++|+.||.|+
T Consensus 241 dLgq----------------------------------QrCl~T~~vH~e~------VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 241 DLGQ----------------------------------QRCLATYIVHKEG------VWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred eccc----------------------------------cceeeeEEeccCc------eEEEeeCCCcceEEecCCCCcEE
Confidence 9987 4677778777743 34445556778999999999999
Q ss_pred EEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 431 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.=|+.+......+-....+|..+..+...+-+-+++.|+.|+-|.....
T Consensus 281 ~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 281 RTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred ecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999885433333335567888888766665677888999999987543
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=228.06 Aligned_cols=258 Identities=24% Similarity=0.293 Sum_probs=212.7
Q ss_pred cccCCCCCcc-ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883 117 RYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 195 (498)
Q Consensus 117 ~~~~~~~~~~-l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s 195 (498)
+..+...... +.+|.+.|++++|..-+.+|++|+.|.+++|||..+|...... .+|...|.++.. ...++++|+
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l---~gh~stv~~~~~--~~~~~~sgs 308 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL---QGHTSSVRCLTI--DPFLLVSGS 308 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe---cCCCceEEEEEc--cCceEeecc
Confidence 3333333344 8899999999999988899999999999999999999776644 478888988877 456778889
Q ss_pred CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc
Q 010883 196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 275 (498)
Q Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 275 (498)
.|.+|++|++.++....+.. +|.++|.++..+ +.++++|+.|+.|.+||+.+++++..+.+|
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH 370 (537)
T ss_pred CCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC
Confidence 99999999999888766654 477899999997 779999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 276 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
...|.++.+. .. ..+++|+.|++|++||++ .. +++..+.+|.+-+..+.+ .+++|++++.|++|++||...
T Consensus 371 ~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 371 TGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred cceEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeeccc
Confidence 9999999885 32 899999999999999998 66 799999999998877666 567999999999999999988
Q ss_pred CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883 355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 433 (498)
++.+..+.++ ....... .+ ....+++++.||.+++||
T Consensus 443 ----------------------------------~~~~~~~~~~~~~~v~~l------~~--~~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 443 ----------------------------------GECLRTLEGRHVGGVSAL------AL--GKEEILCSSDDGSVKLWD 480 (537)
T ss_pred ----------------------------------CceeeeeccCCcccEEEe------ec--CcceEEEEecCCeeEEEe
Confidence 3566666663 2211111 11 136789999999999999
Q ss_pred CCCCcEEEEeccCC
Q 010883 434 LVSGEQVAALKYHT 447 (498)
Q Consensus 434 ~~~~~~~~~~~~h~ 447 (498)
+.+++.+..+-.+.
T Consensus 481 l~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 481 LRSGTLIRTLLSTD 494 (537)
T ss_pred cccCchhhhhhhcc
Confidence 99999887774343
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.1e-26 Score=194.15 Aligned_cols=279 Identities=15% Similarity=0.165 Sum_probs=214.3
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
...|..+.|+|.++.|++++.||.+++|++..... ...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 67899999999999999999999999999987622 22234666999999987 55688999999999999998876
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 290 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (498)
..+. .|..+|.|+.+++-...+++|+.|++|++||.........+ .....|.++..+ ++
T Consensus 88 ~~ig-----------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v~---g~ 146 (323)
T KOG1036|consen 88 DQIG-----------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDVS---GN 146 (323)
T ss_pred eeec-----------------cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEecc---CC
Confidence 4443 36669999999997778999999999999999875555444 334478888764 77
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
.|++|+.|..|.+||++...... ...-....-.+.++++-|++.-+++++-||.|.+=.+.......
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~----------- 213 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ----------- 213 (323)
T ss_pred EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh-----------
Confidence 89999999999999998443221 11112234568899999998889999999999887666531111
Q ss_pred cceeecCCcCcccccCCCCceEEEEccCce---eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 447 (498)
..-..|+.|.. ...+.-...+++|+|--..+++|+.||.|.+||+.+.+.+..+....
T Consensus 214 -------------------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 214 -------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred -------------------hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 11223333332 12233334455666677889999999999999999999999998777
Q ss_pred CCeeeeEEcCCCCeEEEEeC
Q 010883 448 SPVRDCSWHPSQPMLVSSSW 467 (498)
Q Consensus 448 ~~v~~l~~sp~~~~l~s~~~ 467 (498)
..|.+++|+.+|..||.++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 88999999999999999874
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=210.05 Aligned_cols=295 Identities=12% Similarity=0.160 Sum_probs=229.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEEEEECCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~ 207 (498)
...+.|+++.|+|...+|++|+.|++++||.++.. .-..+....-...+|.+.+|.|+|. .+++++.....+.||+.+
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 45678999999999999999999999999998743 2122222223345899999999998 888999999999999998
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
.+...+..+....+ ..+.....++++++|+..+..|.|.+....+++.+..+ .-.+.|..++|+ .
T Consensus 290 ak~~k~~~~~g~e~-------------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fs-S 354 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEE-------------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFS-S 354 (514)
T ss_pred cccccccCCCCccc-------------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEEe-c
Confidence 88765554332221 15677888999999999999999999999999988877 456889999998 7
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc-cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
++..|++++.+|.|.+||++ ...++..+..... .-++++.++++.+||+|+..|.|.|||..+......
T Consensus 355 dsk~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~------ 424 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN------ 424 (514)
T ss_pred CCcEEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC------
Confidence 88899999999999999998 6677777764322 235678889999999999999999999776221110
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--CCeEEEEECCCCcEEEEec
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~ 444 (498)
.+++..+.. +...+.++.|++|..+||.+|. +..+++-.+.+......+.
T Consensus 425 ----------------------PkPik~~dN------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP 476 (514)
T KOG2055|consen 425 ----------------------PKPIKTVDN------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP 476 (514)
T ss_pred ----------------------CCchhhhhh------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence 123333222 2233445578889999998876 6789999988877666664
Q ss_pred c---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 445 Y---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 445 ~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
. .-+.|+|++|+|.+.+||.|..+|.|.+|.+.
T Consensus 477 ~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3 23569999999999999999999999999874
No 94
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=8.3e-28 Score=214.69 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=229.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
-.|..-|.++.+|...+.+.||+. |.|+|||+... ..+..+ ........|.++.+.|||+.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL-dcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc-cccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 368888999999999999999975 57999999753 112221 1122334689999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
+..........+.... -.+.+++.+||.+..++++.||.|.|||+.+...++.+.+|.+.+.||..
T Consensus 494 LAapTprikaeltssa--------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSA--------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred ccCCCcchhhhcCCcc--------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 9876543222222111 15788999999999999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
+ ++|..|-+|+-|.+|+.||++ .+..+.... ....|.++...|++.++++|-.++.+.|.......
T Consensus 560 s-~dGtklWTGGlDntvRcWDlr----egrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------- 625 (705)
T KOG0639|consen 560 S-KDGTKLWTGGLDNTVRCWDLR----EGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------- 625 (705)
T ss_pred c-CCCceeecCCCccceeehhhh----hhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc--------
Confidence 8 889999999999999999998 555544332 35779999999999999999999988887766521
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 444 (498)
...+..|. .|+.++.|++-|+++++.+.|+.+..|...-|..+...+
T Consensus 626 ---------------------------kyqlhlhe------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 626 ---------------------------KYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred ---------------------------ceeecccc------cEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 11122222 344555666789999999999999999999999888876
Q ss_pred cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
..++|.++.+|.|.++++||+.|....+|.+
T Consensus 673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5678999999999999999999998888875
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=197.62 Aligned_cols=257 Identities=17% Similarity=0.142 Sum_probs=205.2
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 203 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iw 203 (498)
.-.+|.+.|..+...--|++|||++.|++|+|+.+.++.....+..+.+|.++|..++|.. -|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3467999999999999999999999999999999988766566677889999999999976 79999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-e--eeEEEeccCCC
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-K--LSLRILAHTSD 278 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~-~--~~~~~~~~~~~ 278 (498)
.-.+++........ .|...|++++|-|. |-.|++++.||.|.|.+.... . .......|.-.
T Consensus 86 ke~~g~w~k~~e~~--------------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 86 KEENGRWTKAYEHA--------------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred ecCCCchhhhhhhh--------------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 99888654433322 47779999999984 568999999999999988765 2 22334589999
Q ss_pred eeEEEEeCCC--C-----------CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC----CEEEEE
Q 010883 279 VNTVCFGDES--G-----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYLISN 341 (498)
Q Consensus 279 v~~~~~~~~~--~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----~~l~s~ 341 (498)
|++++|.|.. + ..|++|+.|..|+||+.... .......+.+|.+.|+.++|.|.- .+|+++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9999998642 2 46999999999999998733 334555689999999999999963 579999
Q ss_pred eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883 342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 421 (498)
+.||++.||..+........ ..+ .......++..||..|++|+
T Consensus 230 SqDg~viIwt~~~e~e~wk~----------------------------tll---------~~f~~~~w~vSWS~sGn~La 272 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKK----------------------------TLL---------EEFPDVVWRVSWSLSGNILA 272 (299)
T ss_pred cCCCcEEEEEecCccCcccc----------------------------ccc---------ccCCcceEEEEEeccccEEE
Confidence 99999999998743221110 111 11223456667888999999
Q ss_pred EEecCCeEEEEECC
Q 010883 422 TGSHDSCVYVYDLV 435 (498)
Q Consensus 422 ~g~~dg~i~iwd~~ 435 (498)
+++.|+.|.+|.-.
T Consensus 273 Vs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 273 VSGGDNKVTLWKEN 286 (299)
T ss_pred EecCCcEEEEEEeC
Confidence 99999999999744
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.9e-27 Score=230.51 Aligned_cols=264 Identities=18% Similarity=0.212 Sum_probs=209.3
Q ss_pred CCCceeEEEEEeCCCCCeEEEEE--CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
.++...|.++..+||+..+++|+ .|+.++||+.+.--.. .......+.........|.+.|.|+.|+|||++||
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccch----hhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 44556799999999999999999 8999999997531100 00000001111222346888999999999999999
Q ss_pred EEeCCCeEEEEECCC------------------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883 251 AGSSDDCIYVYDLEA------------------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
+|+.|+.|.||+... .+.+..+.+|...|..++|+ |++.+|++++.|++|.+|+.+ +
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~----t 160 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAK----T 160 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccc----c
Confidence 999999999998772 13567788999999999998 699999999999999999998 7
Q ss_pred CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
.+.+..+.+|.+.|..+.|.|-|++|++-+.|++|++|++.+. +..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw----------------------------------~i~ 206 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW----------------------------------GIE 206 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc----------------------------------eee
Confidence 7899999999999999999999999999999999999997652 333
Q ss_pred EEEccCceeEEEEEEEeccccCCCCcEEEEEec----CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC------C---
Q 010883 393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS------Q--- 459 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~------~--- 459 (498)
+.+..+-...........+.|||||.+|++... -.++.|.+-.+.+.-..|-+|..++.++.|+|. .
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 334333332333445567789999999998744 347889988888888888999999999999982 1
Q ss_pred ----C----eEEEEeCCCcEEEecCCCC
Q 010883 460 ----P----MLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 460 ----~----~l~s~~~Dg~i~iw~~~~~ 479 (498)
. .+|+|+.|++|.||.....
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCC
Confidence 1 6889999999999998443
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6e-27 Score=217.03 Aligned_cols=262 Identities=19% Similarity=0.220 Sum_probs=213.5
Q ss_pred ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883 112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 191 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 191 (498)
+..++.............+...|+++.|+++|++||+|..+|.|.|||..+.+.+.... ..|...|-+++|. +..+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~laW~--~~~l 273 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLAWN--SSVL 273 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEecc--CceE
Confidence 34444444444333444458999999999999999999999999999998875554332 2278899999997 7788
Q ss_pred EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 271 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~ 271 (498)
.+|+.++.|..+|+...+.... . ..+|...|..++|++|+.+||+|+.|+.+.|||....++...
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred EEecCCCcEEEEEEecchhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence 9999999999999987664333 1 126888999999999999999999999999999988889999
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEee--CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE--eCCCcE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAI 347 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~--~~dg~i 347 (498)
+..|.+.|..++|+|....+||+|+ .|+.|++||.. .+..+.... ....|..|.|++..+.|+++ ..++.|
T Consensus 339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 9999999999999999999999976 68999999997 666666554 45789999999998777764 356789
Q ss_pred EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883 348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
.||+..++ ..+..+.+|.... ...++||||..+++|+.|.
T Consensus 414 ~lw~~ps~----------------------------------~~~~~l~gH~~RV------l~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 414 TLWKYPSM----------------------------------KLVAELLGHTSRV------LYLALSPDGETIVTGAADE 453 (484)
T ss_pred EEEecccc----------------------------------ceeeeecCCccee------EEEEECCCCCEEEEecccC
Confidence 99999873 5667778887432 2336778999999999999
Q ss_pred eEEEEECCCC
Q 010883 428 CVYVYDLVSG 437 (498)
Q Consensus 428 ~i~iwd~~~~ 437 (498)
++++|++-..
T Consensus 454 Tlrfw~~f~~ 463 (484)
T KOG0305|consen 454 TLRFWNLFDE 463 (484)
T ss_pred cEEeccccCC
Confidence 9999998764
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-26 Score=195.10 Aligned_cols=247 Identities=19% Similarity=0.272 Sum_probs=185.2
Q ss_pred CCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 173 KSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
......|.+++|||. ..+++.+|.|++||+|+++.. .... + ....|.++|.+++|+.||..++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--k-------------a~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--K-------------AQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--h-------------hhhccCCCeEEEEEccCCceEE
Confidence 344558999999994 456668899999999999863 3322 1 1124677999999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
+|+.|+.+++||+.+++. ..+..|.++|.++.|-+.. -..|++||.|.+|+.||.| ...++.++. ..+.+.++
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQ-LPERVYAA 162 (347)
T ss_pred eeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccC----CCCeeeeee-ccceeeeh
Confidence 999999999999999954 6677999999999997332 2489999999999999999 777777766 34667776
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
..- ..+++++..++.|.+|+++......... .+......++.
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~~-----------------------------------~SpLk~Q~R~v- 204 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFKRI-----------------------------------ESPLKWQTRCV- 204 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhhhh-----------------------------------cCcccceeeEE-
Confidence 653 3578889999999999998743221110 00111112221
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCC--cEEEEeccCC---------CCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHT---------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~---------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
+.-.|....+.|+-+|.+.|..+..+ +.-..|+.|. ..|++++|+|....|+|+|.||++.+||-+.
T Consensus 205 --a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 205 --ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred --EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 11125555699999999999999886 4445566665 2588899999999999999999999999765
Q ss_pred CC
Q 010883 479 NG 480 (498)
Q Consensus 479 ~~ 480 (498)
..
T Consensus 283 r~ 284 (347)
T KOG0647|consen 283 RT 284 (347)
T ss_pred hh
Confidence 43
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=212.35 Aligned_cols=242 Identities=21% Similarity=0.327 Sum_probs=191.9
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
..|++++|+|...+=++....-.+.||+..+......+.- ....+.++.|..||++|++|...|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr----------------Fk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR----------------FKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh----------------hccceeEEEeecCCeEEEccCCcC
Confidence 3799999999665433333346799999877655432221 122699999999999999999999
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-C
Q 010883 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-G 335 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~ 335 (498)
.|+|+|+.+...++.+.+|+.+|..+.|+|.++..|++|++|+.+++||+. .......+.+|++.|.+.+|+|- +
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s----~a~v~~~l~~htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS----TAYVQAELSGHTDYVRCGDISPAND 166 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC----CcEEEEEecCCcceeEeeccccCCC
Confidence 999999887777888899999999999998899999999999999999997 55556689999999999999995 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 415 (498)
..+++|+.||.|++||++... ..+..+....... .. .+-|
T Consensus 167 hivvtGsYDg~vrl~DtR~~~---------------------------------~~v~elnhg~pVe---~v----l~lp 206 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLT---------------------------------SRVVELNHGCPVE---SV----LALP 206 (487)
T ss_pred eEEEecCCCceEEEEEeccCC---------------------------------ceeEEecCCCcee---eE----EEcC
Confidence 578999999999999999842 2334444332222 22 2334
Q ss_pred CCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.|..+++++. ..|+|||+.+|. .+.....|...|+|+++..++..|++++-|+.|++||+.+-
T Consensus 207 sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 207 SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 7888888865 469999999654 45555569999999999999999999999999999996543
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1e-26 Score=216.09 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=149.1
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC---CCCEEEEEeCCCcEEEEeCC
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~~~dg~i~iwd~~ 353 (498)
..+.+++.+ |++++|++|..-|+++||++. .......+..|...|.|+.++. ..++|++++.|.-|.|||+.
T Consensus 460 ~G~R~~~vS-p~gqhLAsGDr~GnlrVy~Lq----~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 460 FGFRALAVS-PDGQHLASGDRGGNLRVYDLQ----ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cceEEEEEC-CCcceecccCccCceEEEEeh----hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 458999998 899999999999999999997 6667778889999999999985 34789999999999999998
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEE-----------EEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-----------TYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
..-........+......+++.....+-+.+....++.+. .+..|.... .....+.++..|..+++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~-~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL-SKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc-ccceEEEeeeCCCcceEEE
Confidence 7544433333333333333333322222333333222221 111111111 0112355667788999999
Q ss_pred EecCCeEEEEECCCCcEEEEec---cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 423 GSHDSCVYVYDLVSGEQVAALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 423 g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
++.|..|+|||+.+|+..+.|+ +|.+....+...|.|-|||+...|.++.++|+..++....
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 9999999999999999999997 4678888999999999999999999999999999886644
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6e-27 Score=192.60 Aligned_cols=253 Identities=17% Similarity=0.157 Sum_probs=206.4
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGREL 249 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l 249 (498)
...+|...|.+++|+-+|..|++|+.|+++.+|+++..+...... ..+|.+.|-.++|+| ....|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~--------------~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV--------------YRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc--------------ccCCCcchhhheeCCCCCcce
Confidence 345677789999999999999999999999999998764322211 236888899999998 55689
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
++++.|.+|++||+.++++...+...... .-++|+ |+++++++++.|..|.+.|.+ +.+.....+ ..-.+.-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~ws-p~g~~~~~~~kdD~it~id~r----~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGEN-INITWS-PDGEYIAVGNKDDRITFIDAR----TYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEc-CCCCEEEEecCcccEEEEEec----ccceeehhc-ccceeeee
Confidence 99999999999999999999888655444 457887 788999999999999999998 555554443 34557778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
.|+.++.+++.....|.|.|...... +++..++.|. .-++
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsL----------------------------------kpv~si~AH~------snCi 193 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSL----------------------------------KPVQSIKAHP------SNCI 193 (313)
T ss_pred eecCCCCEEEEecCCceEEEEecccc----------------------------------ccccccccCC------cceE
Confidence 89888888877777899999887653 5666777776 2234
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
+..|+|+|+++|+|+.|..+-+||+...-++..+..+.-+|+.++||.||++||+++.|-.|-|=++.++.....
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE
Confidence 457888999999999999999999999989999999999999999999999999999999998877777765443
No 102
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=195.54 Aligned_cols=290 Identities=21% Similarity=0.313 Sum_probs=211.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~ 213 (498)
..|+.|++.|.+||+|+.||.|.|||+.+.. +.+ ...+|..+|++++||+||+.|+++|.|..|.+||+..|.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999999853 332 3457777999999999999999999999999999999987666
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEec--cCC----CeeEEEEeC
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILA--HTS----DVNTVCFGD 286 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~----~v~~~~~~~ 286 (498)
..+.. +|+.+.|+|-.+ ..++.-.+..-.+.++..++. ++.. ..+ ...+..| +
T Consensus 103 irf~s-----------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~f-d 162 (405)
T KOG1273|consen 103 IRFDS-----------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVF-D 162 (405)
T ss_pred EEccC-----------------ccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccc-c
Confidence 55433 899999999433 333333344455555554322 2211 111 1122345 4
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 365 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 365 (498)
+.|+++++|...|.+.++|.. +.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++..........
T Consensus 163 r~g~yIitGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e-- 236 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE-- 236 (405)
T ss_pred CCCCEEEEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC--
Confidence 889999999999999999998 667777666555 7889999999999999999999999999985322110000
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEec
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~ 444 (498)
-.+...+..--....-..| +||.+|.|+++|+. ...++||....|.+++.+.
T Consensus 237 -----------------------~e~~~K~qDvVNk~~Wk~c----cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 237 -----------------------VEPEHKLQDVVNKLQWKKC----CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred -----------------------cChhHHHHHHHhhhhhhhe----eecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 0000000000000011122 56679999998875 4679999999999999998
Q ss_pred cCC-CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 445 YHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 445 ~h~-~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
|.. ....++.|+|-.+.+++- ..|.|+||.....+
T Consensus 290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred CCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 877 567899999999998888 67999999876543
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=9.8e-27 Score=204.35 Aligned_cols=263 Identities=21% Similarity=0.253 Sum_probs=209.2
Q ss_pred ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883 112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 191 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 191 (498)
..++.+....+-...+.||.-.|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+..+|.|.||
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYl 318 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYL 318 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEE
Confidence 34444554555567889999999999999999999999999999999987653 333456788899999999999999
Q ss_pred EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 271 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~ 271 (498)
++++.|++..+.|+.++.......... ..-.+++.+|+|||-+|.+|..||.|+|||+.++..+..
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~--------------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~ 384 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDET--------------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK 384 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeecc--------------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc
Confidence 999999999999999998755443221 112699999999999999999999999999999999999
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
+.+|.++|..++|+ .+|.+|+++++|+.|++||+| +.+...++... ...+.++.|.+.|.+|+.++.|=+|+++
T Consensus 385 Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLR----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 385 FPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLR----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred CCCCCCceeEEEec-cCceEEEEEecCCeEEEEEeh----hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999998 999999999999999999999 44444444432 2369999999999999999887666666
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
+-.+.+ ...+..+..|....+. ..|..+.+++++++.|..++
T Consensus 460 ~k~~k~--------------------------------W~~~~~~~~~sg~st~------v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 460 KKKTKS--------------------------------WTEIKELADHSGLSTG------VRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred eccccc--------------------------------ceeeehhhhcccccce------eeecccceEEeeccchhheE
Confidence 644321 2344444444422222 24555788999999999988
Q ss_pred EEEC
Q 010883 431 VYDL 434 (498)
Q Consensus 431 iwd~ 434 (498)
++.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8754
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.3e-26 Score=191.58 Aligned_cols=265 Identities=16% Similarity=0.192 Sum_probs=201.9
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC--eEEEEECCCe
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPI 199 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~s~d~~ 199 (498)
.+.+.+..|.++|++++. +|.++|+|+.|-+|+|||+.+...+..+ -.|.+.|+++.|.+.-. .|++|+.||.
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l---l~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL---LSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce---eccccceEEEEecCCcchhheeeecCCCc
Confidence 446788999999999999 5799999999999999999987555544 35677999999999775 9999999999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
|.+|+...-.....++ +|.+.|+.++.+|.|++-++.+.|+.+++||+-+++.-..+. -....
T Consensus 109 i~iw~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~a 171 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKA 171 (362)
T ss_pred EEEEEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcc
Confidence 9999998775544433 577889999999999999999999999999999887654443 22233
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
+.+.|+ +.|.+++.+..+ .|-+|.+. .......+.. ...+.++.|. ++..|++|+.|+.|.+||...
T Consensus 172 t~v~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds----- 238 (362)
T KOG0294|consen 172 TLVSWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS----- 238 (362)
T ss_pred eeeEEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC-----
Confidence 459998 778877777654 68889886 3333333332 2446666665 567899999999999999886
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-- 437 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-- 437 (498)
..+...+.+|.....-+.....+ ++.+|++++.||.|+|||+...
T Consensus 239 -----------------------------~~~~~~~~AH~~RVK~i~~~~~~----~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 239 -----------------------------DTPLTEFLAHENRVKDIASYTNP----EHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred -----------------------------CccceeeecchhheeeeEEEecC----CceEEEEeccCceEEEEEcccccc
Confidence 25566677777555444433333 6899999999999999999876
Q ss_pred ---cEEEEeccCCCCeeeeEE
Q 010883 438 ---EQVAALKYHTSPVRDCSW 455 (498)
Q Consensus 438 ---~~~~~~~~h~~~v~~l~~ 455 (498)
+++..+.. ...++|+..
T Consensus 286 ~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 286 KRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred CCcceeEEeec-CCccceeee
Confidence 44555543 445566554
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-27 Score=222.03 Aligned_cols=295 Identities=19% Similarity=0.279 Sum_probs=223.1
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE----eecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEEC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----ILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~----~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~ 205 (498)
+..+.++...++-..++.++.. .+.||.+......... .........+.++.|.. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 4567778888998888888654 6888887653211111 11122233567788875 5689999999999999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
............ ..|...+.++.|++ ...+|++|+.||.|++||++..+....+.+....|+.+.|
T Consensus 118 nk~~rnk~l~~f-------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 118 NKSIRNKLLTVF-------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred CccccchhhhHh-------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 763111111111 14777999999998 4568899999999999999999988888888899999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
+|..++.|+++.+.|.+++||+| ....+...+.+|.++|.++.|+|++.+||+|+.|+.|+|||......
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~------- 254 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA------- 254 (839)
T ss_pred ccCCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------
Confidence 99999999999999999999998 34567788899999999999999999999999999999999986432
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--CCeEEEEECCCC-cEEE
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSG-EQVA 441 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~-~~~~ 441 (498)
..+.++.. ...+.++.|.|+. ...|++++. |-.|+|||++.. -+..
T Consensus 255 -------------------------~~~~tInT---iapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 255 -------------------------KPKHTINT---IAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYA 303 (839)
T ss_pred -------------------------cceeEEee---cceeeeeeeccCc---cchhhhhhccccceEEEEeeccccccce
Confidence 22222221 1234556677763 356666654 789999999764 3567
Q ss_pred EeccCCCCeeeeEEcCC-CCeEEEEeCCCcEEEecCCCCC
Q 010883 442 ALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~-~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
++..|...++.++|... ...|.+++.||+|..-.+.+..
T Consensus 304 t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 304 TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 78889999999999763 3489999999998766555443
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.2e-27 Score=208.28 Aligned_cols=361 Identities=16% Similarity=0.235 Sum_probs=261.9
Q ss_pred ccHHHhhhccccccccchhhhhhhhcccccccccccccccccCCcccccCC-CCcchhHHHHHHhhcccCCccccccc-c
Q 010883 2 KDEEALRSCIASGVDFDEMGYAMSRFEIESEFYDAADTVNQASNSRSKFKK-PLSALDHEIAQLTKLKSEPKEHFSKE-V 79 (498)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 79 (498)
|+.+.||+.++ ...|.+ ....++++..+++.+..+.-.+..++.. ....|++....++++...+.+..... +
T Consensus 143 RLr~~F~k~~~-~PkWA~-----~~~~~~~~DDe~e~s~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I 216 (514)
T KOG2055|consen 143 RLREQFQKRYP-VPKWAK-----KASGKDSEDDEEEGSLDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGI 216 (514)
T ss_pred HHHHHHHHhcC-CCcccc-----cccccccccccccccHHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCc
Confidence 56788888888 555544 1112333333333332222224555555 77789999999999998888766554 5
Q ss_pred CCCCccccchhhhhhhhhcCCCCCccccccccccccccccCCCCCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEE
Q 010883 80 PGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIY 158 (498)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw 158 (498)
....+++...+.+.+|....+ ++-..+.. .....+.+.--..+|.++.|.|+|. .+++++....++.|
T Consensus 217 ~sv~FHp~~plllvaG~d~~l----rifqvDGk-------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTL----RIFQVDGK-------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred eEEEecCCCceEEEecCCCcE----EEEEecCc-------cChhheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 567778887777777764443 22222211 2223455566688999999999998 89999999999999
Q ss_pred ECCCCeEEEEEeecCCC-ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecE
Q 010883 159 DVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 237 (498)
Q Consensus 159 ~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 237 (498)
|+.+.+. .++....++ ...+.....+|++++|+..+..|.|.+....+++.+..+++.. .|
T Consensus 286 Dle~ak~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG-----------------~v 347 (514)
T KOG2055|consen 286 DLETAKV-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG-----------------VV 347 (514)
T ss_pred ecccccc-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc-----------------EE
Confidence 9998743 333333333 2357788899999999999999999999999988877666543 79
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC-CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccc--cCCCc
Q 010883 238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL--NVKGK 314 (498)
Q Consensus 238 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~ 314 (498)
..++|+.|++.|++.+.+|.|++||++...++.++....+ .-++++.+ .++.+||+|+..|.|.|||.... ....+
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCC
Confidence 9999999999999999999999999999998888753322 23566766 78899999999999999996522 23567
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
++..+......|+++.|++|.+.|+.++. +..+++-.+.+.
T Consensus 427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~------------------------------------- 469 (514)
T KOG2055|consen 427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC------------------------------------- 469 (514)
T ss_pred chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-------------------------------------
Confidence 78888888899999999999999987764 567888776552
Q ss_pred EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
.+|..-......+....+++|||.+.++|.|..+|.|.+|.+.
T Consensus 470 TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 470 TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1222222222333444566899999999999999999999864
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.1e-25 Score=178.04 Aligned_cols=260 Identities=19% Similarity=0.283 Sum_probs=195.3
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCc----cccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL----DFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
..|.+++|+|.|.+.++|+...+++|-....-. .....++.. .........|.+.|.|.+|+|+|.+|++|
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~-----~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI-----DLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEcccccc-----CcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 379999999999999999999999887543211 111111111 11122344688999999999999999999
Q ss_pred eCCCeEEEEECCCCee-----eEEEeccCCCeeEEEEeC---CCCCEEEEee-CCCeEEEEcCccccCCCceeEEecccc
Q 010883 253 SSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCFGD---ESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
+.|..|++.-++...+ ...+.-|.+.|..++|.+ ..+.+|++++ .|..|++-|.. .++....+.+|.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~----~g~~~~a~sght 183 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG----RGQGFHALSGHT 183 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC----CCCcceeecCCc
Confidence 9999999987765432 245667999999999972 1244566554 35566666665 788899999999
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
+.|.++- +=++-++++|+.|.+|++||++-... +.++........
T Consensus 184 ghilaly-swn~~m~~sgsqdktirfwdlrv~~~----------------------------------v~~l~~~~~~~g 228 (350)
T KOG0641|consen 184 GHILALY-SWNGAMFASGSQDKTIRFWDLRVNSC----------------------------------VNTLDNDFHDGG 228 (350)
T ss_pred ccEEEEE-EecCcEEEccCCCceEEEEeeeccce----------------------------------eeeccCcccCCC
Confidence 9998874 33678999999999999999997432 222221110000
Q ss_pred -EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 404 -LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 404 -~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
-.....+.+..|.|++|++|-.|....+||++.++.++.+..|...|.++.|+|...+|.+++.|..|++=|+.+.-
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 01122334667789999999999999999999999999999999999999999999999999999999999998653
No 108
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=210.48 Aligned_cols=297 Identities=22% Similarity=0.263 Sum_probs=216.5
Q ss_pred EEEEEcCC---CCEEEEEECCCeEEEEECCCCeEE---EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 135 YVSQFSAD---GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 135 ~~~~~s~d---g~~la~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
++..|++. ..+||.+..||.|.++|.....-- ..+.....|...|.++.|.|....|++++.|.++++||++++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34566653 358999999999999998753111 123455678889999999997778999999999999999998
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee-------------------
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL------------------- 268 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~------------------- 268 (498)
++..... ..||.+.|.+++|.|+. ..|++|+.||.|.|||+.....
T Consensus 133 ~l~G~~~--------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 133 RLVGGRL--------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eeeccee--------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 8755431 12788999999999955 5788999999999999864320
Q ss_pred --------eEEEeccCCC----eeEEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCC--cee--EEeccc---cccEEE
Q 010883 269 --------SLRILAHTSD----VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKG--KPA--GVLMGH---LEGITF 328 (498)
Q Consensus 269 --------~~~~~~~~~~----v~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~--~~~--~~~~~~---~~~v~~ 328 (498)
+.....+... |+.+.| .|+..|++++. |+.|+|||++...... .+. ..+..| .-++++
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 0111123333 455555 57778888887 9999999998432211 111 122223 345778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
+.....|.+|.+.+.|+.|++|++..... .++..+.++......+..
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~vks- 323 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYVKS- 323 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeeeee-
Confidence 88888889999999999999999998543 333444444432222222
Q ss_pred eccccCCCCcEEEEEecCCeEEEEECCCCcE-EEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCCCC
Q 010883 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
..+||+.+|++|+.|...++|.+.+.+. ...+.+|.-.|++++|.|..- -++|+++|..++||++..+.+..
T Consensus 324 ---~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 324 ---ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred ---ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 4577999999999999999999988654 566779999999999998543 57888999999999997766554
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.3e-26 Score=206.93 Aligned_cols=308 Identities=19% Similarity=0.226 Sum_probs=227.4
Q ss_pred cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC--eEEEE
Q 010883 117 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYA 194 (498)
Q Consensus 117 ~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~ 194 (498)
+.+|..+...+.+|++.|.|+...|.|.+||+|+.||+|+||.+.+|.++....... .|.+++|+|.++ .||++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEE
Confidence 445777778889999999999999999999999999999999999998887764432 699999999775 44444
Q ss_pred ECCCeEEEEECCCCceeccccccc--------ccc---Cccccc----------cCCCCceecEEEEEEcCCCCEEEEEe
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTE--------IHD---GLDFSA----------ADDGGYSFGIFSLKFSTDGRELVAGS 253 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~--------~~~---~~~~~~----------~~~~~h~~~i~~~~~s~~g~~l~~g~ 253 (498)
-. ..+.|.+..-|..+....... ... ...... .....|...|..+.|+..|.+|++..
T Consensus 462 ~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 VG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred ec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 43 346666654332111100000 000 000000 01124667899999999999999876
Q ss_pred CC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883 254 SD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330 (498)
Q Consensus 254 ~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (498)
.+ ..|.|+++...+...-+....+.|.++.|+ |...+|++++ ...|++||+. ....+..+......|..++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaT-q~~vRiYdL~----kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVAT-QRSVRIYDLS----KQELVKKLLTGSKWISSMS 614 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEe-ccceEEEehh----HHHHHHHHhcCCeeeeeee
Confidence 53 569999998877666666677889999998 4455555555 4689999997 6666777776778899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
.+|.|..|+.++.|+.+..+|+.-.. .+.+++..|... ..+
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlss---------------------------------kPyk~lr~H~~a------vr~ 655 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSS---------------------------------KPYKTLRLHEKA------VRS 655 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCc---------------------------------chhHHhhhhhhh------hhh
Confidence 99999999999999999999998643 334445555422 233
Q ss_pred cccCCCCcEEEEEecCCeEEEEECC------CC---cEEEEeccCCCC----eeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 411 PVYSTGQKYIYTGSHDSCVYVYDLV------SG---EQVAALKYHTSP----VRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~dg~i~iwd~~------~~---~~~~~~~~h~~~----v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
.+|.+.-.++++|+.||++.|+.-. .. -++..+++|... |.++.|+|..++|++++.||+|++|
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 3555567789999999999998522 11 246777888765 9999999999999999999999998
No 110
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=6.7e-26 Score=191.99 Aligned_cols=283 Identities=23% Similarity=0.321 Sum_probs=214.3
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------E--EEE-EeecCCCceeEEEEEeC-------CCCCeEEEEEC
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGW-------K--IQK-DILAKSLRWTVTDTSLS-------PDQRHLVYASM 196 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-------~--~~~-~~~~~~~~~~v~~~~~s-------p~~~~l~~~s~ 196 (498)
...+.|||||..|++-+.|..+.+|++...- . ... ..........|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3457899999999999999999999985320 0 000 00111223367777775 67789999999
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeee--EEE-
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLS--LRI- 272 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~--~~~- 272 (498)
+.-|++||.-+|+.......-...+.+ ....+++|+|||.+|++|. ...|+++|+. .|... ...
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~-----------taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEY-----------TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhh-----------hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 999999999999876655543322211 1467899999999988875 6689999993 33321 111
Q ss_pred ----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCcE
Q 010883 273 ----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAI 347 (498)
Q Consensus 273 ----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i 347 (498)
.+..+-+.|++|+|.+...++.|+....+-||.-. ...++..+-+|.+.|+.+.|.++|+.|.+|+. |..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 13367789999998888899999999998888776 77889999999999999999999999999885 6789
Q ss_pred EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883 348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
..||+|... .++..+..|.. .+.-++.| ...|++++|++|+.||
T Consensus 276 l~WDiR~~~---------------------------------~pv~~L~rhv~-~TNQRI~F--Dld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 276 LCWDIRYSR---------------------------------DPVYALERHVG-DTNQRILF--DLDPKGEILASGDTDG 319 (406)
T ss_pred EEEeehhcc---------------------------------chhhhhhhhcc-CccceEEE--ecCCCCceeeccCCCc
Confidence 999999843 33333344332 01222333 3456899999999999
Q ss_pred eEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC
Q 010883 428 CVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 468 (498)
Q Consensus 428 ~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D 468 (498)
.|++||+.. +..+..+..|...++.++++|--++++|++..
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999999998 78788888899999999999999999998754
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=202.23 Aligned_cols=275 Identities=19% Similarity=0.256 Sum_probs=206.1
Q ss_pred EECC-CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCceec-cccccccccCccc
Q 010883 149 GFQA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMES-LANVTEIHDGLDF 225 (498)
Q Consensus 149 ~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~ 225 (498)
++.| ..+.+||+.+|............ .-.++.. -.+.+++++.. ...|.+|.+....... ...
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a--~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v---------- 79 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLA--QAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIV---------- 79 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccc--cchhhhh-hchhheeeecccCccccccccCchhhhhhhcc----------
Confidence 3344 45999999999655443222110 0111111 13356666654 4589999987654333 111
Q ss_pred cccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883 226 SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305 (498)
Q Consensus 226 ~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd 305 (498)
-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+ .++.+|++|+.||.|.+|+
T Consensus 80 -------~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 80 -------LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred -------cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEE
Confidence 12379999999999999999899999999999999999999999999999998 8999999999999999998
Q ss_pred Cccc-----cCCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883 306 RRCL-----NVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 378 (498)
Q Consensus 306 ~~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
+... ....++...+..|.-+|+.+...+. ..+|++++.|.++++||+...
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------------------- 208 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----------------------- 208 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-----------------------
Confidence 7421 1256788999999999999998764 368999999999999999873
Q ss_pred cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC----------------cEEEE
Q 010883 379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG----------------EQVAA 442 (498)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----------------~~~~~ 442 (498)
..+.++.... .+.. .+.+|.++.+++|+.+|.|.+.++... ..+..
T Consensus 209 -----------~LLlti~fp~---si~a----v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 209 -----------VLLLTITFPS---SIKA----VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred -----------eeeEEEecCC---ccee----EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence 3333333222 2222 245667999999999999999886532 24556
Q ss_pred eccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCc
Q 010883 443 LKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 485 (498)
Q Consensus 443 ~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 485 (498)
+.+|.+ +|+|++.+-||.+|++|+.||.|+|||+.........
T Consensus 271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 778988 9999999999999999999999999999876544433
No 112
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=3.3e-27 Score=192.88 Aligned_cols=249 Identities=12% Similarity=0.230 Sum_probs=203.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
-.+.+|++.|+....+.+..+.|+++.|-+-+|||.-+|..+..+ .|..-|.+++|+.|.++|++|+.+..++|+|
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 468999999999999999999999999999999999998665543 4555899999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
++..+.. +..-.+|++.|..+.|....+.|++...|++|++||..+++.+.++ ....+|+++.+
T Consensus 129 ln~p~Ap---------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-~~~s~VtSlEv 192 (334)
T KOG0278|consen 129 LNRPKAP---------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-EFNSPVTSLEV 192 (334)
T ss_pred ccCCCCC---------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-ecCCCCcceee
Confidence 8765431 1122378899999999998888999999999999999999999888 56678999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
+ +++++|.+ ...+.|.+||.. ....+..+. ..-.|.+...+|+...+++|+.|..++.||..+..
T Consensus 193 s-~dG~ilTi-a~gssV~Fwdak----sf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-------- 257 (334)
T KOG0278|consen 193 S-QDGRILTI-AYGSSVKFWDAK----SFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-------- 257 (334)
T ss_pred c-cCCCEEEE-ecCceeEEeccc----cccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc--------
Confidence 8 78877654 456799999997 555555554 34568889999999999999999999999999843
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEE-ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 440 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 440 (498)
.+-.+ ++|... + -+..|||||..-++|+.||+|+||.+..++..
T Consensus 258 --------------------------Ei~~~nkgh~gp--V----hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 --------------------------EIGSYNKGHFGP--V----HCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred --------------------------eeeecccCCCCc--e----EEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 33333 455422 2 22367889999999999999999998766543
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=212.03 Aligned_cols=308 Identities=17% Similarity=0.222 Sum_probs=224.7
Q ss_pred ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe-
Q 010883 112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH- 190 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~- 190 (498)
...++.....+..+.+.++.+.|+++.=+|-=..+|.|..+|+|.++++..++.+..... ..+.|+.++|..||+.
T Consensus 183 ~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~---d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 183 RLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ---DWGRVTSLSFRTDGNPL 259 (910)
T ss_pred cEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc---cccceeEEEeccCCCee
Confidence 344556666666788899999999999999999999999999999999999876665432 2468999999999975
Q ss_pred EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---
Q 010883 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--- 267 (498)
Q Consensus 191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~--- 267 (498)
|++|+..|.+.+||++..+....... .|.+.|....|.|....+++++.|+.+++|=..++.
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~n---------------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRN---------------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeec---------------cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 55566679999999998776554332 122344444555544445555545444443221110
Q ss_pred -eeEEEeccC----------------------------------------------------------------------
Q 010883 268 -LSLRILAHT---------------------------------------------------------------------- 276 (498)
Q Consensus 268 -~~~~~~~~~---------------------------------------------------------------------- 276 (498)
.++.-.+|.
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 000000111
Q ss_pred --------------------------------------------CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883 277 --------------------------------------------SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 277 --------------------------------------------~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
..+++++.+ ..|++.+.|+..|.|-+|++. .
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQ----S 479 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQ----S 479 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcc----c
Confidence 345666665 667778888888888888886 5
Q ss_pred CceeEEe---ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883 313 GKPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389 (498)
Q Consensus 313 ~~~~~~~---~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
+.....+ ..|..+|+.++...-++.+++++.+|.+++||+.+..
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--------------------------------- 526 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--------------------------------- 526 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc---------------------------------
Confidence 5555566 4799999999999889999999999999999998732
Q ss_pred ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
.+..++..... ..+.++.....++++..|-.|+++|+.+.+.+..+.+|.+.|++++|||||++|++++.|+
T Consensus 527 -l~~~l~l~~~~-------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~ 598 (910)
T KOG1539|consen 527 -LKKSLRLGSSI-------TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS 598 (910)
T ss_pred -eeeeeccCCCc-------ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence 22222221111 1112333556788999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCCC
Q 010883 470 DVVRWEFPGNGEAA 483 (498)
Q Consensus 470 ~i~iw~~~~~~~~~ 483 (498)
+|++||+.++....
T Consensus 599 tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 599 TIRTWDLPTGTLID 612 (910)
T ss_pred cEEEEeccCcceee
Confidence 99999999887653
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-25 Score=211.59 Aligned_cols=280 Identities=17% Similarity=0.209 Sum_probs=217.3
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
-.|+..-+.++|.|+|++|.+++.||.|++|+..........+. .+...|.+++. ++.+|++++.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 36788899999999999999999999999999876522222221 14446766665 566999999999999999988
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
++...+... .+.++.+++|+-+|+++|.|+.|-.|++.++........+.+|.++|.++.|. |
T Consensus 86 ~~~~~iL~R----------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p 148 (933)
T KOG1274|consen 86 GEEDTILAR----------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-P 148 (933)
T ss_pred CCccceeee----------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-C
Confidence 876433321 23389999999999999999999999999999999999999999999999997 8
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--------ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
.+++||+.+.||.|++||+. .+.....+.+ ....+..++|+|++..|+..+.|+.|++|+.....
T Consensus 149 ~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we--- 221 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE--- 221 (933)
T ss_pred CCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce---
Confidence 89999999999999999997 4444333332 14457789999999999999999999999988743
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
....+........... ..|||+|+|||+++.||.|.|||+.+.+.
T Consensus 222 -------------------------------~~f~Lr~~~~ss~~~~----~~wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 222 -------------------------------LQFKLRDKLSSSKFSD----LQWSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred -------------------------------eheeecccccccceEE----EEEcCCCcEEeeeccCCcEEEEecccchh
Confidence 2233333222222222 36777999999999999999999988332
Q ss_pred EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 440 ~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
......|.+++|.|+.+-|-.-...|...+|
T Consensus 267 ----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 267 ----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 2234689999999999866665556655554
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.7e-25 Score=187.45 Aligned_cols=243 Identities=20% Similarity=0.294 Sum_probs=188.5
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
....|..+.|+|.+..|++++.||.+++|++........++ |..++.+++|.++. .+++|+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----------------~~~plL~c~F~d~~-~~~~G~~ 73 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----------------HGAPLLDCAFADES-TIVTGGL 73 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-----------------cCCceeeeeccCCc-eEEEecc
Confidence 34579999999999999999999999999998875443333 55699999999754 6999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883 255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334 (498)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 334 (498)
||.|+.+|++++.. ..+..|..+|.||.++ +....+++|+.|++|++||.+ .......+. ....|.++..+
T Consensus 74 dg~vr~~Dln~~~~-~~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R----~~~~~~~~d-~~kkVy~~~v~-- 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNE-DQIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPR----NKVVVGTFD-QGKKVYCMDVS-- 144 (323)
T ss_pred CceEEEEEecCCcc-eeeccCCCceEEEEee-ccCCeEEEcccCccEEEEecc----ccccccccc-cCceEEEEecc--
Confidence 99999999999876 4566899999999998 667789999999999999998 433443443 23478888774
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
++.|++|+.|..+.+||++++...... ..+.....+++. ++-
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~-----------------------------------reS~lkyqtR~v---~~~ 186 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQR-----------------------------------RESSLKYQTRCV---ALV 186 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhh-----------------------------------ccccceeEEEEE---EEe
Confidence 668999999999999999996543211 111112223332 333
Q ss_pred CCCcEEEEEecCCeEEEEECCCC----cEEEEeccCC---------CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 415 TGQKYIYTGSHDSCVYVYDLVSG----EQVAALKYHT---------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
|++.-.++++-||.|.+=.+... +....|+.|. .||++++|+|-...||||+.||.|.+||+.+.+.
T Consensus 187 pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence 46777888999999988777665 4455666664 3799999999999999999999999999987654
Q ss_pred C
Q 010883 482 A 482 (498)
Q Consensus 482 ~ 482 (498)
.
T Consensus 267 l 267 (323)
T KOG1036|consen 267 L 267 (323)
T ss_pred h
Confidence 4
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=211.26 Aligned_cols=220 Identities=16% Similarity=0.268 Sum_probs=190.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEe-CCCCCeEEEEECCCeEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-SPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~s~d~~i~i 202 (498)
...++.|.+.|+.++...+|+.|++++.|-+|++|+...+. ..-......|...|.|+++ .++...+|+|+-|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 56789999999999999999999999999999999998763 1222345678889999999 888999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCC-CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDG-GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
||+.++.......... ....... |+..+|++++-++.|..|++|+..+.+++||..+++.+..+.+|...|.+
T Consensus 145 WDin~~~~~l~~s~n~------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 145 WDINTGTATLVASFNN------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred EEccCcchhhhhhccc------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 9999874311111111 1111122 77889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
+..+ ++|..+++++.||+|++||+. ...++.++..|.+.|+++..+|+-.++++|+.||.|..-|+++.
T Consensus 219 ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 219 LLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9997 899999999999999999998 88899999999999999999999999999999999999999984
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.3e-26 Score=203.43 Aligned_cols=265 Identities=16% Similarity=0.206 Sum_probs=195.2
Q ss_pred eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec-cccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883 170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 248 (498)
Q Consensus 170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~ 248 (498)
+...+|...|.++++.|.|..+++|+.|.+|++||+....... .+..... .....|.+++|++.|..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P------------~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP------------CETHQINSLQYSVTGDQ 228 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc------------ccccccceeeecCCCCe
Confidence 3456778899999999999999999999999999997643211 1111000 11227999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEE------------EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee
Q 010883 249 LVAGSSDDCIYVYDLEANKLSLR------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 316 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 316 (498)
|++.+.....+|+|-...+.... ..+|...++|.+|+|.+.+.|++++.||++++||+.......+.+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 99999899999999765444322 247999999999998889999999999999999997443222222
Q ss_pred EEe--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883 317 GVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 394 (498)
Q Consensus 317 ~~~--~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
... .+..-+++.++|++|++.||+|+.||.|.+|+.++.... .....
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------p~~~v 357 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------PVMKV 357 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------------------cceEe
Confidence 211 133456899999999999999999999999998764322 12223
Q ss_pred EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEecc--CCCCeeeeEEcCCCCeEEEEeC----
Q 010883 395 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKY--HTSPVRDCSWHPSQPMLVSSSW---- 467 (498)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~---- 467 (498)
-+.|.....+. ++.||+||++|++-+.|+++++||++.. +++....+ ...+-+.++|||+.++|++|..
T Consensus 358 k~AH~~g~~It----si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 358 KDAHLPGQDIT----SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred eeccCCCCcee----EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence 34444322333 3367779999999999999999999875 44554443 2345688999999999999853
Q ss_pred --CCcEEEecCCCCCC
Q 010883 468 --DGDVVRWEFPGNGE 481 (498)
Q Consensus 468 --Dg~i~iw~~~~~~~ 481 (498)
-|.+.+||-.+-+.
T Consensus 434 ~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDT 449 (641)
T ss_pred CCCceEEEEeccceee
Confidence 46788888665543
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-26 Score=186.91 Aligned_cols=260 Identities=22% Similarity=0.282 Sum_probs=200.8
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce-eccccccccccCccccccCCCCceecEEEEEEcC--CCCEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL 249 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l 249 (498)
..|...|.++...--|+.||+++.|++|+|+.++.+.. ..+. ...||.+||..++|-. .|.+|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~--------------~L~Gh~GPVwqv~wahPk~G~iL 73 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA--------------ELTGHSGPVWKVAWAHPKFGTIL 73 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee--------------EecCCCCCeeEEeecccccCcEe
Confidence 46777888888888899999999999999999987654 1121 2348999999999976 89999
Q ss_pred EEEeCCCeEEEEECCCCeee--EEEeccCCCeeEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883 250 VAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 326 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v 326 (498)
|+++.||.|.||.-++++.. .....|...|++++|.|.+ +-.|++++.||.|.|.+.+... ..........|.-.|
T Consensus 74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGV 152 (299)
T ss_pred eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhcccccc
Confidence 99999999999998887533 3445899999999998644 5688999999999999987441 223445567899999
Q ss_pred EEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 327 TFIDSRGD---G-----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 327 ~~l~~~~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
++++|.|- | +.|++|+.|..|+||+.....- ..-
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--------------------------------~~e 200 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--------------------------------KLE 200 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--------------------------------hhh
Confidence 99999985 4 5699999999999999987421 122
Q ss_pred EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-c--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-E--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
.++.+|.. .+....++|...--..+||+++.||+|.||..... + ....++.....+..++||+.|++|+.++.|+
T Consensus 201 ~~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 201 RTLEGHKD--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhhcch--hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 33566663 23344566665555678999999999999986521 1 1223334567899999999999999999999
Q ss_pred cEEEecCCCCCC
Q 010883 470 DVVRWEFPGNGE 481 (498)
Q Consensus 470 ~i~iw~~~~~~~ 481 (498)
.|.+|.-+..++
T Consensus 279 kvtlwke~~~Gk 290 (299)
T KOG1332|consen 279 KVTLWKENVDGK 290 (299)
T ss_pred EEEEEEeCCCCc
Confidence 999998766543
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=5.2e-24 Score=197.88 Aligned_cols=276 Identities=14% Similarity=0.130 Sum_probs=194.6
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE-EEEECCCeEEEEECCCCceecccccccccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
++.+++++.|+.|++||+.+++.+.... .+. .+..++|+|+++.+ ++++.++.|++||..+++........
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~---~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---- 72 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFP---VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---- 72 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEE---CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC----
Confidence 3678899999999999999886555432 222 46789999999977 45677899999999887654322210
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC-
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN- 299 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg- 299 (498)
..+..++|+|+++.++++ ..++.|++||+.+.+.+..+. +...+.+++|+ +++.++++++.++
T Consensus 73 -------------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~-~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 73 -------------PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVS-PDGKIVVNTSETTN 137 (300)
T ss_pred -------------CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEEC-CCCCEEEEEecCCC
Confidence 034578999999977655 458999999999887776664 33456889997 7888888888765
Q ss_pred eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883 300 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 378 (498)
Q Consensus 300 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
.+.+||.. ......... ....+..++|+|++++|+++ ..++.|++||+.+...
T Consensus 138 ~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--------------------- 191 (300)
T TIGR03866 138 MAHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--------------------- 191 (300)
T ss_pred eEEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------------------
Confidence 56778986 444443332 23345789999999988654 4689999999987432
Q ss_pred cCcccccCCCCceEEEEccCceeEE-EEEEEeccccCCCCcEEEEE-ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883 379 PQARDLKHPCDQSVATYKGHSVLRT-LIRCHFSPVYSTGQKYIYTG-SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 456 (498)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 456 (498)
+..+..+..... .........|+|++++++++ ..++.|.+||+.+++.+..+. +...+.+++|+
T Consensus 192 -------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 257 (300)
T TIGR03866 192 -------------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT 257 (300)
T ss_pred -------------eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence 111111000000 00001123567899986554 456789999999988876654 44579999999
Q ss_pred CCCCeEEEE-eCCCcEEEecCCCCCC
Q 010883 457 PSQPMLVSS-SWDGDVVRWEFPGNGE 481 (498)
Q Consensus 457 p~~~~l~s~-~~Dg~i~iw~~~~~~~ 481 (498)
|++++|+++ +.+|.|.+||+.+...
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 999998876 5689999999998654
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1e-26 Score=203.09 Aligned_cols=250 Identities=20% Similarity=0.253 Sum_probs=200.9
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
....|.+.+..+.|-++...|++|+.|..|++|++..++......+. |-.++|+++.|.+++++++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------------Gs~g~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--------------GSLGNITSIDFDSDNKHVI 235 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--------------ccCCCcceeeecCCCceEE
Confidence 34567889999999999999999999999999999877632222221 3344799999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883 251 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (498)
+++.|+.+++|++...+...++.+|.+.|+++.|. .....+++|+.|.+|++||+. ...+..++. ....+..|.
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~----k~~C~kt~l-~~S~cnDI~ 309 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQ----KAYCSKTVL-PGSQCNDIV 309 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhh----hhheecccc-ccccccceE
Confidence 99999999999999999999999999999999997 445559999999999999997 544444443 335566666
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
.+ ...+++|..|++|++||++... .......+.. ..+
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~~----------------------------------~~~sv~~gg~-------vtS 346 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSAD----------------------------------KTRSVPLGGR-------VTS 346 (459)
T ss_pred ec--ceeeeecccccceEEEeccCCc----------------------------------eeeEeecCcc-------eee
Confidence 65 5578999999999999999843 3333333331 123
Q ss_pred cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC----CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
+..+++|..|.+.+.|.++.+.|+.+.+....+.+. ....+.+.|||++.|+++||.||.|+||++.+++...
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 356668999999999999999999999888877632 2348899999999999999999999999999886543
No 121
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=9.7e-25 Score=180.25 Aligned_cols=240 Identities=20% Similarity=0.216 Sum_probs=201.8
Q ss_pred eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883 170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l 249 (498)
+...+|..+++.+.++.+|.+|.+++.|.+..||-..+|+.+.... ||++.|+|+..+.+.+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~----------------GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD----------------GHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec----------------CCCceEEEEEecCCccee
Confidence 4557899999999999999999999999999999988887655544 799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-----CCeEEEEcCcccc---CCCceeEEecc
Q 010883 250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN---VKGKPAGVLMG 321 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~---~~~~~~~~~~~ 321 (498)
++|+.|.++++||+++|+++..+ ....+|..+.|+ .++++++.... .+.|.++|++... ....+...+..
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 99999999999999999998887 566789999998 77887776654 4679999997332 24456778888
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
+...++.+.|.|-+++|++|..||.|.+||++++. +.+..-+.|..
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---------------------------------~~v~s~~~h~~- 191 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---------------------------------ELVDSDEEHSS- 191 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCc---------------------------------eeeechhhhcc-
Confidence 88999999999999999999999999999999853 23333334442
Q ss_pred EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC
Q 010883 402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 467 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~ 467 (498)
.+..+.+++|..++++++.|.+-++||..+.+.++++. ...||++.+++|....++.|+.
T Consensus 192 -----~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 192 -----KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred -----ccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCC
Confidence 22345778899999999999999999999999999997 5679999999998887776654
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.1e-25 Score=188.50 Aligned_cols=270 Identities=22% Similarity=0.337 Sum_probs=224.6
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCcc
Q 010883 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 224 (498)
Q Consensus 145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 224 (498)
.+++...++++.. . ......+|...|..++-......+.+++.|.+.+||.++++.+...+.
T Consensus 126 rivssFk~~t~~~-~--------lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~--------- 187 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF-R--------LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT--------- 187 (481)
T ss_pred hheeeecCCceeE-e--------ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec---------
Confidence 4555566665322 1 222446788899999988888899999999999999999999876654
Q ss_pred ccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC------CCC--------------------------------
Q 010883 225 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL------EAN-------------------------------- 266 (498)
Q Consensus 225 ~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~------~~~-------------------------------- 266 (498)
||.+.|++++|++.+.++++++.|++..||.. ...
T Consensus 188 -------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 188 -------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred -------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 79999999999999999999999999999962 110
Q ss_pred --eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883 267 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 267 --~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
.++..+.+|.+.|.+..|. ..++.+++++.|.+..+||++ .+.++..+.+|....+.++-+|..+++++.+.|
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVE----tge~v~~LtGHd~ELtHcstHptQrLVvTsSrD 335 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVE----TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD 335 (481)
T ss_pred eeeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeec----cCceeccccCcchhccccccCCcceEEEEeccC
Confidence 1345677899999999997 889999999999999999998 999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
.+.++||++.. -+.+..|.+|.... ....|.. +..+++|+
T Consensus 336 tTFRLWDFRea---------------------------------I~sV~VFQGHtdtV--TS~vF~~-----dd~vVSgS 375 (481)
T KOG0300|consen 336 TTFRLWDFREA---------------------------------IQSVAVFQGHTDTV--TSVVFNT-----DDRVVSGS 375 (481)
T ss_pred ceeEeccchhh---------------------------------cceeeeecccccce--eEEEEec-----CCceeecC
Confidence 99999999852 26788999998543 3444443 45689999
Q ss_pred cCCeEEEEECCCC-cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCc
Q 010883 425 HDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 485 (498)
Q Consensus 425 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 485 (498)
.|.+|+|||+++. .++.++. ..++++.++.+..++.|+.--++..|++||+++...+..|
T Consensus 376 DDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 9999999999875 4677776 5678999999999999999999999999999988765544
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.6e-25 Score=184.15 Aligned_cols=275 Identities=17% Similarity=0.159 Sum_probs=201.3
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEEE
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd 204 (498)
.+|.+-|+|+.|.+.|+++|+|+.|++|+|||..++ ...........|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 578899999999999999999999999999996543 23334445667888999999976 589999999999999998
Q ss_pred CCCCce-------eccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe------ee
Q 010883 205 VGSGTM-------ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK------LS 269 (498)
Q Consensus 205 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~~------~~ 269 (498)
-..... .....+. .-...|+++.|.| -|-.||+++.||.|+||+....- +.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~--------------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV--------------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred ecccccccccceeEEEEEee--------------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 532111 1111111 1234799999999 56789999999999999865432 22
Q ss_pred EEEe-------ccCCCeeEEEEeCC--CCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-
Q 010883 270 LRIL-------AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD- 334 (498)
Q Consensus 270 ~~~~-------~~~~~v~~~~~~~~--~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~- 334 (498)
..+. .+..+..|+.|++. ...+|+.|+.+ +.++||...........+..+.+|..+|+.|+|.|+
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 2222 46678899999843 24678888766 578999876443355667788899999999999996
Q ss_pred ---CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883 335 ---GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411 (498)
Q Consensus 335 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
-..||+++.|| |+||.++........
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~-------------------------------------------------- 264 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEE-------------------------------------------------- 264 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhh--------------------------------------------------
Confidence 35789999999 999999753211100
Q ss_pred ccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.-+.++..-+. + .-+.+..+..|.+.|+.+.|+-.|..|++.|.||.|++|..+-.
T Consensus 265 ------ee~~~~~~~~~---l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 265 ------EEVLAPDLMTD---L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ------hcccCCCCccc---c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 00000000011 1 22456778899999999999999999999999999999986543
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.2e-24 Score=200.28 Aligned_cols=299 Identities=19% Similarity=0.257 Sum_probs=227.9
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----EEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
.+.+|.+.|+++.|+|++..|++++.|.++.+|.-.+..-+. ++-...+..+......|+|+++.+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 345999999999999999999999999999999987651121 1112223344678899999999999999999999
Q ss_pred EEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccC
Q 010883 202 IVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHT 276 (498)
Q Consensus 202 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~ 276 (498)
+|...... ..... .-.||...|.+++|.|.|.+|++.+.|-+-+++-.-..+ .+.+-.-|.
T Consensus 342 lWkt~d~~~w~~~~--------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEP--------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred EEeccCccceeecc--------------ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence 99933221 11111 123788999999999999999999999999998654222 223334688
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc----------c------------------cC-----------C-----
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC----------L------------------NV-----------K----- 312 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----------~------------------~~-----------~----- 312 (498)
..++|+++- +.+..|++|.....+|+|+... . .. .
T Consensus 408 yDl~c~~~v-n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 408 YDLTCLSFV-NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred ccceeeehc-cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 899999997 4477888999999999997530 0 00 0
Q ss_pred ----------------------------CceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCCCcc
Q 010883 313 ----------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNA 359 (498)
Q Consensus 313 ----------------------------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~ 359 (498)
...+..+.+|.-.|.+++.+|+++++|+++... .|++|+..+-
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---- 562 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---- 562 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch----
Confidence 001223456888899999999999999988653 5899998773
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
..+..+.+|+...+.+ +|||||++|++.+.|.++.+|.......
T Consensus 563 ------------------------------~~~~~L~~HsLTVT~l------~FSpdg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 563 ------------------------------LQVQELEGHSLTVTRL------AFSPDGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred ------------------------------hhhheecccceEEEEE------EECCCCcEEEEeecCceEEeeeeecccc
Confidence 3444677777443333 6777999999999999999998754322
Q ss_pred ----EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 440 ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 440 ----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
....+.|..-|+++.|+|++.+++|+|.|.+|++|..+..
T Consensus 607 ~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 607 DEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 3346789999999999999999999999999999999877
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=2.2e-23 Score=186.76 Aligned_cols=300 Identities=17% Similarity=0.248 Sum_probs=224.4
Q ss_pred CCCCccccCCCCceEEEEEcCC--CCEEEEEE--CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC
Q 010883 121 VNGPWPVDQTTSRAYVSQFSAD--GSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 196 (498)
Q Consensus 121 ~~~~~~l~~h~~~v~~~~~s~d--g~~la~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~ 196 (498)
....+.+......|.|++||+- |.+|+.-. .+..+.|||...+....... ..+..|....|+|.+..|+....
T Consensus 144 L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~G 220 (626)
T KOG2106|consen 144 LSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCG 220 (626)
T ss_pred ceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeC
Confidence 3344555677889999999983 56666543 34568899998875554433 23347889999997776666666
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 276 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 276 (498)
.+.+..|+.+++.......+.+..+ ..-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~e------------kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKRE------------KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred CceEEEEEccCCceEEEeecccccc------------ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC
Confidence 7899999999887655444333221 13699999999997 8999999999999999988888888999
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc--------C----------------------------CCceeEEec
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--------V----------------------------KGKPAGVLM 320 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--------~----------------------------~~~~~~~~~ 320 (498)
+.|.+++.. .++.+| +|+.|..|..||-.-.. . .........
T Consensus 288 ggv~~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 288 GGVFSLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred CceEEEEEe-cCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 999999997 666554 69999999999832000 0 000112234
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883 321 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 400 (498)
Q Consensus 321 ~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
+|......++.+|+...+++++.|+.+++|+-.. .+-+.
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k------------------------------------~~wt~----- 404 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK------------------------------------LEWTK----- 404 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEccCCc------------------------------------eeEEE-----
Confidence 5777888999999999999999999999999221 11111
Q ss_pred eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 401 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
.+....-+..|.|.| .+|.|+..|...+.|.++...+..-.. ..+++.++|+|+|.+||.|+.|+.|+||.++.++
T Consensus 405 --~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 405 --IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred --EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 111112334677788 999999999999999999666655444 8899999999999999999999999999998876
Q ss_pred CCC
Q 010883 481 EAA 483 (498)
Q Consensus 481 ~~~ 483 (498)
..-
T Consensus 481 ~~y 483 (626)
T KOG2106|consen 481 RKY 483 (626)
T ss_pred cEE
Confidence 543
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=205.64 Aligned_cols=249 Identities=17% Similarity=0.238 Sum_probs=202.4
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~ 251 (498)
..|...-+.++|.|+|.+|++++.||.|++|+..... ...... .+...|.+++.. +.+|++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~----------------~~g~~v~~ia~~--s~~f~~ 71 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID----------------ISGELVSSIACY--SNHFLT 71 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh----------------ccCceeEEEeec--ccceEE
Confidence 3566678999999999999999999999999976542 111111 022357666654 558999
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 331 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 331 (498)
|+.+++|.+|.+.+++.-..+....-++++++|+ .+|++++.|+.|-.|++-++. .......+.+|.++|.++.|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSY 146 (933)
T ss_pred eeccceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeE
Confidence 9999999999999988766677778899999998 899999999999999999997 77888899999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce--eEEEEEEEe
Q 010883 332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHF 409 (498)
Q Consensus 332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 409 (498)
+|++++||+.+.||.|++||+.+....... .+-.. .....+.+.
T Consensus 147 ~p~~~fLAvss~dG~v~iw~~~~~~~~~tl----------------------------------~~v~k~n~~~~s~i~~ 192 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGKVQIWDLQDGILSKTL----------------------------------TGVDKDNEFILSRICT 192 (933)
T ss_pred cCCCCEEEEEecCceEEEEEcccchhhhhc----------------------------------ccCCccccccccceee
Confidence 999999999999999999999974432221 11100 001134455
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.++|+|+|..++..+.|+.|.+|+..+.+....+. .+...+.+++|+|.|+|||+++.||.|.|||+.+
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 66888898889999999999999999999888775 3445599999999999999999999999999986
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=5e-24 Score=201.85 Aligned_cols=302 Identities=22% Similarity=0.275 Sum_probs=233.8
Q ss_pred cccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
.++.-.++|+.++|.-||+ .+|+|+..|.+-+||++..+.+.. ....|.+.|+...|.|....+++++.|+.+++|-
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v--~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV--TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee--eeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 3444469999999999996 677788889999999998644443 3356777899999999999999999999888886
Q ss_pred CCCCcee-ccccccccc-----------------------------------------c---------------------
Q 010883 205 VGSGTME-SLANVTEIH-----------------------------------------D--------------------- 221 (498)
Q Consensus 205 ~~~~~~~-~~~~~~~~~-----------------------------------------~--------------------- 221 (498)
.+++.-. +.......| .
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 5532210 000000000 0
Q ss_pred -CccccccC----------------------------CC----Cc------eecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 010883 222 -GLDFSAAD----------------------------DG----GY------SFGIFSLKFSTDGRELVAGSSDDCIYVYD 262 (498)
Q Consensus 222 -~~~~~~~~----------------------------~~----~h------~~~i~~~~~s~~g~~l~~g~~dg~i~vwd 262 (498)
...|.... .+ .+ ...+++++.++.|++.+.|...|.|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 00000000 00 11 24688999999999999999999999999
Q ss_pred CCCCeeeEEE---eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE
Q 010883 263 LEANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 339 (498)
Q Consensus 263 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 339 (498)
+.+|-....+ ..|..+|+.++. +.-++.+++++.+|.+++||.. ....+..+. -...++++..+.....++
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~-D~~n~~~vsa~~~Gilkfw~f~----~k~l~~~l~-l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAV-DGTNRLLVSAGADGILKFWDFK----KKVLKKSLR-LGSSITGIVYHRVSDLLA 550 (910)
T ss_pred cccCeeecccccCccccCceeEEEe-cCCCceEEEccCcceEEEEecC----Ccceeeeec-cCCCcceeeeeehhhhhh
Confidence 9999887777 489999999999 4778899999999999999996 444555444 456778888888888999
Q ss_pred EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883 340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419 (498)
Q Consensus 340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 419 (498)
.+..|-.|+++|..+ ...++.+.+|....+- .+|||||++
T Consensus 551 ~~~ddf~I~vvD~~t----------------------------------~kvvR~f~gh~nritd------~~FS~DgrW 590 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVT----------------------------------RKVVREFWGHGNRITD------MTFSPDGRW 590 (910)
T ss_pred hhcCceeEEEEEchh----------------------------------hhhhHHhhccccceee------eEeCCCCcE
Confidence 999999999999987 3566777888744332 377889999
Q ss_pred EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC-CcEEEecC
Q 010883 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEF 476 (498)
Q Consensus 420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D-g~i~iw~~ 476 (498)
|++++.|++|++||+.++.++-.+. -..+++++.|+|+|.+|||+..| .-|++|.-
T Consensus 591 lisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999999999998875 56789999999999999999988 67999963
No 128
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3.4e-25 Score=186.65 Aligned_cols=268 Identities=18% Similarity=0.244 Sum_probs=191.1
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc-ccccc-cccCccccccCCCCceecEEEEEEcCCCCE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL-ANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGRE 248 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~ 248 (498)
....|..++.+.+|+|||.++++|+.|..|+|.|++.--.... ..+.. ..............|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 3456788999999999999999999999999999873211110 00000 000001112233468889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEE--EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE---Eecccc
Q 010883 249 LVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG---VLMGHL 323 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~~ 323 (498)
|++|+.|++|+++|+......+. ......+|.++.|+ |.|.+|+.|....++++||+. ..++.. .-..|.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~----T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVN----TYQCFVSANPDDQHT 261 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEecc----ceeEeeecCcccccc
Confidence 99999999999999976433222 22455689999997 889999999999999999997 333332 234689
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
+.|+++.+++.+++.++++.||.|++||=-+. +++.++........
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----------------------------------rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----------------------------------RCVRTIGNAHGGSE 307 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccH----------------------------------HHHHHHHhhcCCce
Confidence 99999999999999999999999999997663 34444432221122
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-----CCeeeeEEcCCCCeEEEEe-CCCcEEEecCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-----SPVRDCSWHPSQPMLVSSS-WDGDVVRWEFP 477 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~ 477 (498)
+ .+..|+.+|+|+++.+.|..|++|.+.+++++..+.+-. .--+...|+....+++.-. ..+.+.-||..
T Consensus 308 v----cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 308 V----CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred e----eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 2 334567799999999999999999999999998886431 1223445665555555433 23556667766
Q ss_pred CCCC
Q 010883 478 GNGE 481 (498)
Q Consensus 478 ~~~~ 481 (498)
+.+.
T Consensus 384 tadr 387 (430)
T KOG0640|consen 384 TADR 387 (430)
T ss_pred chhh
Confidence 5543
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=193.01 Aligned_cols=287 Identities=18% Similarity=0.236 Sum_probs=218.1
Q ss_pred CEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883 144 SLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 144 ~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
.+++++.. ...|.+|.+........... ..++|.+++-+|+|.+|+.|+..+.|++|.+.+|.....+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------- 120 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence 45665543 45789999987544442222 33489999999999999999899999999999998866553
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCeeeEEEeccCCCeeEEEEeCC-CCCEE
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---------ANKLSLRILAHTSDVNTVCFGDE-SGHLI 292 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l 292 (498)
+|-..|+|+.|+-||.+|++|+.||.|.+|++. +-++...+..|.-+|+++...+. ....|
T Consensus 121 ---------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 121 ---------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred ---------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 456689999999999999999999999999763 23567778899999999988632 35689
Q ss_pred EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 372 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 372 (498)
+++|.|.++++||+. .+..+..+. ....+.+++.+|-++.++.|+.+|.|.+.++........-
T Consensus 192 ~TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~----------- 255 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG----------- 255 (476)
T ss_pred EEecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc-----------
Confidence 999999999999997 666666665 4578999999999999999999999999988764321100
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 452 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 452 (498)
-.....+..+..+..+.+|.....+.+. +++.||.+|++|+.||.|+|||+.+.+++.++....++|+.
T Consensus 256 -------v~~k~~~~~~t~~~~~~Gh~~~~~ITcL----ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 256 -------VNQKGRHEENTQINVLVGHENESAITCL----AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred -------ccccccccccceeeeeccccCCcceeEE----EEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence 0012223345677788888864444443 45559999999999999999999999999998867899999
Q ss_pred eEEcCCCCeEEE-EeCCCcEEEecC
Q 010883 453 CSWHPSQPMLVS-SSWDGDVVRWEF 476 (498)
Q Consensus 453 l~~sp~~~~l~s-~~~Dg~i~iw~~ 476 (498)
+.+.|-.+-.+. -...-.+-.|++
T Consensus 325 L~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 325 LQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred eEeeccccceecccccCccCCchHh
Confidence 999776553333 222333444443
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=8.4e-25 Score=193.81 Aligned_cols=219 Identities=15% Similarity=0.212 Sum_probs=179.9
Q ss_pred CCCccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE----EEEEeecCCCceeEEEEEeCC-CCCeEEEEE
Q 010883 122 NGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSP-DQRHLVYAS 195 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s 195 (498)
.+...|.+|...-+.++|++.. -.|++|+.|++|.+||+..... +.......+|...|..++|+| +..++++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 3445889999999999999975 4789999999999999976432 455566789999999999999 557888999
Q ss_pred CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-eeEEEe
Q 010883 196 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK-LSLRIL 273 (498)
Q Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~ 273 (498)
.|+.+.|||++++ ...... ...+|+.+|.|++|+| ++..||+|+.|++|.+||+++.. ++..+.
T Consensus 248 dd~~L~iwD~R~~-~~~~~~-------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TSKPSH-------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred CCCeEEEEEcCCC-CCCCcc-------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 9999999999974 111111 1126888999999999 66788999999999999998754 567888
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC----------CCceeEEeccccccEEEEEEcCCCCE-EEEEe
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEGITFIDSRGDGRY-LISNG 342 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~~ 342 (498)
+|...|.++.|+|.....|++++.|+.+.+||+..... ..+.+..-.||...|..+.|+|+... |++.+
T Consensus 314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 99999999999999999999999999999999964321 22345667789999999999998764 67888
Q ss_pred CCCcEEEEeCCC
Q 010883 343 KDQAIKLWDIRK 354 (498)
Q Consensus 343 ~dg~i~iwd~~~ 354 (498)
.|+.+.||.+..
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999999874
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.6e-22 Score=181.21 Aligned_cols=288 Identities=17% Similarity=0.284 Sum_probs=213.5
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecC-CCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
..-.+...+..|..+.|+|.+.-|+.....|.+.+|+...+....+.-... ..+..|.|++|.++|. +++|..+|.|.
T Consensus 192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~ 270 (626)
T KOG2106|consen 192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNIL 270 (626)
T ss_pred ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEE
Confidence 334556667888999999987655555567899999999885555443332 2236799999999997 56899999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------------
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-------------- 267 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-------------- 267 (498)
||+..+.+...... .|.+.|.+++...+|. |++|+.|..|..||-.-.+
T Consensus 271 Iw~~~~~~~~k~~~----------------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iR 333 (626)
T KOG2106|consen 271 IWSKGTNRISKQVH----------------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIR 333 (626)
T ss_pred EEeCCCceEEeEee----------------ecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCee
Confidence 99997665433222 3777999999999997 5669999999999832110
Q ss_pred --------------------------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc
Q 010883 268 --------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 321 (498)
Q Consensus 268 --------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 321 (498)
......+|......++.+ ++.+.+++++.|+.+++|+- .++.....
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v~lW~~------~k~~wt~~- 405 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHVRLWND------HKLEWTKI- 405 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceEEEccC------CceeEEEE-
Confidence 011223677788888887 77788999999999999992 23333322
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
-..+..++.|+|.| .++.|...|...+.|.++ +.+.+.....
T Consensus 406 ~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-----------------------------------~~lv~~~~d~-- 447 (626)
T KOG2106|consen 406 IEDPAECADFHPSG-VVAVGTATGRWFVLDTET-----------------------------------QDLVTIHTDN-- 447 (626)
T ss_pred ecCceeEeeccCcc-eEEEeeccceEEEEeccc-----------------------------------ceeEEEEecC--
Confidence 35788899999999 999999999999999987 2222222222
Q ss_pred EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
..+. .+.|+|+|.+||.|+.|+.|+||.+... ....... .|..+|+.+.||+|+++|.+-+-|-.|..|....
T Consensus 448 ~~ls----~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 448 EQLS----VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred CceE----EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 1121 2367789999999999999999998764 3333332 3448999999999999999999999999994443
No 132
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.1e-24 Score=205.52 Aligned_cols=208 Identities=16% Similarity=0.222 Sum_probs=174.4
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeE
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV 200 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i 200 (498)
++...+.+|.+.|..+.||.++ +|++++.|.+||+|++....++..+ .|..-|+|++|+| |.+|+++|+-|+.|
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccce
Confidence 4556789999999999999774 8999999999999999987666653 4666899999999 88999999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-------
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL------- 273 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~------- 273 (498)
+||++...+......+.. -|++++|.|||+..++|+.+|.+++|+....+......
T Consensus 435 RiWsI~d~~Vv~W~Dl~~-----------------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRD-----------------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred EEeecCcCeeEeehhhhh-----------------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999998877655444332 69999999999999999999999999999887765443
Q ss_pred --ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc--EEEEEEcCCCCEEEEEeCCCcEEE
Q 010883 274 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKL 349 (498)
Q Consensus 274 --~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~dg~i~i 349 (498)
.|. .|+.+.|.|.+...+++.+.|..|+|||.+ ....+..++++... -....|+.||++|++++.|..|++
T Consensus 498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred cccCc-eeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 233 799999998777788899999999999997 66777777765432 345678899999999999999999
Q ss_pred EeCCCCC
Q 010883 350 WDIRKMS 356 (498)
Q Consensus 350 wd~~~~~ 356 (498)
|++....
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9986543
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.7e-26 Score=212.17 Aligned_cols=257 Identities=25% Similarity=0.342 Sum_probs=214.7
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
+.+++.+..+-.+++|+.... ..|...|.++..-..++.+++|+.|..+-+|.+........
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~---------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--------- 65 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF---------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--------- 65 (825)
T ss_pred ccccceeeeeeccccccchhh---------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------
Confidence 344555555667788887542 24555677777767788999999999999998765433221
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 302 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 302 (498)
..+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+.++.|+ |-+.++++|+.|+.++
T Consensus 66 -------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 66 -------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLK 137 (825)
T ss_pred -------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccce
Confidence 23688899999999999999999999999999999999999999999999999998 7788999999999999
Q ss_pred EEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883 303 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 382 (498)
Q Consensus 303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
+||.+ ...+...+.+|...+..+.|+|+|++++.++.|..++|||+..
T Consensus 138 iwD~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a---------------------------- 185 (825)
T KOG0267|consen 138 IWDIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA---------------------------- 185 (825)
T ss_pred ehhhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc----------------------------
Confidence 99998 7888999999999999999999999999999999999999987
Q ss_pred cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeE
Q 010883 383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 462 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 462 (498)
+..+..|..|...... +.|.|..-+++.|+.|++|++||+++.+.+.........|.+++|+|++..+
T Consensus 186 ------gk~~~ef~~~e~~v~s------le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 186 ------GKLSKEFKSHEGKVQS------LEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred ------cccccccccccccccc------cccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence 3555566666533222 2466678889999999999999999999999988888999999999999988
Q ss_pred EEEeCCC
Q 010883 463 VSSSWDG 469 (498)
Q Consensus 463 ~s~~~Dg 469 (498)
++|..+.
T Consensus 254 ~~G~q~s 260 (825)
T KOG0267|consen 254 LSGEQIS 260 (825)
T ss_pred ecCchhh
Confidence 8886543
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.7e-23 Score=189.75 Aligned_cols=229 Identities=14% Similarity=0.149 Sum_probs=181.1
Q ss_pred cccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883 113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 192 (498)
Q Consensus 113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 192 (498)
..-++....++...++...+.|++++.+|.+..++.|+.||.+..++...+....... .....+.|.+++|+|++..|+
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecCCccEEE
Confidence 3445666666667778889999999999999999999999988888888775544443 334467899999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883 193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 272 (498)
Q Consensus 193 ~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 272 (498)
.|+.||.|++||+.++........... .+. .+..--|+++.|..++ .|++|...|.|.+||...+.++..+
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d--~l~------k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLD--RLS------KREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeeccc--ccc------cCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh
Confidence 999999999999998876552221110 000 0122358899998777 5999999999999999999999999
Q ss_pred eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
..|.+.|.+++.. ++++.+++++.|+.|..|.................|...|.+++..++ .|++|+.|..+.+-..
T Consensus 242 ~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 242 SCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred hhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 9999999999997 778899999999999988875332222234455678899999999877 8999999999888776
Q ss_pred CC
Q 010883 353 RK 354 (498)
Q Consensus 353 ~~ 354 (498)
+.
T Consensus 319 ~~ 320 (691)
T KOG2048|consen 319 RE 320 (691)
T ss_pred cc
Confidence 65
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=5.6e-24 Score=197.56 Aligned_cols=320 Identities=14% Similarity=0.189 Sum_probs=231.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
..+.+|...|..++|+|.|.+|++.+.|.+-|+|--- .....+.+-.++-|...++|++|-+..-.+++|.....+|+|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence 3568999999999999999999999999999998654 222355566667788899999999977778888889999999
Q ss_pred ECCCCceeccc-----------------ccc------------ccccCcc----------cc------------------
Q 010883 204 DVGSGTMESLA-----------------NVT------------EIHDGLD----------FS------------------ 226 (498)
Q Consensus 204 d~~~~~~~~~~-----------------~~~------------~~~~~~~----------~~------------------ 226 (498)
+....-..... .++ ....+.. ..
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 76421100000 000 0000000 00
Q ss_pred ---ccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC
Q 010883 227 ---AADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 298 (498)
Q Consensus 227 ---~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d 298 (498)
.+...||...|++++.+|+|+++|+++.. ..|++|+..+...+..+..|.-.|+.++|+ +++++|++.+.|
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRD 593 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRD 593 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecC
Confidence 01123899999999999999999998764 459999999998888999999999999998 899999999999
Q ss_pred CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883 299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 378 (498)
Q Consensus 299 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
.++.+|...............+.|..-|..+.|+|++.+|+|++.|++|++|.......
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d--------------------- 652 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD--------------------- 652 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh---------------------
Confidence 99999987533222233444778999999999999999999999999999999877421
Q ss_pred cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-EEEEEecCCeEEEEECCC-------Cc--E---EEEecc
Q 010883 379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVS-------GE--Q---VAALKY 445 (498)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~-------~~--~---~~~~~~ 445 (498)
+.+..+........+....+.+.+.++.. .+++|-..|.|.+|.... +. . +....+
T Consensus 653 -----------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (764)
T KOG1063|consen 653 -----------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG 721 (764)
T ss_pred -----------hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence 11111111111123334444555444443 788899999999999651 11 1 111235
Q ss_pred CCCCeeeeEEcCCC----------CeEEEEeCCCcEEEecCC
Q 010883 446 HTSPVRDCSWHPSQ----------PMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 446 h~~~v~~l~~sp~~----------~~l~s~~~Dg~i~iw~~~ 477 (498)
|.+.|+.+.|.|.. ..|++|+.|..++++++.
T Consensus 722 ~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 722 PDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred hHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 77889999999752 257999999999999875
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.3e-25 Score=189.84 Aligned_cols=264 Identities=17% Similarity=0.215 Sum_probs=203.9
Q ss_pred cccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC
Q 010883 109 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 188 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 188 (498)
.|....+++.-...+.+.+..|.+.|..++++. ..++++++|.+|+.|.++.. .... ... ...+..+.-+..+
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~t-ilg---~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHT-ILG---KSVYLGIDHHRKN 159 (433)
T ss_pred cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-ccee-eec---ccccccccccccc
Confidence 455566677777778899999999999999987 67888999999999998753 2222 222 2257777777777
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe
Q 010883 189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~ 267 (498)
..+++++. .|.|||......+...... ...|.++.|+|.. ..|+++..|+.|.+||+.++.
T Consensus 160 ~~FaTcGe--~i~IWD~~R~~Pv~smswG----------------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~ 221 (433)
T KOG0268|consen 160 SVFATCGE--QIDIWDEQRDNPVSSMSWG----------------ADSISSVKFNPVETSILASCASDRSIVLYDLRQAS 221 (433)
T ss_pred ccccccCc--eeeecccccCCccceeecC----------------CCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence 88888775 5999998765554433322 1268999999955 467777799999999999999
Q ss_pred eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010883 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 347 (498)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i 347 (498)
++..+. ..-.-+.|+|+| +...|++|+.|..++.||++. -..++....+|...|..++|+|.|+-|++|+.|.+|
T Consensus 222 Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 222 PLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSI 296 (433)
T ss_pred ccceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEeccCCCcchhccccccceE
Confidence 887763 344568899995 888899999999999999984 346788899999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883 348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
+||..+.+...... .. .-+...++..||.|.+|+++||.|+
T Consensus 297 RIf~~~~~~SRdiY----------------------------------ht-----kRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIY----------------------------------HT-----KRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred EEeecCCCcchhhh----------------------------------hH-----hhhheeeEEEEeccccEEEecCCCc
Confidence 99999874432211 11 1122335557777999999999999
Q ss_pred eEEEEECCCCcEEE
Q 010883 428 CVYVYDLVSGEQVA 441 (498)
Q Consensus 428 ~i~iwd~~~~~~~~ 441 (498)
.|++|.....+.+.
T Consensus 338 nvRlWka~Aseklg 351 (433)
T KOG0268|consen 338 NVRLWKAKASEKLG 351 (433)
T ss_pred ceeeeecchhhhcC
Confidence 99999976655443
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=5.8e-24 Score=183.86 Aligned_cols=214 Identities=19% Similarity=0.273 Sum_probs=170.3
Q ss_pred cccCCCCceEEEEEcCCC--CEEEEEECCCeEEEEECCCC-------------eEEEEEeecCCCceeEEEEEeCCCC-C
Q 010883 126 PVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSPDQ-R 189 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg--~~la~~~~dg~i~vw~~~~~-------------~~~~~~~~~~~~~~~v~~~~~sp~~-~ 189 (498)
....|.+.|+.+.-++-| .+.|+-+..|.|.||++... .....+....+|...=..++|||-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 445678888888888765 46666678899999998532 1223344556788888999999932 3
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe-
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK- 267 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~- 267 (498)
.|++|..-+.|++|...++....-.. ...+|+..|..++|||. ...|++|+.||+|+|||++.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~-------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQR-------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccccCccccceEeeeeccCceeecCc-------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 47788888899999998876533222 22368889999999994 4589999999999999999883
Q ss_pred --eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCC
Q 010883 268 --LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD 344 (498)
Q Consensus 268 --~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d 344 (498)
++. ...|.+.|+.|.|+ ....+|++|+.||+++|||+|..+ .++++..+.-|..+|++|.|+|. ...|++++.|
T Consensus 293 ~~~~~-~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 293 KAAVS-TKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred cceeE-eeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 333 36899999999998 555599999999999999999776 45899999999999999999995 4678889999
Q ss_pred CcEEEEeCCCC
Q 010883 345 QAIKLWDIRKM 355 (498)
Q Consensus 345 g~i~iwd~~~~ 355 (498)
.+|.+||+...
T Consensus 370 ~QitiWDlsvE 380 (440)
T KOG0302|consen 370 NQITIWDLSVE 380 (440)
T ss_pred CcEEEEEeecc
Confidence 99999999764
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.4e-24 Score=178.26 Aligned_cols=234 Identities=19% Similarity=0.312 Sum_probs=179.2
Q ss_pred CCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEE
Q 010883 174 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 251 (498)
Q Consensus 174 ~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~ 251 (498)
.|.+.|+++...+ .|+++++|+.||.|.+||++.............+..+ .......+|...|.++.|-| |.-.+.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCccceeeeeeeEEeeecCceeec
Confidence 4567899999988 7899999999999999999865421111111111000 11222347999999999999 6668899
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC--CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
++-|.+++|||.++.+....+ ..++.|.+-+++|-. ..++++|..|-.|++.|+. .+.....+.+|.+.|.++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEEE
Confidence 999999999999998876666 456677777776432 3578888899999999998 888999999999999999
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 330 DSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 330 ~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
.|+|...+ |++|+.||.|++||++...
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRras---------------------------------------------------- 222 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRAS---------------------------------------------------- 222 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeeccc----------------------------------------------------
Confidence 99998765 6789999999999998621
Q ss_pred eccccCCCCcEEEEEecCCeEEEEECCCCcE---EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
|.+++.|..+++. +..-..|.+.|+.++|+.++.++++++.|..+++|+...+....
T Consensus 223 ------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 223 ------------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ------------------ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 2233444333322 22334799999999999999999999999999999998876543
No 139
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=2e-23 Score=182.38 Aligned_cols=327 Identities=19% Similarity=0.207 Sum_probs=211.5
Q ss_pred CCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 131 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 131 ~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
..+|+.+.|.+++. .||+|+.|..|++|.++.+ ..+.-......|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 9999999999999988653 2444455667888899999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
....-...............-.......+|...|..++|+|++.++++++.|..+++||+..|+....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 87631110000000000000011122346888999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccC-----------------CCceeEEeccccc----cEEEEEEcCCCCEEEEEe
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNV-----------------KGKPAGVLMGHLE----GITFIDSRGDGRYLISNG 342 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------~~~~~~~~~~~~~----~v~~l~~~~~~~~l~s~~ 342 (498)
|- +.++++++-+.|...+.+.+..... .+...+.+ |.+ -...++|+|+|.+|++.+
T Consensus 173 wD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 173 WD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred cc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhcccCCCCcEEEccc
Confidence 95 8889999999998777766531100 00011111 211 134578899999888754
Q ss_pred C----CCcE-----EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 343 K----DQAI-----KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 343 ~----dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
. .+.+ ++++-.....+........ ...+...+......+........ .+.+
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~--------------k~~lavr~~pVy~elrp~~~~~~----~~~l-- 309 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK--------------KPALAVRFSPVYYELRPLSSEKF----LFVL-- 309 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCC--------------cceEEEEeeeeEEEecccccccc----cccc--
Confidence 2 1222 2222221111100000000 00000000000001111000000 1111
Q ss_pred CCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
|-+-.+|+++. ..|+|||.++..++.... -|-.+|++++|++||..|+..+.||...+-.+...+.-
T Consensus 310 -pyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 310 -PYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -ccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 23445556655 569999999988877764 58889999999999999999999999887766655443
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=6.1e-24 Score=197.38 Aligned_cols=239 Identities=23% Similarity=0.303 Sum_probs=196.1
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEE-EEEcC-CCCE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFST-DGRE 248 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~-~g~~ 248 (498)
...+|...|..+++.+.. .++++|.||++++|+-..++........ +|.+-|.+ +++-+ ++-.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~--------------~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE--------------GPKGFIANSICYAESDKGR 73 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc--------------cCcceeeccceeccccCcc
Confidence 446788788888876544 7889999999999998766654432221 23334444 67765 5556
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEE
Q 010883 249 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 328 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 328 (498)
+++|+.|++|.+|.+.+..+...+.+|...|.|+... .++. +++||.|.++++|-. ++....+.+|...|++
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~~------~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWRI------GELVYSLQGHTASVWA 145 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEecc------hhhhcccCCcchheee
Confidence 9999999999999999999999999999999999975 5555 899999999999985 4666679999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
++.-|++ .+++|+.|.+|++|.-. ..+.++.+|..........
T Consensus 146 v~~l~e~-~~vTgsaDKtIklWk~~------------------------------------~~l~tf~gHtD~VRgL~vl 188 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKTIKLWKGG------------------------------------TLLKTFSGHTDCVRGLAVL 188 (745)
T ss_pred eeecCCC-cEEeccCcceeeeccCC------------------------------------chhhhhccchhheeeeEEe
Confidence 9999887 89999999999999863 5677888887544433221
Q ss_pred eccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
+...+++++.||.|++|++ +|+.+.++.+|..-|.+++..+++..+++++.|++++||+..
T Consensus 189 -------~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 189 -------DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -------cCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 4556899999999999999 899999999999999999988888899999999999999976
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=187.37 Aligned_cols=283 Identities=14% Similarity=0.233 Sum_probs=218.7
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
-.++|.++||+.+.+.||.+-.+|.|.+|++..++.....+.. +....|.+++|++ +..|.+.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 3678999999999999999999999999999998777666554 5566899999994 5567788889999999999887
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--EeccCCCeeEEEEeCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDE 287 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~ 287 (498)
....... ..+.|++++.+|.+..++.|+.||.++.++...++.... +...++.|.+++|+ +
T Consensus 102 ~~~~~d~----------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~ 164 (691)
T KOG2048|consen 102 QKYNIDS----------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-P 164 (691)
T ss_pred eeEEecC----------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec-C
Confidence 6544432 233899999999999999999999888888888876543 33566899999997 8
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEe----cc----ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----MG----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~~----~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
++..+++|+.||.|++||.. .+..+... .+ ...-|+++.|-.+ ..|++|...|+|.+||...+.
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gT--- 236 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGT--- 236 (691)
T ss_pred CccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcc---
Confidence 88889999999999999997 44443311 11 2234677777754 469999999999999998743
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
.+..+..|... ..+++..+++.++++++.|+.|.-|...+++.
T Consensus 237 -------------------------------LiqS~~~h~ad------Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 237 -------------------------------LIQSHSCHDAD------VLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred -------------------------------hhhhhhhhhcc------eeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 33333333321 12234455889999999999999998877643
Q ss_pred ----EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 440 ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 440 ----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
......|...|.+++..++ .|++|+.|+++.+-....
T Consensus 280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 2223478889999999877 899999999988866544
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.1e-25 Score=209.64 Aligned_cols=202 Identities=28% Similarity=0.491 Sum_probs=183.9
Q ss_pred ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883 233 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 233 h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
|...+.++..-..++.+++|+.|-.+-+|.+.....+..+.+|..+|.++.|. ....+|++|+.+|+|++||+. .
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle----e 101 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE----E 101 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-cchhhhcccccCCceeeeehh----h
Confidence 55577888877788899999999999999998888888899999999999997 788899999999999999998 8
Q ss_pred CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
.+.++.+.+|...+..+.|+|-+.+++.|+.|+.+++||++. ..+.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------------------------------~Gc~ 147 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------------------------------KGCS 147 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------------------------------cCce
Confidence 888999999999999999999999999999999999999997 3677
Q ss_pred EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883 393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 472 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~ 472 (498)
..+.+|.....+. .|+|+|++++.|+.|..++|||+..|+.+..|..|.+.|..+.|+|..-++++|+.|++|+
T Consensus 148 ~~~~s~~~vv~~l------~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 148 HTYKSHTRVVDVL------RLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred eeecCCcceeEEE------eecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence 8888877544443 7888999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 010883 473 RWEFPGN 479 (498)
Q Consensus 473 iw~~~~~ 479 (498)
+||+.+-
T Consensus 222 f~dletf 228 (825)
T KOG0267|consen 222 FWDLETF 228 (825)
T ss_pred eecccee
Confidence 9999843
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.5e-24 Score=191.73 Aligned_cols=250 Identities=21% Similarity=0.304 Sum_probs=199.6
Q ss_pred CCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 174 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 174 ~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
.|..-|.++.+|...+++.+|+. |-|+|||+...... .+..+... ....-|.++.+.|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl------------~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL------------NRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccccc------------CcccceeeeEecCCCceEEec
Confidence 56667889999999999999875 67999999754211 11111111 112268999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEE--EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883 253 SSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (498)
+.-.++.|||+....+... +....-.+..++.+ ++.++.+++..||.|.|||++ ....+..+.+|.+.+.||.
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLh----nq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCID 558 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcc----cceeeecccCCCCCceeEE
Confidence 9999999999987654322 33333456778887 889999999999999999998 8889999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
+++||..|.+|+-|.+|+.||++....... |. ...-+|+
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqq-------------------------------------hd----F~SQIfS 597 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------------------------------------HD----FSSQIFS 597 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhh-------------------------------------hh----hhhhhee
Confidence 999999999999999999999998543221 11 1122467
Q ss_pred cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
+.++|++.+|++|-.++.+.|.... +.....+..|.+-|.++.|.+-|+++++.+.|+.+..|...-+...-
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred cccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 7788899999999999999998864 44456667799999999999999999999999999999988776543
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=181.44 Aligned_cols=263 Identities=21% Similarity=0.257 Sum_probs=190.3
Q ss_pred CCCceeEEEEEeCCCC--CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCE
Q 010883 173 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 248 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~--~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~ 248 (498)
..|.+.++.+.-++-+ .+.++-+..|.|+||++...-..........+....-+.....+|...=+.++||| .| .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence 4566678888777754 46666778999999998642110000000001111112233457888889999999 44 4
Q ss_pred EEEEeCCCeEEEEECCCCeee---EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883 249 LVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 325 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 325 (498)
|++|..-+.|++|...++... ..+.+|...|..++|+|.....|++||.||+|+|||+|... .+.....+.|.+.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--KKAAVSTKAHNSD 304 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--ccceeEeeccCCc
Confidence 888888889999999887643 23557999999999999899999999999999999999442 2333344889999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883 326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 405 (498)
Q Consensus 326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
|+.|.|+.+..+|++|+.||+++|||+|..+. ++++..|+.|.... .
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~-------------------------------~~pVA~fk~Hk~pI--t 351 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKS-------------------------------GQPVATFKYHKAPI--T 351 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccC-------------------------------CCcceeEEeccCCe--e
Confidence 99999999888999999999999999998543 47888898888543 4
Q ss_pred EEEeccccCCCCcEEEEEecCCeEEEEECCCCcE----------------EEEeccC--CCCeeeeEEcCCCC-eEEEEe
Q 010883 406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----------------VAALKYH--TSPVRDCSWHPSQP-MLVSSS 466 (498)
Q Consensus 406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----------------~~~~~~h--~~~v~~l~~sp~~~-~l~s~~ 466 (498)
.+.|+|. +...|++++.|.+|.|||+.--.- .+.+--| ...|..+.|++.-+ +|++.+
T Consensus 352 sieW~p~---e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 352 SIEWHPH---EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred EEEeccc---cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 4455554 567889999999999999853210 0112224 34688999999887 888888
Q ss_pred CCCcEEEec
Q 010883 467 WDGDVVRWE 475 (498)
Q Consensus 467 ~Dg~i~iw~ 475 (498)
.||. .||.
T Consensus 429 ~dGf-nVfk 436 (440)
T KOG0302|consen 429 IDGF-NVFK 436 (440)
T ss_pred ccce-eEEE
Confidence 8984 4443
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=185.99 Aligned_cols=195 Identities=21% Similarity=0.239 Sum_probs=159.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEE------------------EeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEE
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQK------------------DILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHI 202 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~------------------~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~i 202 (498)
-|+++|.|+.|..|.|||+.--..+.. .....+|...|.+++|+..- +.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 368999999999999999863211111 11234688888899998754 68889999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
||+.++++..... .|...|.++.|+| ....|++|+.|++|.+.|.+........-...+.|-.
T Consensus 271 WD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 271 WDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred EEcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 9999998866554 2566899999999 5678999999999999999854333333356688999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~ 355 (498)
++|.|.....++++..||+|+-+|+|. .++++.++..|.++|.++++++. ..++++++.|+.|++|++...
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~---~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRN---PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCC---CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 999988889999999999999999993 45899999999999999999875 457889999999999999863
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-24 Score=212.51 Aligned_cols=292 Identities=19% Similarity=0.326 Sum_probs=220.8
Q ss_pred EEEEEcCCCC-EEEEEE----------CCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEeCCCCCe----EEEEECC
Q 010883 135 YVSQFSADGS-LFVAGF----------QASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRH----LVYASMS 197 (498)
Q Consensus 135 ~~~~~s~dg~-~la~~~----------~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~----l~~~s~d 197 (498)
-.++|||++. ++|+|. .+.++.||.+...... .+...........+.++|.+.+.. ||.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3578999986 666543 3455667765432111 111222223346889999997765 8888899
Q ss_pred CeEEEEECCCC---ceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883 198 PIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 198 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~ 273 (498)
|.|.+||...- ....... ....|.+.|..+.|++... .||+|+.+|.|.|||++.-+......
T Consensus 90 G~I~ly~p~~~~~~~~~~~la-------------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~ 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLA-------------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG 156 (1049)
T ss_pred CceEEecchhhccCcchHHHh-------------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence 99999997652 2111111 1225888999999999554 99999999999999998865544432
Q ss_pred --ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc--cEEEEEEcCCC-CEEEEEeCCC---
Q 010883 274 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDG-RYLISNGKDQ--- 345 (498)
Q Consensus 274 --~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~-~~l~s~~~dg--- 345 (498)
...+.|.+++|+....++|++++.+|.+.|||++ ..+++..+..+.. .+..++|+|+. ..|++++.|.
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 2457899999997778899999999999999999 6677766665554 47789999986 3466666553
Q ss_pred cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883 346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 425 (498)
Q Consensus 346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 425 (498)
.|.+||+|... ..++.+.+|. ..++...|++. |..+|++++.
T Consensus 233 viqlWDlR~as---------------------------------sP~k~~~~H~--~GilslsWc~~---D~~lllSsgk 274 (1049)
T KOG0307|consen 233 VIQLWDLRFAS---------------------------------SPLKILEGHQ--RGILSLSWCPQ---DPRLLLSSGK 274 (1049)
T ss_pred eeEeecccccC---------------------------------Cchhhhcccc--cceeeeccCCC---CchhhhcccC
Confidence 59999999743 4566677777 45666666665 6799999999
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCC
Q 010883 426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
|+.|.+|+.++++.+..+......+..+.|+|..+ .++.++-||.|-|+.+.+...
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 99999999999999999988888999999999988 888889999999999987763
No 147
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=178.51 Aligned_cols=293 Identities=16% Similarity=0.211 Sum_probs=202.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
+.+|++...|.|++||..++..+... .++...++.+.|.. ....+.+++.||+|++||++.......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 67889999999999999998666544 45555778888876 4567889999999999999987655544433211
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCee-eEEE-eccCCCeeEEEEeCCCCCEEEEe
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLRI-LAHTSDVNTVCFGDESGHLIYSG 295 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~ 295 (498)
..+..|++.+..++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+|.+.++|++|
T Consensus 117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 126778888778888888763 67799999998776 4444 37999999999999999999999
Q ss_pred eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883 296 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 374 (498)
Q Consensus 296 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 374 (498)
|.||.|.+||+...+.. ..+.....|...|..+.|..++ +.|.+-+...+..+|++...........+...
T Consensus 185 SvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~------- 256 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS------- 256 (376)
T ss_pred cccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch-------
Confidence 99999999999744322 2333344577889999999877 45888888999999999986643322111000
Q ss_pred ecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECC---C---CcEEEEecc-C
Q 010883 375 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLV---S---GEQVAALKY-H 446 (498)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~---~---~~~~~~~~~-h 446 (498)
............++.++. ..+....+.++. -|...++-+. + .+.+..+.+ |
T Consensus 257 -----------------~~d~r~~~~~dY~I~~~~----~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~ 315 (376)
T KOG1188|consen 257 -----------------ADDLRKEDNCDYVINEHS----PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH 315 (376)
T ss_pred -----------------hhhHHhhhhhhheeeccc----CCCcceEEEeccccCceeEEEeeecccccccCccccccCCc
Confidence 000000000011111111 113444444443 4555554333 3 344556665 7
Q ss_pred CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
...|+++.|...+.++.|||.||.+.+|......+
T Consensus 316 ~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e 350 (376)
T KOG1188|consen 316 EEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATE 350 (376)
T ss_pred HHHHHHHhhhcccceeeccCCCceEEEEecCCccc
Confidence 78899999998889999999999999999654433
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=1.3e-22 Score=172.52 Aligned_cols=309 Identities=20% Similarity=0.269 Sum_probs=219.9
Q ss_pred ccccCCCCceEEEEEcC-----CCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCC----CCeEEE
Q 010883 125 WPVDQTTSRAYVSQFSA-----DGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPD----QRHLVY 193 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~-----dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~ 193 (498)
.....|+.+|+.++|++ +-..+|+.+. ..+.+|+....- .+.+......+......++|+-+ ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34567899999999985 2245666654 478899876542 33333334456777888898764 348899
Q ss_pred EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI 272 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~ 272 (498)
++.-|.|+|.|+.+++...... +|...|+.+.+.|+. +++++++.|..|++|++++..++..+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~----------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYR----------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ecceeEEEEEecchhhhcccee----------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 9999999999999887654443 688899999999965 68899999999999999999998876
Q ss_pred e---ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC--------------C-------ceeE---Eecccccc
Q 010883 273 L---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--------------G-------KPAG---VLMGHLEG 325 (498)
Q Consensus 273 ~---~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--------------~-------~~~~---~~~~~~~~ 325 (498)
- +|.+.|.++.|+ .++.+|++++.|.++++|++...... . .+.. +-.-|...
T Consensus 175 GG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred cccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 4 799999999998 88899999999999999998721100 0 0000 11235566
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883 326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 405 (498)
Q Consensus 326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
|-|+.|- |.++++-+-++.|..|............. ++. .+...+..++-.......+
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vk--------------p~e------s~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVK--------------PPE------SATTILGEFDYPMCDIWFI 311 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccC--------------CCc------cceeeeeEeccCccceEEE
Confidence 6666664 47899989999999998844322110000 000 0012233333333223333
Q ss_pred EEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE--EEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
... |.|-++.||.|...|.|++||+...++. .++. .....|...+|+.|+.+|+...+|++|.-||.-
T Consensus 312 rf~----~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 312 RFA----FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEe----ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 333 4456899999999999999999887653 2222 124579999999999999999999999999853
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.8e-24 Score=201.06 Aligned_cols=251 Identities=20% Similarity=0.324 Sum_probs=191.2
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCC
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD 256 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg 256 (498)
...+|...++-..|+.++. ..+.|+.+..........+..... ..-...+..+.|.. +.++||+++..|
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k---------qn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK---------QNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccc---------cceeeehhhcccccchhhhheeecCCC
Confidence 4666777788888887765 367777766543222111110000 00112566788885 567899999999
Q ss_pred eEEEEECCC---CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 257 CIYVYDLEA---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 257 ~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
.|.+||+.. .+.+..+..|...++++.|++...++|++|+.||+|++||++ ......++.+..+.|..+.|+|
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----SKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----cccccccccccchhhhceeecc
Confidence 999999987 566677889999999999999999999999999999999999 6677777888889999999998
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883 334 -DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412 (498)
Q Consensus 334 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (498)
.+..|+++...|.+++||+|... +....+..|.... ++..
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~---------------------------------r~~~k~~AH~GpV------~c~n 227 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPD---------------------------------RCEKKLTAHNGPV------LCLN 227 (839)
T ss_pred CCCceEEEecCCceEEEeeccCch---------------------------------hHHHHhhcccCce------EEEe
Confidence 46789999999999999999743 4455556666322 3336
Q ss_pred cCCCCcEEEEEecCCeEEEEECCCCcE--EEEeccCCCCeeeeEEcCCCC-eEEEEe--CCCcEEEecCCCCCCC
Q 010883 413 YSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSS--WDGDVVRWEFPGNGEA 482 (498)
Q Consensus 413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~-~l~s~~--~Dg~i~iw~~~~~~~~ 482 (498)
|+|++.+||+|+.|+.|+|||..+++. +.++. ...+|..+.|-|+.+ .|++++ .|-.|+|||+...-.+
T Consensus 228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 677999999999999999999986543 34443 357899999999988 677775 5888999999876543
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.8e-21 Score=180.82 Aligned_cols=256 Identities=17% Similarity=0.163 Sum_probs=181.0
Q ss_pred ceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCce
Q 010883 133 RAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTM 210 (498)
Q Consensus 133 ~v~~~~~s~dg~~l-a~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~ 210 (498)
.+.+++|+|+|+.+ ++++.++.|++||..+++...... .+. .+..++|+|+++.++++ +.++.|++||+.+++.
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence 46789999999976 566778999999999875544322 122 35678999999977665 4589999999988654
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 289 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 289 (498)
...... ...+.+++|+|+|++++++..++ .+.+||..+++....+. ....+.+++|+ +++
T Consensus 108 ~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s-~dg 168 (300)
T TIGR03866 108 LAEIPV-----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT-ADG 168 (300)
T ss_pred EeEeeC-----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC-CCC
Confidence 332221 11467899999999999988765 46778998887765543 33456789997 677
Q ss_pred CEEE-EeeCCCeEEEEcCccccCCCceeEEecccc-------ccEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCCCccc
Q 010883 290 HLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNAS 360 (498)
Q Consensus 290 ~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~ 360 (498)
++|+ ++..++.|++||+. .++.+..+..+. .....++|+|+++++++ .+.++.+.+||+++..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~---- 240 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE---- 240 (300)
T ss_pred CEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----
Confidence 7765 55569999999997 555444443221 12346889999998654 4456789999987632
Q ss_pred cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcE
Q 010883 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQ 439 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~ 439 (498)
.+....... ..+.+.|+|+|++|++++ .+|.|.+||+.++++
T Consensus 241 ------------------------------~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 241 ------------------------------VLDYLLVGQ-------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred ------------------------------EEEEEEeCC-------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 222211111 123446788999998874 589999999999999
Q ss_pred EEEeccCCCCeeeeEEcC
Q 010883 440 VAALKYHTSPVRDCSWHP 457 (498)
Q Consensus 440 ~~~~~~h~~~v~~l~~sp 457 (498)
+..++.. ...+.++++|
T Consensus 284 ~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 284 IKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEEEcc-cccceeEeCC
Confidence 9999754 5558888875
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=179.26 Aligned_cols=302 Identities=15% Similarity=0.169 Sum_probs=207.5
Q ss_pred eEEEEEcCCCCEEEEEECCC---e--EEEEECCC-CeEEEEEeecCCCceeEEEEEeCC-------CCCeEEEEECCCeE
Q 010883 134 AYVSQFSADGSLFVAGFQAS---Q--IRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-------DQRHLVYASMSPIV 200 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg---~--i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~s~d~~i 200 (498)
.-.+..-|+.++++++-.+. . |+||+-.. ...++.-..... ...|++|.. .|+++|.|+.|..|
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpa---fPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPA---FPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccC---cchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 34556677777777765432 2 55665443 222222222222 345666643 35799999999999
Q ss_pred EEEECCCCcee-ccccccc----cccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEec
Q 010883 201 HIVDVGSGTME-SLANVTE----IHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILA 274 (498)
Q Consensus 201 ~iwd~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 274 (498)
.|||+.--... ....+.. .............+|+..|.+++|+..- +.||+|+.|.+|.+||+.++++...+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 99998632211 1111110 0000111223345799999999999754 4789999999999999999999999988
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~ 353 (498)
|.+.|.++.|+|..+.+|++|+.|++|.+.|.|.....+ ..-.-.+.|-.++|.|.. ..++++..||+|+-+|+|
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~----~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG----KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----ceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 999999999999999999999999999999998422111 111235778899999864 567788899999999999
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 433 (498)
... +++.+++.|......+ .++.. ...++++++.|+.|.+|+
T Consensus 361 ~~~---------------------------------~~vwt~~AHd~~ISgl--~~n~~---~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 361 NPG---------------------------------KPVWTLKAHDDEISGL--SVNIQ---TPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CCC---------------------------------CceeEEEeccCCcceE--EecCC---CCcceeeccccceEEEEe
Confidence 853 6777778887543333 23222 356899999999999999
Q ss_pred CCCCcE--EEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCC
Q 010883 434 LVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 434 ~~~~~~--~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+..-.. +..-.-.-+...|.++.|+-. .|+.|+..+.++|||+....
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 865433 221111123466778888776 77888888899999998764
No 152
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=176.52 Aligned_cols=300 Identities=16% Similarity=0.147 Sum_probs=223.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d 197 (498)
...+.+|.+-|+++.||.++++||+|+.|..++||+++.- +++. +....|...|.|++|....+.|.+|..+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecCCCc
Confidence 3567899999999999999999999999999999998642 2222 2345677899999999999999999999
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-ee--EEEec
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILA 274 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~--~~~~~ 274 (498)
++|.+-|+++.+.+.+..... ..+.|+.+..+|..+.|++.+.++.|.+||..... .. ..+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~--------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENN--------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ceeEeeecccceeeeeecccC--------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 999999999988766554322 23479999999988899999999999999998655 21 22223
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
.......+.|+|....+|++.+..+-+.+||++.....--....+.+. ...-..+.|+|+|..|++--....-.+||
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 445678899999999999999999999999998332111111111111 12235678999999999887777777888
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc----cCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
+.+.. -.+..+. +.....++..++|. +...+++|+.+-
T Consensus 273 ~~S~R---------------------------------~~V~k~D~N~~GY~N~~T~KS~~F~-----~D~~v~tGSD~~ 314 (609)
T KOG4227|consen 273 FISQR---------------------------------CFVLKSDHNPNGYCNIKTIKSMTFI-----DDYTVATGSDHW 314 (609)
T ss_pred eeccc---------------------------------ceeEeccCCCCcceeeeeeeeeeee-----cceeeeccCccc
Confidence 87621 1112222 11223344445444 344599999999
Q ss_pred eEEEEECCCC-----------------------cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 428 CVYVYDLVSG-----------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 428 ~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
.|++|.+... +.+..+++|.+-++.+.|+|...+|++.+....++||.-.
T Consensus 315 ~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 315 GIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 9999987531 1345678999999999999999999999999999999743
No 153
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=3.4e-23 Score=170.87 Aligned_cols=299 Identities=16% Similarity=0.204 Sum_probs=205.1
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883 119 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198 (498)
Q Consensus 119 ~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~ 198 (498)
+|..+.+.|++|.+.|+++.|..+++ |.+|..-|.|.+|++.+........ ..+...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh--hhccceeeceeecCC-cchhhcCCCc
Confidence 46677888999999999999998876 8889999999999999864333221 145568999998887 5677888999
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-----CC----EEEEEeCCC-eEEEEECCCCee
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GR----ELVAGSSDD-CIYVYDLEANKL 268 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----g~----~l~~g~~dg-~i~vwd~~~~~~ 268 (498)
.+.+|++..+.......+ .++++-|.+. ++ .++.-+... .+.+-|......
T Consensus 78 ~L~lw~ia~s~~i~i~Si-------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSI-------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred eEEEEEccCcceEEEeee-------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 999999987665444332 3344444331 11 111111100 022222222111
Q ss_pred eEEE----eccCCCeeEEEEeCCCC--CEEEEeeCCCeEEEEcCcccc------CCCceeEEeccccccEEEEEEcCCCC
Q 010883 269 SLRI----LAHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLN------VKGKPAGVLMGHLEGITFIDSRGDGR 336 (498)
Q Consensus 269 ~~~~----~~~~~~v~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~ 336 (498)
+... .+..+.+.|..+-...+ -++++|..+|.+.+||+.... ...+.......|..+|.++.+.+.-.
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 1111 13345677776532222 367788899999999997321 11134445567999999999988777
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883 337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 416 (498)
Q Consensus 337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 416 (498)
.=++|+.+..+..|.+......... .....++.... -...+-||
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~----------------------------~~e~~lknpGv--------~gvrIRpD 262 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQI----------------------------RKEITLKNPGV--------SGVRIRPD 262 (323)
T ss_pred CCcCCCccccceeeeeccccCcccc----------------------------cceEEecCCCc--------cceEEccC
Confidence 7788888889999998763211110 11111111110 11234569
Q ss_pred CcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 417 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 417 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
++++|+++.|+.||||..++.++++.++.|...|++++|+|+..++|+++.|++|.+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999999986
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.7e-22 Score=178.58 Aligned_cols=263 Identities=15% Similarity=0.165 Sum_probs=196.4
Q ss_pred ceEEEEEcCCCCEEEE--EECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 133 RAYVSQFSADGSLFVA--GFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~--~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
.+.++.|+.... |++ .+.|..|++|.-.... .+.......+. .-.|++......|+++|+..+.|+|||++...
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 389999988765 443 3457889999765430 11111111121 33444444555899999999999999998554
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-CCCeeEEEEeCCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDES 288 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 288 (498)
+....+ +|...|+++.++....+||+++..|.|.|..+.++.....+... ...|.-+.|++..
T Consensus 113 ~hr~lk----------------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 113 IHRFLK----------------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred Hhhhcc----------------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc
Confidence 433332 57789999999999999999999999999999998877777543 3456689999888
Q ss_pred CCEEEEeeCCCeEEEEcCccccCCCce-eEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883 289 GHLIYSGSDDNLCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
..+|.+++.+|.|.+||+. ...+ ......|..+...|+|+|. ..+|++.+.|..|.+||++....
T Consensus 177 r~lL~~asd~G~VtlwDv~----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--------- 243 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQ----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--------- 243 (673)
T ss_pred ceeeEeeccCCeEEEEecc----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc---------
Confidence 8899999999999999996 3333 3445679999999999995 56788999999999999986321
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEecc
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKY 445 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~ 445 (498)
...+... ......+|+++|.+|++|+..|.|+.||++.. .++..+..
T Consensus 244 -------------------------~~~l~y~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 244 -------------------------TDRLTYS-------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred -------------------------cceeeec-------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 1111111 11123478889999999999999999999864 57888899
Q ss_pred CCCCeeeeEEcCCC
Q 010883 446 HTSPVRDCSWHPSQ 459 (498)
Q Consensus 446 h~~~v~~l~~sp~~ 459 (498)
|...|++++|-|.-
T Consensus 292 h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDASVTRVAFQPSP 305 (673)
T ss_pred cccceeEEEeeecc
Confidence 99999999998764
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=9e-22 Score=181.18 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=99.7
Q ss_pred CccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE--E-EEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 124 PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK--I-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~--~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
.-.+.+|.+.|+.+.|+|- ..+||+|+.|..|+||.+..|.. + .......+..-.|.++.|+|...-|+..+..|.
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 4568899999999999994 46899999999999999986521 1 111223344557899999998877777778899
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~ 264 (498)
++|||+.+++...... +|...|.++.|+.||..|++.+.|..|+|||.+
T Consensus 152 v~i~D~stqk~~~el~----------------~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELS----------------GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred EEEEEcccCceeeccc----------------CCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 9999999887643322 677789999999999999999999999999865
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=180.26 Aligned_cols=309 Identities=19% Similarity=0.219 Sum_probs=204.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 203 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iw 203 (498)
.....|...|..+.|-|....|++++.|.++++||+.++...... ...+|.+.|.+++|.|.. ..+++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 345689999999999996678999999999999999988655543 567899999999999955 578889999999999
Q ss_pred ECCCCceecccc----ccccccC-------ccccccCCCCceecEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCee
Q 010883 204 DVGSGTMESLAN----VTEIHDG-------LDFSAADDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANKL 268 (498)
Q Consensus 204 d~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~h~~~i~~---~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~ 268 (498)
|+.-........ +...+.+ ..-.......+...|.+ +.+..|...||+++. |+.|+|||+.....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 986443211111 0111111 11111112234445555 556678888999887 99999999987654
Q ss_pred eEEE--------ecc---CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE--EEEEEcCCC
Q 010883 269 SLRI--------LAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI--TFIDSRGDG 335 (498)
Q Consensus 269 ~~~~--------~~~---~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~ 335 (498)
..+. ..| .-.+.++.. +..|.+|++.+.|+.|++|++... ...++..+.++...- ..-..+||+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEecccc--CcCchhhccCcccceeeeeeecCCCC
Confidence 3222 123 234666666 366778887788999999999754 334455555443321 122368999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 415 (498)
.++++|+.|...++|.+.+.. .....+.+|...++.+ .|.+. +
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e---------------------------------~~~~~l~Ght~eVt~V--~w~pS--~ 372 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPE---------------------------------APPALLLGHTREVTTV--RWLPS--A 372 (720)
T ss_pred ceEeccCCCcceeeeeecCcc---------------------------------CChhhhhCcceEEEEE--eeccc--c
Confidence 999999999999999998854 3444566676444433 34332 2
Q ss_pred CCcEEEEEecCCeEEEEECCCCc--------------EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGE--------------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
... +++++.|..++||++..+- ....+++|...+..+.|+-.+.+.... .+..++|...
T Consensus 373 ~t~-v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP 445 (720)
T KOG0321|consen 373 TTP-VATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP 445 (720)
T ss_pred CCC-ceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc
Confidence 344 5666999999999986542 123445666666666665444333322 3445555543
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=179.25 Aligned_cols=274 Identities=16% Similarity=0.163 Sum_probs=208.5
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 212 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~ 212 (498)
.|+.++|-|||..|+.+. +..+.+||.+.|..++ ...+|...|.+++|+.||+.+++|+.|..|.+|+-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 799999999999888774 4579999999995554 55789999999999999999999999999999986532221
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 292 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 292 (498)
+ ..|...|.|+.|+|-...|++++-+ ..-+|........ .. .....+.+.+|. .+|++|
T Consensus 89 --k---------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWt-nDGqyl 147 (1081)
T KOG1538|consen 89 --K---------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWT-NDGQYL 147 (1081)
T ss_pred --e---------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeec-CCCcEE
Confidence 1 1367799999999999999998765 3678877654332 11 234578889997 899999
Q ss_pred EEeeCCCeEEEEcCccccCCCceeEE---eccccccEEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 293 YSGSDDNLCKVWDRRCLNVKGKPAGV---LMGHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
+.|-.+|+|.+-+- .+++... --+..++|.+++|+|.. ..+++.....++.++.+...
T Consensus 148 alG~~nGTIsiRNk-----~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--------- 213 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNK-----NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--------- 213 (1081)
T ss_pred EEeccCceEEeecC-----CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------
Confidence 99999999999865 3333333 33577899999999863 45677777777777776541
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 444 (498)
.+-.- .+..--..+..|-++|.+++.|+.|+.+.+|. +.|-.+.++.
T Consensus 214 --------------------------~Igk~------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg 260 (1081)
T KOG1538|consen 214 --------------------------QIGKD------RALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVG 260 (1081)
T ss_pred --------------------------eeccc------ccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecc
Confidence 11100 00000011234667999999999999999997 4677788887
Q ss_pred cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.....|+.++..|+++.++.|+.||+|..|++...
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 77889999999999999999999999999987543
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=2.1e-21 Score=162.39 Aligned_cols=285 Identities=18% Similarity=0.243 Sum_probs=200.1
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEECC-------CeEEEEECCCCeEE------EEEe-ecCCCceeEEEEEeCCCCC
Q 010883 125 WPVDQTTSRAYVSQFSADG-SLFVAGFQA-------SQIRIYDVERGWKI------QKDI-LAKSLRWTVTDTSLSPDQR 189 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg-~~la~~~~d-------g~i~vw~~~~~~~~------~~~~-~~~~~~~~v~~~~~sp~~~ 189 (498)
..+..|.++|+.++-+|-. ++|+++..+ -.+-||.+...... .... ....+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 3466788999999999955 566666542 23679998754211 0000 1113344899999999999
Q ss_pred eEEEEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 010883 190 HLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
.|++.. |+.|.+|++..+... ....... ..++....++-+|+| ||+.+++. .|+++..||+++.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~-----------s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSE-----------SAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccc-----------cccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 988776 788999999877652 1111111 113455788999999 78877765 5789999999988
Q ss_pred eeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCC
Q 010883 267 KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD 344 (498)
Q Consensus 267 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d 344 (498)
+....+. +|...|..+.|+|....+|++|+.||.|++||.| ....++..+.+|...|.++.|+|. .++|++++.|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 7766665 7888999999998778899999999999999998 356788999999999999999995 4678899999
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
..|.+|............... .......+..
T Consensus 281 s~V~Lsca~svSSE~qi~~~~-------------------------dese~e~~ds------------------------ 311 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQIEFED-------------------------DESESEDEDS------------------------ 311 (370)
T ss_pred ceeEEEecccccccccccccc-------------------------ccccCcchhh------------------------
Confidence 999999887643222110000 0000000000
Q ss_pred cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCC
Q 010883 425 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~ 478 (498)
.-.++ -+ ....+.++..|...|.+++||.-.+ .+|+-+.||.+.|=.++.
T Consensus 312 -eer~k--pL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 312 -EERVK--PL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred -HHhcc--cc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 00000 01 1123556778999999999999888 677889999999877653
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-21 Score=174.40 Aligned_cols=275 Identities=15% Similarity=0.240 Sum_probs=195.5
Q ss_pred CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE--ECCCeEEEEECCCCceeccccccccccCcccccc
Q 010883 151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 228 (498)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (498)
....+++||+................ .+.++.|+.... |+++ +.|..+++|.-... ...+.......
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~-------- 78 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRKLT-------- 78 (673)
T ss_pred cCCceEEeecccccCccccccCCCCC-cceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeeccc--------
Confidence 34469999987653333332222222 489999987664 5544 45778889875432 11111111100
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc
Q 010883 229 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 308 (498)
Q Consensus 229 ~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 308 (498)
+. .-.|++......++++|+..+.|.|||+....+.+.+..|.+.|+++.|+ ..+.+|++++..|.|.|..+.
T Consensus 79 ---gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~- 151 (673)
T KOG4378|consen 79 ---GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTK- 151 (673)
T ss_pred ---cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecc-
Confidence 01 33455555556899999999999999999777777888999999999998 788999999999999999986
Q ss_pred ccCCCceeEEeccccc-cEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 309 LNVKGKPAGVLMGHLE-GITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
.+.....+....+ .|.-+.|+|..++ |.+++.+|.|.+||+.......
T Consensus 152 ---t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~--------------------------- 201 (673)
T KOG4378|consen 152 ---TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF--------------------------- 201 (673)
T ss_pred ---cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc---------------------------
Confidence 5444555554433 4568899997765 5578899999999998743211
Q ss_pred CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEe
Q 010883 387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 466 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~ 466 (498)
.....|.. ....++|+|. +..+|++.+.|..|++||+.+.+...++. ...+...++|+++|.+|+.|.
T Consensus 202 ------~~~~~HsA--P~~gicfsps---ne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 202 ------HASEAHSA--PCRGICFSPS---NEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ------chhhhccC--CcCcceecCC---ccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec
Confidence 11223331 2223344544 66788899999999999999887777775 456899999999999999999
Q ss_pred CCCcEEEecCCCCCCCCCc
Q 010883 467 WDGDVVRWEFPGNGEAAPP 485 (498)
Q Consensus 467 ~Dg~i~iw~~~~~~~~~~~ 485 (498)
..|.|..||+...+.+...
T Consensus 270 s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CCceEEEEecccCCCCceE
Confidence 9999999999987765443
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-22 Score=196.05 Aligned_cols=254 Identities=18% Similarity=0.272 Sum_probs=196.9
Q ss_pred CCCCceEEEEEcCCCCE----EEEEECCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeE
Q 010883 129 QTTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIV 200 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~----la~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i 200 (498)
....+-+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+. +||+|+.||.|
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 34667899999998876 88899999999999875 444444556678999999999999665 99999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCC--
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTS-- 277 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-- 277 (498)
.|||+..-+........ .-...|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+.+
T Consensus 142 ~iWDlnn~~tP~~~~~~--------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQ--------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred EEeccCCcCCCCCCCCC--------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999874432222100 12237999999974 45788889999999999999988887766554
Q ss_pred CeeEEEEeCCCCCEEEEeeCCC---eEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 010883 278 DVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~ 353 (498)
.+..++|+|.+...|++++.|. .|.+||+| ....++..+.+|..+|.++.|.+.+ .+|++++.|+.|.+|+..
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeeccc---ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 5788999988788888887764 69999998 3456778889999999999999865 889999999999999998
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 433 (498)
+. +.+..+.... ..+..+.|++. +...+++++.||.|-||.
T Consensus 285 tg----------------------------------Evl~~~p~~~--nW~fdv~w~pr---~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 285 TG----------------------------------EVLGELPAQG--NWCFDVQWCPR---NPSVMAAASFDGKISIYS 325 (1049)
T ss_pred Cc----------------------------------eEeeecCCCC--cceeeeeecCC---Ccchhhhheeccceeeee
Confidence 83 3333333322 23344555554 556899999999999999
Q ss_pred CCCCc
Q 010883 434 LVSGE 438 (498)
Q Consensus 434 ~~~~~ 438 (498)
+....
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87654
No 161
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.5e-21 Score=163.27 Aligned_cols=210 Identities=22% Similarity=0.277 Sum_probs=157.3
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--E--EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883 229 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--L--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 304 (498)
Q Consensus 229 ~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vw 304 (498)
...+|...|++++|+.||+.|++++.|+.|++|++..-... + +..-.-+..+.+.|.|....++++.-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 34589999999999999999999999999999998763211 1 1111223568899986666677777777899999
Q ss_pred cCccccCCCce---------eEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceee
Q 010883 305 DRRCLNVKGKP---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 375 (498)
Q Consensus 305 d~~~~~~~~~~---------~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 375 (498)
.+.... .+.. ..--..|.-.+..+-...++.+|++++.|..|.+|+++.
T Consensus 161 k~~K~~-dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG--------------------- 218 (420)
T KOG2096|consen 161 KLVKKT-DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG--------------------- 218 (420)
T ss_pred Eeeecc-cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC---------------------
Confidence 875221 1111 011123556677777888899999999999999999984
Q ss_pred cCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC---C-----cEEEEeccCC
Q 010883 376 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---G-----EQVAALKYHT 447 (498)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~-----~~~~~~~~h~ 447 (498)
+.+..+...... .+..+.||+|++|++++..-.|++|.+-- | ..+..+++|.
T Consensus 219 --------------q~L~~idtnq~~------n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 219 --------------QLLQSIDTNQSS------NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred --------------ceeeeecccccc------ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 444444433211 12336789999999999999999998632 2 3466788999
Q ss_pred CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
..|..++|+++...++|.+.||+++|||.+-..
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 999999999999999999999999999987543
No 162
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.8e-21 Score=171.67 Aligned_cols=224 Identities=14% Similarity=0.258 Sum_probs=162.9
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV 200 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i 200 (498)
....|.+|++-|+|++|+.||.+||+|+.|-.+.|||.-..+.++. ...+|...|.++.|.| +.+++++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3567899999999999999999999999999999999986555443 4468888999999999 45788999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee----------
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLS---------- 269 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~---------- 269 (498)
+++|+...+.... ..+.......-..|...|..++-.|++ ..+.+++.||+|+-+|++....-
T Consensus 120 ~lfdl~~~~~~~~------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 120 KLFDLDSSKEGGM------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred EEEeccccccccc------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 9999985332111 111111122223577789999999988 78999999999999999763210
Q ss_pred EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc----CCC----------ceeEEec-ccc-----------
Q 010883 270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VKG----------KPAGVLM-GHL----------- 323 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~----~~~----------~~~~~~~-~~~----------- 323 (498)
..+...--...|+..+|.+..+|++|+.|-..++||.+... ..+ .++..+. +|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 11112223567899999999999999999999999954110 000 0111111 121
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
..++.+.|+|+|.-|++.-....|+++|+..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1256788999998888776667899999876
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-20 Score=183.43 Aligned_cols=310 Identities=20% Similarity=0.226 Sum_probs=216.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEEECC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd~~ 206 (498)
+...+-..+.|+|-...++++...-.|+|||.+.+..+............|+.+.+-. |..++++++.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3444667889999999999998777899999999877766655555566899999865 55789999999999999843
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEe
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG 285 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~ 285 (498)
.... ...++.....++.-... +-.+.=.-+.|.....+|++++.-..|+|||......+..+. +....|+++.-.
T Consensus 1142 ~~~~-~~~eLVTaw~~Ls~~~~---~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1142 ADKW-KKPELVTAWSSLSDQLP---GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred cccc-CCceeEEeeccccccCc---cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc
Confidence 2210 00111111111100000 000111446788766677777778899999999888777665 445677888776
Q ss_pred CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc--EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
...++.+++|..||.|++||.|... ....+...+.|... |..+.+.+.|- .|++|+.||.|++||++......
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--- 1293 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--- 1293 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---
Confidence 5678999999999999999998654 33567788888887 99999988765 49999999999999999842111
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
..+...|..... ...++...++...+|+|+. +.|.||++ .|+.+..
T Consensus 1294 -----------------------------~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~ 1339 (1387)
T KOG1517|consen 1294 -----------------------------FLTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNI 1339 (1387)
T ss_pred -----------------------------cceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEec-Chhhhcc
Confidence 011111110000 0112233446788999998 99999998 4555555
Q ss_pred eccC-------CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 443 LKYH-------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 443 ~~~h-------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
++.+ .+.+.+++|+|...+||.|+.|.+|.||......
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 4422 3578999999999999999999999999876543
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-20 Score=160.25 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=175.7
Q ss_pred EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeE
Q 010883 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 258 (498)
Q Consensus 179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i 258 (498)
..|+.|++.|.+||+|+.||.|.|||+.+......+. +|..+|.+++||+||+.|++++.|..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls----------------aH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS----------------AHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh----------------ccccceeEEEecCCCCEeeeecCCcee
Confidence 7889999999999999999999999998866433322 688899999999999999999999999
Q ss_pred EEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------cccEEEEEEc
Q 010883 259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSR 332 (498)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~ 332 (498)
.+||+..+.++.++ ...++|..+.|+|.+.+.+++.-.+..-.+-++. . +....... ...-.+..|.
T Consensus 90 ~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s----~--~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS----D--PKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred EEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEec----C--CceeeccCCCcccccccccccccc
Confidence 99999999988887 5778999999998877777766655555555553 1 11111111 1112233588
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883 333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (498)
+.|++|++|...|.+.++|..+... +..++-.. ...+... .
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~----------------------------------vas~rits-~~~IK~I----~ 203 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLEC----------------------------------VASFRITS-VQAIKQI----I 203 (405)
T ss_pred CCCCEEEEecCcceEEEEecchhee----------------------------------eeeeeech-heeeeEE----E
Confidence 8999999999999999999988432 23222221 1112222 3
Q ss_pred cCCCCcEEEEEecCCeEEEEECCCC-------c--EEEEec--cCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883 413 YSTGQKYIYTGSHDSCVYVYDLVSG-------E--QVAALK--YHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 480 (498)
Q Consensus 413 ~s~~~~~l~~g~~dg~i~iwd~~~~-------~--~~~~~~--~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~~~ 480 (498)
++..|++|+.-+.|..|+.|++..- + +.+.++ -....-.+++|+.+|.+++.++ .-..++||+-..+.
T Consensus 204 ~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred EeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc
Confidence 4447999999999999999997621 1 112221 1123456789999999888776 34579999987775
Q ss_pred CCC
Q 010883 481 EAA 483 (498)
Q Consensus 481 ~~~ 483 (498)
...
T Consensus 284 LVK 286 (405)
T KOG1273|consen 284 LVK 286 (405)
T ss_pred eee
Confidence 543
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-21 Score=173.71 Aligned_cols=321 Identities=18% Similarity=0.254 Sum_probs=240.1
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV 200 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i 200 (498)
....|..|.+-|..+.|+..|..|++|+.|..|.+||...+..... ...+|...|....|-| +.+-|++++.||.|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCce
Confidence 3467899999999999999999999999999999999998754443 4567888898889998 45789999999999
Q ss_pred EEEECCCCceec-cccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEe---cc
Q 010883 201 HIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AH 275 (498)
Q Consensus 201 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~---~~ 275 (498)
++=.+....... ... ...|.++|.-++.-|+. ..|.+++.|+.+.-+|+.++.+...+. .+
T Consensus 212 r~s~i~~t~~~e~t~r--------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 212 RVSEILETGYVENTKR--------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred eeeeeccccceeccee--------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 987764332222 221 22477789999999965 468899999999999998876543332 33
Q ss_pred CC---CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC--CceeEEecc------ccccEEEEEEcCCCCEEEEEeCC
Q 010883 276 TS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLMG------HLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 276 ~~---~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
.. ....++..|.+.+.+++|+.|..+++||.+..... ...+..+.. ..-.|++++|+.++.-|++...|
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD 357 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND 357 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc
Confidence 33 56788888888889999999999999998744321 112222222 23469999999888888888888
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE-EEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-TYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 423 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 423 (498)
-.|+++.-........... .+..+.+. .|++|....++..+- .|.|...|+++|
T Consensus 358 e~IYLF~~~~~~G~~p~~~----------------------s~~~~~~k~vYKGHrN~~TVKgVN---FfGPrsEyVvSG 412 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPS----------------------SPREQYVKRVYKGHRNSRTVKGVN---FFGPRSEYVVSG 412 (559)
T ss_pred cceEEeccccccCCCCCCC----------------------cchhhccchhhcccccccccceee---eccCccceEEec
Confidence 8899994332211000000 00012333 388998777765544 356688999999
Q ss_pred ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
+.=|.|.||+-.+++.+..+.+-..-|+||.=+|--+.||++|-|..|+||...+.+....
T Consensus 413 SDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~ 473 (559)
T KOG1334|consen 413 SDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATE 473 (559)
T ss_pred CccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccC
Confidence 9999999999999999988887777999999999999999999999999998866555443
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=9.9e-20 Score=152.62 Aligned_cols=288 Identities=18% Similarity=0.259 Sum_probs=202.0
Q ss_pred CceEEEEEcC--C-CCEEEEEEC----CCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCC-----eEEEEECC
Q 010883 132 SRAYVSQFSA--D-GSLFVAGFQ----ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQR-----HLVYASMS 197 (498)
Q Consensus 132 ~~v~~~~~s~--d-g~~la~~~~----dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~s~d 197 (498)
-+++++.||. + +-+||.|+. .+.|.|-.+. +++.+.. ....|..+++.+.|.|+.. +||+.+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccccCcchhhccc--
Confidence 3577888883 3 347888874 4567776554 3333322 2257888999999999873 555543
Q ss_pred CeEEEEECCCC--ceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe---eeEE
Q 010883 198 PIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLR 271 (498)
Q Consensus 198 ~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~---~~~~ 271 (498)
..+++|.+... +...... +.......+..++++..|+. +-++|.+.+-|.+..|||++++. ....
T Consensus 121 D~LRlWri~~ee~~~~~~~~---------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSV---------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred CeEEEEeccCcCCceehhhh---------hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 47999998743 2211111 11122234566999999997 67789999999999999999873 3567
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCC-CcEEE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD-QAIKL 349 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d-g~i~i 349 (498)
+.+|...|..++|.....+.|++.+.||.||+||+|... ....+..-.....+...++|++ |.+++|+-..| ..|.|
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 779999999999986667899999999999999999554 2223333333356788899987 45677776665 46999
Q ss_pred EeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeE
Q 010883 350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 429 (498)
Q Consensus 350 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 429 (498)
.|+|... ..+..+++|.. .+....|.|. ....|++++.|..+
T Consensus 271 LDiR~P~---------------------------------tpva~L~~H~a--~VNgIaWaPh---S~~hictaGDD~qa 312 (364)
T KOG0290|consen 271 LDIRVPC---------------------------------TPVARLRNHQA--SVNGIAWAPH---SSSHICTAGDDCQA 312 (364)
T ss_pred EEecCCC---------------------------------cceehhhcCcc--cccceEecCC---CCceeeecCCcceE
Confidence 9999743 56777888874 3444556665 56789999999999
Q ss_pred EEEECCCCc------EEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEE
Q 010883 430 YVYDLVSGE------QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVR 473 (498)
Q Consensus 430 ~iwd~~~~~------~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~i 473 (498)
.|||+.+.- ++..+. -.+.|+.+.|++..+ +++.+. ++.+.+
T Consensus 313 liWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 313 LIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999997632 233333 457899999997655 666664 445544
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3e-20 Score=165.05 Aligned_cols=255 Identities=19% Similarity=0.246 Sum_probs=182.1
Q ss_pred CCCceeEEEEEeCCCC--CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEE
Q 010883 173 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGREL 249 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~--~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l 249 (498)
.-+.+.|++++|+|.. +++|+|...|.|-+||+.+.+..... +. -...|..+|.++.|+| +-..+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~-----------~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-VY-----------LFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-eE-----------EeccCCccccceEecCCChhhe
Confidence 3455689999999954 58888889999999999633221110 00 0125778999999999 44679
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883 250 VAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 327 (498)
++.+.||+|++-|++.+.....+. .....+..+.|+ .+...++.+..=|...+||++.. +.....+.-|...|+
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~---~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTD---GSEYENLRLHKKKIT 326 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeecC---Cccchhhhhhhcccc
Confidence 999999999999998875433332 244566778886 55666777777779999999933 333555667888999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883 328 FIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 406 (498)
Q Consensus 328 ~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
.++++|-. .+|++++.|++++|||++....... ++...-.|. ..+..
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------------------------p~lst~~Hr--rsV~s 374 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------------------------PFLSTLPHR--RSVNS 374 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCC------------------------------cceeccccc--ceeee
Confidence 99999954 5789999999999999998654332 111112232 23333
Q ss_pred EEeccccCCCCcEEEEEecCCeEEEEECC----CCcEEEEeccCCC------CeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLV----SGEQVAALKYHTS------PVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~------~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
. .|||.+..|++.+.|..|+|||.. .-.+..++. |.. ......|.|+..++++|-.-..|-|+|-
T Consensus 375 A----yFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 375 A----YFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred e----EEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 3 455566669999999999999983 333444443 321 2345689999999999999889999998
Q ss_pred CCCC
Q 010883 477 PGNG 480 (498)
Q Consensus 477 ~~~~ 480 (498)
..+.
T Consensus 450 ~~~q 453 (498)
T KOG4328|consen 450 NGGQ 453 (498)
T ss_pred CCCE
Confidence 7765
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2e-20 Score=159.37 Aligned_cols=252 Identities=19% Similarity=0.233 Sum_probs=188.2
Q ss_pred CCCCceEEEEEcCCC----CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEE
Q 010883 129 QTTSRAYVSQFSADG----SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 203 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg----~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iw 203 (498)
.|...-+.++|+-|- .+||+|+.-|.|+|.|+.++.... ...+|.+.|+.+.|.|+. ++++++|.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 578889999998764 479999999999999999874444 335788899999999965 788999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--------------
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------------- 269 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-------------- 269 (498)
++++..++.++... .||.+.|.++.|+++|.+|++++.|.+|.+|++...+..
T Consensus 164 nI~~~~Cv~VfGG~-------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGV-------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred eccCCeEEEEeccc-------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999988776543 378889999999999999999999999999999843210
Q ss_pred --------E------EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc----------CCCceeEEecccccc
Q 010883 270 --------L------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----------VKGKPAGVLMGHLEG 325 (498)
Q Consensus 270 --------~------~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~ 325 (498)
. +-.-|...|-|+.|. ++++++-+-++.|..|..-... .....+..+.-....
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 0 112477788888886 6899999999999999872111 111223334434445
Q ss_pred EEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 326 ITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 326 v~~l~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
|..+. |.|-++.||.|...|.|.+||++....... .++..+....+
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~--------------------------------ttl~~s~~~~t 355 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC--------------------------------TTLTHSKSGST 355 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC--------------------------------ceEEeccccce
Confidence 66655 456688999999999999999998543211 11111111111
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
....+||.||.+|+..+.|+.|.-||..
T Consensus 356 ----VRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 356 ----VRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ----eeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 2233677899999999999999999954
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=4.8e-18 Score=165.94 Aligned_cols=292 Identities=32% Similarity=0.505 Sum_probs=222.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEe-CCCCC-eEEEEEC-CCeEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH 201 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~-sp~~~-~l~~~s~-d~~i~ 201 (498)
.+..|...+.++.|.+.+..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998875 3333222111 35666777 88887 5555444 89999
Q ss_pred EEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEeccCCCe
Q 010883 202 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 202 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
+|+... ........ .|...|..++|+|++..+++++. ++.+++|++..+..+..+..|...|
T Consensus 138 ~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 138 LWDLSTPGKLIRTLE----------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred EEEecCCCeEEEEEe----------------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 999987 33222221 35668999999999998888886 9999999999988888888899999
Q ss_pred eEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeE-EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883 280 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 280 ~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
.+++|+ +++. ++++++.|+.|++||.. .+.... .+.+|.... ...|+|++..+++++.|+.+++|+++....
T Consensus 202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 202 SSLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999998 6666 55555999999999876 556666 688888775 448999998999999999999999987431
Q ss_pred ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883 358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437 (498)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 437 (498)
.+..+..|. ..+... .+.|++..+++++.|+.+.+||..+.
T Consensus 276 ---------------------------------~~~~~~~~~--~~v~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 276 ---------------------------------LLRTLSGHS--SSVLSV----AFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred ---------------------------------EEEEEecCC--ccEEEE----EECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 122223332 122222 45557788888998999999999888
Q ss_pred cEEEEec--cCCCCeeeeEEcCCCCeEEEE-eCCCcEEEecCCCCC
Q 010883 438 EQVAALK--YHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGNG 480 (498)
Q Consensus 438 ~~~~~~~--~h~~~v~~l~~sp~~~~l~s~-~~Dg~i~iw~~~~~~ 480 (498)
....... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 8776665 788889999994332455555 688999999998775
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.7e-19 Score=151.29 Aligned_cols=252 Identities=20% Similarity=0.327 Sum_probs=184.1
Q ss_pred ceeEEEEEeCC--C-CCeEEEEEC----CCeEEEEECC--CCceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883 176 RWTVTDTSLSP--D-QRHLVYASM----SPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 246 (498)
Q Consensus 176 ~~~v~~~~~sp--~-~~~l~~~s~----d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g 246 (498)
.+++.++.|+. + .-+|+.|+. .+.|.|..+. +++...... ..|..+++.+.|.|+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~---------------fd~~YP~tK~~wiPd~ 108 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN---------------FDHPYPVTKLMWIPDS 108 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC---------------CCCCCCccceEecCCc
Confidence 34678888884 3 347777774 4566666554 233222221 2477799999999976
Q ss_pred C-----EEEEEeCCCeEEEEECCCCeeeE----E-----EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883 247 R-----ELVAGSSDDCIYVYDLEANKLSL----R-----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 247 ~-----~l~~g~~dg~i~vwd~~~~~~~~----~-----~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
. +||+. +..+++|.+...+... . -..+..++++..|+.-+.+++.+++-|-++.|||+.... .
T Consensus 109 ~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~ 185 (364)
T KOG0290|consen 109 KGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-S 185 (364)
T ss_pred cccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-c
Confidence 3 44443 3469999987422111 1 124668999999998899999999999999999998331 3
Q ss_pred CceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce
Q 010883 313 GKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 391 (498)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
+.....+.+|...|..++|...+ +.|++.+.||.+++||+|.... .
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---------------------------------S 232 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---------------------------------S 232 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---------------------------------c
Confidence 34567788999999999999855 5789999999999999998542 2
Q ss_pred EEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-CeEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCC
Q 010883 392 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWD 468 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~D 468 (498)
...|+.......+.+..++.. |-+++|+-..| ..|.|.|++. ..++.++++|.+.|+.++|.|... .|.|+|+|
T Consensus 233 TIIYE~p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred eEEecCCCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 223333333345555555554 67788876655 5799999986 567899999999999999999776 99999999
Q ss_pred CcEEEecCCCCCC
Q 010883 469 GDVVRWEFPGNGE 481 (498)
Q Consensus 469 g~i~iw~~~~~~~ 481 (498)
..+.|||+.....
T Consensus 310 ~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 310 CQALIWDLQQMPR 322 (364)
T ss_pred ceEEEEecccccc
Confidence 9999999986544
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.7e-18 Score=141.67 Aligned_cols=281 Identities=16% Similarity=0.226 Sum_probs=190.4
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCC-------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..|++-+++|.+++|++|..+|.|-+..+.+- ...........|.++|..++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 34667789999999999999999999987641 1112233447899999999997 45666665 59999998
Q ss_pred CCCCce----eccccccccc-cCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 205 VGSGTM----ESLANVTEIH-DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 205 ~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
...... ........+. .+. -.--.|+++...|..+-++.++.|+.++-||+++|+..+.+++|++.|
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~--------~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYv 159 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDA--------VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYV 159 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCc--------ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCccee
Confidence 754322 1121111111 000 011168999999877767777799999999999999999999999999
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc---------cc-ccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------HL-EGITFIDSRGDGRYLISNGKDQAIKL 349 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~-~~v~~l~~~~~~~~l~s~~~dg~i~i 349 (498)
.++.-- .....+++|+.||++++||.+ +.+.+..+.. |- ..|-+++.+ ..++++|+ ...+.+
T Consensus 160 H~vv~R-~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lsl 231 (325)
T KOG0649|consen 160 HSVVGR-NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSL 231 (325)
T ss_pred eeeeec-ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeE
Confidence 999884 445567899999999999998 6666655542 21 235566554 45677654 457999
Q ss_pred EeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeE
Q 010883 350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 429 (498)
Q Consensus 350 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 429 (498)
|.++..... .+..+.++..... | +...+++++..+.|
T Consensus 232 whLrsse~t--------------------------------~vfpipa~v~~v~---------F--~~d~vl~~G~g~~v 268 (325)
T KOG0649|consen 232 WHLRSSEST--------------------------------CVFPIPARVHLVD---------F--VDDCVLIGGEGNHV 268 (325)
T ss_pred EeccCCCce--------------------------------EEEecccceeEee---------e--ecceEEEeccccce
Confidence 999985432 2222233322111 1 35678888888889
Q ss_pred EEEECCCCcEEEEeccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEec
Q 010883 430 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWE 475 (498)
Q Consensus 430 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw~ 475 (498)
.-|.+ +|.............++..|+..- ++|-.++..+.+.|+.
T Consensus 269 ~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 269 QSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 99987 566555555555556666665433 3555666677777653
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=1.9e-18 Score=162.07 Aligned_cols=283 Identities=12% Similarity=0.156 Sum_probs=173.7
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCC-CceeccccccccccCc
Q 010883 146 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS-GTMESLANVTEIHDGL 223 (498)
Q Consensus 146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~ 223 (498)
+++...++.|.+|++.+...+....... .......++++|++++|++++ .++.|.+|++.. +.........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence 3344678999999996432222211111 223577889999999987765 478899999863 3322111111
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe----eeEEEeccCCCeeEEEEeCCCCCEEE-EeeC
Q 010883 224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIY-SGSD 297 (498)
Q Consensus 224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~ 297 (498)
.......++|+|++++|++++. ++.|.+|++.+.. .+..+ .+.....+++++ +++++++ +...
T Consensus 78 ---------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~-p~g~~l~v~~~~ 146 (330)
T PRK11028 78 ---------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANID-PDNRTLWVPCLK 146 (330)
T ss_pred ---------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeC-CCCCEEEEeeCC
Confidence 0113567999999998888764 7899999997432 22222 233456778897 6666664 5556
Q ss_pred CCeEEEEcCccccCCC-c--eeEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCCCccccccCcccccccce
Q 010883 298 DNLCKVWDRRCLNVKG-K--PAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373 (498)
Q Consensus 298 dg~i~vwd~~~~~~~~-~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 373 (498)
++.|.+||+.....-. . ...... .......+.|+|++++++++.. ++.|.+|++.......
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-------------- 211 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-------------- 211 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE--------------
Confidence 7999999996311000 0 001111 1234678999999999988776 8999999997421100
Q ss_pred eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCc----EEEEeccCCC
Q 010883 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGE----QVAALKYHTS 448 (498)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~----~~~~~~~h~~ 448 (498)
..+..+.................++|++++++++.. ++.|.+|++.... .+..... ..
T Consensus 212 ----------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~ 274 (330)
T PRK11028 212 ----------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ET 274 (330)
T ss_pred ----------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cc
Confidence 011111110000000001112356789999999865 7899999986543 2222222 13
Q ss_pred CeeeeEEcCCCCeEEEEeC-CCcEEEecCCC
Q 010883 449 PVRDCSWHPSQPMLVSSSW-DGDVVRWEFPG 478 (498)
Q Consensus 449 ~v~~l~~sp~~~~l~s~~~-Dg~i~iw~~~~ 478 (498)
....+.|+|+|++|+++.. +++|.+|+++.
T Consensus 275 ~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 275 QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 4568999999998887775 89999998864
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=7.5e-21 Score=180.39 Aligned_cols=293 Identities=15% Similarity=0.254 Sum_probs=218.6
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..|.+|.++|+|+.|...|.++++|+.|..|+||..+++.++. ...+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3567999999999999999999999999999999999875544 5679999999999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE----e-ccCCCe
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----L-AHTSDV 279 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~----~-~~~~~v 279 (498)
+..+..+.+.. ||++.|++++|+|-. +.+.||++++||..- ...... . .....+
T Consensus 261 l~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 261 LPDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred cCCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccce
Confidence 99988766654 799999999999954 677899999999871 111111 0 123455
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCc
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
.++.|. ..+.-+++|+.|+.-..|...... .+...+..+..+.+. .+.+++-.+-.+++|++-++
T Consensus 320 ~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g--- 385 (1113)
T KOG0644|consen 320 DSILFE-NNGDRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG--- 385 (1113)
T ss_pred eeeecc-ccccccccccCCcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccc---
Confidence 666775 677889999999999988875221 122222222222222 35566667778999998873
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
+.++...+|.....+.. ++|. +.+...+++.||...|||+..|.
T Consensus 386 -------------------------------~l~H~l~ghsd~~yvLd--~Hpf---n~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 386 -------------------------------QLLHNLMGHSDEVYVLD--VHPF---NPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred -------------------------------hhhhhhcccccceeeee--ecCC---CcHhhhhccCCCceEeeecccCC
Confidence 44555556664444443 2332 56778899999999999999998
Q ss_pred EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccchhceeeceec
Q 010883 439 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFY 497 (498)
Q Consensus 439 ~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~f~ 497 (498)
+++.+.-..+.+.+.+||+||..++....-|.++|.....++ ..++.+..+||
T Consensus 430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~------s~k~ak~dqff 482 (1113)
T KOG0644|consen 430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK------SQKKAKYDQFF 482 (1113)
T ss_pred cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc------cccccccceEe
Confidence 877665335677888999999999999888999998765443 23345555555
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.3e-19 Score=166.08 Aligned_cols=243 Identities=17% Similarity=0.226 Sum_probs=185.5
Q ss_pred eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC--
Q 010883 170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-- 247 (498)
Q Consensus 170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-- 247 (498)
....+|.+.|.+|...|.|.+|++|+.||+|+||.+.++.++....+.. .|.|++|+|.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-----------------~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-----------------EIRSVAWNPLSDLC 456 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-----------------eeEEEEecCCCCce
Confidence 4557899999999999999999999999999999999999988776543 799999999665
Q ss_pred EEEEEeCCCeEEEEECCCC-------------------------------------eeeEEEeccCCCeeEEEEeCCCCC
Q 010883 248 ELVAGSSDDCIYVYDLEAN-------------------------------------KLSLRILAHTSDVNTVCFGDESGH 290 (498)
Q Consensus 248 ~l~~g~~dg~i~vwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 290 (498)
.||++-.. .+.|.+..-| .-+.....|...|+.+.|+ ..|.
T Consensus 457 vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGD 534 (733)
T KOG0650|consen 457 VLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGD 534 (733)
T ss_pred eEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCc
Confidence 34444332 2444332111 0122334688899999998 8899
Q ss_pred EEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883 291 LIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 291 ~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
+|++...+ ..|.|+++. .......|....+.|.++.|+|...+|++++. ..|+|||+.....
T Consensus 535 YlatV~~~~~~~~VliHQLS----K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel---------- 599 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLS----KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL---------- 599 (733)
T ss_pred eEEEeccCCCcceEEEEecc----cccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH----------
Confidence 99988765 468899986 44445556556788999999999988888765 5799999976221
Q ss_pred ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEEeccC
Q 010883 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYH 446 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h 446 (498)
+..+... ....-+++++|.|.-|+.|+.|+.+..||+.-+ ++.+++..|
T Consensus 600 ------------------------vKkL~tg------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H 649 (733)
T KOG0650|consen 600 ------------------------VKKLLTG------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH 649 (733)
T ss_pred ------------------------HHHHhcC------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh
Confidence 1111111 122233466778999999999999999999765 567888899
Q ss_pred CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
...+++++|++..+++++|+.||++.|+.-
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999999999999999999999999998853
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-18 Score=165.59 Aligned_cols=295 Identities=15% Similarity=0.144 Sum_probs=205.1
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC--CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
..|.-.++|.++||+++++|+|..||.|.+|.--. +... .....+=|...|++++|+++|.+|++|+..+.+.+|.+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~-t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE-TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc-cceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 46777799999999999999999999999997443 2222 22233445568999999999999999999999999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-----------
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----------- 274 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~----------- 274 (498)
++++...+.++.. +|..+.++||+.+.+....|+.|.+....+......+.+
T Consensus 281 ~T~~kqfLPRLgs-----------------~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 281 ETGKKQFLPRLGS-----------------PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred cCCCcccccccCC-----------------eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 9998655555433 899999999999999999999999998766554443332
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-----------cccccEEEEEEcCCCCEEEEEeC
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----------GHLEGITFIDSRGDGRYLISNGK 343 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------~~~~~v~~l~~~~~~~~l~s~~~ 343 (498)
..+-.+.+++. |..+.++-.+..|.|.+||+. +...+..+. .+.-.++.++.+-.|.+++|.-.
T Consensus 344 ~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~----td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 344 PQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLY----TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred ccccceeEEEc-CCCCceeecCCCceEEEEecc----ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 23345677886 556677778889999999997 333333321 12335677777778888887642
Q ss_pred --------CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 344 --------DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 344 --------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
|| .+++|-.........+ .......|.... ...++....
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~kt~~L-----------------------------~T~I~~PH~~~~--vat~~~~~~ 467 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSKTFIL-----------------------------NTKINNPHGNAF--VATIFLNPT 467 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcceeEE-----------------------------EEEEecCCCcee--EEEEEecCc
Confidence 32 4677776543221110 111222333222 222222222
Q ss_pred CCCCcEEEEEecCCeEEEEECCCCc----------EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 414 STGQKYIYTGSHDSCVYVYDLVSGE----------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 414 s~~~~~l~~g~~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
+ ....++++.||.++||-+...+ +...-..|..++++++|+.||. +++++.|++|.+||..+.
T Consensus 468 r--s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 468 R--SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred c--cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 2 2278999999999999883321 2222224789999999999996 555667889999999883
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=4.1e-19 Score=154.98 Aligned_cols=206 Identities=18% Similarity=0.282 Sum_probs=162.4
Q ss_pred CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeE
Q 010883 230 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 301 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 301 (498)
..||+++|..++|+| +...||+|+.|.+|.||.+..+ +++..+.+|...|-.++|+|.-.+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 348999999999999 6678999999999999998765 34667889999999999998889999999999999
Q ss_pred EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
.+|++. ++..+..+. |.+.|.++.|+.||.+|++.+.|..|+|||.++.
T Consensus 157 ~iWnv~----tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-------------------------- 205 (472)
T KOG0303|consen 157 SIWNVG----TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-------------------------- 205 (472)
T ss_pred EEEecc----CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC--------------------------
Confidence 999998 777777777 9999999999999999999999999999999983
Q ss_pred ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe---cCCeEEEEECCCCcE---EEEeccCCCCeeeeEE
Q 010883 382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSW 455 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~ 455 (498)
..+..-.+|...... +..|-. +|.++.+|- .+..+-+||....+. ...+. .+..|.---|
T Consensus 206 --------~~v~e~~~heG~k~~-Raifl~----~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFy 271 (472)
T KOG0303|consen 206 --------TVVSEGVAHEGAKPA-RAIFLA----SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFY 271 (472)
T ss_pred --------cEeeecccccCCCcc-eeEEec----cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeee
Confidence 444444455443322 222222 677555553 367899999766443 34444 3445666678
Q ss_pred cCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883 456 HPSQPMLVSSS-WDGDVVRWEFPGNG 480 (498)
Q Consensus 456 sp~~~~l~s~~-~Dg~i~iw~~~~~~ 480 (498)
.+|..++..+| .|+.|+.|++....
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCC
Confidence 88988776665 69999999998765
No 177
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.9e-19 Score=148.78 Aligned_cols=224 Identities=20% Similarity=0.312 Sum_probs=157.6
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCCCeEEEEc
Q 010883 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWD 305 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~vwd 305 (498)
.+|..-|.++.|.+-|+.+|+|+.|++|.|||.... .+....+.|.+.|..+.|.+| -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 367778999999999999999999999999996543 355667899999999999754 489999999999999997
Q ss_pred Cccc--c---CCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883 306 RRCL--N---VKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 378 (498)
Q Consensus 306 ~~~~--~---~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
-... + .......++......|+.+.|.|. |-.+++++.||.++||+.........-.... .+..+..+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~-----Ei~~~~~p 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH-----EIQNVIDP 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh-----hhhhccCC
Confidence 5211 1 123455667778889999999984 6789999999999999986632211100000 00000000
Q ss_pred cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-----CeEEEEECCCC----cEEEEeccCCCC
Q 010883 379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVSG----EQVAALKYHTSP 449 (498)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~----~~~~~~~~h~~~ 449 (498)
|. .+. ....+..|++.. -...+||+|+.+ +.++||....+ ..+.++.+|..+
T Consensus 165 p~----------------~~~--~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 165 PG----------------KNK--QPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred cc----------------ccc--CcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 00 000 111112222211 134578888776 57889976553 346677799999
Q ss_pred eeeeEEcCCC----CeEEEEeCCCcEEEecCCCC
Q 010883 450 VRDCSWHPSQ----PMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 450 v~~l~~sp~~----~~l~s~~~Dg~i~iw~~~~~ 479 (498)
|++++|.|+- .+||+++.|| |+||++...
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA 258 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence 9999999963 3899999999 999999853
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.3e-18 Score=166.78 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=197.1
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 231 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (498)
+.+.||++............ ...|+++.|+| +..+|+.|..+|.|.+||+..+.......+. ....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~---~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls----------~~~~ 288 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES---PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS----------ALEV 288 (555)
T ss_pred ceEEEEecCCCCCceEEEec---CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc----------cccc
Confidence 47899999876333333322 33799999999 5567788889999999999877653211111 1223
Q ss_pred CceecEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeE-----EEe-------ccCCCeeEEEEeCCCCCEEEEeeC
Q 010883 232 GYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSD 297 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~--~l~~g~~dg~i~vwd~~~~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~l~s~s~ 297 (498)
.|+.++..+.|..+.. -+++++.||.|..|+++.-.... ... .....+++++|.+.+.+.|+.|+.
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence 6888999999987544 49999999999999876533211 011 122468999998888999999999
Q ss_pred CCeEEEEcCccccCCC----ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccce
Q 010883 298 DNLCKVWDRRCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373 (498)
Q Consensus 298 dg~i~vwd~~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 373 (498)
+|.|.--+........ +....+..|.++|+++.++|=+..++..+.|-+++||.-....
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~----------------- 431 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA----------------- 431 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-----------------
Confidence 9999884443222222 3455667789999999999977655555559999999977321
Q ss_pred eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--cEEEEeccCCCCee
Q 010883 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVR 451 (498)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~ 451 (498)
.++..+..+. ..+....|+|. ....++++..||.|.|||+... .++.....+....+
T Consensus 432 ----------------~Pl~~~~~~~--~~v~~vaWSpt---rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~ 490 (555)
T KOG1587|consen 432 ----------------SPLLSLDSSP--DYVTDVAWSPT---RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALT 490 (555)
T ss_pred ----------------Ccchhhhhcc--ceeeeeEEcCc---CceEEEEEcCCCceehhhhhccccCCcccccccccccc
Confidence 2233333333 12444455554 3467888888999999998654 45555555667778
Q ss_pred eeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 452 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 452 ~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
.+.|++.|+.|+.|...|.+++|++...-..+
T Consensus 491 ~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~ 522 (555)
T KOG1587|consen 491 RVRWSPNGKLLAVGDANGTTHILKLSESLAVP 522 (555)
T ss_pred eeecCCCCcEEEEecCCCcEEEEEcCchhhcc
Confidence 88999999999999999999999997554433
No 179
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=3e-19 Score=165.70 Aligned_cols=263 Identities=17% Similarity=0.228 Sum_probs=197.1
Q ss_pred CCccccccccccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEE
Q 010883 102 GRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~ 181 (498)
|..-+-+++....+-+.-.....+++.+|++.|+|++|+.||+++|+|+.|..|.+|+-.-. -.....|...|.|
T Consensus 24 GsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-----G~LkYSH~D~IQC 98 (1081)
T KOG1538|consen 24 GTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-----GILKYSHNDAIQC 98 (1081)
T ss_pred CceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-----ceeeeccCCeeeE
Confidence 33344455555555555555667899999999999999999999999999999999986532 1233467889999
Q ss_pred EEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883 182 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 261 (498)
Q Consensus 182 ~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw 261 (498)
+.|+|-...|++++-+ ..-+|..+......... ...|.+++|..||++|+.|-.+|+|.+-
T Consensus 99 MsFNP~~h~LasCsLs-dFglWS~~qK~V~K~ks------------------s~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 99 MSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKS------------------SSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred eecCchHHHhhhcchh-hccccChhhhhHHhhhh------------------heeEEEeeecCCCcEEEEeccCceEEee
Confidence 9999999999998764 47789876554332221 2278999999999999999999999998
Q ss_pred ECCCCeeeEEEe---ccCCCeeEEEEeCCC----CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883 262 DLEANKLSLRIL---AHTSDVNTVCFGDES----GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334 (498)
Q Consensus 262 d~~~~~~~~~~~---~~~~~v~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 334 (498)
+-. ++....+. +...+|.+++|+|.. ...+++.....++.+|.+ .++.+..-....-...|+.+-++
T Consensus 160 Nk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 160 NKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPCCISYFTN 233 (1081)
T ss_pred cCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCchhheeccC
Confidence 653 33333333 467899999998643 357888888888888888 45555544444455678999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
|.+++.|+.|+.+.+|.-.. -.+-+... .....|..+..
T Consensus 234 GEy~LiGGsdk~L~~fTR~G-----------------------------------vrLGTvg~------~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTRDG-----------------------------------VRLGTVGE------QDSWIWTVQAK 272 (1081)
T ss_pred CcEEEEccCCCceEEEeecC-----------------------------------eEEeeccc------cceeEEEEEEc
Confidence 99999999999999997543 11111111 22345666778
Q ss_pred CCCcEEEEEecCCeEEEEECC
Q 010883 415 TGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~ 435 (498)
|++++++.|+.||+|.-|++.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 899999999999999999864
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4.3e-19 Score=154.84 Aligned_cols=234 Identities=14% Similarity=0.206 Sum_probs=172.3
Q ss_pred CCeEEEEECC-CCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccC
Q 010883 152 ASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229 (498)
Q Consensus 152 dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
.|-..|--+. .|+.-.......+|+++|..++|+| +...||+||.|.+|.||.+..+-...... .+...
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------epvv~ 126 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------EPVVE 126 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------cceEE
Confidence 3344444433 2322333445578999999999999 66789999999999999997654432222 11122
Q ss_pred CCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc
Q 010883 230 DGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 308 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 308 (498)
..||...|--++|+|.. +.|++++.|..|.+||+.+++.+.++. |...|.++.|+ .+|.+|++.+.|..|+|||.+
T Consensus 127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr- 203 (472)
T KOG0303|consen 127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPR- 203 (472)
T ss_pred EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeeecccceeEEEcCC-
Confidence 34799999999999954 578899999999999999999988886 99999999998 899999999999999999999
Q ss_pred ccCCCceeEEecccccc-EEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883 309 LNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 384 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
.++.+..-.+|.+. -..+.|-.++..+.+|- .+.++-+||..+.+....
T Consensus 204 ---~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~------------------------ 256 (472)
T KOG0303|consen 204 ---RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA------------------------ 256 (472)
T ss_pred ---CCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcce------------------------
Confidence 88888888888763 34455777888554443 467899999887553311
Q ss_pred cCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCc
Q 010883 385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGE 438 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~ 438 (498)
...+.... ...-|.|.+|.++|+.++ .|+.|+-|.+....
T Consensus 257 -------~~elDtSn-------Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 257 -------LQELDTSN-------GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred -------eEEeccCC-------ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 12222221 123346777888887655 59999999987655
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=6.1e-20 Score=167.32 Aligned_cols=258 Identities=16% Similarity=0.223 Sum_probs=179.1
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
....|...|..++|.|....|++++.||.+.+|+++.........+ .+.....+|.++|.|+++.+++.+++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~--------epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV--------EPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce--------eeeEEEecccCceEEEEecCCceEEE
Confidence 4456677899999999999999999999999999943111111110 11122347999999999999999999
Q ss_pred EEeCCCeEEEEECCCC----------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec
Q 010883 251 AGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 320 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 320 (498)
+|+.||+|+.|++... .....+.+|.+.|+.++++ .....|++++.||++++|+.. ...+ .++.
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~----~~~~-~~f~ 434 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPT----EESP-CTFG 434 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeeccC----CcCc-cccC
Confidence 9999999999976532 1234577999999999998 667789999999999999985 2222 2332
Q ss_pred ccc--ccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883 321 GHL--EGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397 (498)
Q Consensus 321 ~~~--~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
... +...++.+.... .+.++ +...+.+++..+... +.+..+..
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~-------------------------------s~~~~~~s 480 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVV-------------------------------SDLLIFES 480 (577)
T ss_pred CccccCCcceEeeccchhHhhhh---hcccccccchhhhhh-------------------------------hheeeccc
Confidence 222 233445543222 12222 233333333332211 11111111
Q ss_pred Cc-----eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883 398 HS-----VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 472 (498)
Q Consensus 398 ~~-----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~ 472 (498)
.. ....+..... .|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.||.++
T Consensus 481 ~~~~~~~~~~~in~vVs----~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVVS----HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred cCCCcccccCccceEEe----cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceee
Confidence 10 0011222223 33678899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 010883 473 RWEFPGNG 480 (498)
Q Consensus 473 iw~~~~~~ 480 (498)
+|.+....
T Consensus 557 l~kld~k~ 564 (577)
T KOG0642|consen 557 LWKLDVKT 564 (577)
T ss_pred hhhccchh
Confidence 99986543
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=2.2e-18 Score=146.66 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=171.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC-C
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-G 206 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~-~ 206 (498)
+-...+|+|.+|++|++.+|.+.....|.||................|...|+.+.|+|..+.|++++.|..-++|.. .
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 344678999999999999999999999999999877656666677889999999999999999999999999999998 5
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee----EEEeccCCCeeEE
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTV 282 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~ 282 (498)
.++......+.. +....+++.|+|.++.||+|+....|.||-++...-- ..-..+.+.|+++
T Consensus 87 ~~~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl 152 (361)
T KOG1523|consen 87 GGTWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL 152 (361)
T ss_pred CCeeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee
Confidence 666555444433 4447999999999999999999999999987654321 1223577889999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccC--------------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 348 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~ 348 (498)
.|+ +++-+|++|+.|+.++++....... -+..+..+....+.+..+.|+|+|..|+-.+.|..+.
T Consensus 153 dWh-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 153 DWH-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred ecc-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 998 7888999999999999997531111 1112223334557899999999999999999999999
Q ss_pred EEeCCCCC
Q 010883 349 LWDIRKMS 356 (498)
Q Consensus 349 iwd~~~~~ 356 (498)
+-|.....
T Consensus 232 ~~da~~p~ 239 (361)
T KOG1523|consen 232 FVDAAGPS 239 (361)
T ss_pred EeecCCCc
Confidence 99987754
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.3e-16 Score=155.88 Aligned_cols=291 Identities=28% Similarity=0.450 Sum_probs=215.3
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCe
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPI 199 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~ 199 (498)
.....+..|...|.+++|+|++.++++++. |+.+++|++..+..+.. ...|...|.+++|+|++. .+++++.|+.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---eccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 445677899999999999999999998885 99999999987544433 234777999999999998 5555589999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEeccCCC
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 278 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~ 278 (498)
|++||...+..... . ..+|.... ...|++++..+++++.++.+++|++..... ...+..|...
T Consensus 223 i~~wd~~~~~~~~~-~--------------~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 223 IRLWDLSTGKLLRS-T--------------LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred EEEEECCCCcEEee-e--------------cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 99998775544331 0 01233343 338999998899999999999999987664 4444678899
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCC
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKM 355 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~ 355 (498)
+.++.|. +++..+++++.|+.+.+||.. ......... .|...+..+.+.+++..++.+ ..|+.+.+|++...
T Consensus 287 v~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 287 VLSVAFS-PDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEEEEC-CCCCEEEEeeCCCcEEEEEcC----CCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 9999998 567777779999999999886 444444443 677789999994332456555 67889999999873
Q ss_pred CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE-EEecCCeEEEEEC
Q 010883 356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDL 434 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iwd~ 434 (498)
. .......... . ....+++ ...++ .+..++.+.+|+.
T Consensus 362 ~----------------------------------~~~~~~~~~~---~----~~~~~~~-~~~~~~~~~~~~~~~~~~~ 399 (466)
T COG2319 362 K----------------------------------PLKTLEGHSN---V----LSVSFSP-DGRVVSSGSTDGTVRLWDL 399 (466)
T ss_pred c----------------------------------eeEEecCCce---E----EEEEECC-CCCEEEEecCCCceEEEec
Confidence 2 1111111111 1 1123333 22333 3788999999999
Q ss_pred CCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 435 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 435 ~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
...........+...+....+++++..+++++.++.+.+|+...
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99888777765447899999999999999999999999999987
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=4.4e-18 Score=163.04 Aligned_cols=278 Identities=16% Similarity=0.160 Sum_probs=192.9
Q ss_pred cccccccCCCCCccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEE---EEEeecCCCceeEEEEEeCCCC
Q 010883 113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQ 188 (498)
Q Consensus 113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~ 188 (498)
..++.+.....+...-.-..+|.|++|+|. .++||.|..+|.|.+||+..+... ........|..+++.+.|..+.
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 344455444556666677899999999995 578888999999999999876431 1223345788899999998755
Q ss_pred Ce--EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 010883 189 RH--LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA 265 (498)
Q Consensus 189 ~~--l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~ 265 (498)
.- +++++.||.|..|+++.-............. ...........+++++|.+ +-..+++|+..|.|.--+...
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhccccccc----ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 44 8999999999999876433211111111000 0001112233789999998 556799999999998743322
Q ss_pred Ce--------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-C
Q 010883 266 NK--------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-R 336 (498)
Q Consensus 266 ~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~ 336 (498)
.+ ....+..|.++|.++.++|-...+|++++ |.+|+||... ....++..+..+...+++++|||.. .
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---VIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc---CCCCcchhhhhccceeeeeEEcCcCce
Confidence 21 12345578899999999976666666666 9999999875 2456777777788889999999965 5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883 337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 416 (498)
Q Consensus 337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 416 (498)
.|+++..||.|.+||+......+ +....... .......++++
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~P--------------------------------v~s~~~~~------~~l~~~~~s~~ 497 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEP--------------------------------VLSQKVCS------PALTRVRWSPN 497 (555)
T ss_pred EEEEEcCCCceehhhhhccccCC--------------------------------cccccccc------cccceeecCCC
Confidence 67788889999999998744322 22222111 11122256668
Q ss_pred CcEEEEEecCCeEEEEECCC
Q 010883 417 QKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 417 ~~~l~~g~~dg~i~iwd~~~ 436 (498)
|+.|++|...|.+++|++..
T Consensus 498 g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999853
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=6.7e-18 Score=167.03 Aligned_cols=317 Identities=16% Similarity=0.197 Sum_probs=202.4
Q ss_pred cccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCC----eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeE
Q 010883 126 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 200 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i 200 (498)
.++.|...|..++.+++. .++++|+.||+|++|++..- ...............+.++.+.+.+..+|+++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 567899999999988765 99999999999999998641 2222233333345689999999999999999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCeeeEEEe--ccC
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHT 276 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~ 276 (498)
++.+++................. .+...-|..-+|.. .+. .|+.+...+.|..||+.......++. ...
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~-------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNL-------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EEEEccccccccceeeeeecccc-------cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 99998763211111100000000 00111233334443 233 68888888999999998766544443 345
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEEEcCC---CCEEEEEe--CCCcEEEE
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGD---GRYLISNG--KDQAIKLW 350 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~---~~~l~s~~--~dg~i~iw 350 (498)
+.|++++.. +.+++++.|+..|.+.+||+| -..++..+. ++..+|+.+..+|- ....++++ ..+.|.+|
T Consensus 1196 G~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1196 GLVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 789999996 788899999999999999999 666666654 34467777777653 34555444 46789999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
++.++.....+-......... + ..+.+. .-+.+. .....+. +...+.++++|+.|..|+
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls--~----------~~Ps~~---~~kp~~--~~~~~~~----~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILS--Y----------ALPSND---ARKPDS--LAGISCG----VCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred ecccCcceEEEEcCCCCcchh--h----------hccccc---CCCCCc--ccceeee----cccCCceeeecCCcccee
Confidence 999875443332110000000 0 000000 000000 1111111 222467889999999999
Q ss_pred EEECCCCcEE------------------------------------------------EEe--------ccCCCCeeeeE
Q 010883 431 VYDLVSGEQV------------------------------------------------AAL--------KYHTSPVRDCS 454 (498)
Q Consensus 431 iwd~~~~~~~------------------------------------------------~~~--------~~h~~~v~~l~ 454 (498)
.||....+.. ..+ ..|..+|++++
T Consensus 1330 ~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma 1409 (1431)
T KOG1240|consen 1330 KWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMA 1409 (1431)
T ss_pred eccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhh
Confidence 9996532111 000 13778899998
Q ss_pred EcCCCC-eEEEEeCCCcEEEec
Q 010883 455 WHPSQP-MLVSSSWDGDVVRWE 475 (498)
Q Consensus 455 ~sp~~~-~l~s~~~Dg~i~iw~ 475 (498)
+....+ +|++++.||.|+||.
T Consensus 1410 ~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1410 TLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhccCccEEEEecCCCeeeecC
Confidence 876554 899999999999994
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5e-18 Score=149.96 Aligned_cols=205 Identities=21% Similarity=0.246 Sum_probs=155.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE
Q 010883 238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317 (498)
Q Consensus 238 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 317 (498)
.+++|+.+|..|++|+.||.++||+..+...+.....|...|.++.|+ +++.+|++-+.| ..+||+.+ .+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~----~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN----TGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec----cCchhh
Confidence 789999999999999999999999999888888888999999999998 899999999999 99999998 555554
Q ss_pred Eecc--ccccEEEEEEcCCC---C--EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883 318 VLMG--HLEGITFIDSRGDG---R--YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 318 ~~~~--~~~~v~~l~~~~~~---~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
.... .......+.|+.|+ . .++....-+.|+.||+......... +
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l----------------------------~ 273 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL----------------------------R 273 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc----------------------------c
Confidence 4432 22345567777666 2 2333334566777776542211000 0
Q ss_pred eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
.......+ ....+++.|+||++++.|+.||.|-|++..+.+.++..+ .|...|+.+.|+||.+++++.+.|.
T Consensus 274 ~~~~~~~~-------~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 274 LRKKIKRF-------KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred hhhhhhcc-------CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 00000111 112344677899999999999999999999988877664 8999999999999999999999999
Q ss_pred cEEEecCCCCCCCC
Q 010883 470 DVVRWEFPGNGEAA 483 (498)
Q Consensus 470 ~i~iw~~~~~~~~~ 483 (498)
.+.+..+.......
T Consensus 347 ~~~v~~l~vd~~~~ 360 (398)
T KOG0771|consen 347 EAAVTKLAVDKTMQ 360 (398)
T ss_pred ceeEEEEeeccccc
Confidence 99999988755443
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=9.5e-19 Score=161.48 Aligned_cols=243 Identities=16% Similarity=0.193 Sum_probs=172.9
Q ss_pred eCCCCCeEEE--EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEE
Q 010883 184 LSPDQRHLVY--ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYV 260 (498)
Q Consensus 184 ~sp~~~~l~~--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~v 260 (498)
|..+...+++ ++..|.|.||++...-...--.+..... ...|+++.|.| |...|++++.||.|++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N------------gt~vtDl~WdPFD~~rLAVa~ddg~i~l 654 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN------------GTLVTDLHWDPFDDERLAVATDDGQINL 654 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc------------CceeeecccCCCChHHeeecccCceEEE
Confidence 3444555554 4557899999987543222222222221 12699999999 7788999999999999
Q ss_pred EECCCCe-------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 261 YDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 261 wd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
|.+..+. +...+..|...|+++.|+|--.+.|++++.|.+|++||++ ..+....+.+|.+.|..++|+|
T Consensus 655 Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~----~~~~~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 655 WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA----NAKLYSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh----hhhhhheeccCcCceeEEEECC
Confidence 9987653 3456778999999999998888999999999999999998 7788889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|+.+++.+.||+|++|+.++.... +..-.+... ....++.|..
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~p---------------------------------v~Eg~gpvg-tRgARi~wac-- 774 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQP---------------------------------VYEGKGPVG-TRGARILWAC-- 774 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCc---------------------------------cccCCCCcc-CcceeEEEEe--
Confidence 9999999999999999999885432 221111111 1112333443
Q ss_pred CCCCcEEEEEecC----CeEEEEECCCC--cEEEEeccC-CCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCC
Q 010883 414 STGQKYIYTGSHD----SCVYVYDLVSG--EQVAALKYH-TSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 414 s~~~~~l~~g~~d----g~i~iwd~~~~--~~~~~~~~h-~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~ 480 (498)
||+++++.+.| ..|.+||..+- ..+.+..-. .-.+.--.+.+|.. ++++|-.|..|.+|++-...
T Consensus 775 --dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 775 --DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred --cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 89998887765 46889987653 333332211 11112223455655 67788889999999986554
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=8.7e-19 Score=159.89 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=192.8
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-----CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
..+..|.+.|..++|.|-...|++++.||+|.+|++.. ...+.......+|.++|.|+++.+++..+.+|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 47789999999999999999999999999999999932 3456667788899999999999999999999999999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCC
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTS 277 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~ 277 (498)
|+.|++....- . ...++.. .-.....||++.|+.+++++....|++++.||++++|+.....+ ..+. ...+
T Consensus 368 I~~w~~p~n~d-p----~ds~dp~-vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 368 IRCWNLPPNQD-P----DDSYDPS-VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred eeeeccCCCCC-c----ccccCcc-hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 99998762211 0 0000000 01112348999999999999988999999999999999876655 2222 2224
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-------ccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
...++.+-.......++...-+.-.+++.. ....+..+.. -...+..+.++|...+.+++..|+.|+++
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e----v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDME----VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhh----hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 456666642222233333333333333332 2222222211 12346778899999999999999999999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
|..+. ..+.....|.. ...+.++.|+|-+|++++.|+.++
T Consensus 517 dn~~~----------------------------------~~l~s~~a~~~------svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 517 DNKTG----------------------------------KILHSMVAHKD------SVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred ccccc----------------------------------ccchheeeccc------eecceeecCCCceEEeecCCceee
Confidence 99874 33333333332 233447778999999999999999
Q ss_pred EEECCCCcEEEEeccCC
Q 010883 431 VYDLVSGEQVAALKYHT 447 (498)
Q Consensus 431 iwd~~~~~~~~~~~~h~ 447 (498)
+|.+....++.....|.
T Consensus 557 l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 557 LWKLDVKTCVLESTAHR 573 (577)
T ss_pred hhhccchheeecccccc
Confidence 99998888777766664
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=4.1e-16 Score=135.52 Aligned_cols=280 Identities=15% Similarity=0.252 Sum_probs=199.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC--eEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--~i~iwd~~~~ 208 (498)
...+..+.|+.|...|..|+.|| .++|+.+.-.+.. ........|.-+-|+ ..++|..+.+. .+++++.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999998 6788877643311 111222245555564 45566655543 5889988877
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCCeeEEEEe
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFG 285 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~ 285 (498)
..+.....+. +|.++.++.+ .|+++-.+ .|+|||+++.+.+.++.. +...+.++.++
T Consensus 79 ~~ICe~~fpt-----------------~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 79 TTICEIFFPT-----------------SILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred ceEEEEecCC-----------------ceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccC
Confidence 7665554433 7999999754 56666554 499999999999887753 44556666665
Q ss_pred CCCCCEEEEee--CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCCCccccc
Q 010883 286 DESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCN 362 (498)
Q Consensus 286 ~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~ 362 (498)
..+.+++.-+ ..|.|.+||+. +-+++..+..|.+.+.+++|+++|.+||+++..|+ |||+.+.+
T Consensus 139 -~~n~ylAyp~s~t~GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------- 205 (391)
T KOG2110|consen 139 -NANCYLAYPGSTTSGDVVLFDTI----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------- 205 (391)
T ss_pred -CCCceEEecCCCCCceEEEEEcc----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------
Confidence 4455666533 46899999998 78889999999999999999999999999999997 79999977
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE---
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--- 439 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--- 439 (498)
++.+..|+....... .++.+|+|++.+|++.+..++|+||.+.....
T Consensus 206 --------------------------G~kl~eFRRG~~~~~----IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~ 255 (391)
T KOG2110|consen 206 --------------------------GQKLYEFRRGTYPVS----IYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPP 255 (391)
T ss_pred --------------------------ccEeeeeeCCceeeE----EEEEEECCCCCeEEEecCCCeEEEEEecccccCCC
Confidence 566777765553333 45667888999999999999999998753210
Q ss_pred ----------------------------------EEEeccCCCCe-eeeEEc--CCCCeEEEEeCCCcEEEecCCCC
Q 010883 440 ----------------------------------VAALKYHTSPV-RDCSWH--PSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 440 ----------------------------------~~~~~~h~~~v-~~l~~s--p~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
....+...+.. ..+.+. +..+.+..++.||.++.|.++..
T Consensus 256 ~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 256 ESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00001011111 223333 46778999999999999999864
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=4.6e-18 Score=164.34 Aligned_cols=235 Identities=20% Similarity=0.220 Sum_probs=163.2
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCcccccc
Q 010883 152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA 228 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (498)
+..|.+||.+... ... ...+...+...+|+|||+.|++++.+ ..|++||+.+++...+....
T Consensus 183 ~~~i~i~d~dg~~-~~~---lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFI---VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceE---eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 222 23445579999999999999988754 37999999887643332211
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEe-CCCeE--EEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEE
Q 010883 229 DDGGYSFGIFSLKFSTDGRELVAGS-SDDCI--YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVW 304 (498)
Q Consensus 229 ~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i--~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vw 304 (498)
+ ....++|+|||+.|+.+. .+|.+ ++||+.+++. ..+..+...+....|+ ++++.|+.+ ..+|...||
T Consensus 248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence 1 233689999999888765 57754 5557766654 5566777778899998 677765544 467888898
Q ss_pred cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883 305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 384 (498)
Q Consensus 305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
++... +.....+ .+.. ....|+|||++|+..+.++ +.+||+.+...
T Consensus 320 ~~~~~---~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~--------------------------- 365 (429)
T PRK01742 320 RMSAS---GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST--------------------------- 365 (429)
T ss_pred EEECC---CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---------------------------
Confidence 87522 1222222 3333 4578999999998887765 66699876321
Q ss_pred cCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC--CCCcEEEEeccCCCCeeeeEEcCC
Q 010883 385 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL--VSGEQVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~sp~ 458 (498)
..+.... ...++.|+|||++|+.++.++.+.+|++ .+|+.+..+..|.+.+...+|+|-
T Consensus 366 --------~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 366 --------EVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------EEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1111110 0135678999999999999998888876 358888889888889999999985
No 191
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=142.33 Aligned_cols=255 Identities=16% Similarity=0.221 Sum_probs=177.6
Q ss_pred EEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccc---ccccccCccccccCCCCceecEEEEEEc-------CCCCE
Q 010883 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN---VTEIHDGLDFSAADDGGYSFGIFSLKFS-------TDGRE 248 (498)
Q Consensus 179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~~~~s-------~~g~~ 248 (498)
...+.|+|||..|++-+.|..+++|++...-...... ....+..+.. .....|...+|- |+..+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~------~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY------QEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe------ccCCEEEEEEeeeccccCCCccce
Confidence 4457899999999999999999999985422111100 0000000000 011256777765 56778
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEec--cCC---CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE----e
Q 010883 249 LVAGSSDDCIYVYDLEANKLSLRILA--HTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----L 319 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~ 319 (498)
+++.+.+.-|.+||.-+++....+.+ |.. ...+++|+ +++..|++|. ...|++||+...........+ -
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccc
Confidence 99999999999999999998766653 433 34689998 8898887764 679999999422211111111 1
Q ss_pred ccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883 320 MGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 398 (498)
Q Consensus 320 ~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
.+..+-|.+++|+|- ...++.++....+-||.-.. ..++..+.+|
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----------------------------------~~pl~llggh 249 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----------------------------------RRPLQLLGGH 249 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCC----------------------------------CCceeeeccc
Confidence 233667899999995 45899999988888887665 3566666677
Q ss_pred ceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCC-CcEEEEeccCCC-Cee--eeEEcCCCCeEEEEeCCCcEEE
Q 010883 399 SVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS-GEQVAALKYHTS-PVR--DCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~-~~~~~~~~~h~~-~v~--~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
....+.. .|.++|+.|++|.. |-.|..||++. +.++..+..|.+ .-. -....|++++|++|+.||.|++
T Consensus 250 ~gGvThL------~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v 323 (406)
T KOG2919|consen 250 GGGVTHL------QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV 323 (406)
T ss_pred CCCeeeE------EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE
Confidence 7444433 56669999999986 77899999976 556777777765 222 3455788999999999999999
Q ss_pred ecCCCCCC
Q 010883 474 WEFPGNGE 481 (498)
Q Consensus 474 w~~~~~~~ 481 (498)
||+.....
T Consensus 324 wdlk~~gn 331 (406)
T KOG2919|consen 324 WDLKDLGN 331 (406)
T ss_pred EecCCCCC
Confidence 99988544
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.3e-18 Score=149.24 Aligned_cols=263 Identities=12% Similarity=0.115 Sum_probs=184.8
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
.+|.+.|+++.|+.++++|++|+.|..+++|+++..-.....+.... ....|...|.|++|...++.+++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~---------~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV---------MEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee---------ccCccccceEEEEEccCCeeEecC
Confidence 47888999999999999999999999999999875322222111110 112466789999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccC---CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 253 SSDDCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
..+++|...|+++.+.+..+ .|. +.|..+..+ |..+.|++.+.++.|.+||.+.......++. +.........+
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~ 200 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTA 200 (609)
T ss_pred CCcceeEeeecccceeeeee-cccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceee
Confidence 99999999999998877665 444 589999998 4578999999999999999984432333332 22344567788
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 330 DSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 330 ~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
.|+|. ..+|++++..+-+.+||++......-. +.+......-..-.
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~---------------------------------~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQ---------------------------------RSMFKGLPQENTEW 247 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHh---------------------------------hhccccCcccchhh
Confidence 89995 467788888899999999985432211 11100000000011
Q ss_pred eccccCCCCcEEEEEecCCeEEEEECCCCcE-EEEeccCC-------CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~-------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
.+..|+|+|+.+++--....-.+||+.+.++ +..+. |. ..+.+++|.-|.. +++|+.+-.|++|.++...
T Consensus 248 M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred hheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCc
Confidence 2335677888888776666667888877443 33333 32 3567788876654 9999999999999998765
Q ss_pred CC
Q 010883 481 EA 482 (498)
Q Consensus 481 ~~ 482 (498)
+.
T Consensus 326 ds 327 (609)
T KOG4227|consen 326 DS 327 (609)
T ss_pred cc
Confidence 54
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=4.7e-18 Score=142.50 Aligned_cols=218 Identities=15% Similarity=0.215 Sum_probs=166.3
Q ss_pred CCCCCcccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEeCC--CCCeEEE
Q 010883 120 PVNGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSP--DQRHLVY 193 (498)
Q Consensus 120 ~~~~~~~l~-~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~sp--~~~~l~~ 193 (498)
+.+....|+ .+-+.|.|+.|.|++..||+-. |..|.+|+++.+..+..... ...++...++-+|+| +++.+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 333334444 5566999999999999999875 78899999998765322222 123455788899999 7787776
Q ss_pred EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eeeEE
Q 010883 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLR 271 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~-~~~~~ 271 (498)
.+ |++++.||+++......+. . .|...|..+.|+|+.+ +|++|+.||.|++||.+.- .++..
T Consensus 190 t~-d~tl~~~D~RT~~~~~sI~--d-------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 190 TS-DSTLQFWDLRTMKKNNSIE--D-------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred eC-CCcEEEEEccchhhhcchh--h-------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 54 7899999999765433222 1 4556899999999765 6788999999999999764 46778
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-------------------------CCCceeEEeccccccE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------------------VKGKPAGVLMGHLEGI 326 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~~~~~v 326 (498)
+.+|.-.|.++.|+|...+++++|+.|..|.+|...... .....+.++..|.+.|
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV 333 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence 889999999999999899999999999999999653211 1223455677899999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCC
Q 010883 327 TFIDSRG-DGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 327 ~~l~~~~-~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.+++|+. |.=.||+-+.||.+.|=.+..
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 9999987 445678899999998866543
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=142.24 Aligned_cols=331 Identities=18% Similarity=0.208 Sum_probs=203.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceeccc
Q 010883 136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~ 214 (498)
-++|||+|+++|+++.- .+.|-|..+-+..+. ... -..|..+.|..|..+++.+ ..++.|.+|++...+....+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql-f~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL-FLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH-HHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 36899999999999765 788888876422211 111 2268889999998877765 56889999999876543332
Q ss_pred cccccccCccccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE
Q 010883 215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 293 (498)
. + ...++.+++|+|||+.|+. ..-+-.|.+|.+.+.+... +.-.+..+..++|+ +++++.+
T Consensus 88 d--e--------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~-~dg~f~a 149 (447)
T KOG4497|consen 88 D--E--------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH-PDGQFCA 149 (447)
T ss_pred c--c--------------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC-CCCceee
Confidence 2 1 2237899999999976655 4557889999998876543 22233456788887 7888777
Q ss_pred EeeCC------------------------------------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883 294 SGSDD------------------------------------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 294 s~s~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
..+.- ..+.+||.- -.-.+..+ .-.-++..++|+|.+++
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~----Leykv~aY-e~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV----LEYKVYAY-ERGLGLKFVEWSPCNQF 224 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch----hhheeeee-eeccceeEEEeccccce
Confidence 66531 234444431 11111111 12256889999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCcccc---------------ccCcccccccceeecCCcCcccccCCC-----------Cce
Q 010883 338 LISNGKDQAIKLWDIRKMSSNASC---------------NLGFRSYEWDYRWMDYPPQARDLKHPC-----------DQS 391 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 391 (498)
|++|+.|+.+++.+--+-+.-..+ .............+.++|......... ...
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 999999999988654332211111 000111111222333333222111110 111
Q ss_pred EEEEccCceeEEEEEEEeccccCCCCcEEEEEec--CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 392 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
+..++............-..+||+|..++++-.. -+.+.+||+...+.-..+. ...+|....|+|..+.|+.+....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~s 383 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKS 383 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCc
Confidence 2222211111111112223468889999998765 4689999998877665554 456899999999999898888888
Q ss_pred cEEEecCCCCCCCCCccchhceeece
Q 010883 470 DVVRWEFPGNGEAAPPLNKKRIRRRQ 495 (498)
Q Consensus 470 ~i~iw~~~~~~~~~~~~~~~~~~~~~ 495 (498)
.+++|..........+.....+...+
T Consensus 384 rLY~W~psg~~~V~vP~~GF~i~~l~ 409 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVGVPKKGFNIQKLQ 409 (447)
T ss_pred eEEEEcCCCceEEecCCCCceeeeEE
Confidence 89999988765544444444444444
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2e-17 Score=135.40 Aligned_cols=253 Identities=15% Similarity=0.249 Sum_probs=170.8
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
.|..-+|+|.+++|++|..+|.|.+..+.+-........ + ....-...+|.++|+.++|. ..+|++|+ ||.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~-----g-k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPP-----G-KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGL 82 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCC-----C-CcceeeccccCCCeeeeeee--hhheeecc-Cce
Confidence 466778999999999999999999999865322111100 0 01111224789999999998 33566665 599
Q ss_pred EEEEECCCCee------eE--EEeccC-----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883 258 IYVYDLEANKL------SL--RILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 258 i~vwd~~~~~~------~~--~~~~~~-----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
|+-|..+.... +. ....|. ..|+++-.-|..+. ++.++.|+.++-||++ .++....+++|++
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE----~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLE----DGRIQREYRGHTD 157 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEec----CCEEEEEEcCCcc
Confidence 99987654221 11 111222 46788888644444 5555589999999998 9999999999999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883 325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 404 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
.|.++.-......+++|+.||++++||.++.+..... ..++.....+.-
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i-------------------------------e~yk~~~~lRp~ 206 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI-------------------------------EPYKNPNLLRPD 206 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEe-------------------------------ccccChhhcCcc
Confidence 9999998666667999999999999999985433221 111111111100
Q ss_pred EEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 405 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 405 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
-..|-.+...+..+|++|+. -.+.+|.+++.++...+. -..++..+.|. ...+++++..+.|.-|.+.+.-
T Consensus 207 -~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 207 -WGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVL 277 (325)
T ss_pred -cCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee--cceEEEeccccceeeeeeccEE
Confidence 00011122236678887764 459999999999888775 45678888994 4568888877788888876543
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=4e-16 Score=146.36 Aligned_cols=252 Identities=15% Similarity=0.157 Sum_probs=159.2
Q ss_pred CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~ 208 (498)
.+....++++||+++|++++ .++.|.+|+++....+..... .........++|+|++++|++++. ++.|.+|++.+.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34567889999999987765 478899999973212211111 112224678999999999988775 789999999642
Q ss_pred c-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEE-----Ee-ccCCCee
Q 010883 209 T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLR-----IL-AHTSDVN 280 (498)
Q Consensus 209 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~-----~~-~~~~~v~ 280 (498)
. ........ .+...+.+++++|+|+++++++ .++.|.+||+.+...+.. .. .......
T Consensus 113 g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 113 GIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred CCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 2 21111100 0111466788999999886655 568999999976432211 11 1234467
Q ss_pred EEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCCceeEEeccc------cccEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 010883 281 TVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK-DQAIKLWDI 352 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~ 352 (498)
.++|+ +++++++++.. ++.|.+|++.......+.+..+..+ ......+.++|++++++++.. ++.|.+|++
T Consensus 179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 89997 78888877776 8999999996211111223332211 112346889999999988854 688999998
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEE
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV 431 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~i 431 (498)
..... . ..+.++... ........++|||++|++++. +++|.+
T Consensus 258 ~~~~~---------------------------------~-~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 258 SEDGS---------------------------------V-LSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred eCCCC---------------------------------e-EEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEE
Confidence 65211 1 011111000 011223467889999998876 889999
Q ss_pred EECC
Q 010883 432 YDLV 435 (498)
Q Consensus 432 wd~~ 435 (498)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9874
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=5.8e-17 Score=142.28 Aligned_cols=273 Identities=15% Similarity=0.185 Sum_probs=186.6
Q ss_pred eeEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883 177 WTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 255 (498)
Q Consensus 177 ~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d 255 (498)
.+|..+.|.++.. .|++|+.|..|++|.+..+....--... ........|...|+++.|+|+|..|++|+.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V-------~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV-------EYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE-------EEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 3899999999776 9999999999999998765432210000 0112334688899999999999999999999
Q ss_pred CeEEEEECC--------C--------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe
Q 010883 256 DCIYVYDLE--------A--------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 319 (498)
Q Consensus 256 g~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 319 (498)
|.|.+|-.. + ......+.+|...|..++|+ ++++++++++.|..+++||+. .+.....+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~ 161 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAIL 161 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeec
Confidence 999999765 2 12334566899999999998 889999999999999999998 89999999
Q ss_pred ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc
Q 010883 320 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 399 (498)
Q Consensus 320 ~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (498)
..|...+..++|.|-++++++-+.|...+.+.+........... ..+ .........+...+.+..
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~---------~~m----~~~~~~~~e~~s~rLfhD-- 226 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL---------DIM----PAKAFNEREGKSTRLFHD-- 226 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee---------eEe----eecccCCCCcceeeeeec--
Confidence 99999999999999999999999998777777665322111100 000 000000001112222211
Q ss_pred eeEEEEEEEeccccCCCCcEEEEEec----CC-----eEEEEECCC-CcEEEEeccCCCCeeeeEEcC------------
Q 010883 400 VLRTLIRCHFSPVYSTGQKYIYTGSH----DS-----CVYVYDLVS-GEQVAALKYHTSPVRDCSWHP------------ 457 (498)
Q Consensus 400 ~~~~~~~~~~~~~~s~~~~~l~~g~~----dg-----~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp------------ 457 (498)
.+...+.+.++|+|||.+|++... .+ ..++|+-.. .++...+..-..++..+.|+|
T Consensus 227 --eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~ 304 (434)
T KOG1009|consen 227 --ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEK 304 (434)
T ss_pred --CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccc
Confidence 122334456678899999987542 22 345665432 244555655556666666655
Q ss_pred ------CCCeEEEEeCCCcEEEecCCCC
Q 010883 458 ------SQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 458 ------~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+-.+|.++ ...|+|||....
T Consensus 305 ~~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 305 FLFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred cccccccceEEEEee-cceEEEeccccc
Confidence 222345554 457999997653
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=8.1e-19 Score=166.76 Aligned_cols=244 Identities=20% Similarity=0.275 Sum_probs=189.7
Q ss_pred cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~ 251 (498)
..+|...|.|+.|...|.++++|+.|..++||..+++.+..... ||.+.|+.++.+.++.++++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r----------------Ghs~ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR----------------GHSGDITDLAVSSNNTMIAA 249 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC----------------CCccccchhccchhhhhhhh
Confidence 34788899999999999999999999999999998887654433 78999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFID 330 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~ 330 (498)
++.|..|++|-+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-.. .......+. ....-+.++.
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccc-cccCCCCCCcccccceeeee
Confidence 999999999999999999999999999999999843 278899999999987110 000000011 1224566777
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 331 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
|-.++.-+++++.|+.-..|.+........ ...|.
T Consensus 324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~---------------------------------------------~lif~ 358 (1113)
T KOG0644|consen 324 FENNGDRFLTGSRDGEARNHEFEQLAWRSN---------------------------------------------LLIFV 358 (1113)
T ss_pred ccccccccccccCCcccccchhhHhhhhcc---------------------------------------------ceEEE
Confidence 878888899999999988887754211000 00000
Q ss_pred cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCCC
Q 010883 411 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
..-+.-..+.+++-.+-.+.+|++.+|.+++.+.+|...+..+.++|-.+ ...+++.||...|||+..+...
T Consensus 359 t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 359 TRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred eccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 00011124666777788899999999999999999999999999999877 5568899999999999877544
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.4e-16 Score=143.33 Aligned_cols=293 Identities=18% Similarity=0.248 Sum_probs=201.0
Q ss_pred CCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 129 QTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
.|...-+.+..+|||+|+. +|..--.|++||+.+-..-.. .+-....|.-.-++.|-..++.-..|.+|.+-.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE---RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE---RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee---ecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 4677788999999999755 566778999999986421111 11112234444455555556666667777654322
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
|.. ....++. .-.+++++.-..-|++++....|+-++++.|..+..+....+.++++..+ +
T Consensus 125 G~h-y~~RIP~-----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~ 185 (703)
T KOG2321|consen 125 GRH-YRTRIPK-----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-E 185 (703)
T ss_pred Cee-eeeecCc-----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-C
Confidence 211 1111111 23456666544446666666789999999999988888788999999998 6
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCce--eEEeccccc-----cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVLMGHLE-----GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 360 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~-----~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 360 (498)
...+|++|+.+|.|..||.++....+.. ......|.+ .|+++.|+.+|-.+++|..+|.+.|||++....
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--- 262 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--- 262 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---
Confidence 7789999999999999999833211111 111222333 399999999999999999999999999998432
Q ss_pred cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 440 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 440 (498)
.....|.....+....|... .+++.|++. ....++|||-.+|+..
T Consensus 263 --------------------------------l~~kdh~~e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 263 --------------------------------LLVKDHGYELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECTGKPM 307 (703)
T ss_pred --------------------------------eeecccCCccceeeeccccc--CCCceEEec-chHHhhhcccccCCce
Confidence 22233443344555555544 234445444 4567999999999999
Q ss_pred EEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 441 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
..+.. ...++++++-|++-+++++-.++.+..|=++.-+.++
T Consensus 308 asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 308 ASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred eeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 88874 4459999999999999999999999888887665543
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=5.4e-17 Score=147.27 Aligned_cols=265 Identities=14% Similarity=0.193 Sum_probs=178.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-------CCCeEEEEECCCeEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-------DQRHLVYASMSPIVH 201 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~s~d~~i~ 201 (498)
.|...|.|+.|+.+...+.++.++-.+.-|++.+. .......+... -.+.+-.-| ....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceEE
Confidence 45666789999988887777755544444555443 22111111111 011111111 224788889999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
|.+-. ++...... .|.+.+.+-.|+|||.-|++++.||.|++|.- +|-+..++.....+|.|
T Consensus 89 il~k~-~rVE~sv~----------------AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 89 ILNKS-ARVERSIS----------------AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred Eeccc-chhhhhhh----------------hhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEE
Confidence 88743 33222211 47779999999999999999999999999984 45444455567789999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
++|.|..++.+++.+ +.+.+=.+. ....+..+..|.+-|.++.|++..+.+++|+.|-..++||-..
T Consensus 151 ~~W~p~S~~vl~c~g--~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G------- 217 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG--GHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG------- 217 (737)
T ss_pred EEECCCCCceEEecC--CeEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-------
Confidence 999866666766655 455555554 4556667889999999999999999999999999999999754
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
+.+..-..|.. .+. +.+|.|+ +.++.++.+ +++
T Consensus 218 ----------------------------~~Lf~S~~~ey--~IT----Sva~npd-~~~~v~S~n-t~R----------- 250 (737)
T KOG1524|consen 218 ----------------------------ANLFTSAAEEY--AIT----SVAFNPE-KDYLLWSYN-TAR----------- 250 (737)
T ss_pred ----------------------------cccccCChhcc--cee----eeeeccc-cceeeeeee-eee-----------
Confidence 33333333332 222 3356667 556666543 232
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
--+...+.|..++||+||..++.|...|.+.+=
T Consensus 251 ~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 251 FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 112356789999999999999999999987653
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=7.3e-15 Score=127.87 Aligned_cols=285 Identities=16% Similarity=0.185 Sum_probs=185.6
Q ss_pred CceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 132 SRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
..|--+-||. .++|..+.+ +.+++++...+..+....... +|.++.++. +.|++.-.+ .|.|||+.+.+
T Consensus 47 ~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk 117 (391)
T KOG2110|consen 47 VSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMNR--KRLVVCLEE-SIYIYDIKDMK 117 (391)
T ss_pred eEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEcc--ceEEEEEcc-cEEEEecccce
Confidence 3455555654 456655543 459999998886666654333 699999854 455655544 49999999988
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
....+..... +...+.++.+++.+.+|+.-+ ..|.|.+||+.+-+.+..+..|.+.+.+++|+ +
T Consensus 118 lLhTI~t~~~-------------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~ 183 (391)
T KOG2110|consen 118 LLHTIETTPP-------------NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-P 183 (391)
T ss_pred eehhhhccCC-------------CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-C
Confidence 7666554322 222577777777888888744 36899999999999999999999999999998 8
Q ss_pred CCCEEEEeeCCCe-EEEEcCccccCCCceeEEecccc--ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 288 SGHLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGHL--EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 288 ~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
+|.+||++|..|+ |||+.+. .+..+..+..-. ..|.+++|+|++++|++.+..++|.+|.+............
T Consensus 184 ~G~llATASeKGTVIRVf~v~----~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~ 259 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVP----EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPT 259 (391)
T ss_pred CCCEEEEeccCceEEEEEEcC----CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCC
Confidence 9999999999997 6899997 788887776433 35889999999999999999999999999875522221100
Q ss_pred ccc---ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC--CcE
Q 010883 365 FRS---YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--GEQ 439 (498)
Q Consensus 365 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~ 439 (498)
... ..+......+-|....-.....+.....+......... +.+.. .+...++.+++.||.++.|.+.. |..
T Consensus 260 ~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~-~~l~~--~~~~~~v~vas~dG~~y~y~l~~~~gGe 336 (391)
T KOG2110|consen 260 AGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNI-CSLSS--IQKIPRVLVASYDGHLYSYRLPPKEGGE 336 (391)
T ss_pred CCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccce-EEeec--cCCCCEEEEEEcCCeEEEEEcCCCCCce
Confidence 000 00000111111111111112222333322222111111 11111 12567899999999999998754 444
Q ss_pred EEEeccC
Q 010883 440 VAALKYH 446 (498)
Q Consensus 440 ~~~~~~h 446 (498)
...++.|
T Consensus 337 c~lik~h 343 (391)
T KOG2110|consen 337 CALIKRH 343 (391)
T ss_pred eEEEEee
Confidence 4444434
No 202
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-16 Score=135.34 Aligned_cols=308 Identities=17% Similarity=0.272 Sum_probs=198.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEeecCCC------------ceeEEEEEeCCCCC--eEEEE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--IQKDILAKSL------------RWTVTDTSLSPDQR--HLVYA 194 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~--~~~~~~~~~~------------~~~v~~~~~sp~~~--~l~~~ 194 (498)
..-|.++.|..+|.+||+|..+|.|.+|.-+.... ..-....+.| ...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45689999999999999999999999997543221 1111111122 24789999998764 66677
Q ss_pred ECCCeEEEEECCCCceec-cccccc-----------------cccCcccc--ccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 195 SMSPIVHIVDVGSGTMES-LANVTE-----------------IHDGLDFS--AADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~-~~~~~~-----------------~~~~~~~~--~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
+.|.+|++|.+....... -...+. ....+... ..-..+|+..|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999986543322 000000 00000000 011247999999999999999888874
Q ss_pred CCeEEEEECCCCeeeEEE---ecc-----CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee----------
Q 010883 255 DDCIYVYDLEANKLSLRI---LAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA---------- 316 (498)
Q Consensus 255 dg~i~vwd~~~~~~~~~~---~~~-----~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---------- 316 (498)
|=.|.+|+++--.....+ ..+ ..-|++..|+|...++|+-.+..|+|++-|+|....-....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 667999998754332222 222 24588899998889999999999999999998321111111
Q ss_pred --EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883 317 --GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 394 (498)
Q Consensus 317 --~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
.-+..--..|..+.|+++|+++++-.. -+|++||+.... +++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~---------------------------------~pv~t 309 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA---------------------------------KPVET 309 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---------------------------------CcceE
Confidence 111222345788999999999997654 579999996532 44444
Q ss_pred EccCceeEE---------EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE-EEe-------------------c-
Q 010883 395 YKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AAL-------------------K- 444 (498)
Q Consensus 395 ~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~-------------------~- 444 (498)
+..|..... .+--.|..+|+.++.++++|+..+.+++|++..|... .++ .
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 444432111 1112234456778899999999999999996654221 000 0
Q ss_pred cC-------------CCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 445 YH-------------TSPVRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 445 ~h-------------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
+. ...|...+|+|..+.+|.+..++ ++|+
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 00 12356678999999888887653 5554
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-17 Score=146.56 Aligned_cols=197 Identities=17% Similarity=0.190 Sum_probs=148.7
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~ 214 (498)
.+++|+++|..|++|+.||++|||+..+. ........|...|.++.|+|||+.|++.+.| ..+||++.++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 89999999999999999999999997764 2333445677799999999999999999999 8999999998543333
Q ss_pred cccccccCccccccCCCCceecEEEEEEcCCC---CE--EEEEeCCCeEEEEECCCCee-----eEEEeccCCCeeEEEE
Q 010883 215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---RE--LVAGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF 284 (498)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g---~~--l~~g~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~ 284 (498)
.... .......+.|+.|+ .+ ++.....+.|..|++...+. ..+...-...|++++.
T Consensus 224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 2111 11246678888877 33 33333456677776654322 1112233457999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+ .++++++.|+.||.|-|++.. .-+.+ ..-..|...|+.+.|+||.+++++.+.|....+..+..
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 8 899999999999999999986 33333 34457999999999999999999999999988887764
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=4.7e-17 Score=147.64 Aligned_cols=208 Identities=15% Similarity=0.173 Sum_probs=160.3
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCc
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 223 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (498)
..|+.++.||.+.|.+-... +.+ ....|.+.|.+-.|+|||.-|++++.||.|++|.-...-...+.+.
T Consensus 76 d~~~i~s~DGkf~il~k~~r--VE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~------- 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--VER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN------- 144 (737)
T ss_pred ceEEEEcCCceEEEecccch--hhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-------
Confidence 46888889999988875432 232 3357888999999999999999999999999998654221111111
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEE
Q 010883 224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 303 (498)
Q Consensus 224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~v 303 (498)
..+|.|++|.|+...++.+- .+.+.|=.+.....+.+.+.|.+-|.++.|+ +..+++++|+.|-..++
T Consensus 145 ----------~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 145 ----------EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI 212 (737)
T ss_pred ----------CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence 12799999999888776654 4578888888877788899999999999998 77899999999999999
Q ss_pred EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccc
Q 010883 304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 383 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
||. .+.++..-..|.-+|++++|+|+ ..++.++.+ ++++=..+.
T Consensus 213 WD~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~----------------------------- 256 (737)
T KOG1524|consen 213 WDA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPRV----------------------------- 256 (737)
T ss_pred ecc-----cCcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCCc-----------------------------
Confidence 997 68888888889999999999999 666666543 344211111
Q ss_pred ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883 384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 432 (498)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 432 (498)
...|..+||+||..+++|+..|.+.+=
T Consensus 257 ----------------------GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 257 ----------------------GSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ----------------------cceEEEEEcCCCceeeccccCceEEEe
Confidence 234566788899999999998876553
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.4e-15 Score=146.67 Aligned_cols=235 Identities=17% Similarity=0.209 Sum_probs=158.4
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECCCCceeccccccccccCccccccC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
..|.+||.+.... ... . .+...+...+|+|||+.|+..+. +..|.+|++.+++...+.....
T Consensus 179 ~~l~~~d~dg~~~-~~l-t--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------- 243 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVV-H--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------- 243 (429)
T ss_pred eeEEEEcCCCCCC-EEe-e--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----------
Confidence 3689999876532 222 1 23447899999999999987653 4579999998876544332211
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CCeEEEE-
Q 010883 230 DGGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVW- 304 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~~g~~l~~g-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~vw- 304 (498)
.+..++|+|||+.|+.. +.+| .|++||+.+++.. .+..+...+....|+ |+++.|+..+. ++...+|
T Consensus 244 ------~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 244 ------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred ------CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEE
Confidence 24467999999988865 3344 5999999887653 444555677889998 77877766654 4555555
Q ss_pred -cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883 305 -DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 380 (498)
Q Consensus 305 -d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
|+. .+ ....+..+........|+|||++|+..+.+ ..|.+||+.+..
T Consensus 316 ~d~~----~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------------------------ 366 (429)
T PRK03629 316 VNIN----GG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------------------------ 366 (429)
T ss_pred EECC----CC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC------------------------
Confidence 553 22 233333344455678899999999876643 358888887632
Q ss_pred cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe---EEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883 381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC---VYVYDLVSGEQVAALKYHTSPVRDCSWHP 457 (498)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 457 (498)
...+.... ....|.|+|||++|+.++.++. ++++++ +|.....+..|.+.+...+|+|
T Consensus 367 -----------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 367 -----------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -----------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 11111110 1135688999999999988764 677787 5666677878888999999997
Q ss_pred C
Q 010883 458 S 458 (498)
Q Consensus 458 ~ 458 (498)
-
T Consensus 428 ~ 428 (429)
T PRK03629 428 Y 428 (429)
T ss_pred C
Confidence 3
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.9e-15 Score=143.40 Aligned_cols=309 Identities=15% Similarity=0.116 Sum_probs=207.6
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
+.+|.. =.++.+++.|.+.+..-.+ .+.+|+..++. ..........|...+++.+++|.++++|+|..||.|.+|.-
T Consensus 157 ~~~~~~-~~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 157 LKEHQE-PKSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred hhhhcC-CccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 334433 4678899999887777544 68899987743 12222233467777899999999999999999999999985
Q ss_pred CCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 206 GSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
-.. ......... .=|..+|.+++|+++|.+|++|+..+.+.+|.+++++ ..-++.-.++|..+.+
T Consensus 235 ~~~~~~~~t~t~l-------------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 235 FGSSDDSETCTLL-------------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVV 300 (792)
T ss_pred cccccccccceEE-------------EecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEE
Confidence 431 111111111 1255589999999999999999999999999999998 4556677889999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--------eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
+ +++.+.+....|+.|.+......... ..+.. -....+-.+.++++|..+.++-.+..|.|.+||+-+..
T Consensus 301 S-~ds~~~sl~~~DNqI~li~~~dl~~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 301 S-PDSDLYSLVLEDNQIHLIKASDLEIK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred c-CCCCeEEEEecCceEEEEeccchhhh-hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 8 88888888899999999876422111 01111 11123446788899988889999999999999998754
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--------C--
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------D-- 426 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------d-- 426 (498)
..... .+.....+.............+.+..|.++++.-. |
T Consensus 379 ~i~~~-----------------------------~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 379 TIYKL-----------------------------QVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred eeeeE-----------------------------EEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 33221 01111111111122222333345557888888632 3
Q ss_pred CeEEEEECCCCcEEE----Ee-ccCCCCeeeeEEcCC-CC-eEEEEeCCCcEEEecCCCCCCC
Q 010883 427 SCVYVYDLVSGEQVA----AL-KYHTSPVRDCSWHPS-QP-MLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 427 g~i~iwd~~~~~~~~----~~-~~h~~~v~~l~~sp~-~~-~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
-.+++|-......-. .+ ..|...+...++.+. .. ..++++.||.++||-+.+....
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 357888765543322 22 368776666665543 33 7999999999999999666544
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=4.2e-16 Score=141.66 Aligned_cols=278 Identities=17% Similarity=0.198 Sum_probs=180.7
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC-CceeEEEEEe-----CCCCCeEEEEECCCeEEEEECC
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSL-----SPDQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~~~~-----sp~~~~l~~~s~d~~i~iwd~~ 206 (498)
.+....++-.|.+|+..- ...+.+|+...+..+...+.... .....+|-+| .|.+--|+++-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455566666777877663 34688998875422222111110 0112333334 4567778888888999998876
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 285 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 285 (498)
..+...++...... ....|+|+.|-|. ...++++-.+|.+++||.+ +....+...|.
T Consensus 204 ~~~~sklfne~r~i------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~ 261 (636)
T KOG2394|consen 204 NFEVSKLFNEERLI------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQ 261 (636)
T ss_pred hhHHHHhhhhcccc------------cccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCccc
Confidence 64333323222111 1237999999994 4467777889999999972 11112222221
Q ss_pred -CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 286 -DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 286 -~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
.+++..+.... |--. ....++..+.--.+.|+.++|+|||++||+.+.||.++|||+.++.....
T Consensus 262 ~~k~~~~f~i~t-------~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---- 327 (636)
T KOG2394|consen 262 ALKDGDQFAILT-------SKSK---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---- 327 (636)
T ss_pred ccCCCCeeEEee-------eecc---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH----
Confidence 13444443322 1111 02245555555567899999999999999999999999999987432211
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 444 (498)
+ ++....+. +.+|||||+||++|++|--|.||.+..++.++.-+
T Consensus 328 ------------------------------m--kSYFGGLL----CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 328 ------------------------------M--KSYFGGLL----CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred ------------------------------H--HhhccceE----EEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 1 11112233 33677799999999999999999999999999999
Q ss_pred cCCCCeeeeEEcCC-----------------------------------C-------------CeEEEEeCCCcEEEecC
Q 010883 445 YHTSPVRDCSWHPS-----------------------------------Q-------------PMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 445 ~h~~~v~~l~~sp~-----------------------------------~-------------~~l~s~~~Dg~i~iw~~ 476 (498)
+|.+.|..++|.|- + -.|.+.+.|-.+.+||+
T Consensus 372 GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDl 451 (636)
T KOG2394|consen 372 GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDL 451 (636)
T ss_pred ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEec
Confidence 99999999999830 1 14678889999999999
Q ss_pred CCCCCCC
Q 010883 477 PGNGEAA 483 (498)
Q Consensus 477 ~~~~~~~ 483 (498)
......+
T Consensus 452 teD~L~~ 458 (636)
T KOG2394|consen 452 TEDVLVP 458 (636)
T ss_pred chhhccc
Confidence 8765444
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.1e-17 Score=149.25 Aligned_cols=247 Identities=18% Similarity=0.207 Sum_probs=166.4
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 248 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~ 248 (498)
...+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+...... .||...|.++.|-| +.+.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------TGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------cccccceeEEeeeccCCCeE
Confidence 456899999999999999999999999999999987655443332 27888999999999 5678
Q ss_pred EEEEeCCCeEEEEECCCC----------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC---C--
Q 010883 249 LVAGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---G-- 313 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~-- 313 (498)
+++|..|..|+++|+... .....+..|...|..++-.|...+.+.+++.||+|+-+|++....- .
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 999999999999999852 2344556799999999998666799999999999999999843210 0
Q ss_pred -ceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCcccc-ccCcccccccceeecCCcCcccccCCCCc
Q 010883 314 -KPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASC-NLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 314 -~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
..+..+....-...++..+|. ..+|++|+.|-..++||.+........ .........+.+++.+ .. ..
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-------f~--p~ 260 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-------FS--PG 260 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe-------ec--Cc
Confidence 011111222234678889985 568899999999999997653221111 0000000001000000 00 00
Q ss_pred eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
.+....+ .......+....+|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 261 hlkn~~g--n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HLKNSQG--NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccCccc--ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0111111 11223344555688999988888777778999999887765444
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=1.2e-17 Score=148.97 Aligned_cols=272 Identities=19% Similarity=0.256 Sum_probs=206.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
...-+.+.++.+|+.|+.|+.-|.|-.+|..++.....+. ....|.++.|-.+.+++|++- ...+.|||-..-+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEE
Confidence 4456789999999999999999999999999885554433 334799999999999888764 57899999776555
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 290 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (498)
..+.... .|..+.|.|..-+|++++..|.+..-|+.+|+.+..+..-.+.+..++-+ |-+.
T Consensus 204 HClk~~~------------------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~Na 264 (545)
T KOG1272|consen 204 HCLKRHI------------------RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNA 264 (545)
T ss_pred eehhhcC------------------chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccc
Confidence 4444322 68889999998889999999999999999999999998888899999998 6677
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
.+-+|...|+|.+|... ...++..+..|.++|.+|++.++|+|++|.+.|..++|||++.....
T Consensus 265 Vih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql------------ 328 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL------------ 328 (545)
T ss_pred eEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc------------
Confidence 89999999999999997 78888899999999999999999999999999999999999985421
Q ss_pred cceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE-CCCC--cEEEEeccC
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD-LVSG--EQVAALKYH 446 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd-~~~~--~~~~~~~~h 446 (498)
.++.. +.. ...++| .+-+++.+....|.||. .-.+ ..-..+-.|
T Consensus 329 ----------------------~t~~tp~~a--------~~ls~S--qkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H 376 (545)
T KOG1272|consen 329 ----------------------HTYRTPHPA--------SNLSLS--QKGLLALSYGDHVQIWKDALKGSGHGETPYMNH 376 (545)
T ss_pred ----------------------ceeecCCCc--------cccccc--cccceeeecCCeeeeehhhhcCCCCCCcchhhh
Confidence 11111 110 111333 23344445556799995 2221 111112123
Q ss_pred --CCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 447 --TSPVRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 447 --~~~v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
.++|.++.|+|-...|-.|-.-|.-.|.
T Consensus 377 ~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 377 RCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ccCcccccceeccHHHeeeccccCCceeEe
Confidence 4689999999988777777665544443
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.9e-16 Score=134.98 Aligned_cols=246 Identities=15% Similarity=0.140 Sum_probs=173.2
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
.+|+|.+|++|...+|++.....|.||.....+.-..... ...|...|+.+.|+|..+.|++++.|.
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~ht-------------ls~Hd~~vtgvdWap~snrIvtcs~dr 77 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHT-------------LSEHDKIVTGVDWAPKSNRIVTCSHDR 77 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceecee-------------hhhhCcceeEEeecCCCCceeEccCCC
Confidence 4899999999999999999999999999887763222211 124667899999999999999999999
Q ss_pred eEEEEEC-CCC--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 257 CIYVYDL-EAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 257 ~i~vwd~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
.-+||.. ..+ ++...+..+....+++.|+ |.++.|++|+....|.||-.+..+.-......-..+...|++++|+|
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred CccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 9999998 333 4556677899999999998 78899999999999999988633222222233445678899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
++-+|++|+.|+.++++..--..... ......|+ -..+.++.+..+.... .......|
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vde----kpap~pWg------------sk~PFG~lm~E~~~~g------gwvh~v~f 214 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDE----KPAPTPWG------------SKMPFGQLMSEASSSG------GWVHGVLF 214 (361)
T ss_pred CcceecccccCcceeEEEEeeecccc----CCCCCCCc------------cCCcHHHHHHhhccCC------CceeeeEe
Confidence 99999999999999998642110000 00001111 0111123333332111 12233467
Q ss_pred CCCCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCC
Q 010883 414 STGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 414 s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~ 458 (498)
+|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 7899999999999999999987664 34444333367777777543
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.73 E-value=2.5e-14 Score=133.83 Aligned_cols=309 Identities=16% Similarity=0.131 Sum_probs=185.2
Q ss_pred CEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883 144 SLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 144 ~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
++++ +-..++.|.|.|..+.+.+........ .-..+.|+|||+++.+++.||.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 4554 455689999999999877766543322 23457799999999999999999999999998766654332
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEecc-------CCCeeEEEEeCCCCCEEEE
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGHLIYS 294 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s 294 (498)
...++++++||++++++. ..+.+.++|.++.+.+..+... ...+..+..+|....++++
T Consensus 79 -------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 79 -------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 577899999999998776 5889999999999998887632 3456778777444445555
Q ss_pred eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCccccc----
Q 010883 295 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYE---- 369 (498)
Q Consensus 295 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 369 (498)
--..+.|.+.|.... ..................|+|++++++++ ..+..|-++|..+.........+.....
T Consensus 146 lkd~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp ETTTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred EccCCeEEEEEeccc---cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccc
Confidence 556688888887622 12222233334567788999999987664 4566899999887655443322221111
Q ss_pred ----------ccceeec------CCcCccc-ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE----ecCCe
Q 010883 370 ----------WDYRWMD------YPPQARD-LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG----SHDSC 428 (498)
Q Consensus 370 ----------~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----~~dg~ 428 (498)
|...... ...+... ......+.+..+...... .....+|+++++.+. ...++
T Consensus 223 ~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-------lFi~thP~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 223 NFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-------LFIKTHPDSRYVWVDTFLNPDADT 295 (369)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---------EE--TT-SEEEEE-TT-SSHT-
T ss_pred cccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-------ceeecCCCCccEEeeccCCCCCce
Confidence 1111000 0000000 111223344444433211 111347799999998 44589
Q ss_pred EEEEECCCCcEEEEeccC-CCCeeeeEEcCCCCeEEEEeCCC--cEEEecCCCCCCC
Q 010883 429 VYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEA 482 (498)
Q Consensus 429 i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~~~Dg--~i~iw~~~~~~~~ 482 (498)
|.++|..+.+.+..+... ...+..+.|+++|+.+..+.+++ .|.+||..+.++.
T Consensus 296 v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 296 VQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 999999999888887632 23589999999999666555443 6999998876543
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.7e-15 Score=145.08 Aligned_cols=214 Identities=17% Similarity=0.141 Sum_probs=145.7
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEe
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~ 273 (498)
+..|.+||........+. .|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +.
T Consensus 183 ~~~i~i~d~dg~~~~~lt-----------------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~ 244 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVN-----------------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA 244 (429)
T ss_pred eEEEEEECCCCCCceEec-----------------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee
Confidence 368999998765432221 233468999999999999987653 469999998876422 22
Q ss_pred ccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 010883 274 AHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWD 351 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd 351 (498)
...+....++|+ |+++.|+.+ +.+|.+.||.+.. .......+..+...+....|+|||+.|+..+ .++...||+
T Consensus 245 ~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 245 SFRGHNGAPAFS-PDGSRLAFASSKDGVLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred cCCCccCceeEC-CCCCEEEEEEecCCcEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 233344578998 778777665 4688766664321 2233455666777788999999999877655 578888888
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEE
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 431 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 431 (498)
+.... .....+ .+.. +.+.|+|||++|+.++.++ +.+
T Consensus 321 ~~~~~---------------------------------~~~~~l-~~~~--------~~~~~SpDG~~ia~~~~~~-i~~ 357 (429)
T PRK01742 321 MSASG---------------------------------GGASLV-GGRG--------YSAQISADGKTLVMINGDN-VVK 357 (429)
T ss_pred EECCC---------------------------------CCeEEe-cCCC--------CCccCCCCCCEEEEEcCCC-EEE
Confidence 75421 111111 1110 2457899999999887765 666
Q ss_pred EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 432 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 432 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
||+.+++.......+ ....++|+|+|++|+.++.+|.+.+|.+.
T Consensus 358 ~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 358 QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 999988765333322 34678899999999999999988888763
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-14 Score=125.15 Aligned_cols=318 Identities=12% Similarity=0.102 Sum_probs=191.4
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCc
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~ 209 (498)
...+..++|++.-..+|++..|-.|++|+-... .... .....+..|++++|-|.+ +.|++|+..| |.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 455778899997778899999999999997763 2221 223334479999999954 5677777655 8899875321
Q ss_pred -eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 210 -MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
..........+ ........|| .+|++++|.+||..+++++. +..|.|||..++..+.-.....+.++-+.|+ |
T Consensus 174 n~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P 248 (445)
T KOG2139|consen 174 NANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P 248 (445)
T ss_pred cccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence 11111111111 1111122345 48999999999999999875 5789999999988765554566788999998 8
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
++.+|++++-|+..++|.... ..... ......+.|....|+|+|++|+.... |.-++|.+...........
T Consensus 249 dgd~lfaAt~davfrlw~e~q---~wt~e-rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~---- 319 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQ---SWTKE-RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR---- 319 (445)
T ss_pred CCCEEEEecccceeeeehhcc---cceec-ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC----
Confidence 899999999999999996541 22222 22223458999999999998765543 3455666554322211100
Q ss_pred ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC--------eEEEEECCCCcE
Q 010883 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--------CVYVYDLVSGEQ 439 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------~i~iwd~~~~~~ 439 (498)
..+........+...+....++. ..-...-+++|.|.|.+||+.-..+ .|.+||....-.
T Consensus 320 -~~~~k~~lliaDL~e~ti~ag~~-----------l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 320 -PQSIKRVLLIADLQEVTICAGQR-----------LCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred -cccceeeeeeccchhhhhhcCcc-----------cccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 00011111111111111111100 0011122346778999999876543 367788655433
Q ss_pred EEEec-c--CCCCeeeeEEcC---CCCeEEEEeCCCcEEEecCCC
Q 010883 440 VAALK-Y--HTSPVRDCSWHP---SQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 440 ~~~~~-~--h~~~v~~l~~sp---~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
+.... + .......++|+| ++++|..+=..|.+.-|.+.-
T Consensus 388 vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 388 VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 32221 1 111234566666 455777776778888877643
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.5e-15 Score=146.99 Aligned_cols=251 Identities=16% Similarity=0.220 Sum_probs=175.2
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCC
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSD 255 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~d 255 (498)
+...+.|+|-...++++...-.|+|||.+.++....+...... ...|+.+.+.. |..++++|+.|
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-------------~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-------------DTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-------------CCccceeeeecccchhheeeeccC
Confidence 4566788898888999887789999999998875554433322 12688888876 55689999999
Q ss_pred CeEEEEECCCC-----eeeEEEec-------cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cc
Q 010883 256 DCIYVYDLEAN-----KLSLRILA-------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GH 322 (498)
Q Consensus 256 g~i~vwd~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~ 322 (498)
|.|+||+-... +.+....+ ..+.-.-+.|....| +|++++.-..|+|||.. ....+..+. +.
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~----~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAH----KEQVVADIPYGS 1207 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecc----cceeEeecccCC
Confidence 99999964332 23332221 111224456764444 45555558899999997 444444443 33
Q ss_pred cccEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 323 LEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 323 ~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
...|+++.-+ +.|+.|++|..||.|++||.+.... +..+..++.|...
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------------------------------ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------------------------------DSLVCVYREHNDV 1256 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCc-------------------------------cccceeecccCCc
Confidence 4456776654 3479999999999999999987432 2456777777766
Q ss_pred EEEEEEEeccccCCCCc-EEEEEecCCeEEEEECCCCcEEEE--eccCC--C-CeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 402 RTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVAA--LKYHT--S-PVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~--~-~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
..++...+.. +|- -|++|+.||.|++||++....... +..|. + ..+++..+++.+.+|+|+. +.|+||+
T Consensus 1257 ~~Iv~~slq~----~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1257 EPIVHLSLQR----QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ccceeEEeec----CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 5555554443 333 599999999999999988533222 22333 3 5999999999999999998 9999999
Q ss_pred CCCCCCC
Q 010883 476 FPGNGEA 482 (498)
Q Consensus 476 ~~~~~~~ 482 (498)
+.+....
T Consensus 1332 ~~G~~l~ 1338 (1387)
T KOG1517|consen 1332 LSGEQLN 1338 (1387)
T ss_pred cChhhhc
Confidence 9876544
No 215
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=130.91 Aligned_cols=195 Identities=17% Similarity=0.282 Sum_probs=148.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-c
Q 010883 247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-E 324 (498)
Q Consensus 247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~ 324 (498)
..+|++..+|.|++||..+++.+..+.++...++.+.|... .++.+.+++.||+|++||+|... ......+..+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--ESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--hhhheeccCCCCC
Confidence 46889999999999999999999999999999999999743 67899999999999999999442 23334444554 4
Q ss_pred cEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-ccCc
Q 010883 325 GITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHS 399 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 399 (498)
+..+++.+-+++.+++|.. +-.|.+||+|..+. .+..+ ..|.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---------------------------------~l~~~~eSH~ 165 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ---------------------------------LLRQLNESHN 165 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccc---------------------------------hhhhhhhhcc
Confidence 6677777667788887753 56799999998543 12222 3344
Q ss_pred eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE----EEEeccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEe
Q 010883 400 VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRW 474 (498)
Q Consensus 400 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw 474 (498)
.. +....|.|. +.++|++|+.||.|.|||+..... +.++ .|...|..+.|..++ +.|.+-+...+..+|
T Consensus 166 DD--VT~lrFHP~---~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ 239 (376)
T KOG1188|consen 166 DD--VTQLRFHPS---DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIY 239 (376)
T ss_pred Cc--ceeEEecCC---CCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEE
Confidence 33 334446665 789999999999999999876432 2333 477889999999877 357788889999999
Q ss_pred cCCCCCCC
Q 010883 475 EFPGNGEA 482 (498)
Q Consensus 475 ~~~~~~~~ 482 (498)
++..+.+.
T Consensus 240 ele~~~~~ 247 (376)
T KOG1188|consen 240 ELEDGSEE 247 (376)
T ss_pred EccCCChh
Confidence 99988754
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.1e-14 Score=139.25 Aligned_cols=234 Identities=21% Similarity=0.206 Sum_probs=154.2
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
..|.+||..... ...+ ..+...+.+.+|+|||+.|++.+.+ ..|.+||+.+++...+....
T Consensus 184 ~~l~i~D~~g~~-~~~l---t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------ 247 (433)
T PRK04922 184 YALQVADSDGYN-PQTI---LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------ 247 (433)
T ss_pred EEEEEECCCCCC-ceEe---ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence 468999986542 2222 2334478999999999999988743 47999999887654332211
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCe--EEE
Q 010883 230 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKV 303 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~~g~~l~~-g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~--i~v 303 (498)
+...+.+|+|||+.|+. .+.+| .|++||+.+++. ..+..+.......+|+ ++++.|+.++ .+|. |++
T Consensus 248 -----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 248 -----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred -----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEE
Confidence 13446899999997764 44444 699999988775 4455665566788998 6777776665 4455 555
Q ss_pred EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883 304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 380 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
+|+. .+. ...+..+......++|+|||++|+..+.++ .|.+||+.+...
T Consensus 321 ~dl~----~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----------------------- 372 (433)
T PRK04922 321 VAAS----GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----------------------- 372 (433)
T ss_pred EECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-----------------------
Confidence 6654 222 222322333455789999999998765443 589999876321
Q ss_pred cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883 381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 457 (498)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 457 (498)
..+.... ....+.|+|||++|+..+.+ +.|+++++. +.....+..+.+.+...+|+|
T Consensus 373 ------------~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 373 ------------RTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ------------EECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 1111110 01245788999988877663 468888884 455666666677888889987
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.2e-14 Score=140.35 Aligned_cols=237 Identities=21% Similarity=0.240 Sum_probs=152.6
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
..|.++|.+.. ..... ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+....
T Consensus 176 ~~L~~~D~dG~-~~~~l---~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------ 239 (427)
T PRK02889 176 YQLQISDADGQ-NAQSA---LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------ 239 (427)
T ss_pred cEEEEECCCCC-CceEe---ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------
Confidence 45777777543 22222 1334578899999999999987753 46999999988654332211
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EeCCCeEEE--EECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCeEEEEc
Q 010883 230 DGGYSFGIFSLKFSTDGRELVA-GSSDDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWD 305 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd 305 (498)
+.+.+.+|+|||+.|+. .+.+|...| +|+..+. ...+..+........|+ ++++.|+..+ .+|...+|.
T Consensus 240 -----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 240 -----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred -----CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence 13567899999998875 566766444 4555544 45555566666778998 6777766555 356667776
Q ss_pred CccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883 306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 382 (498)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
+... .+. ...+..+........|+|||++|+..+.++ .|.+||+.+..
T Consensus 313 ~~~~--~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-------------------------- 363 (427)
T PRK02889 313 MPAS--GGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-------------------------- 363 (427)
T ss_pred EECC--CCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC--------------------------
Confidence 5411 222 222222223344678999999998777654 59999987632
Q ss_pred cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883 383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 458 (498)
...+.... ....|.|+|||+.|+.++.++ .+++.++ ++.....+..+.+.+...+|+|-
T Consensus 364 ---------~~~lt~~~-------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 ---------VTALTDTT-------RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------eEEccCCC-------CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 11111111 013568899999998887654 4666676 56666677667788889999874
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.5e-14 Score=136.54 Aligned_cols=234 Identities=18% Similarity=0.202 Sum_probs=154.6
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECCCCceeccccccccccCccccccC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
..|.++|.+... .... ..+...+...+|+|||+.|+..+. +..|.+||+.+++...+..
T Consensus 182 ~~l~~~d~dg~~-~~~l---t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-------------- 243 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYL---TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-------------- 243 (435)
T ss_pred eEEEEECCCCCC-cEEE---ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence 478889886542 2222 234557999999999999998764 4689999998886543322
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CC--eEEE
Q 010883 230 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 303 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~~g~~l~~-g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~v 303 (498)
+.+.+...+|+|||+.|+. .+.++ .|++||+.+++. ..+..+........|+ ++++.|+..+. +| .|++
T Consensus 244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence 1224667899999998764 44444 488889988765 4566666667789998 67777776653 33 5777
Q ss_pred EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883 304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 380 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
+|+. . .....+..+...+....|+|||+.|+....+ ..|.+||+....
T Consensus 319 ~d~~----g-~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------------------------ 369 (435)
T PRK05137 319 MNAD----G-SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------------------------ 369 (435)
T ss_pred EECC----C-CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc------------------------
Confidence 7874 2 2333443344556778899999999877654 357778865421
Q ss_pred cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC------CeEEEEECCCCcEEEEeccCCCCeeeeE
Q 010883 381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD------SCVYVYDLVSGEQVAALKYHTSPVRDCS 454 (498)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~ 454 (498)
...+.... ....+.|+|||+.|+..+.+ ..++++|+..+.. ..+. ..+.+...+
T Consensus 370 -----------~~~lt~~~-------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~ 429 (435)
T PRK05137 370 -----------ERILTSGF-------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPA 429 (435)
T ss_pred -----------eEeccCCC-------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcc
Confidence 11111100 12456889999998876543 3688889866554 3444 345577888
Q ss_pred EcCC
Q 010883 455 WHPS 458 (498)
Q Consensus 455 ~sp~ 458 (498)
|+|-
T Consensus 430 Wsp~ 433 (435)
T PRK05137 430 WSPL 433 (435)
T ss_pred cCCC
Confidence 8874
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.3e-14 Score=122.14 Aligned_cols=205 Identities=21% Similarity=0.185 Sum_probs=138.5
Q ss_pred CCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE-----------EEEeecCCCceeEEEEEeCCCCCeEEEEEC-
Q 010883 130 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI-----------QKDILAKSLRWTVTDTSLSPDQRHLVYASM- 196 (498)
Q Consensus 130 h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~- 196 (498)
....|+|++|-|.+ +.|+.|+..| |.+|..+..... .......+| .+|++++|.+||..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 45679999999975 6788888765 899987542111 112233455 48999999999999999886
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 276 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 276 (498)
|..|.|||..++....+... ..+.+.-+.|||||.+|++++-|+..++|+........+.....
T Consensus 217 sssi~iWdpdtg~~~pL~~~----------------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs 280 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPK----------------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS 280 (445)
T ss_pred cceEEEEcCCCCCccccccc----------------CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC
Confidence 56899999999987665521 11268889999999999999999999999665544333344455
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc--CCCc---------eeEEec-----c----ccccEEEEEEcCCCC
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGK---------PAGVLM-----G----HLEGITFIDSRGDGR 336 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~---------~~~~~~-----~----~~~~v~~l~~~~~~~ 336 (498)
+.|...+|+|....+|++.+..-. +|.+.... .... .+..+. . -.+.+.+++|.|.|.
T Consensus 281 grvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe 358 (445)
T KOG2139|consen 281 GRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE 358 (445)
T ss_pred CceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC
Confidence 699999998544445555554433 33332110 0000 011110 1 135688999999999
Q ss_pred EEEEEeCCC--------cEEEEeCCC
Q 010883 337 YLISNGKDQ--------AIKLWDIRK 354 (498)
Q Consensus 337 ~l~s~~~dg--------~i~iwd~~~ 354 (498)
+|++.-..+ .|.+||.+.
T Consensus 359 yLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 359 YLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEEEEcCCchhhhhhhhhhhhcccc
Confidence 999876543 366677665
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.3e-12 Score=111.86 Aligned_cols=282 Identities=14% Similarity=0.182 Sum_probs=182.3
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CC------CeEEEEEC
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MS------PIVHIVDV 205 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d------~~i~iwd~ 205 (498)
....++|+.|..-+++|..+| .+||+.+-- .+......+.+.+.-+..--..++|+..+ .+ +.|.|||-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 344599999999999998776 899998752 11111111111121122222445565433 22 37999995
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEecc--CCCeeEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAH--TSDVNTV 282 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~--~~~v~~~ 282 (498)
...++...... ..+|.++.+.++ .|++.- .+.|+||... +.+.++.+... ...+.++
T Consensus 83 ~k~~~i~el~f-----------------~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 83 LKERCIIELSF-----------------NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred ccCcEEEEEEe-----------------ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEee
Confidence 44444333332 237999999866 466554 5679999988 44555555422 3334444
Q ss_pred EEeCCCCCEEEE-eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCCCccc
Q 010883 283 CFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNAS 360 (498)
Q Consensus 283 ~~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~ 360 (498)
+-. .+..+|+. |-.-|.|+|-|+.... ..+...+.+|...|.+++.+-+|..+|+++..|+ |+|||..+
T Consensus 143 ~~~-~~k~~LafPg~k~GqvQi~dL~~~~--~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~------ 213 (346)
T KOG2111|consen 143 CPT-SNKSLLAFPGFKTGQVQIVDLASTK--PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED------ 213 (346)
T ss_pred cCC-CCceEEEcCCCccceEEEEEhhhcC--cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC------
Confidence 432 33344444 3456999999997332 1135778899999999999999999999999998 89999988
Q ss_pred cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc--
Q 010883 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-- 438 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-- 438 (498)
+..+..++...... ..++++|||+..+|+++|..|+|+||.+....
T Consensus 214 ----------------------------g~~l~E~RRG~d~A----~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 214 ----------------------------GTLLQELRRGVDRA----DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred ----------------------------CcEeeeeecCCchh----eEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCC
Confidence 35555555443322 23566888899999999999999999876422
Q ss_pred -E---------------------EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 439 -Q---------------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 439 -~---------------------~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
. +..++-..++..-++|-.+.+.++..+.||..+-+.+...
T Consensus 262 ~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 262 EDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred ccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 1 1112223456666788877666777778898776665544
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.1e-13 Score=133.45 Aligned_cols=202 Identities=17% Similarity=0.148 Sum_probs=137.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCC-
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSP- 198 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~- 198 (498)
...+..+...+...+|||||+.||..+. +..|.+|++.+++... .....+ .+..++|+|||+.|+.. +.++
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~---~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR---HNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCC---CcCCeEECCCCCEEEEEEcCCCC
Confidence 4456667788999999999999987643 4579999998874322 222222 35568999999988875 3344
Q ss_pred -eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeeeEEEec
Q 010883 199 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILA 274 (498)
Q Consensus 199 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~ 274 (498)
.|.+||+.+++...+... ...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+..
T Consensus 267 ~~I~~~d~~tg~~~~lt~~-----------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~ 328 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDG-----------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW 328 (429)
T ss_pred cEEEEEECCCCCEEEccCC-----------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec
Confidence 599999988765443221 1146678999999988877754 3 566668777654 34444
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc---EE
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA---IK 348 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~---i~ 348 (498)
+........|+ +++++|+..+.+ ..|.+||+. .+. ...+... .......|+|||+.|+.++.++. +.
T Consensus 329 ~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~----~g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 329 EGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLA----TGG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred CCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECC----CCC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 44556678898 777777765543 358888986 333 2333321 22346789999999999888764 66
Q ss_pred EEeCCC
Q 010883 349 LWDIRK 354 (498)
Q Consensus 349 iwd~~~ 354 (498)
++++..
T Consensus 402 ~~~~~G 407 (429)
T PRK03629 402 LVSTDG 407 (429)
T ss_pred EEECCC
Confidence 677643
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=8.6e-13 Score=121.28 Aligned_cols=293 Identities=15% Similarity=0.215 Sum_probs=187.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-----EC-----CCeE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-----SM-----SPIV 200 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----s~-----d~~i 200 (498)
..++...++|++|+++|.+ .+..++|++...+..+... ... .+.++.|+|-+.+|.+- .. ...+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~----~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCV----ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEe----ccc-eeeeeeecccccccccccccccccCCCCCCCce
Confidence 3447889999999998877 4568999999887522222 122 68999999999999862 11 2357
Q ss_pred EEEECCCCceecccccccccc--Cccccc-----------------------cCCCCceecEEEEEEcCCCC--EEEE--
Q 010883 201 HIVDVGSGTMESLANVTEIHD--GLDFSA-----------------------ADDGGYSFGIFSLKFSTDGR--ELVA-- 251 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~h~~~i~~~~~s~~g~--~l~~-- 251 (498)
.+|+++++.....+... ... ...|+. ....-|...|..+.++|.+. .+|+
T Consensus 108 ~v~~vet~~~~s~~q~k-~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKK-MQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eeeeeccceehhheehh-hhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence 89999985432222211 111 011111 11112455788888888633 3443
Q ss_pred ---EeCCCeEEEEECCCCeeeEEE---eccCCCeeEEEEeCCCCCEEEEeeC--C---------CeEEEEcCccccCCCc
Q 010883 252 ---GSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSD--D---------NLCKVWDRRCLNVKGK 314 (498)
Q Consensus 252 ---g~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~s~--d---------g~i~vwd~~~~~~~~~ 314 (498)
++.-+.|+||.......-..+ .-....-..+.|++....+|+.++. | .++++.++. +.
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-----g~ 261 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-----GE 261 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-----Cc
Confidence 344567899987632221111 1122334557787444444444432 2 367777774 33
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
....-....++|.++.|+|+++.+++ |-+-..+.|||++. ..+
T Consensus 262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----------------------------------~~v 306 (566)
T KOG2315|consen 262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----------------------------------KPV 306 (566)
T ss_pred eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----------------------------------CEe
Confidence 33333335799999999999987664 55677899999985 344
Q ss_pred EEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC--
Q 010883 393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-- 467 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~-- 467 (498)
..+.... + ....|+|.|++|+.++. .|.|-|||+.+.+++..+.... -+-+.|+|||.+|+|+..
T Consensus 307 ~df~egp--R------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 307 FDFPEGP--R------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred EeCCCCC--c------cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccc
Confidence 4333221 1 12246779999998876 4899999999999998887543 355799999999988864
Q ss_pred ----CCcEEEecCCCCC
Q 010883 468 ----DGDVVRWEFPGNG 480 (498)
Q Consensus 468 ----Dg~i~iw~~~~~~ 480 (498)
|+.++||++.+..
T Consensus 377 RlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cEEecCCeEEEEecCce
Confidence 7889999998753
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=6.9e-14 Score=139.18 Aligned_cols=261 Identities=13% Similarity=0.141 Sum_probs=167.9
Q ss_pred cCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883 172 AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l 249 (498)
.+.|...|..++.++.. .++++||.||+|++|+...-... ..... ...+.. -...+.++...+.+..+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS-----~ltys~-----~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS-----ELTYSP-----EGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeee-----eEEEec-----cCCceEEEEeccCCCeE
Confidence 45667788888887755 99999999999999998642221 00000 000100 12378899999999999
Q ss_pred EEEeCCCeEEEEECCCCee-------eEEEecc-CCCe-eEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEE-
Q 010883 250 VAGSSDDCIYVYDLEANKL-------SLRILAH-TSDV-NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGV- 318 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~-------~~~~~~~-~~~v-~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~- 318 (498)
|+++.||.|.+.++..... .+....+ .+.+ ..-+|...... .++.+..-+.|..||++.. .....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~----~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR----HDAWRL 1189 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh----hhHHhh
Confidence 9999999999999876211 1111112 2233 33344433344 7888889999999999833 32222
Q ss_pred -eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883 319 -LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397 (498)
Q Consensus 319 -~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
.....+.|++++.+|.+++++.|...|.+.+||+|-. .++..+..
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----------------------------------~~i~sw~~ 1235 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----------------------------------VPILSWEH 1235 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecC----------------------------------ceeecccC
Confidence 2234578999999999999999999999999999973 33333332
Q ss_pred CceeEEEEEEEeccccCCCCcEEEEE-e-cCCeEEEEECCCCcEEEEeccC-------------------CCCeeeeEEc
Q 010883 398 HSVLRTLIRCHFSPVYSTGQKYIYTG-S-HDSCVYVYDLVSGEQVAALKYH-------------------TSPVRDCSWH 456 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~s~~~~~l~~g-~-~dg~i~iwd~~~~~~~~~~~~h-------------------~~~v~~l~~s 456 (498)
... ..+.....++. .+.....+++ + ..+.|-+|++.+|.+...+... .-....+.+.
T Consensus 1236 P~~-~~i~~v~~~~~-~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1236 PAR-APIRHVWLCPT-YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred ccc-CCcceEEeecc-CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 111 22222222322 2233444444 3 4678999999998766555322 1112233444
Q ss_pred CCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 457 PSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 457 p~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
..+.++.+|+.|+.|+.||.......
T Consensus 1314 ~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cCCceeeecCCccceeeccCCCcccc
Confidence 45668999999999999999876544
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=4.2e-15 Score=135.29 Aligned_cols=187 Identities=19% Similarity=0.256 Sum_probs=132.2
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEee--cCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCceeccccc
Q 010883 140 SADGSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANV 216 (498)
Q Consensus 140 s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 216 (498)
.|+|--|..|..-|.|.+.|.... .+.++.. ..-....|+++.|.|.+ ..++++-.+|.+.++|..-.........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 345666778888888888886542 1111110 01123489999999955 4556667799999998632111111111
Q ss_pred cccccCccccccCC------------CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 217 TEIHDGLDFSAADD------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 217 ~~~~~~~~~~~~~~------------~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
....++-.|..... .--.+.|...+|+|||++||+.+.||.++|+|..+.+++..++.--+...|++|
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 11111111111100 011337889999999999999999999999999998887766666788999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
+ ||+++|++|+.|-.|.||.+. ..+.+..-.+|...|..++|.
T Consensus 341 S-PDGKyIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 341 S-PDGKYIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred c-CCccEEEecCCcceEEEEEec----cceEEEeccccccceeeEeec
Confidence 8 899999999999999999998 888999999999999999998
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=3e-13 Score=116.05 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=174.8
Q ss_pred CCceEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EECCCeEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s~d~~i~iwd~~~~ 208 (498)
-..|.-+.|..|..+++. ...++.|.+|++...+-..++. ....++.+++|||||+.|+. ...+-.|.+|.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 345677889998876665 4678899999998765444443 33447999999999976654 556889999999887
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------------------------
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------------------------- 255 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------------------------------- 255 (498)
+...+..... .+..++|+|||++.+.++..
T Consensus 125 ~~~~~~~pK~-----------------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs 187 (447)
T KOG4497|consen 125 KGYLLPHPKT-----------------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS 187 (447)
T ss_pred eeEEeccccc-----------------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence 7654443332 34556666666655544321
Q ss_pred ---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC---------------------
Q 010883 256 ---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------------- 311 (498)
Q Consensus 256 ---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------------- 311 (498)
..+.+||---.-.+..+ .-.-.+..++|+ |.+++|+.|+.|+.+++.+--..+.
T Consensus 188 Pdg~~laVwd~~Leykv~aY-e~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 188 PDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred CCCcEEEEecchhhheeeee-eeccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 12334442211111111 122467889998 7899999999999998854110000
Q ss_pred -----------------------------------------CCceeEEeccccccEEEEEEcCCCCEEEEEeC--CCcEE
Q 010883 312 -----------------------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIK 348 (498)
Q Consensus 312 -----------------------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--dg~i~ 348 (498)
..++...+....-++--++|++|..++++-.. -..+-
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW 345 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW 345 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence 00001111122334667899999999887653 35799
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 428 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 428 (498)
+||++..+..... ... ..+... .|.|....|+.+.....
T Consensus 346 ~Wdlq~l~l~avL----------------------------------iQk---~piraf----~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 346 LWDLQNLKLHAVL----------------------------------IQK---HPIRAF----EWDPGRPRLVVCTGKSR 384 (447)
T ss_pred EEechhhhhhhhh----------------------------------hhc---cceeEE----EeCCCCceEEEEcCCce
Confidence 9999874322111 000 112222 34556777777777778
Q ss_pred EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883 429 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 471 (498)
Q Consensus 429 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i 471 (498)
+++|.......+.. ....-.|..+.|+-+|..++-++.|-..
T Consensus 385 LY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 385 LYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 99999765444433 3344679999999999999999998643
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.9e-15 Score=134.71 Aligned_cols=265 Identities=18% Similarity=0.215 Sum_probs=189.7
Q ss_pred cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEE
Q 010883 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL 249 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l 249 (498)
+..|.+.|..+.|+..|..|++++.|..|.+||...+.....+. .||...|....|.| +.+.+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------------SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------------SGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------------cccccchhhhhccCCCCCcCc
Confidence 45788899999999999999999999999999998876543332 26777888888988 44679
Q ss_pred EEEeCCCeEEEEECCCCe-e--eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc--
Q 010883 250 VAGSSDDCIYVYDLEANK-L--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-- 324 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-- 324 (498)
++++.||.|++=.+.... + ...+..|.++|..++.-|....-|++++.|+.+.-+|+++........ .-..+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~ 281 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKER 281 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccc
Confidence 999999999987664332 2 345668999999999988888999999999999999998554333332 2223333
Q ss_pred -cEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883 325 -GITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 402 (498)
Q Consensus 325 -~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (498)
....++..|.. ..+++++.|..+++||.+........ ..+..+..+....
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n----------------------------~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN----------------------------GVLDKFCPHHLVE 333 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc----------------------------chhhhcCCccccc
Confidence 56788888855 48999999999999999885433221 1222222222111
Q ss_pred EEEEEEeccccCCCCcEEEEEecCCeEEEEECCC--C----------cEEEE-eccCCC--CeeeeEE-cCCCCeEEEEe
Q 010883 403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--G----------EQVAA-LKYHTS--PVRDCSW-HPSQPMLVSSS 466 (498)
Q Consensus 403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~----------~~~~~-~~~h~~--~v~~l~~-sp~~~~l~s~~ 466 (498)
.-...+...+|+.++.-|.+.-.|-.|+++.-.. | ..+.. +++|.. .|..+.| -|...++++|+
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 1112223346666777777777788899995433 2 12233 678864 4667754 56778999999
Q ss_pred CCCcEEEecCCCCC
Q 010883 467 WDGDVVRWEFPGNG 480 (498)
Q Consensus 467 ~Dg~i~iw~~~~~~ 480 (498)
+=|.|.||+-.+++
T Consensus 414 DCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGE 427 (559)
T ss_pred ccceEEEEecchhH
Confidence 99999999977654
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=8e-16 Score=137.43 Aligned_cols=230 Identities=17% Similarity=0.198 Sum_probs=184.8
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
....+.++.+|++|+.|+..|.|..+|..+++....+.+.+ .|.++.|..+.+++|++ ....
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-----------------tv~Dv~~LHneq~~AVA-QK~y 192 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-----------------TVRDVTFLHNEQFFAVA-QKKY 192 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-----------------hhhhhhhhcchHHHHhh-hhce
Confidence 46778999999999999999999999999998877766554 68889999888877776 5667
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
++|||- .|..+..+..| ..|..+.|. |.--+|++++..|.++.-|+. .++.+..+....+.+..+.-+|-...
T Consensus 193 ~yvYD~-~GtElHClk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS----~GklVa~~~t~~G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 193 VYVYDN-NGTELHCLKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVS----TGKLVASIRTGAGRTDVMKQNPYNAV 265 (545)
T ss_pred EEEecC-CCcEEeehhhc-Cchhhhccc-chhheeeecccCCceEEEeec----hhhhhHHHHccCCccchhhcCCccce
Confidence 999995 45566777555 578999997 677889999999999999998 88888888888889999999999889
Q ss_pred EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883 338 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 417 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 417 (498)
+-+|...|+|.+|..... .++..+-.|.... .++++.++|
T Consensus 266 ih~GhsnGtVSlWSP~sk----------------------------------ePLvKiLcH~g~V------~siAv~~~G 305 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSK----------------------------------EPLVKILCHRGPV------SSIAVDRGG 305 (545)
T ss_pred EEEcCCCceEEecCCCCc----------------------------------chHHHHHhcCCCc------ceEEECCCC
Confidence 999999999999998763 2333333444222 223667799
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 418 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 418 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
+|+++.+.|..++|||++.-..+.++.. .-+...+++|..| +++++....|.||.
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 9999999999999999998887777654 4567888998666 44445556799995
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.7e-13 Score=130.61 Aligned_cols=215 Identities=20% Similarity=0.172 Sum_probs=141.0
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEec
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILA 274 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~ 274 (498)
..|.+||........+.. +...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..
T Consensus 184 ~~l~i~D~~g~~~~~lt~-----------------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~ 245 (433)
T PRK04922 184 YALQVADSDGYNPQTILR-----------------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVAS 245 (433)
T ss_pred EEEEEECCCCCCceEeec-----------------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eecc
Confidence 368899986554332221 2236889999999999998774 346999999887653 3444
Q ss_pred cCCCeeEEEEeCCCCCEE-EEeeCCC--eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCc--EE
Q 010883 275 HTSDVNTVCFGDESGHLI-YSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IK 348 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l-~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~--i~ 348 (498)
..+...++.|+ ++++.| ++.+.+| .|++||+. .+. ...+..+.......+|+|||+.|+..+. +|. |+
T Consensus 246 ~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~----~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 246 FRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLG----SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred CCCCccCceEC-CCCCEEEEEEeCCCCceEEEEECC----CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 55556688998 667655 4556665 58999986 333 4455555555677899999998887764 444 55
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC-
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS- 427 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg- 427 (498)
++|+..... +.+ ++.+.. ...+.|||||++|+..+.++
T Consensus 320 ~~dl~~g~~--------------------------------~~l-t~~g~~--------~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 320 RVAASGGSA--------------------------------ERL-TFQGNY--------NARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred EEECCCCCe--------------------------------EEe-ecCCCC--------ccCEEECCCCCEEEEEECCCC
Confidence 566554210 011 111111 12457889999998876543
Q ss_pred --eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC---CcEEEecCCCC
Q 010883 428 --CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN 479 (498)
Q Consensus 428 --~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D---g~i~iw~~~~~ 479 (498)
.|++||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++.+.
T Consensus 359 ~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 359 QYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred ceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 6999999888765 443 33345678999999987766653 35777777554
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8.8e-14 Score=122.06 Aligned_cols=258 Identities=19% Similarity=0.183 Sum_probs=176.7
Q ss_pred eeEEEEEeCCCCC--eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 177 WTVTDTSLSPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 177 ~~v~~~~~sp~~~--~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
..|+.++|.-+++ .+...+.+..+..+.+....+.....-. ......+.+|..++.. || .|++|-.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~----------~~~~l~~~~I~gl~~~-dg-~Litc~~ 123 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA----------KTVSLGTKSIKGLKLA-DG-TLITCVS 123 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccc----------cccccccccccchhhc-CC-EEEEEec
Confidence 3577777765553 3333335555666655544432221000 0001223356666554 44 5888889
Q ss_pred CCeEEEEECCCCe----eeEEEeccCCCeeEEEEeCCCCCEEEEeeCC--CeEEEEcCccccCCCceeEEeccc------
Q 010883 255 DDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKPAGVLMGH------ 322 (498)
Q Consensus 255 dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~------ 322 (498)
+|.+.+|..+.+. .+..+.. ...+..+.-++....++++|+.. ..+.+||+. ..+++..-..-
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle----~~~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLE----QSKQIWSAKNVPNDRLG 198 (412)
T ss_pred CCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecc----cceeeeeccCCCCcccc
Confidence 9999999988443 2233323 35667777777778889999999 899999997 44333322211
Q ss_pred ---cccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883 323 ---LEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397 (498)
Q Consensus 323 ---~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
.-.++.+.|-+. ...|++++.-+.+++||.+... +++..+..
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---------------------------------RPV~~fd~ 245 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---------------------------------RPVAQFDF 245 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---------------------------------cceeEecc
Confidence 124677888887 7899999999999999998643 44555544
Q ss_pred CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
...... +....|++++|++|..-|.+..||++.++.+.. +++-.+.|+++..+|.+++|+++|-|..|+|+|+
T Consensus 246 ~E~~is------~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 246 LENPIS------STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ccCcce------eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 332222 224456899999999999999999999998877 8889999999999999999999999999999999
Q ss_pred CCCCCCCCccchhc
Q 010883 477 PGNGEAAPPLNKKR 490 (498)
Q Consensus 477 ~~~~~~~~~~~~~~ 490 (498)
.+.........+.+
T Consensus 320 ktrkll~kvYvKs~ 333 (412)
T KOG3881|consen 320 KTRKLLHKVYVKSR 333 (412)
T ss_pred ccchhhhhhhhhcc
Confidence 98655544444444
No 230
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.62 E-value=2.5e-13 Score=114.87 Aligned_cols=276 Identities=19% Similarity=0.200 Sum_probs=178.0
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---CCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccc
Q 010883 152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 227 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (498)
-|.+.+|++...+...-..........+..+.|.- +|. .++-+-..|.|.++..........+..-.... .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i-- 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---I-- 119 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---h--
Confidence 46788999877544331111222233577777764 444 55666778889998865433222221111000 0
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883 228 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305 (498)
Q Consensus 228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd 305 (498)
......++.|++.+..++++..+|.+.+-+........ .++.|.-.+....|+..+++++++|+.|+.+..||
T Consensus 120 -----~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 120 -----SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred -----hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 00035678999999999999999999866655554433 67899999999999988889999999999999999
Q ss_pred CccccCCCceeE-EeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccc
Q 010883 306 RRCLNVKGKPAG-VLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 383 (498)
Q Consensus 306 ~~~~~~~~~~~~-~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
+|.. .+.+. ..+-|..+|.+|.-+| .+.+|++|+.|..|++||.|++..+...
T Consensus 195 ~R~p---~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---------------------- 249 (339)
T KOG0280|consen 195 IRIP---KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---------------------- 249 (339)
T ss_pred ecCC---cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----------------------
Confidence 9832 23333 2556889999999876 5789999999999999999986533211
Q ss_pred ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--c---EEEEeccCCCCeeeeEEcCC
Q 010883 384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--E---QVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~l~~sp~ 458 (498)
- .....+.+...+|... +++|+++-.+| .+|-+...+ + .....+.|.+-+..-.|...
T Consensus 250 -----------~---~v~GGVWRi~~~p~~~--~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 250 -----------A---KVGGGVWRIKHHPEIF--HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred -----------C---ccccceEEEEecchhh--hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence 0 0012333344444321 33444444444 556655443 2 33444578887888888655
Q ss_pred CCeEEEEe-CCCcEE-EecCCCC
Q 010883 459 QPMLVSSS-WDGDVV-RWEFPGN 479 (498)
Q Consensus 459 ~~~l~s~~-~Dg~i~-iw~~~~~ 479 (498)
..+|+||+ .|..++ +|-.-++
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cceeeeeeccccceeeeeeeccC
Confidence 56888876 677755 8865443
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.1e-13 Score=130.47 Aligned_cols=206 Identities=17% Similarity=0.125 Sum_probs=141.3
Q ss_pred CCCCCccccCCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EE
Q 010883 120 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-AS 195 (498)
Q Consensus 120 ~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s 195 (498)
....+..+..|...+.+.+|||||+.|+..+. +..|.+||+.++.... . ..+.+.+...+|+|||+.|+. .+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l---~~~~g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V---GNFPGMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e---ecCCCcccCcEECCCCCEEEEEEe
Confidence 34445667788899999999999999988764 4689999998874322 1 223446778999999998765 44
Q ss_pred CCC--eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCeeeE
Q 010883 196 MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSL 270 (498)
Q Consensus 196 ~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-d--g~i~vwd~~~~~~~~ 270 (498)
.++ .|.+||+.++....+.. +........|+|||+.|+..+. + ..|+++|+..++. .
T Consensus 266 ~~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~ 327 (435)
T PRK05137 266 QGGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R 327 (435)
T ss_pred cCCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence 444 47888988876543322 1123556899999999888764 2 3688999877654 4
Q ss_pred EEeccCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---
Q 010883 271 RILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD--- 344 (498)
Q Consensus 271 ~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d--- 344 (498)
.+..+...+....|+ ++++.|+..+.+ ..|.+||+. . .....+. ....+..+.|+|||+.|+..+.+
T Consensus 328 ~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~----~-~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 328 RISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPD----G-SGERILT-SGFLVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred EeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECC----C-CceEecc-CCCCCCCCeECCCCCEEEEEEccCCC
Confidence 454455667778998 778877766543 357788874 2 2223332 22346778999999998765543
Q ss_pred ---CcEEEEeCCC
Q 010883 345 ---QAIKLWDIRK 354 (498)
Q Consensus 345 ---g~i~iwd~~~ 354 (498)
..+.++|+..
T Consensus 401 ~~~~~L~~~dl~g 413 (435)
T PRK05137 401 GGAPKLYTVDLTG 413 (435)
T ss_pred CCcceEEEEECCC
Confidence 2577777765
No 232
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.2e-13 Score=114.97 Aligned_cols=253 Identities=15% Similarity=0.144 Sum_probs=161.7
Q ss_pred CCCcccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-----CCC----eE
Q 010883 122 NGPWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-----DQR----HL 191 (498)
Q Consensus 122 ~~~~~l~-~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~----~l 191 (498)
.....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+.... -.++++.|.+ .++ .+
T Consensus 46 r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S------i~~nslgFCrfSl~~~~k~~eqll 118 (323)
T KOG0322|consen 46 RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS------IVVNSLGFCRFSLVKKPKNSEQLL 118 (323)
T ss_pred ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee------eeccccccccceeccCCCcchhhe
Confidence 3344455 67888999999998 457777899999999998753332211 2344444443 221 11
Q ss_pred EEEECCC-eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCC--EEEEEeCCCeEEEEECCCCe
Q 010883 192 VYASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR--ELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 192 ~~~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~--~l~~g~~dg~i~vwd~~~~~ 267 (498)
++-+... .+++-|......... ......+..+.+.|..+.- ++. ++++|..+|.|.+||+.++.
T Consensus 119 ~yp~rgsde~h~~D~g~~tqv~i------------~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~ 186 (323)
T KOG0322|consen 119 EYPSRGSDETHKQDGGDTTQVQI------------ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGD 186 (323)
T ss_pred ecCCcccchhhhhccCccceeEc------------cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCc
Confidence 1111100 122222111111111 1111123344677777543 333 56778889999999999973
Q ss_pred e----------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883 268 L----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 268 ~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
. ......|..+|.++.|. +.-..=++|+.+..+..|.+......-..-....-..-+|..+...||++.
T Consensus 187 ~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 187 KIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred eeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE
Confidence 3 33445799999999996 444445678888889999886321122222223334467888999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883 338 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 417 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 417 (498)
+|+++.|+.|+||..+++ +++..++-|.. .+ .+.+|+|+.
T Consensus 266 lATAGWD~RiRVyswrtl----------------------------------~pLAVLkyHsa--gv----n~vAfspd~ 305 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTL----------------------------------NPLAVLKYHSA--GV----NAVAFSPDC 305 (323)
T ss_pred EeecccCCcEEEEEeccC----------------------------------Cchhhhhhhhc--ce----eEEEeCCCC
Confidence 999999999999999984 56666666662 22 334777899
Q ss_pred cEEEEEecCCeEEEEEC
Q 010883 418 KYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 418 ~~l~~g~~dg~i~iwd~ 434 (498)
.++|+++.|++|-+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 99999999999999986
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.5e-13 Score=128.93 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=128.8
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCeEEEEcCccccC
Q 010883 236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNV 311 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~ 311 (498)
.+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+.+....|+ |+++.|+ +.+.+|...+|.+..
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~--- 271 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA--- 271 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC---
Confidence 68899999999999887643 46999999988753 344455666789998 6676665 667788877776541
Q ss_pred CCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 312 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
.+.....+..+........|+|||+.|+..+. ++...||.+...... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-------------------------------~ 320 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-------------------------------A 320 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-------------------------------e
Confidence 22334555555555677889999998886654 466667665421100 0
Q ss_pred eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 467 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~ 467 (498)
....+.+. ....+.|||||++|+..+.++ .|++||+.+++... +..+ .......|+|||+.|+.++.
T Consensus 321 ~~lt~~g~--------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 321 QRVTFTGS--------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred EEEecCCC--------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEe
Confidence 01111111 112457889999998877654 69999998887543 3322 34567899999998877765
Q ss_pred CC-c--EEEecCC
Q 010883 468 DG-D--VVRWEFP 477 (498)
Q Consensus 468 Dg-~--i~iw~~~ 477 (498)
++ . +.+.++.
T Consensus 391 ~~g~~~l~~~~~~ 403 (427)
T PRK02889 391 QGGRSVLAAVSSD 403 (427)
T ss_pred cCCCEEEEEEECC
Confidence 44 3 4444553
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=9.2e-12 Score=116.64 Aligned_cols=258 Identities=16% Similarity=0.168 Sum_probs=154.8
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCcee
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTME 211 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~ 211 (498)
.-..+.|+|||+++++++.||.|.++|+.+++.+.+..... ....+++++||++++++. ..+.+.++|.++.+..
T Consensus 38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 33457899999999999999999999999998776654332 478899999999999876 4889999999998776
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeE-EEeccCCCeeEEEEeCCCC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESG 289 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 289 (498)
........... +....+..+..+|....++..- ..+.|.+.|....+.+. +............|. +++
T Consensus 114 ~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d-pdg 183 (369)
T PF02239_consen 114 KTIPTGGMPVD---------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD-PDG 183 (369)
T ss_dssp EEEE--EE-TT---------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE--TTS
T ss_pred eeccccccccc---------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC-ccc
Confidence 65443322110 1223677888888888555554 45889999987765332 233344566788886 777
Q ss_pred CEEEEe-eCCCeEEEEcCcccc---------------------------------------------------CCCceeE
Q 010883 290 HLIYSG-SDDNLCKVWDRRCLN---------------------------------------------------VKGKPAG 317 (498)
Q Consensus 290 ~~l~s~-s~dg~i~vwd~~~~~---------------------------------------------------~~~~~~~ 317 (498)
++++++ ..+..|-++|..... ...+.+.
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 776554 455677777764110 0111122
Q ss_pred EeccccccEEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE
Q 010883 318 VLMGHLEGITFIDSRGDGRYLISN----GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 393 (498)
Q Consensus 318 ~~~~~~~~v~~l~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
.+.....+ ..+..+|+++++.+. ...+.|.++|.++.. .+.
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~----------------------------------~~~ 308 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK----------------------------------VVK 308 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE----------------------------------EEE
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc----------------------------------eeE
Confidence 22222222 456678888888877 344778888888742 222
Q ss_pred EEccCceeEEEEEEEeccccCCCCcEEEEEecC--CeEEEEECCCCcEEEEec
Q 010883 394 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~ 444 (498)
.+..... .. ..++.|++||+.+..+..+ +.|.+||..+.+.+.++.
T Consensus 309 ~i~~~~~-~~----~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 309 TITPGPG-KR----VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEeccCC-Cc----EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 2221111 01 2344678899988776654 369999999999998886
No 235
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.57 E-value=5.5e-12 Score=114.70 Aligned_cols=299 Identities=16% Similarity=0.168 Sum_probs=196.2
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-------
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------- 198 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~------- 198 (498)
.+..-.-++..++|||.|.+|++....| |.+|.......+.... |. .|..+.|+|.++||.+-+..+
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~----~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR----HP-DVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred cccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee----cC-CceecccCcccceeeeeccCCccChhhc
Confidence 3444677889999999999999887665 8999987764333322 22 599999999999999976543
Q ss_pred --------eEEEEECCCCceecccccccccc----CccccccCC-------------------CC------ceecEEEEE
Q 010883 199 --------IVHIVDVGSGTMESLANVTEIHD----GLDFSAADD-------------------GG------YSFGIFSLK 241 (498)
Q Consensus 199 --------~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~~------h~~~i~~~~ 241 (498)
.+.+||+.++.....+....... .+.++.... .. ....|....
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEE
Confidence 49999999988765544332220 011111100 00 124678888
Q ss_pred EcCCC--CEEEE-----EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-----------CCCeEEE
Q 010883 242 FSTDG--RELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-----------DDNLCKV 303 (498)
Q Consensus 242 ~s~~g--~~l~~-----g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-----------~dg~i~v 303 (498)
|+|.+ ..|+. .+..+.+++|.+..+..+....-....-..+.|. ..+++|+.-- ....+++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEE
Confidence 99853 34444 3457889999998776655443333344567786 5566554321 1246788
Q ss_pred EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
+++. ...+.......++|...+|.|.++.+++. -++..+.++|++..
T Consensus 260 ~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------------------------- 308 (561)
T COG5354 260 LRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------------------------- 308 (561)
T ss_pred Eeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc--------------------------
Confidence 8875 23333333567899999999998877654 47888999999862
Q ss_pred ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEE-EeccCCCCeeeeEEcC
Q 010883 382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHP 457 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp 457 (498)
+..+-.... . ..+.|||.+++++.++.| |.|.+||....-.+. .+.+. ...-+.|+|
T Consensus 309 ----------l~~~~Pe~~-r------NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp 369 (561)
T COG5354 309 ----------LRFYFPEQK-R------NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP 369 (561)
T ss_pred ----------eEEecCCcc-c------ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence 111111111 1 123678899999997765 789999987665444 56543 345578999
Q ss_pred CCCeEEEEe------CCCcEEEecCCCCCC
Q 010883 458 SQPMLVSSS------WDGDVVRWEFPGNGE 481 (498)
Q Consensus 458 ~~~~l~s~~------~Dg~i~iw~~~~~~~ 481 (498)
|+.++.+.. .|..|.||++.+..-
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CceEEEecCCCcccccCcceEEEEecCchh
Confidence 999877663 378899999987643
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=2.5e-12 Score=125.11 Aligned_cols=233 Identities=21% Similarity=0.231 Sum_probs=150.3
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 229 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
..|.++|...+. ...+. .+...+...+|+|||++|+.++.+ ..|++||+.+++.......
T Consensus 170 ~~l~~~d~~g~~-~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~------------- 232 (417)
T TIGR02800 170 YELQVADYDGAN-PQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF------------- 232 (417)
T ss_pred ceEEEEcCCCCC-CEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-------------
Confidence 358888876442 22222 233368889999999999987754 4799999988765433221
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-eCC--CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CC--eEEE
Q 010883 230 DGGYSFGIFSLKFSTDGRELVAG-SSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 303 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~~g~~l~~g-~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~v 303 (498)
...+.+++|+|||+.|+.. +.+ ..|++||+.+++. ..+..+........|+ ++++.|+..+. ++ .|.+
T Consensus 233 ----~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 233 ----PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred ----CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence 1245668999999977654 333 3599999988754 4444555555677898 67777765554 33 5777
Q ss_pred EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883 304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 380 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
+|+. .+. ...+..+...+..+.|+|++++|+.++.++ .|.+||+.+..
T Consensus 307 ~d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~------------------------ 357 (417)
T TIGR02800 307 MDAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG------------------------ 357 (417)
T ss_pred EECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC------------------------
Confidence 7765 332 334444556677889999999999888775 78888887521
Q ss_pred cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883 381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWH 456 (498)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 456 (498)
...+.... ....+.|+|||++|+..+.++ .+++.+. +++....+..+.+.+..++|+
T Consensus 358 -----------~~~l~~~~-------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 358 -----------ERVLTDTG-------LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred -----------eEEccCCC-------CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 11111110 012457888999888877754 4566664 455556665555666666664
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.3e-13 Score=125.11 Aligned_cols=262 Identities=15% Similarity=0.149 Sum_probs=173.5
Q ss_pred CCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 174 SLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 174 ~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
.+...-+.|..+|||+|++ +|..-..|++||+..-.......+.. ..|.-.-.+.|-..++.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDa----------------e~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDA----------------EVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccc----------------cceeEEEeccchhhheEe
Confidence 4455678899999999876 46668899999998754432221111 134444445555556666
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
..|..|-+..-.......+ -+..-..++++.+...+++.|+ ...|+-+++. .+..+..+....+.++++..+
T Consensus 113 ~~DR~IefHak~G~hy~~R---IP~~GRDm~y~~~scDly~~gs-g~evYRlNLE----qGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRHYRTR---IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLE----QGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred ecCceeeehhhcCeeeeee---cCcCCccccccCCCccEEEeec-CcceEEEEcc----ccccccccccccccceeeeec
Confidence 7777776654322211112 2334567888766666665554 4578888887 888888888788999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883 333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (498)
+-..+|++|+.+|.|.+||.+..+........ ..+....+...... ..+..
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~-------------------------~~v~s~pg~~~~~s----vTal~ 235 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA-------------------------SSVNSHPGGDAAPS----VTALK 235 (703)
T ss_pred CccceEEecccCceEEEecchhhhhheeeecc-------------------------cccCCCccccccCc----ceEEE
Confidence 99999999999999999999985433222110 00000011111111 23345
Q ss_pred cCCCCcEEEEEecCCeEEEEECCCCcEEEEec-cCCCCeeeeEEcCCC--CeEEEEeCCCcEEEecCCCCCCCCCccchh
Q 010883 413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAPPLNKK 489 (498)
Q Consensus 413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~--~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~ 489 (498)
|+.+|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+.+ +.++|. +...++|||-.+++.........
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~ 314 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS 314 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC
Confidence 67689999999999999999999988875543 335689999998763 456665 35689999998887665444333
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-12 Score=126.34 Aligned_cols=234 Identities=21% Similarity=0.187 Sum_probs=146.3
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccCC
Q 010883 154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 230 (498)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (498)
.|.++|.+.... ... ......+....|+|||+.|+..+.+ ..|.+||+.+++...+.....
T Consensus 199 ~l~i~d~dG~~~-~~l---~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------ 262 (448)
T PRK04792 199 QLMIADYDGYNE-QML---LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------ 262 (448)
T ss_pred EEEEEeCCCCCc-eEe---ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence 577778765422 221 1234478899999999999887643 268999998876543322111
Q ss_pred CCceecEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCC--eEEEE
Q 010883 231 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 304 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~-g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg--~i~vw 304 (498)
.....+|+|||+.|+. .+.+| .|+++|+.+++. ..+..+.......+|+ ++++.|+..+ .++ .|.++
T Consensus 263 -----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 263 -----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred -----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 2346799999998875 45555 488889988765 4455565667788998 6677665544 344 45556
Q ss_pred cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
|+. .++. ..+...........|+|||++|+..+.+ + .|.++|+.+..
T Consensus 336 dl~----~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~------------------------- 385 (448)
T PRK04792 336 NLA----SGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA------------------------- 385 (448)
T ss_pred ECC----CCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-------------------------
Confidence 664 3332 2222222233457899999998876553 3 35556665521
Q ss_pred ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-C--eEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883 382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 458 (498)
...+.... ....|.|+|||+.|+..+.+ | .+++++. +|.....+..+.+.+...+|+|-
T Consensus 386 ----------~~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 386 ----------MQVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ----------eEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 11111110 11245788899988876654 3 4778886 56666777766777888999874
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.8e-13 Score=119.00 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=158.2
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEeecCCCceeEEEEEeCCCCCeE-EEEECC--CeEEE
Q 010883 127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHL-VYASMS--PIVHI 202 (498)
Q Consensus 127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l-~~~s~d--~~i~i 202 (498)
+.....+|-.++.. | ..|++|-.+|.+.+|....+..-. ....... ...+..+.-+|...++ ++|+.. ..+.|
T Consensus 101 ~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceee
Confidence 33445566666554 3 357778889999999988442100 1111111 1257777777766555 458888 78999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCe
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDV 279 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v 279 (498)
||++..+.+...+... .+.+.+. -.-.++++.|.+. ...||+++.-+.|++||...+ +++..+.-...++
T Consensus 178 wdle~~~qiw~aKNvp-nD~L~Lr------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVP-NDRLGLR------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI 250 (412)
T ss_pred eecccceeeeeccCCC-Cccccce------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcc
Confidence 9999875433322111 1111111 1226889999987 789999999999999999865 4667777778899
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
+++... ++++++++|..-|.+..||++ .++.... +.+..+.|++|..+|.++++++++-|..|+|+|+.+..
T Consensus 251 s~~~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 251 SSTGLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eeeeec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 999997 889999999999999999998 6666655 88889999999999999999999999999999999843
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=7.1e-12 Score=107.39 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=128.3
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC-ceeccccccccccCccccccCCC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDG 231 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 231 (498)
..|.|||=.....+.... ...+|.++.+.++. |++. ..+.|.||...+. +....+......
T Consensus 75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NP----------- 136 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNP----------- 136 (346)
T ss_pred ceEEEEecccCcEEEEEE----eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCC-----------
Confidence 469999955444444332 33479999997653 4444 4678999998743 332222211101
Q ss_pred CceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCee--eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe-EEEEcCc
Q 010883 232 GYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDRR 307 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-i~vwd~~ 307 (498)
....++.-+.+..+||. |-.-|.|.|-|+...+. ...+.+|.+.|.|++.+ .+|.++|++|..|+ |||||..
T Consensus 137 ---kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 137 ---KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ---CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcC
Confidence 12334433334445554 33469999999987665 46788999999999998 88999999999997 7999998
Q ss_pred cccCCCceeEEeccc--cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 308 CLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 308 ~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
.++.+..+..- ...|.+++|+|+..+|++++..|+|.|+.++...
T Consensus 213 ----~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 ----DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 88888887643 3469999999999999999999999999998744
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.5e-12 Score=123.47 Aligned_cols=234 Identities=20% Similarity=0.246 Sum_probs=148.7
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccCC
Q 010883 154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 230 (498)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (498)
.|.++|.+.+. ..... .+...+....|+|||+.|+..+.+ ..|.+|++.+++...+....
T Consensus 180 ~l~~~d~~g~~-~~~l~---~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLL---QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCCC-ceEEe---cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 47778877543 22221 234478899999999999887654 37999999888664433211
Q ss_pred CCceecEEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCC--eEEEE
Q 010883 231 GGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 304 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~g-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg--~i~vw 304 (498)
+.+....|+|||+.|+.. ..+| .|++||+.+++. ..+..+........|+ ++++.|+..+ .+| .|+++
T Consensus 243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence 134468999999988754 3444 689999988765 3455566666778998 6676665544 344 56667
Q ss_pred cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
|+. .+.. ..+...........|+|||+.|+..+.+ + .|.+||+.+..
T Consensus 317 d~~----~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~------------------------- 366 (430)
T PRK00178 317 NVN----GGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS------------------------- 366 (430)
T ss_pred ECC----CCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC-------------------------
Confidence 765 3332 2222122233457899999999877653 3 47888887632
Q ss_pred ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883 382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 458 (498)
...+.... ....+.|+|||+.++..+.+ ..|+++++. +.....+..+.+.+...+|+|-
T Consensus 367 ----------~~~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 367 ----------VRILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------EEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 11111100 01245788899999887654 357778874 4444556556677888889874
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=7.5e-13 Score=112.52 Aligned_cols=151 Identities=13% Similarity=0.271 Sum_probs=103.9
Q ss_pred eEEEEeCCCCCEEEEeeC----------CCeEEEEcCccccCCCceeEEecc-ccccEEEEEEcCCCCEEEEE--eCCCc
Q 010883 280 NTVCFGDESGHLIYSGSD----------DNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISN--GKDQA 346 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~--~~dg~ 346 (498)
..+.|+ +.|++|+.-.. -|...+|.++. ...+...+.- ..++|.+++|+|+|+.|++. ..++.
T Consensus 9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~---~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE---KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEec---CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 346676 55554443322 13455555542 2233434432 34579999999999987654 46779
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH- 425 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~- 425 (498)
|.+||++. ..+..+..... . ...|||+|++|++++.
T Consensus 85 v~lyd~~~-----------------------------------~~i~~~~~~~~----n----~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 85 VTLYDVKG-----------------------------------KKIFSFGTQPR----N----TISWSPDGRFLVLAGFG 121 (194)
T ss_pred cEEEcCcc-----------------------------------cEeEeecCCCc----e----EEEECCCCCEEEEEEcc
Confidence 99999963 44555543221 1 2367789999999875
Q ss_pred --CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC------CCcEEEecCCCC
Q 010883 426 --DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGN 479 (498)
Q Consensus 426 --dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~------Dg~i~iw~~~~~ 479 (498)
.|.|.+||+.+.+.+.... |. .++.++|+|||++|+++.. |+.++||++.+.
T Consensus 122 n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 122 NLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 4679999999999888875 33 4789999999999998864 788999999765
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1.3e-12 Score=111.13 Aligned_cols=150 Identities=18% Similarity=0.263 Sum_probs=104.9
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE--ECCCeEEE
Q 010883 135 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI 202 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--s~d~~i~i 202 (498)
..+.|+|+|++|+.-.. -+...+|.++........... ...++|.+++|+|+|+.+++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999998775432 234556666332112222222 223469999999999987654 35679999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEeccCCCe
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
||++.... ..+. ...+..+.|+|+|++|++++. .|.|.+||+.+.+.+... .|. .+
T Consensus 88 yd~~~~~i-~~~~------------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~-~~ 146 (194)
T PF08662_consen 88 YDVKGKKI-FSFG------------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHS-DA 146 (194)
T ss_pred EcCcccEe-Eeec------------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccC-cE
Confidence 99963222 1111 126788999999999999874 467999999988887665 333 47
Q ss_pred eEEEEeCCCCCEEEEeeC------CCeEEEEcCc
Q 010883 280 NTVCFGDESGHLIYSGSD------DNLCKVWDRR 307 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~------dg~i~vwd~~ 307 (498)
+.++|+ |+|++|+++.. |+.++||+..
T Consensus 147 t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 147 TDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEc-CCCCEEEEEEeccceeccccEEEEEec
Confidence 899998 88999998874 6888999983
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=7.7e-13 Score=130.05 Aligned_cols=199 Identities=22% Similarity=0.311 Sum_probs=149.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe---eE--EEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV---NT--VCFGDESGHLIYSGSDDNLCKVWDRRCLN 310 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v---~~--~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 310 (498)
.|....+..+...++.++.++.+.+||...+.....+. +...+ .+ +-++ .+.-++++|+.-+.|.+|+..
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~--- 163 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDS-AEELYIASGSVFGEIIVWKPH--- 163 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEecc-CcEEEEEeccccccEEEEecc---
Confidence 44555566677789999999999999998877665553 22211 11 1223 566789999999999999987
Q ss_pred CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883 311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
.......+.+|.+.|..+.++.||+++++.+.|..+++|++.+.....
T Consensus 164 -~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------------- 211 (967)
T KOG0974|consen 164 -EDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------------------------------- 211 (967)
T ss_pred -ccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------------------
Confidence 222233788999999999999999999999999999999999854221
Q ss_pred eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-CCeeeeEEcCCCCeEEEEeCCC
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
.+.-+|+ ..+..+. +.|+ .+++++.|.+.++|+. .++.+..+..|. ..|+.++..++...++|++.||
T Consensus 212 --~~~fgHs--aRvw~~~----~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 212 --CTGFGHS--ARVWACC----FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred --ccccccc--ceeEEEE----eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 1233444 2333443 4335 8999999999999975 455666787776 5699999999999999999999
Q ss_pred cEEEecCCCCCCC
Q 010883 470 DVVRWEFPGNGEA 482 (498)
Q Consensus 470 ~i~iw~~~~~~~~ 482 (498)
.+++|++......
T Consensus 281 ~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 281 TLKLWDLNGRGLE 293 (967)
T ss_pred chhhhhhhccccc
Confidence 9999998766543
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=2.8e-12 Score=126.20 Aligned_cols=201 Identities=18% Similarity=0.221 Sum_probs=158.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC-CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
.+.|....+.-+...++.++.+..+.+||...+....+.....- .-....-+.++++.-++++|+.-+.|.+|+....+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 34444466777778899999999999999987754443321111 01123334567788899999999999999987221
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCCCeeEEEEeCCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES 288 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~ 288 (498)
... ...||.+.|.++.|+.||+++++.+.|.++++|++++.+... ...+|...|..++|. ++
T Consensus 167 ~p~----------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n 229 (967)
T KOG0974|consen 167 KPI----------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN 229 (967)
T ss_pred Ccc----------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc
Confidence 111 223789999999999999999999999999999999988766 566999999999997 44
Q ss_pred CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc-cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
.+++++.|-++++|+. .+..+..+.+|.. .|..++..++...+++++.|+.+++||+...
T Consensus 230 --~i~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred --eeEEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 8999999999999977 4666668888865 5899999999999999999999999998764
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=3.7e-11 Score=112.82 Aligned_cols=286 Identities=16% Similarity=0.197 Sum_probs=171.9
Q ss_pred EEEEECC----CeEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----CCeEEEEECCCC--ceecc
Q 010883 146 FVAGFQA----SQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SPIVHIVDVGSG--TMESL 213 (498)
Q Consensus 146 la~~~~d----g~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----d~~i~iwd~~~~--~~~~~ 213 (498)
+++|+.. +.|.+|++ +++. +...... ........++++|++++|.++.. ++.|..|++... +...+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~-l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGT-LTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTE-EEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCC-ceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 4556555 68999888 4443 3222221 12225677899999999999877 468999888763 44333
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-CeeeEE--Eec-----------cCCC
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLSLR--ILA-----------HTSD 278 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~-~~~~~~--~~~-----------~~~~ 278 (498)
...... ......++++|++++|+++.. +|.|.++++.. +..... ... ....
T Consensus 80 ~~~~~~--------------g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 80 NSVPSG--------------GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp EEEEES--------------SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred eeeccC--------------CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 222210 114567999999999998874 89999999987 433222 111 2345
Q ss_pred eeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC
Q 010883 279 VNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKM 355 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~ 355 (498)
..++.++ |+++++++.. ....|.+|++......-.....+ .........+.|+|+++++++.. .++.|.++++...
T Consensus 146 ~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 146 PHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp EEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 6789997 7777766654 34589999986221111111222 23445688999999999886654 5678999988732
Q ss_pred CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEEC
Q 010883 356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDL 434 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~ 434 (498)
...... .+.+..+....... .......++|||++|+++.. .+.|.+|++
T Consensus 225 ~g~~~~---------------------------~~~~~~~~~~~~~~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 225 DGSLTE---------------------------IQTISTLPEGFTGE---NAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TTEEEE---------------------------EEEEESCETTSCSS---SSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CCceeE---------------------------EEEeeecccccccc---CCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 110000 00111110000000 01122357789999998775 678999998
Q ss_pred C--CCc--EEEEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCC
Q 010883 435 V--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 478 (498)
Q Consensus 435 ~--~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~ 478 (498)
. +++ .+..+.......+.++++|+|++|+++. .++.|.+|+++.
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 3 333 3444444445589999999999888776 667899998853
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.6e-12 Score=116.24 Aligned_cols=285 Identities=15% Similarity=0.178 Sum_probs=173.6
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-----------CCeE
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----------SPIV 200 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-----------d~~i 200 (498)
-.-+-+.|||-|.||++-...| |.+|--.+-..+++. .|. .|.-+.|||..+||++-+. ...+
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 3446789999999999998776 889976553333332 344 5899999999999998653 2479
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 280 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 280 (498)
.|||+.+|.....+........ .-.-..||.|++++|.-..+ +|.||+..+-.++-.-.-.-..|.
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~-------------~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr 350 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYL-------------KWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIR 350 (698)
T ss_pred EEEEccccchhcceeccCCCcc-------------ccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCcccc
Confidence 9999999988776655321100 12236899999999887765 588988766433222222234455
Q ss_pred EEEEeCCCCCEEEEeeCC----------------C-----------------------------------------eEEE
Q 010883 281 TVCFGDESGHLIYSGSDD----------------N-----------------------------------------LCKV 303 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~d----------------g-----------------------------------------~i~v 303 (498)
...|+ |.+++||-=... . .+-|
T Consensus 351 ~Fsws-P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 351 DFSWS-PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred CcccC-CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence 55665 334444321110 0 1111
Q ss_pred EcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcC
Q 010883 304 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 380 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (498)
+.++. ..-++.. ......|...+|-|.|..+++-+.. .++.+|.+.+.....
T Consensus 430 frire---KdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~--------------------- 484 (698)
T KOG2314|consen 430 FRIRE---KDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP--------------------- 484 (698)
T ss_pred EEeec---cCCCcee-eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch---------------------
Confidence 11110 0011111 1234667788999999888765543 468888877422111
Q ss_pred cccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe---cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883 381 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 457 (498)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 457 (498)
..+..+... .+....|+|.|++++.+. ..|.+.++|+.-..+...-.......+.+.|.|
T Consensus 485 ---------~lVk~~dk~--------~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP 547 (698)
T KOG2314|consen 485 ---------SLVKELDKK--------FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP 547 (698)
T ss_pred ---------hhhhhhccc--------ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC
Confidence 122222221 112335677899988764 478999999874333222212223467899999
Q ss_pred CCCeEEEEeC------CCcEEEecCCCC
Q 010883 458 SQPMLVSSSW------DGDVVRWEFPGN 479 (498)
Q Consensus 458 ~~~~l~s~~~------Dg~i~iw~~~~~ 479 (498)
.|++++|++. |.--++|++.+.
T Consensus 548 tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 548 TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCCEEEEeeehhhhccccceEEEEeecH
Confidence 9999999875 455678888765
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=5.4e-13 Score=115.26 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=152.6
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
-.....+++++.++++...|+.|-..|++.-+.+... ++.........|...|..+-|+-...++++.+.|..+.---.
T Consensus 64 ~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 64 YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence 3556788999999999999999999999999887653 122222334567789999999999999999999887654444
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeEEEeccCCCeeEEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~ 283 (498)
+.+........... .+++.+.-. +...|...|.|.+..+ ..-.++.++.+|.+.+.+++
T Consensus 144 e~~~~lg~Y~~~~~-----------------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~ 204 (404)
T KOG1409|consen 144 ESGNRLGGYNFETP-----------------ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK 204 (404)
T ss_pred ccCCcccceEeecc-----------------CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence 44443322222211 111111111 4455656666665544 44556788889999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
|. +...+|++|..|..+.+||+- ........+.+|...|..+..-+--+.+++++.||.|.+|+.+...
T Consensus 205 Wd-~~~~~LfSg~~d~~vi~wdig---g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 205 WD-PGQRLLFSGASDHSVIMWDIG---GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred Ec-CCCcEEEeccccCceEEEecc---CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 96 788899999999999999996 2334566788899999999888888899999999999999998744
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.4e-10 Score=106.39 Aligned_cols=283 Identities=18% Similarity=0.227 Sum_probs=166.2
Q ss_pred ceEEEEEcCCCCEEEEEEC----CCeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECC
Q 010883 133 RAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVG 206 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~----dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~ 206 (498)
...-++++|++++|.+... ++.|..|.+... ..+...............++++|++++|+++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3456789999999999877 468999988764 233332222212335678999999999999885 8899999998
Q ss_pred C-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe--eeE--EEe-ccCCCe
Q 010883 207 S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK--LSL--RIL-AHTSDV 279 (498)
Q Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~--~~~--~~~-~~~~~v 279 (498)
. +.......... +.+. .+...........++.|+|+|+++++... ...|++|++.... +.. .+. ......
T Consensus 118 ~~g~l~~~~~~~~-~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 118 DDGSLGEVVQTVR-HEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp TTSEEEEEEEEEE-SEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred CCcccceeeeecc-cCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 7 44333322110 0000 00001111225788999999998887653 4579999997765 321 222 344667
Q ss_pred eEEEEeCCCCCEEE-EeeCCCeEEEEcCccccCCCceeEEeccc------cccEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 010883 280 NTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNG-KDQAIKLWD 351 (498)
Q Consensus 280 ~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd 351 (498)
+.+.|+ +++++++ +...++.|.++++.........+...... ......|.++|||++|+++. ..+.|.+|+
T Consensus 195 Rh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 195 RHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 899998 5666665 44567889999886221111222222111 12578899999999987765 456799999
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEE
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVY 430 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~ 430 (498)
+....... ..+..+.... . ......++|+|++|+++.. ++.|.
T Consensus 274 ~d~~~g~l------------------------------~~~~~~~~~G--~----~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 274 LDPATGTL------------------------------TLVQTVPTGG--K----FPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ECTTTTTE------------------------------EEEEEEEESS--S----SEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EecCCCce------------------------------EEEEEEeCCC--C----CccEEEEeCCCCEEEEEecCCCeEE
Confidence 95421100 1111111100 0 0123366789999998875 57899
Q ss_pred EEEC--CCCcEEEEec-cCCCCeeeeEE
Q 010883 431 VYDL--VSGEQVAALK-YHTSPVRDCSW 455 (498)
Q Consensus 431 iwd~--~~~~~~~~~~-~h~~~v~~l~~ 455 (498)
+|++ .+|.+...-. ..-....|+.|
T Consensus 318 vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 318 VFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9876 4666543332 12334556655
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.6e-11 Score=119.54 Aligned_cols=193 Identities=21% Similarity=0.152 Sum_probs=126.8
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCC--eEEEEcCccc
Q 010883 236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL 309 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg--~i~vwd~~~~ 309 (498)
.+.+.+|+|||++|+.+... ..|++||+.+++.. .+..+...+.+++|+ ++++.|+ +.+.++ .|++||+.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~-- 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD-- 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC--
Confidence 57888999999999987654 47999999987653 344556667789998 6666554 555554 58888875
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
.+ ....+..+........|+|||+.|+..+. ++ .|.++|+....
T Consensus 267 --~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 267 --GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 33 33444445455557789999998876654 33 47777765421
Q ss_pred CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883 387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 463 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 463 (498)
...+..+. .....+.|+|+|++|+.++.++ .|++||+.++... .+... .......|+|++++|+
T Consensus 314 -----~~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 314 -----VRRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred -----EEEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 11111111 1123457888999999988776 8999999886543 33222 2345678999999887
Q ss_pred EEeCCC---cEEEecCCC
Q 010883 464 SSSWDG---DVVRWEFPG 478 (498)
Q Consensus 464 s~~~Dg---~i~iw~~~~ 478 (498)
.++.++ .+.+.+...
T Consensus 381 ~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEeCCCcEEEEEEECCC
Confidence 776654 355555444
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1.2e-11 Score=114.82 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=156.7
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC------C--------------CCCeEEEEECCCe
Q 010883 140 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS------P--------------DQRHLVYASMSPI 199 (498)
Q Consensus 140 s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s------p--------------~~~~l~~~s~d~~ 199 (498)
.|-+.++|....||.+++|+..++.....+.......+.-++..|. | |...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999999986655554444444455555552 2 2346777888999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
|.+|++..++....... ++|.+.|.++.++.+-..|.+++.|+.+..|+....+..+........+
T Consensus 82 v~~ys~~~g~it~~~st--------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLST--------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEec--------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 99999999887655442 2577799999999999999999999999999999999999998889999
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-----CCEEEEE-eCCCcEEEEeCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GRYLISN-GKDQAIKLWDIR 353 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~s~-~~dg~i~iwd~~ 353 (498)
.+++++ +++..+++++ +.|++||+. ..+.+..+.+|.++|.+++|.-+ |.+++++ ..+..+.+|-++
T Consensus 148 ~sl~is-~D~~~l~~as--~~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCIS-PDGKILLTAS--RQIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEc-CCCCEEEecc--ceEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999998 7788998887 589999998 89999999999999999999876 6666654 445568888776
Q ss_pred C
Q 010883 354 K 354 (498)
Q Consensus 354 ~ 354 (498)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=1.9e-12 Score=111.96 Aligned_cols=276 Identities=15% Similarity=0.229 Sum_probs=171.9
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc--cCccccccCCCCceecEEEEEEcCCCC--EEEEEe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGS 253 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~~g~--~l~~g~ 253 (498)
-|.++.|...|.+|++|..+|.|.++.-...... ........ ...+|..-..-.....|..+.|.+++. .++..+
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5889999999999999999999999975432210 11111000 000111000011223688999998664 677778
Q ss_pred CCCeEEEEECCCCeee-----------------------------------EEE-eccCCCeeEEEEeCCCCCEEEEeeC
Q 010883 254 SDDCIYVYDLEANKLS-----------------------------------LRI-LAHTSDVNTVCFGDESGHLIYSGSD 297 (498)
Q Consensus 254 ~dg~i~vwd~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~~l~s~s~ 297 (498)
.|.+|++|.+...... +.+ .+|...|+++.++ .+.+.++++ .
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lSA-D 183 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLSA-D 183 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEeec-c
Confidence 8999999987532110 000 1588889999998 777777665 5
Q ss_pred CCeEEEEcCccccCCCceeEE----eccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883 298 DNLCKVWDRRCLNVKGKPAGV----LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 372 (498)
Q Consensus 298 dg~i~vwd~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 372 (498)
|=.|.+|.+...+.....+-. +.....-|++..|+|. .+.++-.+..|+|++-|+|....-...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h----------- 252 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH----------- 252 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch-----------
Confidence 789999998744322222211 1223456888999995 567888889999999999953211000
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC-CCcEEEEeccCC----
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHT---- 447 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~---- 447 (498)
...+..+.+..- .+....+++......||++|+|+++-.. -+|++||+. ..+++.+++.|.
T Consensus 253 --------sKlfEepedp~~-----rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 253 --------SKLFEEPEDPSS-----RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred --------hhhhccccCCcc-----hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence 000000000000 0111112222334467889999998765 469999994 456777766553
Q ss_pred --------CCe---eeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 448 --------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 448 --------~~v---~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
..| ..++|+-++.+++||+....+++++...+..
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 223 4579999999999999999999999665543
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.3e-11 Score=114.58 Aligned_cols=242 Identities=12% Similarity=0.101 Sum_probs=144.2
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe--EEEEEC-C--CeEEEEECCCCceeccccccccccCccccc
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSA 227 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~s~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (498)
+.|.+.|.+.+.. ..+. .....+..-+|+|||+. ++..+. + ..|.+.++.+++...+.....
T Consensus 165 ~~l~~~d~dG~~~-~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------- 231 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------- 231 (428)
T ss_pred ceEEEEcCCCCCc-eEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence 3677777765532 2221 12335677899999975 322333 3 368888998876544433221
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEeC-CC--eE--EEEECCCC--eeeEEEec-cCCCeeEEEEeCCCCCEEEEee-CC
Q 010883 228 ADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CI--YVYDLEAN--KLSLRILA-HTSDVNTVCFGDESGHLIYSGS-DD 298 (498)
Q Consensus 228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg--~i--~vwd~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s-~d 298 (498)
.....+|+|||+.|+..+. +| .+ .+|++..+ .....+.. +.......+|+ |+++.|+..+ .+
T Consensus 232 --------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~ 302 (428)
T PRK01029 232 --------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKD 302 (428)
T ss_pred --------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCC
Confidence 3446799999998887653 22 33 44677653 12233332 23345678998 7777666554 56
Q ss_pred CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceee
Q 010883 299 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 375 (498)
Q Consensus 299 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 375 (498)
|...+|.+.... .+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+...
T Consensus 303 g~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------------ 363 (428)
T PRK01029 303 GRPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------------ 363 (428)
T ss_pred CCceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------------
Confidence 765565442110 122234444455567788999999998876543 3689999876321
Q ss_pred cCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCCcEEEEeccCCCCeee
Q 010883 376 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRD 452 (498)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~ 452 (498)
..+.... .....+.|+|||+.|+.... ...|+++|+..++...... ..+.+..
T Consensus 364 -----------------~~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~ 419 (428)
T PRK01029 364 -----------------YQLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRF 419 (428)
T ss_pred -----------------EEccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccC
Confidence 1111110 01134578889998876543 3579999998877544433 4556778
Q ss_pred eEEcCCC
Q 010883 453 CSWHPSQ 459 (498)
Q Consensus 453 l~~sp~~ 459 (498)
.+|+|-.
T Consensus 420 p~Ws~~~ 426 (428)
T PRK01029 420 PSWGAFP 426 (428)
T ss_pred ceecCCC
Confidence 8998754
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=8.5e-10 Score=100.99 Aligned_cols=278 Identities=14% Similarity=0.093 Sum_probs=167.8
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----------CCeEEEEECCCCceeccccccccccC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----------d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
++|.|.|..+++.+......... ..+ ++||++.|.++.. +..|.+||..+.+......+....+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P----~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP----NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC----cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 88999999998666655433322 224 8999998887765 67999999999988766654432110
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 300 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~ 300 (498)
. .......++++|||++|++.. . +..|.+.|+.+++.+..+.-- +...-+..+ +...+ +-+.||.
T Consensus 102 ~---------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~-e~~~~--~~~~Dg~ 168 (352)
T TIGR02658 102 L---------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTA-NDTFF--MHCRDGS 168 (352)
T ss_pred h---------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEec-CCccE--EEeecCc
Confidence 0 011344689999999998776 3 689999999999998887642 221222221 22222 3334555
Q ss_pred EEEEcCccccCCCce-eE---EeccccccEE-EEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883 301 CKVWDRRCLNVKGKP-AG---VLMGHLEGIT-FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 374 (498)
Q Consensus 301 i~vwd~~~~~~~~~~-~~---~~~~~~~~v~-~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 374 (498)
.....+.. .++. .. .+.....++. .-.+.+ +|+++.+... |.|.+.|+........
T Consensus 169 ~~~v~~d~---~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-------------- 230 (352)
T TIGR02658 169 LAKVGYGT---KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-------------- 230 (352)
T ss_pred eEEEEecC---CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec--------------
Confidence 54443331 1111 00 1111000000 003344 7887776666 9999999765321110
Q ss_pred ecCCcCcccccCCCCceEEEEccCc---eeEEEEEEEeccccCCCCcEEEEEec----------CCeEEEEECCCCcEEE
Q 010883 375 MDYPPQARDLKHPCDQSVATYKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVA 441 (498)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~ 441 (498)
..+..+.... ..... . .--.+++++++.+++... .+.|.++|..+++.+.
T Consensus 231 ---------------~~~~~~~~~~~~~~wrP~-g-~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 231 ---------------PAIEAFTEAEKADGWRPG-G-WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred ---------------ceeeeccccccccccCCC-c-ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 1111110000 00000 0 000356778888887532 2579999999999999
Q ss_pred EeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCCCC
Q 010883 442 ALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~~~ 484 (498)
.+.. ...+..++++||++ +|++.. .++.|.+.|..+.+....
T Consensus 294 ~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 294 KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 8873 45789999999999 777666 678899999988765443
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.4e-11 Score=114.31 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=108.9
Q ss_pred CCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE------cC--------------
Q 010883 185 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF------ST-------------- 244 (498)
Q Consensus 185 sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~------s~-------------- 244 (498)
.|...++|....||.+++|+...++....+.....-.+ ..++..| +|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~-------------t~~~~~w~L~~~~s~~k~~~~~~~~~~s~ 68 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG-------------TCTYTKWGLSADYSPMKWLSLEKAKKASL 68 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccC-------------cceeEEEEEEeccchHHHHhHHHHhhccC
Confidence 34567899999999999999998877555443322111 2223322 22
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883 245 DGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 322 (498)
Q Consensus 245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 322 (498)
|-..++-|...|.|.+|++..++....+. .|.+.|+++.++ .+-..|.+++.|+.+..|+.. ....++.+...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~ 143 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQ 143 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecc----cceeeeeeccC
Confidence 33467888899999999999999888876 699999999997 777899999999999999987 66666666666
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 323 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 323 ~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
...+.+++.+||+..+++++ ++|++||+.+
T Consensus 144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ 173 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS--RQIKVLDIET 173 (541)
T ss_pred CCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence 66666777777666666554 2355555444
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=8.5e-11 Score=114.08 Aligned_cols=194 Identities=18% Similarity=0.166 Sum_probs=121.6
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCe--EEEEcCccc
Q 010883 236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCL 309 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~ 309 (498)
.+.+..|+|||+.|+..+.+ ..|++||+.+++.. .+....+......|+ ++++.|+ +.+.+|. |+++|+.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~-- 294 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIA-- 294 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECC--
Confidence 67889999999998876543 36999999887653 333333444578998 6676554 5566775 6777775
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
.+ ....+..+........|+|||+.|+..+. ++ .|.++|+.+...
T Consensus 295 --tg-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----------------------------- 342 (448)
T PRK04792 295 --TK-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----------------------------- 342 (448)
T ss_pred --CC-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------------------------
Confidence 33 34445555556678899999998876553 34 466666654210
Q ss_pred CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-C--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883 387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 463 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 463 (498)
..+ ++.+.. ...+.|+|||++|+..+.+ + .|.++|+.+++.. .+... .......|+|||+.|+
T Consensus 343 ---~~L-t~~g~~--------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 343 ---SRL-TFEGEQ--------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred ---EEE-ecCCCC--------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 001 111111 1245788899998876653 3 5677888887653 33322 1233568999999776
Q ss_pred EEeC-CCc--EEEecCCCC
Q 010883 464 SSSW-DGD--VVRWEFPGN 479 (498)
Q Consensus 464 s~~~-Dg~--i~iw~~~~~ 479 (498)
..+. +|. +.+++.++.
T Consensus 409 ~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 6554 443 666776544
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.2e-10 Score=113.42 Aligned_cols=195 Identities=21% Similarity=0.180 Sum_probs=125.6
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCC--eEEEEcCccc
Q 010883 236 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL 309 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg--~i~vwd~~~~ 309 (498)
.+....|+|||+.|+..+.+ ..|++||+.+++.. .+....+.+....|+ |+++.|+ +.+.+| .|++||+.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~-- 275 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLA-- 275 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEECC--
Confidence 68899999999999877643 46999999888653 343444555678998 6676665 555555 58888886
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
.+ ....+..+........|+|||+.|+..+. ++ .|+++|+.+...
T Consensus 276 --~~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----------------------------- 323 (430)
T PRK00178 276 --SR-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----------------------------- 323 (430)
T ss_pred --CC-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------------------------
Confidence 33 33445555556667889999998876653 33 466677655221
Q ss_pred CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-C--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883 387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 463 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 463 (498)
..+ .+.+. ....+.|+|||++|+..+.+ + .|++||+.+++... +. +........|+|||++|+
T Consensus 324 ---~~l-t~~~~--------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 324 ---ERV-TFVGN--------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLI 389 (430)
T ss_pred ---EEe-ecCCC--------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEE
Confidence 000 11111 11235688899999887653 3 58899998876533 32 222334568999999887
Q ss_pred EEeCC-C--cEEEecCCCCC
Q 010883 464 SSSWD-G--DVVRWEFPGNG 480 (498)
Q Consensus 464 s~~~D-g--~i~iw~~~~~~ 480 (498)
.++.+ | .|.++++.+..
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EEEecCCceEEEEEECCCCc
Confidence 66543 3 46667775443
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.8e-12 Score=133.67 Aligned_cols=221 Identities=17% Similarity=0.197 Sum_probs=166.5
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
..|.++.=+|...+.++|+.||.|++|....++.+..+.... . ..|+.+.|+.+|+.+..+..||
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------------~-s~vtr~~f~~qGnk~~i~d~dg 2273 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------------N-SRVTRSRFNHQGNKFGIVDGDG 2273 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------------c-chhhhhhhcccCCceeeeccCC
Confidence 368888888999999999999999999998887665554332 1 4799999999999999999999
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
.+.+|.+. .++......|......+.|. . ..+++++ .++.+.+||.... +..-..-..|.+.++++++-|
T Consensus 2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi-~--s~~~tag~s~d~~n~~lwDtl~~---~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFI-G--SLLATAGRSSDNRNVCLWDTLLP---PMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred ceeecccC-CcceeccccCCccccceeee-e--hhhhccccCCCCCcccchhcccC---cccceeeeecCCCceEEEEcC
Confidence 99999987 66777778899999999997 2 5666664 4689999997522 222222378999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
..+.|++|+.+|.|++||++.. +.++++.. +
T Consensus 2347 ~~qllisggr~G~v~l~D~rqr----------------------------------ql~h~~~~---------------~ 2377 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQR----------------------------------QLRHTFQA---------------L 2377 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHH----------------------------------HHHHHhhh---------------h
Confidence 9999999999999999999873 23333332 1
Q ss_pred CCCCcEEEEEecCCeEEEEECCCCcEEEEecc---CCCC--e--eeeEEcCCCCeEEEEeCCCc
Q 010883 414 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSP--V--RDCSWHPSQPMLVSSSWDGD 470 (498)
Q Consensus 414 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~--v--~~l~~sp~~~~l~s~~~Dg~ 470 (498)
. ...++++|+..|.++||++..-..+..+.. |.+- . ..+... ....|.+|+.||+
T Consensus 2378 ~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2378 D-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred h-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 1 356899999999999999988877776652 2211 0 112222 2346777777764
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=5.1e-11 Score=112.72 Aligned_cols=287 Identities=11% Similarity=0.108 Sum_probs=192.3
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------------EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 198 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~ 198 (498)
.....|++|+....++|+|+.||.++|..+.+.. .+.......+|...|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4567899999999999999999999999886531 1111234568999999999999999999999999
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCC
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTS 277 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~ 277 (498)
.|.+|-+-.+......... ....-|.+++|+.||..+.....||.|.|=.+..++... .+.+ .
T Consensus 94 lIiVWmlykgsW~EEMiNn--------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~ 157 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINN--------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--Q 157 (1189)
T ss_pred eEEEEeeecccHHHHHhhC--------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--h
Confidence 9999998877653221111 123369999999999999999999999887776554321 1111 2
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc---CCCceeE----EeccccccEEEEEEc--------CCCCEEEEEe
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---VKGKPAG----VLMGHLEGITFIDSR--------GDGRYLISNG 342 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~----~~~~~~~~v~~l~~~--------~~~~~l~s~~ 342 (498)
....+.|+ ++.+.++.+-..|.+.+||....- ....+.. .+......|..+.|. ||...|+++.
T Consensus 158 ~l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 23468898 777788888889999999974110 0000100 111112224455553 5778899999
Q ss_pred CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
.+|.+.|..-.+... ++..-.+ -.+ ....|+++|..|++
T Consensus 237 ~nGr~QiMR~eND~~---------------------------------Pvv~dtg----m~~----vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPE---------------------------------PVVVDTG----MKI----VGAKWNHNGAVLAV 275 (1189)
T ss_pred cCceehhhhhcCCCC---------------------------------CeEEecc----cEe----ecceecCCCcEEEE
Confidence 999888765444211 1111111 011 22357779999999
Q ss_pred EecC---------CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 423 GSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 423 g~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
++.+ +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+ .|+.|++=++.
T Consensus 276 cG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 276 CGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred ccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 8764 2566665 3578888888888899999997666555544 35665554443
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=2.5e-12 Score=121.77 Aligned_cols=302 Identities=17% Similarity=0.247 Sum_probs=193.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC--CeEEEEECCCeEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~s~d~~i~iwd~~~~ 208 (498)
..++.++.++|.|+-+|.++.-| +.+-|+......... ..+...+.|-.+.|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 56788899999999999998877 556777664222222 223345678888999854 34444445556678988643
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee-eEEEeccCCCeeEEEEeC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~ 286 (498)
....+.-. ..||+..|+.+.|+|+.. .+++++.|..+..||+++... +.....-......++|+-
T Consensus 102 s~~aIef~-------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 102 SSNAIEFV-------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CccceEEE-------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 32221111 127888999999999654 788899999999999988653 333334445668899986
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGF 365 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 365 (498)
.+++.++ .+....|++||++ ....++..+++|...|+.++|..- ...+.+.+.|++|+.||..+...........
T Consensus 169 k~p~vla-sshg~~i~vwd~r---~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 169 KDPNVLA-SSHGNDIFVWDLR---KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred cCcchhh-hccCCceEEEecc---CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 6666664 4566789999998 345678888899999999998652 3468899999999999998744322221111
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC-CcEEEEec
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALK 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~ 444 (498)
....|..+.+++.. +..+. +...+..+..---+.....|+..+ .++++++.
T Consensus 245 ~~piw~~r~~Pfg~---------g~~~m-------------------p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~ 296 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGE---------GYCIM-------------------PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV 296 (1081)
T ss_pred cCcceeccccccCc---------eeEec-------------------cccCCeeeeeccccchhhhhccccCCcceeeec
Confidence 11122111111100 00000 000111111111122233444444 36789999
Q ss_pred cCCCCeeeeEEcCC--------CC--eEEEEeCCCcEEEecCCCC
Q 010883 445 YHTSPVRDCSWHPS--------QP--MLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 445 ~h~~~v~~l~~sp~--------~~--~l~s~~~Dg~i~iw~~~~~ 479 (498)
+|.+.|...-|-.. .+ .|+|-+.|..+++|-+...
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 99999888777542 22 7999999999999998754
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=5.4e-11 Score=100.97 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=143.3
Q ss_pred CCceEEEEEcC---CCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 131 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 131 ~~~v~~~~~s~---dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
.+.++.+.|.- +|. .|+-+-.+|.|.+|..........+.......- ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 45566666654 444 566677789999998765533333322222221 24577899999999999999999866
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeeeEE-EeccCCCee
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE-ANKLSLR-ILAHTSDVN 280 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~ 280 (498)
+............ .+|..++..+.|+. +.+.+.+|+.|+.+..||++ .++.+.. ...|...|.
T Consensus 149 ~~t~~~le~vq~w--------------k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~ 214 (339)
T KOG0280|consen 149 YETEMVLEKVQTW--------------KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV 214 (339)
T ss_pred ecceeeeeecccc--------------cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence 6555444332222 25777899999986 44688999999999999998 3344433 457899999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC
Q 010883 281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~ 355 (498)
+|.-+|+.+.++++|+.|-.|++||.|.. ++++..-. -.++|..+.++|.-. .++.+++-.-.+|-+....
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm---~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRNM---GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhcc---cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 99999999999999999999999999833 33333222 348899999998532 2334444444777777653
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.7e-09 Score=95.19 Aligned_cols=279 Identities=16% Similarity=0.198 Sum_probs=175.7
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---CeEEEEECCC--CceeccccccccccCcccc
Q 010883 152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGS--GTMESLANVTEIHDGLDFS 226 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~ 226 (498)
+.-|.+|++++...-......-.....++-++|+|+++.|.++..+ |.|..|.++. |+...+-.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------- 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------- 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-------
Confidence 4569999998532222222333445578999999999999887654 6677777764 554333222211
Q ss_pred ccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Ceee--EEEeccCCC----------eeEEEEeCCCCCEE
Q 010883 227 AADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLS--LRILAHTSD----------VNTVCFGDESGHLI 292 (498)
Q Consensus 227 ~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~~l 292 (498)
..+...++++++|++++++.. .|.|.++-+.. |.+. .....|.+. +....+. |++++|
T Consensus 88 -------g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l 159 (346)
T COG2706 88 -------GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYL 159 (346)
T ss_pred -------CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEE
Confidence 113478999999999998875 57899998865 3322 122345544 7788886 788888
Q ss_pred EEeeC-CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccc
Q 010883 293 YSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 293 ~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
++.+- .-.|.+|++............+ ....+...|.|+|++++....+ -+++|-+|...........
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~--------- 229 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE--------- 229 (346)
T ss_pred EEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE---------
Confidence 77653 3478999997332222222222 3445678999999999887655 4889999998874111000
Q ss_pred cceeecCCcCcccccCCCCceEEE----EccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCC--CcE--EE
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVAT----YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS--GEQ--VA 441 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~--~~~--~~ 441 (498)
-+.+.+ |.+.. .. -...+++||++|+++.. ...|.+|.+.. +++ +.
T Consensus 230 ------------------lQ~i~tlP~dF~g~~---~~----aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~ 284 (346)
T COG2706 230 ------------------LQTIDTLPEDFTGTN---WA----AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG 284 (346)
T ss_pred ------------------eeeeccCccccCCCC---ce----eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence 011111 11111 11 12246779999999865 34788887754 332 22
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCC-CcEEEecCCCCC
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPGNG 480 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~D-g~i~iw~~~~~~ 480 (498)
....+...-++..++|.+++|+.+..| ..|.+|..+...
T Consensus 285 ~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 285 ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 223444557899999999998888754 468888876543
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=2.3e-11 Score=103.96 Aligned_cols=269 Identities=17% Similarity=0.259 Sum_probs=171.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCC------------ceeEEEEEeCCCC--CeEEEE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSL------------RWTVTDTSLSPDQ--RHLVYA 194 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~------------~~~v~~~~~sp~~--~~l~~~ 194 (498)
...|+++.|...|.||++|...|.|.+|.-+... ...-....++| ...|..+.|-.++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999865432 01111112222 2368888887654 356667
Q ss_pred ECCCeEEEEECCCCceeccccccccccCccc--------------------------ccc--CCCCceecEEEEEEcCCC
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDF--------------------------SAA--DDGGYSFGIFSLKFSTDG 246 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--------------------------~~~--~~~~h~~~i~~~~~s~~g 246 (498)
+.|.+|++|.+.......+.. ....++..+ .+. ....|...|.++.|+.|.
T Consensus 106 tNdktiKlWKiyeknlk~va~-nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAE-NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhc-cccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 789999999986553211111 000000000 000 124688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeee---EEEeccC-----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc----
Q 010883 247 RELVAGSSDDCIYVYDLEANKLS---LRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---- 314 (498)
Q Consensus 247 ~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~-----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---- 314 (498)
..++++. |=.|.+|+++-.... ..+..|. .-|++..|+|...+.+.-.+..|.|++-|+|....-..
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8888764 667999988754322 2233343 45788999988888888899999999999982211011
Q ss_pred --------eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 315 --------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 315 --------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
...-+.+-...|..+.|+++|++|++-.. -+|+|||++....
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~----------------------------- 313 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN----------------------------- 313 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC-----------------------------
Confidence 11112233456788999999999987654 4799999987442
Q ss_pred CCCceEEEEccCcee---------EEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 387 PCDQSVATYKGHSVL---------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
++.+..-|... ...+--.|...||.|.+.+++|+..+..-+|-+.
T Consensus 314 ----pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 314 ----PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ----CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 23333222110 1112223445677788888888888777777643
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.8e-10 Score=110.98 Aligned_cols=209 Identities=16% Similarity=0.124 Sum_probs=127.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEE---EEECCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-C
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFV---AGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-S 197 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la---~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d 197 (498)
+..+......+..-+|||||+.++ +...+| .|.+.++.++.... +... .+.....+|+|||+.|+..+. +
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~---~g~~~~p~wSPDG~~Laf~s~~~ 252 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILAL---QGNQLMPTFSPRKKLLAFISDRY 252 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecC---CCCccceEECCCCCEEEEEECCC
Confidence 344555667778889999997532 333343 58888888774322 2222 224556899999999987663 2
Q ss_pred C----eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-Ceee
Q 010883 198 P----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-NKLS 269 (498)
Q Consensus 198 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~--i~vwd~~~-~~~~ 269 (498)
| .+.+|++..+.......+... +.......+|+|||+.|+..+ .+|. |+++++.. +...
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~-------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNE-------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecC-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 2 344567665321111111100 001234679999999888766 3554 55555542 2334
Q ss_pred EEEeccCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC---
Q 010883 270 LRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--- 343 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--- 343 (498)
..+..+...+....|+ |+++.|+..+.+ ..|.+||+. .++. ..+......+....|+|||+.|+....
T Consensus 320 ~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 320 RLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred EEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCe-EEccCCCCCccceEECCCCCEEEEEECCCC
Confidence 4555555677889998 778877765543 368999986 3333 334333345677899999998875443
Q ss_pred CCcEEEEeCCCC
Q 010883 344 DQAIKLWDIRKM 355 (498)
Q Consensus 344 dg~i~iwd~~~~ 355 (498)
...|.++|+...
T Consensus 394 ~~~L~~vdl~~g 405 (428)
T PRK01029 394 ESELYLISLITK 405 (428)
T ss_pred CceEEEEECCCC
Confidence 346888888763
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=6.6e-12 Score=129.67 Aligned_cols=193 Identities=11% Similarity=0.187 Sum_probs=148.0
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
..+-..|.++.=+|.-.+.+||+.||.|++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCC
Confidence 44566788888899999999999999999999988866655443332 6899999999999999999999999999872
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCe-eeEEEeccCCCeeEEE
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEANK-LSLRILAHTSDVNTVC 283 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~---~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~ 283 (498)
.-.. . ...|.....+++|.. ..+++++ .++.+.+||..-.. .-..-..|.+.+++++
T Consensus 2283 k~~~---s--------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2283 KPYT---S--------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred ccee---c--------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 1111 0 113555677777765 4566654 46889999964321 1112268999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
+. |..++|++|+.+|.|++||++ ..+..+.++. +. ...+|++++..|.++||++....
T Consensus 2344 ~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2344 YA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred Ec-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence 98 788999999999999999998 6555555543 34 55789999999999999998754
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.34 E-value=3.3e-09 Score=96.12 Aligned_cols=175 Identities=18% Similarity=0.151 Sum_probs=133.4
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-eEEEEECCCCceeccccc
Q 010883 139 FSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANV 216 (498)
Q Consensus 139 ~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-~i~iwd~~~~~~~~~~~~ 216 (498)
|++ +|.++|..+. |...|.+...+..++ -++.+.|.-..+.-+++-++.|..|| .+-|+|..+++.......
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence 444 6788888865 567777766663333 24555788888988888999999999 899999999886544332
Q ss_pred cccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee
Q 010883 217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296 (498)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s 296 (498)
-+.|.++..+++|++++++.....|.+.|+.++.....-....+-|+.+.|+ ++++++|-+-
T Consensus 401 -----------------lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYaf 462 (668)
T COG4946 401 -----------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAF 462 (668)
T ss_pred -----------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEec
Confidence 1269999999999999999999999999999998765555677889999998 8899999877
Q ss_pred CCC----eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883 297 DDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 297 ~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~ 342 (498)
-+| .|+++|+. .++ +.........-.+-+|.||+++|.--+
T Consensus 463 P~gy~tq~Iklydm~----~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMD----GGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecC----CCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 665 68999995 333 333333444445678999999887554
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.34 E-value=6.4e-09 Score=108.34 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=189.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEE----ECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw----~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
...+.|.++.|-+|...++.+..+|.|.+. +..+. .+... ......|.+++||||+..|+.++.++++.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 446789999999999999999999999999 55443 12211 22334799999999999999999998887764
Q ss_pred CCCCceeccccccccc-------------cCccccc----------------cCCCC---ceecEEEEEEcCCCCEEEEE
Q 010883 205 VGSGTMESLANVTEIH-------------DGLDFSA----------------ADDGG---YSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~-------------~~~~~~~----------------~~~~~---h~~~i~~~~~s~~g~~l~~g 252 (498)
.. -.......+.... ...+|.. ..+.+ +...-..++|-.||.++|+.
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 21 1111110000000 0000000 00001 33456779999999999988
Q ss_pred eC---C---CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCccccCCCceeEEecccc
Q 010883 253 SS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 253 ~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
+. . ..|+||+-+ |.+...-..-.+--.+++|. |.|++|++... ...|.+|..+... .+.....+....
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCC
Confidence 74 2 579999976 55544443334445678996 88999988765 3567777764221 122222222345
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceee-cCCcCcc---cccCCCC-ceEEEEccC
Q 010883 324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM-DYPPQAR---DLKHPCD-QSVATYKGH 398 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~-~~~~~~~~~ 398 (498)
..|..+.|++|+..||....|. |.+|-..+.. |..+.. .++.... ...++.. ..+..+...
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------------EEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence 6799999999999999977665 9999887632 111110 0110000 0011111 112222111
Q ss_pred ceeEEEEEEEe----ccccCCCCcEEEEEecCCeEEEEECCCCcE-----EEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 399 SVLRTLIRCHF----SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 399 ~~~~~~~~~~~----~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
. ........| ++..+|+..-++..-....+.+-.++.... ...+. -..+|.+++|++++..+++-..||
T Consensus 371 g-~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 371 G-QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred C-cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCC
Confidence 1 011112222 222223222222222223455555543321 12332 357899999999998899999999
Q ss_pred cEEEecCCCCC
Q 010883 470 DVVRWEFPGNG 480 (498)
Q Consensus 470 ~i~iw~~~~~~ 480 (498)
.|.+|......
T Consensus 449 ~l~~~~~~~~~ 459 (928)
T PF04762_consen 449 SLSIYEWDLKN 459 (928)
T ss_pred CEEEEEecCCC
Confidence 99999866544
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=1.1e-08 Score=93.84 Aligned_cols=245 Identities=15% Similarity=0.164 Sum_probs=146.1
Q ss_pred EcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeecCC-C---ceeEEEEEeCCCCCeEEEEEC--CCeEEE
Q 010883 139 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS-L---RWTVTDTSLSPDQRHLVYASM--SPIVHI 202 (498)
Q Consensus 139 ~s~dg~~la~~~~----------dg~i~vw~~~~~~~~~~~~~~~~-~---~~~v~~~~~sp~~~~l~~~s~--d~~i~i 202 (498)
+||||+.|+++.. +..|.+||..+.+.+..+..... + ......++++|||++|++... ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887665 67899999999977776654322 1 123447899999999998763 689999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ceee-EEEe-ccC--C
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLS-LRIL-AHT--S 277 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~-~~~~-~~~--~ 277 (498)
.|+.+++.......+.. ..-...+++.. + +-+.||......+.+ ++.. .... .+. .
T Consensus 133 vD~~~~kvv~ei~vp~~-----------------~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC-----------------YHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE 193 (352)
T ss_pred EECCCCcEEEEEeCCCC-----------------cEEEEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence 99999988765554321 11111211211 1 112333333322221 1111 1100 011 0
Q ss_pred Cee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccC-CCceeEEecc-------ccccEEEEEEcCCCCEEEEEeC-----
Q 010883 278 DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGK----- 343 (498)
Q Consensus 278 ~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~----- 343 (498)
++. .-.|.+.++.+++.... |+|.+.|+..... .......+.. ..+.+.-++++|+++.+++...
T Consensus 194 ~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 194 YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 000 00445457777777666 9999999642211 1122222211 2234455999999998887431
Q ss_pred -----CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883 344 -----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 418 (498)
Q Consensus 344 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 418 (498)
.+.|.++|..+. +.+..+.... ..+..+++||++
T Consensus 273 thk~~~~~V~ViD~~t~----------------------------------kvi~~i~vG~-------~~~~iavS~Dgk 311 (352)
T TIGR02658 273 THKTASRFLFVVDAKTG----------------------------------KRLRKIELGH-------EIDSINVSQDAK 311 (352)
T ss_pred cccCCCCEEEEEECCCC----------------------------------eEEEEEeCCC-------ceeeEEECCCCC
Confidence 246888998773 3333333211 234557888999
Q ss_pred -EEEEEe-cCCeEEEEECCCCcEEEEec
Q 010883 419 -YIYTGS-HDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 419 -~l~~g~-~dg~i~iwd~~~~~~~~~~~ 444 (498)
+|++.+ .++.|.++|+.+++.+..+.
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 888776 57889999999999998883
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=3.8e-09 Score=101.19 Aligned_cols=265 Identities=14% Similarity=0.104 Sum_probs=164.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
.+..+++++.+|.|..+|..+|+.+.+......... ... .++..+++++.++.+..+|..+|+.........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 356788888899999999999977665433332111 111 256778888899999999999998765443321
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEeCCCCCEEEEee
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHLIYSGS 296 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~s 296 (498)
.+.+.-.. .+..++.++.++.|+.||.++++.+.++......+ .+.... +..++.+.
T Consensus 136 --------------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~ 197 (377)
T TIGR03300 136 --------------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGF 197 (377)
T ss_pred --------------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEEC
Confidence 11111111 24467778889999999999998876664332211 112222 24677888
Q ss_pred CCCeEEEEcCccccCCCceeEEecccc----c---cEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883 297 DDNLCKVWDRRCLNVKGKPAGVLMGHL----E---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 297 ~dg~i~vwd~~~~~~~~~~~~~~~~~~----~---~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
.+|.+..+|.+ .++.+....... . ....+.-+| .+..+++++.+|.+..||..+...
T Consensus 198 ~~g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~---------- 263 (377)
T TIGR03300 198 AGGKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV---------- 263 (377)
T ss_pred CCCEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE----------
Confidence 89999999987 554443221100 0 000011111 245788888899999999977421
Q ss_pred ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 447 (498)
+-...... ...|. .++..+++++.+|.|+.+|..+|+.+.......
T Consensus 264 ------------------------~W~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~ 309 (377)
T TIGR03300 264 ------------------------LWKRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK 309 (377)
T ss_pred ------------------------EEeeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc
Confidence 11111000 01111 146678888899999999999999887653211
Q ss_pred -CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 448 -SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 448 -~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
........ .+..|++++.||.|+++|..+++..
T Consensus 310 ~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 310 YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 12222223 4568889999999999998776543
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.8e-08 Score=88.78 Aligned_cols=287 Identities=15% Similarity=0.150 Sum_probs=172.0
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCC--CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEE
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVH 201 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~ 201 (498)
-.+.+..+-++|+|+++.|.++-. +|.|-.|.++. |. +...........+.+.+++++++++|+++.. .|.|.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-LTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-EEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 345667788999999999988765 46788888775 42 2222111122224488999999999999886 57899
Q ss_pred EEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEe---ccC
Q 010883 202 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRIL---AHT 276 (498)
Q Consensus 202 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~---~~~ 276 (498)
++.+.. |.......... +.+. .++ ...-+..+.+..+.|++++|++..- ...|.+|++..+++...-. ...
T Consensus 115 v~p~~~dG~l~~~v~~~~-h~g~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 115 VYPLQADGSLQPVVQVVK-HTGS--GPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred EEEcccCCccccceeeee-cCCC--CCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 999865 44333222111 1110 000 0001113788999999999988753 2369999999876543221 344
Q ss_pred CCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEecc------ccccEEEEEEcCCCCEEEEEeC-CCcEE
Q 010883 277 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG------HLEGITFIDSRGDGRYLISNGK-DQAIK 348 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~-dg~i~ 348 (498)
...+.|.|+ |++++.+... -+++|-+|........-..++.+.. .......|..++||++|.++.. ...|.
T Consensus 191 ~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 567999998 7788776655 5889999998732111122222111 1235677889999999987754 33577
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC-
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS- 427 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg- 427 (498)
+|.+.... ..+.......... .+.....++++|++|+++..++
T Consensus 270 ~f~V~~~~---------------------------------g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 270 VFSVDPDG---------------------------------GKLELVGITPTEG---QFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred EEEEcCCC---------------------------------CEEEEEEEeccCC---cCCccceeCCCCCEEEEEccCCC
Confidence 77766532 1111111111000 0112224677899999998754
Q ss_pred eEEEEECC--CCcEEEEec-cCCCCeeeeEEc
Q 010883 428 CVYVYDLV--SGEQVAALK-YHTSPVRDCSWH 456 (498)
Q Consensus 428 ~i~iwd~~--~~~~~~~~~-~h~~~v~~l~~s 456 (498)
.|.+|... +|++-.... .......|+.|.
T Consensus 314 ~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 314 NITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 57777654 455433332 233445566653
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.1e-09 Score=99.45 Aligned_cols=253 Identities=19% Similarity=0.288 Sum_probs=161.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC--CeEEE-----EECCCeEEEEECCC
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVY-----ASMSPIVHIVDVGS 207 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~-----~s~d~~i~iwd~~~ 207 (498)
++..|++|..+.|-- ..+.+.+|++.+...+...+ |...|+.+.+||.+ ..+|+ .+.-..|+||...-
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 688999998765533 34679999998743333332 34469999999974 34443 34456899998763
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeC-----------CCeEEEEECCCCeeeEEEecc
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSS-----------DDCIYVYDLEANKLSLRILAH 275 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~-----------dg~i~vwd~~~~~~~~~~~~~ 275 (498)
.............. ..=..+.|++-|.-| +.++. ..+++++++........+ ..
T Consensus 204 ~~~~~~~a~ksFFk-------------adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k 269 (566)
T KOG2315|consen 204 EGQHQPVANKSFFK-------------ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LK 269 (566)
T ss_pred ccccchhhhccccc-------------cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CC
Confidence 32211111111110 023357888877633 22221 236888888844444333 45
Q ss_pred CCCeeEEEEeCCCCCEEEE--eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEE
Q 010883 276 TSDVNTVCFGDESGHLIYS--GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLW 350 (498)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iw 350 (498)
.++|.+++|+ +++.-+++ |-.--.+.|||++ +.++..+ ..++-+++-|+|.|++|+.++-+ |.|-||
T Consensus 270 ~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 270 EGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCceEEEEC-CCCCEEEEEEecccceEEEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 7999999998 55654443 3445689999994 6666665 35777889999999999987764 789999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----- 425 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----- 425 (498)
|+.+... +..+.... ..-+ .|+|||.++++++.
T Consensus 342 Dv~n~K~----------------------------------i~~~~a~~----tt~~----eW~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 342 DVPNRKL----------------------------------IAKFKAAN----TTVF----EWSPDGEYFLTATTAPRLR 379 (566)
T ss_pred eccchhh----------------------------------ccccccCC----ceEE----EEcCCCcEEEEEeccccEE
Confidence 9988432 22222211 1111 57779999999875
Q ss_pred -CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883 426 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 426 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 458 (498)
|+.++||+. +|..+....-.. ....+.|-|-
T Consensus 380 vdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 380 VDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 678999997 676665443222 5777778753
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.26 E-value=1.3e-08 Score=97.57 Aligned_cols=261 Identities=18% Similarity=0.143 Sum_probs=159.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
++..+++++.++.+..+|..+|+.+.+.... ..+.+.-.. .+..++.++.++.+..||..+++............
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS----SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC----ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 4677888889999999999998766553321 122211111 34567777889999999999988755443321100
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-CC---C------e-eEEEEeCCCCC
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TS---D------V-NTVCFGDESGH 290 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~---~------v-~~~~~~~~~~~ 290 (498)
. . ... .+.... + ..++.+..++.+..+|..+++.+...... .. . + ....+ .+.
T Consensus 179 ~--~-----~~~----~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~ 242 (377)
T TIGR03300 179 T--L-----RGS----ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGG 242 (377)
T ss_pred e--e-----cCC----CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECC
Confidence 0 0 000 011111 2 36788888899999999999876543211 00 0 1 11122 245
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
.+++++.+|.++.||.. .++.+..... ........ ++..+++++.+|.+..+|..+.....
T Consensus 243 ~vy~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W----------- 303 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELW----------- 303 (377)
T ss_pred EEEEEEcCCEEEEEECC----CCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEE-----------
Confidence 78888899999999997 5655544431 11112222 45678888899999999997743211
Q ss_pred cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCe
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 450 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 450 (498)
....... ....+|.. .+..|++++.+|.|+++|..+|+.+..++.+...+
T Consensus 304 -----------------------~~~~~~~-----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 304 -----------------------KNDELKY-----RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred -----------------------ccccccC-----CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 1100000 00111111 35688999999999999999999999988666544
Q ss_pred e-eeEEcCCCCeEEEEeCCCcEEEe
Q 010883 451 R-DCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 451 ~-~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
. +..+. ++ .|+.++.||.|+.+
T Consensus 354 ~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE-CC-EEEEEeCCceEEEe
Confidence 3 33333 33 58888899998875
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=5.9e-10 Score=96.79 Aligned_cols=251 Identities=17% Similarity=0.230 Sum_probs=173.2
Q ss_pred cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
..++...|++...-|...-+++.+.|.+++||--. .++.-..+... -..+++++.+.++...|+
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~---------------mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY---------------MPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh---------------CCCCceEeeeeccceEEE
Confidence 35666678888888888889999999999999643 33332222111 122799999999999999
Q ss_pred EEeCCCeEEEEECC----CCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883 251 AGSSDDCIYVYDLE----ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 326 (498)
Q Consensus 251 ~g~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v 326 (498)
+|-.+|++.-+.+. .....+....|...+..+-|+ ....++++.+.|..+.---.+ .+..+..+.- ....
T Consensus 85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e----~~~~lg~Y~~-~~~~ 158 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTE----SGNRLGGYNF-ETPA 158 (404)
T ss_pred EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeec----cCCcccceEe-eccC
Confidence 99999999988654 334555667899999999997 667888899988776544333 2221111100 0011
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883 327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 406 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
+++.+.-. +...|...|.|.+-.+.... -+.+.++.+|....
T Consensus 159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~--------------------------------~~~i~~~~~h~~~~---- 200 (404)
T KOG1409|consen 159 SALQFDAL--YAFVGDHSGQITMLKLEQNG--------------------------------CQLITTFNGHTGEV---- 200 (404)
T ss_pred CCCceeeE--EEEecccccceEEEEEeecC--------------------------------CceEEEEcCcccce----
Confidence 11111111 34445555655555443311 25677777777433
Q ss_pred EEeccccCCCCcEEEEEecCCeEEEEECCCCc-EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
.+..|.+...+|++|..|..+.+||+.-.+ ....+.+|...|..+..-+--+.|++++.||.|.+|+++......
T Consensus 201 --~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 201 --TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred --EEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecC
Confidence 333666788999999999999999997654 346678999999999998888999999999999999998765443
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=9.6e-09 Score=109.10 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=156.4
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEeecC-----------CCceeEEEEEeCCCCCeEEEEEC-CCeEE
Q 010883 135 YVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------SLRWTVTDTSLSPDQRHLVYASM-SPIVH 201 (498)
Q Consensus 135 ~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp~~~~l~~~s~-d~~i~ 201 (498)
..++++++ |+++++-..++.|++||.... .+....... ..-.....+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 667777777889999998754 332221100 01123678999998887666554 56899
Q ss_pred EEECCCCceeccccccccccCccccccCC--CCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEecc---
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH--- 275 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--- 275 (498)
++|..++....+..... .+..+..... ...-.....++|+| ++..+++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~--~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGT--KGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCEEEEEeccCc--ccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 99988765433221100 0000000000 00011346899999 5666677777889999999877543 22111
Q ss_pred ------------CCCeeEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEE-------------ecc--------
Q 010883 276 ------------TSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGV-------------LMG-------- 321 (498)
Q Consensus 276 ------------~~~v~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~-------- 321 (498)
-.....|+++ +++. ++++-+.++.|++||+.. +..... +..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~t----g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKT----GGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCC----CcEEEEEecccccCcccccccCCCCchhhh
Confidence 1235678998 5555 666667789999999862 221100 000
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
.......++++++|+.+++-..++.|++||..+.........+.. .+ ..+.. .
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~---------G~---------~dG~~---------~ 854 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA---------GF---------KDGKA---------L 854 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc---------CC---------CCCcc---------c
Confidence 011245889999999888888999999999876321110000000 00 00000 0
Q ss_pred EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
.........++++++|+++++-+.++.|++||+.+++.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00000112235667899888888899999999988764
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.24 E-value=2.1e-08 Score=91.80 Aligned_cols=266 Identities=17% Similarity=0.257 Sum_probs=160.0
Q ss_pred CCceEEEEEcCCCCEEEEEECC---------------CeEEEEECCCCeEEEEEeecCCC--------------------
Q 010883 131 TSRAYVSQFSADGSLFVAGFQA---------------SQIRIYDVERGWKIQKDILAKSL-------------------- 175 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~d---------------g~i~vw~~~~~~~~~~~~~~~~~-------------------- 175 (498)
...|.-+.|||.++||.+-+.. ..+.|||..+|..+.........
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 3468889999999999985543 24899999887333221111100
Q ss_pred ----------------------ceeEEEEEeCCCC--CeEEE-----EECCCeEEEEECCCCceeccccccccccCcccc
Q 010883 176 ----------------------RWTVTDTSLSPDQ--RHLVY-----ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 226 (498)
Q Consensus 176 ----------------------~~~v~~~~~sp~~--~~l~~-----~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (498)
...|....|+|.+ ..||+ ....+.+++|.+..+..+....+...
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~------- 223 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV------- 223 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-------
Confidence 0245555666643 23333 23455666666665544443333221
Q ss_pred ccCCCCceecEEEEEEcCCCCEEEEEe-----------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE-EE
Q 010883 227 AADDGGYSFGIFSLKFSTDGRELVAGS-----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YS 294 (498)
Q Consensus 227 ~~~~~~h~~~i~~~~~s~~g~~l~~g~-----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s 294 (498)
.=..+.|.+.|++|++-- ....++++++....+.... ...++|...+|.|...++. ++
T Consensus 224 ---------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 224 ---------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ---------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEe
Confidence 123578888888776532 1246888888754443333 6688999999985444433 33
Q ss_pred eeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCccccccc
Q 010883 295 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWD 371 (498)
Q Consensus 295 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~ 371 (498)
|-.+-.+.++|++ +... +......=+.+.|+|.+++++.++-| |.+-+||....-
T Consensus 294 g~~pa~~s~~~lr-----~Nl~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf--------------- 351 (561)
T COG5354 294 GYMPASVSVFDLR-----GNLR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF--------------- 351 (561)
T ss_pred cccccceeecccc-----cceE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCce---------------
Confidence 4578889999996 3333 23344555678899999999998765 678999876511
Q ss_pred ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec------CCeEEEEECCCCcEEEEecc
Q 010883 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------DSCVYVYDLVSGEQVAALKY 445 (498)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~ 445 (498)
..+..+.+... ..| .||||+.++.+... |..|.|||+.....-
T Consensus 352 ------------------~~~~~~~~~n~----s~~----~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----- 400 (561)
T COG5354 352 ------------------KVAGAFNGLNT----SYC----DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----- 400 (561)
T ss_pred ------------------EEEEEeecCCc----eEe----eccCCceEEEecCCCcccccCcceEEEEecCchhh-----
Confidence 11212332221 111 57889999888643 788999998543322
Q ss_pred CCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 446 HTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 446 h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
..+.+.|.|.+++..+.+.+.
T Consensus 401 ---el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ---ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ---hhhhccccCCcccceeeccCC
Confidence 345566777666655555443
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=1.5e-08 Score=107.75 Aligned_cols=272 Identities=10% Similarity=0.111 Sum_probs=158.7
Q ss_pred EEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCe
Q 010883 180 TDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC 257 (498)
Q Consensus 180 ~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~ 257 (498)
..++++++ ++++++-+.++.|++||........... . ...+..- .......-.....+++.+++..|+++. .++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~-g~~G~~d-G~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-T-GEEGLRD-GSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-C-CCcCCCC-CchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 45788875 5566666678889999986543221111 0 0000000 000001122467899999888666654 4567
Q ss_pred EEEEECCCCeeeEEEecc-----------------CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec
Q 010883 258 IYVYDLEANKLSLRILAH-----------------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 320 (498)
Q Consensus 258 i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 320 (498)
|+++|+.++.. .++.+. -.....++++|.++.++++.+.++.|++||.. .+. +..+.
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~----~g~-v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS----DGV-TRVFS 721 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC----CCe-EEEEe
Confidence 99999887653 333210 12346789985477788888888999999985 222 11111
Q ss_pred c---------------ccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883 321 G---------------HLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 384 (498)
Q Consensus 321 ~---------------~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
+ .......|+++|++..| ++.+.++.|++||+.+......... .. .++.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg--~~--------~~~~----- 786 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG--DP--------TFSD----- 786 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec--cc--------ccCc-----
Confidence 1 11235679999999854 5556678999999886431100000 00 0000
Q ss_pred cCCCCceEEEEccCce--eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-------------cCCCC
Q 010883 385 KHPCDQSVATYKGHSV--LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------------YHTSP 449 (498)
Q Consensus 385 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~h~~~ 449 (498)
.+..+..... ..........++++++|+++++-+.++.|++||..++....... +.-..
T Consensus 787 ------~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 787 ------NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ------ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 0000000000 00000011233567789988888889999999998876543221 11235
Q ss_pred eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 450 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 450 v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
...++++++|+++++-+.++.|++||+.++..
T Consensus 861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 67899999999999889999999999987653
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=3.3e-10 Score=107.38 Aligned_cols=259 Identities=8% Similarity=0.064 Sum_probs=168.7
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCcccc-ccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSD 255 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~s~~g~~l~~g~~d 255 (498)
....+++|+....++++|+.||.+++..+.+.........-... ..++ .....||...|.-+.|+.+.+.|-+...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~--snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA--SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc--cccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 36889999999999999999999999998765432222110000 1111 12345899999999999999999999999
Q ss_pred CeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 256 DCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
|.|.||-+-.+.....+. ...+-|.+++|+ .+|..++....||.|.+=.+. +..+.-..-.......+.|++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvd-----GNRIwgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVD-----GNRIWGKELKGQLLAHVLWSE 166 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeec-----cceecchhcchheccceeecc
Confidence 999999998876543332 345678999998 889999999999998887664 222211111112234688999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe-c--
Q 010883 334 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF-S-- 410 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 410 (498)
|.+.++.+-.+|.+.+||....-..... . .. .-+ .....+-.++. +....| +
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~-~---------~c---~Vn--------~tg~~s~~~~k----ia~i~w~~g~ 221 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLE-K---------DC---EVN--------GTGIFSNFPTK----IAEIEWNTGP 221 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhh-h---------ce---EEe--------eeeeecCCCcc----ccceeeccCc
Confidence 9999988889999999997652110000 0 00 000 00000000000 001111 0
Q ss_pred -cccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 411 -PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 411 -~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
....||...|+++-.+|.+.|..-.+......+. ..-.|....|+++|..|+.+|.|.
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcc
Confidence 0134588899999999999887654433322332 225788999999999999998753
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=1.7e-08 Score=91.60 Aligned_cols=191 Identities=19% Similarity=0.183 Sum_probs=137.4
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-CCC---c-----eeEEEEE-eCC-CCCeEEEEECCCeEEEEEC
Q 010883 137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL---R-----WTVTDTS-LSP-DQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~---~-----~~v~~~~-~sp-~~~~l~~~s~d~~i~iwd~ 205 (498)
-..+.||+.++.. ..|.|.+||.++.. +.++... .-. . .+..-+. |++ +|.+++..|. |...|.+.
T Consensus 272 R~~nsDGkrIvFq-~~GdIylydP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 272 RNANSDGKRIVFQ-NAGDIYLYDPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP 348 (668)
T ss_pred cccCCCCcEEEEe-cCCcEEEeCCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence 3455688877754 56789999988752 2222111 000 0 0111111 444 6888888875 56777766
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
..+-.+.+ +|.+.|.-..+..++.-++.|..|| .+-|+|..+++. .++...-+.|.++..
T Consensus 349 ~~~~~iqv------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~v 409 (668)
T COG4946 349 WDGYSIQV------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKV 409 (668)
T ss_pred CCCeeEEc------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEE
Confidence 55543322 3455788888888888899999999 899999998875 456677789999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC----cEEEEeCCC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----AIKLWDIRK 354 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg----~i~iwd~~~ 354 (498)
+ +++..++.+.....+.+.|+. ++.....-+...+-|+.+.|+|++++||-+--+| .|+++|+..
T Consensus 410 s-~dGK~~vvaNdr~el~vidid----ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 410 S-PDGKKVVVANDRFELWVIDID----NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred c-CCCcEEEEEcCceEEEEEEec----CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 7 889999999999999999998 6666555556667899999999999999776654 689999886
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=5.3e-08 Score=93.25 Aligned_cols=209 Identities=14% Similarity=0.115 Sum_probs=125.2
Q ss_pred eEEEEEeCCCCCe-EEEEECC---CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883 178 TVTDTSLSPDQRH-LVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 253 (498)
Q Consensus 178 ~v~~~~~sp~~~~-l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~ 253 (498)
.+....|+|||+. ++..+.+ ..|.++|+.+++...+.... +......|+|||+.|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEE
Confidence 5778999999985 6655443 57999999888765554321 1355678999998776543
Q ss_pred C---CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCC--eEEEEcCccccCCCceeEEeccccccEE
Q 010883 254 S---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVWDRRCLNVKGKPAGVLMGHLEGIT 327 (498)
Q Consensus 254 ~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 327 (498)
. +..|+++|+.+++. ..+..+........|+ |+++.|+..+ ..+ .|.+.|+. .+.... +..... .
T Consensus 252 ~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~~r-lt~~g~--~ 322 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSVEQ-VVFHGK--N 322 (419)
T ss_pred ccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCeEe-CccCCC--c
Confidence 2 35799999988764 4455454434556898 6776655554 334 56677775 333322 221111 1
Q ss_pred EEEEcCCCCEEEEEeCC---------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883 328 FIDSRGDGRYLISNGKD---------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 398 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
...|+|||+.|+..+.. ..|.+.|+.+.. ...+...
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----------------------------------~~~LT~~ 367 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----------------------------------IRRLTAN 367 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------------------------------eEECCCC
Confidence 24899999998876643 256666765521 1111111
Q ss_pred ceeEEEEEEEeccccCCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEE
Q 010883 399 SVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSW 455 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 455 (498)
. ....|.|+|||+.|+..+.++ .+.+.++.. .....+....+.+...+|
T Consensus 368 ~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 368 G-------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred C-------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCccCCCCC
Confidence 0 113468899999887766532 466777744 333344333444544443
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.15 E-value=5.8e-08 Score=83.11 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=95.3
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883 137 SQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~ 214 (498)
++.+.||++||+- .|..|.|-...++. .+.+........-.=..++||||+.+||.+...|+|+++|+.......+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5778999998877 67788887766541 22222233333334578999999999999999999999999875543222
Q ss_pred cccccccCccccccCCCCceecEEEEEEcCCC------CEEEEEeCCCeEEEEECCCC--e---eeEEE--e-ccCCCee
Q 010883 215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------RELVAGSSDDCIYVYDLEAN--K---LSLRI--L-AHTSDVN 280 (498)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g------~~l~~g~~dg~i~vwd~~~~--~---~~~~~--~-~~~~~v~ 280 (498)
. ... +. +.....|..+.|.+-. ..|++-...|.++-|-+..+ + ....+ . .+...|.
T Consensus 82 p-~~~-----~~----~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 82 P-AMS-----FP----GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred c-ccc-----cC----CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 2 110 10 1123467788776532 25677778888877765322 1 22222 2 2467899
Q ss_pred EEEEeCCCCCEEEEeeC
Q 010883 281 TVCFGDESGHLIYSGSD 297 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~ 297 (498)
++.|. +..++|++|+.
T Consensus 152 ~~vy~-p~h~LLlVgG~ 167 (282)
T PF15492_consen 152 SAVYH-PKHRLLLVGGC 167 (282)
T ss_pred EEEEc-CCCCEEEEecc
Confidence 99997 56667766654
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.15 E-value=5.9e-10 Score=98.95 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC---eEEEEECCCCce
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTM 210 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~---~i~iwd~~~~~~ 210 (498)
...+..++.+++||.+..+....++++....+..+..........-+++.|..+......+...| .+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34456788888888888887777777655432112111112222344555555555555544434 455555444332
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG 289 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 289 (498)
.. ..||-..+++++|+||+++|+++..|..|++-.....-.+..+. +|+..|..++.. ++
T Consensus 145 ~~-----------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~ 205 (390)
T KOG3914|consen 145 EP-----------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DN 205 (390)
T ss_pred ch-----------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cC
Confidence 21 12677789999999999999999999999998887765555544 799999999995 46
Q ss_pred CEEEEeeCCCeEEEEcCccccCCCceeEEe
Q 010883 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 319 (498)
Q Consensus 290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 319 (498)
..|++|+.|++|++||++ +++.+..+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred ceeeecCCCCcEEEEecc----cCCccccc
Confidence 679999999999999998 66665443
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=6.2e-08 Score=93.24 Aligned_cols=216 Identities=13% Similarity=0.052 Sum_probs=146.1
Q ss_pred cccccCCCCCccccCCCCceEEEEEcCC------CC------EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEE
Q 010883 115 LSRYLPVNGPWPVDQTTSRAYVSQFSAD------GS------LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 182 (498)
Q Consensus 115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~d------g~------~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~ 182 (498)
+.+....+..+.+..|...|+.+.|.|- +. +||++...|.|.+||...+..+. ....+..++.++
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl 115 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDL 115 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhhe
Confidence 3344455666788899999999999883 12 56777778999999998873333 345666789999
Q ss_pred EeCC---CC-CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCe
Q 010883 183 SLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDC 257 (498)
Q Consensus 183 ~~sp---~~-~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~ 257 (498)
+|-| +. ..|+.-....++.+|+..+|+......... ....|+.+.| |.+++..-+..|.
T Consensus 116 ~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~----------------~iLs~f~~DPfd~rh~~~l~s~g~ 179 (1062)
T KOG1912|consen 116 CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH----------------EILSCFRVDPFDSRHFCVLGSKGF 179 (1062)
T ss_pred eeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC----------------cceeeeeeCCCCcceEEEEccCce
Confidence 9977 33 456666677899999999998754433221 1466788888 6777777777787
Q ss_pred EEEEECCC-------CeeeEEEeccCC-------------------------CeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883 258 IYVYDLEA-------NKLSLRILAHTS-------------------------DVNTVCFGDESGHLIYSGSDDNLCKVWD 305 (498)
Q Consensus 258 i~vwd~~~-------~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~~l~s~s~dg~i~vwd 305 (498)
|.+.+.-. ++..+.-..|.. ....++|+|.-.+.++. .....+.++|
T Consensus 180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~d 258 (1062)
T KOG1912|consen 180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFD 258 (1062)
T ss_pred EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEc
Confidence 77766432 122221112211 01224566544444443 4567899999
Q ss_pred CccccCCCceeEEeccccccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC
Q 010883 306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~ 354 (498)
++ ...++....-..+.+..+.+-|++ ..|++...||.+.+|--+.
T Consensus 259 le----~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 259 LE----YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ch----hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 97 666777766667777788888876 4688999999999997654
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=1.5e-07 Score=80.70 Aligned_cols=237 Identities=17% Similarity=0.124 Sum_probs=133.9
Q ss_pred EEeCCCCCeEEEEECCCeEEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 010883 182 TSLSPDQRHLVYASMSPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 259 (498)
Q Consensus 182 ~~~sp~~~~l~~~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~ 259 (498)
++.+++|+.||+. .|..|.|-..++.- .+....++.... -.=.-++|+||+..||.+...|+|+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~-------------PQWRkl~WSpD~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN-------------PQWRKLAWSPDCTLLAYAESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC-------------chheEEEECCCCcEEEEEcCCCeEE
Confidence 5667889888765 46677776654421 111111111110 1456799999999999999999999
Q ss_pred EEECCCCeeeEEEec-------cCCCeeEEEEeCCC-----CCEEEEeeCCCeEEEEcCcccc-CCCceeEE--ecc-cc
Q 010883 260 VYDLEANKLSLRILA-------HTSDVNTVCFGDES-----GHLIYSGSDDNLCKVWDRRCLN-VKGKPAGV--LMG-HL 323 (498)
Q Consensus 260 vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~--~~~-~~ 323 (498)
++|+....+ ..+.. -...|..+.|.+.. ...|++-..+|.++-|-+.... ........ +.. +.
T Consensus 69 vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 69 VFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP 147 (282)
T ss_pred EEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence 999976443 33322 22466777775332 2356666778888777653211 12222222 222 46
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 324 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
.+|.++.++|..++|++|+.... ........ ..-+..++.-
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s~a~----------------------------~~GLtaWRiL----- 188 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQN------QDGMSKAS----------------------------SCGLTAWRIL----- 188 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCC------CCcccccc----------------------------ccCceEEEEc-----
Confidence 78999999999898887765322 00000000 0001111100
Q ss_pred EEEEEeccccCCCCcEEEEEecCC------eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDS------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
.-+|..+.+ +...|+ +-.+|.+-+.+...........|..+..||||..||+...+|.|.+|+++
T Consensus 189 --------~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 189 --------SDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred --------CCCCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 001111111 111111 12334433333222223356789999999999999999999999999998
Q ss_pred CCCC
Q 010883 478 GNGE 481 (498)
Q Consensus 478 ~~~~ 481 (498)
.-..
T Consensus 260 sL~~ 263 (282)
T PF15492_consen 260 SLRL 263 (282)
T ss_pred cchh
Confidence 7543
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=3.5e-07 Score=95.59 Aligned_cols=283 Identities=12% Similarity=0.150 Sum_probs=168.9
Q ss_pred CceEEEEEcCCCCEEEEEEC--CC--eEEEEECCCCeEEEEEeec-----CCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 132 SRAYVSQFSADGSLFVAGFQ--AS--QIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~--dg--~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
..+...+|.+..+.+..+.. .. .|.+.....+......... ......|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 45677777777654443332 22 3444444333211111111 123457999999999999999999999999
Q ss_pred E----ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--------------
Q 010883 203 V----DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-------------- 264 (498)
Q Consensus 203 w----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-------------- 264 (498)
. +..+......-.+. .+|.+++||||+..|+..+.+++|.+.+-.
T Consensus 102 ~~~~~~~~~~~~E~VG~vd-----------------~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVD-----------------SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred EEccCCCCCceeEEEEEEc-----------------CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 9 55554443332222 279999999999999999999988876421
Q ss_pred -C--------CeeeEEEec------------------------cCCCeeEEEEeCCCCCEEEEeeC---C---CeEEEEc
Q 010883 265 -A--------NKLSLRILA------------------------HTSDVNTVCFGDESGHLIYSGSD---D---NLCKVWD 305 (498)
Q Consensus 265 -~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~l~s~s~---d---g~i~vwd 305 (498)
. |+....+.+ +...-..|+|- .||.+|++.+. . ..++||+
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEEC
Confidence 0 010011100 23345678895 89999998875 2 5799999
Q ss_pred CccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883 306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 382 (498)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
.. +....+...-.+--.+++|.|.|++||+... ...|.+|.-+.... .
T Consensus 244 Re-----G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-g----------------------- 294 (928)
T PF04762_consen 244 RE-----GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-G----------------------- 294 (928)
T ss_pred CC-----ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-e-----------------------
Confidence 74 4433333322333457899999999998764 23466665433110 0
Q ss_pred cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE--EEEecc-CCCCeeeeEEcCCC
Q 010883 383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKY-HTSPVRDCSWHPSQ 459 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~-h~~~v~~l~~sp~~ 459 (498)
+ ..+........+. ...|++|+..||....|. |.+|-..+..- .+.+.. ....+..+.|+|..
T Consensus 295 -------e--F~l~~~~~~~~v~----~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 295 -------E--FTLRFDPEEEKVI----ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred -------e--EecCCCCCCceee----EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 0 0111001111222 335666999999987666 99999877542 223321 23345569999976
Q ss_pred C-eEEEEeCCCcEEEec
Q 010883 460 P-MLVSSSWDGDVVRWE 475 (498)
Q Consensus 460 ~-~l~s~~~Dg~i~iw~ 475 (498)
+ .|...+.+|.+..++
T Consensus 361 p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 361 PLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCEEEEEecCCcEEEEE
Confidence 6 466666667665533
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=6.1e-10 Score=102.56 Aligned_cols=288 Identities=11% Similarity=0.156 Sum_probs=185.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEE---EEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~-~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
...+.+|+..|..++--.+.+-+++++.|++|++|.+... ..+ .-......|..+|.++.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4567899999999987778888999999999999998642 111 1234566788899999999999888654 789
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEe-----
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRIL----- 273 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~----- 273 (498)
|++||.--++..........+ +-.+.|.|+. +-+...+.+| +...+|+++|.+.++.+..++
T Consensus 806 iHlWDPFigr~Laq~~dapk~-----------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKE-----------GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred ceeecccccchhHhhhcCccc-----------CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 999998766553321111000 1111233332 1134444444 667899999999988766655
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEE-EeC
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL-WDI 352 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~i-wd~ 352 (498)
+...-+.+++.. +.|++++++-..|.|.+.|.+ +++.+..+....-....++ .|..+.|+....|..+.+ |..
T Consensus 874 ~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 874 GPNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CCchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 234568899997 789999999999999999999 7877777665544444443 345567777777888877 765
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 432 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 432 (498)
-.+.. .+........ ..|-.. -|.-|+++.....+.+|
T Consensus 948 ldgim------------------------------------h~q~kpppep---ahflqs---vgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 948 LDGIM------------------------------------HLQDKPPPEP---AHFLQS---VGPSLVTAQNGNILGVY 985 (1034)
T ss_pred cCCee------------------------------------eeccCCCCcc---hhhhhc---cCceeEEeccCcEEEEE
Confidence 44211 1111100000 001001 24456666666667777
Q ss_pred ECCC----CcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883 433 DLVS----GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 433 d~~~----~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
--.. ...+..++ ...+..++++.-|-..-+..|...|.|.+
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 4211 11122222 23467888888888887788888888875
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.5e-07 Score=90.20 Aligned_cols=194 Identities=11% Similarity=0.029 Sum_probs=119.8
Q ss_pred cEEEEEEcCCCCE-EEEEeC---CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE-EEeeCC--CeEEEEcCcc
Q 010883 236 GIFSLKFSTDGRE-LVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDD--NLCKVWDRRC 308 (498)
Q Consensus 236 ~i~~~~~s~~g~~-l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~d--g~i~vwd~~~ 308 (498)
......|+|||+. ++..+. +..|+++|+.+++... +....+......|+ |+++.+ ++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~- 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN- 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC-
Confidence 4678999999985 554443 3569999998887643 33455666778898 566544 444444 467777875
Q ss_pred ccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883 309 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 385 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (498)
.+ ....+..+........|+|||+.|+..+. .+ .|.++|+.+....
T Consensus 266 ---~g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--------------------------- 314 (419)
T PRK04043 266 ---TK-TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--------------------------- 314 (419)
T ss_pred ---CC-cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE---------------------------
Confidence 33 33444444433445679999998876653 23 5777777653210
Q ss_pred CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---------CeEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883 386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWH 456 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 456 (498)
. .++.+. +.+.|||||++|+..+.. ..|++.|+.++... .+... .......|+
T Consensus 315 -----r-lt~~g~----------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~S 376 (419)
T PRK04043 315 -----Q-VVFHGK----------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFS 376 (419)
T ss_pred -----e-CccCCC----------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEEC
Confidence 0 011111 123678899988876653 36889999888653 44332 233468999
Q ss_pred CCCCeEEEEeCC-Cc--EEEecCCCCCC
Q 010883 457 PSQPMLVSSSWD-GD--VVRWEFPGNGE 481 (498)
Q Consensus 457 p~~~~l~s~~~D-g~--i~iw~~~~~~~ 481 (498)
|||+.|+..+.+ +. +.+.++++...
T Consensus 377 PDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 377 SDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred CCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 999977665543 33 55666655433
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.09 E-value=4.1e-08 Score=82.69 Aligned_cols=194 Identities=12% Similarity=0.029 Sum_probs=129.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
-+||.|+..|...+|...+.+...... ..+...|+-+.=.- ...-+..++.|.++++.+++.+..........
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c--d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---- 158 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC--DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---- 158 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee--cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc----
Confidence 579999999999999998763333222 22221222111111 12345677889999999887654322222111
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeE-EEeccCCCeeEEEEeCCCCCEEEEeeCCC
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSL-RILAHTSDVNTVCFGDESGHLIYSGSDDN 299 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 299 (498)
-.+.++++++|++++++.+....|..|.+.... .+. ......+.-.+..|+ .....+|++..||
T Consensus 159 ------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qdg 225 (344)
T KOG4532|consen 159 ------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQDG 225 (344)
T ss_pred ------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecCC
Confidence 047889999999999999999999999886543 222 223445566788997 7788999999999
Q ss_pred eEEEEcCccccCCCc-eeEEeccccccEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCC
Q 010883 300 LCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 300 ~i~vwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~--~l~s~~~dg~i~iwd~~~~~ 356 (498)
++.|||+|....... ....-..|.+.+..+.|++.|. +|+..-.-+.+.+.|+++..
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999999985432221 1223345889999999998653 34444445679999999854
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=3.7e-09 Score=90.67 Aligned_cols=272 Identities=14% Similarity=0.179 Sum_probs=163.1
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc--CccccccCCCCceecEEEEEEcCCC--CEEEEE
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD--GLDFSAADDGGYSFGIFSLKFSTDG--RELVAG 252 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~s~~g--~~l~~g 252 (498)
..|+++.|...|.||++|...|.|.++.-....- ...+.....+ ..+|.--..-.-...|..+.|..++ ..++..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccc-cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3699999999999999999999999998654331 1111110000 0111100000112368888888654 357777
Q ss_pred eCCCeEEEEECCCCe-------------------------------------ee----EE-E-eccCCCeeEEEEeCCCC
Q 010883 253 SSDDCIYVYDLEANK-------------------------------------LS----LR-I-LAHTSDVNTVCFGDESG 289 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~-------------------------------------~~----~~-~-~~~~~~v~~~~~~~~~~ 289 (498)
+.|.+|++|.+.... .+ .+ + ..|...++++.|+ .+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cch
Confidence 789999999875430 00 00 1 2577788999997 666
Q ss_pred CEEEEeeCCCeEEEEcCccccCCCceeEEeccc-----cccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
+.++++ .|-.|.+|++...+... .+..+..| ..-|++..|+|. ...+...+..|.|++-|++....-...
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~-- 260 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS-- 260 (460)
T ss_pred heeeec-cceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc--
Confidence 666554 57789999987443222 22233333 345888899995 456777788899999999853211000
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC-cEEEE
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAA 442 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~ 442 (498)
.+..+. ..++ ..+.....+++......|+++|+|+++-+. -+|.|||+... .++.+
T Consensus 261 -~klfe~----------------~~D~-----v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 261 -KKLFEL----------------TIDG-----VDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred -hhhhhh----------------ccCc-----ccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCcee
Confidence 000000 0000 001111112222333467889999998765 46999999864 46676
Q ss_pred eccCC------------CCe---eeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 443 LKYHT------------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 443 ~~~h~------------~~v---~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
+.-|. ..| ..+.||-|.+.+.+|+..+..-|+-..
T Consensus 318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 65442 233 347888888899999888877777643
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=1.5e-08 Score=85.28 Aligned_cols=195 Identities=14% Similarity=0.052 Sum_probs=129.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883 245 DGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
.-.+|+.|+..|...+|...+.+....+ ..|...|+-+.-.-....-+..++.|.++++.++.... .+.. .|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~~-----~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKFA-----VHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-ccce-----eec
Confidence 3347999999999999999876543333 24444433221110223345677888899888875211 1111 132
Q ss_pred c--cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 324 E--GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 324 ~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
. .+.++.+++|++++++.+....|.+|.+..... ..+..+...
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--------------------------------y~~~~~~a~--- 201 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--------------------------------YIENIYEAP--- 201 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--------------------------------eeeeeEecc---
Confidence 2 378899999999999999999999999886331 111111111
Q ss_pred EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE-----EeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEe
Q 010883 402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-----ALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRW 474 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw 474 (498)
.....|...|+.....+|++..||++.|||++...... +-..|.+.++.+.|++.|. +|...-.-+.+.+-
T Consensus 202 --t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 202 --TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred --cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 11222455677788999999999999999998754322 2236889999999999776 55555566788999
Q ss_pred cCCCCCCC
Q 010883 475 EFPGNGEA 482 (498)
Q Consensus 475 ~~~~~~~~ 482 (498)
|+.+....
T Consensus 280 D~R~~~~~ 287 (344)
T KOG4532|consen 280 DTRNYVNH 287 (344)
T ss_pred EcccCcee
Confidence 98877543
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7.6e-10 Score=96.18 Aligned_cols=176 Identities=22% Similarity=0.334 Sum_probs=129.7
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC-CCceeE
Q 010883 241 KFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAG 317 (498)
Q Consensus 241 ~~s~--~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~ 317 (498)
+|+- -|-+ ++.+.+-.|-+-|++++.. ..+ ...++|.++.|. ..+++++.|...|.|..+|+|+... .+.+..
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-ccc-ccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 5553 2334 4444566788999998754 233 477899999997 7789999999999999999996532 233444
Q ss_pred EeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc
Q 010883 318 VLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 396 (498)
Q Consensus 318 ~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (498)
.+ -|...|+++..-. ++++|++.+.+|+|++||++..+. +..+..+.
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qYe 341 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQYE 341 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeeee
Confidence 44 4889999988766 788999999999999999997432 34588899
Q ss_pred cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC----CCeeeeEEc
Q 010883 397 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT----SPVRDCSWH 456 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~s 456 (498)
+|....+....... +....+++++.|...+||.+.+|.++.++.... ..+.+++|.
T Consensus 342 GHvN~~a~l~~~v~----~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 342 GHVNLSAYLPAHVK----EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccc----cccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99866555444333 356788889999999999999999998886332 234555553
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=4.3e-09 Score=93.59 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=110.5
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCce-eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD- 255 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d- 255 (498)
.+..+..+|.+++||++..+....++++..... ......... ....+++.|..+......+..-
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--------------~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--------------PKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--------------ccCcceeeeeeccceEEEEeecC
Confidence 344556778888999888888877777655432 111111100 0133445555555555554444
Q ss_pred --CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEc
Q 010883 256 --DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSR 332 (498)
Q Consensus 256 --g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~ 332 (498)
..+.+|....+.+. .+.+|-+.++.++|+ +++++|+++..|..|++-... ....+..+ .||..-|..++.-
T Consensus 130 D~~~~di~s~~~~~~~-~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp----a~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE-PILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP----ATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc-hhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC----cccchhhhccccHhheeeeeec
Confidence 44555555545443 344999999999998 788999999999999997765 33344443 4699999999988
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883 333 GDGRYLISNGKDQAIKLWDIRKMSSNAS 360 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 360 (498)
++ ..|++++.|++|++||+++++....
T Consensus 204 ~~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 204 DN-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred cC-ceeeecCCCCcEEEEecccCCcccc
Confidence 65 5699999999999999999776543
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=6.7e-09 Score=86.93 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---------cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
|..+.|+.+- .|+++..++.+.......+........ ...+.++-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 6666776554 466666666665555444322111100 001111111112222456789999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-----SDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-----~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
.+. ......++...+. .-.+.+....+..+.++. .-+..+.|++...+....-......|
T Consensus 118 ~~~-~~~~~~~i~~~~~--------------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v 182 (319)
T KOG4714|consen 118 TDK-DLALMSRIPSIHS--------------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV 182 (319)
T ss_pred chH-HHhhhhhcccccc--------------cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence 765 2111111111111 112223333444444432 12346667665443322212223459
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.+++-+|...+++++|+.||.+-+||.+.. ..+...+..|..+|+.+-|+| ++..|++++.||.+-.||..+
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999998888899999999999999999833 456677889999999999999 578899999999999999764
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.6e-07 Score=87.10 Aligned_cols=290 Identities=12% Similarity=0.074 Sum_probs=170.2
Q ss_pred EEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCce
Q 010883 155 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS 234 (498)
Q Consensus 155 i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 234 (498)
...|+...+... ......++.-+-+.|||.|.||++--.-| |.+|--.+-.....+. |.
T Consensus 192 svfwN~~~n~p~---~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-----------------Hp 250 (698)
T KOG2314|consen 192 SVFWNSKFNEPS---LIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-----------------HP 250 (698)
T ss_pred EEEccccCCchh---hhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-----------------CC
Confidence 456765543111 12233456778899999999999987766 7899654433322222 21
Q ss_pred ecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEecc--CCCe-eEEEEeCCCCCEEEEeeCCCe
Q 010883 235 FGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAH--TSDV-NTVCFGDESGHLIYSGSDDNL 300 (498)
Q Consensus 235 ~~i~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~~l~s~s~dg~ 300 (498)
.|.-+.|||..++|++-+. ...++|||+.+|...+.+... ...+ .-+.|| .++.++|.-.. ..
T Consensus 251 -~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 -GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NS 327 (698)
T ss_pred -CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEecc-ce
Confidence 5888999999999998653 256999999999988877652 2222 345787 88888887665 58
Q ss_pred EEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCCCccccccCcccccccceee
Q 010883 301 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 375 (498)
Q Consensus 301 i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 375 (498)
|.||+.. ...++..-.-.-.+|....|+|.++.||--... ..+.+..+.+.+.....+.-.. .-..+
T Consensus 328 isIyEtp----sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV----sDckL 399 (698)
T KOG2314|consen 328 ISIYETP----SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV----SDCKL 399 (698)
T ss_pred EEEEecC----ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee----eccEE
Confidence 8999875 322322222234678889999998887743321 2355555554433222211000 00011
Q ss_pred cCCcCcccccC-----------CC--CceEEEEccCce---eEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCC
Q 010883 376 DYPPQARDLKH-----------PC--DQSVATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVS 436 (498)
Q Consensus 376 ~~~~~~~~~~~-----------~~--~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~ 436 (498)
.+..++..+.. .+ .-.+..+..... ...+....+..+|-|.|..+++-+. ..++.+|.+.+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 11111111110 00 011112222211 1122233445567788887776543 35788888773
Q ss_pred -C---cEEEEeccCCCCeeeeEEcCCCCeEEEE---eCCCcEEEecCCC
Q 010883 437 -G---EQVAALKYHTSPVRDCSWHPSQPMLVSS---SWDGDVVRWEFPG 478 (498)
Q Consensus 437 -~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~---~~Dg~i~iw~~~~ 478 (498)
. +++..+. ....+.+.|+|.|++++.+ |..|.+.++|.+.
T Consensus 480 ~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 480 NIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 2 2344443 2567889999999988776 4578899999874
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.00 E-value=3.6e-06 Score=75.31 Aligned_cols=223 Identities=18% Similarity=0.185 Sum_probs=138.4
Q ss_pred EEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc-CCCCEEEEEeCCCeE
Q 010883 181 DTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCI 258 (498)
Q Consensus 181 ~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-~~g~~l~~g~~dg~i 258 (498)
++.|.+ ++.++++-...+.|..|+..++....... . ....+++. +++. |+++...+ +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~------------------~~~G~~~~~~~g~-l~v~~~~~-~ 62 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-P------------------GPNGMAFDRPDGR-LYVADSGG-I 62 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-S------------------SEEEEEEECTTSE-EEEEETTC-E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-C------------------CCceEEEEccCCE-EEEEEcCc-e
Confidence 467888 56666665568899999998876533111 1 25667777 6654 55555555 5
Q ss_pred EEEECCCCeeeEEEec-----cCCCeeEEEEeCCCCCEEEEeeCC--------CeEEEEcCccccCCCceeEEecccccc
Q 010883 259 YVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEG 325 (498)
Q Consensus 259 ~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~ 325 (498)
.++|..+++....... .....+.+++. +++++.++.... |.|..++.. ..+..+......
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~~~~~~~~~~~~ 135 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD------GKVTVVADGLGF 135 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT------SEEEEEEEEESS
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC------CeEEEEecCccc
Confidence 6669998865444332 33567889996 788877766543 456666652 233334444566
Q ss_pred EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883 326 ITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 404 (498)
Q Consensus 326 v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
.+.|+|+|+++.|+ +-+..+.|..+++......... .+.+..+.... ...
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~--g~p 186 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN---------------------------RRVFIDFPGGP--GYP 186 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE---------------------------EEEEEE-SSSS--CEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceee---------------------------eeeEEEcCCCC--cCC
Confidence 78999999999776 5566788888888642210000 01111111111 111
Q ss_pred EEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc-CCCCeEEEE
Q 010883 405 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSS 465 (498)
Q Consensus 405 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~ 465 (498)
-. .++..+|++.++....+.|.++|.. |+.+..+......+++++|. ++.+.|+..
T Consensus 187 DG----~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 187 DG----LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EE----EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred Cc----ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 11 2455589888887889999999987 99888887555689999994 665644433
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.5e-09 Score=98.61 Aligned_cols=246 Identities=14% Similarity=0.137 Sum_probs=159.0
Q ss_pred eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce-eccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883 170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 248 (498)
Q Consensus 170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~ 248 (498)
....+|+..|..++--.+.+-+++++.|++|++|.++..-- ...... ...-..|+.+|.++.|..+.++
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaC----------QfTY~aHkk~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSAC----------QFTYQAHKKPIHDIGFLADLRS 798 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccccee----------eeEhhhccCcccceeeeeccce
Confidence 34567888888887777788899999999999999864211 100000 0011247779999999999888
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEEe---cc--CCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEe---
Q 010883 249 LVAGSSDDCIYVYDLEANKLSLRIL---AH--TSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVL--- 319 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~--- 319 (498)
++++ ||.|.+||.--+.++..+. .| .+.|.|+.- .+..++++| +...+|+++|.+ .......+
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaR----sce~~~E~kVc 870 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAESTVKLFDAR----SCEWTCELKVC 870 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc--Ccchheeeeccchhhheeeecc----cccceeeEEec
Confidence 7765 7889999988777655332 12 223344321 244555555 788999999998 44433333
Q ss_pred --ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883 320 --MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397 (498)
Q Consensus 320 --~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
.+...-+.++++.+.|+.++++-.+|.|.+.|.+++. .+..|+.
T Consensus 871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----------------------------------vINswrp 916 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----------------------------------VINSWRP 916 (1034)
T ss_pred cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----------------------------------eeccCCc
Confidence 2345668999999999999999999999999999843 2222221
Q ss_pred CceeEEEEEEEeccccCCCCcEEEEEecCCeEEE-EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV-YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
-. |..-.--.|..+.|+....|.++.+ |....|......+....+..-+ -.-|+.|+++.....+.+|.-
T Consensus 917 me-------cdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 917 ME-------CDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred cc-------chhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEec
Confidence 11 0000011234556777777888888 8877776665555333332211 224667888877777777753
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.1e-07 Score=91.67 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=177.9
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-----------
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG----------- 246 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g----------- 246 (498)
.-.++.|+|.| +||.|+. ..|.+.|..+-+.+..... |...|+.+.|.|-.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~----------------h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIEL----------------HQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhcccc----------------CccceeEEEeccCCCchhccCcccc
Confidence 46678899877 5666664 5688888877665544432 44579999998731
Q ss_pred -CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC--C-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883 247 -RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE--S-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 322 (498)
Q Consensus 247 -~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 322 (498)
-.||++...|.|.+||...+..+..+..|..++..++|-+. + ..+|++-....++.+|+.. +++.+......
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd----tG~k~Wk~~ys 154 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD----TGEKFWKYDYS 154 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc----CCceeeccccC
Confidence 25777888899999999999888888889999999999632 2 3677777888899999987 77877777766
Q ss_pred cccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 323 LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 323 ~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
.....|+.+.| |.+++..-+..|.+.+-+.-....+..... ...+..-.-.+.........+.....-...
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk-----~~qI~sd~Sdl~~lere~at~ns~ts~~~s--- 226 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK-----EFQITSDHSDLAHLERETATGNSTTSTPAS--- 226 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce-----eEEEecCccchhhhhhhhhccccccCCCcc---
Confidence 67778899988 677888888888888777654332221100 000000000000000000000000000000
Q ss_pred EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCC
Q 010883 402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~ 478 (498)
...+..+...+|+|.-+.++.......+.|+|++-..++....-..+.+.-+.|-|+.+ .|+..-.||.+.+|--..
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 00000111234677766666667778899999998888888876667777778888776 889999999999997544
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=2.5e-06 Score=76.09 Aligned_cols=223 Identities=19% Similarity=0.199 Sum_probs=138.0
Q ss_pred CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCC
Q 010883 151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 230 (498)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (498)
.+|+|..||..+|+.+............+ +. ..+++..+++++.++.|..||..+|+.............
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-------- 70 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-------- 70 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--------
Confidence 36899999999998887765422222222 11 233667777888999999999999987666554322111
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCC---CeeEEEEeCCCCCEEEEeeCCCeEEEEcC
Q 010883 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDR 306 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~l~s~s~dg~i~vwd~ 306 (498)
. . ...+..+++++.++.|+.+|..+++.+.+. ..... ........ ..+..++++..++.|..+|+
T Consensus 71 -----~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 71 -----A----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp -----G----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEET
T ss_pred -----e----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEec
Confidence 1 1 123446777778889999999999988774 32211 11122221 23678888888999999999
Q ss_pred ccccCCCceeEEecccccc----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeec
Q 010883 307 RCLNVKGKPAGVLMGHLEG----------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 376 (498)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (498)
+ .++.+......... +..-....++ .++.++.++.+..+|+.+..
T Consensus 140 ~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~-------------------- 194 (238)
T PF13360_consen 140 K----TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE-------------------- 194 (238)
T ss_dssp T----TTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE--------------------
T ss_pred C----CCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC--------------------
Confidence 8 77776666543321 1222222344 67777777754444888732
Q ss_pred CCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 377 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
.+ +.... ... ......++..|++++.++.|..||+.+|+.+..
T Consensus 195 --------------~~--w~~~~--~~~-----~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 195 --------------KL--WSKPI--SGI-----YSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp --------------EE--EEECS--S-E-----CECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred --------------EE--EEecC--CCc-----cCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 11 11110 000 001223677888888999999999999998754
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=5e-09 Score=91.21 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=112.0
Q ss_pred EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Q 010883 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----- 266 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~----- 266 (498)
++.+.+..|-+-|+++|....... .+.|.++.|...++++..|+.+|.|..+|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~s------------------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQS------------------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred ecccccceeEEEEeeccccccccc------------------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 344556677788887765433321 226888999988999999999999999999865
Q ss_pred eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE--EcCCCCEEEEEeCC
Q 010883 267 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKD 344 (498)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~s~~~d 344 (498)
.+..++ -|.+.|+++.....++++|++.+.+|+|++||+|..+ .++-+..+.+|...-.-+- ..+....+++++.|
T Consensus 290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCe
Confidence 233333 7999999998875578899999999999999999443 2334888888876544433 35666788899999
Q ss_pred CcEEEEeCCCCCCcccc
Q 010883 345 QAIKLWDIRKMSSNASC 361 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~ 361 (498)
...+||.++.+......
T Consensus 368 cytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTI 384 (425)
T ss_pred eEEEEEecccCceeecc
Confidence 99999999986544333
No 299
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=8.4e-10 Score=107.14 Aligned_cols=205 Identities=21% Similarity=0.226 Sum_probs=145.0
Q ss_pred cccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe
Q 010883 111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 190 (498)
+..+.+++.+ -..++.|+..-+|++|+.+.+.|+.|+-.|.|++|++.+|.... ....|..+|+.+.-+.||..
T Consensus 1084 r~~IFSRFr~---w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1084 RQFIFSRFRS---WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred chhhHhhccc---chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce
Confidence 3344555544 34678999999999999999999999999999999999984333 45688889999999999998
Q ss_pred EEEEECC--CeEEEEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 191 LVYASMS--PIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 191 l~~~s~d--~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
+++.+.. ....+|+..+ +.....+. .-.++.|+.....-+.|+......+||+.++.
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~--------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFD--------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccc--------------------ccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 8876543 3578999865 11111111 45678888765555666666679999999998
Q ss_pred eeEEEe----ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC
Q 010883 268 LSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 343 (498)
Q Consensus 268 ~~~~~~----~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~ 343 (498)
...++. +....-++..|+ |...+++ .|| .+||++ ....++.+......+ .-.|+|+|..++..+
T Consensus 1218 ~l~tylt~~~~~~y~~n~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS- 1285 (1516)
T KOG1832|consen 1218 PLQTYLTDTVTSSYSNNLAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS- 1285 (1516)
T ss_pred HHHHhcCcchhhhhhccccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeec-
Confidence 766632 222233778898 5556654 444 479998 556666555433222 335999999998876
Q ss_pred CCcEEEEeCCCCCC
Q 010883 344 DQAIKLWDIRKMSS 357 (498)
Q Consensus 344 dg~i~iwd~~~~~~ 357 (498)
-|||+++...
T Consensus 1286 ----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1286 ----EIWDMRTFKL 1295 (1516)
T ss_pred ----hhhhhHHHHH
Confidence 5899998543
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=9.2e-09 Score=98.19 Aligned_cols=264 Identities=17% Similarity=0.172 Sum_probs=163.9
Q ss_pred CCceEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCC
Q 010883 131 TSRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 131 ~~~v~~~~~s~dg--~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~ 207 (498)
.-.|-.++|+|.. .+-++......-.+|++.....-......++|...|+.+.|.|.. ..+++++.|-.++.||+.+
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 3456777888864 333433344455699987654444455678899999999999965 5788999999999999987
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~ 286 (498)
...... .... -......++|+-....+++.+....|.+||++.+. ++..+++|...|+.+.|+.
T Consensus 147 p~~p~y-s~~~--------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 147 PHRPFY-STSS--------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred CCccee-eeec--------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence 543111 1111 11145678999766566677777889999998764 5667788999999999976
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
.....+.+++.||+|+.||..... ...... .....+|..-.+.|-|. ++.---.+..+.+++.++......
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt--~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n---- 284 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKST--TESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN---- 284 (1081)
T ss_pred hhhhhhcccCCCCceeeecccccc--ccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhc----
Confidence 666678899999999999986321 111111 12345566666666433 332221222444444443211100
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEE--EEEEEec--cccCCCCcEEEEEecCCeEEEEECCC
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT--LIRCHFS--PVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
.....+++..|.+|..... ..++.-. ..+....-.|++=+.|..+++|-+.+
T Consensus 285 --------------------~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 285 --------------------VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred --------------------cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 0011367888888874321 1111100 11222234688999999999998754
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=2.1e-06 Score=82.61 Aligned_cols=267 Identities=12% Similarity=-0.006 Sum_probs=156.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEE-----EEEeCC--CCCeEEEEECCCeEEEEECCCCceecccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-----DTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLAN 215 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-----~~~~sp--~~~~l~~~s~d~~i~iwd~~~~~~~~~~~ 215 (498)
+..+++++.+|.|.-+|..+|+.+.+....... .... .+.-.| ++..++.++.++.+..+|.++|+......
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-GWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-cccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 557777778899999999998776654332210 0000 001111 35567778889999999999998766555
Q ss_pred ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEeCCCCC
Q 010883 216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGH 290 (498)
Q Consensus 216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~ 290 (498)
..... ...++ . .+..++++..++.|+-+|..+++.+-+.......+ .+.... +.
T Consensus 148 ~~~~~------------~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~ 206 (394)
T PRK11138 148 VAGEA------------LSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FG 206 (394)
T ss_pred CCCce------------ecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CC
Confidence 33210 00111 1 13457778889999999999999877664321111 111111 23
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEecccc----c---cEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----E---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~---~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
.++.++.+|.+..+|.. .++.+....... . ....+..+| .+..++.++.+|.+..+|..+++....
T Consensus 207 ~v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~- 281 (394)
T PRK11138 207 GAIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK- 281 (394)
T ss_pred EEEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe-
Confidence 56777888999888886 444333221100 0 011111122 245677777889999999887432111
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
...... ..+. .++..|+.++.+|.++.+|..+|+.+.
T Consensus 282 ---------------------------------~~~~~~--------~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 282 ---------------------------------REYGSV--------NDFA--VDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred ---------------------------------ecCCCc--------cCcE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 000000 0011 145678888899999999999998876
Q ss_pred EeccCC-CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 442 ALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 442 ~~~~h~-~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
....-. ....+... .+..|+.++.||.|+..|..+++.
T Consensus 319 ~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 319 SQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred cccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 543211 11222222 245678888999999988877653
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=1.6e-08 Score=84.76 Aligned_cols=175 Identities=9% Similarity=0.101 Sum_probs=113.8
Q ss_pred cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883 115 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 194 (498)
Q Consensus 115 ~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 194 (498)
..+.....+.+.+..|.++-.+-+.+-.++.++++..||.+.+++.+....+..... ..|. .-.+.+....++.+.++
T Consensus 73 ~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~-~~~~-~~as~~~~~~~~~i~s~ 150 (319)
T KOG4714|consen 73 WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIP-SIHS-GSASRKICRHGNSILSG 150 (319)
T ss_pred hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcc-cccc-cccccceeecccEEecC
Confidence 345555566677777888888888888889999999999999999876311111111 0111 11112222344444443
Q ss_pred EC-----CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee
Q 010883 195 SM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL 268 (498)
Q Consensus 195 s~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~ 268 (498)
.. -+..+.|+++..+....... -...|.+++-+| +.+.+++|+.||.+-+||.+....
T Consensus 151 ~~g~~n~~d~~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~ 214 (319)
T KOG4714|consen 151 GCGNWNAQDNFYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM 214 (319)
T ss_pred CcceEeeccceeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc
Confidence 21 12344454433221111000 011488888888 455778888999999999988643
Q ss_pred e-EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 269 S-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 269 ~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
. ..+..|+.++..+-|+|.++..|++++.||.+..||..
T Consensus 215 p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 215 PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 3 34568999999999999999999999999999999975
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=8.2e-08 Score=94.12 Aligned_cols=182 Identities=18% Similarity=0.258 Sum_probs=134.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883 245 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
++..++.|+....+..+|+++.+..+...-..+.|.-+.. +++++.+|...|+|.+-|.+ ..+.+.++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 4456777877788999999998877666555555666665 47899999999999999998 8889999999999
Q ss_pred cEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883 325 GITFIDSRGDGRYLISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 395 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
.|..+.. .|+.|++++. |..|+|||+|.+..........
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~------------------------------ 266 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY------------------------------ 266 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc------------------------------
Confidence 9987766 5788998875 6678999999876543321110
Q ss_pred ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC-CcE---EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883 396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 471 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~---~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i 471 (498)
+. .-..|.|.+ ...+++.+..|...+-|..+ +.+ +..+......+..+++++++..|+.+..+|.|
T Consensus 267 -~P------~flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 267 -GP------QFLRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred -Cc------hhhhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 00 011123332 34688888899999999433 122 23333334559999999999999999999999
Q ss_pred EEec
Q 010883 472 VRWE 475 (498)
Q Consensus 472 ~iw~ 475 (498)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=3.3e-06 Score=81.31 Aligned_cols=265 Identities=15% Similarity=0.105 Sum_probs=155.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEE-EEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 220 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (498)
++..++.++.+|.+..+|..+|+.+.+..... .+.+ ... .+..++++..++.+..+|..+|+...........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC----ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 34567778889999999999997665543221 1211 111 2445667778899999999999876655432110
Q ss_pred cCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC----C---eeEEEEeC-CCCCEE
Q 010883 221 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS----D---VNTVCFGD-ESGHLI 292 (498)
Q Consensus 221 ~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~-~~~~~l 292 (498)
... .+...++. .+..++.++.+|.+..+|..+++.......... . ...+..+| -.+..+
T Consensus 193 --~~~-----~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 193 --LTL-----RGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred --ccc-----cCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 000 00011221 123577778889999999999886554321100 0 00111111 024567
Q ss_pred EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 372 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 372 (498)
+.++.+|.+..+|.. .++.+..... .....+.. .+..|+.++.+|.+..+|..+........
T Consensus 260 y~~~~~g~l~ald~~----tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~---------- 321 (394)
T PRK11138 260 YALAYNGNLVALDLR----SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS---------- 321 (394)
T ss_pred EEEEcCCeEEEEECC----CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc----------
Confidence 778889999999987 5555443321 11112222 45677778889999999987743211100
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 452 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 452 (498)
.. ... ...+|.. .+.+|+.++.+|.|+++|..+|+.+...+.....+.+
T Consensus 322 ---------------------~~-~~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 322 ---------------------DL-LHR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred ---------------------cc-CCC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence 00 000 0011111 2456788999999999999999998887644333332
Q ss_pred -eEEcCCCCeEEEEeCCCcEEEecC
Q 010883 453 -CSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 453 -l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
..+ .+..|+.++.||.|+.++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 222 2447888899999988765
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=1.6e-05 Score=71.13 Aligned_cols=197 Identities=17% Similarity=0.147 Sum_probs=126.6
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC-CCCCeEEEEECCCeEEEEECCCCceecc
Q 010883 136 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 136 ~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~s~d~~i~iwd~~~~~~~~~ 213 (498)
++.|.+ +|.++++--..+.|..|+..++.... ..... ...+++. +++++ +.+...+ +.++|..+++...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~----~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG----PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS----EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC----CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEE
Confidence 567888 77777777778999999999874322 22222 6667777 66554 4445444 56669998876655
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEEEeccCCCeeEEEEe
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG 285 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 285 (498)
....... ......+++++.++|++.++.... |.|+.++.. ++... +...-...+.|+|+
T Consensus 76 ~~~~~~~-----------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGG-----------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFS 142 (246)
T ss_dssp EEEETTC-----------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEE
T ss_pred eeccCCC-----------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEEC
Confidence 5542110 012368999999999966665543 568888887 55433 33445667899998
Q ss_pred CCCCCEE-EEeeCCCeEEEEcCccccCCCc---eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 286 DESGHLI-YSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 286 ~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
++++.| ++-+..+.|..+++........ ....+....+..-.+++..+|++.++....+.|.++|.+.
T Consensus 143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 666655 5667788899999862211111 1222222223477899999999888888889999999763
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=9e-08 Score=86.46 Aligned_cols=285 Identities=11% Similarity=0.069 Sum_probs=177.6
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCC
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 208 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~ 208 (498)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-......|...|.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55666666544 3478999999999999986542233333445677788999999999999999887 999999999886
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCC--CEEEEE-eCCCeEEEEECCCCee--eEEEeccCCCeeEEE
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAG-SSDDCIYVYDLEANKL--SLRILAHTSDVNTVC 283 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g--~~l~~g-~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~ 283 (498)
......+..... ...+...++.. ..|+++ -.++.|.++|-...-+ ...-.-|..+|.++.
T Consensus 87 DminmiKL~~lP---------------g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 87 DMINMIKLVDLP---------------GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred chhhhcccccCC---------------CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 655444433321 11122222211 123333 3578899999765542 233346999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCcc-ccCCCc----------eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRC-LNVKGK----------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
++ +-+..+++....|.|.-|.... .+.... -+..+........++.|+|++..+.+-+.|..|+++++
T Consensus 152 y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 152 YN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 98 7788888999999999999862 110011 11112223455789999999999999999999999999
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCC-CCceE---EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSV---ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 428 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 428 (498)
+++...+.............+. ...+.+. .++.+ +.+..+.... .....|...|++|+-|+-=|
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks------~y~l~~VelgRRmaverelek~~~~~-----~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKS------PYGLMHVELGRRMAVERELEKHGSTV-----GTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred ccchhhhhhhccchhhhhcccc------ccccceeehhhhhhHHhhHhhhcCcc-----cceeEEcCCCCEEEeeccee-
Confidence 9977655543322111111100 0000000 00000 0111111111 11224566799999988777
Q ss_pred EEEEECCCCcEEEEe
Q 010883 429 VYVYDLVSGEQVAAL 443 (498)
Q Consensus 429 i~iwd~~~~~~~~~~ 443 (498)
|++.++.++.++..+
T Consensus 299 ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 299 IKVINLDTNTVVRIL 313 (558)
T ss_pred EEEEEeecCeEEEEe
Confidence 899999888776554
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=1.9e-06 Score=76.84 Aligned_cols=224 Identities=18% Similarity=0.150 Sum_probs=135.0
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 276 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 276 (498)
+|.|..||..+|+............ ...+. ..+++..+++++.++.|+.||..+++.+.+... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~--------------~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG--------------GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-P 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS--------------SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-S
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC--------------Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-c
Confidence 6889999998888776665422110 12211 222466788888999999999999998877764 3
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-cccc---ccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHL---EGITFIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~---~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
..+..... ..+..+++++.++.++.+|.. .++.+... .... ..........++..++++..++.|..+|+
T Consensus 66 ~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 66 GPISGAPV--VDGGRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp SCGGSGEE--EETTEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred ccccceee--ecccccccccceeeeEecccC----CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 32222112 234566777788899999987 77776663 2221 11122222223778888888999999999
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee--EE---EEEEEeccccCCCCcEEEEEecCC
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL--RT---LIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
+++.. +-.+...... .. .......+.+. ++ .++.++.++
T Consensus 140 ~tG~~----------------------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g 183 (238)
T PF13360_consen 140 KTGKL----------------------------------LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG 183 (238)
T ss_dssp TTTEE----------------------------------EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS
T ss_pred CCCcE----------------------------------EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC
Confidence 98543 2222221100 00 00000111222 34 777777777
Q ss_pred eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.+.-+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+.+++.
T Consensus 184 ~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 54444999999775333 2233332 345777788787999999999988753
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=9.2e-09 Score=62.25 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=36.9
Q ss_pred CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 437 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
++++..+.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.79 E-value=8.6e-06 Score=83.04 Aligned_cols=218 Identities=16% Similarity=0.111 Sum_probs=138.0
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
-.+.|.++.|..+++-++.+..+|.|.+-|.++... .........|.+++||||++.++..+..+++.+-+- +-.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~----eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL----EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce----eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-ccc
Confidence 357999999999999999999999999998877521 122233447999999999999999998887766543 111
Q ss_pred eeccccc-------------cccccCccccccCC----------------CCceecEEEEEEcCCCCEEEEE-----eCC
Q 010883 210 MESLANV-------------TEIHDGLDFSAADD----------------GGYSFGIFSLKFSTDGRELVAG-----SSD 255 (498)
Q Consensus 210 ~~~~~~~-------------~~~~~~~~~~~~~~----------------~~h~~~i~~~~~s~~g~~l~~g-----~~d 255 (498)
.+....+ .-.....+|..... ......=+++.|--||.++|+. ...
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1111111 00000001110000 0011223458999999999883 233
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
..|+|||-+ +.+-..-....+.-.+++|- |.|.++++-. .|+.|.+|..+... .+.....+......+..++|+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccchheeeec
Confidence 789999987 44433333334455789997 6788887754 45679999864222 222222233333448999999
Q ss_pred CCCCEEEE---EeCCCcEEEEeCCCC
Q 010883 333 GDGRYLIS---NGKDQAIKLWDIRKM 355 (498)
Q Consensus 333 ~~~~~l~s---~~~dg~i~iwd~~~~ 355 (498)
.++..|++ ......|++|-+.+.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 99999987 445556999998763
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=8.3e-06 Score=72.37 Aligned_cols=234 Identities=18% Similarity=0.156 Sum_probs=143.4
Q ss_pred EEEEEeCC-CCCeEEEEECCC-eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--
Q 010883 179 VTDTSLSP-DQRHLVYASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-- 254 (498)
Q Consensus 179 v~~~~~sp-~~~~l~~~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-- 254 (498)
...++.+| ....++.+-.-| ...+||..+++........... .| .| ...|++||++|++.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR---HF-----yG------Hg~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR---HF-----YG------HGVFSPDGRLLYTTENDY 72 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC---EE-----ec------CEEEcCCCCEEEEecccc
Confidence 34578899 556667777766 5789999998876544332211 11 12 3589999999988643
Q ss_pred ---CCeEEEEECC-CCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC------------------CCeEEEEcCccccCC
Q 010883 255 ---DDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD------------------DNLCKVWDRRCLNVK 312 (498)
Q Consensus 255 ---dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~------------------dg~i~vwd~~~~~~~ 312 (498)
.|.|-|||.. +-+.+..+..|.-....+.+. +++..|+++.. +.++.+.|.. +
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~----s 147 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR----S 147 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC----C
Confidence 5789999998 566677777777777788887 77766666532 2234444444 5
Q ss_pred CceeEE--e--ccccccEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 313 GKPAGV--L--MGHLEGITFIDSRGDGRYLISNGKDQA-------IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 313 ~~~~~~--~--~~~~~~v~~l~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
+..+.. + ..|.-.|..+++.++|..++..-..|. |.+++...
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--------------------------- 200 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--------------------------- 200 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---------------------------
Confidence 555554 3 236678999999998876665544332 22222111
Q ss_pred ccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC
Q 010883 382 RDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 459 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 459 (498)
.+..+..... ........-++++++++.++++.+- -|.+.+||..+++.+....- ..+..++-.+++
T Consensus 201 ---------~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 201 ---------ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred ---------cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence 1111111100 0111112233456668887766665 67899999999999877653 346677777676
Q ss_pred CeEEEEeCCCcE
Q 010883 460 PMLVSSSWDGDV 471 (498)
Q Consensus 460 ~~l~s~~~Dg~i 471 (498)
+++|.+. |.+
T Consensus 270 -f~~ssG~-G~~ 279 (305)
T PF07433_consen 270 -FLVSSGQ-GQL 279 (305)
T ss_pred -eEEeCCC-ccE
Confidence 6666654 543
No 311
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2e-06 Score=82.52 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=108.5
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
|...|.--+++..+++++.|+.-|.+++|+-..+..... ...+..+.+..+..+++..++|.|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 345566667888899999999999999999887632221 222244467777889999999999999999999887643
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----eeEEEeccCCCeeEEEEe
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG 285 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~ 285 (498)
....... ...+..|...|++++|++++..+++|...|.|..-.+.... ....+....+.|-.+.+.
T Consensus 110 p~~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 3222222 12223477899999999999999999999999988887721 123344556778888774
Q ss_pred CCCCCEEEEee
Q 010883 286 DESGHLIYSGS 296 (498)
Q Consensus 286 ~~~~~~l~s~s 296 (498)
++.+|++..
T Consensus 180 --q~~LLVStl 188 (726)
T KOG3621|consen 180 --QSYLLVSTL 188 (726)
T ss_pred --cceehHhhh
Confidence 344554443
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-06 Score=77.95 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=134.3
Q ss_pred CceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883 232 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 310 (498)
++...|.+++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|++|...|.|.+||++..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~- 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP- 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC-
Confidence 4556899999999776 7888999999999999999998888777 889999998677889999999999999999833
Q ss_pred CCCceeEEecc--ccccEEEEEEc------CCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccc----c------cc
Q 010883 311 VKGKPAGVLMG--HLEGITFIDSR------GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE----W------DY 372 (498)
Q Consensus 311 ~~~~~~~~~~~--~~~~v~~l~~~------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~------~~ 372 (498)
..++..+.+ ...+|..++.- +.+.+|+....+ +..|++................. . +.
T Consensus 269 --~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 269 --EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred --CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 223333332 22344444322 234444444433 56676654333222211110000 0 00
Q ss_pred eeecCCc-----CcccccC----CCCceEEEE-ccCceeEEEEEEEeccc--cCCCCcEEEE-EecCCeEEEEECCCCcE
Q 010883 373 RWMDYPP-----QARDLKH----PCDQSVATY-KGHSVLRTLIRCHFSPV--YSTGQKYIYT-GSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 373 ~~~~~~~-----~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~--~s~~~~~l~~-g~~dg~i~iwd~~~~~~ 439 (498)
-.+.+.+ ..+.+.. ..+..+..- .++.. .........++ -.++.++|+. |...+.+.+||..+.+.
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~G-s~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFG-SKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccC-CcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 0011111 0000000 000011000 00000 00000000011 1234455554 45567899999999999
Q ss_pred EEEeccCCCCeeeeEEcCC-CC-eEEEEeCCCcEEEecCC
Q 010883 440 VAALKYHTSPVRDCSWHPS-QP-MLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 440 ~~~~~~h~~~v~~l~~sp~-~~-~l~s~~~Dg~i~iw~~~ 477 (498)
+.++.- ..+|.+++.... +. +|++-. |..++||..+
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 999874 478888876543 33 666664 5678888754
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.70 E-value=4e-06 Score=85.36 Aligned_cols=236 Identities=17% Similarity=0.198 Sum_probs=138.4
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
..|.++.|..+...++.+...|.|.+-|.++......-.+. .+|.+++|+||+..++..+..+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd-----------------~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD-----------------NGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc-----------------CceEEEeecCCCcEEEEEeCCc
Confidence 57999999999999999999999999988877654443332 2799999999999999998888
Q ss_pred eEEEEECCCCeeeEEEe-----ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883 257 CIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 331 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 331 (498)
++.+-+- +-.++.... ...+..-.+-|. ..... +-|+. |.....+... ..+...... ..+.=++|.|
T Consensus 132 tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwG-rkeTq-frgs~-gr~~~~~~~~---~ek~~~~~~-~~~~~~~IsW 203 (1265)
T KOG1920|consen 132 TLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWG-RKETQ-FRGSE-GRQAARQKIE---KEKALEQIE-QDDHKTSISW 203 (1265)
T ss_pred EEEEEec-cccchhccccccccccccccceeccc-cccee-eecch-hhhccccccc---ccccccchh-hccCCceEEE
Confidence 7766532 222221111 112233445553 21111 12221 2222211110 001001011 1223357899
Q ss_pred cCCCCEEEEEe----CC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883 332 RGDGRYLISNG----KD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 406 (498)
Q Consensus 332 ~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
..||+++++.. .+ +.|++||-.. ...... .+...
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~s----------------------------------------e~~~~ 242 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDREG-ALNSTS----------------------------------------EPVEG 242 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEecccc-hhhccc----------------------------------------Ccccc
Confidence 99999998732 23 7899999762 111100 00111
Q ss_pred EEeccccCCCCcEEEEEe---cCCeEEEEECCC---CcEEEEeccCCCCeeeeEEcCCCCeEEE---EeCCCcEEEecCC
Q 010883 407 CHFSPVYSTGQKYIYTGS---HDSCVYVYDLVS---GEQVAALKYHTSPVRDCSWHPSQPMLVS---SSWDGDVVRWEFP 477 (498)
Q Consensus 407 ~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~~l~s---~~~Dg~i~iw~~~ 477 (498)
..-+.+|-|.|..+++-. .|+.|.+|.-+. |+....+.....+|..++|+.++..|++ ......|++|-+.
T Consensus 243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 112234556788887753 356799998532 2222233334455999999999998887 4455559999875
Q ss_pred C
Q 010883 478 G 478 (498)
Q Consensus 478 ~ 478 (498)
+
T Consensus 323 N 323 (1265)
T KOG1920|consen 323 N 323 (1265)
T ss_pred C
Confidence 4
No 314
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.69 E-value=4.6e-05 Score=69.94 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=99.8
Q ss_pred EEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883 137 SQFSADGSLFVAGFQ-A--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 137 ~~~s~dg~~la~~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~ 213 (498)
-+|.+||+.|+.++. | ..+.+.|+.+++..+-. ...+ .......++|+++.++.......|+-.|+.+.+...+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 368999987776665 4 45777788888443322 2111 1222466789999988877777899999999887666
Q ss_pred ccccccccCccccccCCCCceecEEEEEE--cCCCCEEEEEe----------------------CCCeEEEEECCCCeee
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS----------------------SDDCIYVYDLEANKLS 269 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~g~~l~~g~----------------------~dg~i~vwd~~~~~~~ 269 (498)
...+... +-...| +.|+..++-.- ....|.-.|+.+++..
T Consensus 118 y~~p~~~----------------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 118 YEVPDDW----------------KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EE--TTE----------------EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred EECCccc----------------ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 6655422 222333 33555543321 1234666788888764
Q ss_pred EEEeccCCCeeEEEEeCCCCCEEEEeeC---CC-eEEEEcCccccCCCceeEEecccc--ccEEEEEEcCCCCEEEEEe-
Q 010883 270 LRILAHTSDVNTVCFGDESGHLIYSGSD---DN-LCKVWDRRCLNVKGKPAGVLMGHL--EGITFIDSRGDGRYLISNG- 342 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg-~i~vwd~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~- 342 (498)
..+ .....+..+.|+|.++.+|+-|-. +. .-+||-++.. +.....+..+. ..+..=-|.|||..|.--+
T Consensus 182 ~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 182 VVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp EEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred EEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 433 556778899999988888888654 33 2477776632 22233333232 3344455899998765422
Q ss_pred ----CCCcEEEEeCCC
Q 010883 343 ----KDQAIKLWDIRK 354 (498)
Q Consensus 343 ----~dg~i~iwd~~~ 354 (498)
.+..|.-+|+.+
T Consensus 258 ~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDT 273 (386)
T ss_dssp ETTT--EEEEEE-TTT
T ss_pred cCCCCceEEEeeCCCC
Confidence 233456666655
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=7.6e-05 Score=63.31 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=92.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccC
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
..+++.|+..+.+.--|..+|..+.+..... .|.+-+.. -|++++.|...|.+.+.+..+|.....+...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 3577888888888888998886665543222 33333322 4777999999999999999999765554433211
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 302 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 302 (498)
.+ .....+++..+..|+.|++.+..|..+..++...+...+-..+-+.. +...-|+.+...|.|.
T Consensus 96 -------------k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~-~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 96 -------------KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIA-PGDGSLYAAITAGAVL 160 (354)
T ss_pred -------------cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceec-CCCceEEEEeccceEE
Confidence 11 13445688899999999999999999998887765433333334444 3233344455555554
Q ss_pred EEc
Q 010883 303 VWD 305 (498)
Q Consensus 303 vwd 305 (498)
--.
T Consensus 161 avt 163 (354)
T KOG4649|consen 161 AVT 163 (354)
T ss_pred EEc
Confidence 433
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=3.3e-05 Score=69.46 Aligned_cols=279 Identities=17% Similarity=0.159 Sum_probs=158.2
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEEEECCCCceeccccccccccC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
+.+.|+|.++++.+-...... .-.+..+|+++.+.+++ ..-.|.+||..+-.......++..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 479999999986555433222 23366799999888754 234799999999877666555543111
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 300 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~ 300 (498)
... .....++++.||+++++.. -..+|.|.|+..++.+..+... . +...| |..+.-|.+-+.||.
T Consensus 92 ~~~---------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G-C~~iy-P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 92 QVV---------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G-CWLIY-PSGNRGFSMLCGDGS 158 (342)
T ss_dssp -BS-----------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S-EEEEE-EEETTEEEEEETTSC
T ss_pred eec---------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C-EEEEE-ecCCCceEEEecCCc
Confidence 100 0223468899999888764 3567999999999988777432 1 22233 444566888899999
Q ss_pred EEEEcCccccCCCceeEE----eccccccE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceee
Q 010883 301 CKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 375 (498)
Q Consensus 301 i~vwd~~~~~~~~~~~~~----~~~~~~~v-~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 375 (498)
+.-..+.. .++.... +....+++ ..-++...+..++--+.+|.|+--|+......... .|..
T Consensus 159 l~~v~Ld~---~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-------~~~~--- 225 (342)
T PF06433_consen 159 LLTVTLDA---DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-------PWSL--- 225 (342)
T ss_dssp EEEEEETS---TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-------EEES---
T ss_pred eEEEEECC---CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-------cccc---
Confidence 98888762 2332211 11112222 22334445555666778888888888764311100 0000
Q ss_pred cCCcCc-ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--------C--CeEEEEECCCCcEEEEec
Q 010883 376 DYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------D--SCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 376 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------d--g~i~iwd~~~~~~~~~~~ 444 (498)
+.... ..-..+.+-.+. ++.+..+.|++--. | ..|.++|+.+++.+.++.
T Consensus 226 -~t~~e~~~~WrPGG~Q~~------------------A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~ 286 (342)
T PF06433_consen 226 -LTDAEKADGWRPGGWQLI------------------AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP 286 (342)
T ss_dssp -S-HHHHHTTEEE-SSS-E------------------EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE
T ss_pred -cCccccccCcCCcceeee------------------eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe
Confidence 00000 000000000111 12222222222111 1 148888999999999987
Q ss_pred cCCCCeeeeEEcCCCC-eEEEE-eCCCcEEEecCCCCCCC
Q 010883 445 YHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~-~l~s~-~~Dg~i~iw~~~~~~~~ 482 (498)
. ..++.+++.+.+.+ +|++. ..++.|.+||..+++..
T Consensus 287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 3 34688999999877 66655 45899999999987543
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.6e-07 Score=81.06 Aligned_cols=265 Identities=14% Similarity=0.058 Sum_probs=165.2
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
|+..|+.+ +..-.+++.+++.||.++.|.-..-.......... .|-..|.+++.+-++..+.+.+.
T Consensus 8 hrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-------------aHL~~I~sl~~S~dg~L~~Sv~d 73 (558)
T KOG0882|consen 8 HRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-------------AHLGVILSLAVSYDGWLFRSVED 73 (558)
T ss_pred ccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhH-------------HHHHHHHhhhccccceeEeeccC
Confidence 44455544 33457889999999999999754422222222211 35567889999999999999777
Q ss_pred -CCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCC--CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 255 -DDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 255 -dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
|..++++|+++-..+..+. .-.+.+..+ .++.+. .+-++.-.+|.+.++|-... .......-.-|..+|..+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCC--cCccceecccccCceEEE
Confidence 9999999998765543322 222222222 121111 23333446789999997622 123334445689999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
.+++-+..+++....|.|.-|.....-..+. ....|.+. .+..+..+.. ......
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr-----~~l~~~~K--------------~eTdLy~f~K------~Kt~pt 205 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPR-----TNLNFELK--------------HETDLYGFPK------AKTEPT 205 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCcc-----cccccccc--------------ccchhhcccc------cccCcc
Confidence 9999999999999999999999873100000 00000000 0000000000 001112
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--------------------------------cCC-CCeeeeEEc
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--------------------------------YHT-SPVRDCSWH 456 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------------------~h~-~~v~~l~~s 456 (498)
+..|+|++..+.+-+.|..|++++..+|+.+..+. .|. ..-+.+.|.
T Consensus 206 s~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred ceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 33577899999999999999999999987655432 111 233567888
Q ss_pred CCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 457 PSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 457 p~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
..+++|+-++-=| |++.++.++...
T Consensus 286 es~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 286 ESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred CCCCEEEeeccee-EEEEEeecCeEE
Confidence 8899998887655 788888777544
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=2.1e-05 Score=69.82 Aligned_cols=196 Identities=21% Similarity=0.247 Sum_probs=122.7
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 195 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s- 195 (498)
.....+-+| -.||+||++|++.-. .|.|-|||...+ +.+.-....+.-....+.+.|||+.|+++.
T Consensus 47 ~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 444555666 479999999998643 578999999954 333334444444567788999998888763
Q ss_pred -----------------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC--
Q 010883 196 -----------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-- 256 (498)
Q Consensus 196 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-- 256 (498)
++..+...|..+|+......++.. -|.-.|..+++.++|..++..-..|
T Consensus 119 GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~------------~~~lSiRHLa~~~~G~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 119 GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD------------LHQLSIRHLAVDGDGTVAFAMQYQGDP 186 (305)
T ss_pred CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc------------ccccceeeEEecCCCcEEEEEecCCCC
Confidence 223455566666666554443221 2445799999999997555543332
Q ss_pred -----eEEEEECCCCeeeEEE-------eccCCCeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883 257 -----CIYVYDLEANKLSLRI-------LAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 257 -----~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
.|.+++... ....+ ..-...+-+|+++ .++.++ +|+-.-+.+.+||.. ++..+.... .
T Consensus 187 ~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~----tg~~~~~~~--l 257 (305)
T PF07433_consen 187 GDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAA----TGRLLGSVP--L 257 (305)
T ss_pred CccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECC----CCCEeeccc--c
Confidence 244444332 22222 1345789999998 666655 555567789999987 666655443 3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883 324 EGITFIDSRGDGRYLISNGKDQAIK 348 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~s~~~dg~i~ 348 (498)
..+..++..+++ ++++.+ .|.+.
T Consensus 258 ~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 258 PDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred CceeeeeecCCc-eEEeCC-CccEE
Confidence 456677777666 555444 44433
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1.4e-07 Score=56.94 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=36.1
Q ss_pred ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
+++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=2.1e-06 Score=84.54 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=134.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
++..++.|+-...+..+|+.+.+......... ..|+-++. +++++.+|...|+|.+-|..+.+.+..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC---CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence 44567778777788899998874444322211 13555544 78999999999999999998877655443
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 292 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 292 (498)
.|++.|.++.. .|+.|++++. |.-|.|||++.-+.+.-+.-+.++ .-+.|.|.-...+
T Consensus 215 ----------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 215 ----------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRL 281 (1118)
T ss_pred ----------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceE
Confidence 57777876655 5888998875 455899999887766555444444 5677887778889
Q ss_pred EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
++++..|...+-|..........+..+......+..++++++++.++.|..+|.|.+|.-
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 999999999999954322122223333334456999999999999999999999999983
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=6e-06 Score=80.47 Aligned_cols=140 Identities=15% Similarity=0.214 Sum_probs=96.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-----CCeEEEEECCCeEEEEECCC-Cceecccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGS-GTMESLAN 215 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~s~d~~i~iwd~~~-~~~~~~~~ 215 (498)
+|.++++|+.||+|.|-.+.++....... ...++.+++++|+ .+.+++|+..| +.++.-.= +.....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-- 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-- 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence 49999999999999999998875544332 2337999999998 57889999888 66664221 000000
Q ss_pred ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC------eeEEEEeCCCC
Q 010883 216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD------VNTVCFGDESG 289 (498)
Q Consensus 216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~ 289 (498)
.. ....++|.++.|. |+++|-++.+| |+|||+.+++.+..+...... ...+.|. + .
T Consensus 155 --~l-----------~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~-~ 216 (846)
T KOG2066|consen 155 --VL-----------SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-D-E 216 (846)
T ss_pred --ee-----------ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-C-C
Confidence 00 0234589999996 77888888887 999999999887776533332 3457775 3 4
Q ss_pred CEEEEeeCCCeEEEEcCc
Q 010883 290 HLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 290 ~~l~s~s~dg~i~vwd~~ 307 (498)
..|+.| ..-+|+|..++
T Consensus 217 ~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 217 DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CeEEEe-cCCeEEEEEEe
Confidence 455555 44478888876
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4e-05 Score=75.53 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=125.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCcee-EEEEEeCCCCCeEEEEECCC-----eEEEEECCCCce
Q 010883 137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 210 (498)
Q Consensus 137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~s~d~-----~i~iwd~~~~~~ 210 (498)
-+|++.+..+|.|+.+|.|.+++-. .... .....+... |..+-...+..+|++.+.|+ .++||+++.-+.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s--~~~~--~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS--FQLI--RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc--ceee--ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3577888999999999987776643 2221 122333334 44444444457888877654 599999875432
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCeeeEE--EeccCCCeeEEEEeC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD--LEANKLSLR--ILAHTSDVNTVCFGD 286 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd--~~~~~~~~~--~~~~~~~v~~~~~~~ 286 (498)
.........+.-. .........++.+++.+.+-+.+|+|-.+|.|..+. +...+-.+. ......+|+.+++.
T Consensus 105 n~sP~c~~~~ri~---~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~- 180 (933)
T KOG2114|consen 105 NNSPQCLYEHRIF---TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR- 180 (933)
T ss_pred CCCcceeeeeeee---ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-
Confidence 1111111000000 000111334889999999999999999999999883 222221122 22345799999997
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.++..++.......|.+|.+.. .......+..|...+.|..+++....+++++. ..+.+||...
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~g---r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSG---RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred cCCceeEEEEecceeEEEEecC---CCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 5555533344456899999861 22234456777788999999876665665544 4699999875
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.1e-07 Score=92.95 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=90.6
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC--eEEEEcCccc
Q 010883 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCL 309 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~ 309 (498)
.|+...+|++|+-+.++|++|+..|.|+++++.+|........|.++|+.+.-+ .++..+++.+.-. ...+|++..
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s- 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASS- 1176 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhcccc-
Confidence 456689999999999999999999999999999999999999999999999987 6666666554433 577899862
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
.+.+.+.+. .-.++.|+.....-+.|.......+||+.+...
T Consensus 1177 --~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1177 --TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred --ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 344444443 234678887655555566666799999998543
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.48 E-value=0.00036 Score=68.97 Aligned_cols=278 Identities=14% Similarity=0.116 Sum_probs=153.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCC---CceeEE--EEEeCCCCCeEEEEECCCeEEEEECCCCceecccccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVT--DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 217 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~---~~~~v~--~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~ 217 (498)
+..++.++.++.|.-.|..+|+.+.+...... ....+. .+... ++..++.++.++.|.-+|.++|+........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566677789999999999866655432211 000010 01111 2267778888999999999999887665543
Q ss_pred ccccCccccccCCCCceecEE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCeeeEEEeccCCC---------
Q 010883 218 EIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSD--------- 278 (498)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~i~-~~~~s~~g~~l~~g~---------~dg~i~vwd~~~~~~~~~~~~~~~~--------- 278 (498)
.... ....+. +..+. + ..++.++ .+|.|+.+|..+++.+-++......
T Consensus 140 ~~~~-----------~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 140 DQVP-----------PGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred CCcC-----------cceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 2100 000010 11111 2 3455543 3678999999999987766432110
Q ss_pred -----------e-eEEEEeCCCCCEEEEeeCCC------------------eEEEEcCccccCCCceeEEeccccccEE-
Q 010883 279 -----------V-NTVCFGDESGHLIYSGSDDN------------------LCKVWDRRCLNVKGKPAGVLMGHLEGIT- 327 (498)
Q Consensus 279 -----------v-~~~~~~~~~~~~l~s~s~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~~~v~- 327 (498)
+ ...++. +.+.+++.++.++ .|.-+|.. +++.+-.+..-.....
T Consensus 207 ~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~ 281 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWD 281 (488)
T ss_pred CcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCcc
Confidence 1 122332 3456777777665 68888887 6666655432111100
Q ss_pred -----EEEEc----CCCC---EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883 328 -----FIDSR----GDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 395 (498)
Q Consensus 328 -----~l~~~----~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
...+. -++. .++.++.+|.+...|.++++..-.....
T Consensus 282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------------------------- 330 (488)
T cd00216 282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------------------------- 330 (488)
T ss_pred cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------------------
Confidence 00110 1333 5778888999999999885533221100
Q ss_pred ccCceeEEEEEEEeccccCCCCcEEEE------------------EecCCeEEEEECCCCcEEEEeccCC--------CC
Q 010883 396 KGHSVLRTLIRCHFSPVYSTGQKYIYT------------------GSHDSCVYVYDLVSGEQVAALKYHT--------SP 449 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------g~~dg~i~iwd~~~~~~~~~~~~h~--------~~ 449 (498)
...+..+| ..++. ...+|.|.-.|+.+|+.+....... .+
T Consensus 331 ------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 ------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011111 11221 2246778888888888877665321 11
Q ss_pred eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 450 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 450 v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
...-.....+..|+.++.||.|+.+|..+++....
T Consensus 397 ~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 397 HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred ccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 11111112456788888999999999988876544
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.48 E-value=0.0001 Score=69.70 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=62.6
Q ss_pred cCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 140 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 140 s~dg~~la~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
|||+++++... ..+.+.|||+.++.... +... ...+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 68999888743 24678999999973322 2111 34688899999999999886 57899999888755
Q ss_pred ecccccccc--ccCcc-ccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883 211 ESLANVTEI--HDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGS 253 (498)
Q Consensus 211 ~~~~~~~~~--~~~~~-~~~~~~~~h~~~i~~~~~s~~g~~l~~g~ 253 (498)
..+..-... ..+.. +..... --..-..+.|||||++||...
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEE--v~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEE--VFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp EESES--TTTEEESB--HHHHHH--TSSSSBSEEE-TTSSEEEEEE
T ss_pred EEeccccceeEEcCccceecccc--ccccccceEECCCCCEEEEEE
Confidence 444332200 00000 000000 000124588999999888754
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.48 E-value=3.6e-06 Score=79.67 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=64.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
.+.+.|.|++++|+...|+.|+.||.|.+||...+... .. ...-.++.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--ee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 56889999999999999999999999999999876222 11 22336889999999999999999999999998755
Q ss_pred ce
Q 010883 209 TM 210 (498)
Q Consensus 209 ~~ 210 (498)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 43
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.46 E-value=9.1e-05 Score=64.93 Aligned_cols=211 Identities=15% Similarity=0.159 Sum_probs=116.4
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
.+.+.+....+..++|+|+.+ ++++....+.|..++.+ |+.+.+. ...+. +..-.|++.-++.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-PLDGF-GDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-E-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-eCCCC-CCceeEEEECCCEEEEEEcCCCcEEE
Confidence 345666777899999999865 55566667888888874 5555554 33332 35788889888877776656899999
Q ss_pred EECCCCce-eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeeeEE--Ee---
Q 010883 203 VDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLR--IL--- 273 (498)
Q Consensus 203 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~---~~~~~~--~~--- 273 (498)
+++..... .......... +.+ ...+...+-.++|.+.++.|+++-...-..+|.+.. ...... ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~--l~~----~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKIS--LGF----PNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEE----TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEeccccccchhhceEEe--ccc----ccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 99854321 1111111110 001 112334689999999888787777766666666543 111111 11
Q ss_pred ---ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc---------ccEEEEEEcCCCCEEEEE
Q 010883 274 ---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISN 341 (498)
Q Consensus 274 ---~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~s~ 341 (498)
.....+.++++.|..+++++....+..|..+|. .++++..+.-.. ...-.|++.++|++.+++
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 234568899999888999999999999999996 566555443221 246789999999766554
Q ss_pred eCCCcEEE
Q 010883 342 GKDQAIKL 349 (498)
Q Consensus 342 ~~dg~i~i 349 (498)
.-+..++
T Consensus 240 -EpNlfy~ 246 (248)
T PF06977_consen 240 -EPNLFYR 246 (248)
T ss_dssp -TTTEEEE
T ss_pred -CCceEEE
Confidence 4443433
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.44 E-value=4.9e-05 Score=74.03 Aligned_cols=257 Identities=16% Similarity=0.182 Sum_probs=135.4
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeecCCCc----------eeEE-----------------EEEeC---CCCCeEEEEE
Q 010883 146 FVAGFQASQIRIYDVERGWKIQKDILAKSLR----------WTVT-----------------DTSLS---PDQRHLVYAS 195 (498)
Q Consensus 146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------~~v~-----------------~~~~s---p~~~~l~~~s 195 (498)
|.+|+..|.|+|+-+.+...+..+....... ..|. .+++. .||++|..-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 6678888999999888875555433221100 0010 01111 2677887766
Q ss_pred C-CCeEEEEECCCCceeccccccccccC--ccccccCCCCceecEEE-----EEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 010883 196 M-SPIVHIVDVGSGTMESLANVTEIHDG--LDFSAADDGGYSFGIFS-----LKFSTDGRELVAG-SSDDCIYVYDLEAN 266 (498)
Q Consensus 196 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~-----~~~s~~g~~l~~g-~~dg~i~vwd~~~~ 266 (498)
. +..|...+++.-++..+..++..... +.+.. ..++..|.+ +=+.|||+.+... -..+.+.+.|.++.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~---~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm 225 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQK---IPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM 225 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccc---cCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence 4 45666666665555444444432211 11110 012222322 3355677755433 23567888888887
Q ss_pred eeeEEEeccCCCeeEEEEeCCCCCEEEEee----------------------------------------CCCeEEEEcC
Q 010883 267 KLSLRILAHTSDVNTVCFGDESGHLIYSGS----------------------------------------DDNLCKVWDR 306 (498)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s----------------------------------------~dg~i~vwd~ 306 (498)
+...++.--. ....+.++ +++.++++.+ .++.|.+.|.
T Consensus 226 eV~~qV~Vdg-npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~ 303 (635)
T PRK02888 226 EVAWQVMVDG-NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG 303 (635)
T ss_pred eEEEEEEeCC-CcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence 7666654322 33455665 4566665554 1234566665
Q ss_pred ccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883 307 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 385 (498)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (498)
+.....+..+.....-......+.++|||+++++++ .+.++.|.|+.+......-..
T Consensus 304 ~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~---------------------- 361 (635)
T PRK02888 304 RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI---------------------- 361 (635)
T ss_pred CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----------------------
Confidence 410000122222222334567899999999987665 488999999988542111000
Q ss_pred CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
.+.+..+....... . ....+|+++|+...+-.-|..|..||+..
T Consensus 362 ~~~~~vvaevevGl--G-----PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGL--G-----PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCC--C-----cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 00011111111100 0 01225677888777778899999999876
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=0.00031 Score=59.77 Aligned_cols=142 Identities=19% Similarity=0.048 Sum_probs=94.7
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 188 ~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
..+++.|+..+.+.-.|..+|+......... .|.+-+.- -|.+++.|+..|.+++.+.++|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence 3567778888899999999988765544332 22222222 46789999999999999999998
Q ss_pred eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010883 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 347 (498)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i 347 (498)
....+.. ...|.+-+-.++++.++..|+.|++.+..|.+ ....+...+...+...+-+..|-...|..+...|.+
T Consensus 85 ~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 85 QIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred heeeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 7766643 23444444446789999999999999999998 666666655433333344455533345555555555
Q ss_pred EEEeC
Q 010883 348 KLWDI 352 (498)
Q Consensus 348 ~iwd~ 352 (498)
.--..
T Consensus 160 lavt~ 164 (354)
T KOG4649|consen 160 LAVTK 164 (354)
T ss_pred EEEcc
Confidence 44443
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.5e-05 Score=78.19 Aligned_cols=110 Identities=14% Similarity=0.224 Sum_probs=83.2
Q ss_pred EEEEEcCCCCEEEEEE----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 135 YVSQFSADGSLFVAGF----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
+-..|+|...++|+++ ..|.|.||- ++|++-. ..... ..+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-ccccc---eehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3457899888888876 367888885 4454222 11111 2467899999999999998899999999877654
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 265 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 265 (498)
..... .|+.+|..+.||++|..++++..-|.|.+|....
T Consensus 94 htv~~----------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 HTVVE----------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeecc----------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 33322 4777999999999999999999999999998763
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.41 E-value=0.00089 Score=60.51 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=95.0
Q ss_pred EEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCCce----eEEEEEeCCCCCeEEEEEC--CC
Q 010883 135 YVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASM--SP 198 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~s~--d~ 198 (498)
--+..||||+.+++++ ..-.|.+||..+-.....+.....++. ....++++.|++++++... ..
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999888754 234699999999876666655544222 2234678999998887644 45
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEe----
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL---- 273 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~~~~---- 273 (498)
.|.|.|+..++.......+. +..+--+.+ +-+.+.|.||.+.-..+. .|+...+..
T Consensus 119 SVtVVDl~~~kvv~ei~~PG------------------C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG------------------CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS------------------EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred eEEEEECCCCceeeeecCCC------------------EEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 79999999988766555442 222222222 357888899999888887 455443221
Q ss_pred ccCCCe-eEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 274 AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 274 ~~~~~v-~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
....++ ..-++. ..+..++--+.+|.|+--|+.
T Consensus 180 ~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 180 PDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp TTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEET
T ss_pred CCCcccccccceE-CCCCeEEEEecCCEEEEEecc
Confidence 111222 233443 344555667889999998886
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.5e-05 Score=74.59 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=105.4
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
.++++++ .+++++.|+-+|.|++.+....- ...+. |+.. ..+|.++++|+.||.
T Consensus 41 ~is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~-----------------~s~~------~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 41 AISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFD-----------------HSSS------ILEGEYVASCSDDGK 94 (846)
T ss_pred HHHHHHh--hcceeeeccccceEEEEecCCcc-ccccc-----------------cccc------ccCCceEEEecCCCc
Confidence 4555655 46789999999999999876532 11111 1111 458999999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEeCC----CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDE----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
|.|-.+-+.+...++ ....++.+++++|. ....+++|+.-| +.++..+-.+ ....+ .+..-.++|.++.|.
T Consensus 95 v~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-nk~~v-~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-NKDSV-VLSEGEGPIHSIKWR- 169 (846)
T ss_pred EEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-Cccce-eeecCccceEEEEec-
Confidence 999999888876665 45678999999743 256788999988 8887765332 11222 455567899999995
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCC
Q 010883 334 DGRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
|++||=++.+| |++||....+.
T Consensus 170 -g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 170 -GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred -CcEEEEecCCC-cEEEeccccce
Confidence 56777777666 99999987543
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.36 E-value=1.7e-05 Score=75.16 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=79.8
Q ss_pred EEEEEEcC-CCCEEEEE----eCCCe----EEEEECCCCeeeE---EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883 237 IFSLKFST-DGRELVAG----SSDDC----IYVYDLEANKLSL---RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 304 (498)
Q Consensus 237 i~~~~~s~-~g~~l~~g----~~dg~----i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vw 304 (498)
..++.|+. +...+.+. +.+|. -++|++..++... +-....+.|.|++++ ++...|+.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEEEE
Confidence 45667775 33444443 22333 4567776654321 112677899999998 788899999999999999
Q ss_pred cCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
|.. .+ +..+....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 287 D~~----~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTT----RG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcC----CC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 985 22 2233334456789999999999999999999999998753
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.33 E-value=0.00016 Score=69.14 Aligned_cols=183 Identities=25% Similarity=0.296 Sum_probs=109.7
Q ss_pred cEEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe--EEEEcCccc
Q 010883 236 GIFSLKFSTDGRELVAGS---SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--CKVWDRRCL 309 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~---~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~--i~vwd~~~~ 309 (498)
.+..-+|+|+++.++... .. ..++++|+++++....+. ..+.-...+|+|....++++...||. |.+.|+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~-- 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD-- 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC--
Confidence 567778999998765542 22 469999999887655443 34444567898555555666677776 5555664
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
++....+..-.+.-+.-.|+|||+.|+-.+. .|. |.++|......
T Consensus 271 ---~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----------------------------- 318 (425)
T COG0823 271 ---GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----------------------------- 318 (425)
T ss_pred ---CCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------------------------
Confidence 2223334433333346679999999886653 444 55555544211
Q ss_pred CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-Ce--EEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEE
Q 010883 387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SC--VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 463 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~--i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 463 (498)
...++.... ...|.+||||++|+..+.. |. |.+.|+.++..+..+. +......-+|.++++.++
T Consensus 319 ----~riT~~~~~--------~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 319 ----TRLTFSGGG--------NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred ----eEeeccCCC--------CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 111111111 1267899999999987753 44 7777777666444443 333444567888887665
Q ss_pred EEe
Q 010883 464 SSS 466 (498)
Q Consensus 464 s~~ 466 (498)
..+
T Consensus 386 ~~s 388 (425)
T COG0823 386 FSS 388 (425)
T ss_pred Eec
Confidence 544
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=8.5e-05 Score=73.29 Aligned_cols=203 Identities=11% Similarity=0.145 Sum_probs=126.1
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC-eeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCC-
Q 010883 241 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG- 313 (498)
Q Consensus 241 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~- 313 (498)
+|++.+..++.|+.+|.|.+++- +-+.+..+..+... |..+.. ....++|++.+.|+ .+++||+...+.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46778888999999999988874 23444666666666 444433 24446777777664 58999997553222
Q ss_pred -cee--EEecc-----ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883 314 -KPA--GVLMG-----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 385 (498)
Q Consensus 314 -~~~--~~~~~-----~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (498)
..+ ..+.. ...++.+++++.+-+.+|+|-.+|.|..+.=.-...
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD---------------------------- 159 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD---------------------------- 159 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc----------------------------
Confidence 222 11222 245788999999999999999999998885322110
Q ss_pred CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE-EEEeccCCCCeeeeEEcCCCCeEEE
Q 010883 386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVS 464 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s 464 (498)
+..+.-..|.....+....+. .+++.++-......|.+|.+....+ ...+..|..+++|.++++....++.
T Consensus 160 ----rgsr~~~~~~~~~pITgL~~~----~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 160 ----RGSRQDYSHRGKEPITGLALR----SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred ----cccceeeeccCCCCceeeEEe----cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence 111111122222233333332 2555533333445699999874442 4557788889999999987765665
Q ss_pred EeCCCcEEEecCCCCCCC
Q 010883 465 SSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 465 ~~~Dg~i~iw~~~~~~~~ 482 (498)
++. ..|.+|+.++.+..
T Consensus 232 a~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 232 AGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred ecC-ceEEEEcCCCccee
Confidence 553 46899998765543
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=9e-05 Score=66.71 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=65.2
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVH 201 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~ 201 (498)
.+.+..|...|..++|||..+ ++..++.+.+|+|.|+.+......... + ..+.+++|.-|.. +|..|...|.|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---Y-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---c-CCceeeeeccCCcceeEEeccCceEE
Confidence 346778899999999999987 788899999999999998754443332 2 4799999998765 555666799999
Q ss_pred EEECCCCc
Q 010883 202 IVDVGSGT 209 (498)
Q Consensus 202 iwd~~~~~ 209 (498)
|||+...+
T Consensus 262 vyD~R~~~ 269 (463)
T KOG1645|consen 262 VYDMRQPE 269 (463)
T ss_pred EEEccCCC
Confidence 99998654
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.27 E-value=0.0022 Score=61.63 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 135 YVSQFSADGSLFVAGFQA-----------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~d-----------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
+.++.+|.|.-+|....+ ..|.||+.. |..+....... +.|.++.|+.+.. |++...||.++++
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~wt~~e~-LvvV~~dG~v~vy 106 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGWTDDEE-LVVVQSDGTVRVY 106 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEECCCCe-EEEEEcCCEEEEE
Confidence 345677777777766444 159999986 44555543333 5899999988655 5566789999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEe---ccC---
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL---AHT--- 276 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~---~~~--- 276 (498)
|+.... .+.+....... .-....+....+..+| ++.-..++.+++.+-.... ....+. ...
T Consensus 107 ~~~G~~---~fsl~~~i~~~-------~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~ 174 (410)
T PF04841_consen 107 DLFGEF---QFSLGEEIEEE-------KVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKF 174 (410)
T ss_pred eCCCce---eechhhhcccc-------CcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccc
Confidence 987443 11111110000 0011123333444456 3333445555554322221 111111 100
Q ss_pred ---CCeeE-EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 277 ---SDVNT-VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 277 ---~~v~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
..... ..+. .+....+....++.+.+.+-. .... + ...+++..|++||+++++|.-..+|.+.+...
T Consensus 175 ~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 175 HWWPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred ccccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 01111 1232 334444444555566644432 1111 1 12468999999999999999999999988875
Q ss_pred CC
Q 010883 353 RK 354 (498)
Q Consensus 353 ~~ 354 (498)
.-
T Consensus 246 Df 247 (410)
T PF04841_consen 246 DF 247 (410)
T ss_pred cc
Confidence 43
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.25 E-value=0.00095 Score=63.27 Aligned_cols=252 Identities=16% Similarity=0.166 Sum_probs=130.7
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec-cccccc------------cccCc-ccccc---C----------C
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-LANVTE------------IHDGL-DFSAA---D----------D 230 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~-~~~~~~------------~~~~~-~~~~~---~----------~ 230 (498)
.|+.+.|+++..-|+++...|.|.||.....+... ...... ....+ +.... . .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999999876543221 000000 00000 00000 0 0
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--c------cCCCeeEEEEe----CCCC---CEEEEe
Q 010883 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--A------HTSDVNTVCFG----DESG---HLIYSG 295 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~----~~~~---~~l~s~ 295 (498)
....++|++++.|.-| ++++|..+|.+.|.|++....+..-. . ....|+++.|+ ..++ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1236789999998555 89999999999999998887766532 1 23467888886 1222 478899
Q ss_pred eCCCeEEEEcCccccCCCcee----EEeccccccEEEEE-EcCC-C-------------------CEEEEEeCCCcEEEE
Q 010883 296 SDDNLCKVWDRRCLNVKGKPA----GVLMGHLEGITFID-SRGD-G-------------------RYLISNGKDQAIKLW 350 (498)
Q Consensus 296 s~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~v~~l~-~~~~-~-------------------~~l~s~~~dg~i~iw 350 (498)
...|.+.+|.+.... .+... .....+.++|..+. ++.+ | +.++....+..++++
T Consensus 162 Tn~G~v~~fkIlp~~-~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSS-NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-G-GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCCEEEEEEecCC-CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 999999999875211 11111 11123445555544 2211 0 123334445668887
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc-CCCCcEEEEEecCCeE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY-STGQKYIYTGSHDSCV 429 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i 429 (498)
...+.+ ...+.+ ....... .+.+-+.. ...+..|++-..+|.|
T Consensus 241 ~~~~~k---------------------------------~~~K~~-~~~~~~~--~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 241 KPPKSK---------------------------------GAHKSF-DDPFLCS--SASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -TT------------------------------------EEEEE--SS-EEEE--EEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred eCCCCc---------------------------------ccceee-ccccccc--eEEEEeecccCCceEEEEEECCCcE
Confidence 776522 111222 1111111 11110000 1246678888899999
Q ss_pred EEEECCCCcEEEEeccCC----CCeeeeEEcCCCCeEEEEeC
Q 010883 430 YVYDLVSGEQVAALKYHT----SPVRDCSWHPSQPMLVSSSW 467 (498)
Q Consensus 430 ~iwd~~~~~~~~~~~~h~----~~v~~l~~sp~~~~l~s~~~ 467 (498)
++|.+..-+.+..++... ..+...+++++|..++-.+.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred EEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 999999999888876432 34567788999997766654
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.24 E-value=4.5e-07 Score=85.81 Aligned_cols=205 Identities=14% Similarity=0.180 Sum_probs=130.1
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeee--EEEeccCCCeeEEEEeCCCCCEEEEee----CCCeEEEEcCc
Q 010883 236 GIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDRR 307 (498)
Q Consensus 236 ~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~s----~dg~i~vwd~~ 307 (498)
.+.|+++.-+ ...+++|..+|.|-+-.+....-. ....++..++++++|++-+.+.|++|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4667776653 347889999999999887654322 334578889999999977778888874 35679999997
Q ss_pred cccCCCceeEEecc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 308 CLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 308 ~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
..-...+....+.+ ......+++|-.+.+++++|.....+.++|++......
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--------------------------- 190 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--------------------------- 190 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------------------------
Confidence 44211111112222 34556688898889999999999999999998421110
Q ss_pred CCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEEecCCeEEEEEC-CCC-cEEEEeccCC----CCeeeeEEcCCC
Q 010883 387 PCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDL-VSG-EQVAALKYHT----SPVRDCSWHPSQ 459 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~-~~~-~~~~~~~~h~----~~v~~l~~sp~~ 459 (498)
..+.+ . .+-....+| .+.|+++-. ||.|.+||. ..- .++..+.... ..+..++|+|..
T Consensus 191 ---~svnT---k--------~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 191 ---SSVNT---K--------YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred ---hhhhh---h--------hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 00000 0 000112222 456776655 999999994 222 2222222112 248999999976
Q ss_pred C-eEEEEeC-CCcEEEecCCCCCCC
Q 010883 460 P-MLVSSSW-DGDVVRWEFPGNGEA 482 (498)
Q Consensus 460 ~-~l~s~~~-Dg~i~iw~~~~~~~~ 482 (498)
+ .+++... .++|+.+++......
T Consensus 256 tglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred cchhhhhccCcceEEEecccccCCc
Confidence 6 5666654 478999998755443
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.22 E-value=0.00037 Score=65.95 Aligned_cols=207 Identities=12% Similarity=0.113 Sum_probs=108.3
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCC----------------ceeEEEEEeCCCCCeEEEE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL----------------RWTVTDTSLSPDQRHLVYA 194 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~sp~~~~l~~~ 194 (498)
...+....|||||+.+|... ++.|.+++..++...+. ...+. -..-..+-||||+++||..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 56788999999999999885 67899999888733322 22220 0123567899999999986
Q ss_pred ECCC-eE---EEEECCCCce----eccccccc---cc-----------cCc--ccccc-CCCCceecEEEEEEcCCCCEE
Q 010883 195 SMSP-IV---HIVDVGSGTM----ESLANVTE---IH-----------DGL--DFSAA-DDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 195 s~d~-~i---~iwd~~~~~~----~~~~~~~~---~~-----------~~~--~~~~~-~~~~h~~~i~~~~~s~~g~~l 249 (498)
..|. .| .+-+...... ......+. .. .+. ..... ....-..-+..+.|.++++.|
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 5432 22 2222211110 00000000 00 000 00000 000123468899999999844
Q ss_pred EEEeC--C---CeEEEEECCCCeeeEEEec-cCCC---eeEEEEe-CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe
Q 010883 250 VAGSS--D---DCIYVYDLEANKLSLRILA-HTSD---VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 319 (498)
Q Consensus 250 ~~g~~--d---g~i~vwd~~~~~~~~~~~~-~~~~---v~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 319 (498)
+..-. + ..+.++|..++.....+.. .... -....|. +.+..+|.....||.-+||-+.. .+.....+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~---~~~~~~~l 275 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL---DGGKPRQL 275 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET---TSSEEEES
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc---cccceecc
Confidence 44332 2 2477788877765433332 2222 2355554 56677777777888666655441 33444566
Q ss_pred ccccccEEE-EEEcCCCCEEE-EEeC
Q 010883 320 MGHLEGITF-IDSRGDGRYLI-SNGK 343 (498)
Q Consensus 320 ~~~~~~v~~-l~~~~~~~~l~-s~~~ 343 (498)
....-.|+. +.++++++.|+ ++..
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred ccCceeecccceEcCCCCEEEEEecC
Confidence 655556744 66788877655 4443
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=4e-07 Score=86.15 Aligned_cols=205 Identities=17% Similarity=0.173 Sum_probs=131.3
Q ss_pred ceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEE----CCCeEEEEEC
Q 010883 133 RAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYAS----MSPIVHIVDV 205 (498)
Q Consensus 133 ~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s----~d~~i~iwd~ 205 (498)
.+.|+++.-+ ..+++.|..+|.|.+-.+...... ......++....++++|++ |.+.||+|- .|..+.|||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4566766554 358889999999999887654222 1123345556899999999 566777663 2557999999
Q ss_pred CCCce--eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 206 GSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 206 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
.++-. ..... |.. +.-....+++|..+.+++.+|.....+.++|++.... ....-.+..+..+.
T Consensus 137 ~s~ltvPke~~~---------fs~----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 137 NSLLTVPKESPL---------FSS----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGIT 202 (783)
T ss_pred ccccCCCccccc---------ccc----ccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccce
Confidence 87632 11111 111 0112455889998999999999999999999974322 11222344667778
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcC-ccccCCCceeEEeccc----cccEEEEEEcCCCC-EEEEEeC-CCcEEEEeCCCCC
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDR-RCLNVKGKPAGVLMGH----LEGITFIDSRGDGR-YLISNGK-DQAIKLWDIRKMS 356 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~-~l~s~~~-dg~i~iwd~~~~~ 356 (498)
..|-.++++++-. ||.|.+||. +. ...++..+... ...+..++|.|... .+++... .++|+++|+....
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 8755788886655 999999993 31 12222222222 22488999998532 3445544 4789999988643
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.19 E-value=0.00072 Score=64.98 Aligned_cols=183 Identities=16% Similarity=0.082 Sum_probs=95.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
........+.++|+|++++++ .||...||....... .. .+.-..++|.+.++ +|+-...+.|.|+.--..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-k~-------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-KA-------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-EE-------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-cc-------cCceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence 334456789999999999985 577888888544311 11 12455688999555 566666788999643222
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 288 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 288 (498)
........+. .+..+-. |..|...+.+ .|.+||+.+++.+.++... +|..+.|+ ++
T Consensus 100 ~~~k~i~~~~-----------------~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~ 155 (443)
T PF04053_consen 100 EVVKSIKLPF-----------------SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS-DD 155 (443)
T ss_dssp -TT-----SS------------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE--TT
T ss_pred ccceEEcCCc-----------------ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE-CC
Confidence 2211122111 1222322 7777766554 8999999999999888533 38999998 78
Q ss_pred CCEEEEeeCCCeEEEEcCccc-------cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q 010883 289 GHLIYSGSDDNLCKVWDRRCL-------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 349 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~i 349 (498)
+++++..+.+ .+.+++.... ..-......+......|.+..|..+ .++-.... .|+.
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 8888888755 6777765311 0000133333333567888888765 44433333 5555
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.18 E-value=0.0052 Score=60.89 Aligned_cols=259 Identities=14% Similarity=0.105 Sum_probs=136.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEE---------CCCeEEEEECCCCceec
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYAS---------MSPIVHIVDVGSGTMES 212 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s---------~d~~i~iwd~~~~~~~~ 212 (498)
..++.++.++.|.-+|..+|+.+.+......... -..+.-+| .+..++.++ .++.+..+|..+|+...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~-~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP-GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc-ceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 5777788899999999999977766443221000 00111122 124444443 36789999999998776
Q ss_pred cccccccccCccccccCCC----Cce-ecE-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCee
Q 010883 213 LANVTEIHDGLDFSAADDG----GYS-FGI-FSLKFSTDGRELVAGSSDD------------------CIYVYDLEANKL 268 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~----~h~-~~i-~~~~~s~~g~~l~~g~~dg------------------~i~vwd~~~~~~ 268 (498)
......... ..+...... .+. ..+ ...++.+.+..++.++.++ .|.-+|..+++.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDP-NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCc-CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 554421110 000000000 000 011 1245555566777777665 799999999998
Q ss_pred eEEEeccCCCe------eEEEEe---CCCCC---EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883 269 SLRILAHTSDV------NTVCFG---DESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 336 (498)
Q Consensus 269 ~~~~~~~~~~v------~~~~~~---~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 336 (498)
.-.+..-.... ....+. +.++. .++.++.+|.+...|.+ +++.+...... ...++.+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~----tG~~~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT----TGKLISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC----CCcEeeEeEee---ccccccCC--c
Confidence 77654211111 111111 11232 67888899999999998 66666544311 11223333 2
Q ss_pred EEEEE------------------eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883 337 YLISN------------------GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 398 (498)
Q Consensus 337 ~l~s~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
.++.+ ..+|.+.-.|+.+.+..-........ ....+...
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~-----------------------~~~~~g~~ 396 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR-----------------------DSWNIGFP 396 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc-----------------------cccccCCc
Confidence 23222 13456666676664322211100000 00000000
Q ss_pred ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc
Q 010883 399 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 445 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 445 (498)
. +.......+.+|++++.||.|+.+|..+|+.+.+++.
T Consensus 397 ~---------~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 H---------WGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred c---------cCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0 0000001467899999999999999999999988764
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00053 Score=65.65 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=95.8
Q ss_pred eeEEEEEeCCCCCeEEEEEC---C-CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 177 WTVTDTSLSPDQRHLVYASM---S-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~---d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
..+..-+|+|+++.++..+. . ..+.++++.+++......... .-..-+|+|||+.|+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-----------------~~~~P~fspDG~~l~f~ 255 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-----------------NNGAPAFSPDGSKLAFS 255 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-----------------ccCCccCCCCCCEEEEE
Confidence 36777889999988776532 3 469999999887655554221 23346899999988766
Q ss_pred e-CCC--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCe--EEEEcCccccCCCceeEEeccccccE
Q 010883 253 S-SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGI 326 (498)
Q Consensus 253 ~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v 326 (498)
. .|| .|+++|+..+.. .++....+.-..-.|+ |+|+.++.. +..|. |.++++. +.....+......-
T Consensus 256 ~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~-----g~~~~riT~~~~~~ 328 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLE-----GSQVTRLTFSGGGN 328 (425)
T ss_pred ECCCCCccEEEEcCCCCcc-eecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCC-----CCceeEeeccCCCC
Confidence 4 344 477888887774 3354333333466787 566655544 45554 5555553 33333443333333
Q ss_pred EEEEEcCCCCEEEEEeCC-Cc--EEEEeCCC
Q 010883 327 TFIDSRGDGRYLISNGKD-QA--IKLWDIRK 354 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~d-g~--i~iwd~~~ 354 (498)
..-.|+|||++|+..+.. |. |.+.|+.+
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 377899999999877643 44 44555443
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.14 E-value=0.0097 Score=57.90 Aligned_cols=202 Identities=19% Similarity=0.194 Sum_probs=109.5
Q ss_pred ceEEEEEcCCCCEEEEE-ECCC----eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC---------
Q 010883 133 RAYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------- 198 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~-~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--------- 198 (498)
.+...++||||++||.+ +..| .|+++|+.+|+.+...+... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999999865 3333 59999999996655432221 122399999999887766433
Q ss_pred --eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC----ee
Q 010883 199 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---D-DCIYVYDLEAN----KL 268 (498)
Q Consensus 199 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---d-g~i~vwd~~~~----~~ 268 (498)
.|..|.+.+.......-..... .......+..++|+++|+.... + ..+++.++..+ ..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPD------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TT------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred CcEEEEEECCCChHhCeeEEeecC------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 4788888776543111111111 1112667889999998876543 2 45888898875 23
Q ss_pred eEEEeccCCCee-EEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-C
Q 010883 269 SLRILAHTSDVN-TVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-K 343 (498)
Q Consensus 269 ~~~~~~~~~~v~-~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~ 343 (498)
...+......+. .+... ++.+++... ..+.|...++..... ......+..+...+.-..+...+.+|+... .
T Consensus 269 ~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp EEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEE
T ss_pred cEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEE
Confidence 344444444443 34432 343444332 235666667652211 112335555555433333333444555443 3
Q ss_pred CC--cEEEEeCC
Q 010883 344 DQ--AIKLWDIR 353 (498)
Q Consensus 344 dg--~i~iwd~~ 353 (498)
++ .|+++++.
T Consensus 346 ~~~~~l~v~~~~ 357 (414)
T PF02897_consen 346 NGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEEEETT
T ss_pred CCccEEEEEECC
Confidence 43 48888887
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.11 E-value=0.0018 Score=61.37 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=120.1
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE----------------------------------------EEEeec
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------------------------------------QKDILA 172 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~----------------------------------------~~~~~~ 172 (498)
.|+.+.|+++..-||+|...|.|.||....++.. ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999876432111 111222
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-----CC-
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG- 246 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~g- 246 (498)
+...++|++++.| |=-++|.|..+|.+.|.|++....+....+.+.. ........|+++.|.- |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~--------~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF--------LSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------T-SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc--------cccccccCeeEEEEEEEecCCCcc
Confidence 2335689999986 6668999999999999999888776654444300 0011233577777763 33
Q ss_pred --CEEEEEeCCCeEEEEECC--C-Ceee----EEEeccCCCeeEEEEe-CCCC-------------------CEEEEeeC
Q 010883 247 --RELVAGSSDDCIYVYDLE--A-NKLS----LRILAHTSDVNTVCFG-DESG-------------------HLIYSGSD 297 (498)
Q Consensus 247 --~~l~~g~~dg~i~vwd~~--~-~~~~----~~~~~~~~~v~~~~~~-~~~~-------------------~~l~s~s~ 297 (498)
-.+++|+..|.+.+|.+- . +... .....+.+.|..+... ...+ +-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 378999999999999774 1 2111 1122456666666532 1111 12334445
Q ss_pred CCeEEEEcCccccCCCceeEEeccccccEEEEEE-----cCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883 298 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS-----RGDGRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 298 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
+..++++... ..+..............+.+ ...+..|++-..+|.|++|.+...+.
T Consensus 234 e~~irv~~~~----~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 234 ESDIRVFKPP----KSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp SSEEEEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred ccceEEEeCC----CCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 6789999886 44444433322122233334 23566788889999999999987543
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.06 E-value=0.014 Score=58.20 Aligned_cols=195 Identities=16% Similarity=0.189 Sum_probs=109.0
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCc-eeEEE-------EEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTD-------TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~~-------~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~ 214 (498)
+..|++++.++.|.-.|..+|+.+-+........ ..+.+ +++ .+..++.++.++.+.-.|..+|+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4566777778889999999987766543221110 01101 111 2345677888999999999999987665
Q ss_pred cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCC-----------
Q 010883 215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTS----------- 277 (498)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~----------- 277 (498)
......... .+.+.-..-++ .++++.. +|.|.-+|.++++.+-++..-..
T Consensus 147 ~~~~~~~~~------------~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 147 KNGDYKAGY------------TITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred ccccccccc------------cccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence 442211000 11110000144 4555432 68899999999987755432110
Q ss_pred --------------------Cee-EEEEeCCCCCEEEEeeCC-----C-----------eEEEEcCccccCCCceeEEec
Q 010883 278 --------------------DVN-TVCFGDESGHLIYSGSDD-----N-----------LCKVWDRRCLNVKGKPAGVLM 320 (498)
Q Consensus 278 --------------------~v~-~~~~~~~~~~~l~s~s~d-----g-----------~i~vwd~~~~~~~~~~~~~~~ 320 (498)
.+. .+++ ++...+++.+... + .|.-.|++ +++..-.++
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~-D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~Q 288 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSY-DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHYQ 288 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeE-cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEeee
Confidence 111 2344 3445566665532 2 44455555 555555544
Q ss_pred cccccE---------EEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCC
Q 010883 321 GHLEGI---------TFIDSRGDGR---YLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 321 ~~~~~v---------~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~ 357 (498)
.....+ .-+....+|+ .++.+..+|.+.+.|-++.+.
T Consensus 289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 322211 1222334665 778999999999999998765
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.06 E-value=0.002 Score=61.93 Aligned_cols=141 Identities=18% Similarity=0.132 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
.+..+.++|+|++++++ .+|...|+.....+.. ..+.-..+.|.+.++ +|+-..++.
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k---------------------~~G~g~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK---------------------AFGSGLSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE---------------------EEEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc---------------------ccCceeEEEEecCcc-EEEEECCCe
Confidence 57889999999999984 5777888874332221 112456788998665 777777888
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
|.++.--..+....+.. ...+..|-. |.+|+..+.+ .|.+||+. .++.+..+... +|..+.|++++.+
T Consensus 91 I~I~kn~~~~~~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~----~~~~i~~i~v~--~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWE----TGKLIRRIDVS--AVKYVIWSDDGEL 158 (443)
T ss_dssp EEEEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TT----T--EEEEESS---E-EEEEE-TTSSE
T ss_pred EEEEEcCccccceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhh----HcceeeEEecC--CCcEEEEECCCCE
Confidence 99963323332223321 122333322 6667666554 89999998 77888887643 4899999999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 010883 338 LISNGKDQAIKLWDIRK 354 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~ 354 (498)
++..+.+ .+.|++...
T Consensus 159 val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEE-S--SEEEEEE-H
T ss_pred EEEEeCC-eEEEEEecc
Confidence 9988765 678877654
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00014 Score=70.34 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=103.9
Q ss_pred ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883 176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 255 (498)
Q Consensus 176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d 255 (498)
...|.--+++..+++++.|+..|.+.+|+-..+.......- +-.+.+.....+++..++|+|+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---------------~~~~~~~~~~vs~~e~lvAagt~~ 97 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---------------GATGITCVRSVSSVEYLVAAGTAS 97 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc---------------CccceEEEEEecchhHhhhhhcCC
Confidence 33566667788999999999999999999888765443321 122256667788888889999999
Q ss_pred CeEEEEECCCCeeeEE-E-----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 256 DCIYVYDLEANKLSLR-I-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
|.|.++-+....+... + ..|...|++++|+ +++..+++|...|.|.+-.+.....-......+......|..+
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl 176 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL 176 (726)
T ss_pred ceEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence 9999998876432211 1 1478899999998 8999999999999999888763111122233344455667777
Q ss_pred EEcCCCCEEEEE
Q 010883 330 DSRGDGRYLISN 341 (498)
Q Consensus 330 ~~~~~~~~l~s~ 341 (498)
... ++.+|++.
T Consensus 177 D~~-q~~LLVSt 187 (726)
T KOG3621|consen 177 DYL-QSYLLVST 187 (726)
T ss_pred ecc-cceehHhh
Confidence 765 33344433
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.0068 Score=53.33 Aligned_cols=203 Identities=13% Similarity=0.161 Sum_probs=112.2
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEecc-CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883 236 GIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313 (498)
Q Consensus 236 ~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 313 (498)
.+..++|+|+.. ++++....+.|..++. +++.+.++.-. .+..-.|++. .++.++++.-.++.+.++++.......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 699999999755 5666677888988897 47777777533 3678999996 666666666568999999884221111
Q ss_pred --ceeEEe-----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 314 --KPAGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 314 --~~~~~~-----~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
.....+ ..+...+-.++|+|.++.|+.+-...-..+|.++.......
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-------------------------- 154 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-------------------------- 154 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---------------------------
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc--------------------------
Confidence 111111 12445689999999888888887776677777654210000
Q ss_pred CCCceEEEEcc----CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC---------CCeeee
Q 010883 387 PCDQSVATYKG----HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRDC 453 (498)
Q Consensus 387 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l 453 (498)
-.+..... ...........+.+. .+.+++....+..|..+| .+|+.+..+.-.. ...-.+
T Consensus 155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~---t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPR---TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp ----EEEE-HHHH-HT--SS---EEEEETT---TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred ---eeeccccccccccceeccccceEEcCC---CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence 00000000 001112233444443 577888888889999999 6787766554211 246689
Q ss_pred EEcCCCCeEEEEeCCCcEEEe
Q 010883 454 SWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 454 ~~sp~~~~l~s~~~Dg~i~iw 474 (498)
+|.++|++.+++ .-+..+++
T Consensus 228 a~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEEE-TTTEEEEE
T ss_pred EECCCCCEEEEc-CCceEEEe
Confidence 999999755554 55555544
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.99 E-value=0.0034 Score=57.19 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=90.7
Q ss_pred CCCCeEEEEECCCeEEEEECC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883 186 PDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264 (498)
Q Consensus 186 p~~~~l~~~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~ 264 (498)
..++.|+.|..+| +.++++. ......... ...|..+...++-+.|++-+ |+.++++++.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~------------------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~ 64 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK------------------LSSITQLSVLPELNLLLVLS-DGQLYVYDLD 64 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee------------------cceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence 3578899999888 8899882 222211111 12588999999877766664 5999999987
Q ss_pred CCeeeEE--------------EeccCCCeeEEE-EeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEE
Q 010883 265 ANKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITF 328 (498)
Q Consensus 265 ~~~~~~~--------------~~~~~~~v~~~~-~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~ 328 (498)
.-..... .......+...+ -....+...++......|.+|......... .....+. -.+.+..
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~ 143 (275)
T PF00780_consen 65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSS 143 (275)
T ss_pred hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEE
Confidence 6544331 112233445544 112334444445555699998886432222 3445544 3477888
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
++|. ++.|+.|..+ ...+.|+.+...
T Consensus 144 i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 144 IAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred EEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 9998 4567777654 478888886543
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.021 Score=54.61 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=128.9
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCccccC
Q 010883 236 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNV 311 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~ 311 (498)
....++.++.+..+. ....++.|.+.|..+.+.......-. ....+++. +++..++.+.. ++++.+.|..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~---- 148 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAA---- 148 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC-CCCCEEEEEecccCCceEEEEeCC----
Confidence 355778888887444 44456889999988877766554332 56788897 56655555554 6888888876
Q ss_pred CCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 312 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
..+.......-..+ ..++++|+|..++... .++.|.+.|.......
T Consensus 149 t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~-------------------------------- 195 (381)
T COG3391 149 TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV-------------------------------- 195 (381)
T ss_pred CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee--------------------------------
Confidence 55555553332234 8899999999665554 7889999996653211
Q ss_pred eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCC-CeeeeEEcCCCCeEEEEe
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPMLVSSS 466 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~s~~ 466 (498)
. .............+...++|+|.++++.... +.+...|..++.....-..-.. ....+..+|+|..+.+..
T Consensus 196 ---~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 196 ---R-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred ---c-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 0 0000000111111223567788877776554 5899999988887665221112 466789999999887774
Q ss_pred C-CCcEEEecCCCCC
Q 010883 467 W-DGDVVRWEFPGNG 480 (498)
Q Consensus 467 ~-Dg~i~iw~~~~~~ 480 (498)
. .+.+.+-|.....
T Consensus 272 ~~~~~V~vid~~~~~ 286 (381)
T COG3391 272 SQGGTVSVIDGATDR 286 (381)
T ss_pred cCCCeEEEEeCCCCc
Confidence 3 4777777766543
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00024 Score=70.13 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=87.3
Q ss_pred EEEEEeCCCCCeEEEEEC----CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 179 VTDTSLSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 179 v~~~~~sp~~~~l~~~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
-+-..|+|...++++++. .|.|.||- ++|+...... ....+++++|+|..-.|+.|-.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cceehhhhccChHHHHHhhccc
Confidence 344679999999988764 46787774 4444322111 2225788999999888999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 255 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
-|.+.+|...+.+.-.....|+.+|..+.|+ ++|..++++..-|.|.+|...
T Consensus 80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence 9999999998887766677899999999998 889999999999999999875
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.89 E-value=0.0069 Score=56.59 Aligned_cols=216 Identities=17% Similarity=0.211 Sum_probs=120.0
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC----CCEEEEEeC---------C-CeEEEEECC
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGSS---------D-DCIYVYDLE 264 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----g~~l~~g~~---------d-g~i~vwd~~ 264 (498)
.|++.|..+.+......+.... +-..+..+.+..+ ..+|++|+. . |.|.++++.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E------------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~ 70 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNE------------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEIS 70 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTE------------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEECCCCc------------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEE
Confidence 5788887777655444443322 1123444445443 467887753 2 889999998
Q ss_pred CC-----eeeEE-EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCC
Q 010883 265 AN-----KLSLR-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGR 336 (498)
Q Consensus 265 ~~-----~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~ 336 (498)
.. +.... -....++|++++-. ++. |+++. .+.|.+|++. ....+.... .....+.++... ++
T Consensus 71 ~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~~ 140 (321)
T PF03178_consen 71 ESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--KN 140 (321)
T ss_dssp SS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--TT
T ss_pred cccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEcc----CcccchhhheecceEEEEEEecc--cc
Confidence 84 22211 12557899999875 344 44443 4799999997 333122222 122356666665 55
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC
Q 010883 337 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 416 (498)
Q Consensus 337 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 416 (498)
+|+.|.....+.++..+.. ...+..+........+..+.+-. +
T Consensus 141 ~I~vgD~~~sv~~~~~~~~---------------------------------~~~l~~va~d~~~~~v~~~~~l~----d 183 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEE---------------------------------NNKLILVARDYQPRWVTAAEFLV----D 183 (321)
T ss_dssp EEEEEESSSSEEEEEEETT---------------------------------TE-EEEEEEESS-BEEEEEEEE-----S
T ss_pred EEEEEEcccCEEEEEEEcc---------------------------------CCEEEEEEecCCCccEEEEEEec----C
Confidence 8999998888888755431 12222232222223333333332 4
Q ss_pred CcEEEEEecCCeEEEEECCC-------Cc--E--EEEeccCCCCeeee---EEcCC--C------CeEEEEeCCCcEEEe
Q 010883 417 QKYIYTGSHDSCVYVYDLVS-------GE--Q--VAALKYHTSPVRDC---SWHPS--Q------PMLVSSSWDGDVVRW 474 (498)
Q Consensus 417 ~~~l~~g~~dg~i~iwd~~~-------~~--~--~~~~~~h~~~v~~l---~~sp~--~------~~l~s~~~Dg~i~iw 474 (498)
++.++++..+|.+.++.... +. . +..+. ....|+++ ++.|. + +.++-++.+|.|...
T Consensus 184 ~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 184 EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 46899999999999998763 22 2 23332 34567777 55552 2 248888899998843
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.89 E-value=0.014 Score=54.53 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=107.1
Q ss_pred CeEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCCC----CCeEEEEEC----------CCeEEEEECCCC-----ceec
Q 010883 153 SQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPD----QRHLVYASM----------SPIVHIVDVGSG-----TMES 212 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~----~~~l~~~s~----------d~~i~iwd~~~~-----~~~~ 212 (498)
+.|++.|..+.+.+......... -..+..+.+..+ ..+|++|.. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888777666544333222 112333444443 467777653 288999999884 2211
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEe-ccCCCeeEEEEeCCCCC
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDESGH 290 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~ 290 (498)
.... ...++|++++-- ++. |+++. ++.|++|++...+ ....-. .....+.++... ++
T Consensus 82 i~~~---------------~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~ 140 (321)
T PF03178_consen 82 IHST---------------EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KN 140 (321)
T ss_dssp EEEE---------------EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TT
T ss_pred EEEE---------------eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---cc
Confidence 1111 123478888876 444 55554 4789999998887 433322 233466777665 56
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+++.|.....+.++..+. ....+..+. .....++++.+-++++.++.+..+|.+.++....
T Consensus 141 ~I~vgD~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEESSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEcccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 999999888888875541 122222222 2345588888886667999999999999998864
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.82 E-value=0.0026 Score=63.74 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-CeEEE
Q 010883 132 SRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHI 202 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~------~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~~i~i 202 (498)
..+...++||||+.+|..- .|+ .|.+++.... .... . .+. ..+.-.|+|||+.|++.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~l-t-~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQV-L-EGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceee-e-cCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 4678999999999888665 243 4555554322 2222 1 222 37788999999988887643 22333
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCeee----EEEec-
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANKLS----LRILA- 274 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~v---wd~~~~~~~----~~~~~- 274 (498)
.+............... .... .....|..+.|+|||..++... +|.|++ -....+... ..+..
T Consensus 424 ~~~~~~gql~~~~vd~g----e~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 424 IRDPATGQLARTPVDAS----AVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eccCCCceEEEEeccCc----hhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 33211111111110000 0000 1123699999999999888876 578877 444445411 11222
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--ccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIK 348 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~dg~i~ 348 (498)
-...+.++.|. .++.+ +++..++...+|.+... +.....+.. ...++..++-+++ .++....++.+.
T Consensus 495 l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~vD---G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNLD---GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEe-cCCEE-EEEecCCCCceEEEecC---CccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 22346889997 55654 45565665556665421 222111122 3567777877763 455555666433
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.77 E-value=8.3e-05 Score=43.98 Aligned_cols=39 Identities=38% Similarity=0.655 Sum_probs=34.5
Q ss_pred CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 437 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 437 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 358
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.76 E-value=0.0034 Score=61.61 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=116.0
Q ss_pred EEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC----eEEEEECCCCcee
Q 010883 137 SQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTME 211 (498)
Q Consensus 137 ~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~----~i~iwd~~~~~~~ 211 (498)
+=++|||+.+...+ ..+.+.+.|.++.+...+..... ....++++|+|+++.+.+.+. ++...+.......
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV 273 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence 34677887664333 35677888888765555544332 345678999999998886422 3333333222211
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC----C-eeeEEEeccCCCeeEEEEeC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----N-KLSLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~----~-~~~~~~~~~~~~v~~~~~~~ 286 (498)
..+.... ..++.++|++...+ ++.|.+.|..+ + +.+..+ .-......+.++
T Consensus 274 vvfni~~--------------------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vS- 329 (635)
T PRK02888 274 VVFNIAR--------------------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTS- 329 (635)
T ss_pred EEEchHH--------------------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEEC-
Confidence 1111110 01345578876663 67899999988 3 444444 455667889998
Q ss_pred CCCCEEEEe-eCCCeEEEEcCccccC--------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 287 ESGHLIYSG-SDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 287 ~~~~~l~s~-s~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
|++++++++ ..+.+|.|.|+..... ....+....- .......+|.++|+...+..-|..|..||+..
T Consensus 330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 666665554 5589999999973221 0111222222 22334678999999888889999999999876
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.049 Score=52.05 Aligned_cols=261 Identities=16% Similarity=0.148 Sum_probs=156.5
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCCCce
Q 010883 133 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~ 210 (498)
....+...++|..+.... ....+.+-+.... ........ +. .....++.++.+..+. ....++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~~~~~-g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQSLSV-GG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeeeeccC-CC-ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 455677888885444433 2224444444421 11111111 10 3456778888887444 444568999999766655
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (498)
........ ....++++++++.+.++.. ++.+.+.|-.+++.......-..+ ..+++. +
T Consensus 109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p 169 (381)
T COG3391 109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P 169 (381)
T ss_pred eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence 44433222 4567899999988777765 688999999999988875544444 889997 6
Q ss_pred CCCEEEEe-eCCCeEEEEcCccccCCCceeE-E---eccccccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCcc
Q 010883 288 SGHLIYSG-SDDNLCKVWDRRCLNVKGKPAG-V---LMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNA 359 (498)
Q Consensus 288 ~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~-~---~~~~~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~ 359 (498)
+++.++.. ..++.|.+.|.. ...... . ...-......+.++|+|..+.+.... +.+...|..+...
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-- 243 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-- 243 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE--
Confidence 67755444 478999999975 222221 0 11122334578899999976655443 4788888776321
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCc
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGE 438 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~ 438 (498)
....... ... ......++|+|+++.+... .+.+.+.|..+..
T Consensus 244 ---------------------------------~~~~~~~---~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 244 ---------------------------------TATDLPV---GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ---------------------------------EEecccc---ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 1110000 000 1122356778999888855 4889999998887
Q ss_pred EEEEeccCC---CCeeeeEEcCC
Q 010883 439 QVAALKYHT---SPVRDCSWHPS 458 (498)
Q Consensus 439 ~~~~~~~h~---~~v~~l~~sp~ 458 (498)
......... ..+..+++.+.
T Consensus 287 v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 287 VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeeeecccccccccceeccceee
Confidence 776654332 23455555544
No 360
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.015 Score=51.08 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=117.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..+.+....|.++.|+|+.+.|++......-.||=...|..+.......-+ ..-.+.+.-++++.++--.+..+.++.
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEE
Confidence 345566667999999999998888877777667766667666654433322 356678888888888877788898888
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE---ecc------
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAH------ 275 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~------ 275 (498)
+..+........... +.....+.......++|.|..+.|..+-...-+.||.+......... ..+
T Consensus 157 vd~~t~~~~~~~~~i------~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQKI------PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceEE------eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 876543222221111 00011111346788999998888888888777777776543311111 111
Q ss_pred -CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 276 -TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 276 -~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
-..|.++.|.+..+++++-+..++.+.-.|..
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 24678889988889999999999999888874
No 361
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.64 E-value=0.051 Score=50.43 Aligned_cols=250 Identities=14% Similarity=0.130 Sum_probs=115.9
Q ss_pred ECCCCeEEEEEeecCCC--ceeEEEEEeCCCCCeEEEEEC-C--CeEEEEECCCCceeccccccccccCccccccCCCCc
Q 010883 159 DVERGWKIQKDILAKSL--RWTVTDTSLSPDQRHLVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 233 (498)
Q Consensus 159 ~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~s~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 233 (498)
|..+|..+.++.....+ ..-.+.=+|.+||+.|+.++. + ..+.+.|+.+++..++......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-------------- 81 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-------------- 81 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--------------
Confidence 55666555544333221 111223367889987777665 4 4788889999988776653321
Q ss_pred eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe-CCCCCEEEEeeC---------------
Q 010883 234 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSGSD--------------- 297 (498)
Q Consensus 234 ~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~s~--------------- 297 (498)
......++|+.+.++.......|+-.|+.+.+....+......+-...|. ..++..++-.-.
T Consensus 82 --~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 82 --NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp ---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred --CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 11134667888887766666789999999988765555555555556664 344555432211
Q ss_pred -------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCCCccccccCc
Q 010883 298 -------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGF 365 (498)
Q Consensus 298 -------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~ 365 (498)
...|..-|+. .++. ..+......+..+.|+|....+++-+..| .-+||-++...
T Consensus 160 e~~~a~p~~~i~~idl~----tG~~-~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------- 225 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLK----TGER-KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------- 225 (386)
T ss_dssp HHHHC---EEEEEEETT----T--E-EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------
T ss_pred HHHhhCCCceEEEEECC----CCce-eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------
Confidence 1123333443 3333 33333456678889999666555544333 23677766522
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----CCeEEEEECCCCcEE
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVSGEQV 440 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iwd~~~~~~~ 440 (498)
.....+..+.... .+-...|+|||..|.--+. +..|.-+|+.+++..
T Consensus 226 ------------------------~~~~~v~~~~~~e----~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 226 ------------------------SNVKKVHRRMEGE----SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp ---------------------------EESS---TTE----EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred ------------------------CcceeeecCCCCc----ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 1112222221111 1122246668877665332 446777888887654
Q ss_pred EEeccCCCCeeeeEEcCCCCeEEEEeCC
Q 010883 441 AALKYHTSPVRDCSWHPSQPMLVSSSWD 468 (498)
Q Consensus 441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~D 468 (498)
.... ......+.-++||+++|-=+.|
T Consensus 278 ~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 278 RLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 3322 2245567778899877655554
No 362
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=9.9e-05 Score=61.66 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=95.4
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
.+..-+.||.|+-++++..... ...-.-+.....-+. -+..+++|+.+|.|.+|...........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s---~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~--------- 96 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKES---CRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDR--------- 96 (238)
T ss_pred hhccccCCcccccchhhhhhhh---hhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHh---------
Confidence 4556677889988887622111 111111222211122 3456899999999999988732111000
Q ss_pred cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-CC
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SP 449 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~ 449 (498)
+... ...+.+.+ .--.++.+..+++.||.|+.|++..++.+.....|. .+
T Consensus 97 ------------------------~~s~---~e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 97 ------------------------VCSG---EESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred ------------------------hhcc---cccceecc--ccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 0000 00000000 111256689999999999999999999888888887 77
Q ss_pred eeeeEEcCCCCeEEEE--eCCCcEEEecCCCCCCCCCc
Q 010883 450 VRDCSWHPSQPMLVSS--SWDGDVVRWEFPGNGEAAPP 485 (498)
Q Consensus 450 v~~l~~sp~~~~l~s~--~~Dg~i~iw~~~~~~~~~~~ 485 (498)
+..+..+..+++|+.+ |.|..++.|++....+..+.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~i 185 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESPI 185 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhhhccCcc
Confidence 8888888888888888 89999999999876655443
No 363
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.62 E-value=0.065 Score=50.90 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=45.4
Q ss_pred EEEEcCCCCEEEEEECCCeEEE---EECCC-----CeEEEEEeecCCCc--eeEEEEEeCC-----------CCCeEEEE
Q 010883 136 VSQFSADGSLFVAGFQASQIRI---YDVER-----GWKIQKDILAKSLR--WTVTDTSLSP-----------DQRHLVYA 194 (498)
Q Consensus 136 ~~~~s~dg~~la~~~~dg~i~v---w~~~~-----~~~~~~~~~~~~~~--~~v~~~~~sp-----------~~~~l~~~ 194 (498)
.++.+|+|.+||.+..+..+.+ |+... +.........-.+. ..|+++.+-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5689999999999987776555 54311 11111111111111 4677776643 45788999
Q ss_pred ECCCeEEEEECCC
Q 010883 195 SMSPIVHIVDVGS 207 (498)
Q Consensus 195 s~d~~i~iwd~~~ 207 (498)
..+|.|++|....
T Consensus 86 ~ssG~vrfyte~G 98 (415)
T PF14655_consen 86 TSSGYVRFYTENG 98 (415)
T ss_pred ecccEEEEEeccc
Confidence 9999999998743
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.053 Score=49.61 Aligned_cols=225 Identities=12% Similarity=0.142 Sum_probs=122.8
Q ss_pred EeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883 183 SLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 261 (498)
Q Consensus 183 ~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw 261 (498)
.|.|+...|+.+. ..+.|+-|+..+++........ .+.++.....+..|+++ ..| +.++
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~------------------~~~~~~~~d~~g~Lv~~-~~g-~~~~ 90 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG------------------GFSSGALIDAGGRLIAC-EHG-VRLL 90 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC------------------CcccceeecCCCeEEEE-ccc-cEEE
Confidence 4677777555443 4678888888766543322211 23444444444445554 333 7777
Q ss_pred ECCCCeeeEEEec-----cCCCeeEEEEeCCCCCEEEEeeC-----------CCeEEEEcCccccCCCceeEEecccccc
Q 010883 262 DLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSD-----------DNLCKVWDRRCLNVKGKPAGVLMGHLEG 325 (498)
Q Consensus 262 d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 325 (498)
+..++..+..+.. .....+.+... +++.+.++... -|.|+.+|. .+..+..+..+-..
T Consensus 91 ~~~~~~~~t~~~~~~~~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~~ 164 (307)
T COG3386 91 DPDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLTI 164 (307)
T ss_pred eccCCceeEEeccccCCCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEEe
Confidence 7766655333321 11344566664 56665554333 133444443 24455555555666
Q ss_pred EEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce-EEEEccCceeEE
Q 010883 326 ITFIDSRGDGRYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYKGHSVLRT 403 (498)
Q Consensus 326 v~~l~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 403 (498)
-+.|+||||++.|+.+... +.|.-|++........ +.. ...+.... ..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----------------------------~~~~~~~~~~~~--G~ 214 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----------------------------GRRGFVDFDEEP--GL 214 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----------------------------CcceEEEccCCC--CC
Confidence 7889999999888776654 6788887763110000 010 01111000 00
Q ss_pred EEEEEeccccCCCCcEEEEEecCC-eEEEEECCCCcEEEEeccCCCCeeeeEEcC-CCC-eEEEEeCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQP-MLVSSSWD 468 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~-~l~s~~~D 468 (498)
.-. .+...+|.+-+++..+| .|.+|+.. |+++..+......+++++|-- +.+ +++|+...
T Consensus 215 PDG----~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 215 PDG----MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CCc----eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 000 12233677665555554 89999987 999999887767888888853 344 44444433
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.61 E-value=0.011 Score=44.10 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=50.5
Q ss_pred eeEEEEeCCC---CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 279 VNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 279 v~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
|+++++.+-+ .+.|++|+.|..|++|+ ....+..+. ..+.|+.+.-... ..++.+-.+|+|.+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~------~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK------GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe------CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 6777776433 36899999999999998 446666665 3467778776655 568889999999999753
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.0058 Score=53.07 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=110.6
Q ss_pred EEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----------------
Q 010883 138 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------- 196 (498)
Q Consensus 138 ~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---------------- 196 (498)
.|||||.+|.+.-. -|.|-|||...+ .++.-....|.-....+.|.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 59999999987644 378999999865 4555555566666788999999999988642
Q ss_pred --CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeee
Q 010883 197 --SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS 269 (498)
Q Consensus 197 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~-----i~vwd~~~~~~~ 269 (498)
...+.+.|..+|+.+....++... +.-.|..++..+||+.++.+-..|. -.+=-...++.+
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l------------~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASL------------RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhh------------hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 123444554555544443333211 2236888888888875444432221 111111222222
Q ss_pred EEEe-------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883 270 LRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 270 ~~~~-------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~ 342 (498)
.-+. .....|-+|+.+..++-..+++-..+...+||.. ++..+..-. ......++ +...-+++.+
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~--l~daaGva--~~~~gf~vss 337 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA----TGAVVSEAA--LPDAAGVA--AAKGGFAVSS 337 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC----CCcEEeccc--ccccccce--eccCceEEec
Confidence 2221 2335678888874444444444455567889987 555443221 11122222 2344567777
Q ss_pred CCCcEEEEeC
Q 010883 343 KDQAIKLWDI 352 (498)
Q Consensus 343 ~dg~i~iwd~ 352 (498)
.+|.+.++.-
T Consensus 338 g~G~~~~~s~ 347 (366)
T COG3490 338 GQGRIIFYSR 347 (366)
T ss_pred CCceEEeccc
Confidence 7888888743
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.60 E-value=0.011 Score=44.06 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=67.2
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883 237 IFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 237 i~~~~~s~---~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
|+++++.. || +.|++|+.|..|++|+-. +.+..+ .....|++++-. ....|+.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-~e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-TETDKVTSLCSL--GGGRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-ecccceEEEEEc--CCCEEEEEecCCEEEEEeCc-----
Confidence 45555554 33 589999999999999744 455555 345677888775 34679999999999999853
Q ss_pred CceeEEeccccccEEEEEEc-CC--C-CEEEEEeCCCcEE
Q 010883 313 GKPAGVLMGHLEGITFIDSR-GD--G-RYLISNGKDQAIK 348 (498)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~~-~~--~-~~l~s~~~dg~i~ 348 (498)
..+...+.... ++++.+. .+ | ..|++|-.+|.|-
T Consensus 72 -~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 -QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33444443333 5555543 33 2 3688888888764
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.085 Score=50.87 Aligned_cols=192 Identities=11% Similarity=0.082 Sum_probs=96.0
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCce-------eEEeccccccEEEE
Q 010883 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP-------AGVLMGHLEGITFI 329 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~~~~~v~~l 329 (498)
.|.||+.. |+.+.++.-..+.+.++.|+ . .+.|++-..||.+++||+. +.. +....-....+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~-----G~~~fsl~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLF-----GEFQFSLGEEIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCC-----CceeechhhhccccCccccccccc
Confidence 59999865 45556665444899999997 4 4556677899999999984 222 11111111112222
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccc------cccCcccc-cccceee--cCC-cCcccccCCCCceEEEEccCc
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNAS------CNLGFRSY-EWDYRWM--DYP-PQARDLKHPCDQSVATYKGHS 399 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ 399 (498)
.+..+|-.+++ .++.+.+. ........ ........ .+..... .+. .....+....+..+..+..+.
T Consensus 134 ~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 134 WFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 33335533333 34444333 22221100 00000000 0000000 011 111122222233333333322
Q ss_pred e-eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-CCCeeeeEEcCCCC
Q 010883 400 V-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQP 460 (498)
Q Consensus 400 ~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~ 460 (498)
. ..........++.||+|++||.-..+|.+.+....-.+.+..+... ......+.|+-+..
T Consensus 210 ~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 210 FKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 1 0000011334467889999999999999999987666676666533 35667888876654
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00072 Score=64.76 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=66.5
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEE-EEEeCCCCCeEEEEECCCeEEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
.+......|.-+.|+|.-.++|++..+|.|.++.++-. ++.. ..-+...++ +++|.|||+.||+|-.||+|++.|
T Consensus 15 ~~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 15 GVMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred hhhccccceEEEEEcCccchhheeccCCcEEEEEeccc-eeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 33445667899999999999999999999999988732 3332 222333555 999999999999999999999999
Q ss_pred CCCCceecc
Q 010883 205 VGSGTMESL 213 (498)
Q Consensus 205 ~~~~~~~~~ 213 (498)
++++.....
T Consensus 91 ve~~~~l~~ 99 (665)
T KOG4640|consen 91 VEKGGRLVS 99 (665)
T ss_pred ccCCCceec
Confidence 998876544
No 370
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.44 E-value=0.18 Score=51.70 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=50.5
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+|++||.- ...|++|+..+.+.+..-..|..++..+...-.+..++.|..=+.|.+..+...+
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 67777654 4679999998887776666788899999999899999999988888877665544
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.018 Score=58.87 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=94.9
Q ss_pred CeEEEE-ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-----CCCEEEEEeCCCeEEEEE
Q 010883 189 RHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYD 262 (498)
Q Consensus 189 ~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----~g~~l~~g~~dg~i~vwd 262 (498)
++|+.. .....|+-.|++.|+.+..+...... +|..++-.. +...-+.|-.+..++.||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~---------------~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI---------------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCc---------------ceeEecccccccccCCCceEEEECCCceEEec
Confidence 444443 34578999999999988877764321 244333221 123456677778899999
Q ss_pred CCCCe--eeEE---EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883 263 LEANK--LSLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 263 ~~~~~--~~~~---~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
.+-.. ++.. ........+|++-+ ...+||+|+.+|.||+||.- .......+.+...+|..|..+.||++
T Consensus 559 pR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~----g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRL----GKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred cCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeeccc----chhhhhcCCCCCCCeeEEEecCCCcE
Confidence 87532 2211 11234566777764 45588999999999999953 23344456677899999999999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 010883 338 LISNGKDQAIKLWDIR 353 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~ 353 (498)
|++.+ +..|.+++..
T Consensus 633 ilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 633 ILATC-KTYLLLIDTL 647 (794)
T ss_pred EEEee-cceEEEEEEe
Confidence 88665 4567788764
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.43 E-value=0.16 Score=50.70 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=89.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---CCCeEEEEE------CCCeEEEEECCCCceeccc
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYAS------MSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~s------~d~~i~iwd~~~~~~~~~~ 214 (498)
..++.++.|+.|.-.|..+|+.+.+..... +.. -..+.-+| ++. ++++. .+|.|..+|.++|+.....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-~~~-~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGD-YKA-GYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccc-ccc-cccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEec
Confidence 457778889999999999997776543221 110 00111122 343 44443 2689999999999876654
Q ss_pred cccccccC----------cccccc----CCCCc-eecEE-EEEEcCCCCEEEEEeCC-----C-----------eEEEEE
Q 010883 215 NVTEIHDG----------LDFSAA----DDGGY-SFGIF-SLKFSTDGRELVAGSSD-----D-----------CIYVYD 262 (498)
Q Consensus 215 ~~~~~~~~----------~~~~~~----~~~~h-~~~i~-~~~~s~~g~~l~~g~~d-----g-----------~i~vwd 262 (498)
........ .+.... ....+ ...+. .+++.+...++..+..+ + +|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 43321100 000000 00001 11121 34666666666665522 2 677889
Q ss_pred CCCCeeeEEEeccCCCe---------eEEEEeCCCCC---EEEEeeCCCeEEEEcCc
Q 010883 263 LEANKLSLRILAHTSDV---------NTVCFGDESGH---LIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 263 ~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~---~l~s~s~dg~i~vwd~~ 307 (498)
+++++..-.+......+ .-+.. +.+++ .++.+..+|.+.+.|.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDL-KKDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEe-ccCCcEEEEEEEeCCCceEEEEECC
Confidence 99999876665322211 11222 23554 78899999999999997
No 373
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.41 E-value=0.11 Score=48.53 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=40.9
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEE----eccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGEQVAA----LKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 472 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~ 472 (498)
.|.++++.-..+.|....+..+..+.. +......+.++++.|||.++++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 677787777778898888875533221 223445899999999999988888899874
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0092 Score=56.38 Aligned_cols=144 Identities=15% Similarity=0.234 Sum_probs=95.2
Q ss_pred CCCeEEE-EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-------EEEEEeCCCeE
Q 010883 187 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 258 (498)
Q Consensus 187 ~~~~l~~-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-------~l~~g~~dg~i 258 (498)
+.++|+. +.....++-.|++.|+.+..+.... .|.-+.+.|+.+ .-+.|-.+..|
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~v 406 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSV 406 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeecCCce
Confidence 4444444 4444568888999999877776544 245555666443 12456667789
Q ss_pred EEEECCCCee--eEEEecc----CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 259 YVYDLEANKL--SLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 259 ~vwd~~~~~~--~~~~~~~----~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
+-||.+-... +.....| .....|.+- ...-++++||.+|.|++||.- .......+.+...+|..+..+
T Consensus 407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri----~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRI----GRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred EEecccccCcceeeeeeccccccccccceeee--cCCceEEEeecCCcEEeehhh----hhhhhhcccccCCceeeEEee
Confidence 9999864322 1111222 234455555 345689999999999999974 344455677788999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 010883 333 GDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.+|++|+..+ +..+.+.++.-
T Consensus 481 adGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 481 ADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred ccCcEEEEec-ccEEEEEEEec
Confidence 9999887654 55677777654
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.38 E-value=0.16 Score=49.45 Aligned_cols=248 Identities=16% Similarity=0.193 Sum_probs=123.8
Q ss_pred eEEEEEeCCCCCeEEEEE-CCC----eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 178 TVTDTSLSPDQRHLVYAS-MSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s-~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
.+....++|++++||.+- ..| .++++|+.+++..... +.. .....+.|.++++.|+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~----------------~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN----------------PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE----------------EESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc----------------cccceEEEeCCCCEEEEE
Confidence 455788999999998763 333 6999999998654321 110 012239999998887766
Q ss_pred eCC-----------CeEEEEECCCCeee--EEEeccCCC--eeEEEEeCCCCCEEEEeeCC----CeEEEEcCccccCCC
Q 010883 253 SSD-----------DCIYVYDLEANKLS--LRILAHTSD--VNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKG 313 (498)
Q Consensus 253 ~~d-----------g~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~ 313 (498)
..+ ..|+.|.+.+.... ..+...... ...+..+ .++++|+..+.. ..+.+.|+.......
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 533 24888888876533 333333333 4567776 777777654332 346777775210001
Q ss_pred ceeEEeccccccEE-EEEEcCCCCEEEEEe---CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883 314 KPAGVLMGHLEGIT-FIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389 (498)
Q Consensus 314 ~~~~~~~~~~~~v~-~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
.....+......+. .+... .+.+++... ..+.|...++......
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------------------------------- 314 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------------------------------- 314 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG-------------------------------
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc-------------------------------
Confidence 22333333333333 34333 333333322 2345666666653210
Q ss_pred ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC--eEEEEECCCCcEEEEec-cCCCCeeeeEEcCCCCe-EE-E
Q 010883 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPM-LV-S 464 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~-l~-s 464 (498)
.....+-.+.....+..+.. . .+.+++....++ .|+++++..+.....+. .-.+.|..+...++++. .+ .
T Consensus 315 ~~~~~l~~~~~~~~l~~~~~--~---~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 315 EWWTVLIPEDEDVSLEDVSL--F---KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp GEEEEEE--SSSEEEEEEEE--E---TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred cceeEEcCCCCceeEEEEEE--E---CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 00111111111111111111 1 344555555554 68899998344444433 23445666766666662 23 3
Q ss_pred EeC--CCcEEEecCCCCC
Q 010883 465 SSW--DGDVVRWEFPGNG 480 (498)
Q Consensus 465 ~~~--Dg~i~iw~~~~~~ 480 (498)
.|. -+++..||+.+++
T Consensus 390 ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 390 SSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETTEEEEEEEEETTTTC
T ss_pred eCCCCCCEEEEEECCCCC
Confidence 332 2567777877654
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.36 E-value=0.00061 Score=40.00 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=33.3
Q ss_pred ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
.+...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566677888999999999999999999999999996
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.33 E-value=0.045 Score=55.04 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=106.3
Q ss_pred cCCCCEEEEEECCC------eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-C-----eEEEEECCC
Q 010883 140 SADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-----IVHIVDVGS 207 (498)
Q Consensus 140 s~dg~~la~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~-----~i~iwd~~~ 207 (498)
+..+.+++.|+.++ .+..||..++.-.... ... ....-.+++.. ++...++|+.| | .+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-PMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-CCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 44567778887763 5788998877222111 111 11123333333 55777888888 3 688889888
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeeeEEEeccCCCeeEE
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
++......+...... ..+.. -+|...|+|+.||. |-.||..+.+....- .........
T Consensus 359 ~~W~~~a~M~~~R~~------------~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~ 421 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSD------------FGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGH 421 (571)
T ss_pred CceeccCCccCcccc------------ceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeee
Confidence 886655554432211 11221 16888899998864 777888777653222 122233333
Q ss_pred EEeCCCCCEEEEeeCCC------eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc-----EEEEe
Q 010883 283 CFGDESGHLIYSGSDDN------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-----IKLWD 351 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-----i~iwd 351 (498)
....-++.+.++|+.++ ++..||.... ....+..+........ ++. -++.+.+.|+.|+. |..||
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEc
Confidence 33334678888888665 4667887522 2222222222222222 222 26677888887763 66677
Q ss_pred CCC
Q 010883 352 IRK 354 (498)
Q Consensus 352 ~~~ 354 (498)
..+
T Consensus 498 p~~ 500 (571)
T KOG4441|consen 498 PET 500 (571)
T ss_pred CCC
Confidence 665
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.33 E-value=0.0049 Score=62.82 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCCCEEEEe-eCCCeEEEEcCccccCCCceeEEecccccc-EEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 287 ESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 287 ~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
.+.++|+.. .....|+-.|+. .++.+..+..+... |..++-.. +...-+.|-.+..+..||.|-.....
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe----~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLE----RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cccceEeecCCCCCceEEEecC----CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344454443 356788999998 89999999887654 55554321 12345667778889999998632100
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
. ......|.... . |+..-+....+||+|+.+|.||+||-...+.
T Consensus 567 v----------------------------~~~~k~Y~~~~---~-----Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~A 610 (794)
T PF08553_consen 567 V----------------------------DSQSKQYSSKN---N-----FSCFATTEDGYIAVGSNKGDIRLYDRLGKRA 610 (794)
T ss_pred e----------------------------eccccccccCC---C-----ceEEEecCCceEEEEeCCCcEEeecccchhh
Confidence 0 00011111111 1 1111122456899999999999999543333
Q ss_pred EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 440 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 440 ~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
...+.+-..+|.+|..+.||++|+..+ +..|.+++..
T Consensus 611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 344556789999999999999877666 4567777753
No 379
>PHA02713 hypothetical protein; Provisional
Probab=97.33 E-value=0.026 Score=56.76 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=50.3
Q ss_pred CCCeEEEEECC------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----
Q 010883 187 DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---- 256 (498)
Q Consensus 187 ~~~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---- 256 (498)
++...+.|+.+ ..+..||..++.......+..... .. +++ .-+|+..+.|+.++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~--------------~~-~~~-~~~g~IYviGG~~~~~~~ 366 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC--------------RF-SLA-VIDDTIYAIGGQNGTNVE 366 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh--------------ce-eEE-EECCEEEEECCcCCCCCC
Confidence 66777777753 357788888776544433322110 11 122 22677778887654
Q ss_pred -eEEEEECCCCeeeEEEeccCCCe--eEEEEeCCCCCEEEEeeCC
Q 010883 257 -CIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD 298 (498)
Q Consensus 257 -~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~d 298 (498)
.+..||..+++... +..-..+. .+++. -++.+.+.|+.+
T Consensus 367 ~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 367 RTIECYTMGDDKWKM-LPDMPIALSSYGMCV--LDQYIYIIGGRT 408 (557)
T ss_pred ceEEEEECCCCeEEE-CCCCCcccccccEEE--ECCEEEEEeCCC
Confidence 48889988775432 11111111 12222 356777777755
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.31 E-value=0.04 Score=55.36 Aligned_cols=230 Identities=17% Similarity=0.185 Sum_probs=123.5
Q ss_pred CCCeEEEEECC------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----
Q 010883 187 DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 255 (498)
Q Consensus 187 ~~~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----- 255 (498)
.+.+++.|+.+ ..+..+|..++........+... .-.+++.. ++...++|+.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r---------------~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR---------------CRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc---------------ccccEEEE-CCEEEEEccccCCCcc
Confidence 34556666665 36888888887665555544221 22334444 45778888888
Q ss_pred -CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe-----EEEEcCccccCCCceeEEeccccccEEEE
Q 010883 256 -DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-----CKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 256 -g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
.++..||..+++... +..-...-..+....-++.+.++|+.||. |-.||.... ....+..+.......-..
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~ 424 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVA 424 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEE
Confidence 357888988877543 22211111112222246788899999874 667777522 222232222212222222
Q ss_pred EEcCCCCEEEEEeCCC------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 330 DSRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
.+ +|...++|+.++ .+..||..+..-... ..+.... .
T Consensus 425 ~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--------------------------------~~M~~~R---~ 467 (571)
T KOG4441|consen 425 VL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--------------------------------APMNTRR---S 467 (571)
T ss_pred EE--CCEEEEEcCcCCCccccceEEEEcCCCCceeec--------------------------------CCccccc---c
Confidence 22 677888888654 456677665321111 0000000 0
Q ss_pred EEEEEeccccCCCCcEEEEEecCC-----eEEEEECCCCcEEE--EeccCCCCeeeeEEcCCCCeEEEEeCCCc-----E
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDS-----CVYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDGD-----V 471 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~-----i 471 (498)
... ...-++.+.+.|+.|+ +|..||..+.+-.. ........+..+.+ ++...+.|+.||. |
T Consensus 468 ~~g-----~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 468 GFG-----VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred cce-----EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccccee
Confidence 000 0011678888888776 37788887765432 23333333333444 6778888888874 6
Q ss_pred EEecCCCC
Q 010883 472 VRWEFPGN 479 (498)
Q Consensus 472 ~iw~~~~~ 479 (498)
..||...+
T Consensus 541 e~ydp~~d 548 (571)
T KOG4441|consen 541 ECYDPETD 548 (571)
T ss_pred EEcCCCCC
Confidence 66765544
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.28 E-value=0.11 Score=49.44 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=49.4
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc----CC----------------CC-eEEEEeCC
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH----PS----------------QP-MLVSSSWD 468 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s----p~----------------~~-~l~s~~~D 468 (498)
+.+.+|++++.|+...=|.|.++|+.++..+..+++..+.= +.|- +. .. +++-+-.-
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 34567789999998778999999999998887777654321 1110 00 11 34456678
Q ss_pred CcEEEecCCCCCCC
Q 010883 469 GDVVRWEFPGNGEA 482 (498)
Q Consensus 469 g~i~iw~~~~~~~~ 482 (498)
|.|-||.+..+...
T Consensus 390 g~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 390 GILEVWSMRQGPRV 403 (415)
T ss_pred CeEEEEecCCCCEE
Confidence 99999999887654
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0024 Score=60.15 Aligned_cols=146 Identities=15% Similarity=0.173 Sum_probs=94.2
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-------LISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-------l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
+|.++.....++-.|+. .++.+..+.-+.. |+-+.+.|+.+. -+.|-.|..|.-||.|-...
T Consensus 348 il~~~~~~~~l~klDIE----~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------ 416 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIE----RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------ 416 (644)
T ss_pred EeeCCCCcCcceeeecc----cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------
Confidence 44455566678888887 8889988887766 777888886532 24466788899999884221
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
..+..-.+|...... .|+..-.....+|++|+.+|.|++||--....-..+
T Consensus 417 --------------------------~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAl 467 (644)
T KOG2395|consen 417 --------------------------NKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTAL 467 (644)
T ss_pred --------------------------ceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcc
Confidence 112222222211111 111111124568999999999999997333344556
Q ss_pred ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 444 ~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
.+-..+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 77889999999999999777665 4455555544
No 383
>PHA02713 hypothetical protein; Provisional
Probab=97.24 E-value=0.028 Score=56.54 Aligned_cols=63 Identities=5% Similarity=0.135 Sum_probs=39.3
Q ss_pred CCcEEEEEecC------CeEEEEECCC-Cc--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCC--cEEEecCCCCC
Q 010883 416 GQKYIYTGSHD------SCVYVYDLVS-GE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNG 480 (498)
Q Consensus 416 ~~~~l~~g~~d------g~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg--~i~iw~~~~~~ 480 (498)
++++.+.|+.+ ..+..||..+ .+ .+..+.........+.+ ++++.++||.|| .+-.||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 56766777654 2467899886 33 33444333333333344 788999999998 67777776553
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.17 Score=46.33 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=106.6
Q ss_pred EEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee-cccc
Q 010883 138 QFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLAN 215 (498)
Q Consensus 138 ~~s~dg~~-la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~-~~~~ 215 (498)
.|.++... +.+--..+.|.-|+..++.... ..... .+.++..-..+..|+++. .-+.+++.+++... ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--~~~p~---~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--FPSPG---GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--EECCC---CcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 47777764 4445567889999988662221 11122 234444433444444432 23667777655542 2221
Q ss_pred ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
..... -....+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|
T Consensus 104 ~~~~~------------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 104 PEDGL------------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred ccCCC------------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEE
Confidence 11110 1125667888889875444322 134555554 45555555555666789999
Q ss_pred eCCCCCEEEEeeC-CCeEEEEcCcc--ccCCCce-eEEeccccccEEEEEEcCCCCEEEEEeCCC-cEEEEeCC
Q 010883 285 GDESGHLIYSGSD-DNLCKVWDRRC--LNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIR 353 (498)
Q Consensus 285 ~~~~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~ 353 (498)
+ ++++.|+.+.. .+.|.-|++.. ....... ...+....+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 171 S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 171 S-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred C-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 8 66766665554 47888887752 1111111 222222345555677777888776554444 78888876
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0026 Score=61.13 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=74.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 314 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 314 (498)
.+.-+.|+|.-..+|.+..+|.|.+..++ .+.+..+.-|...++ +++|. ++|++|+.|-.||+|++.|+. .+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve----~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVE----KGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEcc----CCC
Confidence 68889999999999999999999999988 666777876777777 99997 889999999999999999998 555
Q ss_pred eeEEe-ccccccEEEEEEcC
Q 010883 315 PAGVL-MGHLEGITFIDSRG 333 (498)
Q Consensus 315 ~~~~~-~~~~~~v~~l~~~~ 333 (498)
.+... ......|.++-|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 55442 22345666666653
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.16 E-value=0.15 Score=45.56 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE-CCCC
Q 010883 133 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 208 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd-~~~~ 208 (498)
.+...++|+||+.+|... ....++++..... ..... .+ ..++.-.|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999887765 3344666655433 22222 22 2688889999988777766666666664 2333
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe---CCCeEEEEECCC---C--e----eeEEEeccC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEA---N--K----LSLRILAHT 276 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~---~dg~i~vwd~~~---~--~----~~~~~~~~~ 276 (498)
......- .. . .-...|..++++|||..++... .++.|.+--+.. + . .........
T Consensus 99 ~~~~~~v-~~---------~---~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 99 TGEPVEV-DW---------P---GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred cceeEEe-cc---------c---ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 2211110 00 0 0011699999999999888766 357777765532 2 0 111111334
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCC
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDN 299 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg 299 (498)
..+..+.|. .+..+++.+...+
T Consensus 166 ~~v~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 166 SDVTDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred Ccceeeeec-CCCEEEEEeCCCC
Confidence 688999998 5566665555443
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.16 Score=44.79 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=84.6
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC--
Q 010883 235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-- 311 (498)
Q Consensus 235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-- 311 (498)
..+.++.|+|+.+.|++......-.|+=...|+.+.++.- .-.....|.|. .+++++++--.++.+.++.+.....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence 3599999999999998888887777777778888887752 23455778887 7777777777888888887652210
Q ss_pred ---C-CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 312 ---K-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 312 ---~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
. .-++........+.-.++|.|....|..+-.-.-+.||....
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 0 001111122255678899999999898888877788877663
No 388
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.08 E-value=0.46 Score=48.99 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=113.2
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC--------------CeEEEEECCCCcee
Q 010883 146 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHIVDVGSGTME 211 (498)
Q Consensus 146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d--------------~~i~iwd~~~~~~~ 211 (498)
||.+ ..+.+++..++.=.++..... ........+++.+....+.+.+.- ..++++|-++-+..
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4444 344577776654322222211 122356677777744444443321 13566666655544
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeC----------CCeEEEEECCCCeeeEEEecc--CCC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS----------DDCIYVYDLEANKLSLRILAH--TSD 278 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~--~~~ 278 (498)
.......... ...|.++.|..| +.++++|+. .|.|.++.+..++.+..+..+ .+.
T Consensus 764 ~~hef~~~E~------------~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 764 SSHEFERNET------------ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred eeccccccce------------eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 4433332221 125667779887 778888863 578888888774444433322 355
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+.++.. -+++++| +-...|++|++. ..+.++.-..+..++..+...-.+..+++|.--+.+.+...+.
T Consensus 832 v~aL~~--fngkllA--~In~~vrLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 832 VYALVE--FNGKLLA--GINQSVRLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred eeehhh--hCCeEEE--ecCcEEEEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 666554 3466654 345689999986 5667777777888999999988999999998888887776655
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.08 E-value=0.22 Score=45.34 Aligned_cols=279 Identities=12% Similarity=0.123 Sum_probs=122.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec--CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
...+..++|..+..-+|+| ..+.| +-..+.|+.-...... ........++.|..+ ..++ ++..+ +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCCC
Confidence 4589999999666666665 45543 2233333222221111 111235677888543 3444 44455 344444555
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~ 287 (498)
+.-.......... +....+....++. ....+..|.|+.=. ..++ -......-.+.+..+..+ +
T Consensus 91 ~tW~~v~l~~~lp-------------gs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~-~ 154 (302)
T PF14870_consen 91 KTWERVPLSSKLP-------------GSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS-S 154 (302)
T ss_dssp SS-EE----TT-S-------------S-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE--T
T ss_pred CCcEEeecCCCCC-------------CCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-C
Confidence 4322222111110 1233344434443 33344556554332 2333 223333455778888886 8
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
++.++++++.-....-||.- ...-...-..-...|..|.|.|++.+.+.+ ..|.|++=+...
T Consensus 155 dG~~vavs~~G~~~~s~~~G----~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~------------- 216 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPG----QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD------------- 216 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-----SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-------------
T ss_pred CCcEEEEECcccEEEEecCC----CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC-------------
Confidence 88888888766666788853 211222222345789999999998876654 888888877221
Q ss_pred ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE-EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--
Q 010883 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR-CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 444 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 444 (498)
....+..+........ -...++|.+++...++|+. |.+ +.....|+.-....
T Consensus 217 -----------------------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 217 -----------------------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -----------------------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGG
T ss_pred -----------------------CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccc
Confidence 1112211110000000 0133355557776666654 433 34445565444433
Q ss_pred -cCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 445 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 445 -~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
.-...++.+.|.++.+-++ .+.+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 2345678888876655455 4578888766
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.025 Score=58.15 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=74.6
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883 187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
.+..++.|+..|.+-..|+.+.-. .... .....++|++++|+.+|+.++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~--------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQ--------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-hhhc--------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 455688888888888888765311 0000 0123448999999999999999999999999999999
Q ss_pred eeeEEEeccCCCeeEEEEe--CCCCCEEEEeeCCCeEEEEcC
Q 010883 267 KLSLRILAHTSDVNTVCFG--DESGHLIYSGSDDNLCKVWDR 306 (498)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~s~dg~i~vwd~ 306 (498)
+..+.+..|..+.+.+-+. ..++..++++...|. +|.+
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 9998888777666655432 144557888887776 5554
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.0023 Score=53.77 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=73.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc
Q 010883 245 DGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 245 ~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
-+..+++|+.+|.|++|+...-. ....+..-...|.++--.-.++.+..++..||.|+.|++. ..+.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeecccc
Confidence 34569999999999999886221 1111212223333333222455689999999999999997 667776666676
Q ss_pred -ccEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCC
Q 010883 324 -EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMS 356 (498)
Q Consensus 324 -~~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~ 356 (498)
.++.....+..++.++.+ +.|..++.|++....
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 566666666667777777 788888888887643
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.03 E-value=0.043 Score=46.46 Aligned_cols=154 Identities=15% Similarity=0.242 Sum_probs=94.6
Q ss_pred CCceEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIV 200 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i 200 (498)
..+.+.-..+|+|++++-.-. .|.++.|-.... +.... ..-+--+.++|+.+.+.+... +.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIW---NCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeee---hhccCCccccccccCcEEEEEccCceEE
Confidence 556677788999998553222 355666665432 21111 111234568899887766544 456678
Q ss_pred EEEE--CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883 201 HIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 278 (498)
Q Consensus 201 ~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (498)
.-|| ..+|.......+........+... ..-.++...+|.+.++.-..++|...|..+++.+..+.-....
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 7788 666654333322222211111110 1123444668888888888999999999999999999888899
Q ss_pred eeEEEEeCCCCCEEEEee
Q 010883 279 VNTVCFGDESGHLIYSGS 296 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s 296 (498)
|+|++|--++-.++++..
T Consensus 256 itsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 256 ITSCCFGGKNLDILYVTT 273 (310)
T ss_pred eEEEEecCCCccEEEEEe
Confidence 999999755445555443
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.0062 Score=62.32 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=73.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
.+..++.|+..|.|-..|+... +..........++|++++|+.+|+.++.|-.+|.|.+||+..++....+.....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA-- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence 4567899999999999888764 222333445567999999999999999999999999999998776555442211
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeE
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 258 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i 258 (498)
.++ .|..+.+..++..++++...|.+
T Consensus 174 ----------p~t-~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 174 ----------PVT-GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred ----------ccc-eEEEEEEeCCCcEEEEccCCCce
Confidence 122 35555555666678888877863
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.97 E-value=0.0033 Score=38.95 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE 161 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~ 161 (498)
...|.+++|+|...+||.|..+|.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999993
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.84 E-value=0.44 Score=44.95 Aligned_cols=203 Identities=13% Similarity=0.026 Sum_probs=93.9
Q ss_pred CCCEEEEEE-CCCeEEEEECCCC---eEEEEEeecC-----CCceeEEEEEeCCCCCeEEEEE--C----CCeEEEEECC
Q 010883 142 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILAK-----SLRWTVTDTSLSPDQRHLVYAS--M----SPIVHIVDVG 206 (498)
Q Consensus 142 dg~~la~~~-~dg~i~vw~~~~~---~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~s--~----d~~i~iwd~~ 206 (498)
+.++|+..+ ..+.|.|.|+.+. -.+.+.+... ..-.....+---|+|+.++++- . -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 6788999999853 2333433321 1112233444458998888753 2 2467888877
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCC
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN 266 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--------------------~dg~i~vwd~~~~ 266 (498)
+.+........... ..--..+.|.|..+.+++.. ...++.+||+.+.
T Consensus 166 tf~v~g~We~~~~~-------------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRGP-------------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-TT-------------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCCC-------------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 76655544432211 11345677788777777654 2357999999999
Q ss_pred eeeEEEeccC--CCeeEEEEe-CCCCCE-EEEeeCCCeEEEEcC-ccccCCCceeEEecc-----------------ccc
Q 010883 267 KLSLRILAHT--SDVNTVCFG-DESGHL-IYSGSDDNLCKVWDR-RCLNVKGKPAGVLMG-----------------HLE 324 (498)
Q Consensus 267 ~~~~~~~~~~--~~v~~~~~~-~~~~~~-l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~-----------------~~~ 324 (498)
+.++++.--. ..+..|.|. .|+..+ ++.+.-..+|..|-. ....-..+.+..+.. -..
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 9988886332 235567775 122333 333334445554433 211001111111111 124
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 010883 325 GITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSS 357 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~ 357 (498)
-|+.|..|.|.++|..++ .+|.|+.||+.....
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 578999999999987655 689999999988543
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.84 E-value=0.25 Score=42.03 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883 415 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 457 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 457 (498)
.+|++.++.-..++|...|..+|+.+.+++-....|++++|--
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3678888888889999999999999999998888999999953
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.80 E-value=0.0062 Score=37.70 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.8
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
..|.+++|+|...+||.++.+|.|.++.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 37999999999999999999999999998 443
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.77 E-value=0.34 Score=42.66 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=111.7
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEec-cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883 237 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313 (498)
Q Consensus 237 i~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 313 (498)
...+.|..+|.++-+.+.-| .|+.+|+.+++......- ..---..++.. ++.+..-.=.++...+||.. ..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----TL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----cc
Confidence 55677877888778877766 699999999987655432 22233445553 34455555578899999997 56
Q ss_pred ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE
Q 010883 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 393 (498)
Q Consensus 314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
+.+..+.-. +.=..++ .|++.|+.......|.++|..+.... +.+.
T Consensus 121 ~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~-------------------------------~~i~ 166 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV-------------------------------RTIQ 166 (264)
T ss_dssp EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE-------------------------------EEEE
T ss_pred eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceE-------------------------------EEEE
Confidence 666666432 3445666 35667777766778999998774422 1222
Q ss_pred EEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc------------C---CCCeeeeEEcCC
Q 010883 394 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY------------H---TSPVRDCSWHPS 458 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~ 458 (498)
..........+....+- +|.+.|-.-....|...|..+|+.+..+.. + ..-.+.+||.|.
T Consensus 167 V~~~g~pv~~LNELE~i-----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYI-----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp -EETTEE---EEEEEEE-----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEECCEECCCcEeEEEE-----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 22222222233333332 677777777788899999999998876631 1 245789999988
Q ss_pred CCeEEEEe
Q 010883 459 QPMLVSSS 466 (498)
Q Consensus 459 ~~~l~s~~ 466 (498)
...|...|
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 77554444
No 399
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.69 E-value=0.47 Score=43.16 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=86.7
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc
Q 010883 141 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 220 (498)
Q Consensus 141 ~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (498)
..++.|+.|+.+| |.+++............. ..|..+...|+-+.|++-+ |+.+.++++..-............
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899999998 899998433222222211 1499999999888777665 599999998764433311100000
Q ss_pred cCccccccCCCCceecEEEEE---EcCCCCEEEEEeCCCeEEEEECCCC-----eeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883 221 DGLDFSAADDGGYSFGIFSLK---FSTDGRELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLI 292 (498)
Q Consensus 221 ~~~~~~~~~~~~h~~~i~~~~---~s~~g~~l~~g~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l 292 (498)
..... .........+...+ -......|+++ ....|.+|..... +....+ .-...+.+++|. ++.+
T Consensus 79 ~~~~~--~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i 151 (275)
T PF00780_consen 79 KSRSL--PTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKI 151 (275)
T ss_pred ccccc--cccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEE
Confidence 00000 00001111344444 11233344444 4458888877653 233444 445788999997 5567
Q ss_pred EEeeCCCeEEEEcCc
Q 010883 293 YSGSDDNLCKVWDRR 307 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~ 307 (498)
+.|..+ ...+.|+.
T Consensus 152 ~v~~~~-~f~~idl~ 165 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLN 165 (275)
T ss_pred EEEeCC-ceEEEecC
Confidence 777654 46777876
No 400
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.67 E-value=0.64 Score=44.47 Aligned_cols=148 Identities=12% Similarity=0.115 Sum_probs=87.5
Q ss_pred CCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCC-----CCCeEEEEECCCeEEEEECCCC--c-----
Q 010883 143 GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSG--T----- 209 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~s~d~~i~iwd~~~~--~----- 209 (498)
...+++|+..|.++||+...+. .....+.......+|..+..-+ +...||+ -.-..+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 3689999999999999986542 2223333344556888887532 2234444 45667888887221 1
Q ss_pred eeccccccccccCccccccCCCCce--ecEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYS--FGIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~s~----~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
...+.... .|. .....+.+-| . -.+|.+=+.||.+.+++-+.-.....+.. ---...+
T Consensus 116 ~~~L~~~y--------------eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl 180 (418)
T PF14727_consen 116 QYQLELIY--------------EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPL 180 (418)
T ss_pred EEEEEEEE--------------EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCe
Confidence 10100000 011 1233333333 2 24677789999999999776554444433 2233457
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
+|+ +..+.|++++.+..+.-|...
T Consensus 181 ~Y~-~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 181 CYC-PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEe-ecCCEEEEecCceeEEEecHH
Confidence 787 566788888888899888754
No 401
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.61 E-value=0.05 Score=54.75 Aligned_cols=150 Identities=11% Similarity=0.114 Sum_probs=84.7
Q ss_pred eEEEEEeCCCCCeEEEEE------CCC--eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883 178 TVTDTSLSPDQRHLVYAS------MSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l 249 (498)
.+...+++|+|+.++... .|. .|.+++... ....... +. ....-.|+|||+.|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~----------------g~--~~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE----------------GH--SLTRPSWSLDADAV 411 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec----------------CC--CCCCceECCCCCce
Confidence 578899999999888765 233 455555422 2111111 00 35667899998877
Q ss_pred EEEeCC------------CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc-ee
Q 010883 250 VAGSSD------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PA 316 (498)
Q Consensus 250 ~~g~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~ 316 (498)
++.... +.+.+.++..+.... .....|..+.|+ +++..++... +|.|.+--+.... .+. .+
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wS-pDG~RiA~i~-~g~v~Va~Vvr~~-~G~~~l 485 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLS-RDGVRAAMII-GGKVYLAVVEQTE-DGQYAL 485 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEEC-CCCCEEEEEE-CCEEEEEEEEeCC-CCceee
Confidence 776432 234444444433322 335679999998 7787776655 4777763222110 222 11
Q ss_pred ---EEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 317 ---GVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 317 ---~~~~-~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
..+. .-...+..+.|.+++.++ ++..++...+|.+.
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 1122 223346889999988854 55555555555544
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.55 E-value=0.94 Score=47.23 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=116.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEEeccCC--------CeeEEEEeC---------------CCCCEEEEeeCCCeEE
Q 010883 246 GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--------DVNTVCFGD---------------ESGHLIYSGSDDNLCK 302 (498)
Q Consensus 246 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--------~v~~~~~~~---------------~~~~~l~s~s~dg~i~ 302 (498)
+..|+.++.++.|.-.|..+++.+-++..... ....+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44677788888999999999988777653221 122344431 1244788899999999
Q ss_pred EEcCccccCCCceeEEeccccccE-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEeCCCCCC
Q 010883 303 VWDRRCLNVKGKPAGVLMGHLEGI-------------TFIDSRG--DGRYLISNGK----------DQAIKLWDIRKMSS 357 (498)
Q Consensus 303 vwd~~~~~~~~~~~~~~~~~~~~v-------------~~l~~~~--~~~~l~s~~~----------dg~i~iwd~~~~~~ 357 (498)
-.|.+ +++.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|.++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99987 6776655432 1111 0111112 1335555542 68899999999776
Q ss_pred ccccccCcccccccceeecCCcCcccccCCCCc--eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ--SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
.-........... ....+......... ....++.......+....-.+.+-...+.....-..+.|.-.|+.
T Consensus 349 ~W~~~~g~p~~~~------~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 349 VWAWDPGNPDPTA------PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred eeEEecCCCCccc------CCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence 5443221100000 00000000000000 111122111111110000011110011101111235678889999
Q ss_pred CCcEEEEeccCCCCeee---------eEEcC-CCC---eEEEEeCCCcEEEecCCCCCCCCC
Q 010883 436 SGEQVAALKYHTSPVRD---------CSWHP-SQP---MLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 436 ~~~~~~~~~~h~~~v~~---------l~~sp-~~~---~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
+|+....++.....+++ +.+.. +|+ .++.++.+|.+++.|-.+++...+
T Consensus 423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 99998887642211111 12222 553 889999999999999988765543
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.52 E-value=0.27 Score=47.75 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=71.5
Q ss_pred cEEEEEEcCC----CCEEEEEeCCCeEEEEECC-----CCeeeEEEecc---CC--CeeEEEEeCCCCCEEEEeeCCCeE
Q 010883 236 GIFSLKFSTD----GRELVAGSSDDCIYVYDLE-----ANKLSLRILAH---TS--DVNTVCFGDESGHLIYSGSDDNLC 301 (498)
Q Consensus 236 ~i~~~~~s~~----g~~l~~g~~dg~i~vwd~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~~l~s~s~dg~i 301 (498)
.|..+.|.|- -..|++.-....|.||.+. +++.+.....+ .- -...+.|+ |....|++-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence 5889999984 3356666677889999875 23333222211 11 22457787 566666666555555
Q ss_pred EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 354 (498)
Q Consensus 302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~ 354 (498)
.++++++. .......+ ...+-|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 137 V~~sV~~d--~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCD--SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeC--CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 56676632 22233333 45678999999999998876543 33468888554
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.43 E-value=1.3 Score=45.72 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=57.0
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC----------CceeccccccccccCccccccCCCCceecEEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS----------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 240 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 240 (498)
........|..+.++|+|++|+..|..|. .|..+.. ++.............+ + ...+...|..+
T Consensus 79 ~~~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~----~~~~~~~i~qv 152 (717)
T PF10168_consen 79 PSNPPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-F----TSNSSLEIKQV 152 (717)
T ss_pred cCCCCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhh-c----cCCCCceEEEE
Confidence 33445568999999999999999988664 4444321 1110000000000000 0 11234589999
Q ss_pred EEcCC---CCEEEEEeCCCeEEEEECCCCe
Q 010883 241 KFSTD---GRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 241 ~~s~~---g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
.|+|. +.+|++-+.|+.+++||+....
T Consensus 153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 153 RWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 99995 5799999999999999997544
No 405
>PHA03098 kelch-like protein; Provisional
Probab=96.41 E-value=0.2 Score=50.65 Aligned_cols=189 Identities=13% Similarity=0.065 Sum_probs=93.2
Q ss_pred CCCCEEEEEECCC------eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCc
Q 010883 141 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 209 (498)
Q Consensus 141 ~dg~~la~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~ 209 (498)
.++.+++.|+.++ .+..||..++.- ...............+. -+++..+.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4566777776542 477888877632 22111111111222222 267777788765 357788888776
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEec-cCCCeeEE
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILA-HTSDVNTV 282 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~-~~~~v~~~ 282 (498)
.......+... .+| +++. -+++..+.|+.+ ..+..||..+++....-.. ....-.++
T Consensus 370 W~~~~~lp~~r----------~~~-----~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 433 (534)
T PHA03098 370 WREEPPLIFPR----------YNP-----CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA 433 (534)
T ss_pred eeeCCCcCcCC----------ccc-----eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE
Confidence 55433322111 011 1111 256777777632 4588999887665321110 01111223
Q ss_pred EEeCCCCCEEEEeeCC--------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 010883 283 CFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKL 349 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~i 349 (498)
+. .++.+++.|+.+ ..+.+||.... ....+..+.........+.+ +++.++.|+.+ ..+.+
T Consensus 434 ~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 507 (534)
T PHA03098 434 IY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEV 507 (534)
T ss_pred EE--ECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEE
Confidence 33 345666777643 23788887622 11111111111111122222 56677777654 46778
Q ss_pred EeCCC
Q 010883 350 WDIRK 354 (498)
Q Consensus 350 wd~~~ 354 (498)
||..+
T Consensus 508 yd~~~ 512 (534)
T PHA03098 508 YDDKT 512 (534)
T ss_pred EeCCC
Confidence 88766
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.39 E-value=0.75 Score=41.96 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=87.2
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC-CCcee
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTME 211 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~-~~~~~ 211 (498)
..+++.|..+ ..+++| ..+ +.+...+.|....+........+....+....++..++ ++..|.| |... .|+.-
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 4677888643 344544 455 44555555654444332222222333344334443333 3444443 3332 23211
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCE
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 291 (498)
... .. +-.+.+..+.-++||++++++.......-||-........-+.....|..|.|. +++.+
T Consensus 137 ~~~-~~--------------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~l 200 (302)
T PF14870_consen 137 QAV-VS--------------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNL 200 (302)
T ss_dssp EEE-E---------------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-E
T ss_pred eEc-cc--------------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCE
Confidence 111 11 112368888999999988887665555677765433333333456889999998 66666
Q ss_pred EEEeeCCCeEEEEcCc-cccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEE
Q 010883 292 IYSGSDDNLCKVWDRR-CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 348 (498)
Q Consensus 292 l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~ 348 (498)
.+.+ ..|.|++=+.. ....-.+++.....-.-.+..++|.+++...++|+. |.+.
T Consensus 201 w~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~ 256 (302)
T PF14870_consen 201 WMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL 256 (302)
T ss_dssp EEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE
T ss_pred EEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE
Confidence 5544 88888887721 000000111111122234789999998777776654 4443
No 407
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.9 Score=42.77 Aligned_cols=140 Identities=12% Similarity=0.048 Sum_probs=84.1
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883 137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 216 (498)
Q Consensus 137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 216 (498)
+-|. |.+.++.+...|.+.=|-+.....-.........+++|.++.||+|.+.||+--.+.+|.+++....+.......
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 3344 333333333445555565543211111122234456999999999999999999999999999855443332222
Q ss_pred cccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCCCCCEE
Q 010883 217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLI 292 (498)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l 292 (498)
.... .+..|....|+.+ ..+|..+..| +-+|-....+ .++....|...|+-..|+ ++.+.+
T Consensus 107 ~ck~------------k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~ 168 (657)
T KOG2377|consen 107 ECKT------------KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVI 168 (657)
T ss_pred Hhcc------------CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceE
Confidence 2111 1225888999865 5677777666 6666554332 334455788889999998 444433
No 408
>PRK10115 protease 2; Provisional
Probab=96.36 E-value=1.6 Score=45.38 Aligned_cols=196 Identities=12% Similarity=0.048 Sum_probs=100.1
Q ss_pred CceEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC------CeE
Q 010883 132 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 200 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d------~~i 200 (498)
-.+..+.+||||++||.+.. ...|++.|+.+|..+...+ .. .-..++|++|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 44677899999999987643 2358899998874332221 11 11458999999877776542 367
Q ss_pred EEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECC--CCeeeEEEe
Q 010883 201 HIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLE--ANKLSLRIL 273 (498)
Q Consensus 201 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~--~~~~~~~~~ 273 (498)
..+++.++. ...+..-.. .... ..+..+.++++++..+. ++.+.+++.. .+.... +.
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~--------------~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~-~~ 265 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKD--------------DTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV-FL 265 (686)
T ss_pred EEEECCCChhHCeEEEeeCC--------------CCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE-EE
Confidence 888888773 222222110 0011 23344558887665543 3568888843 333222 22
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCC-CeEEEEcCccccCCCceeEEeccc-c-ccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGH-L-EGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~-~-~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
.+...+..-... ..+.+++....+ ...+|..+... .......+..+ . ..|..+.+.. +.++++...++.-+++
T Consensus 266 ~~~~~~~~~~~~-~~~~ly~~tn~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 266 PRRKDHEYSLDH-YQHRFYLRSNRHGKNFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLR 341 (686)
T ss_pred ECCCCCEEEEEe-CCCEEEEEEcCCCCCceEEEecCC--CcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEE
Confidence 333222221112 223333333222 23334333211 11122333334 2 3577777763 3455566667765555
Q ss_pred eC
Q 010883 351 DI 352 (498)
Q Consensus 351 d~ 352 (498)
-+
T Consensus 342 ~~ 343 (686)
T PRK10115 342 QI 343 (686)
T ss_pred EE
Confidence 44
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.15 E-value=0.85 Score=40.21 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=70.2
Q ss_pred EEEEEEcCCC-CEEEEEeCCCe-EEEEECCCCeeeEEEeccCCC--eeEEEEeCCCCCEEEEeeCC-----CeEEEEcCc
Q 010883 237 IFSLKFSTDG-RELVAGSSDDC-IYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD-----NLCKVWDRR 307 (498)
Q Consensus 237 i~~~~~s~~g-~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~ 307 (498)
...|+|+|.. +-++.+-.-|+ ..++|....+....+...++. .-.=.|+ +++.+|+..-.| |.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecc
Confidence 4457788744 44555555554 568898887766555432221 1123676 889999887654 789999987
Q ss_pred cccCCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883 308 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~ 342 (498)
.....+..+..|.-....+.+.+||+.++.+.
T Consensus 149 ---~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 149 ---EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ---cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 24456677888888888999999999988764
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.07 E-value=0.91 Score=43.47 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=94.0
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
.+...|++|+..|.++||+..........+..-..-..+|..+..-. +...||+ =.-..+.+|.+........
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~- 112 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE- 112 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc-
Confidence 34568999999999999998633222222222223457888887532 2234444 4456788888743211100
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC-CcEEEEEecCCeEEEEECCCCcEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQV 440 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~ 440 (498)
+...-.+.....|.........+..+.-... ..+|.+-+-||.+.+|+-+.-...
T Consensus 113 ------------------------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~ 168 (418)
T PF14727_consen 113 ------------------------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS 168 (418)
T ss_pred ------------------------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE
Confidence 0001122333333333333333333322223 467888899999999996654444
Q ss_pred EEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 441 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 441 ~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
..+.. ---...+++++.-..|++++.+..|.-|.+.
T Consensus 169 ~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 169 RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 44432 2222346788888889999999899988874
No 411
>PRK10115 protease 2; Provisional
Probab=95.99 E-value=2.4 Score=44.07 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=69.0
Q ss_pred eeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883 177 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~ 251 (498)
..+..+.|+||+++|+.+... -.|++.|+.++...... + .. .-..++|.+|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i----~~-------------~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L----DN-------------VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c----cC-------------cceEEEEeeCCCEEEE
Confidence 468889999999999886542 26889999877521110 0 00 1145899999987766
Q ss_pred EeCC------CeEEEEECCCC--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCc
Q 010883 252 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRR 307 (498)
Q Consensus 252 g~~d------g~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~ 307 (498)
...+ ..|+.+++.++ +....+........-..+.+.++.+++..+. ++.+.+++..
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 6442 36888999887 3333333323333322333346666555443 3568888854
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.88 E-value=0.72 Score=44.95 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=88.2
Q ss_pred ccCCCCceEEEEEcCCCCE-EEEEE--CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC----CCeEEEEECCCe
Q 010883 127 VDQTTSRAYVSQFSADGSL-FVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRHLVYASMSPI 199 (498)
Q Consensus 127 l~~h~~~v~~~~~s~dg~~-la~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~s~d~~ 199 (498)
|.+.-.+|..++|. ||+. +.+.- .+|.+++=|.. .+ +.-..|..+.|.|- ...|++......
T Consensus 15 L~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---vi-------GqFEhV~GlsW~P~~~~~~paLLAVQHkkh 83 (671)
T PF15390_consen 15 LHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VI-------GQFEHVHGLSWAPPCTADTPALLAVQHKKH 83 (671)
T ss_pred HHhhhccccceEec-CCCEEEEEeeeeeCCccccCCcc---Ee-------eccceeeeeeecCcccCCCCceEEEeccce
Confidence 44445678889997 5544 44432 24444332211 11 11125899999994 335556666789
Q ss_pred EEEEECCCCceec--cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--eEEEecc
Q 010883 200 VHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL--SLRILAH 275 (498)
Q Consensus 200 i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~ 275 (498)
|.||.+....... ........-.-.|+. -...+.|+|....|++-.....-.++++..... ...+ ..
T Consensus 84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pv--------LpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~ 154 (671)
T PF15390_consen 84 VTVWQLCPSTTERNKLLMSQTCEIREPFPV--------LPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KT 154 (671)
T ss_pred EEEEEeccCccccccceeeeeeeccCCccc--------CCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cC
Confidence 9999986322111 111000000001111 123578999998888776665445566654332 2223 56
Q ss_pred CCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCc
Q 010883 276 TSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRR 307 (498)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~ 307 (498)
.+.|.|.+|. .+|+.|+++ +..=.-++||-.
T Consensus 155 ~G~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 SGLIHCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 6889999998 566655544 444456789853
No 413
>PHA03098 kelch-like protein; Provisional
Probab=95.86 E-value=0.48 Score=47.87 Aligned_cols=103 Identities=10% Similarity=0.115 Sum_probs=50.2
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCeeeEEEeccC--CCeeEEEEeCCCCCEEEEeeCC-----CeEEEEcCccccC
Q 010883 245 DGRELVAGSSDD------CIYVYDLEANKLSLRILAHT--SDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNV 311 (498)
Q Consensus 245 ~g~~l~~g~~dg------~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~ 311 (498)
++..++.|+.++ .+..||..+++.. .+.... ..-.+++. .++.+++.|+.+ ..+..||....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-- 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-- 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence 556667776542 5788898877653 222111 11122222 356677778765 34677887522
Q ss_pred CCceeEEeccccccEEEEEEcCCCCEEEEEeCC------CcEEEEeCCC
Q 010883 312 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRK 354 (498)
Q Consensus 312 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~ 354 (498)
.......+....... +++ .-+++..+.|+.+ ..+..||+.+
T Consensus 369 ~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 369 KWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred ceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 111111111111111 111 2256666767632 3467777665
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=95.68 E-value=1.5 Score=41.19 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=87.6
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEE-EECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~v-w~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
...++++.+.|++.+++++. .|.+.. ++ ..+....... ......++++.+.|+++.++++ ..|.+.+=..+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 56789999999988777664 554432 22 2222232221 2334479999999999877665 45766432344443
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe---ccCCCeeEEEEeC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGD 286 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~ 286 (498)
.-.....+.. .-...+.++.+.+++..++ ++.+|.|. .....++.-.... .-......+.|.
T Consensus 247 sW~~~~~~~~------------~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~- 311 (334)
T PRK13684 247 SWSKPIIPEI------------TNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL- 311 (334)
T ss_pred ccccccCCcc------------ccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe-
Confidence 3221111100 0112578899999887554 45677555 3444444333332 222357778886
Q ss_pred CCCCEEEEeeCCCeEEEEcC
Q 010883 287 ESGHLIYSGSDDNLCKVWDR 306 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~ 306 (498)
.++.. +..+..|.|..|+-
T Consensus 312 ~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred CCCce-EEECCCceEEEecC
Confidence 44444 45566788887764
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.67 E-value=1.5 Score=39.20 Aligned_cols=148 Identities=12% Similarity=0.042 Sum_probs=88.2
Q ss_pred eEEEEEeCCCCCeEEEEE---CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 178 TVTDTSLSPDQRHLVYAS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
.+.+.+++++++.++... ....+.++.......... .- ..+..-.|++++...++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g------------------~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TG------------------GSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cC------------------CccccccccCCCCEEEEEcC
Confidence 688999999999888766 334566665443322111 10 14667789999877666666
Q ss_pred CCeEEEEE-CCCCeee-EEEec--cCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCC-----CceeEEeccc
Q 010883 255 DDCIYVYD-LEANKLS-LRILA--HTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVK-----GKPAGVLMGH 322 (498)
Q Consensus 255 dg~i~vwd-~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~-----~~~~~~~~~~ 322 (498)
+...+++. ..++... ..+.. -...|..+.++ +++..++... .++.|.+--+...... ..+.......
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 66666663 3333322 12221 11289999998 7777666555 3467776654311101 1222233334
Q ss_pred cccEEEEEEcCCCCEEEEEeCCC
Q 010883 323 LEGITFIDSRGDGRYLISNGKDQ 345 (498)
Q Consensus 323 ~~~v~~l~~~~~~~~l~s~~~dg 345 (498)
...++.+.|.+++.+++.+...+
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCCC
Confidence 56889999999998777665544
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.63 E-value=1.5 Score=38.83 Aligned_cols=183 Identities=17% Similarity=0.133 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg--~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
..-...+.|..+|.++-+.+.-| .|+.+|+.+++........... ...|+-+ +++.....=.++...+||..+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEcccc
Confidence 33455678878888888887766 6999999999766554443322 2223222 333333444688999999988
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-----CCCeeEE
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTV 282 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~ 282 (498)
-+....+.... .=..++ .|++.|+.......|+++|..+-+...++.-. -..++-+
T Consensus 120 l~~~~~~~y~~-----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 120 LKKIGTFPYPG-----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp TEEEEEEE-SS-----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred ceEEEEEecCC-----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 76655444321 223344 46777777777778999999887776665422 1345667
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec---------------cccccEEEEEEcCCCCEEEEEe
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---------------GHLEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~~v~~l~~~~~~~~l~s~~ 342 (498)
.|. ++.+.|=.=....|...|.. ++.....+. ....-.+.|++.|....|...+
T Consensus 181 E~i--~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYI--NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE--TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEE--cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 774 45444444444556666665 444443321 0134578999998776665544
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=95.49 E-value=1.3 Score=44.00 Aligned_cols=186 Identities=9% Similarity=0.003 Sum_probs=91.8
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC--CeEEEEECCCCceecc
Q 010883 141 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESL 213 (498)
Q Consensus 141 ~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d--~~i~iwd~~~~~~~~~ 213 (498)
.++.++++|+.++ .+..||..++.-.. .............+ .-++...+.|+.+ ..+..||..+++....
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3456667777543 46778887763222 11111111111122 2367777777754 3577888776655444
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCC
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG 289 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 289 (498)
..++.... ....+. -+|+..+.|+.++ .+..||..+++....-. .....-.+++. -++
T Consensus 347 ~~l~~~r~--------------~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~ 408 (480)
T PHA02790 347 PSLLKPRC--------------NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGR 408 (480)
T ss_pred CCCCCCCc--------------ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECC
Confidence 33322110 111122 2677777777553 47788888766533111 11111112222 345
Q ss_pred CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 354 (498)
Q Consensus 290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~ 354 (498)
.+.+.| |.+.+||.... ....+..+.........+.+ +++..+.|+.+ ..+..||..+
T Consensus 409 ~IYv~G---G~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 409 RLFLVG---RNAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEEEC---CceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 666666 35778887522 22222222221222222222 66777788754 3577777765
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.41 Score=47.84 Aligned_cols=180 Identities=12% Similarity=0.048 Sum_probs=90.0
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 232 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (498)
-.|+||+.. |..+.+..-.++ .+..+.|+.+..+ ++...+|++++|++........-...+.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~---~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~ie~~svg~e~------------- 125 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG---ELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEFIESNSVGFES------------- 125 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC---CeeeecccCCceE-EEEeccceEEEeecchhhhccccccccc-------------
Confidence 458888876 434444332222 7889999977665 4567899999999865443221110010
Q ss_pred ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCCeeEEEEeCCCCCEEEEeeCCCeE--EEEcCc
Q 010883 233 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNLC--KVWDRR 307 (498)
Q Consensus 233 h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~s~dg~i--~vwd~~ 307 (498)
....|..+.|..+| +++-..+|.+.+-+-.......++.. ..-+-.|-+..++..+....-.-+-.| .++-..
T Consensus 126 ~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~ 203 (829)
T KOG2280|consen 126 QMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE 203 (829)
T ss_pred ccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence 11135555555566 44444456555543222222222222 111212332222221111111111000 111111
Q ss_pred cccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 308 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
........+....+.+..+.+||+.++|+--..+|.|.+-+....
T Consensus 204 ---~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 204 ---ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred ---cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 011122222222466788999999999999999999988877653
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.41 E-value=2.2 Score=44.12 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCC----------CeE--EEE------EeecCCCceeEEEEEeCCC---CC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GWK--IQK------DILAKSLRWTVTDTSLSPD---QR 189 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~----------~~~--~~~------~~~~~~~~~~v~~~~~sp~---~~ 189 (498)
.-.|..+.+||+|++||..|..|.+.+ .+.. |.. ..+ ..........|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 458999999999999999988764433 3321 111 111 1122344568999999996 57
Q ss_pred eEEEEECCCeEEEEECCCC
Q 010883 190 HLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~ 208 (498)
.|++-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8889899999999999753
No 420
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=1.9 Score=38.36 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=93.3
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
-+.++.++. ++...+..+.-++|.|+.+.........-.. .+--.++.. .|++..++..+.-
T Consensus 88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--------------~gyaygv~v--sGn~aYVadlddg 149 (370)
T COG5276 88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNT--------------DGYAYGVYV--SGNYAYVADLDDG 149 (370)
T ss_pred hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccC--------------CceEEEEEe--cCCEEEEeeccCc
Confidence 466667754 5556666777799999987654333221110 012334444 5888888886666
Q ss_pred EEEEECCCCe---eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883 258 IYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334 (498)
Q Consensus 258 i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 334 (498)
+.+.|+.+.. +..++......-..++.+ +++-+.+..|+-+.+-|+.... ....+... .....+.++..+++
T Consensus 150 fLivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~-sPvli~~~-n~g~g~~sv~vsdn 224 (370)
T COG5276 150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH-SPVLIGSY-NTGPGTYSVSVSDN 224 (370)
T ss_pred EEEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC-CCeEEEEE-ecCCceEEEEecCC
Confidence 7888887654 333444444455677776 6788888899999999996332 11222221 12236788888876
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 335 GRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 335 ~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
-.+++.. +.-+.+-|....+.+
T Consensus 225 r~y~vvy--~egvlivd~s~~ssp 246 (370)
T COG5276 225 RAYLVVY--DEGVLIVDVSGPSSP 246 (370)
T ss_pred eeEEEEc--ccceEEEecCCCCCc
Confidence 5555544 334677777665433
No 421
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=1.8 Score=36.41 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=93.3
Q ss_pred CCCEEEEEeCC--CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883 245 DGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 322 (498)
Q Consensus 245 ~g~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 322 (498)
+|.++.+.+.- ..|++||+.+++.+....-....+..=-...-.+.+..-.-.+|.-..+|.+ ..+.+..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~----t~~~lg~~~y- 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD----TLEELGRFSY- 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH----Hhhhhccccc-
Confidence 45566665543 4699999999987655432211111111110112222233457788888887 4444443331
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883 323 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 402 (498)
Q Consensus 323 ~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (498)
.+.=+.++. |+..|+.+....+++.-|..+...... ...+..+.. ..
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~------------------------------v~VT~~g~p-v~ 176 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT------------------------------VQVTDDGVP-VS 176 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcce------------------------------EEEEECCee-cc
Confidence 223344443 455566666666777777665432211 111112111 11
Q ss_pred EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec------------cCCCCeeeeEEcCCCC-eEEEE
Q 010883 403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------------YHTSPVRDCSWHPSQP-MLVSS 465 (498)
Q Consensus 403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------------~h~~~v~~l~~sp~~~-~l~s~ 465 (498)
.+....|- ||.+.|-.-.+..|...|..+|+.+.-+. .|..-.+.+++.|++. +++||
T Consensus 177 ~LNELE~V-----dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 177 KLNELEWV-----DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccceeee-----ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11111111 56666666666777777777887765543 2445678899999884 66665
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.00 E-value=0.6 Score=46.85 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC--CCCCeEEEEECCCeEEEEECCCCcee
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~s~d~~i~iwd~~~~~~~ 211 (498)
..-+.-|.-++..++-+....+.|||...+........ ...+.|.++.|. |+++.+++.+..+.|.++.-......
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444444555555555556799999998753333222 335589999985 68999999999999999864311100
Q ss_pred ccccccccccCccccccCCCCce-ecEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRELVAGSSDDCIYVYDLE 264 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~ 264 (498)
...........+... .|+ .+|.+..|.++|.. ++|+ ++.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~-----~~T~h~Igds~Wl~~G~L-vV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDIS-----SHTPHPIGDSIWLKDGTL-VVGS-GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEee-----cCCCCCccceeEecCCeE-EEEe-CCEEEEECCC
Confidence 000000000000000 122 37899999999964 4443 3568888743
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.90 E-value=1.7 Score=41.36 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883 132 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVER--GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~-----------~dg-~i~vw~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d 197 (498)
.....++|.++|+++++-. ..+ .|.+++-.+ |..-......... .....+++.+++ ++ +++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-~~p~Gi~~~~~G-ly-V~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-SMVTGLAVAVGG-VY-VATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-CCccceeEecCC-EE-EeCCC
Confidence 3456789999999887753 223 677776433 2211111222222 246889999988 44 44444
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-------------------CeE
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------------------DCI 258 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-------------------g~i 258 (498)
...++.+........ ........++. .. ...+......++|.|||.+.++-+.. |.|
T Consensus 91 ~i~~~~d~~gdg~ad-~~~~~l~~~~~--~~-~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 91 DILFLRDKDGDDKAD-GEREVLLSGFG--GQ-INNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred eEEEEeCCCCCCCCC-CccEEEEEccC--CC-CCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 333343543211000 00000000100 00 00012357789999999866654421 345
Q ss_pred EEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe
Q 010883 259 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 295 (498)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 295 (498)
.-++..+++.. .+...-.....++|+ ++++++++-
T Consensus 167 ~r~~pdg~~~e-~~a~G~rnp~Gl~~d-~~G~l~~td 201 (367)
T TIGR02604 167 FRYNPDGGKLR-VVAHGFQNPYGHSVD-SWGDVFFCD 201 (367)
T ss_pred EEEecCCCeEE-EEecCcCCCccceEC-CCCCEEEEc
Confidence 55565554432 222222334678886 567776553
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.49 Score=49.58 Aligned_cols=150 Identities=9% Similarity=0.003 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCCeEEEEE--CCCeEEEEECCCCceecccccc---ccccCccccccCCCCceecEEEEEEcCCCC-EEEE
Q 010883 178 TVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVT---EIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVA 251 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s--~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~ 251 (498)
+|..+...+|+...++.. .+-.|..||+.+-......... ...... ....-..++.|+|.-. ..++
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~--------ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF--------EKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh--------ccccccccccccCCccchhhh
Confidence 566677778876655543 3347889998754322211100 000000 0112466788988432 3566
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----ccccEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGIT 327 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~v~ 327 (498)
...|+.|++..+........-.......++++|+ +.|..++.|-..|++.-|... ......+.+ ....|.
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl 247 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVL 247 (1405)
T ss_pred hccccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCccee
Confidence 7788999988776543332223456678999998 789999999999999988763 222222221 136789
Q ss_pred EEEEcCCCCEEEEE
Q 010883 328 FIDSRGDGRYLISN 341 (498)
Q Consensus 328 ~l~~~~~~~~l~s~ 341 (498)
+|.|-....++++-
T Consensus 248 ~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 248 SVTWLSTQEFLVVY 261 (1405)
T ss_pred EEEEecceeEEEEe
Confidence 99998766666543
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.86 E-value=0.17 Score=30.34 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.0
Q ss_pred CceEEEEEcCCC---CEEEEEECCCeEEEEECCCC
Q 010883 132 SRAYVSQFSADG---SLFVAGFQASQIRIYDVERG 163 (498)
Q Consensus 132 ~~v~~~~~s~dg---~~la~~~~dg~i~vw~~~~~ 163 (498)
++|.+++|||+. .+||.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58998888899999999864
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=94.85 E-value=2.5 Score=41.97 Aligned_cols=103 Identities=7% Similarity=-0.085 Sum_probs=49.8
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCC--CeEEEEcCccccCCCce
Q 010883 245 DGRELVAGSSD-----DCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKP 315 (498)
Q Consensus 245 ~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~ 315 (498)
++..+++|+.+ ..+..||..+++....-. ..... .+++. -++.+.+.|+.+ ..+..||.... ....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n--~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDA--AWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECCCC--eEEE
Confidence 45556777654 257788888766432211 11111 22222 356777777754 35777876411 1122
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEeCCC
Q 010883 316 AGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRK 354 (498)
Q Consensus 316 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~ 354 (498)
+..+.........+ .-+|+..+.|+.++ .+..||.++
T Consensus 346 ~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 346 MPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence 22222111111122 22567777777553 355666654
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.77 E-value=2.1 Score=43.69 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=92.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEE------Eee-------------cCCCceeEEEEEeCC--CCCeEEEEECCCeEE
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQK------DIL-------------AKSLRWTVTDTSLSP--DQRHLVYASMSPIVH 201 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~------~~~-------------~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~ 201 (498)
+++|+++. .+.|.||+.+.-..... ... .......|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777775 67899999864322110 000 000112466665544 456888999999999
Q ss_pred EEECCCCc--eecc-ccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eeeE-EEe
Q 010883 202 IVDVGSGT--MESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN--KLSL-RIL 273 (498)
Q Consensus 202 iwd~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~dg~i~vwd~~~~--~~~~-~~~ 273 (498)
+|.+++=. .... .............+.-.......++.++++ ...++||+++....|.||-.... +... .-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 99764210 0000 000000000000000000122378899998 78888999988888888755432 1111 111
Q ss_pred ccCCCeeEEEEeCCC----CC-EEEEeeCCCeEEEEcC
Q 010883 274 AHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVWDR 306 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~----~~-~l~s~s~dg~i~vwd~ 306 (498)
.|...|.+|+|.+.+ |. .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 356678999997443 22 7888999999998887
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.73 E-value=1.8 Score=43.65 Aligned_cols=111 Identities=21% Similarity=0.200 Sum_probs=69.8
Q ss_pred EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeCCC
Q 010883 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDD 256 (498)
Q Consensus 179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~dg 256 (498)
++-+.-+.-++.-++-+....+.|||...+......... ..+.|.++.|. |+|+.+++.+..+
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~---------------~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS---------------EDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec---------------CCCceeeceeeecCCCCEEEEEEcCc
Confidence 334444454554445444568999999988744333321 12378899886 5888888888888
Q ss_pred eEEEEECC---------CCeeeEEE--eccC-CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 257 CIYVYDLE---------ANKLSLRI--LAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 257 ~i~vwd~~---------~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
.|.+|--. +...+..+ ..|+ .+|.+..|. .+|.+++.+ .+.+.|+|-.
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL-KDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe-cCCeEEEEe--CCEEEEECCC
Confidence 99988431 11222322 2344 578999997 667655544 3578888753
No 429
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.78 Score=43.16 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=68.2
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883 235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310 (498)
Q Consensus 235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 310 (498)
++|.++.|++|.+.||+--.+.+|.+++....+....+ ......|....|+ .+ .-++.-+..| +-+|...
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~--- 140 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL--- 140 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc---
Confidence 38999999999999999999999999998544432222 1233458889997 33 4444444433 4445433
Q ss_pred CCCceeEEeccccccEEEEEEcCCCCEEEEEe
Q 010883 311 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~ 342 (498)
.....++..+.|...|.-..|.++.+.++-++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 13345556667888888888888877654433
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.53 E-value=7.2 Score=40.91 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=70.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-----eEEEEEeC----------------CCCCeEEEEECCCeEE
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLS----------------PDQRHLVYASMSPIVH 201 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~~~~s----------------p~~~~l~~~s~d~~i~ 201 (498)
+..|+.++.++.|.-.|..+|+.+-+......... ....+++- ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777888899999999877666433221110 01112221 1345788888999999
Q ss_pred EEECCCCceecccccccc---ccCccccccCCCCceecEEEEEEcC--CCCEEEEEeC----------CCeEEEEECCCC
Q 010883 202 IVDVGSGTMESLANVTEI---HDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEAN 266 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~----------dg~i~vwd~~~~ 266 (498)
-.|.++|+....+..... ..++.. ....-..+.-.| .+..+++|+. +|.|+-+|.+++
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~-------~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGT-------TPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCc-------CCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 999999987654332110 000000 000000011111 1335666643 688999999999
Q ss_pred eeeEEEe
Q 010883 267 KLSLRIL 273 (498)
Q Consensus 267 ~~~~~~~ 273 (498)
+.+-++.
T Consensus 347 kl~W~~~ 353 (764)
T TIGR03074 347 ALVWAWD 353 (764)
T ss_pred cEeeEEe
Confidence 9887765
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.38 E-value=0.14 Score=30.68 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCeeEEEEeCCCC--CEEEEeeCCCeEEEEcCc
Q 010883 277 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 277 ~~v~~~~~~~~~~--~~l~s~s~dg~i~vwd~~ 307 (498)
+.|.++.|+|..+ .+|+.+-..|.|.++|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999996666 799999999999999998
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.38 E-value=1 Score=43.03 Aligned_cols=144 Identities=15% Similarity=0.230 Sum_probs=86.2
Q ss_pred CCCeEEE-EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-------EEEEEeCCCeE
Q 010883 187 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 258 (498)
Q Consensus 187 ~~~~l~~-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-------~l~~g~~dg~i 258 (498)
+..+|.. +.....++-.|++.|+.+..+.... .+ -+.|.|+.+ .-++|-.+..|
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~sv 539 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSV 539 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeecccce
Confidence 4444443 4445567777888887766655432 22 455666432 12344445556
Q ss_pred EEEECCCCeeeEEEeccC-----CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 259 YVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
.-.|.+...-........ ....|..- ....++++++..|-|++||.- .......+.+....|..+..+.
T Consensus 540 FrIDPR~~gNKi~v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta 613 (776)
T COG5167 540 FRIDPRARGNKIKVVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred EEecccccCCceeeeeehhcccccccccccc--ccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeec
Confidence 556654322111111222 22233332 345689999999999999974 3334445666778899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 010883 334 DGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 334 ~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
+|+++++.+. ..+.+-|++-.
T Consensus 614 ~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 614 NGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred CCcEEEEeec-ceEEEEecccc
Confidence 9999887765 46888887653
No 433
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.33 E-value=4.6 Score=37.76 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCe------EEEEECCC--C----eEEEEEeecCCCce--------eEEEEEeCCCCCe
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVER--G----WKIQKDILAKSLRW--------TVTDTSLSPDQRH 190 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~------i~vw~~~~--~----~~~~~~~~~~~~~~--------~v~~~~~sp~~~~ 190 (498)
-+.+..+.+.+++..+++.+.+|. +..+++.. + -.+..........+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788899976666777777777 55555443 1 01111111111111 3447788778887
Q ss_pred EEEEECC------CeEEEEECCCCceeccccccccccCcccccc--CCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 191 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 191 l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
+++.-.+ ..|..++.. |+......++.... .... ..........+|+++|+|+.|+++..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~---~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFL---PDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccc---cccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 7776666 788888876 55544333322110 0000 11223457999999999997776643
No 434
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.28 E-value=5.2 Score=38.28 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=33.4
Q ss_pred CCCEEEEEEC-CCeEEEEECCCC-eEEEEEeecCC-CceeEEEEEeCCCCCeEEEEECC-----------CeEEEEECCC
Q 010883 142 DGSLFVAGFQ-ASQIRIYDVERG-WKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMS-----------PIVHIVDVGS 207 (498)
Q Consensus 142 dg~~la~~~~-dg~i~vw~~~~~-~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~s~d-----------~~i~iwd~~~ 207 (498)
++++.+.|+. +..+.++|+... ........... .+.....+ .-++++.+.|+.. ..+..||..+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v--~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~ 115 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA--FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEE--EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence 5555555543 445777887531 11111111111 11111122 2356677777643 2477788877
Q ss_pred Cceecc
Q 010883 208 GTMESL 213 (498)
Q Consensus 208 ~~~~~~ 213 (498)
.+....
T Consensus 116 n~W~~~ 121 (376)
T PRK14131 116 NSWQKL 121 (376)
T ss_pred CEEEeC
Confidence 665444
No 435
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=5.4 Score=43.21 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER 162 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~ 162 (498)
......++|+|...++|.+...|.|.+|-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 44567789999999999999999999998754
No 436
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.08 E-value=5.6 Score=37.87 Aligned_cols=190 Identities=13% Similarity=0.130 Sum_probs=86.2
Q ss_pred EEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE--------------
Q 010883 136 VSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-------------- 195 (498)
Q Consensus 136 ~~~~s~dg~~la~~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-------------- 195 (498)
.+..-|+|+.++++-. -|-+.++|-++-+.............--.++-|.|..+.++++.
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 3444578888887532 24577888776544433333223333456778888888888764
Q ss_pred ------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEE-eCCCeEEEEEC-CC
Q 010883 196 ------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAG-SSDDCIYVYDL-EA 265 (498)
Q Consensus 196 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g-~~dg~i~vwd~-~~ 265 (498)
....+++||+.+.+.++.+.+.... ..+..++|.. +..+=++| --..+|..|-- ..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTE--------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCC--------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 2358999999999887777655321 1355677754 34433333 33455655533 33
Q ss_pred Cee----eEEEecc-----------------CCCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEe-cc-
Q 010883 266 NKL----SLRILAH-----------------TSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVL-MG- 321 (498)
Q Consensus 266 ~~~----~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~-~~- 321 (498)
++. +..+... ..-|+.|..| .+.++|+.+. .+|.|+.||+.... ..+.+... .+
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP~-~Pkl~gqv~lGG 357 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDPF-NPKLVGQVFLGG 357 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SSTT-S-EEEEEEE-BT
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCCC-CCcEEeEEEECc
Confidence 332 1222111 3457899998 6666666554 68999999997332 12222211 11
Q ss_pred --------------ccccEEEEEEcCCCCEEEEE
Q 010883 322 --------------HLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 322 --------------~~~~v~~l~~~~~~~~l~s~ 341 (498)
-.+...-+..|.||+.|...
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 11234567777788777654
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=0.43 Score=49.97 Aligned_cols=115 Identities=12% Similarity=-0.001 Sum_probs=76.8
Q ss_pred cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeE-----EEe------ccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883 236 GIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSL-----RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCK 302 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 302 (498)
+|..+...+|+...++.. .+-.|+.||+++-.... -+. .......++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 566777777876555443 33378899987532211 111 22345577889865566678888999999
Q ss_pred EEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 303 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+..+. .......-..-....++++|+|.|+.++.|-..|++.-|...-
T Consensus 182 V~~~~----~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTK----QLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhh----hhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 98875 2222211122456789999999999999999999998887543
No 438
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=3.5 Score=44.42 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=31.0
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 321 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 321 ~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
.+.++|..+.....-..+.+-+..++|.+||+...
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 56789999999888888999999999999999873
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=10 Score=38.56 Aligned_cols=192 Identities=10% Similarity=0.149 Sum_probs=91.0
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--e--ccccccEEEEEE
Q 010883 256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L--MGHLEGITFIDS 331 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~--~~~~~~v~~l~~ 331 (498)
-.|+|+++. |..+.++.-..+.+-.+.|+ +.+.|++...+|++++|++- +..+.. . ......|..+.+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-----hhhhcccccccccccCceeEEEE
Confidence 458888874 55555554444588899996 45567788899999999984 222222 1 112233555555
Q ss_pred cCCCCEEEEEeCCCcEE-EEeCCCCCCccccccCc---ccccccceeecCCcCccc-cc-----CCCCceEEEEccCcee
Q 010883 332 RGDGRYLISNGKDQAIK-LWDIRKMSSNASCNLGF---RSYEWDYRWMDYPPQARD-LK-----HPCDQSVATYKGHSVL 401 (498)
Q Consensus 332 ~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~ 401 (498)
..+|-.+++. +|.+. +-+............+. ....|....-.+.+.... +. +.+.........|..
T Consensus 136 f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~- 212 (829)
T KOG2280|consen 136 FHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL- 212 (829)
T ss_pred ecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc-
Confidence 4455433333 33333 33332211110000000 011122111111110000 00 000000000001110
Q ss_pred EEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCC
Q 010883 402 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQ 459 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~ 459 (498)
............||+.++|+--...|.|.+-+....+....+. .|. +--.++|+-+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 0001112223567789999999999999999988877776665 332 23366675444
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.34 E-value=0.071 Score=53.97 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=66.9
Q ss_pred ceecEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEEE-----eccCCCeeEEEEeC--CCCCEEEEeeCCCeEE
Q 010883 233 YSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRI-----LAHTSDVNTVCFGD--ESGHLIYSGSDDNLCK 302 (498)
Q Consensus 233 h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~--~~~~~~~~-----~~~~~~v~~~~~~~--~~~~~l~s~s~dg~i~ 302 (498)
..+.+..++|-. +-..++ -.-|.+.|||+. .|+....+ .....++.-+.|+| .+.-++..+..++.|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 344666777643 111122 233678888875 34332222 23334556666654 3456777788888888
Q ss_pred EEcCccccCCCceeEEeccccccEEEEE-----------EcCCCCEEEEEeCCCcEEEEeCC
Q 010883 303 VWDRRCLNVKGKPAGVLMGHLEGITFID-----------SRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
+.... ......+.+|...++.++ .+|||..++.++.||.+++|.+-
T Consensus 209 lL~~~-----ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 209 LLNIN-----RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred Eeeec-----hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 87653 112234445666555443 57888888888888888887654
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.04 E-value=10 Score=38.95 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=72.5
Q ss_pred cEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------C----e---------eeEEEeccCCCeeEEEEeC-CCCCEE
Q 010883 236 GIFSLKFST--DGRELVAGSSDDCIYVYDLEA-------N----K---------LSLRILAHTSDVNTVCFGD-ESGHLI 292 (498)
Q Consensus 236 ~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~~-~~~~~l 292 (498)
.|+.|.... +...|+++..||.|.+|.+++ . + +...+ .-...++.++++. ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 466665544 456889999999999996631 0 0 11111 2234678888851 346788
Q ss_pred EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---C---EEEEEeCCCcEEEEeC
Q 010883 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---R---YLISNGKDQAIKLWDI 352 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~---~l~s~~~dg~i~iwd~ 352 (498)
|+++....|.||-....+... ....-..+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~-~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERF-YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccc-ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888665221111 111111256678888887643 2 7788899999999888
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.49 E-value=1.4 Score=38.36 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=52.5
Q ss_pred eCCCCCeEEEEECCCeEEEEECCCCceeccc-cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 010883 184 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 262 (498)
Q Consensus 184 ~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd 262 (498)
+..++++|++.+.+|.+++||+.+++..... .+...-.... .........|..+.++.+|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 4457889999999999999999988764333 1111111000 00003344789999998888776654 57889998
Q ss_pred CCCCee
Q 010883 263 LEANKL 268 (498)
Q Consensus 263 ~~~~~~ 268 (498)
..-+..
T Consensus 94 ~~L~~W 99 (219)
T PF07569_consen 94 PDLGCW 99 (219)
T ss_pred ccccee
Confidence 765544
No 443
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.43 E-value=8.8 Score=35.37 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=55.1
Q ss_pred CCCeEEEEECCCeEEEEECCC--CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 010883 187 DQRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL 263 (498)
Q Consensus 187 ~~~~l~~~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~ 263 (498)
++++|+.|+.+|.. +.++.. ++...... ...|+++...+.-+.|++-+ ....++++++
T Consensus 12 ~~~~lL~GTe~Gly-~~~~~~~~~~~~kl~~------------------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 12 DGKWLLVGTEEGLY-VLNISDQPGTLEKLIG------------------RRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred CCcEEEEEeCCceE-EEEcccCCCCeEEecC------------------cCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 34689999999854 444543 22222222 22799999998777666554 3345999998
Q ss_pred CCCee---------------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcC
Q 010883 264 EANKL---------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 306 (498)
Q Consensus 264 ~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~ 306 (498)
..-.. ......|.......+........++++....+|.++..
T Consensus 73 ~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~ 130 (302)
T smart00036 73 SALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQW 130 (302)
T ss_pred HHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEc
Confidence 43221 01122444434444443222234455555667777644
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.42 E-value=1 Score=39.10 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=53.4
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe----ecC-------CCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDI----LAK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 138 ~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~----~~~-------~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~ 206 (498)
.+..++++|++-+.+|.+++||+.+++.+.... ... .....|..+.++.+|.-|++-+ +|....|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 355678899999999999999999885544331 011 2445789999998888777665 5788999877
Q ss_pred CCceec
Q 010883 207 SGTMES 212 (498)
Q Consensus 207 ~~~~~~ 212 (498)
-+....
T Consensus 96 L~~W~~ 101 (219)
T PF07569_consen 96 LGCWIR 101 (219)
T ss_pred cceeEE
Confidence 655433
No 445
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.38 E-value=10 Score=35.85 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=17.8
Q ss_pred CCCeEEEEECC-----------CeEEEEECCCCceecc
Q 010883 187 DQRHLVYASMS-----------PIVHIVDVGSGTMESL 213 (498)
Q Consensus 187 ~~~~l~~~s~d-----------~~i~iwd~~~~~~~~~ 213 (498)
++++.+.|+.+ ..+..||..+.+....
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~ 100 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL 100 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecC
Confidence 67777777753 2477788877765544
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.21 E-value=2.4 Score=40.64 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=90.3
Q ss_pred CCCCEEE-EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-------EEEEEeCCCcEEEEeCCCCCCc
Q 010883 287 ESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-------YLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 287 ~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
.+..+|+ .|.....++--|+. .++.+..+.-|... -+.|.|+.+ .-++|-.+..|.-.|.+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIE----rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g-- 548 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIE----RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG-- 548 (776)
T ss_pred CCcceEEecCCCcccceeeecc----cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC--
Confidence 4444444 44555667777777 78888888777654 466777432 12334455556666665422
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
..+....... ......|+........|+|+|+..|.|++||--.-+
T Consensus 549 -------------------------------NKi~v~esKd---Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r 594 (776)
T COG5167 549 -------------------------------NKIKVVESKD---YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR 594 (776)
T ss_pred -------------------------------Cceeeeeehh---ccccccccccccccCceEEEecCCCceeeehhhcch
Confidence 1111111110 111112222333356799999999999999965544
Q ss_pred EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 439 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 439 ~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
....+.+-...|..+..+.+|+++++.+. ..+.+-|+...
T Consensus 595 AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 595 AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecccc
Confidence 45556677788999999999997766654 46667776543
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.02 E-value=4.8 Score=31.38 Aligned_cols=122 Identities=11% Similarity=0.165 Sum_probs=71.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
-.|......|++++.-|+|.|++.......... ....+..+.-......+....
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------------------------~~~~i~~LNin~~italaaG~ 57 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------------------------QDSDISFLNINQEITALAAGR 57 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc--------------------------ccCceeEEECCCceEEEEEEe
Confidence 356666667888999999999988763322110 124455555555444554444
Q ss_pred eccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC---CCCeEEEEeCCCcEEEecCCCCC
Q 010883 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP---SQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+.+ +.+...|+.|+. ..+..||+....-+..-.. ...|+++.+-. ...-|+..+.+..|.-+|..+.+
T Consensus 58 l~~--~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 58 LKP--DDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCC--CCCcCEEEEecc-ceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 444 234556777765 5599999988766544332 35577776632 12234444446667666665543
No 448
>PLN02193 nitrile-specifier protein
Probab=91.90 E-value=14 Score=36.58 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=54.4
Q ss_pred CCCeEEEEECC-----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----C
Q 010883 187 DQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----D 256 (498)
Q Consensus 187 ~~~~l~~~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g 256 (498)
++++.+.|+.+ +.+.++|+.+.+.......... +.....| +++. -++++++.|+.+ .
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~-------P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~ 294 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG-------PTPRSFH-----SMAA-DEENVYVFGGVSATARLK 294 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC-------CCCccce-----EEEE-ECCEEEEECCCCCCCCcc
Confidence 56666777654 3588889888766544322110 0001112 1222 256667777654 3
Q ss_pred eEEEEECCCCeeeEEEe-----ccCCCeeEEEEeCCCCCEEEEeeCC----CeEEEEcCc
Q 010883 257 CIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRR 307 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~vwd~~ 307 (498)
.+..||+.+.+....-. ..... ..++. .++++++.++.+ ..+.+||+.
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV--VQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE--ECCcEEEEECCCCCccCceEEEECC
Confidence 47788888766432111 01111 12222 245677777655 458888886
No 449
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.86 E-value=12 Score=35.76 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCeeeEEEeccCCCe--eEEEEeCCCCCEEEEeeCC
Q 010883 245 DGRELVAGSSD-----------DCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD 298 (498)
Q Consensus 245 ~g~~l~~g~~d-----------g~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~d 298 (498)
++.+.+.|+.+ ..+..||..+.+....-....... .+.... .++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence 56677777643 247788988766433211111111 111221 356777777754
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=7.2 Score=32.98 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEe------------ccCCCeeEEEEeCCCCCEEEEee
Q 010883 245 DGRELVAGSSDDCIYVYDLEANKLSLRIL------------AHTSDVNTVCFGDESGHLIYSGS 296 (498)
Q Consensus 245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~l~s~s 296 (498)
||...|-.-.+..|...|.++|+.+.-+. .|..-.+.+++.|..++++++|-
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 44444433344455556666666554332 34456778898766667777763
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.80 E-value=5.9 Score=33.77 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=62.7
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---C---eEEEE-
Q 010883 189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY- 261 (498)
Q Consensus 189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---g---~i~vw- 261 (498)
+.|..+.....|.+|++..........+.... .|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~---------------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVG---------------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchh---------------heeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 44444456678999999855554444444332 79999999999999996432 2 45664
Q ss_pred --ECC--CCeeeE-EEec---------------------cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 262 --DLE--ANKLSL-RILA---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 262 --d~~--~~~~~~-~~~~---------------------~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
... ..+++. ++.+ -..++.+++..|-.|++++.+ ++.+.+|.+.
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 221 111111 1112 234567788777778776543 4578888775
No 452
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=3.8 Score=44.36 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
....++|+|.-.+++.++..|.|.++-...-+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceE
Confidence 56678999999999999999999999765443
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.73 E-value=0.026 Score=52.96 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=95.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EECCCeEEEEECCCCceecc
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s~d~~i~iwd~~~~~~~~~ 213 (498)
....|-|.+.-++.++.+..+..||-... .... ....+...+++|..++..++. +-..+.+.+|++.+.....+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le----~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILE----LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eecc----cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34567777766888888888999996643 2222 223335677888888775554 55678899999987544332
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 293 (498)
.... .|+... +.|++.+..++.+...|.+.|++..+.+.....-.|...++++++. ..+ +.+
T Consensus 113 E~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~vi 174 (615)
T KOG2247|consen 113 ESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-YVI 174 (615)
T ss_pred hccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-eee
Confidence 2211 122122 7899999999999999999999988877666665599999999997 433 444
Q ss_pred EeeCC
Q 010883 294 SGSDD 298 (498)
Q Consensus 294 s~s~d 298 (498)
.++.|
T Consensus 175 l~dcd 179 (615)
T KOG2247|consen 175 LCDCD 179 (615)
T ss_pred ecCcH
Confidence 44444
No 454
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.71 E-value=11 Score=35.07 Aligned_cols=137 Identities=9% Similarity=0.037 Sum_probs=67.0
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeE---EEEEeecCCCceeEEEEEeCCCCCeEEEEEC-----CCeEEEEECCCC
Q 010883 142 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG 208 (498)
Q Consensus 142 dg~~la~~~~d-----g~i~vw~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-----d~~i~iwd~~~~ 208 (498)
++.+++.|+.+ ..+..||+.+..- .................. -++++.+.|+. ...+..||..+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 56677777754 3566777766532 111111111111111122 25666677664 236888888877
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeeeEEEecc---CCC---
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLRILAH---TSD--- 278 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~---~~~--- 278 (498)
+......++... .....+..-++++.+.|+.++ .+.+||..+.+... +... ..+
T Consensus 150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~p~~~ 213 (323)
T TIGR03548 150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK-VADPTTDSEPISL 213 (323)
T ss_pred CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE-CCCCCCCCCceec
Confidence 665443222100 011112223567777777653 35688988776432 2111 011
Q ss_pred --eeEEEEeCCCCCEEEEeeCC
Q 010883 279 --VNTVCFGDESGHLIYSGSDD 298 (498)
Q Consensus 279 --v~~~~~~~~~~~~l~s~s~d 298 (498)
...+.. .++.+++.|+.+
T Consensus 214 ~~~~~~~~--~~~~iyv~GG~~ 233 (323)
T TIGR03548 214 LGAASIKI--NESLLLCIGGFN 233 (323)
T ss_pred cceeEEEE--CCCEEEEECCcC
Confidence 112222 356788888866
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.65 E-value=13 Score=35.51 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCCeEEEEE-----------CCC-eEEEEECCC--CceeccccccccccCccccccCCCCceecEEEEEEc
Q 010883 178 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 243 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s-----------~d~-~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 243 (498)
....|+|.++|+++++-. ..+ .|.+++-.+ ++......+.. ++ .....+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l-----------~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---EL-----------SMVTGLAVA 80 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CC-----------CCccceeEe
Confidence 567889999999777643 123 676666432 22211111111 10 135778898
Q ss_pred CCCCEEEEEeCCCeEEEE-ECCCC-----ee--eE-EEec----cCCCeeEEEEeCCCCCEEEEeeCC------------
Q 010883 244 TDGRELVAGSSDDCIYVY-DLEAN-----KL--SL-RILA----HTSDVNTVCFGDESGHLIYSGSDD------------ 298 (498)
Q Consensus 244 ~~g~~l~~g~~dg~i~vw-d~~~~-----~~--~~-~~~~----~~~~v~~~~~~~~~~~~l~s~s~d------------ 298 (498)
++| |+++... .|..+ |.... +. +. .+.. +......++|. +++.+.++-+..
T Consensus 81 ~~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 81 VGG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred cCC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCcc
Confidence 888 4444444 35444 54321 11 11 1211 12346788997 677765544421
Q ss_pred -------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC
Q 010883 299 -------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 343 (498)
Q Consensus 299 -------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~ 343 (498)
|.|.-++.. +.....+.........++|+|+|+++++-..
T Consensus 157 ~~~~~~~g~i~r~~pd-----g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPD-----GGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CcccccCceEEEEecC-----CCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 334444442 2222222222234568899999988776443
No 456
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.55 E-value=10 Score=34.24 Aligned_cols=223 Identities=15% Similarity=0.188 Sum_probs=116.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECC------CC-eeeEEEec-----cCCCeeEEEEeCCC-----------CCEE
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLE------AN-KLSLRILA-----HTSDVNTVCFGDES-----------GHLI 292 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-----------~~~l 292 (498)
.-+.|+++|.+.+-++....+...+||.. .. .++..+.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46789999999877877778899999986 12 22333331 23467888886221 1236
Q ss_pred EEeeCCCeEEEEcCccccCC-CceeEEec-cccccE-EEEEEc--CCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcc
Q 010883 293 YSGSDDNLCKVWDRRCLNVK-GKPAGVLM-GHLEGI-TFIDSR--GDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~-~~~~~~~~-~~~~~v-~~l~~~--~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
+.+++||+|.-|........ ......+. .....| ..+++- ..+.+|. +--..++|.+||-.-...... ..+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~--g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP--GSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC--CCcc
Confidence 78889999999986411100 01111221 111222 334443 2344444 444678888887543221100 0000
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 444 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 444 (498)
....+ ..+.| -.+..+.+.- -+.+.. -.++++.=+.|-.-|.|-+||+ .|+.+.++.
T Consensus 182 DP~iP---agyAP----------FnIqnig~~l------yVtYA~-qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~ 240 (336)
T TIGR03118 182 DPALP---AGYAP----------FNVQNLGGTL------YVTYAQ-QDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS 240 (336)
T ss_pred CCCCC---CCCCC----------cceEEECCeE------EEEEEe-cCCcccccccCCCcceEEEEcC-CCcEEEEeccC
Confidence 00000 00000 0011111110 000110 1123333344555688999997 678888774
Q ss_pred cCCCCeeeeEEcC------CCCeEEEEeCCCcEEEecCCCCCC
Q 010883 445 YHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 445 ~h~~~v~~l~~sp------~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+.-..-+.++..| .+.+|+---.||+|..+|..++..
T Consensus 241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 2334556777765 455677666799999999886653
No 457
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.32 E-value=11 Score=34.09 Aligned_cols=231 Identities=11% Similarity=0.122 Sum_probs=119.2
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCc----eec-cccccccccCccccccCCCCceecEEEEEEcCCCC-----
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT----MES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR----- 247 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~----- 247 (498)
.-..|+++|.+.+.++....+...+||..... ... ...++.. ....-....+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~---------~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP---------PPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC---------CCCCCCCCccEEEEeCCCceEEcC
Confidence 35678999999888887778899999986211 100 1111100 0000112355555553222
Q ss_pred -------EEEEEeCCCeEEEEECCCCee-----eEEEe-ccCCCe-eEEEEeC-CCCCEEEEe-eCCCeEEEEcCccccC
Q 010883 248 -------ELVAGSSDDCIYVYDLEANKL-----SLRIL-AHTSDV-NTVCFGD-ESGHLIYSG-SDDNLCKVWDRRCLNV 311 (498)
Q Consensus 248 -------~l~~g~~dg~i~vwd~~~~~~-----~~~~~-~~~~~v-~~~~~~~-~~~~~l~s~-s~dg~i~vwd~~~~~~ 311 (498)
.++.+++||+|.-|...-+.. ...+. .....| ..+++.. ..+.+|+.+ -..++|.|||-.
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~---- 170 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS---- 170 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc----
Confidence 367788999999998533222 11221 112333 3455531 224455544 457899999864
Q ss_pred CCceeEE---eccc-----cc-----------cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883 312 KGKPAGV---LMGH-----LE-----------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 372 (498)
Q Consensus 312 ~~~~~~~---~~~~-----~~-----------~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 372 (498)
..++.. +... -. .|+...-.++.+.=+.+..-|.|-+||+..
T Consensus 171 -f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G------------------ 231 (336)
T TIGR03118 171 -FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG------------------ 231 (336)
T ss_pred -cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC------------------
Confidence 111111 1100 00 011111122222222233345667776653
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc-c-CCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC---
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV-Y-STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT--- 447 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--- 447 (498)
+.++.+...........+...|. | ...|.+|+---.||+|..||..+++.+..+....
T Consensus 232 -----------------~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 232 -----------------QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred -----------------cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 55555544433333333333322 1 2246666666669999999999999888886433
Q ss_pred ---CCeeeeEEcC
Q 010883 448 ---SPVRDCSWHP 457 (498)
Q Consensus 448 ---~~v~~l~~sp 457 (498)
..++.|+|..
T Consensus 295 i~i~GLWgL~fGn 307 (336)
T TIGR03118 295 VKVDGLWSLTFGN 307 (336)
T ss_pred EEecCeEEeeeCC
Confidence 3467788865
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.77 E-value=11 Score=34.19 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeE
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSL 270 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~ 270 (498)
-..|++||..+.+...... +-.+.|.++.|..+.+.++.|. ....+..||+.+....
T Consensus 15 C~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~- 77 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS- 77 (281)
T ss_pred CCEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-
Confidence 3469999998877654433 2345899999997777666664 3456888999877642
Q ss_pred EEec-----cCCCeeEEEEeCCCCC-EEEEee-C--CCeEEEEcCc
Q 010883 271 RILA-----HTSDVNTVCFGDESGH-LIYSGS-D--DNLCKVWDRR 307 (498)
Q Consensus 271 ~~~~-----~~~~v~~~~~~~~~~~-~l~s~s-~--dg~i~vwd~~ 307 (498)
.+.. -.++|..+.+...+.. +.+.|. . +..|..||=.
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 2322 2478888888544544 444443 2 2356667644
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=6.4 Score=38.11 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=55.6
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEE---------CCCCceeccccccccccCccccccCCCCceecEEEEEEcCC
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVD---------VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 245 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~ 245 (498)
....|..+..++.|..++.++.+|.+.++= ++.|+.............+-.. ...-.+..++|+|+
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-----s~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-----STSLTLKQAAWHPS 176 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-----CCceeeeeccccCC
Confidence 345788899999999999999999665542 1223221111111111100000 01125778899996
Q ss_pred C---CEEEEEeCCCeEEEEECCCCeee
Q 010883 246 G---RELVAGSSDDCIYVYDLEANKLS 269 (498)
Q Consensus 246 g---~~l~~g~~dg~i~vwd~~~~~~~ 269 (498)
. ..|+.-+.|+.|++||+.....+
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcchh
Confidence 5 67888889999999999765443
No 460
>PLN02193 nitrile-specifier protein
Probab=90.52 E-value=19 Score=35.63 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=73.4
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEEeec---CCCceeEEEEEeCCCCCeEEEEECCC-----eEEEEECCCC
Q 010883 142 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG 208 (498)
Q Consensus 142 dg~~la~~~~d-----g~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~s~d~-----~i~iwd~~~~ 208 (498)
++.+.+.|+.+ ..+.+||+.+.. ....... ...+..-..+. -++++.+.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE-WKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE-EEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 55667777654 357888887752 2221111 01111111112 2566677776543 4678888776
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEEEec----cCCCee
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA----HTSDVN 280 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~~~~~~----~~~~v~ 280 (498)
+........... ....+| ..+.+ +++.++.++.+ ..+.+||+.+.+....-.. ......
T Consensus 305 ~W~~~~~~~~~~-------~~R~~~----~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 305 KWFHCSTPGDSF-------SIRGGA----GLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred EEEeCCCCCCCC-------CCCCCc----EEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 654332211000 000111 11222 56777777655 4589999988775432111 111112
Q ss_pred EEEEeCCCCCEEEEeeCC--------------CeEEEEcCc
Q 010883 281 TVCFGDESGHLIYSGSDD--------------NLCKVWDRR 307 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~d--------------g~i~vwd~~ 307 (498)
+++. .++++++.|+.+ ..+.+||+.
T Consensus 372 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 372 ASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 2222 356777787753 246777775
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.52 E-value=1.7 Score=25.87 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=28.1
Q ss_pred CCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEE
Q 010883 415 TGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSW 455 (498)
Q Consensus 415 ~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 455 (498)
|++++|+++.. ++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 46777777654 789999999999888887653 33334444
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.51 E-value=2 Score=35.76 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=25.7
Q ss_pred ccEEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 010883 324 EGITFIDSRGDG------RYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 324 ~~v~~l~~~~~~------~~l~s~~~dg~i~iwd~~~ 354 (498)
..+..++|||.| -+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 4688899999999998764
No 463
>PLN02153 epithiospecifier protein
Probab=90.50 E-value=16 Score=34.48 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=56.0
Q ss_pred CCCEEEEEECC-------CeEEEEECCCCeEEEEEeecC-CCc---eeEEEEEeCCCCCeEEEEECC-----CeEEEEEC
Q 010883 142 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILAK-SLR---WTVTDTSLSPDQRHLVYASMS-----PIVHIVDV 205 (498)
Q Consensus 142 dg~~la~~~~d-------g~i~vw~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~ 205 (498)
++++++.|+.+ ..+.+||+.+.. ........ ... .....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT-WSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCE-EEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45677777653 357888887752 22111110 000 01222222 56677777653 35788888
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeee
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------DCIYVYDLEANKLS 269 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----------g~i~vwd~~~~~~~ 269 (498)
.+.+......+.... .+.....| +++. -++++++.|+.+ ..|.+||..+.+..
T Consensus 109 ~t~~W~~~~~~~~~~-----~p~~R~~~-----~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 109 VKNEWTFLTKLDEEG-----GPEARTFH-----SMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCCEEEEeccCCCCC-----CCCCceee-----EEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 877654433221100 00000011 2222 356667777653 25788998877653
No 464
>PRK13684 Ycf48-like protein; Provisional
Probab=90.50 E-value=15 Score=34.40 Aligned_cols=278 Identities=11% Similarity=0.071 Sum_probs=126.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEEeec-CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~-~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
...+++++|..+.+-+|+|. +|. ||.. +.|+........ ......+.++.|.++ ..+++ +..+.|.. ..+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCC
Confidence 56789999986666677664 453 3433 333333322111 112235778888654 33343 44444322 22223
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDE 287 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~ 287 (498)
+.-......... .++ .....+.. .+..++ ++..|.|..=+ ..++.-..+. .-...+.++.+. +
T Consensus 119 ~tW~~~~~~~~~----------~~~--~~~i~~~~-~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~-~ 182 (334)
T PRK13684 119 KNWTRIPLSEKL----------PGS--PYLITALG-PGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRS-P 182 (334)
T ss_pred CCCeEccCCcCC----------CCC--ceEEEEEC-CCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEEC-C
Confidence 221111110000 011 11122222 233333 34455454322 2232222221 224567888886 5
Q ss_pred CCCEEEEeeCCCeEEE-EcCccccCCCc-eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883 288 SGHLIYSGSDDNLCKV-WDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 365 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~v-wd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 365 (498)
++.+++++ ..|.+.. +|- .+. -......-...++.+.+.++++.++++ ..|.+++=......
T Consensus 183 ~g~~v~~g-~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~--------- 246 (334)
T PRK13684 183 DGKYVAVS-SRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE--------- 246 (334)
T ss_pred CCeEEEEe-CCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC---------
Confidence 66555544 4565543 221 111 111222334678899999998877665 45665432111110
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec-
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK- 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~- 444 (498)
.-....... .......+...+.+++..++ ++.+|.|. .....++.-....
T Consensus 247 -------------------------sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 247 -------------------------SWSKPIIPE--ITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred -------------------------ccccccCCc--cccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCc
Confidence 000000000 00000012223445666554 44567554 3444555433332
Q ss_pred --cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 445 --YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 445 --~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
.-....+.+.|..+++.++ .+..|.|..|+-
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 298 GEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 1223577888877766655 556888888764
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.42 E-value=7.1 Score=30.46 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=68.6
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----EeecCCCceeEEEEE---eCC--CCCeEEEEECCCeEEEEEC
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----DILAKSLRWTVTDTS---LSP--DQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~----~~~~~~~~~~v~~~~---~sp--~~~~l~~~s~d~~i~iwd~ 205 (498)
..-.|.....-|++++..|+|.|++......... ....-.....|++++ |.| +...|+.|+ ...+..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 4456777777899999999999998764321110 000111222577765 433 234566665 557999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSSDDCIYVYDLEANKLSLR 271 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~----~g~~l~~g~~dg~i~vwd~~~~~~~~~ 271 (498)
....-.....++. .|.++.+-. +.. ++..+.+-.|.-||.+..+...+
T Consensus 81 ~~N~d~Fyke~~D-----------------Gvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFYKEVPD-----------------GVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhhhhCcc-----------------ceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence 8876544444332 566666532 233 44444456677777766555433
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.98 E-value=0.038 Score=51.99 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=92.6
Q ss_pred EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCe
Q 010883 179 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDC 257 (498)
Q Consensus 179 v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg~ 257 (498)
.....|-|.+.-++.++.+..+..||-........ . .++....++|..++..++ .+-..+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~-n-----------------~tg~aldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL-N-----------------PTGKALDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceeccc-C-----------------CchhHhhhhhccccchhhhhhhcCCC
Confidence 44567888887788888888899998654332211 1 122566788888877554 4456788
Q ss_pred EEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883 258 IYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 336 (498)
Q Consensus 258 i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 336 (498)
+++||+.+.... .+. +....-.-+.|+ +....++.+...|.+.+++.. ....+...-.|...++++++.+.+.
T Consensus 99 iylwd~n~eytq-qLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 99 IYLWDVNSEYTQ-QLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred eeechhhhhhHH-HHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEecccce
Confidence 999999875432 121 111111226786 667778888899999999976 4444444444889999999998765
Q ss_pred EEEEEeCC
Q 010883 337 YLISNGKD 344 (498)
Q Consensus 337 ~l~s~~~d 344 (498)
.+ .++.|
T Consensus 173 vi-l~dcd 179 (615)
T KOG2247|consen 173 VI-LCDCD 179 (615)
T ss_pred ee-ecCcH
Confidence 44 34444
No 467
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=89.78 E-value=35 Score=37.41 Aligned_cols=301 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred cCCCCceEEEEEcC--CCCEEE-----EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC--eEEEEECCC
Q 010883 128 DQTTSRAYVSQFSA--DGSLFV-----AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSP 198 (498)
Q Consensus 128 ~~h~~~v~~~~~s~--dg~~la-----~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~s~d~ 198 (498)
.+|...|-|....- ++..|+ +.+.||.+.|=|.+ ..+.+...+.-..|..+....-.. +||..--||
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN----yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN----YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch----heeeecCCCceEEEEEecCCCccceeEEEecCcCc
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 278 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (498)
++.|=|..+.+...+....... +.+++=++++..-...=.|-.-|.--....+.-..
T Consensus 420 tlyvSdp~s~qv~rv~sl~~~d-----------------------~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~ 476 (1899)
T KOG4659|consen 420 TLYVSDPLSKQVWRVSSLEPQD-----------------------SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIF 476 (1899)
T ss_pred eEEecCCCcceEEEeccCCccc-----------------------cccCeeEEeccCcCccccccccCcchhcccceecc
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--------------------ccccEEEEEEcC-----
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--------------------HLEGITFIDSRG----- 333 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------------------~~~~v~~l~~~~----- 333 (498)
...|+|. .++.+.++-+. .|++.| ....+.++.+ |....+.++++|
T Consensus 477 PkGIa~d-k~g~lYfaD~t--~IR~iD------~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl 547 (1899)
T KOG4659|consen 477 PKGIAFD-KMGNLYFADGT--RIRVID------TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL 547 (1899)
T ss_pred CCceeEc-cCCcEEEeccc--EEEEec------cCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE
Q ss_pred ---CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 334 ---DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 334 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
|.+.++--..++.|+|--=+-..+.............+.+.+... +.+.......+..-+.......-++
T Consensus 548 ~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~---r~Iavg~~G~lyvaEsD~rriNrvr---- 620 (1899)
T KOG4659|consen 548 LVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQ---RDIAVGTDGALYVAESDGRRINRVR---- 620 (1899)
T ss_pred EEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhh---hceeecCCceEEEEeccchhhhheE----
Q ss_pred cccCCCCcEEEEEec----CCeEEE-EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEE
Q 010883 411 PVYSTGQKYIYTGSH----DSCVYV-YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 472 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~----dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~ 472 (498)
..+.||.+-+.++. +..+.. .|.-+++-...-.+|-..+.+++.+|||..+++-..+-.|+
T Consensus 621 -~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 621 -KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred -EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.48 E-value=32 Score=36.58 Aligned_cols=173 Identities=11% Similarity=0.047 Sum_probs=99.6
Q ss_pred CCCCceEEEEEc---C----CCCEEEEEECCCeEEEEE------CCCC---------eEEEEEeecCCCceeEEEEEeCC
Q 010883 129 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYD------VERG---------WKIQKDILAKSLRWTVTDTSLSP 186 (498)
Q Consensus 129 ~h~~~v~~~~~s---~----dg~~la~~~~dg~i~vw~------~~~~---------~~~~~~~~~~~~~~~v~~~~~sp 186 (498)
.-..+|..++|+ . ..++|++= ....+.|+. +... ..+..+....-...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 457899999998 3 22455554 455677776 1111 11222111112233678999999
Q ss_pred -CCCeEEEEECCCeEEEEECCCCceec--cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 010883 187 -DQRHLVYASMSPIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 263 (498)
Q Consensus 187 -~~~~l~~~s~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~ 263 (498)
+.+.||+....|.-.||++....... .........+.- ..+......-..+.|.++-+.|++++.. .+.++|+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~ 231 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF 231 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence 56799999999999999993221111 111111111100 0000111345678999888888888655 5899999
Q ss_pred CCCeeeEEE--eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 264 EANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 264 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
.+......+ ......|..+.-++.+..+++.-. ...|...++.
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 987653312 234567888888755444444333 3567777776
No 469
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.35 E-value=24 Score=35.01 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=68.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-------------CCeEEEE
Q 010883 137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 203 (498)
Q Consensus 137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-------------d~~i~iw 203 (498)
+.+-++|.+++... ..+..+|+. |+.+.......+...-=..+...|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 67789999887665 678888886 4344333332210000124667899999988772 1246667
Q ss_pred ECCCCceeccccccccccCcccc-----------ccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFS-----------AADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR 271 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~ 271 (498)
| .+|+...........+..... .......-..+.++.+.+ ++.+++++-....|...|..+++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 788877766655543222210 001111223588999999 555555554455899999888888776
Q ss_pred Eecc
Q 010883 272 ILAH 275 (498)
Q Consensus 272 ~~~~ 275 (498)
+..+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6544
No 470
>PLN02153 epithiospecifier protein
Probab=89.19 E-value=20 Score=33.77 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=16.8
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeee
Q 010883 245 DGRELVAGSSD-----DCIYVYDLEANKLS 269 (498)
Q Consensus 245 ~g~~l~~g~~d-----g~i~vwd~~~~~~~ 269 (498)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 46667777653 35888998876643
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=3.8 Score=44.19 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=31.5
Q ss_pred cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.+..+|..+........|.+-+..|+|.+|++...+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCcc
Confidence 56778999999877778888899999999999876544
No 472
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.15 E-value=16 Score=32.53 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=112.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---------CCeEE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVH 201 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---------d~~i~ 201 (498)
.+.-..+..-|||..-++-+.. -|.-.|-++.+...-.+.............|.+.|++-.++.. .+.|+
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~ 181 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS 181 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence 4444567778888766654433 3444555554333322333334456788889999998888753 13455
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc---CCC
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH---TSD 278 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~ 278 (498)
+|+.-.|. ..+.|+..|||..-++.-.+..|-..|..++.. ..+..- ...
T Consensus 182 vfpaPqG~--------------------------gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~g 234 (353)
T COG4257 182 VFPAPQGG--------------------------GPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAG 234 (353)
T ss_pred eeccCCCC--------------------------CCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccc
Confidence 55543221 466788899998777766666777777766632 222211 112
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
-. -.|+++.+..-++-...+.+..+|.... .-....+.+....-.++.+...++.-.+--..+.|.-+|.++
T Consensus 235 sR-riwsdpig~~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 235 SR-RIWSDPIGRAWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred cc-ccccCccCcEEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 22 2355677888888778888888887511 112223334444455666666666555555556677777665
No 473
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.14 E-value=0.25 Score=50.25 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeE-----------EcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS-----------WHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-----------~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+.-++..+-.++.|++....+... ..+.+|...+++++ .||||+.+|+++.||.+++|.+.-.+.
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence 557788888888888877655433 44556877666654 589999999999999999998764443
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.94 E-value=16 Score=35.69 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec----CCCceeEEEEEeCCCC------CeEEEEE---------
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQ------RHLVYAS--------- 195 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~------~~l~~~s--------- 195 (498)
+.++|.|||++|++--..|.|++++..++......... .........|+++|+- .+|....
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Q ss_pred -CCCeEEEEECCCC--------ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 196 -MSPIVHIVDVGSG--------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 196 -~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
....|.-|.+... ...........| .-..|+|.|||.++++.+..+
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H---------------~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH---------------NGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCc---------------CCceEEECCCCcEEEEECCCC
No 475
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.91 E-value=14 Score=31.62 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=60.0
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC------CeEEEE---ECC--CCceec
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIV---DVG--SGTMES 212 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d------~~i~iw---d~~--~~~~~~ 212 (498)
..|..+.....|.+|++..... ...... ..-+.|..+.++..|+||++-=.+ ..+++| ... ......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~-~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC-PLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC-ceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 3444445677899999983211 111111 122479999999999999985332 256664 222 111111
Q ss_pred cccccccccCccccccC------CCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 010883 213 LANVTEIHDGLDFSAAD------DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~------~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
.........+....... ...-..++.+++..| .|+ |++|+. +.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEcC-CEEEEEEEEEE
Confidence 10000000000000000 001233677888888 555 666654 57888877543
No 476
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=88.58 E-value=30 Score=35.03 Aligned_cols=200 Identities=13% Similarity=0.115 Sum_probs=108.1
Q ss_pred ceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe---EEEEE
Q 010883 133 RAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIVD 204 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~---i~iwd 204 (498)
.+-.++.|||.+++|-+- ..-++++-|+.++..+...+ ......++|.+|++.|.....|.. =++|-
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 456778999999999653 33469999999985544322 224667899999998877665432 22332
Q ss_pred --CCC--CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEEe-ccC
Q 010883 205 --VGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRIL-AHT 276 (498)
Q Consensus 205 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~-~~~ 276 (498)
+.+ ..-..+.... . .. -..++.-+.+.++|+.... .+.+++.+.........+. .-.
T Consensus 205 h~~gt~~~~d~lvyeE~--d------------~~-f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~ 269 (682)
T COG1770 205 HRLGTPGSSDELVYEEK--D------------DR-FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRE 269 (682)
T ss_pred EecCCCCCcceEEEEcC--C------------Cc-EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcC
Confidence 332 1111111110 0 01 2333444456666666543 3468888776654332221 111
Q ss_pred -CCeeEEEEeCCCCCEEEEeeCCC-eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC---cEEEEe
Q 010883 277 -SDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWD 351 (498)
Q Consensus 277 -~~v~~~~~~~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd 351 (498)
+--..+.- ....+++-...+| ..+|..... ......-..+..|...+.--.++--..+|+....++ .|++++
T Consensus 270 ~g~eY~~eh--~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~ 346 (682)
T COG1770 270 NGVEYSVEH--GGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRD 346 (682)
T ss_pred CCcEEeeee--cCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEe
Confidence 11122221 2233444444445 566665543 223333445666877777666666667777665543 477777
Q ss_pred CCCC
Q 010883 352 IRKM 355 (498)
Q Consensus 352 ~~~~ 355 (498)
..+.
T Consensus 347 ~~~~ 350 (682)
T COG1770 347 RKTG 350 (682)
T ss_pred cCCC
Confidence 7653
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.70 E-value=13 Score=34.79 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc--cCceeE
Q 010883 325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK--GHSVLR 402 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 402 (498)
..+.|+|.|||+++++ ...|.|++++... ... ..+.... ......
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~~-------------------------------~~v~~~~~v~~~~~~ 49 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SLK-------------------------------TPVADLPEVFADGER 49 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EEC-------------------------------EEEEE-TTTBTSTTB
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cCc-------------------------------ceecccccccccccC
Confidence 4578999999987765 5599999999322 110 1111111 011123
Q ss_pred EEEEEEeccccCCCCcEEEEEecC--------CeEEEEECCCC-------cEE-EEecc---CCCCeeeeEEcCCCCeEE
Q 010883 403 TLIRCHFSPVYSTGQKYIYTGSHD--------SCVYVYDLVSG-------EQV-AALKY---HTSPVRDCSWHPSQPMLV 463 (498)
Q Consensus 403 ~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~l~~sp~~~~l~ 463 (498)
....+.+.|.|..++.+.++.+.. ..|.-|....+ +.+ ..+.. ....-..|.|.|||.+.+
T Consensus 50 gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYv 129 (331)
T PF07995_consen 50 GLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYV 129 (331)
T ss_dssp SEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEE
T ss_pred CcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEE
Confidence 456677788887666655555532 24444544333 111 12222 223456799999998777
Q ss_pred EEeCCCc
Q 010883 464 SSSWDGD 470 (498)
Q Consensus 464 s~~~Dg~ 470 (498)
+.+..+.
T Consensus 130 s~G~~~~ 136 (331)
T PF07995_consen 130 SVGDGGN 136 (331)
T ss_dssp EEB-TTT
T ss_pred EeCCCCC
Confidence 7765543
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.29 E-value=25 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=25.8
Q ss_pred CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
..|.+++..+..+.|++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34899999988899999999999999999863
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.15 E-value=26 Score=32.70 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=50.1
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeee---EEEeccCCCe--eEEEEeCCCCCEEEEeeC-----CCeEEEEcCccc
Q 010883 245 DGRELVAGSSD-----DCIYVYDLEANKLS---LRILAHTSDV--NTVCFGDESGHLIYSGSD-----DNLCKVWDRRCL 309 (498)
Q Consensus 245 ~g~~l~~g~~d-----g~i~vwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~ 309 (498)
++.+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. .++.+.+.|+. ...+..||+...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55667777654 35777888776531 2222111111 22333 24566666664 235788887622
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA----IKLWDIRK 354 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~----i~iwd~~~ 354 (498)
....+..+... ......+...++++.+.|+.++. +.+||+.+
T Consensus 150 --~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 --EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred --CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 22222222111 11111222335667777776542 44666655
No 480
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.13 E-value=28 Score=33.04 Aligned_cols=152 Identities=11% Similarity=0.155 Sum_probs=84.0
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE--EEEEe-CC---CeEE
Q 010883 186 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-SD---DCIY 259 (498)
Q Consensus 186 p~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~--l~~g~-~d---g~i~ 259 (498)
|...+++....++-+.+||+.......... .... .+ .-...+.+ .|+. |++++ .+ ..|+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-Gr~N-NV-----------Dvrygf~l--~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPV-GRPN-NV-----------DVRYGFPL--NGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-S-S-EE-EE-----------EEEEEEEE--TTEEEEEEEEEE-CCCT-EEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecC-CCcc-ee-----------eeecceec--CCceEEEEEEecCcCCCCeEE
Confidence 345677777888899999998776544321 1100 00 01222233 3432 44444 22 4689
Q ss_pred EEECC--CCeeeEEEec-------cCCCeeEEEEe--CCCCC-EEEEeeCCCeEEEEcCcccc---CCCceeEEeccccc
Q 010883 260 VYDLE--ANKLSLRILA-------HTSDVNTVCFG--DESGH-LIYSGSDDNLCKVWDRRCLN---VKGKPAGVLMGHLE 324 (498)
Q Consensus 260 vwd~~--~~~~~~~~~~-------~~~~v~~~~~~--~~~~~-~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~ 324 (498)
+|.+. ++.+ ..+.. ....+..+|+. +.++. +++....+|.+..|.+.... ...+.++.+.. ..
T Consensus 131 ~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~s 208 (381)
T PF02333_consen 131 LFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GS 208 (381)
T ss_dssp EEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS
T ss_pred EEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CC
Confidence 99775 3332 23221 12345666653 33444 66777889998888775221 12345666654 34
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 325 GITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.+..|........|+.+-.+.-|.-|+.+.
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCC
Confidence 788888988888999998887677776653
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.91 E-value=28 Score=32.84 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=15.6
Q ss_pred CCCCEEEEEECC-----------CeEEEEECCCC
Q 010883 141 ADGSLFVAGFQA-----------SQIRIYDVERG 163 (498)
Q Consensus 141 ~dg~~la~~~~d-----------g~i~vw~~~~~ 163 (498)
-++++.+.|+.+ ..+..||..++
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 367777777753 24777888765
No 482
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.47 E-value=4.9 Score=23.75 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=27.0
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 244 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 244 ~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666655 4789999999998887777542 33344444
No 483
>PRK13615 lipoprotein LpqB; Provisional
Probab=86.14 E-value=40 Score=33.97 Aligned_cols=151 Identities=14% Similarity=0.070 Sum_probs=86.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC-Cceecc
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESL 213 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~-~~~~~~ 213 (498)
.+++.|++|..+|....++.+.++..... .... ... ..++.-.|.+++ .+-++-.....++..... +.....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~--~~~~--~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v 409 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD--AVLL--DTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV 409 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc--ceee--ccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe
Confidence 78899999999998877888888876632 1111 111 146667788877 555554433455544332 332111
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCC-Ce---ee----EEEeccCCCeeEE
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEA-NK---LS----LRILAHTSDVNTV 282 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~-~~---~~----~~~~~~~~~v~~~ 282 (498)
...- .-...|..+..|+||..++.-.. .+.|++--+.. +. .+ ..+......+.++
T Consensus 410 -~v~~-------------~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl 475 (557)
T PRK13615 410 -AVSW-------------TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDA 475 (557)
T ss_pred -eccc-------------cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceee
Confidence 1111 01237999999999988776543 35566643322 22 12 1122223488999
Q ss_pred EEeCCCCCEEEEee---CCCeEEEEcCc
Q 010883 283 CFGDESGHLIYSGS---DDNLCKVWDRR 307 (498)
Q Consensus 283 ~~~~~~~~~l~s~s---~dg~i~vwd~~ 307 (498)
.|. .+..+++.+. .+..+++..+.
T Consensus 476 ~W~-~~~~laVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 476 TWV-DELDVATLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEc-CCCEEEEEeccCCCCceEEEEECC
Confidence 997 6666655542 23456666654
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.93 E-value=4 Score=41.40 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.0
Q ss_pred CCCCEEEEEECCCeEEEEECCC----CeEEEEEeecC-------------------CCceeEEEEEeCC----CCCeEEE
Q 010883 141 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY 193 (498)
Q Consensus 141 ~dg~~la~~~~dg~i~vw~~~~----~~~~~~~~~~~-------------------~~~~~v~~~~~sp----~~~~l~~ 193 (498)
++...|+.+..||.+....... +.......... .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999888777664 21222111110 1123456677777 7789999
Q ss_pred EECCCeEEEEECCCCceeccc
Q 010883 194 ASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~ 214 (498)
.+.|+.+++||+.++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885443
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.66 E-value=2.6 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=20.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEEC-C--CeEEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 158 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~-d--g~i~vw 158 (498)
..........|||||+.|+-++. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34556788999999998886654 4 555555
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.47 E-value=14 Score=32.59 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=67.4
Q ss_pred EEcCCCCEEEEEEC-C--CeEEEEECCC---CeEEEEE-eecCCCceeEEEEEeCCCCCeEEEEECCC-eEEEEECCCC-
Q 010883 138 QFSADGSLFVAGFQ-A--SQIRIYDVER---GWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG- 208 (498)
Q Consensus 138 ~~s~dg~~la~~~~-d--g~i~vw~~~~---~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-~i~iwd~~~~- 208 (498)
+|-+||++|.+|+. + ..+++++... ....... ......++-.+ ...-|||+.|+.|+... +..+|.-...
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc-ceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 68899999999875 2 3588888654 1111111 11222333332 33457999999988763 3444443211
Q ss_pred -ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883 209 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 277 (498)
Q Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 277 (498)
.............. ....----+...|+|+.++.+..+ -.|||..+++.++.+..-.+
T Consensus 152 ~~~~~~~~l~~~~~~---------~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDT---------LPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred CCceeeecchhhhcc---------CccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCC
Confidence 11111000000000 000012245677999988888765 44578888877676654433
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.15 E-value=6.8 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.0
Q ss_pred cEEEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 010883 236 GIFSLKFSTDG------RELVAGSSDDCIYVYDLEA 265 (498)
Q Consensus 236 ~i~~~~~s~~g------~~l~~g~~dg~i~vwd~~~ 265 (498)
.+..++|||.| ..|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999954 3788889999999997653
No 488
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.01 E-value=4.6 Score=23.57 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=20.4
Q ss_pred eccCCCCeeeeEEcCCCCeEEEEe-CC--CcEEEe
Q 010883 443 LKYHTSPVRDCSWHPSQPMLVSSS-WD--GDVVRW 474 (498)
Q Consensus 443 ~~~h~~~v~~l~~sp~~~~l~s~~-~D--g~i~iw 474 (498)
+......-....|+|||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 333455677889999999666554 45 666665
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.99 E-value=34 Score=32.01 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=83.0
Q ss_pred eeEEEEEeCCCCCeEEEEECCCe------EEEEECCC--Cce--eccccccccc--cCccccccCCCCceecEEEEEEcC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPI------VHIVDVGS--GTM--ESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFST 244 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~------i~iwd~~~--~~~--~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~ 244 (498)
+.+..+.+.|++..+++.+.++. +...++.. +.. .......... .+..+. .-.....+|++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~-----~~~~D~Egi~~~~ 94 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFP-----KNGLDPEGIAVPP 94 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCC-----cCCCChhHeEEec
Confidence 35788888876666666677776 55555443 100 0000000000 011110 0111455788877
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeeeEEEe---------------ccCCCeeEEEEeCCCCCEEEEeeC-----C
Q 010883 245 DGRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----D 298 (498)
Q Consensus 245 ~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~s~s~-----d 298 (498)
+|.++++.-.+ ..|+.++.. ++....+. .......+|+++ ++++.|+++.. |
T Consensus 95 ~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 95 DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQD 172 (326)
T ss_pred CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCC
Confidence 88877776666 788888876 55544331 234567889998 77775655543 2
Q ss_pred C---------eEEEEcCcccc---CCCceeEEecc-----ccccEEEEEEcCCCCEEEE
Q 010883 299 N---------LCKVWDRRCLN---VKGKPAGVLMG-----HLEGITFIDSRGDGRYLIS 340 (498)
Q Consensus 299 g---------~i~vwd~~~~~---~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~s 340 (498)
+ .++++...... ........+.. ....|..+.+-+++++|+.
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 14554443111 01111222221 3456888888888886653
No 490
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.62 E-value=5.4 Score=37.82 Aligned_cols=163 Identities=13% Similarity=0.154 Sum_probs=93.5
Q ss_pred ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEE-EEEEcCCCCEEEEEeC
Q 010883 176 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSS 254 (498)
Q Consensus 176 ~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~s~~g~~l~~g~~ 254 (498)
...|..+-..|||+.|..-+. .++.++++.+...... +..+...+ +..| .|+ .+..-..|.-+++++.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg-------~~~~--~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPG-------DSRH--QVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCC-------chHH--HHHHHHHHHhCceeEEEEcC
Confidence 346788889999998877655 6788888876544322 21111100 0001 122 1222335566888889
Q ss_pred CCeEEEE-ECCCCee-----eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEE
Q 010883 255 DDCIYVY-DLEANKL-----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 328 (498)
Q Consensus 255 dg~i~vw-d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 328 (498)
||.|.-| |+..+.. ++.+.-....+..+.- ..+.+-+++-+..|++.++... ..+.+ .+..-...+.-
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st----~~~~l-L~~~~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYST----SEKLL-LFERAYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecc----cCcce-ehhhhhcCcce
Confidence 9988877 4443221 1111112233333332 2345567777888888887653 22222 22223346677
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
++++|++.++++-. .|.++++.+++..
T Consensus 363 ~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 363 VAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eeeCcccchheeec-CCceEEEEecCCC
Confidence 89999999888653 4679999888744
No 491
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.33 E-value=52 Score=33.68 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC------eEEEEEC-CC---eE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR------HLVYASM-SP---IV 200 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~------~l~~~s~-d~---~i 200 (498)
.+.|-.+.|.++++.+++...+|.|.+||...+...........+...+.--.|.++.. ++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEEC--CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC
Q 010883 201 HIVDV--GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 278 (498)
Q Consensus 201 ~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (498)
+++.+ .+.....+........ ......|.-+...|..- .++.|.+|++..-+...++ .-..-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~--------------~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI-~l~~i 272 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENF--------------GLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTI-SLPSI 272 (670)
T ss_pred EEEEeccCCcceEEeehheeccC--------------CcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEE-Eechh
Q ss_pred eeEE-----EEeCCCCCEEEEeeCCCeEEEEcC
Q 010883 279 VNTV-----CFGDESGHLIYSGSDDNLCKVWDR 306 (498)
Q Consensus 279 v~~~-----~~~~~~~~~l~s~s~dg~i~vwd~ 306 (498)
|..- .+.|+..+.++-+..+ .|++.|+
T Consensus 273 i~~~~~~~vSl~~~s~nRvLLs~~n-kIyLld~ 304 (670)
T PF10395_consen 273 IDKESDDLVSLKPPSPNRVLLSVNN-KIYLLDL 304 (670)
T ss_pred hccccccceEeecCCCCeEEEEcCC-EEEEEee
No 492
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.80 E-value=46 Score=32.63 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=53.3
Q ss_pred ecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883 235 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 314 (498)
Q Consensus 235 ~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 314 (498)
..|..+..++.|..++..+.+|.+.++=.+....-..+......|+|=.+. -+.+ |++.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~-i~~~-~ftss~----------------- 164 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP-VAER-FFTSST----------------- 164 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec-ccce-eeccCC-----------------
Confidence 378889999999999999999855444322221222233333345555542 2222 222211
Q ss_pred eeEEeccccccEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCCC
Q 010883 315 PAGVLMGHLEGITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
.-.+...+|+|+. .+|..-+.|..|++||+.....
T Consensus 165 --------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 165 --------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred --------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 0123345566654 4566667777888888776443
No 493
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.72 E-value=32 Score=30.70 Aligned_cols=202 Identities=13% Similarity=0.048 Sum_probs=118.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
.+.-+.++-+|||..-.++...+.|--.|-.+|+...-.+... .....|..-|||..-++-+.. -|.-.|-++.+.
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---a~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---ASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC---CCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 4556788999999998888888888888888885444333222 245667788888766654333 444455555444
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG 289 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 289 (498)
....- +..+ -........|.+.|++-+++.. |.---.|-.++. +..+. ........|+.. +++
T Consensus 137 t~f~l-p~~~------------a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~-i~vfpaPqG~gpyGi~at-pdG 200 (353)
T COG4257 137 TRFPL-PLEH------------ADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNV-ISVFPAPQGGGPYGICAT-PDG 200 (353)
T ss_pred EEeec-cccc------------CCCcccceeeCCCccEEEeecc-ccceecCcccCc-eeeeccCCCCCCcceEEC-CCC
Confidence 32221 1111 1125677889999987777642 211111222211 12222 122345667776 788
Q ss_pred CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
..-++.-.+..|-..|.... ..+.+..-......-..+..+|.++.-++-...+.+..+|...
T Consensus 201 svwyaslagnaiaridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cEEEEeccccceEEcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 88888777788888776522 1111111122233445666678888888877777888887655
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.46 E-value=35 Score=30.99 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=67.2
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE------CCCeEEEEECCCCceeccccccccccCcccc
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS 226 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (498)
..|.+||..+. .... ...+..+.|+++.|..+.++++.|. ....+..||..+...........
T Consensus 16 ~~lC~yd~~~~-qW~~--~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s-------- 84 (281)
T PF12768_consen 16 PGLCLYDTDNS-QWSS--PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS-------- 84 (281)
T ss_pred CEEEEEECCCC-Eeec--CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence 46999998875 2222 3344778999999997777777664 34578899998876543332110
Q ss_pred ccCCCCceecEEEEEEcC-CCC-EEEEEe-CCC--eEEEEECCCCeeeEE-EeccCCCeeEEEEe
Q 010883 227 AADDGGYSFGIFSLKFST-DGR-ELVAGS-SDD--CIYVYDLEANKLSLR-ILAHTSDVNTVCFG 285 (498)
Q Consensus 227 ~~~~~~h~~~i~~~~~s~-~g~-~l~~g~-~dg--~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~ 285 (498)
..-.++|..+.+.. |+. ..++|. .+| .|..||=.+...+.. .......|..+.+-
T Consensus 85 ----~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 ----NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred ----ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 01123677777743 343 444443 233 466666544443333 22234456666554
No 495
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.14 E-value=7 Score=39.67 Aligned_cols=87 Identities=23% Similarity=0.185 Sum_probs=45.4
Q ss_pred CCCCeEEEEECCCeEEEEECCC----Cceecccccccc-----ccCc-cccccCCCCceecEEEEEEcC----CCCEEEE
Q 010883 186 PDQRHLVYASMSPIVHIVDVGS----GTMESLANVTEI-----HDGL-DFSAADDGGYSFGIFSLKFST----DGRELVA 251 (498)
Q Consensus 186 p~~~~l~~~s~d~~i~iwd~~~----~~~~~~~~~~~~-----~~~~-~~~~~~~~~h~~~i~~~~~s~----~g~~l~~ 251 (498)
++...++.+..||.+....... +........... ..++ .........-...+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4777888888999888877654 111111110000 0000 000000111123455566655 6779999
Q ss_pred EeCCCeEEEEECCCCeeeEEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRI 272 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~ 272 (498)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986554
No 496
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.69 E-value=47 Score=31.97 Aligned_cols=251 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 212 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~ 212 (498)
+..++.|. ++...+.+..| +.+...+.|+.................+....++...+++ ..|.|..-+-.......
T Consensus 138 ~l~~v~f~--~~~g~~vG~~G-~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg-~~G~v~~S~D~G~tW~~ 213 (398)
T PLN00033 138 RFNSISFK--GKEGWIIGKPA-ILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVT-DEGAIYVTSNAGRNWKA 213 (398)
T ss_pred ceeeeEEE--CCEEEEEcCce-EEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEe-ccceEEEECCCCCCceE
Q ss_pred ccccccc---ccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883 213 LANVTEI---HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 289 (498)
Q Consensus 213 ~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 289 (498)
....... .............+.+....+..+++|.+++++.....++-||-........-......+..+.+. +++
T Consensus 214 ~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~-~dg 292 (398)
T PLN00033 214 AVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWR-ADG 292 (398)
T ss_pred cccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEc-CCC
Q ss_pred CEEEEeeCCCeEEEEcCccccCCCceeEEecccccc-----EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-----ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
.+++++..-+.+.--|-. .......+...... +..+.+.+++..+++|...-.++--|--.
T Consensus 293 ~l~l~g~~G~l~~S~d~G----~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~---------- 358 (398)
T PLN00033 293 GLWLLTRGGGLYVSKGTG----LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGK---------- 358 (398)
T ss_pred CEEEEeCCceEEEecCCC----CcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCc----------
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 432 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 432 (498)
++........+..-.+.+.|.++++.+++| .+|.|.-|
T Consensus 359 -----------------------------tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 359 -----------------------------SWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -----------------------------ceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.54 E-value=3.7 Score=22.76 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=21.7
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 418 KYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 418 ~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
..+++++.+|.++.+|..+|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 35788889999999999999887654
No 498
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.17 E-value=41 Score=30.92 Aligned_cols=127 Identities=19% Similarity=0.265 Sum_probs=80.9
Q ss_pred EEEEEeCCCCCeEEEE------------------ECCCeEEEEECCCCceeccccccccccCcccc-----c------cC
Q 010883 179 VTDTSLSPDQRHLVYA------------------SMSPIVHIVDVGSGTMESLANVTEIHDGLDFS-----A------AD 229 (498)
Q Consensus 179 v~~~~~sp~~~~l~~~------------------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~------~~ 229 (498)
...+.+.++|..|++. -.|+.+.-.|+++++.+.............+. . ..
T Consensus 59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~ 138 (299)
T PF14269_consen 59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS 138 (299)
T ss_pred ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence 4445567777776632 12456777788888876655544332222111 0 01
Q ss_pred CCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC-C----eeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883 230 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-D----VNTVCFGDESGHLIYSGSDDNLCKVW 304 (498)
Q Consensus 230 ~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~----v~~~~~~~~~~~~l~s~s~dg~i~vw 304 (498)
....-.-+++|...++|.+|++.-.-..|.+.|-.+++.+-.+.+... . -...+| ..+.+++-.+..++.|.++
T Consensus 139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~-QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSW-QHDARFLNESNDDGTISLF 217 (299)
T ss_pred CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEee-ccCCEEeccCCCCCEEEEE
Confidence 112234588889999999999998889999999999999888865421 1 112444 2555666566778888888
Q ss_pred cC
Q 010883 305 DR 306 (498)
Q Consensus 305 d~ 306 (498)
|-
T Consensus 218 DN 219 (299)
T PF14269_consen 218 DN 219 (299)
T ss_pred cC
Confidence 86
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.01 E-value=65 Score=33.11 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
...++++.-+|.|+-++.+..||.|++|+........ +.. ...+-..+.|...| |+++..|..+--|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-ICE---EAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hhh---hcCCccceeeeccc--eEEEeccchhheeec
Confidence 4567888889999999999999999999987542211 111 11123334454444 455555666666653
No 500
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.81 E-value=39 Score=30.45 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=73.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 313 (498)
-+..+.++. ++...+..+.-++|.|+.+......+.. ..+.-.++.. .+++.+.+..|.-+.+.|+.... ..
T Consensus 88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps-sP 161 (370)
T COG5276 88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS-SP 161 (370)
T ss_pred hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC-Cc
Confidence 456677764 4666666777799999988765443322 1233344444 48899998877777788886332 23
Q ss_pred ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 314 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 314 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
.....+......-..++.+ |++-..+..|+-+.+-|+....
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~ 202 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH 202 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC
Confidence 3334444444444566665 5677777889999999998744
Done!