Query 010883
Match_columns 498
No_of_seqs 906 out of 3374
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 3.5E-48 1.2E-52 374.7 40.6 290 124-477 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.3E-47 4.4E-52 358.0 40.7 290 126-477 27-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 6.4E-47 2.2E-51 356.8 43.1 294 123-475 47-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 1.1E-46 3.7E-51 356.9 42.7 298 123-475 56-354 (354)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.1E-46 1.4E-50 351.9 40.3 314 125-482 9-339 (345)
6 3iz6_a 40S ribosomal protein R 100.0 2.5E-47 8.4E-52 365.2 30.5 308 124-480 59-377 (380)
7 2ynn_A Coatomer subunit beta'; 100.0 1.6E-45 5.5E-50 341.5 39.1 293 123-479 5-303 (304)
8 4g56_B MGC81050 protein; prote 100.0 2.6E-46 9E-51 354.5 33.8 299 128-484 39-349 (357)
9 4gqb_B Methylosome protein 50; 100.0 1.1E-45 3.8E-50 347.4 35.9 295 128-481 27-334 (344)
10 4ery_A WD repeat-containing pr 100.0 9.2E-45 3.1E-49 338.1 41.5 292 125-477 17-311 (312)
11 3frx_A Guanine nucleotide-bind 100.0 3.1E-44 1E-48 335.2 41.5 292 125-479 11-318 (319)
12 1erj_A Transcriptional repress 100.0 5.3E-44 1.8E-48 343.7 40.4 300 129-478 62-389 (393)
13 2hes_X YDR267CP; beta-propelle 100.0 2.8E-43 9.5E-48 330.3 38.8 306 124-478 7-328 (330)
14 2xzm_R RACK1; ribosome, transl 100.0 2.3E-43 7.7E-48 333.0 38.1 293 124-479 14-341 (343)
15 1nr0_A Actin interacting prote 100.0 3.4E-42 1.2E-46 350.1 41.7 304 113-480 41-357 (611)
16 2ymu_A WD-40 repeat protein; u 100.0 7.8E-42 2.7E-46 346.1 41.3 283 123-475 295-577 (577)
17 4aow_A Guanine nucleotide-bind 100.0 2.3E-41 7.8E-46 319.0 41.4 293 126-480 33-339 (340)
18 1nr0_A Actin interacting prote 100.0 1.5E-41 5.2E-46 345.3 41.8 341 123-481 139-570 (611)
19 3zwl_B Eukaryotic translation 100.0 7.1E-41 2.4E-45 319.1 41.0 292 124-481 25-349 (369)
20 3ei3_B DNA damage-binding prot 100.0 8.1E-42 2.8E-46 327.8 33.5 310 124-478 66-382 (383)
21 4e54_B DNA damage-binding prot 100.0 1.2E-42 4.3E-47 338.9 27.6 304 125-480 113-432 (435)
22 1gxr_A ESG1, transducin-like e 100.0 9.1E-41 3.1E-45 314.3 38.9 288 126-476 46-335 (337)
23 2ymu_A WD-40 repeat protein; u 100.0 2.3E-40 8E-45 335.2 42.3 286 123-478 254-539 (577)
24 2ynn_A Coatomer subunit beta'; 100.0 1.6E-40 5.5E-45 307.9 36.3 252 172-481 9-262 (304)
25 3dm0_A Maltose-binding peripla 100.0 1.1E-40 3.6E-45 344.6 38.5 290 126-477 377-692 (694)
26 1sq9_A Antiviral protein SKI8; 100.0 8.9E-41 3E-45 322.1 33.2 288 125-479 10-396 (397)
27 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-39 4.1E-44 303.4 38.9 295 123-487 10-305 (313)
28 1k8k_C P40, ARP2/3 complex 41 100.0 2E-40 6.8E-45 316.6 33.9 297 126-479 3-362 (372)
29 1r5m_A SIR4-interacting protei 100.0 1.1E-39 3.8E-44 317.0 39.5 288 128-478 42-425 (425)
30 4a11_B DNA excision repair pro 100.0 1.9E-40 6.5E-45 320.7 33.5 321 108-483 20-370 (408)
31 3k26_A Polycomb protein EED; W 100.0 2.1E-40 7.2E-45 315.6 32.1 302 127-477 14-365 (366)
32 1vyh_C Platelet-activating fac 100.0 8.8E-40 3E-44 315.9 35.1 253 172-481 104-372 (410)
33 4gga_A P55CDC, cell division c 100.0 8.1E-39 2.8E-43 310.6 41.9 286 133-481 107-398 (420)
34 3gre_A Serine/threonine-protei 100.0 7.3E-41 2.5E-45 327.0 26.0 324 125-475 56-437 (437)
35 3i2n_A WD repeat-containing pr 100.0 4.9E-40 1.7E-44 312.0 30.8 297 126-480 13-355 (357)
36 4h5i_A Guanine nucleotide-exch 100.0 5.1E-40 1.7E-44 312.2 30.5 301 131-483 14-348 (365)
37 2pm9_A Protein WEB1, protein t 100.0 1.6E-40 5.6E-45 322.3 27.6 299 128-479 64-415 (416)
38 3ow8_A WD repeat-containing pr 100.0 4.4E-39 1.5E-43 300.2 35.7 251 171-480 27-281 (321)
39 4aez_A CDC20, WD repeat-contai 100.0 4.7E-39 1.6E-43 310.3 35.8 290 129-486 89-388 (401)
40 4ggc_A P55CDC, cell division c 100.0 6.1E-38 2.1E-42 292.6 41.5 300 117-479 7-316 (318)
41 4gqb_B Methylosome protein 50; 100.0 5.3E-39 1.8E-43 301.9 33.3 249 128-438 79-333 (344)
42 2pm9_A Protein WEB1, protein t 100.0 2.8E-40 9.6E-45 320.6 25.4 293 131-483 12-342 (416)
43 1gxr_A ESG1, transducin-like e 100.0 5.9E-39 2E-43 301.9 33.2 291 130-482 8-300 (337)
44 3dwl_C Actin-related protein 2 100.0 2.1E-40 7E-45 317.3 21.0 297 126-476 6-377 (377)
45 3vl1_A 26S proteasome regulato 100.0 3E-38 1E-42 306.8 35.6 292 122-478 89-419 (420)
46 2pm7_B Protein transport prote 100.0 4.9E-38 1.7E-42 290.2 35.1 260 126-479 4-286 (297)
47 4g56_B MGC81050 protein; prote 100.0 5.9E-39 2E-43 304.0 27.4 282 136-481 10-304 (357)
48 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-37 5.2E-42 341.9 42.0 335 124-482 608-1038(1249)
49 1got_B GT-beta; complex (GTP-b 100.0 3.2E-37 1.1E-41 290.4 38.0 248 171-480 50-303 (340)
50 3vl1_A 26S proteasome regulato 100.0 1.1E-38 3.7E-43 309.9 28.7 284 133-482 58-369 (420)
51 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-37 3.6E-42 328.7 38.3 294 124-480 6-304 (814)
52 3f3f_A Nucleoporin SEH1; struc 100.0 4.4E-38 1.5E-42 297.2 30.9 311 124-481 4-340 (351)
53 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-38 1.7E-42 330.9 34.1 203 128-357 14-245 (902)
54 3dw8_B Serine/threonine-protei 100.0 9.2E-38 3.2E-42 305.9 33.4 310 129-476 26-444 (447)
55 1pgu_A Actin interacting prote 100.0 2.9E-37 9.9E-42 314.9 38.1 334 122-480 54-574 (615)
56 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-37 9.6E-42 291.4 34.1 258 171-481 10-286 (345)
57 1p22_A F-BOX/WD-repeat protein 100.0 3.7E-37 1.3E-41 300.4 36.0 285 128-490 130-426 (435)
58 3v7d_B Cell division control p 100.0 2.3E-36 7.7E-41 297.6 41.4 285 125-482 115-425 (464)
59 1yfq_A Cell cycle arrest prote 100.0 5.2E-38 1.8E-42 296.3 28.4 292 127-476 7-322 (342)
60 2j04_B YDR362CP, TAU91; beta p 100.0 1E-38 3.6E-43 314.8 23.4 294 126-479 202-518 (524)
61 3mmy_A MRNA export factor; mRN 100.0 6.5E-37 2.2E-41 291.5 34.3 306 119-481 27-349 (368)
62 3frx_A Guanine nucleotide-bind 100.0 2.9E-36 9.8E-41 281.2 36.9 255 166-479 7-268 (319)
63 1erj_A Transcriptional repress 100.0 2.1E-36 7.3E-41 290.7 36.6 252 130-436 122-389 (393)
64 4ery_A WD repeat-containing pr 100.0 3.7E-36 1.3E-40 279.9 36.8 251 170-480 17-270 (312)
65 3bg1_A Protein SEC13 homolog; 100.0 9.2E-38 3.1E-42 290.9 24.8 259 126-478 8-293 (316)
66 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-35 3.4E-40 291.2 40.0 283 123-482 110-395 (445)
67 2pbi_B Guanine nucleotide-bind 100.0 5.9E-36 2E-40 283.2 36.9 248 172-480 60-317 (354)
68 3iz6_a 40S ribosomal protein R 100.0 1.7E-37 5.8E-42 296.9 26.5 251 171-480 61-331 (380)
69 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-35 5.4E-40 289.8 40.2 294 112-479 140-443 (445)
70 2hes_X YDR267CP; beta-propelle 100.0 3.4E-36 1.2E-40 282.1 33.5 254 172-479 10-281 (330)
71 3sfz_A APAF-1, apoptotic pepti 100.0 7.8E-37 2.7E-41 336.3 33.8 362 113-483 681-1163(1249)
72 1pgu_A Actin interacting prote 100.0 5.2E-36 1.8E-40 305.6 36.7 308 115-478 187-614 (615)
73 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-35 6.1E-40 311.4 40.0 208 129-352 56-310 (902)
74 3v7d_B Cell division control p 100.0 3.1E-35 1.1E-39 289.4 37.5 309 111-475 142-460 (464)
75 2xzm_R RACK1; ribosome, transl 100.0 7.8E-35 2.7E-39 274.6 36.8 254 170-481 15-288 (343)
76 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-35 4.2E-40 312.9 32.4 220 116-358 40-263 (814)
77 3gre_A Serine/threonine-protei 100.0 7.1E-36 2.4E-40 291.7 26.1 281 138-482 34-363 (437)
78 3jrp_A Fusion protein of prote 100.0 1.5E-34 5.1E-39 276.4 33.4 264 124-437 4-288 (379)
79 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-34 8.9E-39 281.5 34.6 311 131-479 4-392 (450)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-35 4.9E-40 286.1 25.3 294 133-480 36-344 (402)
81 2j04_B YDR362CP, TAU91; beta p 100.0 3.3E-36 1.1E-40 297.0 20.3 270 129-479 131-429 (524)
82 2xyi_A Probable histone-bindin 100.0 1.5E-34 5.2E-39 281.2 29.6 262 172-479 124-411 (430)
83 3jrp_A Fusion protein of prote 100.0 4E-34 1.4E-38 273.5 32.0 255 171-478 6-287 (379)
84 3vu4_A KMHSV2; beta-propeller 100.0 9.2E-34 3.1E-38 268.2 31.8 288 125-484 13-342 (355)
85 2j04_A TAU60, YPL007P, hypothe 100.0 7.3E-35 2.5E-39 280.1 23.8 269 129-477 13-296 (588)
86 3dm0_A Maltose-binding peripla 100.0 1.3E-33 4.5E-38 291.6 34.6 267 125-435 424-692 (694)
87 4aez_A CDC20, WD repeat-contai 100.0 4.2E-33 1.4E-37 268.7 33.4 251 130-444 133-388 (401)
88 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-33 4.6E-38 269.3 29.6 267 174-478 6-274 (372)
89 3dwl_C Actin-related protein 2 100.0 3.6E-35 1.2E-39 280.8 18.4 261 175-478 10-281 (377)
90 3jro_A Fusion protein of prote 100.0 7.9E-34 2.7E-38 294.9 29.1 264 125-480 3-287 (753)
91 1sq9_A Antiviral protein SKI8; 100.0 1.2E-33 4.2E-38 272.1 28.0 263 123-438 54-397 (397)
92 1r5m_A SIR4-interacting protei 100.0 6.8E-33 2.3E-37 269.1 33.2 300 154-480 26-363 (425)
93 3lrv_A PRE-mRNA-splicing facto 100.0 3.5E-34 1.2E-38 270.1 23.4 283 137-478 42-333 (343)
94 4aow_A Guanine nucleotide-bind 100.0 5.1E-32 1.8E-36 254.9 37.1 274 148-479 9-287 (340)
95 4gq1_A NUP37; propeller, trans 100.0 2.2E-33 7.5E-38 269.5 27.8 262 184-477 97-388 (393)
96 3k26_A Polycomb protein EED; W 100.0 2.4E-33 8.2E-38 266.7 26.6 255 129-436 67-366 (366)
97 3zwl_B Eukaryotic translation 100.0 3.5E-32 1.2E-36 258.9 34.5 271 114-439 57-349 (369)
98 3dw8_B Serine/threonine-protei 100.0 5E-33 1.7E-37 272.3 27.0 267 174-481 26-376 (447)
99 4gga_A P55CDC, cell division c 100.0 8.9E-32 3.1E-36 261.0 35.0 280 110-454 124-413 (420)
100 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-31 4.5E-36 249.0 33.9 241 171-481 13-258 (313)
101 3ei3_B DNA damage-binding prot 100.0 3.3E-32 1.1E-36 260.9 30.7 245 128-436 115-382 (383)
102 4e54_B DNA damage-binding prot 100.0 2E-32 6.7E-37 266.8 29.0 251 174-481 117-390 (435)
103 3i2n_A WD repeat-containing pr 100.0 2.1E-32 7.2E-37 259.4 28.4 250 173-482 15-295 (357)
104 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-33 4.2E-38 271.6 19.2 255 129-467 83-350 (588)
105 1yfq_A Cell cycle arrest prote 100.0 2.3E-32 7.9E-37 257.6 27.8 253 171-480 6-284 (342)
106 4h5i_A Guanine nucleotide-exch 100.0 5.4E-33 1.8E-37 263.8 23.5 250 126-436 68-343 (365)
107 3bws_A Protein LP49; two-domai 100.0 3.6E-31 1.2E-35 258.0 34.7 282 132-478 123-432 (433)
108 2w18_A PALB2, fancn, partner a 100.0 4.8E-31 1.6E-35 238.3 32.5 280 134-476 42-355 (356)
109 2pm7_B Protein transport prote 100.0 1.6E-31 5.3E-36 246.6 28.5 213 231-479 6-239 (297)
110 2xyi_A Probable histone-bindin 100.0 1.6E-31 5.4E-36 259.9 27.3 273 126-437 123-411 (430)
111 1l0q_A Surface layer protein; 100.0 1.1E-29 3.7E-34 244.1 38.7 267 144-480 3-277 (391)
112 1p22_A F-BOX/WD-repeat protein 100.0 3E-30 1E-34 251.5 33.4 238 173-480 130-367 (435)
113 4a11_B DNA excision repair pro 100.0 2.6E-30 8.9E-35 249.6 32.6 283 128-478 96-405 (408)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-30 4.5E-35 251.4 29.2 247 178-480 36-301 (402)
115 1l0q_A Surface layer protein; 100.0 4.6E-29 1.6E-33 239.7 37.9 286 126-481 27-345 (391)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-30 1.1E-34 252.5 29.5 256 178-476 6-337 (450)
117 3mmy_A MRNA export factor; mRN 100.0 8.2E-30 2.8E-34 242.4 31.7 252 171-481 34-307 (368)
118 4ggc_A P55CDC, cell division c 100.0 4.9E-29 1.7E-33 232.2 34.0 248 126-438 62-317 (318)
119 3bg1_A Protein SEC13 homolog; 100.0 9.8E-31 3.4E-35 243.4 20.3 216 125-354 51-293 (316)
120 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-29 7.5E-34 238.2 29.5 263 157-480 3-273 (355)
121 4gq1_A NUP37; propeller, trans 100.0 2.7E-30 9.2E-35 248.0 21.3 247 127-434 85-387 (393)
122 3lrv_A PRE-mRNA-splicing facto 100.0 5.8E-30 2E-34 241.3 22.2 234 182-481 42-295 (343)
123 3bws_A Protein LP49; two-domai 100.0 1.2E-28 4E-33 240.2 27.4 287 131-480 60-392 (433)
124 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-28 8.4E-33 230.2 27.3 228 125-356 51-339 (351)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.8E-28 2.3E-32 232.6 27.4 283 131-481 62-390 (415)
126 3jro_A Fusion protein of prote 100.0 1.2E-28 4.2E-33 255.9 21.9 216 124-355 46-286 (753)
127 1nir_A Nitrite reductase; hemo 100.0 6E-27 2.1E-31 232.8 31.3 278 138-482 144-462 (543)
128 2w18_A PALB2, fancn, partner a 100.0 2E-27 6.7E-32 214.8 21.3 199 131-352 111-355 (356)
129 2ecf_A Dipeptidyl peptidase IV 100.0 1.9E-26 6.6E-31 240.2 30.0 286 131-479 36-414 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-25 6.2E-30 215.6 30.4 264 126-460 112-410 (415)
131 1nir_A Nitrite reductase; hemo 99.9 1.6E-24 5.4E-29 215.4 35.3 299 134-482 181-518 (543)
132 3vgz_A Uncharacterized protein 99.9 7.3E-24 2.5E-28 200.2 35.9 281 130-469 39-335 (353)
133 3u4y_A Uncharacterized protein 99.9 7.1E-24 2.4E-28 198.5 34.6 281 137-480 3-306 (331)
134 1ri6_A Putative isomerase YBHE 99.9 5.8E-25 2E-29 206.8 27.0 277 145-478 7-308 (343)
135 1xfd_A DIP, dipeptidyl aminope 99.9 3.8E-26 1.3E-30 237.3 20.0 288 133-480 18-395 (723)
136 2ojh_A Uncharacterized protein 99.9 8.2E-25 2.8E-29 201.1 26.0 256 149-469 18-293 (297)
137 1k32_A Tricorn protease; prote 99.9 3.5E-24 1.2E-28 230.7 30.9 304 122-480 43-463 (1045)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-23 3.8E-28 218.1 29.7 293 132-480 82-437 (706)
139 1pby_B Quinohemoprotein amine 99.9 5.5E-23 1.9E-27 192.8 29.4 274 144-481 2-313 (337)
140 3o4h_A Acylamino-acid-releasin 99.9 2.5E-23 8.6E-28 210.3 27.6 276 131-478 21-315 (582)
141 1k32_A Tricorn protease; prote 99.9 7.2E-23 2.4E-27 220.6 31.7 304 130-480 294-639 (1045)
142 3hfq_A Uncharacterized protein 99.9 1.2E-22 4.3E-27 191.4 28.0 277 152-477 15-316 (347)
143 2ecf_A Dipeptidyl peptidase IV 99.9 2.3E-23 7.9E-28 216.9 24.7 293 132-478 109-459 (741)
144 1xfd_A DIP, dipeptidyl aminope 99.9 3E-23 1E-27 215.5 24.9 290 125-466 51-428 (723)
145 2z3z_A Dipeptidyl aminopeptida 99.9 3.8E-23 1.3E-27 214.1 24.8 282 134-479 28-392 (706)
146 1ri6_A Putative isomerase YBHE 99.9 6.8E-22 2.3E-26 185.8 31.2 277 129-460 35-335 (343)
147 3pe7_A Oligogalacturonate lyas 99.9 5.4E-22 1.8E-26 190.1 27.1 291 126-478 25-382 (388)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 2.6E-21 8.8E-26 187.2 29.8 213 131-355 36-279 (434)
149 2ojh_A Uncharacterized protein 99.9 1E-21 3.6E-26 180.2 25.6 206 125-355 35-259 (297)
150 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-21 4.2E-26 184.6 26.5 282 136-480 4-327 (349)
151 3vgz_A Uncharacterized protein 99.9 6.8E-21 2.3E-25 179.8 29.0 242 178-481 42-306 (353)
152 3u4y_A Uncharacterized protein 99.9 7E-21 2.4E-25 178.1 28.6 271 129-459 38-326 (331)
153 1z68_A Fibroblast activation p 99.9 1.4E-22 4.9E-27 210.2 17.6 283 136-478 20-391 (719)
154 3scy_A Hypothetical bacterial 99.9 8.2E-21 2.8E-25 180.0 27.9 280 142-478 12-337 (361)
155 3scy_A Hypothetical bacterial 99.9 2.2E-19 7.5E-24 170.1 35.5 281 130-456 48-360 (361)
156 3hfq_A Uncharacterized protein 99.9 2.6E-20 8.8E-25 175.5 28.5 267 129-440 37-323 (347)
157 1pby_B Quinohemoprotein amine 99.9 1.6E-20 5.5E-25 175.9 25.6 247 133-447 35-321 (337)
158 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.7E-20 1.3E-24 175.6 27.2 289 145-479 4-342 (365)
159 3o4h_A Acylamino-acid-releasin 99.9 3.7E-21 1.3E-25 194.5 21.3 234 176-476 21-274 (582)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-20 4.5E-25 182.2 21.3 185 153-353 23-222 (434)
161 1z68_A Fibroblast activation p 99.9 5.8E-21 2E-25 198.1 18.9 289 133-480 61-445 (719)
162 3c5m_A Oligogalacturonate lyas 99.9 2.2E-20 7.5E-25 179.2 19.9 293 132-478 36-382 (396)
163 4a5s_A Dipeptidyl peptidase 4 99.8 4.3E-19 1.5E-23 184.2 26.4 291 133-477 18-397 (740)
164 2oiz_A Aromatic amine dehydrog 99.8 1.1E-18 3.7E-23 164.7 23.9 282 142-479 14-335 (361)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-17 5.4E-22 157.4 28.8 249 132-437 40-342 (365)
166 3fvz_A Peptidyl-glycine alpha- 99.8 1.5E-17 5.1E-22 155.2 27.3 245 177-479 24-323 (329)
167 1jmx_B Amine dehydrogenase; ox 99.8 8.1E-18 2.8E-22 158.3 25.5 240 133-446 44-335 (349)
168 3azo_A Aminopeptidase; POP fam 99.8 5.2E-18 1.8E-22 174.2 25.8 299 125-479 17-370 (662)
169 2gop_A Trilobed protease; beta 99.8 5.2E-17 1.8E-21 152.8 30.5 259 132-477 15-330 (347)
170 2oiz_A Aromatic amine dehydrog 99.8 1.7E-17 5.7E-22 156.6 26.3 260 136-460 54-360 (361)
171 1q7f_A NHL, brain tumor CG1071 99.8 2E-16 6.7E-21 144.5 32.0 246 175-479 28-281 (286)
172 1q7f_A NHL, brain tumor CG1071 99.8 2.1E-16 7E-21 144.4 31.9 246 128-437 26-281 (286)
173 3azo_A Aminopeptidase; POP fam 99.8 6.3E-17 2.1E-21 166.1 30.2 280 136-477 81-410 (662)
174 2dg1_A DRP35, lactonase; beta 99.8 4.7E-17 1.6E-21 152.2 25.9 275 132-468 6-300 (333)
175 3pe7_A Oligogalacturonate lyas 99.8 4.1E-17 1.4E-21 156.0 25.0 261 157-480 14-331 (388)
176 4a5s_A Dipeptidyl peptidase 4 99.8 5.3E-17 1.8E-21 168.5 27.5 287 134-479 64-450 (740)
177 2xdw_A Prolyl endopeptidase; a 99.8 3.4E-16 1.2E-20 161.7 31.0 284 141-480 81-416 (710)
178 3fvz_A Peptidyl-glycine alpha- 99.8 1.3E-15 4.3E-20 142.0 30.9 253 130-435 22-321 (329)
179 2z2n_A Virginiamycin B lyase; 99.7 4.3E-14 1.5E-18 129.6 37.9 283 128-479 11-296 (299)
180 1qks_A Cytochrome CD1 nitrite 99.7 8.3E-15 2.8E-19 145.2 34.4 276 141-479 165-478 (567)
181 2bkl_A Prolyl endopeptidase; m 99.7 4.2E-16 1.5E-20 160.5 26.1 280 140-480 76-399 (695)
182 2xdw_A Prolyl endopeptidase; a 99.7 1.8E-15 6.1E-20 156.3 30.7 248 129-438 122-416 (710)
183 3e5z_A Putative gluconolactona 99.7 1.4E-14 4.8E-19 132.9 28.4 249 124-439 20-289 (296)
184 3c5m_A Oligogalacturonate lyas 99.7 6.4E-16 2.2E-20 148.0 19.5 261 156-480 13-331 (396)
185 2bkl_A Prolyl endopeptidase; m 99.7 1.5E-15 5.1E-20 156.5 23.2 250 129-439 118-400 (695)
186 2mad_H Methylamine dehydrogena 99.7 1E-13 3.6E-18 130.7 33.4 290 138-484 27-356 (373)
187 2qc5_A Streptogramin B lactona 99.7 7.5E-13 2.6E-17 121.3 37.0 278 130-476 18-298 (300)
188 3e5z_A Putative gluconolactona 99.7 4.4E-14 1.5E-18 129.6 27.5 235 178-478 29-286 (296)
189 2gop_A Trilobed protease; beta 99.7 1.2E-14 4.2E-19 136.5 24.2 218 178-477 16-290 (347)
190 3no2_A Uncharacterized protein 99.7 5E-14 1.7E-18 127.1 27.2 187 141-355 3-196 (276)
191 1rwi_B Serine/threonine-protei 99.7 2.4E-14 8.2E-19 129.3 24.6 240 178-480 25-266 (270)
192 3no2_A Uncharacterized protein 99.7 5E-14 1.7E-18 127.1 26.1 214 187-466 4-231 (276)
193 1qks_A Cytochrome CD1 nitrite 99.7 9.7E-13 3.3E-17 130.4 37.4 301 131-481 196-541 (567)
194 3dsm_A Uncharacterized protein 99.7 8.3E-14 2.9E-18 129.5 27.2 261 151-477 15-301 (328)
195 1yr2_A Prolyl oligopeptidase; 99.7 2.6E-14 8.9E-19 148.2 26.2 277 140-480 115-443 (741)
196 2dg1_A DRP35, lactonase; beta 99.6 4.7E-13 1.6E-17 124.9 32.0 205 126-353 39-262 (333)
197 1rwi_B Serine/threonine-protei 99.6 8.9E-14 3E-18 125.6 25.9 241 133-438 25-266 (270)
198 3sjl_D Methylamine dehydrogena 99.6 1.8E-13 6.1E-18 127.2 27.9 292 137-482 38-367 (386)
199 3c75_H MADH, methylamine dehyd 99.6 1.7E-13 5.8E-18 129.8 25.3 290 141-482 82-406 (426)
200 1yr2_A Prolyl oligopeptidase; 99.6 1.4E-13 4.9E-18 142.7 26.2 202 130-353 161-392 (741)
201 2z2n_A Virginiamycin B lyase; 99.6 1.1E-11 3.7E-16 113.5 33.6 237 177-477 15-254 (299)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 7.7E-13 2.6E-17 122.3 25.8 248 178-480 19-301 (314)
203 3sjl_D Methylamine dehydrogena 99.6 1.6E-12 5.6E-17 120.8 25.9 258 137-458 83-384 (386)
204 3dsm_A Uncharacterized protein 99.6 2.3E-12 8E-17 119.7 27.1 248 132-444 44-309 (328)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.6E-16 113.8 29.9 205 131-354 17-256 (314)
206 3iuj_A Prolyl endopeptidase; h 99.5 4.2E-12 1.4E-16 130.4 26.6 202 129-354 126-359 (693)
207 3hrp_A Uncharacterized protein 99.5 6.2E-12 2.1E-16 120.3 26.0 201 131-354 130-354 (409)
208 2mad_H Methylamine dehydrogena 99.5 1.1E-10 3.8E-15 109.9 33.6 242 136-443 70-357 (373)
209 3g4e_A Regucalcin; six bladed 99.5 1.2E-11 4.2E-16 113.2 25.9 231 178-466 14-260 (297)
210 3hrp_A Uncharacterized protein 99.5 4E-12 1.4E-16 121.6 23.5 239 178-476 132-408 (409)
211 2qc5_A Streptogramin B lactona 99.5 3.2E-10 1.1E-14 103.6 34.5 237 177-477 20-259 (300)
212 2qe8_A Uncharacterized protein 99.5 1.4E-11 4.8E-16 115.3 22.9 284 132-475 17-318 (343)
213 1xip_A Nucleoporin NUP159; bet 99.4 2E-12 6.9E-17 120.7 15.6 175 133-342 39-232 (388)
214 1xip_A Nucleoporin NUP159; bet 99.4 4.3E-12 1.5E-16 118.5 17.3 172 236-465 39-231 (388)
215 1mda_H Methylamine dehydrogena 99.4 3.9E-12 1.3E-16 118.5 17.0 270 154-482 47-350 (368)
216 3g4e_A Regucalcin; six bladed 99.4 1.8E-10 6.2E-15 105.3 27.8 198 133-354 14-229 (297)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 6.2E-10 2.1E-14 103.2 29.5 224 179-466 51-290 (326)
218 3dr2_A Exported gluconolactona 99.4 1.6E-10 5.3E-15 106.2 25.1 204 124-354 37-267 (305)
219 3dr2_A Exported gluconolactona 99.4 8.9E-11 3E-15 107.9 22.9 226 178-471 46-300 (305)
220 3iuj_A Prolyl endopeptidase; h 99.4 6.4E-11 2.2E-15 121.6 23.6 243 174-480 126-407 (693)
221 3c75_H MADH, methylamine dehyd 99.4 1.7E-10 5.6E-15 109.4 24.0 246 136-443 122-409 (426)
222 2ghs_A AGR_C_1268P; regucalcin 99.4 1.6E-09 5.6E-14 100.3 30.1 197 134-353 51-259 (326)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.6E-09 1.2E-13 100.3 32.5 268 142-481 52-340 (376)
224 1yiq_A Quinohemoprotein alcoho 99.3 3.2E-10 1.1E-14 115.7 22.5 311 143-482 70-509 (689)
225 1kb0_A Quinohemoprotein alcoho 99.3 5.6E-10 1.9E-14 113.7 24.1 310 143-482 77-511 (677)
226 2qe8_A Uncharacterized protein 99.3 9.3E-11 3.2E-15 109.6 15.8 231 178-476 18-276 (343)
227 2hz6_A Endoplasmic reticulum t 99.3 7.3E-12 2.5E-16 118.2 7.7 203 187-460 8-216 (369)
228 1kb0_A Quinohemoprotein alcoho 99.2 2.3E-09 7.8E-14 109.2 26.3 324 142-478 127-567 (677)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.5E-08 1.5E-12 92.6 33.8 262 142-475 102-375 (376)
230 1yiq_A Quinohemoprotein alcoho 99.2 1.6E-09 5.5E-14 110.5 24.8 310 142-465 120-536 (689)
231 2ece_A 462AA long hypothetical 99.2 1.4E-08 4.8E-13 95.0 27.6 236 184-466 89-399 (462)
232 2ece_A 462AA long hypothetical 99.2 4.1E-09 1.4E-13 98.6 22.4 200 138-354 88-352 (462)
233 2hz6_A Endoplasmic reticulum t 99.1 1.8E-11 6.2E-16 115.5 4.7 183 245-481 8-195 (369)
234 1mda_H Methylamine dehydrogena 99.1 1.1E-09 3.8E-14 102.0 16.1 249 136-457 69-366 (368)
235 1fwx_A Nitrous oxide reductase 99.1 1.2E-08 4E-13 99.1 22.8 284 146-479 18-432 (595)
236 3hxj_A Pyrrolo-quinoline quino 99.1 4.3E-09 1.5E-13 97.6 17.9 267 131-479 59-325 (330)
237 3hxj_A Pyrrolo-quinoline quino 99.0 1.3E-08 4.4E-13 94.4 18.9 261 134-476 22-282 (330)
238 1fwx_A Nitrous oxide reductase 99.0 7.9E-08 2.7E-12 93.3 23.1 251 141-438 99-433 (595)
239 1npe_A Nidogen, entactin; glyc 99.0 2.7E-06 9.1E-11 76.1 31.5 251 143-460 1-263 (267)
240 1kv9_A Type II quinohemoprotei 99.0 9E-08 3.1E-12 97.4 24.1 308 143-482 66-492 (668)
241 2iwa_A Glutamine cyclotransfer 99.0 3.2E-07 1.1E-11 80.7 23.7 195 133-355 22-238 (266)
242 1k3i_A Galactose oxidase precu 99.0 3E-08 1E-12 101.1 19.4 119 136-269 190-327 (656)
243 1w6s_A Methanol dehydrogenase 98.9 5.9E-07 2E-11 89.4 26.5 198 143-359 62-347 (599)
244 2ad6_A Methanol dehydrogenase 98.9 4.2E-07 1.4E-11 90.5 25.2 311 143-482 62-498 (571)
245 1kv9_A Type II quinohemoprotei 98.9 6E-07 2E-11 91.3 26.1 167 143-317 117-338 (668)
246 4a2l_A BT_4663, two-component 98.9 8E-06 2.7E-10 85.3 34.9 285 131-479 214-527 (795)
247 2iwa_A Glutamine cyclotransfer 98.9 1.8E-07 6E-12 82.3 18.6 196 237-480 23-239 (266)
248 2fp8_A Strictosidine synthase; 98.9 3E-06 1E-10 78.1 27.6 202 133-353 20-268 (322)
249 4a2l_A BT_4663, two-component 98.8 1.2E-05 4.1E-10 84.0 34.2 282 134-479 175-481 (795)
250 3qqz_A Putative uncharacterize 98.8 9.3E-06 3.2E-10 71.0 27.2 210 126-351 21-250 (255)
251 2ad6_A Methanol dehydrogenase 98.8 7.4E-06 2.5E-10 81.5 30.1 308 143-464 115-523 (571)
252 1w6s_A Methanol dehydrogenase 98.8 1.6E-05 5.3E-10 79.2 32.1 315 137-465 111-534 (599)
253 2fp8_A Strictosidine synthase; 98.8 4.9E-06 1.7E-10 76.6 26.9 253 178-480 20-315 (322)
254 3nol_A Glutamine cyclotransfer 98.8 1.3E-06 4.3E-11 75.9 21.0 181 133-343 44-244 (262)
255 3nol_A Glutamine cyclotransfer 98.8 1.2E-06 4E-11 76.1 20.5 181 237-467 45-244 (262)
256 1flg_A Protein (quinoprotein e 98.8 3E-05 1E-09 77.2 33.2 202 143-360 68-361 (582)
257 1npe_A Nidogen, entactin; glyc 98.7 1.8E-05 6.1E-10 70.6 28.0 234 189-480 2-240 (267)
258 3nok_A Glutaminyl cyclase; bet 98.7 2.6E-06 8.8E-11 74.0 21.2 179 237-466 57-253 (268)
259 2p4o_A Hypothetical protein; p 98.7 1.8E-05 6.3E-10 72.2 28.5 228 178-469 33-279 (306)
260 2p4o_A Hypothetical protein; p 98.7 2E-05 6.9E-10 71.9 28.1 197 132-353 32-241 (306)
261 3mbr_X Glutamine cyclotransfer 98.7 9.4E-06 3.2E-10 69.8 22.9 183 131-343 20-223 (243)
262 1flg_A Protein (quinoprotein e 98.7 2.2E-05 7.6E-10 78.2 29.2 172 143-319 117-362 (582)
263 3mbr_X Glutamine cyclotransfer 98.7 9.5E-06 3.2E-10 69.8 22.6 183 236-467 22-223 (243)
264 2xe4_A Oligopeptidase B; hydro 98.7 2E-06 6.9E-11 88.9 21.7 196 133-352 175-398 (751)
265 3nok_A Glutaminyl cyclase; bet 98.7 1.5E-06 5E-11 75.5 17.1 179 133-342 56-253 (268)
266 3v9f_A Two-component system se 98.6 5.5E-05 1.9E-09 78.8 31.0 292 131-479 257-569 (781)
267 3v9f_A Two-component system se 98.6 0.00038 1.3E-08 72.4 36.2 290 131-478 210-524 (781)
268 2xe4_A Oligopeptidase B; hydro 98.6 2.7E-05 9.3E-10 80.4 26.5 156 178-354 175-354 (751)
269 3v64_C Agrin; beta propeller, 98.5 0.00038 1.3E-08 64.6 31.2 197 131-354 33-234 (349)
270 1k3i_A Galactose oxidase precu 98.5 2.9E-06 1E-10 86.3 18.1 244 181-479 190-498 (656)
271 3tc9_A Hypothetical hydrolase; 98.5 5.4E-05 1.9E-09 72.5 24.8 154 178-354 138-301 (430)
272 2xzh_A Clathrin heavy chain 1; 98.5 0.00046 1.6E-08 61.3 28.0 267 152-479 48-333 (365)
273 3tc9_A Hypothetical hydrolase; 98.5 3.7E-05 1.3E-09 73.7 22.9 154 133-307 138-300 (430)
274 2xbg_A YCF48-like protein; pho 98.5 0.00092 3.2E-08 61.4 33.1 279 131-476 35-320 (327)
275 3v65_B Low-density lipoprotein 98.4 0.00057 1.9E-08 64.4 30.1 195 133-354 78-277 (386)
276 1ijq_A LDL receptor, low-densi 98.4 0.001 3.5E-08 60.7 31.8 184 145-354 3-195 (316)
277 3v64_C Agrin; beta propeller, 98.4 0.00059 2E-08 63.3 28.9 199 236-479 74-276 (349)
278 4hw6_A Hypothetical protein, I 98.4 0.00018 6E-09 68.9 25.6 155 178-354 140-304 (433)
279 3v65_B Low-density lipoprotein 98.4 0.00024 8.2E-09 67.0 26.0 227 190-479 89-319 (386)
280 3qqz_A Putative uncharacterize 98.4 0.00031 1.1E-08 61.3 24.4 204 236-475 28-250 (255)
281 1ijq_A LDL receptor, low-densi 98.3 0.0017 5.9E-08 59.2 31.0 228 190-480 3-240 (316)
282 4hw6_A Hypothetical protein, I 98.3 0.00012 4.1E-09 70.1 22.6 198 133-352 140-372 (433)
283 3p5b_L Low density lipoprotein 98.3 0.0027 9.1E-08 60.1 31.7 185 144-354 84-277 (400)
284 1bpo_A Protein (clathrin); cla 98.3 0.0017 5.8E-08 60.1 28.1 267 152-479 47-332 (494)
285 3sov_A LRP-6, low-density lipo 98.3 0.0018 6.1E-08 59.1 27.9 187 145-354 6-197 (318)
286 3kya_A Putative phosphatase; s 98.2 0.00028 9.5E-09 67.8 22.5 158 133-307 140-340 (496)
287 3p5b_L Low density lipoprotein 98.1 0.0063 2.2E-07 57.5 31.4 229 190-481 85-323 (400)
288 3kya_A Putative phosphatase; s 98.1 0.0019 6.6E-08 62.0 26.0 161 178-353 140-340 (496)
289 3s94_A LRP-6, low-density lipo 98.1 0.0099 3.4E-07 59.5 32.6 205 131-358 39-247 (619)
290 2p9w_A MAL S 1 allergenic prot 98.1 0.0012 4.1E-08 59.3 22.9 211 135-353 16-264 (334)
291 3sov_A LRP-6, low-density lipo 98.1 0.0051 1.7E-07 56.0 27.6 225 197-481 12-241 (318)
292 3m0c_C LDL receptor, low-densi 98.1 0.0059 2E-07 62.8 29.9 197 135-354 388-589 (791)
293 2p9w_A MAL S 1 allergenic prot 97.9 0.00083 2.8E-08 60.4 17.4 162 178-354 14-215 (334)
294 1n7d_A LDL receptor, low-densi 97.9 0.0001 3.5E-09 75.1 13.1 178 152-354 385-571 (699)
295 3amr_A 3-phytase; beta-propell 97.8 0.0068 2.3E-07 55.0 22.7 193 142-353 39-262 (355)
296 3ei3_A DNA damage-binding prot 97.8 0.059 2E-06 58.0 36.4 194 130-344 552-757 (1158)
297 2ism_A Putative oxidoreductase 97.8 0.017 5.8E-07 53.4 25.5 104 178-296 32-153 (352)
298 3m0c_C LDL receptor, low-densi 97.8 0.018 6.2E-07 59.2 27.8 198 236-479 425-633 (791)
299 2vpj_A Kelch-like protein 12; 97.8 0.0078 2.7E-07 54.3 22.8 188 142-354 14-231 (301)
300 2vpj_A Kelch-like protein 12; 97.7 0.0025 8.7E-08 57.6 18.7 146 187-354 14-184 (301)
301 2xn4_A Kelch-like protein 2; s 97.7 0.01 3.5E-07 53.5 22.5 188 142-354 15-229 (302)
302 2ism_A Putative oxidoreductase 97.7 0.0075 2.5E-07 55.9 21.7 207 133-353 32-296 (352)
303 4a0p_A LRP6, LRP-6, low-densit 97.7 0.054 1.8E-06 54.3 29.7 227 190-480 8-239 (628)
304 2xbg_A YCF48-like protein; pho 97.7 0.011 3.8E-07 54.1 22.2 192 132-352 122-320 (327)
305 4a0p_A LRP6, LRP-6, low-densit 97.7 0.06 2.1E-06 54.0 30.7 186 145-354 8-197 (628)
306 2xn4_A Kelch-like protein 2; s 97.6 0.0065 2.2E-07 54.9 20.0 230 188-479 16-277 (302)
307 3amr_A 3-phytase; beta-propell 97.6 0.024 8.3E-07 51.4 23.0 204 187-444 39-272 (355)
308 3ei3_A DNA damage-binding prot 97.6 0.059 2E-06 58.0 29.9 184 246-475 844-1059(1158)
309 3ii7_A Kelch-like protein 7; p 97.6 0.015 5.2E-07 52.5 22.4 144 189-354 13-178 (306)
310 3s94_A LRP-6, low-density lipo 97.6 0.026 9E-07 56.5 25.7 181 151-354 16-202 (619)
311 3ii7_A Kelch-like protein 7; p 97.6 0.022 7.6E-07 51.4 23.0 186 144-354 13-225 (306)
312 4asc_A Kelch repeat and BTB do 97.5 0.028 9.5E-07 51.0 22.4 184 145-354 7-221 (315)
313 1xi4_A Clathrin heavy chain; a 97.5 0.0062 2.1E-07 65.0 18.8 268 152-480 47-333 (1630)
314 1zgk_A Kelch-like ECH-associat 97.5 0.02 6.9E-07 51.8 20.5 190 140-354 22-240 (308)
315 3sre_A PON1, serum paraoxonase 97.4 0.016 5.3E-07 53.3 19.5 200 133-351 51-295 (355)
316 3pbp_A Nucleoporin NUP82; beta 97.4 0.0089 3E-07 55.4 17.2 161 139-304 28-208 (452)
317 2g8s_A Glucose/sorbosone dehyd 97.4 0.08 2.7E-06 48.9 28.7 56 416-471 288-347 (353)
318 4asc_A Kelch repeat and BTB do 97.3 0.029 1E-06 50.9 20.3 140 191-354 8-174 (315)
319 1n7d_A LDL receptor, low-densi 97.3 0.0011 3.8E-08 67.5 11.6 220 197-479 385-615 (699)
320 3a9g_A Putative uncharacterize 97.3 0.1 3.4E-06 48.2 26.6 211 132-354 29-296 (354)
321 2uvk_A YJHT; unknown function, 97.3 0.079 2.7E-06 48.9 22.6 146 142-306 19-224 (357)
322 1zgk_A Kelch-like ECH-associat 97.2 0.026 8.8E-07 51.1 18.5 148 185-354 22-193 (308)
323 3a9g_A Putative uncharacterize 97.2 0.13 4.6E-06 47.4 28.5 252 178-466 30-330 (354)
324 2woz_A Kelch repeat and BTB do 97.2 0.091 3.1E-06 47.6 21.8 183 145-354 18-231 (318)
325 3sre_A PON1, serum paraoxonase 97.2 0.046 1.6E-06 50.2 19.5 207 236-474 51-294 (355)
326 2xzh_A Clathrin heavy chain 1; 97.0 0.18 6E-06 45.1 28.9 197 239-481 71-293 (365)
327 2woz_A Kelch repeat and BTB do 97.0 0.092 3.2E-06 47.6 19.8 134 199-354 25-184 (318)
328 1bpo_A Protein (clathrin); cla 96.8 0.32 1.1E-05 45.3 29.1 198 238-481 69-292 (494)
329 3pbp_A Nucleoporin NUP82; beta 96.7 0.032 1.1E-06 51.8 13.7 122 133-261 67-208 (452)
330 1cru_A Protein (soluble quinop 96.7 0.48 1.6E-05 45.3 28.3 113 132-253 27-162 (454)
331 3s25_A Hypothetical 7-bladed b 96.6 0.37 1.3E-05 43.2 25.8 173 139-354 21-216 (302)
332 2uvk_A YJHT; unknown function, 96.6 0.091 3.1E-06 48.5 16.7 51 428-480 286-344 (357)
333 3s25_A Hypothetical 7-bladed b 96.6 0.31 1.1E-05 43.7 19.3 134 185-354 22-176 (302)
334 2be1_A Serine/threonine-protei 96.6 0.43 1.5E-05 43.3 20.8 117 189-321 11-139 (339)
335 3sbq_A Nitrous-oxide reductase 96.5 0.62 2.1E-05 44.8 22.7 94 146-254 73-196 (638)
336 1tl2_A L10, protein (tachylect 96.3 0.37 1.3E-05 40.4 16.5 157 178-354 42-208 (236)
337 1tl2_A L10, protein (tachylect 96.3 0.22 7.4E-06 41.8 15.0 150 133-302 42-204 (236)
338 2zwa_A Leucine carboxyl methyl 96.1 0.4 1.4E-05 48.8 19.2 199 141-355 396-636 (695)
339 2be1_A Serine/threonine-protei 96.0 0.46 1.6E-05 43.1 17.3 193 144-356 11-233 (339)
340 3das_A Putative oxidoreductase 96.0 0.36 1.2E-05 44.1 16.6 117 131-253 31-158 (347)
341 3das_A Putative oxidoreductase 96.0 0.92 3.2E-05 41.3 29.8 254 178-466 33-326 (347)
342 1cru_A Protein (soluble quinop 95.7 0.75 2.6E-05 43.9 18.4 110 178-296 28-162 (454)
343 1xi4_A Clathrin heavy chain; a 95.7 0.55 1.9E-05 50.7 18.3 219 198-481 48-292 (1630)
344 3ott_A Two-component system se 95.4 2.9 9.8E-05 43.0 34.1 194 131-354 62-260 (758)
345 3ott_A Two-component system se 95.3 3.1 0.00011 42.7 34.4 197 132-354 191-401 (758)
346 2zwa_A Leucine carboxyl methyl 94.7 1.2 4E-05 45.3 17.0 156 138-307 447-634 (695)
347 2g8s_A Glucose/sorbosone dehyd 93.0 5.3 0.00018 36.5 21.5 67 277-347 271-347 (353)
348 3qhy_B Beta-lactamase inhibito 90.3 8.5 0.00029 33.8 14.5 183 133-354 64-246 (282)
349 3sbq_A Nitrous-oxide reductase 89.7 2.3 7.7E-05 41.1 10.4 115 179-297 325-454 (638)
350 2wg3_C Hedgehog-interacting pr 87.6 5.3 0.00018 38.1 11.8 118 133-256 15-160 (463)
351 3qhy_B Beta-lactamase inhibito 86.7 16 0.00053 32.1 19.2 144 178-354 25-168 (282)
352 3uc1_A DNA gyrase subunit A; D 83.3 25 0.00087 31.5 22.2 209 133-354 43-279 (327)
353 3b7f_A Glycosyl hydrolase, BNR 82.4 30 0.001 31.8 27.8 166 131-299 54-254 (394)
354 3b7f_A Glycosyl hydrolase, BNR 82.1 31 0.0011 31.7 28.0 191 144-350 23-258 (394)
355 3q6k_A 43.2 kDa salivary prote 79.9 37 0.0013 31.2 21.8 206 131-341 86-341 (381)
356 2wg3_C Hedgehog-interacting pr 78.7 46 0.0016 31.6 28.8 115 178-298 15-159 (463)
357 1suu_A DNA gyrase subunit A; t 77.8 38 0.0013 30.1 22.9 205 141-355 6-232 (312)
358 4gq2_M Nucleoporin NUP120; bet 77.4 18 0.00062 38.1 12.0 40 131-170 235-274 (950)
359 4gq2_M Nucleoporin NUP120; bet 72.4 22 0.00075 37.5 11.0 38 236-273 237-274 (950)
360 4hvt_A Ritya.17583.B, post-pro 71.6 89 0.0031 31.6 17.4 204 133-354 130-381 (711)
361 1wp5_A Topoisomerase IV; broke 66.5 72 0.0025 28.5 24.1 155 186-354 3-174 (323)
362 3kci_A Probable E3 ubiquitin-p 64.6 86 0.003 28.7 28.3 116 236-354 106-241 (389)
363 3f7f_A Nucleoporin NUP120; nuc 62.6 71 0.0024 32.1 11.6 37 236-274 223-259 (729)
364 3f7f_A Nucleoporin NUP120; nuc 61.8 1E+02 0.0034 31.0 12.5 37 178-216 223-259 (729)
365 1suu_A DNA gyrase subunit A; t 61.5 87 0.003 27.7 25.4 159 186-354 6-181 (312)
366 3no0_A DNA gyrase subunit A; D 59.8 87 0.003 27.1 21.1 205 131-354 23-246 (276)
367 3zwu_A Alkaline phosphatase PH 59.1 42 0.0014 32.9 9.3 58 135-194 479-548 (592)
368 3uc1_A DNA gyrase subunit A; D 56.3 1.1E+02 0.0038 27.3 22.5 168 132-307 95-278 (327)
369 1zi0_A DNA gyrase subunit A; b 56.3 1.1E+02 0.0036 27.1 25.4 251 186-478 1-277 (307)
370 3l6v_A GYRA, DNA gyrase subuni 55.8 1.2E+02 0.0042 27.6 24.0 162 184-354 3-180 (370)
371 4fhn_B Nucleoporin NUP120; pro 54.0 53 0.0018 35.5 10.0 40 178-217 239-278 (1139)
372 3no0_A DNA gyrase subunit A; D 53.9 1.1E+02 0.0037 26.5 19.6 207 236-478 25-246 (276)
373 4fhn_B Nucleoporin NUP120; pro 52.2 15 0.00052 39.6 5.5 39 132-170 238-276 (1139)
374 1wp5_A Topoisomerase IV; broke 51.4 1.3E+02 0.0045 26.7 24.1 202 141-354 3-225 (323)
375 3zwu_A Alkaline phosphatase PH 51.3 42 0.0014 33.0 7.9 60 178-252 477-548 (592)
376 4a9v_A PHOX; hydrolase, beta-p 49.4 68 0.0023 31.3 8.8 62 132-195 476-549 (592)
377 1olz_A Semaphorin 4D; developm 49.1 1.2E+02 0.0042 30.2 11.0 72 131-202 396-477 (663)
378 3l6v_A GYRA, DNA gyrase subuni 48.4 1.6E+02 0.0055 26.8 24.1 212 131-354 45-316 (370)
379 4a9v_A PHOX; hydrolase, beta-p 47.2 72 0.0025 31.1 8.6 62 177-253 476-549 (592)
380 4hvt_A Ritya.17583.B, post-pro 44.0 2.7E+02 0.0091 28.1 25.9 35 177-211 129-169 (711)
381 3q6k_A 43.2 kDa salivary prote 38.0 2.4E+02 0.0081 25.8 21.3 175 257-466 124-342 (381)
382 1sqj_A OXG-RCBH, oligoxylogluc 36.3 3.7E+02 0.012 27.5 20.1 159 131-298 14-190 (789)
383 1zi0_A DNA gyrase subunit A; b 34.3 2.4E+02 0.0082 24.8 27.3 202 141-354 1-226 (307)
384 1sqj_A OXG-RCBH, oligoxylogluc 32.9 4.1E+02 0.014 27.1 17.7 155 177-344 15-190 (789)
385 3al9_A Plexin-A2; beta-propell 29.1 1.1E+02 0.0037 29.7 6.8 71 132-202 400-476 (539)
386 3a0f_A Xyloglucanase; beta-pro 27.5 5E+02 0.017 26.3 20.7 64 130-194 19-93 (763)
387 1zvt_A Topoisomerase IV subuni 27.4 2.9E+02 0.0098 23.5 13.8 106 248-355 4-115 (256)
388 4gz8_A Semaphorin-3A; multi-do 22.7 4.9E+02 0.017 25.9 10.2 85 389-473 401-495 (667)
389 3kci_A Probable E3 ubiquitin-p 22.1 4.4E+02 0.015 23.8 27.0 211 133-354 106-345 (389)
390 1t77_A Lipopolysaccharide-resp 21.9 40 0.0014 31.1 2.1 22 61-82 393-414 (414)
391 1q47_A Semaphorin 3A; beta pro 21.2 2.3E+02 0.0078 27.0 7.3 56 418-473 422-487 (495)
392 1q47_A Semaphorin 3A; beta pro 21.2 2E+02 0.0068 27.4 6.9 70 133-202 405-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-48 Score=374.74 Aligned_cols=290 Identities=22% Similarity=0.320 Sum_probs=260.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|.++|++++|+|++++||+|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 45688999999999999999999999999999999999885443 345788899999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
|+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.++.
T Consensus 178 d~~~~~~~~~~~----------------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 178 DFQGFECIRTMH----------------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp ETTSSCEEECCC----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred eCCCCceeEEEc----------------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 998876543322 5777999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC--------------------CCEEEEEeC
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--------------------GRYLISNGK 343 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~s~~~ 343 (498)
|+ +++.+|++|+.|++|++||++ .......+.+|...|.+++|+|+ +.+|++|+.
T Consensus 242 ~~-~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 242 PN-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EC-CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 97 889999999999999999998 77888899999999999999996 678999999
Q ss_pred CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883 344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 423 (498)
Q Consensus 344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 423 (498)
|+.|++||+++ +..+..+.+|..... +.+|+|++++|++|
T Consensus 317 D~~i~iwd~~~----------------------------------~~~~~~~~~h~~~v~------~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 317 DKTIKMWDVST----------------------------------GMCLMTLVGHDNWVR------GVLFHSGGKFILSC 356 (410)
T ss_dssp TSEEEEEETTT----------------------------------TEEEEEEECCSSCEE------EEEECSSSSCEEEE
T ss_pred CCeEEEEECCC----------------------------------CceEEEEECCCCcEE------EEEEcCCCCEEEEE
Confidence 99999999987 456777777764322 23567799999999
Q ss_pred ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
+.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|++|++.
T Consensus 357 s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999863
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=357.95 Aligned_cols=290 Identities=16% Similarity=0.266 Sum_probs=255.3
Q ss_pred cccCCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 126 PVDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~d----g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
.+.+|.+.|++++|+|+ +.+||+|+.|++|+||++..+.. .......+|...|.+++|+|++.++++++.|+.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 35689999999999985 67999999999999999987643 22334578888999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
+||+.+++...... .|...+.+++|+|++++|++|+.+|.|++||+.+++....+..|...|.+
T Consensus 106 lWd~~~~~~~~~~~----------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 106 LWDLENGKQIKSID----------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EEETTTTEEEEEEE----------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred EEECCCCCEEEEEe----------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 99999887654332 23336888999999999999999999999999999998899999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
++|+ +++++|++|+.||.|++||++ .++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++.
T Consensus 170 ~~~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~------- 237 (321)
T 3ow8_A 170 IAYS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH------- 237 (321)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-------
T ss_pred EEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence 9998 889999999999999999998 7888899999999999999999999999999999999999987
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
...+..+.+|.... .+++|+|++++|++++.|+.|++||+.+++++.
T Consensus 238 ---------------------------~~~~~~~~~h~~~v------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 238 ---------------------------ANLAGTLSGHASWV------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp ---------------------------CCEEEEECCCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------------------------cceeEEEcCCCCce------EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 34556677776432 233677799999999999999999999999999
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
.+.+|...|++++|+|++++|++++.||.|++||++
T Consensus 285 ~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.4e-47 Score=356.78 Aligned_cols=294 Identities=19% Similarity=0.303 Sum_probs=253.5
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
....+.+|.+.|++++|+||+++|++|+.||+|+|||+.++..+... ..|...|.+++|+|++++|++++.|+.|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34568899999999999999999999999999999999988665543 356668999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
|++.+........ . ...+|...|.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.++
T Consensus 124 w~~~~~~~~~~~~--~----------~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 124 YNLKTREGNVRVS--R----------ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp EETTTCSBSCEEE--E----------EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EECccCCCcceeE--E----------EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence 9998754211100 0 0125777999999998875 8999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
+|+ +++.+|++|+.||.|++||++ .+.....+.+|...|++++|+|++++|++++.|+.|++||++..
T Consensus 191 ~~~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------- 258 (340)
T 1got_B 191 SLA-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------- 258 (340)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred EEC-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-------
Confidence 998 788999999999999999998 77888999999999999999999999999999999999999873
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
+.+..+..+.....+ .+.+|+|++++|++|+.||.|++||+.+++.+..
T Consensus 259 ---------------------------~~~~~~~~~~~~~~v----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 259 ---------------------------QELMTYSHDNIICGI----TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp ---------------------------EEEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ---------------------------cEEEEEccCCcccce----EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence 333333322211122 2336777999999999999999999999999999
Q ss_pred eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 443 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 443 ~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
+.+|..+|++++|+|++.+|+||+.||.|++||
T Consensus 308 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-46 Score=356.86 Aligned_cols=298 Identities=18% Similarity=0.273 Sum_probs=254.0
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
....+.+|...|++++|+||+++||+|+.||+|+|||..++....... .|...|.+++|+|++++|++++.|+.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 345688999999999999999999999999999999998886655432 45558999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
|++............. ...+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.++
T Consensus 133 ~~~~~~~~~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~ 202 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKK----------SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202 (354)
T ss_dssp EECCCCTTCCSGGGCE----------EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeccccccccccce----------eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Confidence 9987543211111000 112477799999999999999999999999999999999999999999999999
Q ss_pred EEeCC-CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 283 CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 283 ~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
+|+|. ++++|++|+.||.|++||++ .+..+..+.+|...|++++|+|++.+|++++.|++|++||++..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~------ 272 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD------ 272 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC------
Confidence 99853 46899999999999999998 78888999999999999999999999999999999999999873
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
..+..+..+....... +.+|+|++++|++|+.|+.|++||+.+++.+.
T Consensus 273 ----------------------------~~~~~~~~~~~~~~~~----~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 273 ----------------------------REVAIYSKESIIFGAS----SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp ----------------------------EEEEEECCTTCCSCEE----EEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred ----------------------------cEEEEEcCCCccccee----EEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence 2333333322211222 23577799999999999999999999999999
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
.+.+|...|++++|+|++++|++|+.||+|++|+
T Consensus 321 ~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999999996
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=351.90 Aligned_cols=314 Identities=21% Similarity=0.322 Sum_probs=247.5
Q ss_pred ccccCCCC-ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 125 WPVDQTTS-RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 125 ~~l~~h~~-~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
..+.+|.. .|++++|+|+|++||+|+.|++|+||++.++..........+|...|.+++|+|++++|++++.|+.|++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 45677887 99999999999999999999999999999886555555567888999999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEEeccCCCee
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVN 280 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~~v~ 280 (498)
++..+.......+ .+|...|.+++|+|++++|++|+.|+.|++||+.++. .+..+..|...|.
T Consensus 89 ~~~~~~~~~~~~~--------------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 89 KKNQDDFECVTTL--------------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp EECCC-EEEEEEE--------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred EccCCCeEEEEEc--------------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 9887653222211 2577799999999999999999999999999998763 4556778999999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc--eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
+++|+ +++.+|++|+.|+.|++||.+ ... ....+.+|...|++++|+|++++|++++.|+.|++||.......
T Consensus 155 ~~~~~-p~~~~l~s~s~d~~i~~w~~~----~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 155 HVVWH-PSQELLASASYDDTVKLYREE----EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp EEEEC-SSSSCEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred EEEEC-CCCCEEEEEeCCCcEEEEEec----CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99998 788999999999999999987 443 45678899999999999999999999999999999997543211
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 437 (498)
....... .......+..+.+ |.. . .+..+|+|++..|++++.|+.|++|+...+
T Consensus 230 ~~~~~~~-------------------~~~~~~~~~~~~~~h~~--~----v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 230 QGVACSG-------------------SDPSWKCICTLSGFHSR--T----IYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp TCCCCC----------------------CEEEEEEEECSSCSS--C----EEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred ccceeec-------------------cCCccceeEEecCCCCC--c----EEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 1100000 0000122333433 332 1 233467779999999999999999998764
Q ss_pred c---------EEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCCC
Q 010883 438 E---------QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 438 ~---------~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
. ......+|...|++++|+|+++ +||+|+.||.|++|++......
T Consensus 285 ~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred CCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 2 1233468999999999999985 9999999999999999876543
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-47 Score=365.21 Aligned_cols=308 Identities=18% Similarity=0.284 Sum_probs=254.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++...... ..|...|.+++|+|++++|++++.|+.|++|
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI---KLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---ECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE---ecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 3568899999999999999999999999999999999998655543 4566789999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEE-----eccCC
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRI-----LAHTS 277 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~-----~~~~~ 277 (498)
++.+....... ........+|...|.++.|+|+ +..|++|+.|+.|++||+.+++.+..+ .+|..
T Consensus 136 ~~~~~~~~~~~---------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 136 NLSSQADRDGN---------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp ECCCCSSCCCS---------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred ECCCCccccCC---------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 99764321100 0001123468889999999996 457999999999999999999988777 57899
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCC
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
.|.+++|++.++++|++|+.||+|++||++. ....+..+.+|...|++++|+|++++|++++.|++|++||+++.
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-- 281 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-- 281 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTT---TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCC---CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--
Confidence 9999999877899999999999999999972 34677888999999999999999999999999999999999873
Q ss_pred ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE-EEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
..+..+..+.... .......+.+|+|+|++|++|+.||.|++||+.+
T Consensus 282 --------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 282 --------------------------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp --------------------------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred --------------------------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 2333333221100 0000123346788999999999999999999999
Q ss_pred CcEEEEe----ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 437 GEQVAAL----KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 437 ~~~~~~~----~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
++.+..+ .+|.+.|++++|+|++++|+||+.||+|++|++....
T Consensus 330 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9988777 6899999999999999999999999999999998653
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-45 Score=341.49 Aligned_cols=293 Identities=18% Similarity=0.250 Sum_probs=248.9
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
....+.+|.+.|++++|+|+|++||+|+.||.|++||+.++..+... ..|..+|.+++|+|++++|++|+.|+.|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 34568899999999999999999999999999999999998655543 456678999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 281 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~ 281 (498)
||+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+.++ .....+.+|...|.+
T Consensus 82 wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 82 FNYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EECCCCcEEEEEe----------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 9999887654332 47779999999999999999999999999999887 455677899999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
++|+|.++.+|++|+.|++|++||++ ...+...+ .+|...+..+.|+| ++.+|++++.|+.|++||+++
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---- 217 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---- 217 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence 99996688999999999999999997 44444333 45668899999986 778999999999999999987
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
...+..+.+|...... .+|+|++.+|++|+.||.|++||+.+++
T Consensus 218 ------------------------------~~~~~~~~~h~~~v~~------~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 218 ------------------------------KSCVATLEGHMSNVSF------AVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------------TEEEEEEECCSSCEEE------EEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------------CccceeeCCCCCCEEE------EEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 3667778888743322 2567799999999999999999999999
Q ss_pred EEEEeccCCCCeeeeEEcCCCC--eEEEEeCCCcEEEecCCCC
Q 010883 439 QVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 439 ~~~~~~~h~~~v~~l~~sp~~~--~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+..+..|...+.+++|+|++. ++++|+.|| +.+|++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 9999999999999999999886 577776555 778887653
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-46 Score=354.51 Aligned_cols=299 Identities=21% Similarity=0.240 Sum_probs=232.7
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEE-eecCCCceeEEEEEeCCCCCeEEEEECCCeE
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 200 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~------dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i 200 (498)
..|...|++++|||||++||+|+. |+.|++|+..++...... .....|...|++++|+|++++ ++++.||.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEE
Confidence 579999999999999999999997 778999998876432221 122356668999999999865 567889999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 280 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 280 (498)
+|||+.+++......... .+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|+
T Consensus 118 ~lWd~~~~~~~~~~~~~~------------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~ 185 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAK------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185 (357)
T ss_dssp EEC--------CCCCEEE------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEeeccccceeEEEeecc------------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 999998876544332211 25777999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--eccccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCC
Q 010883 281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 357 (498)
+++|++....++++++.||.|++||++ .+++... +..|...+++++|+|+ +.+|++|+.|+.|++||+++.
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-- 259 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-- 259 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--
T ss_pred EEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--
Confidence 999986556789999999999999998 4444433 3456778999999997 568899999999999999873
Q ss_pred ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC-cEEEEEecCCeEEEEECCC
Q 010883 358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~ 436 (498)
+.+..+.+|.... .. ++|+|++ ++|++|+.|++|+|||+.+
T Consensus 260 --------------------------------~~~~~~~~~~~~v--~~----l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 260 --------------------------------DSAQTSAVHSQNI--TG----LAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --------------------------------GGCEEECCCSSCE--EE----EEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --------------------------------cEeEEEeccceeE--EE----EEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 4455666665332 22 2556666 6899999999999999999
Q ss_pred CcEEEEeccCCCCeeeeEEcC-CCCeEEEEeCCCcEEEecCCCCCCCCC
Q 010883 437 GEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 437 ~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 484 (498)
++++..+ +|.+.|++++|+| ++.+|+|++.||+|++|++....+...
T Consensus 302 ~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 302 SEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp CEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred CcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence 9887665 7999999999998 788999999999999999987655443
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=347.42 Aligned_cols=295 Identities=20% Similarity=0.230 Sum_probs=233.8
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--------EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
..|...|.+++|+|||++|++++ |+++++||..... ..........+...|.+++|+|++ .|++++.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45778899999999999999887 6778888732100 000000111234479999999985 6789999999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
|+|||+.+++......... .+|...|.+++|+|+|++|++|+.|+.|++||+.+++++..+.+|...|
T Consensus 105 v~lWd~~~~~~~~~~~~~~------------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCK------------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEECTTSSCEEEEEEE------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEEeccCCCceeEeeccc------------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 9999999887544332211 1577899999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
.+++|++.+..+|++++.|++|++||++ .+++...+. .|...+.+++|+|+ +++|++|+.|+.|++||+++
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-- 246 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-- 246 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred EEEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--
Confidence 9999996666789999999999999998 666666654 45567999999985 57889999999999999987
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC-cEEEEEecCCeEEEEECC
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~ 435 (498)
++.+..+.+|..... +.+|+|++ ++|++|+.|++|+|||+.
T Consensus 247 --------------------------------~~~~~~~~~h~~~v~------~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 247 --------------------------------TSCVLSSAVHSQCVT------GLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp ----------------------------------CCEEEECCSSCEE------EEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred --------------------------------CcEEEEEcCCCCCEE------EEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 355667777764322 23567787 689999999999999999
Q ss_pred CCcEEEEeccCCCCeeeeEEcCCCC-eEEEEeCCCcEEEecCCCCCC
Q 010883 436 SGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 436 ~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+++++ .+.+|.+.|++++|+|+++ +|+|++.||+|++|++.....
T Consensus 289 ~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 289 LSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 88765 5678999999999999987 677999999999999987543
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.2e-45 Score=338.09 Aligned_cols=292 Identities=28% Similarity=0.467 Sum_probs=252.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..+.+|...|++++|+|+|++||+|+.||.|++|++.++..... ..+|...|.+++|+|++++|++++.|+.|++||
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 46789999999999999999999999999999999998865443 357778999999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+..|...|.+++|
T Consensus 94 ~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 94 VSSGKCLKTLK----------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp TTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCCCcEEEEEc----------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 99887644332 46668999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
+ +++.+|++++.||.|++||++ .++.+..+ ..+...+..++|+|++++|++++.|+.|++||+++.
T Consensus 158 ~-~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------- 224 (312)
T 4ery_A 158 N-RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-------- 224 (312)
T ss_dssp C-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT--------
T ss_pred c-CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--------
Confidence 8 789999999999999999998 66666555 346678999999999999999999999999999873
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
..+..+.+|..........+. .+++.+|++|+.||.|++||+.+++.+..+
T Consensus 225 --------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 225 --------------------------KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp --------------------------EEEEEECSSCCSSSCCCEEEE---CSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred --------------------------cEEEEEEecCCceEEEEEEEE---eCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence 445556555432222212222 247899999999999999999999999999
Q ss_pred ccCCCCeeeeEEcCCCCeEEEEe--CCCcEEEecCC
Q 010883 444 KYHTSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 477 (498)
Q Consensus 444 ~~h~~~v~~l~~sp~~~~l~s~~--~Dg~i~iw~~~ 477 (498)
.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999997 69999999864
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.1e-44 Score=335.20 Aligned_cols=292 Identities=18% Similarity=0.251 Sum_probs=246.1
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 125 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
..+.+|.+.|++++|+|++ ++|++|+.|++|++|++.... .-.......+|...|.+++|+|++++|++++.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 3578999999999999975 899999999999999986421 1122334567888999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
+||+.+++....+. +|...|.+++|+|++.+|++|+.|+.|++||+.. +.+..+.+|...|.+
T Consensus 91 ~wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 91 LWDVATGETYQRFV----------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQ 153 (319)
T ss_dssp EEETTTTEEEEEEE----------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEE
T ss_pred EEECCCCCeeEEEc----------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEE
Confidence 99999987644332 5777999999999999999999999999999964 566788899999999
Q ss_pred EEEeCC-----CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 282 VCFGDE-----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 282 ~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
+.|.|. ++.+|++++.|+.|++||++ .......+.+|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~- 228 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK- 228 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence 999843 35589999999999999998 77788889999999999999999999999999999999999872
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
+.+..+..+.. ..+.+|+|++.+|++++.+ .+++|++..
T Consensus 229 ---------------------------------~~~~~~~~~~~-------v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 229 ---------------------------------KAMYTLSAQDE-------VFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp ---------------------------------EEEEEEECCSC-------EEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred ---------------------------------cEEEEecCCCc-------EEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 44555554432 2334677899999988765 599999998
Q ss_pred CcEEEEec--------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 437 GEQVAALK--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 437 ~~~~~~~~--------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
+..+..+. .|...+.+++|+|+|++|++|+.||.|++|++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 88777664 34567999999999999999999999999998653
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-44 Score=343.72 Aligned_cols=300 Identities=24% Similarity=0.411 Sum_probs=243.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecC---------------CCceeEEEEEeCCCCCeEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK---------------SLRWTVTDTSLSPDQRHLVY 193 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~l~~ 193 (498)
+|.+.|+|++|+|||++||+|+ ++.++||++.++..+....... .+...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 6899999999986655432111 12224999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 273 (498)
++.|+.|++||+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~----------------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~- 203 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQ----------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL- 203 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred EcCCCeEEEEECCCCcEEEEEc----------------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-
Confidence 9999999999999877544322 57779999999999999999999999999999999887776
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-------ccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQA 346 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~s~~~dg~ 346 (498)
.+...+.+++|+|.++.+|++|+.||.|++||++ .+..+..+ .+|...|.+++|+|++++|++++.|+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 4667899999996689999999999999999997 55555555 578999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 426 (498)
|++||++......... ..........+.+|.... .+.+++|++.+|++|+.|
T Consensus 280 v~~wd~~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 280 VKLWNLQNANNKSDSK----------------------TPNSGTCEVTYIGHKDFV------LSVATTQNDEYILSGSKD 331 (393)
T ss_dssp EEEEEC-------------------------------------CEEEEEECCSSCE------EEEEECGGGCEEEEEETT
T ss_pred EEEEECCCCCCccccc----------------------CCCCCcceEEEecccCcE------EEEEECCCCCEEEEEeCC
Confidence 9999998643211100 000123445566666322 233567799999999999
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeeeeEEcC------CCCeEEEEeCCCcEEEecCCC
Q 010883 427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp------~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
+.|++||+.+++++..+.+|...|.+++|++ ++++|+||+.||+|++|++..
T Consensus 332 ~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 332 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999886 678999999999999999864
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-43 Score=330.34 Aligned_cols=306 Identities=18% Similarity=0.242 Sum_probs=228.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
...+.+|..+|++++|+|+ +||+|+.|++|++|++..+. ..........|...|.+++|+|++++|++++.|+.|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 3457899999999999998 99999999999999998753 22222223348889999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeeEEEeccCCC
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----NKLSLRILAHTSD 278 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~----~~~~~~~~~~~~~ 278 (498)
|++........ ... ......+|...|.+++|+|++++|++|+.|+.|++||+.. .+++..+.+|...
T Consensus 85 w~~~~~~~~~~-~~~--------~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 85 WAKEESADRTF-EMD--------LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp EEC-------C-CCE--------EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred EEcccCcCccc-cce--------eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 99864321000 000 0001136888999999999999999999999999999943 2456778899999
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC--ceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~ 354 (498)
|.+++|+ |++.+|++|+.|++|++||.+ .. .++..+.+|...|.+++|+|+ +.+|++++.|++|++||++.
T Consensus 156 v~~v~~~-p~~~~l~s~s~D~~i~iW~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 156 VKHVIWH-PSEALLASSSYDDTVRIWKDY----DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEEEC-SSSSEEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred eEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 9999998 788999999999999999986 33 577889999999999999998 77999999999999999875
Q ss_pred CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883 355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 433 (498)
....... . ......+.. |.. .+..+ +|++++ +|++++.||.|++||
T Consensus 231 ~~~~~~~-------~-------------------~~~~~~~~~~h~~--~v~~v----~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 231 DDEDDQQ-------E-------------------WVCEAILPDVHKR--QVYNV----AWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp ECTTSCE-------E-------------------EEEEEECCSCCSS--CEEEE----EECTTS-CEEEEETTSCEEEEE
T ss_pred CCccccc-------e-------------------eEEeeeccccccc--ceEEE----EEcCCC-EEEEEeCCCEEEEEE
Confidence 3211000 0 012222322 332 22223 445454 899999999999999
Q ss_pred CCCCc--EEEE-eccCCC-CeeeeEEcC--CCCeEEEEeCCCcEEEecCCC
Q 010883 434 LVSGE--QVAA-LKYHTS-PVRDCSWHP--SQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 434 ~~~~~--~~~~-~~~h~~-~v~~l~~sp--~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
..+++ .+.. +.+|.. .|++++|+| ++++|++++.||+|++|++..
T Consensus 278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 98874 3333 357887 899999999 688999999999999999864
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-43 Score=333.02 Aligned_cols=293 Identities=16% Similarity=0.270 Sum_probs=236.2
Q ss_pred CccccCCCCceEEEEE-----cC-CCCEEEEEECCCeEEEEECCCCeE----EEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883 124 PWPVDQTTSRAYVSQF-----SA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLVY 193 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~-----s~-dg~~la~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 193 (498)
...+.+|.+.|++++| ++ |+++||+|+.|++|++||+.++.. ........+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3467899999999999 77 999999999999999999975421 1222345678889999999999999999
Q ss_pred EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883 194 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 194 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 273 (498)
++.|++|++||+.+++....+. +|...|.+++|+|++++|++++.|+.|++||+.... .....
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~----------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~ 156 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFV----------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSA 156 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEE----------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEc----------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeee
Confidence 9999999999999887644322 577799999999999999999999999999998433 33333
Q ss_pred ---ccCCCeeEEEEeCCC---------CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883 274 ---AHTSDVNTVCFGDES---------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 274 ---~~~~~v~~~~~~~~~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 341 (498)
.|...|.+++|+|.. +.+|++++.||.|++||. .......+.+|...|.+++|+|++++|+++
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 688999999998432 279999999999999995 456777888999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883 342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 421 (498)
+.|+.|++||++... .....+.... .+ .+.+|+|++.+++
T Consensus 232 s~dg~v~iwd~~~~~---------------------------------~~~~~~~~~~---~v----~~v~~sp~~~~la 271 (343)
T 2xzm_R 232 GKDKKLLIWDILNLT---------------------------------YPQREFDAGS---TI----NQIAFNPKLQWVA 271 (343)
T ss_dssp ETTCEEEEEESSCCS---------------------------------SCSEEEECSS---CE----EEEEECSSSCEEE
T ss_pred cCCCeEEEEECCCCc---------------------------------ccceeecCCC---cE----EEEEECCCCCEEE
Confidence 999999999995422 1111221111 12 2336677888877
Q ss_pred EEecCCeEEEEECCCCcEEE--Eec-----------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 422 TGSHDSCVYVYDLVSGEQVA--ALK-----------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 422 ~g~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
++ .|+.|++||+.+++... .+. +|...|++++|+|++++|++|+.||.|++|++.++
T Consensus 272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 55 57789999998766432 443 68889999999999999999999999999998653
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-42 Score=350.07 Aligned_cols=304 Identities=17% Similarity=0.218 Sum_probs=249.7
Q ss_pred cccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883 113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 192 (498)
Q Consensus 113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 192 (498)
..+++.-.......+.+|...|++++|||||++||+|+.|++|+|||+.++..... .....|...|.+++|+|++++|+
T Consensus 41 v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~ 119 (611)
T 1nr0_A 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIA 119 (611)
T ss_dssp EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEE
T ss_pred EEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEEE
Confidence 33444434455667889999999999999999999999999999999975432221 23356778999999999999999
Q ss_pred EEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 010883 193 YASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 193 ~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~ 267 (498)
+++.+ +.|++||. ++.... ..+|...|.+++|+|++. .|++|+.|+.|++||..+++
T Consensus 120 ~~~~~~~~~~~v~~wd~--~~~~~~----------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 120 AVGEGRERFGHVFLFDT--GTSNGN----------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp EEECCSSCSEEEEETTT--CCBCBC----------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred EEECCCCceeEEEEeeC--CCCcce----------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 98865 37888874 332111 126788999999999987 69999999999999999999
Q ss_pred eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-------cccccEEEEEEcCCCCEEEE
Q 010883 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLIS 340 (498)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s 340 (498)
....+.+|...|.+++|+ |++++|++|+.|++|++||+. .+.....+. +|...|.+++|+|++++|++
T Consensus 182 ~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 182 FKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp EEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred EeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 989999999999999998 789999999999999999987 666776663 79999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcE
Q 010883 341 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKY 419 (498)
Q Consensus 341 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~ 419 (498)
++.|++|++||+++. +.+..+..+.. ......+.+ ++..
T Consensus 257 ~s~D~~v~lWd~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~------~~~~ 296 (611)
T 1nr0_A 257 ASADKTIKIWNVATL----------------------------------KVEKTIPVGTRIEDQQLGIIW------TKQA 296 (611)
T ss_dssp EETTSEEEEEETTTT----------------------------------EEEEEEECCSSGGGCEEEEEE------CSSC
T ss_pred EeCCCeEEEEeCCCC----------------------------------ceeeeecCCCCccceeEEEEE------cCCE
Confidence 999999999999873 33333332211 011112222 5778
Q ss_pred EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+++++.|+.|++||...++....+.+|...|++++|+|++++|++++.||.|++||+..+.
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999999999999999999888899999999999999999999999999999999998754
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-42 Score=346.06 Aligned_cols=283 Identities=24% Similarity=0.373 Sum_probs=247.3
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
....+.+|...|++++|+|++++|++++.|+.|++||.... .+. ....|...|.+++|+|++++|++++.|+.|++
T Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE---EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 33567889999999999999999999999999999998765 232 33567779999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
|+... +...... +|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus 371 ~~~~~-~~~~~~~----------------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 371 WNRNG-QLLQTLT----------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp EETTC-CEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred EcCCC-CEEEEec----------------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence 99643 3222111 36668999999999999999999999999996 567778888999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
+|+ +++++|++++.|+.|++||. .++.+..+.+|...|++++|+|++++|++++.|+.|++||...
T Consensus 433 ~~s-~d~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-------- 498 (577)
T 2ymu_A 433 AFS-PDDQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------- 498 (577)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEET-----TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------
T ss_pred EEC-CCCCEEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------
Confidence 998 78999999999999999997 5678888999999999999999999999999999999999643
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
+.+..+.+|..... +.+|+|++++|++++.||.|++||. +++++..
T Consensus 499 ---------------------------~~~~~~~~h~~~v~------~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 499 ---------------------------QLLQTLTGHSSSVR------GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp ---------------------------CEEEEEECCSSCEE------EEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred ---------------------------CEEEEEeCCCCCEE------EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 66777777764332 2367789999999999999999995 7889999
Q ss_pred eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 443 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 443 ~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
+.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus 545 ~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999999997
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-41 Score=318.98 Aligned_cols=293 Identities=20% Similarity=0.269 Sum_probs=241.4
Q ss_pred cccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE--EEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 126 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
.|.+|.+.|++++|+|+ +++||+|+.|++|+|||+.++.. ........+|...|.+++|+|++++|++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 57899999999999998 68999999999999999876532 1122345678889999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EEEeccCCCeeE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNT 281 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~ 281 (498)
|+........... .+...+..+.+++++.+|++++.|+.+++||+...... ....+|...+.+
T Consensus 113 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 113 WDLTTGTTTRRFV----------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp EETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred Eeecccceeeeec----------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 9998876544332 13336888999999999999999999999999776543 334578999999
Q ss_pred EEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc
Q 010883 282 VCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 360 (498)
Q Consensus 282 ~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 360 (498)
++|++.. ..++++++.|+.|++||++ ..+.+..+.+|...|++++|+|++++|++++.|+.|++||+++.
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~----- 247 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----- 247 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-----
Confidence 9997433 4578899999999999998 78888999999999999999999999999999999999999872
Q ss_pred cccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE
Q 010883 361 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 440 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 440 (498)
..+..+..+.. +..+ .|+|++. +++++.|+.|++||+.++..+
T Consensus 248 -----------------------------~~~~~~~~~~~---v~~~----~~~~~~~-~~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 248 -----------------------------KHLYTLDGGDI---INAL----CFSPNRY-WLCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp -----------------------------EEEEEEECSSC---EEEE----EECSSSS-EEEEEETTEEEEEETTTTEEE
T ss_pred -----------------------------ceeeeecCCce---EEee----ecCCCCc-eeeccCCCEEEEEECCCCeEE
Confidence 44555555442 2222 4556665 556667999999999988776
Q ss_pred EEec---------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 441 AALK---------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 441 ~~~~---------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
..+. +|...|++++|+|++++|++|+.||.|+|||+.++.
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 6653 688999999999999999999999999999998764
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-41 Score=345.27 Aligned_cols=341 Identities=16% Similarity=0.208 Sum_probs=255.5
Q ss_pred CCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
....+.+|...|++++|+|++. +|++|+.|++|++||..+++... ...+|...|.+++|+|++++|++++.|++|+
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~---~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee---eeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 3456889999999999999997 69999999999999998875443 3467888999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE----------
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---------- 271 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~---------- 271 (498)
+||+.+++......... ....+|...|.+++|+|+|++|++++.|++|++||+.+++.+..
T Consensus 216 lwd~~~g~~~~~~~~~~---------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDS---------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTTCCEEEECBCTT---------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCCcEeeeecccc---------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99998887654332100 01125888999999999999999999999999999988765433
Q ss_pred ---------------------------------EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE
Q 010883 272 ---------------------------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 318 (498)
Q Consensus 272 ---------------------------------~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 318 (498)
+.+|...|++++|+ +++++|++++.|++|++||+. .+.....
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s-pdg~~l~s~s~D~~v~~Wd~~----~~~~~~~ 361 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDIS----TGISNRV 361 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECC----CCceeee
Confidence 34788999999998 789999999999999999997 5555444
Q ss_pred e-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc---------------------------------cccC
Q 010883 319 L-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS---------------------------------CNLG 364 (498)
Q Consensus 319 ~-~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------------------~~~~ 364 (498)
+ .+|...|.+++|++++ .+++++.|+.+++|++........ ....
T Consensus 362 ~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp SSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred cccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 4 4677888888888665 577788888888888765321100 0000
Q ss_pred ---cccccccceeecCCcCcccccCCC-CceEEEEccCceeE---E---EEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883 365 ---FRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLR---T---LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 365 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~---~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 434 (498)
.......+..+.+.|++..+.... +..+..+....... . ......+.+|||||++|++++.|+.|++||+
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence 001122334556666665554432 33444443221100 0 0011344578889999999999999999999
Q ss_pred CC-CcEEEE--eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 435 VS-GEQVAA--LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 435 ~~-~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.+ ++.+.. +.+|...|++++|+||+++|++++.|++|++|++..+..
T Consensus 521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 87 555443 335999999999999999999999999999999987653
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-41 Score=319.08 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=252.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|.+.|++++|+|+|++||+|+.||.|++||+.++..+.. ...|...|.+++|+|++++|++++.|+.|++|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 356789999999999999999999999999999999998865553 35678899999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe-----------
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANK----------- 267 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~----------- 267 (498)
|+.+++...... +...|.+++|+|++++|++++.+ +.|++||+....
T Consensus 102 d~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 102 DVSNGQCVATWK-----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp ETTTCCEEEEEE-----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred ECCCCcEEEEee-----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 999887655443 22379999999999999999999 999999997653
Q ss_pred eeEEEeccCC--CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC-CceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883 268 LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 268 ~~~~~~~~~~--~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
....+..|.. .+.+++|+ +++++|++++.||.|++||++ . ...+..+..|...|.+++|+|++++|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS----NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp CSEEEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT----TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeeccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC----CCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 3344556666 99999998 788999999999999999997 5 67888888999999999999999999999999
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
+.|++||+++. ..+..+..... + ...+|+|+++++++++
T Consensus 240 ~~i~v~d~~~~----------------------------------~~~~~~~~~~~---~----~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 240 TNSFLVDVSTL----------------------------------QVLKKYETDCP---L----NTAVITPLKEFIILGG 278 (369)
T ss_dssp SEEEEEETTTC----------------------------------CEEEEEECSSC---E----EEEEECSSSSEEEEEE
T ss_pred ceEEEEECCCC----------------------------------ceeeeecCCCC---c----eeEEecCCCceEEEee
Confidence 99999999873 34444442221 1 2235677999999999
Q ss_pred cCC--------------eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 425 HDS--------------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 425 ~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.++ .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 988 899999999999999999999999999999999999999999999999987543
No 20
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.1e-42 Score=327.76 Aligned_cols=310 Identities=15% Similarity=0.198 Sum_probs=242.3
Q ss_pred CccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEE
Q 010883 124 PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH 201 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~ 201 (498)
...+.+|...|++++|+|++ ++||+|+.||.|+|||+.++..... ....+|...|.+++|+| ++++|++++.|+.|+
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 34678899999999999999 9999999999999999998754433 33346888999999999 789999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
+||+.+......... .+|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+..|...|.+
T Consensus 145 iwd~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 145 LRDFSGSVIQVFAKT--------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEETTSCEEEEEECC--------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred EEECCCCceEEEecc--------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 999986433222111 134458999999999999999999999999999 57788888899999999
Q ss_pred EEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 282 VCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 282 ~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
++|+ +++. +|++++.|+.|++||++........+..+ +|...|.+++|+| ++++|++++.|+.|++||+++.....
T Consensus 210 ~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 210 AEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 9998 5566 99999999999999998544335566655 6999999999999 99999999999999999998865432
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceE-EEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV-ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
......... ..+ ...+ ..+.... .. ...+++|++++ +|+.||.|++||+.+++
T Consensus 288 ~~~~~~~~~---------------~~~--~~~~~~~~~p~~---~~----~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 288 QIIIHPHRQ---------------FQH--LTPIKATWHPMY---DL----IVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEEECCBCC---------------CTT--SCCCCCEECSSS---SE----EEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred ccccccccc---------------ccc--ccceEEeccCCC---Cc----eEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 221100000 000 0000 0111111 01 11256678877 88899999999999999
Q ss_pred EEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 439 QVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 439 ~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.+..+.+ |...+..++|+|++++|++++ ||.|++||+.+
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9999986 457777889999999999997 99999999875
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.2e-42 Score=338.89 Aligned_cols=304 Identities=15% Similarity=0.186 Sum_probs=229.2
Q ss_pred ccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEE
Q 010883 125 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHI 202 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~i 202 (498)
.....|...|+|++|+| ++++||+|+.||.|+|||+.++... ......+|...|++++|+| ++++|++++.|++|++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34567899999999999 5689999999999999999876432 2334567889999999998 6899999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
||+.++......... .+...+.+++|+|++++|++|+.||.|++||+.. +.+..+.+|...|.++
T Consensus 192 wd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 192 QDFKGNILRVFASSD--------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHV 256 (435)
T ss_dssp EETTSCEEEEEECCS--------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEE
T ss_pred eeccCCceeEEeccC--------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEee
Confidence 999876543222111 2333678999999999999999999999999965 5566788999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
+|+|....+|++|+.|+.|++||++.... ........+|...|++++|+|++++|++++.|+.|++||+++.......
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~- 334 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRG-KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL- 334 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCS-SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE-
T ss_pred eecCCCceEEEEecCcceeeEEecccccc-cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE-
Confidence 99966667899999999999999984331 1223344679999999999999999999999999999999875432221
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-----------e-cCCeEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-----------S-HDSCVY 430 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-----------~-~dg~i~ 430 (498)
..|..........+...++|++.+++++ + .++.|+
T Consensus 335 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 335 ---------------------------------IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp ---------------------------------CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred ---------------------------------ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence 1111000000000111223333333333 2 346799
Q ss_pred EEECCCCcEEEEec-cCCCCeeee-EEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 431 VYDLVSGEQVAALK-YHTSPVRDC-SWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 431 iwd~~~~~~~~~~~-~h~~~v~~l-~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++..+.
T Consensus 382 iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 382 VFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99999999988875 688889988 6999999999876 8899999998764
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.1e-41 Score=314.29 Aligned_cols=288 Identities=17% Similarity=0.218 Sum_probs=242.3
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE--eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+|...|++++|+|++++|++++ ||.|++|++.++...... .....|...|.+++|+|++++|++++.|+.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3457999999999999999999998 999999999876432222 2223677899999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
|+.+++........ +|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++
T Consensus 125 d~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 125 DLAAPTPRIKAELT--------------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp ECCCC--EEEEEEE--------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ECCCCCcceeeecc--------------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence 99887632222211 3555899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 363 (498)
|+ +++++|++++.||.|++||++ ..+.+..+ .+...+.+++|+|++++|++++.|+.|++||++..
T Consensus 191 ~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-------- 256 (337)
T 1gxr_A 191 IS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------- 256 (337)
T ss_dssp EC-TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--------
T ss_pred EC-CCCCEEEEEecCCcEEEEECC----CCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------
Confidence 98 788999999999999999997 66666555 47788999999999999999999999999999873
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
....+..|... + ..+.|+|++++|++++.||.|++||+.+++.+...
T Consensus 257 ---------------------------~~~~~~~~~~~--v----~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 257 ---------------------------DKYQLHLHESC--V----LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp ---------------------------CEEEECCCSSC--E----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ---------------------------CeEEEcCCccc--e----eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence 22233444322 2 23356779999999999999999999999888555
Q ss_pred ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 444 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 444 ~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
.|...|.+++|+|++++|++++.||.|++|++
T Consensus 304 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 -KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 48899999999999999999999999999996
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-40 Score=335.24 Aligned_cols=286 Identities=24% Similarity=0.385 Sum_probs=249.3
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
....+.+|...|.+++|+|++++|++++.|+.|++|+.... ... ...+|...|.+++|+|++++|++++.|+.|++
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~---~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE---EEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567889999999999999999999999999999997643 333 33577889999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
||......... .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.++
T Consensus 330 w~~~~~~~~~~-----------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~ 391 (577)
T 2ymu_A 330 WNRNGQHLQTL-----------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 391 (577)
T ss_dssp EETTSCEEEEE-----------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred EeCCCCeeEEE-----------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEE
Confidence 99876543221 135568999999999999999999999999995 567778888999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
+|+ +++++|++++.|+.|++||. .++.+..+.+|...|++++|+|++++|++++.|+.|++||+..
T Consensus 392 ~~s-~dg~~l~~~~~d~~v~~~~~-----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-------- 457 (577)
T 2ymu_A 392 AFS-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-------- 457 (577)
T ss_dssp EEC-TTSSCEEEEETTSEEEEECT-----TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--------
T ss_pred EEC-CCCCEEEEEeCCCEEEEEeC-----CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--------
Confidence 998 78999999999999999996 5677888999999999999999999999999999999999754
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
+.+..+.+|..... +.+|+|++++|++++.|+.|++||. +++++..
T Consensus 458 ---------------------------~~~~~~~~~~~~v~------~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~ 503 (577)
T 2ymu_A 458 ---------------------------QLLQTLTGHSSSVR------GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 503 (577)
T ss_dssp ---------------------------CEEEEEECCSSCEE------EEEECTTSCEEEEEETTSEEEEEET-TSCEEEE
T ss_pred ---------------------------CEEEEEcCCCCCEE------EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 55666666664322 2367789999999999999999995 7889999
Q ss_pred eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 443 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 443 ~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
+.+|...|++++|+|++++|++++.||.|++||...
T Consensus 504 ~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 999999999999999999999999999999999753
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-40 Score=307.87 Aligned_cols=252 Identities=19% Similarity=0.259 Sum_probs=214.5
Q ss_pred cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~ 251 (498)
..+|...|++++|+|++++|++++.||.|++||+.++....... +|..+|.+++|+|++++|++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ----------------VTETPVRAGKFIARKNWIIV 72 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEEEGGGTEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----------------ccCCcEEEEEEeCCCCEEEE
Confidence 34677799999999999999999999999999999887644332 35558999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-ceeEEeccccccEEEEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFID 330 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~ 330 (498)
|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.||+|++||++ .. .....+.+|...|.+++
T Consensus 73 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~----~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGG----GTTEEEEEECCCCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECC----CCcchhhhhcccCCcEEEEE
Confidence 9999999999999999999999999999999998 788999999999999999997 44 45667889999999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 331 SRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 331 ~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
|+| ++.+|++|+.|+.|++||++..... .....++..... ...+
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~---------------------------------~~~~~~~~~~v~--~~~~ 192 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPN---------------------------------FTLTTGQERGVN--YVDY 192 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCS---------------------------------EEEECCCTTCEE--EEEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCcc---------------------------------ceeccCCcCcEE--EEEE
Confidence 999 6789999999999999999763311 111122221111 1222
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
. ..+++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||+|++||+.+...
T Consensus 193 ~--~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 193 Y--PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp C--CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred E--EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 2 234788999999999999999999999999999999999999999999999999999999999987653
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-40 Score=344.60 Aligned_cols=290 Identities=21% Similarity=0.291 Sum_probs=237.2
Q ss_pred cccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE--EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 126 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.++... .......+|...|.+++|+|++++|++++.|+.|+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 578999999999999975 79999999999999999763211 112234578889999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE---eccCCCe
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDV 279 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~~~~v 279 (498)
||+.++....... +|...|.+++|+|++++|++|+.|++|++||+......... .+|...|
T Consensus 457 wd~~~~~~~~~~~----------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 457 WDLAAGVSTRRFV----------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EECCCCcceeEEe----------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 9999887644332 57779999999999999999999999999998765433222 3688899
Q ss_pred eEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 280 NTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 280 ~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
.+++|+|.. ...|++++.|++|++||++ .......+.+|...|++++|+|++++|++++.|+.|++||+++.
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~--- 593 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG--- 593 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Confidence 999998433 3689999999999999998 77888899999999999999999999999999999999999873
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
+.+..+..+.. + .+.+|+|++.+|++++ ++.|+|||+.+++
T Consensus 594 -------------------------------~~~~~~~~~~~---v----~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 594 -------------------------------KKLYSLEANSV---I----HALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp -------------------------------EEEECCBCSSC---E----EEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred -------------------------------ceEEEecCCCc---E----EEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 33333333321 2 2235677888887765 5669999999999
Q ss_pred EEEEeccCC-------------------CCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 439 QVAALKYHT-------------------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 439 ~~~~~~~h~-------------------~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
.+..+..+. ..+++++|+|++++|++|+.||.|++|++.
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 887775322 137899999999999999999999999985
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.9e-41 Score=322.07 Aligned_cols=288 Identities=13% Similarity=0.117 Sum_probs=242.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------EEEEEeecCCCceeEEEEEeCCC----C---CeE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPD----Q---RHL 191 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~v~~~~~sp~----~---~~l 191 (498)
..+.+|.+.|++++|+| ++|++|+.||.|++|++.++. .+.. ...|...|++++|+|+ + ++|
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS---HFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE---EECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE---EecCCCcEEEEEEecccccCCccccEE
Confidence 45679999999999999 899999999999999999875 2333 2367779999999999 9 999
Q ss_pred EEEECCCeEEEEECCCCce-----eccccccccccCccccccCCCCc-----eecEEEEEEc----CCCCE-EEEEeCCC
Q 010883 192 VYASMSPIVHIVDVGSGTM-----ESLANVTEIHDGLDFSAADDGGY-----SFGIFSLKFS----TDGRE-LVAGSSDD 256 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~h-----~~~i~~~~~s----~~g~~-l~~g~~dg 256 (498)
++++.|+.|++|++.+++. ..... +| ...|.+++|+ |++++ |++++.||
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 148 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLD----------------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 148 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEEC----------------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred EEEcCCCCEEEEEccCCcccccccceeec----------------ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence 9999999999999987664 21111 23 4589999999 99999 99999999
Q ss_pred eEEEEECCC------CeeeE-----EEe-------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE
Q 010883 257 CIYVYDLEA------NKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 318 (498)
Q Consensus 257 ~i~vwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 318 (498)
.|++||+.+ ++.+. .+. .|...|.+++|+ +++ +|++++.||.|++||++ ....+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~ 222 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYN 222 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEE
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEE
Confidence 999999998 66655 663 488999999998 667 99999999999999998 7788888
Q ss_pred ecc---c---cccEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883 319 LMG---H---LEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389 (498)
Q Consensus 319 ~~~---~---~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
+.. | ...|.+++|+|++++|++++.| +.|++||+++.
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~---------------------------------- 268 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG---------------------------------- 268 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----------------------------------
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC----------------------------------
Confidence 888 8 9999999999999999999999 99999999873
Q ss_pred ceEEEEcc-------------CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec------cC----
Q 010883 390 QSVATYKG-------------HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------YH---- 446 (498)
Q Consensus 390 ~~~~~~~~-------------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h---- 446 (498)
+.+..+.. |.. .+ .+.+|+|++++|++++.||.|++||+.+++.+..+. +|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~--~v----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 269 ERIGSLSVPTHSSQASLGEFAHSS--WV----MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp CEEEEECBC--------CCBSBSS--CE----EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred cccceeccCcccccccccccccCC--cE----EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 33444444 332 22 233567799999999999999999999999999998 88
Q ss_pred -----------CCCeeeeEEcCCC----------CeEEEEeCCCcEEEecCCCC
Q 010883 447 -----------TSPVRDCSWHPSQ----------PMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 447 -----------~~~v~~l~~sp~~----------~~l~s~~~Dg~i~iw~~~~~ 479 (498)
..+|++++|+|++ ++|++++.||.|++|++.++
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999998765
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=303.40 Aligned_cols=295 Identities=16% Similarity=0.171 Sum_probs=245.4
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
....+.+|.+.|++++| |++++|++|+.||.|++||+.++...... ..|...|.+++|+|++++|++++.|+.|++
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV---YTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE---EECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe---ecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567899999999999 99999999999999999999887554433 345668999999999999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
|++........... ..+|...|.+++| ++++|++++.||.|++|| .++....+..|...+.++
T Consensus 86 ~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 86 VPLFATSGEDPLYT-------------LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA 148 (313)
T ss_dssp EETTCCTTSCC-CE-------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEE
T ss_pred EEeeecCCCCcccc-------------hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEE
Confidence 99876532211111 1246678999999 577999999999999999 677788888999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
+|.|++++++++++.||.|++||. ......+.. |...+.+++|+|++. +++++.|+.|++||+++
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d~------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~------- 214 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQN------DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT------- 214 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEET------TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-------
T ss_pred EEccCCCCEEEEEECCCCEEEEec------CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-------
Confidence 999779999999999999999994 355666666 899999999999988 99999999999999987
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
.+.+..+..|.... . +.+|+|++ .|++++.||.|++||+.+++.+.
T Consensus 215 ---------------------------~~~~~~~~~~~~~i--~----~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 215 ---------------------------GDVLRTYEGHESFV--Y----CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp ---------------------------CCEEEEEECCSSCE--E----EEEECTTS-CEEEEETTSEEEEECTTTCCEEE
T ss_pred ---------------------------hhhhhhhhcCCceE--E----EEEEecCC-CEEEEecCCEEEEEECCCCceeE
Confidence 35566666665332 2 23566688 58999999999999999999999
Q ss_pred EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccc
Q 010883 442 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 487 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~ 487 (498)
.+..|...|++++|+|+++ +++++.||.|++|++..+........
T Consensus 261 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 261 VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp EEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC----
T ss_pred EEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhh
Confidence 9999999999999999998 66799999999999988765544433
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-40 Score=316.64 Aligned_cols=297 Identities=15% Similarity=0.166 Sum_probs=242.0
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
.+..|..+|++++|+|+|++||+|+.|+.|++||+.+++ .........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 345689999999999999999999999999999999874 1122233467789999999999999999999999999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEE-eccCCCeeE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI-LAHTSDVNT 281 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---~~~~-~~~~~~v~~ 281 (498)
.+++........ +|...|.+++|+|++++|++++.|+.|++||+..++. ...+ ..|...|.+
T Consensus 82 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 82 KGRTWKPTLVIL--------------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp ETTEEEEEEECC--------------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred CCCeeeeeEEee--------------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 887643332211 3556899999999999999999999999999988763 2333 468999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccc--------------cCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcE
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCL--------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 347 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i 347 (498)
++|+ +++++|++++.||.|++||++.. ...+..+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 148 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 9998 78899999999999999996421 11467788888999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883 348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
++||+++ .+.+..+..|... +. +++|+|++.+|++| .|+
T Consensus 227 ~i~d~~~----------------------------------~~~~~~~~~~~~~--v~----~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 227 CLADADK----------------------------------KMAVATLASETLP--LL----AVTFITESSLVAAG-HDC 265 (372)
T ss_dssp EEEEGGG----------------------------------TTEEEEEECSSCC--EE----EEEEEETTEEEEEE-TTS
T ss_pred EEEECCC----------------------------------CceeEEEccCCCC--eE----EEEEecCCCEEEEE-eCC
Confidence 9999987 3556666666532 22 23566689988888 899
Q ss_pred eEEEEECCC--CcE--------------------------------E------EEe-ccCCCCeeeeEEc-CCC---CeE
Q 010883 428 CVYVYDLVS--GEQ--------------------------------V------AAL-KYHTSPVRDCSWH-PSQ---PML 462 (498)
Q Consensus 428 ~i~iwd~~~--~~~--------------------------------~------~~~-~~h~~~v~~l~~s-p~~---~~l 462 (498)
.|++|++.+ ++. . ..+ .+|..+|++++|+ +++ .+|
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l 345 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 345 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence 999999987 421 0 233 4899999999976 666 899
Q ss_pred EEEeCCCcEEEecCCCC
Q 010883 463 VSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 463 ~s~~~Dg~i~iw~~~~~ 479 (498)
+|++.||.|++|++...
T Consensus 346 ~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp EEEETTSEEEEEEHHHH
T ss_pred EEecCCCceEEEEecCh
Confidence 99999999999998654
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=317.00 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=237.4
Q ss_pred cCCCCceEEEEEcCCCC-EEEEEECCCeEEEEEC----CCCe------EEEEEee-cC------CCceeEEEEEeCCCCC
Q 010883 128 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV----ERGW------KIQKDIL-AK------SLRWTVTDTSLSPDQR 189 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~----~~~~------~~~~~~~-~~------~~~~~v~~~~~sp~~~ 189 (498)
..|.++|++++|+|+|+ +||+|+.||.|++|++ .++. ....... .. +|...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45669999999999999 9999999999999999 8775 2222211 11 1567899999999999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 269 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 269 (498)
+|++++.|+.|++||. +++...... +|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGALLNVLN----------------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEEEETTSCEEEEET-TSCEEEEEC----------------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEEeCCCeEEEEeC-CCCeeeecc----------------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 9999999999999993 443322221 36668999999999999999999999999999876544
Q ss_pred E--------------------------------------------------------EEeccCCCeeEEEEeCCCCCEEE
Q 010883 270 L--------------------------------------------------------RILAHTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 270 ~--------------------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~ 293 (498)
. .+..|...|.+++|+ +++.+|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEE
Confidence 3 233577889999998 7888999
Q ss_pred EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccce
Q 010883 294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373 (498)
Q Consensus 294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 373 (498)
+++.||.|++||++ ....+..+..|...|.+++|+|++ +|++++.|+.|++||+++
T Consensus 264 ~~~~d~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~------------------- 319 (425)
T 1r5m_A 264 SASDDGTLRIWHGG----NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ------------------- 319 (425)
T ss_dssp EEETTSCEEEECSS----SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-------------------
T ss_pred EEcCCCEEEEEECC----CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-------------------
Confidence 99999999999998 677788888999999999999999 999999999999999987
Q ss_pred eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc---------------
Q 010883 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--------------- 438 (498)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--------------- 438 (498)
...+..+..|.... ...+|+|++++|++++.||.|++||+.+++
T Consensus 320 ---------------~~~~~~~~~~~~~i------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 320 ---------------NTLLALSIVDGVPI------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp ---------------TEEEEEEECTTCCE------EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred ---------------CcEeEecccCCccE------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 34555555554322 223667799999999999999999999888
Q ss_pred -----EEEEeccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 439 -----QVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 439 -----~~~~~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.+..+..|.. .|++++|+|++++|++++.||.|++|++.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8899999976 999999999999999999999999999863
No 30
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=320.71 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=246.1
Q ss_pred ccccccccccccCCCCCccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEee----------cCCCc
Q 010883 108 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL----------AKSLR 176 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~ 176 (498)
..+....+...-.......+.+|.+.|++++|+| ++++||+|+.||.|++||+.++........ ...|.
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred eccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 3333333333334445567788999999999999 999999999999999999987633222111 13478
Q ss_pred eeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEE
Q 010883 177 WTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG 252 (498)
Q Consensus 177 ~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g 252 (498)
..|.+++|+| ++++|++++.|+.|++||+.+++....... ...+.++.|++. +.+++++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 162 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-----------------EETVYSHHMSPVSTKHCLVAVG 162 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-----------------SSCEEEEEECSSCSSCCEEEEE
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-----------------CCceeeeEeecCCCCCcEEEEE
Confidence 8999999999 788999999999999999998876554432 226889999984 4599999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-------------
Q 010883 253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL------------- 319 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------- 319 (498)
+.++.|++||+.+++.+..+..|...|.+++|+|....+|++++.||.|++||++... ..+..+
T Consensus 163 ~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 163 TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS---GCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp ESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS---CCSEECCTTTTCSCCCTTT
T ss_pred cCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC---cccccccccccccceeecc
Confidence 9999999999999999999999999999999984444479999999999999997322 122222
Q ss_pred --ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883 320 --MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397 (498)
Q Consensus 320 --~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
..|...|.+++|+|++++|++++.|+.|++||+++............ ..
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------------------~~ 290 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-----------------------------NN 290 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-----------------------------CC
T ss_pred ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-----------------------------cc
Confidence 57889999999999999999999999999999988543221100000 00
Q ss_pred CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
.. . ...+... ...+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++.
T Consensus 291 ~~---~--~~~~~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 291 SK---K--GLKFTVS-CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CS---S--CCCCEEC-CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred cc---c--cceeEEe-cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 00 0 0000011 1234567777889999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 010883 478 GNGEAA 483 (498)
Q Consensus 478 ~~~~~~ 483 (498)
..+...
T Consensus 365 ~~~~~~ 370 (408)
T 4a11_B 365 LYEPVP 370 (408)
T ss_dssp C-----
T ss_pred CCCccC
Confidence 876543
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-40 Score=315.56 Aligned_cols=302 Identities=18% Similarity=0.222 Sum_probs=241.1
Q ss_pred ccCCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEee--cCCCceeEEEEEeCCC----CCeEEEEEC
Q 010883 127 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPD----QRHLVYASM 196 (498)
Q Consensus 127 l~~h~~~v~~~~~s~d----g~~la~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~----~~~l~~~s~ 196 (498)
..+|.++|++++|+|+ ...+++++.++.|++|++.++..+..... ...|...|++++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 45666666777999999997755444332 2236678999999999 679999999
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEE---
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI--- 272 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~--- 272 (498)
|+.|++||+.+++...... +|...|.+++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 94 dg~i~v~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYV----------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCEEEEECTTTCCEEEEEE----------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCEEEEEEchhceEeeeec----------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 9999999999877644332 4666999999999 9999999999999999999999988888
Q ss_pred eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee----------------------------EEeccccc
Q 010883 273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA----------------------------GVLMGHLE 324 (498)
Q Consensus 273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------------~~~~~~~~ 324 (498)
..|...|.+++|+ +++++|++++.||.|++||++ ..... .....|..
T Consensus 158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRIN----SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESC----SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECC----CCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 6899999999998 789999999999999999997 32222 23334899
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883 325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 404 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
.|.+++|+ +++|++++.|+.|++||+++.......... .......+..+..|...
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~--- 287 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP--------------------SESNVTILGRFDYSQCD--- 287 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT--------------------TCCCEEEEEEEECSSCC---
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc--------------------CCcchheeccccccCCc---
Confidence 99999998 679999999999999999875432211000 00001334455555422
Q ss_pred EEEEeccccCCC--CcEEEEEecCCeEEEEECCCCc----EEEEeccC--CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 405 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSGE----QVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 405 ~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h--~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
....+|+|+ +++|++|+.||.|++||+.+++ ....+..| ...|++++|+|++++|++++.||.|++||+
T Consensus 288 ---v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 288 ---IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ---SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ---EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 244578888 9999999999999999999875 45577777 799999999999999999999999999998
Q ss_pred C
Q 010883 477 P 477 (498)
Q Consensus 477 ~ 477 (498)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.8e-40 Score=315.86 Aligned_cols=253 Identities=21% Similarity=0.359 Sum_probs=219.8
Q ss_pred cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~ 251 (498)
..+|..+|++++|+|++++|++|+.|+.|+|||+.+++...... +|...|.+++|+|++++|++
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~----------------~h~~~V~~v~~~~~~~~l~s 167 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----------------GHTDSVQDISFDHSGKLLAS 167 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC----------------CCSSCEEEEEECTTSSEEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----------------ccCCcEEEEEEcCCCCEEEE
Confidence 35788899999999999999999999999999999887544332 57779999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 331 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 331 (498)
|+.|+.|++||+.+++++..+.+|...|.+++|+ +++++|++|+.|++|++||++ .+..+..+.+|...|.++.+
T Consensus 168 gs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp EETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE
T ss_pred EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEeCCCccEEEEEE
Confidence 9999999999999999999999999999999998 788999999999999999998 78888999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883 332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411 (498)
Q Consensus 332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
+|++.+|++++.|+.|++||+++. .....+.+|..... .+.|+|
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~----------------------------------~~~~~~~~h~~~v~--~~~~~~ 286 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATK----------------------------------ECKAELREHRHVVE--CISWAP 286 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCCSSCEE--EEEECC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCC----------------------------------ceeeEecCCCceEE--EEEEcC
Confidence 999999999999999999999873 33444455543222 222222
Q ss_pred c----------------cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 412 V----------------YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 412 ~----------------~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
. ...++.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 1 111378999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 010883 476 FPGNGE 481 (498)
Q Consensus 476 ~~~~~~ 481 (498)
+.....
T Consensus 367 ~~~~~~ 372 (410)
T 1vyh_C 367 YKNKRC 372 (410)
T ss_dssp CTTSCC
T ss_pred CCCCce
Confidence 977653
No 33
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.1e-39 Score=310.56 Aligned_cols=286 Identities=17% Similarity=0.219 Sum_probs=237.0
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 212 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~ 212 (498)
.++.++||++ ++||+|. |++|+|||+.+++... .....+|...|++++|+|+|++|++|+.|+.|+|||+.+++...
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 4678999986 5888775 8999999999986554 34556777889999999999999999999999999999987654
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeCCCCCE
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHL 291 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 291 (498)
... +|...+.++.++ +..|++|+.|+.+++||..... .+..+.+|...+..+.|+ +++.+
T Consensus 184 ~~~----------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~ 244 (420)
T 4gga_A 184 NMT----------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRH 244 (420)
T ss_dssp EEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSE
T ss_pred EEe----------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec-CCCCe
Confidence 432 466788888875 6799999999999999988644 456778999999999997 88999
Q ss_pred EEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEE--EeCCCcEEEEeCCCCCCccccccCcccc
Q 010883 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSY 368 (498)
Q Consensus 292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 368 (498)
+++++.|+.+++|+..........+.....|...|.+++|+|++. .+++ |+.|+.|++||+++
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-------------- 310 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-------------- 310 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT--------------
T ss_pred eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc--------------
Confidence 999999999999999855444556777888999999999999654 5554 45799999999987
Q ss_pred cccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe--cCCeEEEEECCCCcEEEEeccC
Q 010883 369 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGEQVAALKYH 446 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h 446 (498)
+..+..+..+... ..+ .|+++++.+++++ .|+.|+|||+.+++++..+.+|
T Consensus 311 --------------------~~~~~~~~~~~~v---~~~----~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH 363 (420)
T 4gga_A 311 --------------------GACLSAVDAHSQV---CSI----LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363 (420)
T ss_dssp --------------------TEEEEEEECSSCE---EEE----EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred --------------------cccceeeccccce---eee----eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence 3445555555432 222 4556788887765 6899999999999999999999
Q ss_pred CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.+.|++++|+|+|++|+||+.||+|+|||+.....
T Consensus 364 ~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 364 TSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 99999999999999999999999999999976543
No 34
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-41 Score=327.02 Aligned_cols=324 Identities=15% Similarity=0.213 Sum_probs=240.2
Q ss_pred ccc-cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 125 WPV-DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 125 ~~l-~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +...... ....|...|++++|+|++++|++++.|+.
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS-LTYDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS-EEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee-eeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 345 78999999999999 999999999999999999876 4211111 11247779999999999999999999999
Q ss_pred EEEEECC---CCceeccccccccccCccccccCCCCceecEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec
Q 010883 200 VHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 274 (498)
Q Consensus 200 i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~--~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 274 (498)
|++||+. +++........ ....+.+... ++...+.++. +++++.+|++|+.|+.|++||+.+++.+..+..
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCE-CIRKINLKNF---GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG---SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEeccccCCceeeccccc-eeEEEEccCc---ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999995 44433322211 1111111110 1334677777 668999999999999999999999999999987
Q ss_pred --cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEEEEEc----CCCCEEEEEeCCCcE
Q 010883 275 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSR----GDGRYLISNGKDQAI 347 (498)
Q Consensus 275 --~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~----~~~~~l~s~~~dg~i 347 (498)
|...|++++|+ +++.+|++|+.||.|++||++ .+..+..+. .|...|.+++|+ |++.+|++++.|+.|
T Consensus 211 ~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 211 SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 89999999998 789999999999999999998 777877775 788899999665 567899999999999
Q ss_pred EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc--CceeEEEEEEEeccccCCCCcEEEEEec
Q 010883 348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSVLRTLIRCHFSPVYSTGQKYIYTGSH 425 (498)
Q Consensus 348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 425 (498)
++||+++.......... ...+....+.+....+... .+.+ |... + .+.+|+ ++++|++|+.
T Consensus 286 ~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~--v----~~l~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINS----DEQPSMEHFLPIEKGLEEL------NFCGIRSLNA--L----STISVS-NDKILLTDEA 348 (437)
T ss_dssp EEEETTTTEEEEEEESS----SSCCCGGGGSCBCSSGGGC------CCCCCCSGGG--G----CCEEEE-TTEEEEEEGG
T ss_pred EEEEcCCCcEEEEEEcC----CCCCccceecccccccccc------eecccccCCc--e----EEEEEC-CceEEEecCC
Confidence 99999875433222110 0111111222222111100 0112 2211 1 223455 6799999999
Q ss_pred CCeEEEEECCCCcEEEEecc-------------------------------------CCCCeeeeEEcCC--CCeEEEEe
Q 010883 426 DSCVYVYDLVSGEQVAALKY-------------------------------------HTSPVRDCSWHPS--QPMLVSSS 466 (498)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~l~~sp~--~~~l~s~~ 466 (498)
||.|++||+.+++.+..+.+ |...|++++|+++ +.+|++|+
T Consensus 349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99999999999887666654 8899999999998 77999999
Q ss_pred CCCcEEEec
Q 010883 467 WDGDVVRWE 475 (498)
Q Consensus 467 ~Dg~i~iw~ 475 (498)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=311.96 Aligned_cols=297 Identities=15% Similarity=0.189 Sum_probs=234.0
Q ss_pred cccCCCCceEEEEEcCCCCEE-EEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC---CCeEEEEECCC
Q 010883 126 PVDQTTSRAYVSQFSADGSLF-VAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSP 198 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~l-a~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~s~d~ 198 (498)
.+.+|...|++++|+|++..+ ++|+. |+.|+||++.++....... ..|...|.+++|+|+ +++|++++.|+
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee--ecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 456799999999999999655 45655 8999999999886543322 256678999999998 69999999999
Q ss_pred eEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEE------EcCCCCEEEEEeCCCeEEEEECCCCe-eeE
Q 010883 199 IVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLK------FSTDGRELVAGSSDDCIYVYDLEANK-LSL 270 (498)
Q Consensus 199 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~------~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~ 270 (498)
.|++||+.+++ ..... .+|...|.++. |+|++++|++++.||.|++||+.+++ .+.
T Consensus 91 ~i~iwd~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV----------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp CEEEECTTSCSSCSEEE----------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred eEEEEeCCCCCccEEEE----------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 99999998876 22221 14667899995 56899999999999999999999887 677
Q ss_pred EEeccCC----CeeEEEEe---CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC---CCCEEEE
Q 010883 271 RILAHTS----DVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLIS 340 (498)
Q Consensus 271 ~~~~~~~----~v~~~~~~---~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s 340 (498)
.+..|.+ .+.+++|. .+++++|++++.||.|++||++ .... .....|...|.+++|+| ++.+|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----NMAL-RWETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----TTEE-EEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----cCce-eeecCCCCceEEEEcCCCCCCCCEEEE
Confidence 7766554 89999842 2789999999999999999997 4444 44466889999999999 9999999
Q ss_pred EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-E
Q 010883 341 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-Y 419 (498)
Q Consensus 341 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 419 (498)
++.||.|++||+++...... .....+.+|... + .+.+|+|+++ +
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~-----------------------------~~~~~~~~~~~~--v----~~~~~~~~~~~~ 274 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKG-----------------------------FASVSEKAHKST--V----WQVRHLPQNREL 274 (357)
T ss_dssp EESTTEEEEEEEEEEETTTE-----------------------------EEEEEEECCSSC--E----EEEEEETTEEEE
T ss_pred ECCCCeEEEEeCcCCCcccc-----------------------------eeeeccCCCcCC--E----EEEEECCCCCcE
Confidence 99999999999987432211 011123344422 2 2235667888 8
Q ss_pred EEEEecCCeEEEEECCCC-------------------cEEEEeccCCCCeeeeEEcCCCCeEE-EEeCCCcEEEecCCCC
Q 010883 420 IYTGSHDSCVYVYDLVSG-------------------EQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN 479 (498)
Q Consensus 420 l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~sp~~~~l~-s~~~Dg~i~iw~~~~~ 479 (498)
|++++.||.|++||+.++ +.+..+.+|..+|++++|+|++++|+ +++.||.|++|++...
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999999999754 46777889999999999999999988 8999999999999765
Q ss_pred C
Q 010883 480 G 480 (498)
Q Consensus 480 ~ 480 (498)
.
T Consensus 355 ~ 355 (357)
T 3i2n_A 355 N 355 (357)
T ss_dssp -
T ss_pred c
Confidence 3
No 36
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.1e-40 Score=312.15 Aligned_cols=301 Identities=12% Similarity=0.061 Sum_probs=221.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCC-------eEEEEECCCCe-------EEEEEeecCCCceeEEEEEeCCCCCeEEEEE-
Q 010883 131 TSRAYVSQFSADGSLFVAGFQAS-------QIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 195 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg-------~i~vw~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s- 195 (498)
.-||+|++|+|||++||+|+.|. .|++|++..+. ..........|...|.++++ +++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 45899999999999999998643 59999987642 11222345566677877766 455666654
Q ss_pred ----------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 010883 196 ----------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL 263 (498)
Q Consensus 196 ----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~ 263 (498)
.|+.+++|++............ . .......+...+.+++|+|||+++++++ .|+.|+|||+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS--V-----DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE--E-----CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeee--e-----ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 4678999987654321111000 0 0011112344689999999999987654 6899999999
Q ss_pred CCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee--EEeccccccEEEEEEcCCCCEEEEE
Q 010883 264 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--GVLMGHLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~ 341 (498)
.+++.+..+ .|...|.+++|+ |++++|++++.++.+.+|+. .+..+ .....|...|.+++|+|++++++++
T Consensus 165 ~~~~~~~~~-~~~~~V~~v~fs-pdg~~l~s~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 165 SDLTEKFEI-ETRGEVKDLHFS-TDGKVVAYITGSSLEVISTV-----TGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp TTTEEEEEE-ECSSCCCEEEEC-TTSSEEEEECSSCEEEEETT-----TCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEe-CCCCceEEEEEc-cCCceEEeccceeEEEEEec-----cCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 999998877 578899999998 88999999987665555544 34433 3445688899999999999999999
Q ss_pred eCCC----cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883 342 GKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 417 (498)
Q Consensus 342 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 417 (498)
+.|+ .+++|++....... .....+.+|... + .+.+|||||
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~--V----~~~~~Spdg 281 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSV------------------------------LRSKQVTNRFKG--I----TSMDVDMKG 281 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEE------------------------------EEEEEEESSCSC--E----EEEEECTTS
T ss_pred ecCCcceeEEeecccccceecc------------------------------eeeeeecCCCCC--e----EeEEECCCC
Confidence 9887 58888876532100 112334444422 2 234678899
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEEe-ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 010883 418 KYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 418 ~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
++||+|+.|+.|+|||+.+++++..+ .+|..+|++++|+|||++|||++.|++|+||+++......
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~ 348 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANY 348 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCc
Confidence 99999999999999999999999875 7999999999999999999999999999999997654433
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-40 Score=322.28 Aligned_cols=299 Identities=14% Similarity=0.213 Sum_probs=243.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEE
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 203 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iw 203 (498)
..|...|++++|+|++++|++|+.||.|++|++.+ +.. .......|...|++++|+|+ +++|++++.|+.|++|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN--SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC--EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc--chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 46899999999999999999999999999999987 221 22344678889999999998 8999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEecc------C
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH------T 276 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~------~ 276 (498)
|+.+++....... .+......+|...|.+++|+|+ +.+|++++.|+.|++||+.+++.+..+..+ .
T Consensus 142 d~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 142 DMNKCTESPSNYT-------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp BTTTTSSCTTTCC-------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred ECCCCcccccccc-------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence 9988762110000 0000112357779999999998 789999999999999999999998888766 7
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCC---eEEEEcCccccCCC-ceeEEec-cccccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKG-KPAGVLM-GHLEGITFIDSRG-DGRYLISNGKDQAIKLW 350 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~-~~~~~~~-~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iw 350 (498)
..|.+++|+|.+..+|++++.|+ .|++||++ .. .++..+. +|...|.+++|+| ++++|++++.|+.|++|
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR----NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT----STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCC----CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 89999999855558999999999 99999998 43 5666777 8999999999999 99999999999999999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC-cEEEEEecCCeE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCV 429 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i 429 (498)
|+++ .+.+..+..|.... .+++|+|++ .+|++++.||.|
T Consensus 291 d~~~----------------------------------~~~~~~~~~~~~~v------~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 291 NPES----------------------------------AEQLSQFPARGNWC------FKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp CSSS----------------------------------CCEEEEEECSSSCC------CCEEECTTCTTEEEECCSSSEE
T ss_pred eCCC----------------------------------CccceeecCCCCce------EEEEECCCCCCEEEEEecCCcE
Confidence 9987 35566666665322 234677788 899999999999
Q ss_pred EEEECCCCcEEEEe-----------------------------------ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 430 YVYDLVSGEQVAAL-----------------------------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 430 ~iwd~~~~~~~~~~-----------------------------------~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
++||+.++...... ..|..++++++|+|+|++|++++.||.|+||
T Consensus 331 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 331 EVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT 410 (416)
T ss_dssp EEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred EEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence 99999876532211 1167788899999999999999999999999
Q ss_pred cCCCC
Q 010883 475 EFPGN 479 (498)
Q Consensus 475 ~~~~~ 479 (498)
++.+.
T Consensus 411 ~~~~~ 415 (416)
T 2pm9_A 411 NPKIS 415 (416)
T ss_dssp CCCCC
T ss_pred EeccC
Confidence 99864
No 38
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=300.21 Aligned_cols=251 Identities=22% Similarity=0.286 Sum_probs=220.5
Q ss_pred ecCCCceeEEEEEeCCC----CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883 171 LAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 246 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~----~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g 246 (498)
...+|...|.+++|+|+ +.+|++|+.|++|+||++.+++......+ .+|...|.+++|++++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l--------------~gh~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL--------------EGHQLGVVSVDISHTL 92 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE--------------CCCSSCEEEEEECSSS
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee--------------ccCCCCEEEEEECCCC
Confidence 34678999999999985 57999999999999999977654322211 2678899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883 247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 326 (498)
Q Consensus 247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v 326 (498)
.++++++.|+.|++||+.+++.+..+..|...+.+++|+ +++++|++|+.||.|++||++ .+.....+..|...|
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~----~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVE----SGKKEYSLDTRGKFI 167 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETT----TCSEEEEEECSSSCE
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcC----CCceeEEecCCCceE
Confidence 999999999999999999999999999999999999998 889999999999999999998 777888888899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883 327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 406 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
.+++|+|++++|++++.|+.|++||+++ ++.+..+.+|....
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~----------------------------------~~~~~~~~~h~~~v---- 209 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIAT----------------------------------GKLLHTLEGHAMPI---- 209 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCC----
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------------CcEEEEEcccCCce----
Confidence 9999999999999999999999999987 35666677766332
Q ss_pred EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||+|++||+..+.
T Consensus 210 --~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 210 --RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp --CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred --eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 233677899999999999999999999999999999999999999999999999999999999999998654
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-39 Score=310.35 Aligned_cols=290 Identities=20% Similarity=0.244 Sum_probs=233.4
Q ss_pred CCCCceEE--EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883 129 QTTSRAYV--SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 129 ~h~~~v~~--~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~ 206 (498)
+|...+++ ++|++ ..+++++.|+.|++|++.++....... ..|...|++++|+|++++|++++.||.|++||+.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 66665444 55554 558888899999999999986554432 3367789999999999999999999999999999
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEEeccCCCeeEEEEe
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTSDVNTVCFG 285 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~ 285 (498)
+++...... +|...|.+++| ++++|++|+.||.|++||+. ....+..+..|...|.+++|+
T Consensus 165 ~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 165 SQTKLRTMA----------------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TCCEEEEEC----------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCeEEEEec----------------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 877544332 46668999999 46799999999999999998 566677888999999999998
Q ss_pred CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEe--CCCcEEEEeCCCCCCccccc
Q 010883 286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG--KDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~ 362 (498)
+++.+|++|+.||.|++||++ ....+..+..|...|.+++|+|++. ++++++ .|+.|++||+++.
T Consensus 227 -~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~------- 294 (401)
T 4aez_A 227 -SDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG------- 294 (401)
T ss_dssp -TTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-------
T ss_pred -CCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-------
Confidence 689999999999999999998 7788888999999999999999764 556654 7999999999873
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE--ecCCeEEEEECCCCcEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG--SHDSCVYVYDLVSGEQV 440 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg~i~iwd~~~~~~~ 440 (498)
..+..+..+.. + .+.+|+|++++++++ +.||.|++||+.+++..
T Consensus 295 ---------------------------~~~~~~~~~~~---v----~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 295 ---------------------------ARVNTVDAGSQ---V----TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp ---------------------------CEEEEEECSSC---E----EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred ---------------------------CEEEEEeCCCc---E----EEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 44444443322 2 233677799999995 48999999999986554
Q ss_pred E--EeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCcc
Q 010883 441 A--ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL 486 (498)
Q Consensus 441 ~--~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 486 (498)
. .+.+|...|.+++|+|++++|++++.||.|++|++..++......
T Consensus 341 ~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 341 KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 4 467899999999999999999999999999999999887655443
No 40
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=292.62 Aligned_cols=300 Identities=17% Similarity=0.222 Sum_probs=236.2
Q ss_pred cccCCCCCccccC--CCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883 117 RYLPVNGPWPVDQ--TTS--RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 192 (498)
Q Consensus 117 ~~~~~~~~~~l~~--h~~--~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 192 (498)
+++|..+...|++ +.+ ..++++||+++ +||+|. |++|+|||+.+++.+.. ....+|...|++++|+|++++|+
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEE
Confidence 4555555555532 222 35789999986 777764 89999999999866554 35567888899999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEE
Q 010883 193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLR 271 (498)
Q Consensus 193 ~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~ 271 (498)
+|+.|+.|++|++.+++...... +|...+.++.+ ++..+++++.++.+++|+..... .+..
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~----------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~ 145 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMT----------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT 145 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred EEECCCcEEEeecCCceeEEEec----------------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE
Confidence 99999999999999987654433 35556766555 56789999999999999988764 4566
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE---EEEeCCCcEE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL---ISNGKDQAIK 348 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l---~s~~~dg~i~ 348 (498)
+.+|...+.++.+. +++++|++++.||.|++||++..............+...|.++.++|++..+ ++++.++.|+
T Consensus 146 ~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 146 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EcCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 77999999999997 8889999999999999999985544445566777788999999999976533 4667889999
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe--cC
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HD 426 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~d 426 (498)
+||.+... .......... +... .++|++..+++++ .|
T Consensus 225 lwd~~~~~----------------------------------~~~~~~~~~~---v~~~----~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 225 IWNVCSGA----------------------------------CLSAVDAHSQ---VCSI----LWSPHYKELISGHGFAQ 263 (318)
T ss_dssp EEETTTCC----------------------------------EEEEEECSSC---EEEE----EEETTTTEEEEEECTTT
T ss_pred EEeccccc----------------------------------ccccccceee---eeee----eecccccceEEEEEcCC
Confidence 99988732 2222222221 1222 3455777777654 79
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 427 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 427 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
+.|++||+.+++++..+.+|.+.|++++|+|++++|+||+.||+|+|||+...
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999754
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=301.92 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=206.3
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~ 206 (498)
..|...|++++|+||+ .|++|+.||+|+|||+.+++.+.. .....+|...|++++|+|++++|++|+.|++|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 4567889999999995 688999999999999998754433 23345788899999999999999999999999999999
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCeeEEE
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVC 283 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~ 283 (498)
+++....+. +|...|.+++|++++. +|++++.|+.|++||+.+++....+. .|...+.+++
T Consensus 158 ~~~~~~~~~----------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 158 QQVVLSSYR----------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp TTEEEEEEC----------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred CCcEEEEEc----------------CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 987654432 5778999999999884 78999999999999999998877764 4566799999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
|+|.++++|++|+.||.|++||++ .++++..+.+|...|++++|+|++ ++|++++.|++|+|||+++
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-------- 289 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-------- 289 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--------
T ss_pred ecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Confidence 997788999999999999999998 788889999999999999999998 5799999999999999986
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-EEEEEecCCeEEEEECCCCc
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~ 438 (498)
..+..+.+|... +. +++|+|++. +|++++.|++|++|++.+..
T Consensus 290 ---------------------------~~~~~~~~H~~~--V~----~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 290 ---------------------------SELFRSQAHRDF--VR----DATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ---------------------------CEEEEECCCSSC--EE----EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ---------------------------CcEEEEcCCCCC--EE----EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 334556677643 22 335666775 67799999999999997754
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-40 Score=320.60 Aligned_cols=293 Identities=15% Similarity=0.260 Sum_probs=240.8
Q ss_pred CCceEEEEEcCCCC-EEEEE----------ECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 131 TSRAYVSQFSADGS-LFVAG----------FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 131 ~~~v~~~~~s~dg~-~la~~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
...|.+++|+|+|+ +||+| +.|+.|+||++.++.... ......|...|++++|+|++++|++++.|+.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 34688999999997 99999 889999999998764221 1222356778999999999999999999999
Q ss_pred EEEEECCCCc----eeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe------e
Q 010883 200 VHIVDVGSGT----MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK------L 268 (498)
Q Consensus 200 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~------~ 268 (498)
|++|++.+.. .... ..+|...|.+++|+|+ +++|++++.|+.|++||+.+++ .
T Consensus 91 v~vw~~~~~~~~~~~~~~----------------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 91 LELYSTNEANNAINSMAR----------------FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp EEEECCSSTTSCCCEEEE----------------CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred EEEeecccccccccchhh----------------ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence 9999998721 1111 1247779999999998 8999999999999999999876 3
Q ss_pred eEE---EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------cccEEEEEEcCCC-CEE
Q 010883 269 SLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDG-RYL 338 (498)
Q Consensus 269 ~~~---~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~~~-~~l 338 (498)
... +..|...|.+++|+|..+.+|++++.||.|++||++ ..+.+..+..+ ...|.+++|+|++ .+|
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 332 357899999999985448999999999999999998 67777777766 7889999999997 689
Q ss_pred EEEeCCC---cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccC
Q 010883 339 ISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 339 ~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s 414 (498)
++++.|+ .|++||+++... .+..+. +|.. .+ .+++|+
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~---------------------------------~~~~~~~~~~~--~v----~~~~~s 271 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANT---------------------------------PLQTLNQGHQK--GI----LSLDWC 271 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTS---------------------------------CSBCCCSCCSS--CE----EEEEEC
T ss_pred EEEECCCCCceEEEEeCCCCCC---------------------------------CcEEeecCccC--ce----eEEEeC
Confidence 9999998 999999987421 112222 3332 12 233566
Q ss_pred C-CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEecCCCCCCCC
Q 010883 415 T-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGEAA 483 (498)
Q Consensus 415 ~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw~~~~~~~~~ 483 (498)
| ++++|++++.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.||.|++|++.......
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 6 89999999999999999999999999999999999999999999 799999999999999998876543
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.9e-39 Score=301.89 Aligned_cols=291 Identities=20% Similarity=0.272 Sum_probs=241.2
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
+..+|.+++|+|||++++++..++.+.+|......... ....|...|++++|+|++++|++++ |+.|++|++.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 46789999999999999999888877777665542222 2236788999999999999999998 9999999998765
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCCeeEEEEeCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDE 287 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~ 287 (498)
......... ..+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+ +
T Consensus 84 ~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~ 151 (337)
T 1gxr_A 84 NKSPVSQLD-----------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-P 151 (337)
T ss_dssp CCSCSEEEE-----------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-T
T ss_pred ceeeeeccc-----------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-C
Confidence 432222111 11356689999999999999999999999999999887 566777899999999998 7
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
++++|++++.||.|++||++ ..+.+..+..|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------ 215 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------------ 215 (337)
T ss_dssp TSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------
T ss_pred CCCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------------
Confidence 89999999999999999998 77888899999999999999999999999999999999999873
Q ss_pred ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 447 (498)
+.+..+.... .+ .+++|+|++++|++++.++.|++||+.+++.. .+..|.
T Consensus 216 ----------------------~~~~~~~~~~---~v----~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~ 265 (337)
T 1gxr_A 216 ----------------------RQLQQHDFTS---QI----FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE 265 (337)
T ss_dssp ----------------------EEEEEEECSS---CE----EEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS
T ss_pred ----------------------ceEeeecCCC---ce----EEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc
Confidence 3333332221 11 23367779999999999999999999988764 567899
Q ss_pred CCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 448 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 448 ~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
..|.+++|+|++++|++++.||.|++|++..+...
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 99999999999999999999999999999876543
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-40 Score=317.28 Aligned_cols=297 Identities=15% Similarity=0.144 Sum_probs=221.4
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
....+.++|++++|+|+|++||+|+.|+.|+||++.++. ........+|...|++++|+|++++|++++.|+.|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345567899999999999999999999999999999873 1223345678889999999999999999999999999999
Q ss_pred CCCc-eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEEec-cCCCee
Q 010883 206 GSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILA-HTSDVN 280 (498)
Q Consensus 206 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~ 280 (498)
.+++ ...... ..+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+.. |...|.
T Consensus 85 ~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 85 RPDGTWKQTLV--------------LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp ----CCCCEEE--------------CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred CCCCceeeeeE--------------ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 8876 111111 12466799999999999999999999999999999887 3667777 999999
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEcCccccC--------------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883 281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 346 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~ 346 (498)
+++|+ +++++|++++.|+.|++||++.... .+..+..+ +|...|.+++|+|++++|++++.|+.
T Consensus 151 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 151 SLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 99998 7889999999999999999852210 13455556 89999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 426 (498)
|++||+++..... ..+..+.+|... + .+++|+|++++|++|+.+
T Consensus 229 i~iwd~~~~~~~~------------------------------~~~~~~~~~~~~--v----~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 229 VTIAYPSAPEQPP------------------------------RALITVKLSQLP--L----RSLLWANESAIVAAGYNY 272 (377)
T ss_dssp EC-CEECSTTSCE------------------------------EECCCEECSSSC--E----EEEEEEETTEEEEEESSS
T ss_pred EEEEECCCCCCcc------------------------------eeeEeecCCCCc--e----EEEEEcCCCCEEEEEcCC
Confidence 9999998754211 113334445432 2 233566799999999877
Q ss_pred CeEEEEECCCCc------------------------------EE------EEe----------------ccCCCCeeeeE
Q 010883 427 SCVYVYDLVSGE------------------------------QV------AAL----------------KYHTSPVRDCS 454 (498)
Q Consensus 427 g~i~iwd~~~~~------------------------------~~------~~~----------------~~h~~~v~~l~ 454 (498)
+.+ +|+..... .+ ..+ ..|...|++++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR 351 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe
Confidence 755 66654211 00 011 13999999999
Q ss_pred EcCCCC----eEEEEeCCCcEEEecC
Q 010883 455 WHPSQP----MLVSSSWDGDVVRWEF 476 (498)
Q Consensus 455 ~sp~~~----~l~s~~~Dg~i~iw~~ 476 (498)
+.+... .|+|++.||.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCCCCCceEEEEeecCCCcEEEecC
Confidence 776543 5999999999999986
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-38 Score=306.76 Aligned_cols=292 Identities=13% Similarity=0.177 Sum_probs=233.8
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
.....+..| ..+....|+|++++||+|+.||.|++||+.++.... ....|...|++++|+|++++|++++.|+.|+
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 164 (420)
T 3vl1_A 89 DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGEALISSSQDMQLK 164 (420)
T ss_dssp ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCCEEEEEeCCCeEE
Confidence 334445555 555666899999999999999999999999874433 4467888999999999999999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec---cCCC
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSD 278 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~ 278 (498)
+||+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.. |...
T Consensus 165 iwd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 165 IWSVKDGSNPRTLI----------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG 228 (420)
T ss_dssp EEETTTCCCCEEEE----------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC
T ss_pred EEeCCCCcCceEEc----------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC
Confidence 99999876543322 4677999999999999999999999999999999998888874 4445
Q ss_pred eeEEEE---------------------eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCC
Q 010883 279 VNTVCF---------------------GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGR 336 (498)
Q Consensus 279 v~~~~~---------------------~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~ 336 (498)
|.+++| + +++++|++|+.||.|++||++ ....+..+ ..|...|.+++|+|++.
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVF----SKEQTIQLPSKFTCSCNSLTVDGNNA 303 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETT----TCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred ccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECC----CCceeEEcccccCCCceeEEEeCCCC
Confidence 555554 4 678899999999999999998 55555555 45888999999999998
Q ss_pred -EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccC
Q 010883 337 -YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 337 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s 414 (498)
+|++++.||.|++||+++.. ..+..+.. +..... .. +.
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~---------------------------------~~~~~~~~~~~~~v~---~~----~~ 343 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPE---------------------------------CPVGEFLINEGTPIN---NV----YF 343 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEEESTTSCEE---EE----EE
T ss_pred CEEEEEeCCCeEEEEEcCCCc---------------------------------CchhhhhccCCCCce---EE----Ee
Confidence 99999999999999998743 22333443 222111 11 22
Q ss_pred CCCcEEEEEecCCeEEEEECCCC---------cEEEEeccCCCCeeeeEEcCCCC---eEEEEeCCCcEEEecCCC
Q 010883 415 TGQKYIYTGSHDSCVYVYDLVSG---------EQVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~sp~~~---~l~s~~~Dg~i~iw~~~~ 478 (498)
+++++|++++.||.|++||+... .....+..|.+.|.+++|+|+++ .|++++.+|.+.+|++..
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 36889999999999999998763 22234557889999999999999 788888999999999865
No 46
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-38 Score=290.16 Aligned_cols=260 Identities=18% Similarity=0.193 Sum_probs=206.7
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIV 203 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~iw 203 (498)
.+.+|...|++++|+|+|++||+|+.|++|+||++..+.. .......+|...|.+++|+|+ +++|++++.|++|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4678999999999999999999999999999999975311 112244678889999999874 8999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCCe
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDV 279 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v 279 (498)
|+.+++....... .+|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+.+|...|
T Consensus 83 d~~~~~~~~~~~~--------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 83 KEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (297)
T ss_dssp EBSSSCBCCCEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred EcCCCceEEEEEe--------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence 9987643222111 146678999999997 8899999999999999998763 235677999999
Q ss_pred eEEEEeCC------------CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---CEEEEEeCC
Q 010883 280 NTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD 344 (498)
Q Consensus 280 ~~~~~~~~------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~d 344 (498)
.+++|+|. ++++|++|+.|++|++||++...........+.+|...|.+++|+|++ .+|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 99999853 257999999999999999972211122566788999999999999984 788888899
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
++|++||++.... ..
T Consensus 229 ~~v~iWd~~~~~~------------------------------------------------------------~~----- 243 (297)
T 2pm7_B 229 RTCIIWTQDNEQG------------------------------------------------------------PW----- 243 (297)
T ss_dssp SCEEEEEESSTTS------------------------------------------------------------CC-----
T ss_pred CcEEEEEeCCCCC------------------------------------------------------------cc-----
Confidence 9999998764110 00
Q ss_pred cCCeEEEEECCCCcEEEEe--ccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 425 HDSCVYVYDLVSGEQVAAL--KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
....+ ..|...|.+++|+|++++|++++.||.|++|+....
T Consensus 244 --------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 244 --------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp --------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred --------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 00011 346788999999999999999999999999998643
No 47
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.9e-39 Score=304.03 Aligned_cols=282 Identities=14% Similarity=0.158 Sum_probs=197.9
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC------CCeEEEEECCCCc
Q 010883 136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------SPIVHIVDVGSGT 209 (498)
Q Consensus 136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~------d~~i~iwd~~~~~ 209 (498)
.+.+.+++.++.+ ..+.....|++... ....|...|++++|+|||++|++++. |+.|++|+..++.
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp --------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCCccceEEec-CCCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 3455666655444 44667889987643 22468889999999999999999997 7789999988765
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EEeccCCCeeEEEEe
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFG 285 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~ 285 (498)
......... .+|...|.+++|+|+++ +++++.||.|+|||+.+++... ...+|...|++++|+
T Consensus 82 ~~~~~~~~~------------~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 82 PNESLCTAG------------VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp -CGGGCSEE------------EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC
T ss_pred cceeEeccc------------CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC
Confidence 433222111 13556899999999986 6677889999999998876532 344799999999998
Q ss_pred CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
+++++|++|+.||.|++||++ .++.+..+.+|...|++++|+|++. ++++++.|+.|++||+++.......
T Consensus 149 -pdg~~l~sgs~dg~v~iwd~~----~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--- 220 (357)
T 4g56_B 149 -SDGTQAVSGGKDFSVKVWDLS----QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--- 220 (357)
T ss_dssp -SSSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---
T ss_pred -CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---
Confidence 789999999999999999998 7888999999999999999999875 7899999999999999875432211
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCC-CcEEEEEecCCeEEEEECCCCcEEEEe
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~ 443 (498)
..+.....+..+ +|+|+ +.+|++|+.|+.|++||+.+++.+..+
T Consensus 221 -------------------------------~~~~~~~~v~~v----~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 221 -------------------------------DFCASDTIPTSV----TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp -------------------------------CCTTCCSCEEEE----EECTTSTTEEEEEESSSCEEEEESSCGGGCEEE
T ss_pred -------------------------------eeccccccccch----hhhhcccceEEEeecccceeEEECCCCcEeEEE
Confidence 111111122233 44555 678999999999999999999999999
Q ss_pred ccCCCCeeeeEEcCCC-CeEEEEeCCCcEEEecCCCCCC
Q 010883 444 KYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 444 ~~h~~~v~~l~~sp~~-~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.+|...|++++|+|++ ++|++++.||+|+|||+..++.
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 9999999999999997 5899999999999999987643
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-37 Score=341.94 Aligned_cols=335 Identities=20% Similarity=0.247 Sum_probs=264.8
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|.+.|++++|+|||++||+|+.||+|+|||+.++..+.. ..+|...|.+++|+|++++|++++.|+.|++|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 346779999999999999999999999999999999999866554 35788899999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 281 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 281 (498)
|+.+++...... +|...|.+++|+| ++.++++|+.|+.|++||+.+++....+.+|...|++
T Consensus 685 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 685 DSATGKLVHTYD----------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred ECCCCceEEEEc----------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 999887654432 4667899999999 5568999999999999999999999999999999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccC--------------------------------------------------
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNV-------------------------------------------------- 311 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------------------------------------------------- 311 (498)
++|+ +++++|++++.||.|++||++....
T Consensus 749 ~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 749 CRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 9998 7899999999999999999863210
Q ss_pred CCceeE-EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC-CCC
Q 010883 312 KGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCD 389 (498)
Q Consensus 312 ~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 389 (498)
.+.... ...+|...|.+++|+|+++++++++.|+.|++||+.+........ .....+..+.+.+++..+.. ..+
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR----GHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC----CCccceEEEEECCCCCEEEEEeCC
Confidence 000111 112678889999999999999999999999999998754433221 12223344445554433322 223
Q ss_pred ceEEEEccCc----------------------------------------eeE--EEEEEEeccccCCCCcEEEEEecCC
Q 010883 390 QSVATYKGHS----------------------------------------VLR--TLIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 390 ~~~~~~~~~~----------------------------------------~~~--~~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
..+..+.... ... .......+.+++|+++++++|+.+|
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 3344332110 000 0000123446888999999999999
Q ss_pred eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++.++...
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 9999999999999999999999999999999999999999999999999876544
No 49
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-37 Score=290.43 Aligned_cols=248 Identities=20% Similarity=0.299 Sum_probs=213.9
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
...+|...|++++|+|++++|++++.|+.|++||+.+++...... .|...|.+++|+|++++|+
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP----------------LRSSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----------------CSSSCEEEEEECTTSSEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee----------------cCCccEEEEEECCCCCEEE
Confidence 446788899999999999999999999999999998877544332 3555899999999999999
Q ss_pred EEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccE
Q 010883 251 AGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 326 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v 326 (498)
+|+.|+.|++||+.+. .....+.+|...|.++.|+ +++ .+++++.|++|++||++ .+..+..+.+|...|
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~d~~i~~wd~~----~~~~~~~~~~h~~~v 187 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDN-QIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDV 187 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE-ETT-EEEEEETTSCEEEEETT----TTEEEEEECCCSSCE
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC-CCC-cEEEEECCCcEEEEECC----CCcEEEEEcCCCCce
Confidence 9999999999999875 3456677999999999997 444 58899999999999998 788889999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEE
Q 010883 327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 406 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (498)
.+++|+|++++|++++.|+.|++||+++ +..+..+.+|.....
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~----------------------------------~~~~~~~~~h~~~v~--- 230 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVRE----------------------------------GMCRQTFTGHESDIN--- 230 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCCSSCEE---
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------------CeeEEEEcCCcCCEE---
Confidence 9999999999999999999999999987 355666777764322
Q ss_pred EEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 407 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 407 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+.+|+|++++|++|+.||.|++||+.+++.+..+.. +...|++++|+|++++|++|+.||.|++||+....
T Consensus 231 ---~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 231 ---AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp ---EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ---EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 236777999999999999999999999988877752 33579999999999999999999999999987654
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-38 Score=309.91 Aligned_cols=284 Identities=15% Similarity=0.215 Sum_probs=229.2
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 212 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~ 212 (498)
.+++++|+|+|++|++++.|+.|++||+.++... .....+ ..+....|+|++++|++++.|+.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee---eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 4557899999999999999999999999875221 122233 345566789999999999999999999998876644
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 292 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 292 (498)
... +|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|
T Consensus 134 ~~~----------------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 196 (420)
T 3vl1_A 134 IDQ----------------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNV 196 (420)
T ss_dssp ETT----------------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEE
T ss_pred ecc----------------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEE
Confidence 322 477799999999999999999999999999999999999999999999999998 789999
Q ss_pred EEeeCCCeEEEEcCccccCCCceeEEecc---ccccEEE---------------------EEEcCCCCEEEEEeCCCcEE
Q 010883 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HLEGITF---------------------IDSRGDGRYLISNGKDQAIK 348 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~v~~---------------------l~~~~~~~~l~s~~~dg~i~ 348 (498)
++++.||.|++||++ .++.+..+.. |...+.+ ++|+|++++|++++.||.|+
T Consensus 197 ~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 197 LSASLDGTIRLWECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEETTSCEEEEETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred EEEcCCCcEEEeECC----CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 999999999999998 6777777764 3334444 45578999999999999999
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCc-EEEEEecC
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQK-YIYTGSHD 426 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~d 426 (498)
+||+++. ..+..+. .|.. .+ .+++|+|++. +|++|+.|
T Consensus 273 i~d~~~~----------------------------------~~~~~~~~~~~~--~v----~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 273 VHNVFSK----------------------------------EQTIQLPSKFTC--SC----NSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp EEETTTC----------------------------------CEEEEECCTTSS--CE----EEEEECSSCTTEEEEEETT
T ss_pred EEECCCC----------------------------------ceeEEcccccCC--Cc----eeEEEeCCCCCEEEEEeCC
Confidence 9999873 2233332 2332 22 2335677888 99999999
Q ss_pred CeEEEEECCCCcE-EEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 427 SCVYVYDLVSGEQ-VAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 427 g~i~iwd~~~~~~-~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
|.|++||+.+++. +..+.. |...|+++.| +++++|++++.||.|++|++......
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCC
Confidence 9999999998754 666765 6677888855 57889999999999999999875443
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-37 Score=328.69 Aligned_cols=294 Identities=18% Similarity=0.243 Sum_probs=251.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
...+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++..+... ..|...|++++|+|++++|++++.||.|++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4567899999999999999999999999999999999998665543 3677799999999999999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 282 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~ 282 (498)
|+.+++...... +|...|.+++|+|++++|++++.||.|++||+.++ .....+..|...|.++
T Consensus 83 ~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred ECCCCcEEEEEe----------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 999887654332 46668999999999999999999999999999987 6677788999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-ccEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
+|+|.++..|++++.||.|++||+. .......+..+. ..+.+++|+| ++.+|++++.||.|++||+++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 217 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----- 217 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-----
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence 9995488999999999999999997 555555555544 8899999999 999999999999999999987
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
+..+..+.+|.... ..++|+|++.+|++++.||.|++||+.+++.
T Consensus 218 -----------------------------~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 218 -----------------------------KSCVATLEGHMSNV------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp -----------------------------TEEEEEEECCSSCE------EEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred -----------------------------CcEEEEEcCCCCCE------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35566666665322 2235677999999999999999999999999
Q ss_pred EEEeccCCCCeeeeEEcCCCCe-EEEEeCCCcEEEecCCCCC
Q 010883 440 VAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 440 ~~~~~~h~~~v~~l~~sp~~~~-l~s~~~Dg~i~iw~~~~~~ 480 (498)
+..+..|...|.+++|+|++.. +++++.|+.+.+|++....
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 9999999999999999999973 3455557778899886543
No 52
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.4e-38 Score=297.16 Aligned_cols=311 Identities=14% Similarity=0.086 Sum_probs=224.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV 200 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i 200 (498)
...+.+|.+.|++++|+|++++||+|+.||.|++||+.++... .......+|...|++++|+| ++++|++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3456899999999999999999999999999999999875321 22233457888999999999 69999999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeEEEe-----
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRIL----- 273 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~~~~~~~----- 273 (498)
++||+.+++.......... .....+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNK-------LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp EEEEECTTSCTTSSCSEEE-------EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred EEEecCCCcccccccCcce-------eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence 9999988643211100000 0011246779999999999 9999999999999999998876543332
Q ss_pred --------ccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccCCCc--eeEEeccccccEEEEEEcCCC----CE
Q 010883 274 --------AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDG----RY 337 (498)
Q Consensus 274 --------~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~----~~ 337 (498)
.|...+.+++|+|. ++.++++++.|+.+.+|+.. ... .+..+.+|...|++++|+|++ ++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK----DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT----TSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC----CCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 57889999999843 48899999999999888876 333 367788899999999999998 89
Q ss_pred EEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC
Q 010883 338 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 417 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 417 (498)
|++++.||.|++||++........ .... .........+......
T Consensus 233 l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLSPLAS----------------------------------EESL--TNSNMFDNSADVDMDA 276 (351)
T ss_dssp EEEEETTSCEEEEEEEECC-------------------------------------------------------------
T ss_pred EEEEcCCCeEEEEeCCCCcCcccc----------------------------------CCcc--cceeccCCCccccccc
Confidence 999999999999999864321110 0000 0000000111111111
Q ss_pred cEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 418 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 418 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.....+.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 1223334455677888777888999999999999999999999999999999999999987643
No 53
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-38 Score=330.92 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=173.8
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
.+|...|++++|+|+|++||+|+.||.|+||+..+.+.... ..|...|.+++|+| +++|++++.|+.|++||+.+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 57899999999999999999999999999999987644322 24667899999999 88999999999999999998
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----------EEEeccC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRILAHT 276 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-----------~~~~~~~ 276 (498)
++...... |...|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|.
T Consensus 89 ~~~~~~~~-----------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 89 QKVLTTVF-----------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp CSEEEEEE-----------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred CcEEEEEc-----------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 87644332 2237999999999999999999999999999988763 1234688
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------------------cccEEEEEEcCCCCEE
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------------LEGITFIDSRGDGRYL 338 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l 338 (498)
+.|.+++|+|.++..|++|+.||.| +||++ ..+.+..+..| ...|++++|+|+|++|
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETT----TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECC----CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 9999999996567899999999999 99998 66777666655 5779999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCC
Q 010883 339 ISNGKDQAIKLWDIRKMSS 357 (498)
Q Consensus 339 ~s~~~dg~i~iwd~~~~~~ 357 (498)
++++.|+.|++||+++...
T Consensus 227 asgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEETTCCEEEEETTTCCE
T ss_pred EEEECCCeEEEEECCCCcE
Confidence 9999999999999987543
No 54
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.2e-38 Score=305.90 Aligned_cols=310 Identities=15% Similarity=0.246 Sum_probs=225.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--------EEEEeecCCCc------------eeEEEEEeCCCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLR------------WTVTDTSLSPDQ 188 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~------------~~v~~~~~sp~~ 188 (498)
.|.+.|++++|+|+|++||+|+.||.|+||++.++.. ........+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987642 11122334666 789999999998
Q ss_pred --CeEEEEECCCeEEEEECCCCceecccccccccc----------Ccccc--------------ccCCCCceecEEEEEE
Q 010883 189 --RHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----------GLDFS--------------AADDGGYSFGIFSLKF 242 (498)
Q Consensus 189 --~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~--------------~~~~~~h~~~i~~~~~ 242 (498)
.+|++++.|+.|++|++.++............. .+.++ .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999997654321100000000 00000 0012468889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCe-eeEE-------EeccCCCeeEEEEeCCCC-CEEEEeeCCCeEEEEcCccccCCC
Q 010883 243 STDGRELVAGSSDDCIYVYDLEANK-LSLR-------ILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVWDRRCLNVKG 313 (498)
Q Consensus 243 s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~-------~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~ 313 (498)
+|++++|++| .|+.|++||+.+.. .... +..|...|.+++|+ +++ ++|++|+.||.|++||++......
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 9999999998 79999999998443 3332 44899999999998 555 999999999999999998332222
Q ss_pred ceeEEeccccc------------cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 314 KPAGVLMGHLE------------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 314 ~~~~~~~~~~~------------~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
..+..+..|.. .|.+++|+|++++|++++. +.|++||++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------------------- 317 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------------------- 317 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-------------------------
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-------------------------
Confidence 22677887776 8999999999999999999 999999998621
Q ss_pred ccccCCCCceEEEEccCceeEE---------EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--------
Q 010883 382 RDLKHPCDQSVATYKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------- 444 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------- 444 (498)
..+..+.+|..... .....+..+|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 318 --------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~ 388 (447)
T 3dw8_B 318 --------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKP 388 (447)
T ss_dssp --------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCT
T ss_pred --------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccc
Confidence 12222233321100 00001224678899999999999999999999988763 22
Q ss_pred -------------------------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 445 -------------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 445 -------------------------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
.+...|.+++|+|++++||+++.|+ +++|.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345688999999999999998876 777764
No 55
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.9e-37 Score=314.91 Aligned_cols=334 Identities=16% Similarity=0.172 Sum_probs=254.2
Q ss_pred CCCccccCCCCc-eEEEEEcC--CCCEEEEEECCCeEEEEECCCC------eEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883 122 NGPWPVDQTTSR-AYVSQFSA--DGSLFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLV 192 (498)
Q Consensus 122 ~~~~~l~~h~~~-v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 192 (498)
.....+.+|... |++++|+| ++++||+|+.||.|+|||+.++ .. ........|...|.+++|+|++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-NVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE-EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccc-cccchhhcccccEEEEEEeCCCCEEE
Confidence 455678899999 99999999 9999999999999999999754 11 12223345777999999999999999
Q ss_pred EEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 010883 193 YASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 193 ~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~ 267 (498)
+++.+ +.|++||. ++..... .+|...|.+++|+|+++ .+++++.|+.|++||+.+++
T Consensus 133 ~~~~~~~~~~~v~~~d~--~~~~~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 194 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDS--GNSLGEV----------------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 194 (615)
T ss_dssp EEECCSSCSEEEEETTT--CCEEEEC----------------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred EeccCCCCccEEEEEEC--CCcceee----------------ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence 99987 68888883 3322221 14677999999999998 89999999999999999999
Q ss_pred eeEEEeccCC---CeeEEEEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEe-c---cccccEEEEEEcCCCCEEE
Q 010883 268 LSLRILAHTS---DVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M---GHLEGITFIDSRGDGRYLI 339 (498)
Q Consensus 268 ~~~~~~~~~~---~v~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~l~ 339 (498)
.+..+..|.. .|.+++|+ ++ +++|++++.||.|++||++ .++.+..+ . .|...|.+++|+ ++++|+
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 195 FSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp EEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred eeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----CCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence 9999999999 99999998 66 9999999999999999998 77888888 5 899999999999 999999
Q ss_pred EEeCCCcEEEEeCCCCCCccccccCc-------------------------cccccc-----------------------
Q 010883 340 SNGKDQAIKLWDIRKMSSNASCNLGF-------------------------RSYEWD----------------------- 371 (498)
Q Consensus 340 s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~----------------------- 371 (498)
+++.|+.|++||+++........... ....|+
T Consensus 269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 348 (615)
T 1pgu_A 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN 348 (615)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETT
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEec
Confidence 99999999999998754332221110 000000
Q ss_pred --------------------------ceeecCCcCcccccCCCC------------------------------------
Q 010883 372 --------------------------YRWMDYPPQARDLKHPCD------------------------------------ 389 (498)
Q Consensus 372 --------------------------~~~~~~~~~~~~~~~~~~------------------------------------ 389 (498)
+..+.+++....+....+
T Consensus 349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred CcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 000111101111100011
Q ss_pred --------------------------------------ceEEEEccCceeE------EEEEEEeccccCCCCcEEEEEec
Q 010883 390 --------------------------------------QSVATYKGHSVLR------TLIRCHFSPVYSTGQKYIYTGSH 425 (498)
Q Consensus 390 --------------------------------------~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~g~~ 425 (498)
..+..+....... .......+++|+|++++|++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 1111111110000 00001233468899999999999
Q ss_pred CCeEEEEECCCCcEEEEecc-CCCCeeeeEEcC----------CCCeEEEEeCCCcEEEecCCCCC
Q 010883 426 DSCVYVYDLVSGEQVAALKY-HTSPVRDCSWHP----------SQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp----------~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
||.|++||+.+++.+..+.+ |...|++++|+| ++++|++++.||.|++|++....
T Consensus 509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence 99999999999999999988 999999999999 99999999999999999998864
No 56
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=291.37 Aligned_cols=258 Identities=16% Similarity=0.194 Sum_probs=210.8
Q ss_pred ecCCCce-eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883 171 LAKSLRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 171 ~~~~~~~-~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l 249 (498)
...+|.. .|.+++|+|++++|++++.|+.|+|||+.++........ ..+|...|.+++|+|++++|
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-------------SEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-------------CSSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-------------ccccCCcEEEEEECCCCCEE
Confidence 3456665 899999999999999999999999999987654322111 12577799999999999999
Q ss_pred EEEeCCCeEEEEECCCCe--eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883 250 VAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 327 (498)
++|+.|+.|++||+..+. .+..+.+|...|.+++|+ +++++|++|+.|++|++||++... ....+..+.+|...|.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVK 154 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEE
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeE
Confidence 999999999999998764 567788999999999998 789999999999999999997321 2245667889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 407 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (498)
+++|+|++++|++++.|+.|++||++... ......+.+|....
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~--------------------------------~~~~~~~~~h~~~v----- 197 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDD--------------------------------WVCCATLEGHESTV----- 197 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTE--------------------------------EEEEEEECCCSSCE-----
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCC--------------------------------EEEEEEecCCCCce-----
Confidence 99999999999999999999999987521 02345666666432
Q ss_pred EeccccCCCCcEEEEEecCCeEEEEECCCC---------------cEEEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883 408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---------------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDV 471 (498)
Q Consensus 408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------------~~~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i 471 (498)
.+++|+|++++|++|+.|+.|+|||.... +++..+.+ |...|.+++|+|++..|++++.|+.|
T Consensus 198 -~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 276 (345)
T 3fm0_A 198 -WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276 (345)
T ss_dssp -EEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred -EEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence 33467789999999999999999996321 33445554 88999999999999999999999999
Q ss_pred EEecCCCCCC
Q 010883 472 VRWEFPGNGE 481 (498)
Q Consensus 472 ~iw~~~~~~~ 481 (498)
++|+......
T Consensus 277 ~vw~~~~~~~ 286 (345)
T 3fm0_A 277 RVFQEDPNSD 286 (345)
T ss_dssp EEEEECTTSC
T ss_pred EEEEeCCCCC
Confidence 9999876543
No 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.7e-37 Score=300.36 Aligned_cols=285 Identities=26% Similarity=0.386 Sum_probs=233.1
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
.+|...|+|++| ++++|++|+.||.|++||+.+++.... ..+|...|.+++| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE---EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 467788999887 899999999999999999999865543 3578889999999 789999999999999999998
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EEEeccCCCeeEEEE
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCF 284 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~ 284 (498)
++...... +|...|.+++|++ ..+++|+.||.|++||+.+++.. ..+.+|...|.+++|
T Consensus 203 ~~~~~~~~----------------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 203 GEMLNTLI----------------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp CCEEEEEC----------------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred CcEEEEEc----------------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 87644332 4666899999974 58999999999999999987755 567789999999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
++++|++|+.||.|++||++ .+..+..+.+|...|.++.+ ++.++++|+.||.|++||+++
T Consensus 265 ---~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~---------- 325 (435)
T 1p22_A 265 ---DDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---------- 325 (435)
T ss_dssp ---ETTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT----------
T ss_pred ---CCCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC----------
Confidence 46799999999999999998 78889999999999999999 467999999999999999987
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc------
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE------ 438 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~------ 438 (498)
+..+..+.+|....... .+ ++.+|++|+.||.|++||+.+++
T Consensus 326 ------------------------~~~~~~~~~h~~~v~~~------~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 373 (435)
T 1p22_A 326 ------------------------GACLRVLEGHEELVRCI------RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA 373 (435)
T ss_dssp ------------------------CCEEEEECCCSSCEEEE------EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred ------------------------CCEEEEEeCCcCcEEEE------Ee--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence 35667777776433322 22 68899999999999999998776
Q ss_pred ---EEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCCCCccchhc
Q 010883 439 ---QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKR 490 (498)
Q Consensus 439 ---~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~ 490 (498)
.+..+.+|.+.|++++| ++.+|++++.||.|++||+.+............
T Consensus 374 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 426 (435)
T 1p22_A 374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSP 426 (435)
T ss_dssp TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---------------
T ss_pred cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCC
Confidence 88899999999999999 788999999999999999988765544443333
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-36 Score=297.55 Aligned_cols=285 Identities=21% Similarity=0.282 Sum_probs=241.8
Q ss_pred ccccCCCCce-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 125 WPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 125 ~~l~~h~~~v-~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
..+.+|...| .|+.| ++++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+|++ +|++++.||.|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4678898885 66666 578999999999999999999865543 35788899999999988 99999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCee-------------
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEANKL------------- 268 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~dg~i~vwd~~~~~~------------- 268 (498)
|+.+++...... +|...|.+++|+ +++.+|++|+.|+.|++||+.++..
T Consensus 189 d~~~~~~~~~~~----------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 189 DIKKGCCTHVFE----------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp ETTTTEEEEEEC----------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred ECCCCcEEEEEC----------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 999887654332 466799999998 5788999999999999999987653
Q ss_pred ----------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE
Q 010883 269 ----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 338 (498)
Q Consensus 269 ----------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 338 (498)
...+.+|...|.++. ++++++++|+.||.|++||++ ..+.+..+.+|...|.+++|+|++++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred eeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 445668888888885 457899999999999999998 788899999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883 339 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 418 (498)
Q Consensus 339 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 418 (498)
++++.|+.|++||+++ ++.+..+.+|....... .+ ++.
T Consensus 326 ~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~~~------~~--~~~ 363 (464)
T 3v7d_B 326 ISASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALVGLL------RL--SDK 363 (464)
T ss_dssp EEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCEEEE------EE--CSS
T ss_pred EEEeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCcEEEE------EE--cCC
Confidence 9999999999999987 46677777776543322 22 368
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
+|++++.||.|++||+.+++...... |...+..++|+|++++|++++ ||.|++||+.+++..
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 99999999999999999988776664 677888899999999999998 899999999887654
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.2e-38 Score=296.32 Aligned_cols=292 Identities=13% Similarity=0.109 Sum_probs=234.9
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEEEEEC
Q 010883 127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV 205 (498)
Q Consensus 127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~ 205 (498)
..+|.+.|++++|+|++++|++++.|+.|+||++.++...........|...|++++|+|+++ +|++++.|+.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 357999999999999999999999999999999988751111222336777999999999999 9999999999999999
Q ss_pred -CCCceeccccccccccCccccccCCCC--ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeeeEEEe
Q 010883 206 -GSGTMESLANVTEIHDGLDFSAADDGG--YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRIL 273 (498)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~---------~~~~~~~~ 273 (498)
.+++..... + |...|.+++|+| +.+|++++.|+.|++||+.+ ++++..+.
T Consensus 87 ~~~~~~~~~~-----------------~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 87 IGSPSFQALT-----------------NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SSSSSEEECB-----------------SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred ccCCceEecc-----------------ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 877542211 3 666899999999 99999999999999999987 66665554
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcc-ccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC-LNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd 351 (498)
|...|.+++|+ +++ +++++.|+.|++||++. . ..........|...|.+++|+| ++++|++++.||.|++|+
T Consensus 149 -~~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 149 -VKNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCE--DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp -SCCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCT--TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred -eCCceEEEEec-CCc--EEEEeCCCeEEEEECCccc--cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 88999999998 444 99999999999999973 2 1223345556888999999999 999999999999999999
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-------eEEEEEEEeccccCCCCcEEEEEe
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-------LRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
++....... ......+..|.. ...+. +.+|+|++++|++++
T Consensus 223 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 223 FDDQGDDYN----------------------------SSKRFAFRCHRLNLKDTNLAYPVN----SIEFSPRHKFLYTAG 270 (342)
T ss_dssp CCTTCCSTT----------------------------CTTCEEEECCCCCTTCCSSCCCEE----EEEECTTTCCEEEEE
T ss_pred EcCCCcccc----------------------------cccceeeecccccccccccceeEE----EEEEcCCCCEEEEec
Confidence 987410000 022333444432 11222 336677999999999
Q ss_pred cCCeEEEEECCCCcEEEEeccC-CCCeeeeEEcCCCCeEEEEeCCCc-EEEecC
Q 010883 425 HDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDGD-VVRWEF 476 (498)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~~~Dg~-i~iw~~ 476 (498)
.||.|++||+.+++.+..+.+| ..+|++++ |++++|++++.||. .+.|..
T Consensus 271 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 271 SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred CCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 9999999999999999999998 99999999 99999999999998 666665
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=314.77 Aligned_cols=294 Identities=11% Similarity=0.040 Sum_probs=218.7
Q ss_pred cccCCCCceEEEEEcCC------CCEEEEEECCCeEEEEECCCCeEE-----E---EEeecCCCceeEEEEEeCCCCCeE
Q 010883 126 PVDQTTSRAYVSQFSAD------GSLFVAGFQASQIRIYDVERGWKI-----Q---KDILAKSLRWTVTDTSLSPDQRHL 191 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~d------g~~la~~~~dg~i~vw~~~~~~~~-----~---~~~~~~~~~~~v~~~~~sp~~~~l 191 (498)
.+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... . ......+|...|++++|+|++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 35678899999999997 579999999999999999876311 0 011345677899999999864 89
Q ss_pred EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCee
Q 010883 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDG-RELVAGSSDDCIYVYDLEANKL 268 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~--~~s~~g-~~l~~g~~dg~i~vwd~~~~~~ 268 (498)
++|+.||+|++||+.++..... . ..+|...|.++ +|+|++ .+|++|+.|++|+|||+.+++.
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~-~--------------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSF-Y--------------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSE-E--------------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEeCCCEEEEEECCCCCCceE-E--------------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999999999986532110 0 01477799999 578888 8999999999999999999887
Q ss_pred eEEEeccCC--CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883 269 SLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 346 (498)
Q Consensus 269 ~~~~~~~~~--~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~ 346 (498)
...+.+|.. .|.+++|+ |++..|++++.|++|++||++ ....+..+.+|...|++++|+|++++|++|+.|++
T Consensus 346 ~~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp HCEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred ccccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence 777777754 58899998 778899999999999999998 66777788899999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 426 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 426 (498)
|++||+...... .+..... .......+..+|+|++..+. .. +
T Consensus 421 v~lwd~~~~~~~-----------------------------------~~~~~~~-~~~~~~v~~v~~sp~g~~~~-~~-~ 462 (524)
T 2j04_B 421 LIITNAARRLLH-----------------------------------GIKNSSA-TQKSLRLWKWDYSIKDDKYR-ID-S 462 (524)
T ss_dssp EECCBSCSSTTT-----------------------------------CC-------CCCCEEEECBCCSSSCEEE-EC-C
T ss_pred EEEEechHhhcc-----------------------------------ccccCcc-ceeeeEEEEeccCCCCCeEE-cc-C
Confidence 999998642100 0000000 00001234568888988552 22 2
Q ss_pred CeEEEEECC-CCcEEEEeccCCCCeeeeEEcCCCC---eEEEEeCCCcEEEecCCCC
Q 010883 427 SCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 427 g~i~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~---~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+.+|+.. ++..+..+.+|...|.+++|+|+++ +||+|+.||.|+||++...
T Consensus 463 -~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 463 -SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred -CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 23444433 5777888999999999999999965 9999999999999998764
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=291.55 Aligned_cols=306 Identities=13% Similarity=0.100 Sum_probs=238.1
Q ss_pred cCCCCCccccCCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883 119 LPVNGPWPVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 194 (498)
Q Consensus 119 ~~~~~~~~l~~h~~~v~~~~~s~d---g~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 194 (498)
.|......+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+.. ....|...|++++|+|++++|+++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEE
Confidence 355555678999999999999999 69999999999999999987 544433 234577799999999999999999
Q ss_pred ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeeeEEE
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEANKLSLRI 272 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 272 (498)
+.|+.|++||+.+++..... +|...|.+++| +|++++|++++.||.|++||+.+++.+..+
T Consensus 105 ~~dg~v~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQIA-----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp ETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred cCCCcEEEEEcCCCCceeec-----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 99999999999988765432 25568999999 899999999999999999999999988888
Q ss_pred eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCE----EEEEeCCCcE
Q 010883 273 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRY----LISNGKDQAI 347 (498)
Q Consensus 273 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~----l~s~~~dg~i 347 (498)
..+. .+.++.+. ...+++++.++.+++|+++.. ....... ..+...+.++.+.++... +++++.|+.|
T Consensus 168 ~~~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 168 QLPE-RCYCADVI---YPMAVVATAERGLIVYQLENQ---PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp ECSS-CEEEEEEE---TTEEEEEEGGGCEEEEECSSS---CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred ecCC-CceEEEec---CCeeEEEeCCCcEEEEEeccc---cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence 6654 67777775 347889999999999999722 1111221 223345566666554443 9999999999
Q ss_pred EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE------EEEEEEeccccCCCCcEEE
Q 010883 348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR------TLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~ 421 (498)
++||++..... ..+..+..|.... .......+.+|+|++++|+
T Consensus 241 ~i~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 289 (368)
T 3mmy_A 241 AIHYINPPNPA-------------------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289 (368)
T ss_dssp EEEESSCSCHH-------------------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred EEEecCCCCcc-------------------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence 99999874210 2233334433210 0000123446777999999
Q ss_pred EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+++.||.|++||+.+++++..+..|..+|++++|+|++++|++++.|+..+.|++...+.
T Consensus 290 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 290 TVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp EEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred EEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence 999999999999999999999999999999999999999999999999877777665443
No 62
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-36 Score=281.23 Aligned_cols=255 Identities=20% Similarity=0.261 Sum_probs=213.5
Q ss_pred EEEEeecCCCceeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC
Q 010883 166 IQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 244 (498)
Q Consensus 166 ~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~ 244 (498)
+.......+|.+.|++++|+|++ ++|++++.|++|++|++........... ....+|...|.+++|+|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-----------RSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE-----------EEEECCSSCEEEEEECT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc-----------eEEeCCcccEEEEEECC
Confidence 33444567899999999999965 8999999999999999864322110000 01125788999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883 245 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||++ +..+..+.+|..
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~h~~ 149 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-----GQCLATLLGHND 149 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-----SCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-----CCeEEEEeccCC
Confidence 99999999999999999999999999999999999999998 789999999999999999984 567788899999
Q ss_pred cEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883 325 GITFIDSRGD------GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 398 (498)
Q Consensus 325 ~v~~l~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
.|.++.+.|. +..|++++.|+.|++||++. .+....+.+|
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----------------------------------~~~~~~~~~h 195 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----------------------------------FQIEADFIGH 195 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCC
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc----------------------------------chhheeecCC
Confidence 9999999985 45899999999999999987 2455566666
Q ss_pred ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 399 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
..... +.+|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .+++|++..
T Consensus 196 ~~~v~------~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 196 NSNIN------TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp CSCEE------EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred CCcEE------EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 64322 236778999999999999999999999999998875 4689999999999999988765 599999875
Q ss_pred C
Q 010883 479 N 479 (498)
Q Consensus 479 ~ 479 (498)
.
T Consensus 268 ~ 268 (319)
T 3frx_A 268 Q 268 (319)
T ss_dssp E
T ss_pred C
Confidence 4
No 63
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-36 Score=290.69 Aligned_cols=252 Identities=23% Similarity=0.348 Sum_probs=209.8
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
+...|.+++|+|||++||+|+.|+.|+|||+.+++.+. ...+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 34469999999999999999999999999999885544 346788899999999999999999999999999999887
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEE-------eccCCCeeE
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI-------LAHTSDVNT 281 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~ 281 (498)
...... +...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+ .+|...|.+
T Consensus 199 ~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 199 CSLTLS-----------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp EEEEEE-----------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred eEEEEE-----------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 644332 223699999999 8999999999999999999999887766 578999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccC--------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
++|+ +++++|++|+.||.|++||++.... .......+.+|...|.+++|+|++.+|++++.|+.|++||++
T Consensus 262 v~~~-~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 262 VVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp EEEC-TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 9998 7899999999999999999973211 134456778899999999999999999999999999999998
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEE
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 433 (498)
+ +..+..+.+|..............++|++++|++|+.||.|+||+
T Consensus 341 ~----------------------------------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 341 S----------------------------------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp T----------------------------------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred C----------------------------------CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 7 356677788875443333332335778999999999999999999
Q ss_pred CCC
Q 010883 434 LVS 436 (498)
Q Consensus 434 ~~~ 436 (498)
+..
T Consensus 387 ~~~ 389 (393)
T 1erj_A 387 YKK 389 (393)
T ss_dssp EEE
T ss_pred ccc
Confidence 754
No 64
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.7e-36 Score=279.86 Aligned_cols=251 Identities=22% Similarity=0.343 Sum_probs=214.3
Q ss_pred eecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE
Q 010883 170 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 249 (498)
Q Consensus 170 ~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l 249 (498)
....+|...|++++|+|++++|++++.|+.|++|++.+++...... +|...|.+++|+|++++|
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------GHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEECTTSSEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc----------------cCCCceEEEEEcCCCCEE
Confidence 3456788899999999999999999999999999998876544322 466789999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 250 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++|+.||.|++||++ .++.+..+..|..+|.++
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCEEEEEecCCCCcEEEE
Confidence 999999999999999999999999999999999998 788999999999999999998 778888999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
+|+|++++|++++.|+.|++||+++. +.+..+..+.. ..+ .
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~----------------------------------~~~~~~~~~~~-~~~----~ 196 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASG----------------------------------QCLKTLIDDDN-PPV----S 196 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCSSC-CCE----E
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC----------------------------------ceeeEEeccCC-Cce----E
Confidence 99999999999999999999999873 22333322111 111 1
Q ss_pred ccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeee--EEc-CCCCeEEEEeCCCcEEEecCCCCC
Q 010883 410 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC--SWH-PSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~s-p~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
..+|+|++++|++++.||.|++||+.+++.+..+.+|...+..+ .++ +++.+|++++.||.|++||+....
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 23677899999999999999999999999999999887664433 343 678899999999999999998764
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.2e-38 Score=290.93 Aligned_cols=259 Identities=20% Similarity=0.174 Sum_probs=198.7
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 203 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iw 203 (498)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|...|.+++|+| ++++|++++.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 46789999999999999999999999999999999877432 1234467888999999986 48999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCee---eEEEeccCCC
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKL---SLRILAHTSD 278 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~ 278 (498)
|+.++........ .+|...|.+++|+|+ +.+|++|+.|+.|++||+..+.. ...+.+|...
T Consensus 87 d~~~~~~~~~~~~--------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 87 REENGTWEKSHEH--------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CCSSSCCCEEEEE--------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred ECCCCcceEEEEc--------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 9987643222111 247778999999997 78999999999999999987632 2344579999
Q ss_pred eeEEEEeCCC----------------CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC----CEE
Q 010883 279 VNTVCFGDES----------------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYL 338 (498)
Q Consensus 279 v~~~~~~~~~----------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----~~l 338 (498)
|.+++|+|.. +.+|++|+.|+.|++||++... ....+..+.+|...|.+++|+|++ .+|
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 9999998431 4689999999999999986110 114667788999999999999986 788
Q ss_pred EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883 339 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 418 (498)
Q Consensus 339 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 418 (498)
++++.|++|++||++.... +.
T Consensus 232 as~s~D~~v~iw~~~~~~~-----------------------------------------------------------~~ 252 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASS-----------------------------------------------------------NT 252 (316)
T ss_dssp EEEETTCEEEEEECSSTTC-----------------------------------------------------------CC
T ss_pred EEEcCCCeEEEEEccCccc-----------------------------------------------------------cc
Confidence 8888899999998765110 00
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 419 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.....+..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 253 -------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 253 -------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp -------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred -------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 00011234677888899999988899999999999998753
No 66
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-35 Score=291.25 Aligned_cols=283 Identities=20% Similarity=0.360 Sum_probs=241.1
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 123 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+ +++|++++.|+.|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 44678899988643 3555799999999999999999999865543 45788899999997 679999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
||+.+++...... +|...|.++.|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus 184 wd~~~~~~~~~~~----------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 184 WNAETGECIHTLY----------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EECCcCcEEEEEC----------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 9999887654332 466789999996 5689999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
+| ++.++++|+.||.|++||++ .+..+..+.+|...|.++.| ++.++++++.|+.|++||+++
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------- 308 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------- 308 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------
T ss_pred EE---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------
Confidence 99 46789999999999999998 77888999999999999999 788999999999999999987
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
++.+..+.+|....... ++++++|++|+.||.|++||+.+++.+..
T Consensus 309 --------------------------~~~~~~~~~~~~~v~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 309 --------------------------GNCIHTLTGHQSLTSGM--------ELKDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp --------------------------CCEEEEECCCCSCEEEE--------EEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --------------------------CCEEEEEcCCcccEEEE--------EEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 35566666665433221 22578999999999999999999999999
Q ss_pred ecc---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 443 LKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 443 ~~~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
+.. |...|++++|+ +++|++++.||.|++||+.++...
T Consensus 355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 986 88999999995 579999999999999999877543
No 67
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.9e-36 Score=283.18 Aligned_cols=248 Identities=21% Similarity=0.297 Sum_probs=212.7
Q ss_pred cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~ 251 (498)
..+|...|++++|+|++++|++++.|++|++||..+++...... .|...|.+++|+|+|.+|++
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~----------------~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT----------------MPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CSSSCCCEEEECTTSSEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe----------------cCCCCEEEEEECCCCCEEEE
Confidence 35788899999999999999999999999999998876544332 23447999999999999999
Q ss_pred EeCCCeEEEEECCCC------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883 252 GSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 325 (498)
Q Consensus 252 g~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 325 (498)
|+.|+.+++|++... .....+..|...|.+++|+ +++..|++++.|++|++||++ .++.+..+.+|...
T Consensus 124 g~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~----~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVE----SGQLLQSFHGHGAD 198 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSC
T ss_pred eeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCC----CCeEEEEEcCCCCC
Confidence 999999999998653 2445677899999999997 778899999999999999998 78889999999999
Q ss_pred EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 326 ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 326 v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
|.+++++| ++++|++++.|+.|++||+++ ++.+..+.+|.....
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~----------------------------------~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----------------------------------GQCVQAFETHESDVN 244 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTT----------------------------------CCEEEEECCCSSCEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCC----------------------------------CcEEEEecCCCCCeE
Confidence 99999987 578999999999999999987 356667777764322
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC--CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+.+|+|++.+|++|+.|+.|++||+.+++.+..+..+ ...+.+++|+|++++|++++.|+.|++||+..+.
T Consensus 245 ------~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 245 ------SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp ------EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred ------EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 2356779999999999999999999998887777543 3578999999999999999999999999997654
No 68
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-37 Score=296.93 Aligned_cols=251 Identities=19% Similarity=0.328 Sum_probs=212.2
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
...+|.+.|++++|+|++++|++|+.|++|+|||+.+++...... +|...|.+++|+|+|++|+
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~----------------~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK----------------LHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE----------------CCCTTCCCCEECTTSSEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe----------------cCCCCEEEEEECCCCCEEE
Confidence 346888999999999999999999999999999998887654332 3556899999999999999
Q ss_pred EEeCCCeEEEEECCCCe-------eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe----
Q 010883 251 AGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---- 319 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---- 319 (498)
+|+.|+.|++||+.+.. ....+.+|.+.|.++.|.|.++..|++|+.|++|++||++ .+..+..+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~~~ 200 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT----TGQRISIFGSEF 200 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT----TCCEEEEECCCS
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC----CCcEEEEeeccc
Confidence 99999999999997532 2345678999999999997677889999999999999998 66776666
Q ss_pred -ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883 320 -MGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397 (498)
Q Consensus 320 -~~~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
.+|...|.+++|++ ++.+|++|+.|+.|++||++... ..+..+.+
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---------------------------------~~~~~~~~ 247 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---------------------------------RAVRTYHG 247 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---------------------------------CCCEEECC
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---------------------------------cceEEECC
Confidence 67899999999987 88999999999999999997521 44556666
Q ss_pred CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC-------CCeeeeEEcCCCCeEEEEeCCCc
Q 010883 398 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGD 470 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~l~s~~~Dg~ 470 (498)
|..... +.+|+|++++|++|+.||+|++||+.+++.+..+..+. ..|++++|+|++++|++|+.||.
T Consensus 248 h~~~v~------~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 248 HEGDIN------SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp CSSCCC------EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred cCCCeE------EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 664322 23677799999999999999999999999988876543 24899999999999999999999
Q ss_pred EEEecCCCCC
Q 010883 471 VVRWEFPGNG 480 (498)
Q Consensus 471 i~iw~~~~~~ 480 (498)
|++||+..++
T Consensus 322 i~vwd~~~~~ 331 (380)
T 3iz6_a 322 CYVWDTLLAE 331 (380)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999987654
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-35 Score=289.81 Aligned_cols=294 Identities=21% Similarity=0.327 Sum_probs=246.3
Q ss_pred ccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE
Q 010883 112 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 191 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 191 (498)
...+++....+....+.+|...|++++|+ +++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+ ++.|
T Consensus 140 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l 212 (445)
T 2ovr_B 140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGHTSTVRCMHLH--EKRV 212 (445)
T ss_dssp CEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEE--TTEE
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCCCCcEEEEEec--CCEE
Confidence 33444444445556778999999999997 67999999999999999999865543 35777899999994 6789
Q ss_pred EEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 010883 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 271 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~ 271 (498)
++++.|+.|++||+.+++...... +|...|.+++| +++++++|+.||.|++||+.+++.+..
T Consensus 213 ~s~s~dg~i~~wd~~~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 274 (445)
T 2ovr_B 213 VSGSRDATLRVWDIETGQCLHVLM----------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 274 (445)
T ss_dssp EEEETTSEEEEEESSSCCEEEEEE----------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE
T ss_pred EEEeCCCEEEEEECCCCcEEEEEc----------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence 999999999999999877644332 46668999999 788999999999999999999999999
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
+.+|...|.+++| ++.++++++.||.|++||++ .++.+..+.+|...+.++.++ +++|++++.||.|++||
T Consensus 275 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 275 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWD 345 (445)
T ss_dssp ECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEE
Confidence 9999999999999 57899999999999999998 788889999999999998884 56999999999999999
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-eeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
+++. +.+..+..+. ....+..+. + ++++|++|+.||.|+
T Consensus 346 ~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~----~--~~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 346 IKTG----------------------------------QCLQTLQGPNKHQSAVTCLQ----F--NKNFVITSSDDGTVK 385 (445)
T ss_dssp TTTC----------------------------------CEEEEECSTTSCSSCEEEEE----E--CSSEEEEEETTSEEE
T ss_pred CCCC----------------------------------cEEEEEccCCCCCCCEEEEE----E--CCCEEEEEeCCCeEE
Confidence 9873 4555555422 111222222 2 468999999999999
Q ss_pred EEECCCCcEEEEe-----ccCCCCeeeeEEcCCCCeEEEEeCCCc----EEEecCCCC
Q 010883 431 VYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQPMLVSSSWDGD----VVRWEFPGN 479 (498)
Q Consensus 431 iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~l~s~~~Dg~----i~iw~~~~~ 479 (498)
+||+.+++.+..+ ..|.+.|++++|+|++.+|++++.||+ |.+||+...
T Consensus 386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999998888 478899999999999999999999998 999999865
No 70
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=282.14 Aligned_cols=254 Identities=20% Similarity=0.232 Sum_probs=201.3
Q ss_pred cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE
Q 010883 172 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 251 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~ 251 (498)
..+|...|.+++|+|+ +|++++.|+.|++|++..+......... ..+|...|.+++|+|++++|++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------------~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------------ETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC------------TTCCCSCEEEEEECTTSSEEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------------cCCccCCEEEEEECCCCCEEEE
Confidence 4578889999999988 9999999999999999875321111110 1137779999999999999999
Q ss_pred EeCCCeEEEEECCC-------CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883 252 GSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 252 g~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
|+.|+.|++||+.. .+.+..+.+|...|.+++|+ +++++|++|+.|++|++||++........+..+.+|..
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 99999999999853 34567788999999999998 78999999999999999999532223456778899999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE
Q 010883 325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 404 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (498)
.|.+++|+|++.+|++++.|+.|++||+.... ...+..+.+|.....
T Consensus 155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--------------------------------~~~~~~~~~h~~~v~- 201 (330)
T 2hes_X 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--------------------------------WECVAVLNGHEGTVW- 201 (330)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------EEEEEEECCCSSCEE-
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------------eeEEEEccCCCCcEE-
Confidence 99999999999999999999999999986521 145667777764322
Q ss_pred EEEEeccccCCC--CcEEEEEecCCeEEEEECCCC--------cEEEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883 405 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSG--------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 405 ~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
+.+|+|+ +.+|++|+.|+.|++||+..+ .....+.. |...|.+++|++++ +|++++.||.|++
T Consensus 202 -----~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i 275 (330)
T 2hes_X 202 -----SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV 275 (330)
T ss_dssp -----EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE
T ss_pred -----EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE
Confidence 2345666 779999999999999998765 34555654 89999999999765 8999999999999
Q ss_pred ecCCCC
Q 010883 474 WEFPGN 479 (498)
Q Consensus 474 w~~~~~ 479 (498)
|+...+
T Consensus 276 w~~~~~ 281 (330)
T 2hes_X 276 YEEVDG 281 (330)
T ss_dssp EEEETT
T ss_pred EEcCCC
Confidence 998654
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.8e-37 Score=336.33 Aligned_cols=362 Identities=18% Similarity=0.205 Sum_probs=277.4
Q ss_pred cccccccCCCCCccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCe
Q 010883 113 HMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 190 (498)
Q Consensus 113 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 190 (498)
..+++.........+.+|...|.+++|+| ++.++++|+.|+.|++||+.++..... ..+|...|++++|+|++++
T Consensus 681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~h~~~v~~~~~sp~~~~ 757 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT---MFGHTNSVNHCRFSPDDEL 757 (1249)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE---ECCCSSCEEEEEECSSTTE
T ss_pred EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe---ecCCCCCEEEEEEecCCCE
Confidence 34444444455567789999999999999 556999999999999999999865553 3478889999999999999
Q ss_pred EEEEECCCeEEEEECCCCceecccccccc--------------ccCcccccc-------------------------CCC
Q 010883 191 LVYASMSPIVHIVDVGSGTMESLANVTEI--------------HDGLDFSAA-------------------------DDG 231 (498)
Q Consensus 191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~-------------------------~~~ 231 (498)
|++++.||.|++||+.+++.......... ...+.+.+. ...
T Consensus 758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~ 837 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837 (1249)
T ss_dssp EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence 99999999999999988765433321110 001111111 012
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-
Q 010883 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN- 310 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~- 310 (498)
+|...|.+++|+|+++++++++.+|.|++||+.++..+..+.+|...|.+++|+ +++.+|++++.||.|++||+....
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-CCCCEEEEEeCCCeEEEEEccccce
Confidence 677899999999999999999999999999999999999999999999999998 788999999999999999854100
Q ss_pred --------------------------------------------------------------------------CCCcee
Q 010883 311 --------------------------------------------------------------------------VKGKPA 316 (498)
Q Consensus 311 --------------------------------------------------------------------------~~~~~~ 316 (498)
..+...
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 022344
Q ss_pred EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc
Q 010883 317 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 396 (498)
Q Consensus 317 ~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (498)
..+.+|...|++++|+|++++|++++.||.|++||+.+...... ......+..+.+.++...+....+..+..+.
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL-----QAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC-----BCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE-----ecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 55667889999999999999999999999999999987543321 1222233344444454444444444555444
Q ss_pred cCcee--EEE---EEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883 397 GHSVL--RTL---IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 471 (498)
Q Consensus 397 ~~~~~--~~~---~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i 471 (498)
..... ... .....+.+|+|++++|++++.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.||.|
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 32110 000 0112345688899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCC
Q 010883 472 VRWEFPGNGEAA 483 (498)
Q Consensus 472 ~iw~~~~~~~~~ 483 (498)
++||+.++....
T Consensus 1152 ~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A 1152 RIWNVSDGQLLH 1163 (1249)
T ss_dssp CEEESSSSCCCC
T ss_pred EEEECCCCceEE
Confidence 999999876543
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.2e-36 Score=305.63 Aligned_cols=308 Identities=15% Similarity=0.151 Sum_probs=238.7
Q ss_pred cccccCCCCCccccCCCC---ceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEE-eecCCCceeEEEEEeCCCCC
Q 010883 115 LSRYLPVNGPWPVDQTTS---RAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQR 189 (498)
Q Consensus 115 ~~~~~~~~~~~~l~~h~~---~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~ 189 (498)
+++....+....+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+... .....|...|.+++|+ +++
T Consensus 187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 265 (615)
T 1pgu_A 187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ 265 (615)
T ss_dssp EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS
T ss_pred EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC
Confidence 334333344456778999 9999999999 999999999999999999998665543 1111677899999999 999
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 269 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 269 (498)
+|++++.|+.|++||+.+++......... ..+...+.++.|. ++.++++++.+|.|++||+.+++.+
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~ 332 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL 332 (615)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCT------------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCC------------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence 99999999999999999887655443321 1233468888886 8899999999999999999998888
Q ss_pred EEEeccCCCeeEEEEeCC--------------------------------CCCEEEEeeCCCeEEEEcCccccC------
Q 010883 270 LRILAHTSDVNTVCFGDE--------------------------------SGHLIYSGSDDNLCKVWDRRCLNV------ 311 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~--------------------------------~~~~l~s~s~dg~i~vwd~~~~~~------ 311 (498)
..+..|...|.+++| |. ++..|++++.|+.|++||+.....
T Consensus 333 ~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 411 (615)
T 1pgu_A 333 KTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKV 411 (615)
T ss_dssp EEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEE
T ss_pred EEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceE
Confidence 887777666666655 21 244555666666666665432100
Q ss_pred ----------------------------------------------------------------CCcee-EEeccccccE
Q 010883 312 ----------------------------------------------------------------KGKPA-GVLMGHLEGI 326 (498)
Q Consensus 312 ----------------------------------------------------------------~~~~~-~~~~~~~~~v 326 (498)
..... ..+..|...|
T Consensus 412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp EEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence 11111 4556788999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEE
Q 010883 327 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLI 405 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 405 (498)
++++|+|++++|++++.|+.|++||+.+. +.+..+.+ |....
T Consensus 492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~----------------------------------~~~~~~~~~h~~~v--- 534 (615)
T 1pgu_A 492 SYISISPSETYIAAGDVMGKILLYDLQSR----------------------------------EVKTSRWAFRTSKI--- 534 (615)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTT----------------------------------EEEECCSCCCSSCE---
T ss_pred EEEEECCCCCEEEEcCCCCeEEEeeCCCC----------------------------------cceeEeecCCCCce---
Confidence 99999999999999999999999999873 34444444 44222
Q ss_pred EEEeccccCC----------CCcEEEEEecCCeEEEEECCCC-cEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEe
Q 010883 406 RCHFSPVYST----------GQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 406 ~~~~~~~~s~----------~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw 474 (498)
.+.+|+| ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|
T Consensus 535 ---~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 535 ---NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 610 (615)
T ss_dssp ---EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred ---eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence 2336777 8999999999999999999998 78899999999999999999999 9999999999999
Q ss_pred cCCC
Q 010883 475 EFPG 478 (498)
Q Consensus 475 ~~~~ 478 (498)
++..
T Consensus 611 ~~~~ 614 (615)
T 1pgu_A 611 NVVL 614 (615)
T ss_dssp EEC-
T ss_pred eeec
Confidence 9874
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=311.43 Aligned_cols=208 Identities=13% Similarity=0.137 Sum_probs=161.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
.|..+|.+++|+| |++||+++.|++|+|||+.+++.+.... |...|++++|+|++++|++|+.||.|++||+.++
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 4788999999999 8899999999999999999987665542 4458999999999999999999999999999987
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEecc------------
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH------------ 275 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~------------ 275 (498)
+.... ....... ......+|..+|.+++|+|+ +..|++|+.||.| +||+.+++.+..+..|
T Consensus 131 ~~~~~-~i~~~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 131 QLSSF-KLDNLQK----SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEEEE-EECCHHH----HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred ccccc-eeccccc----cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 65311 1100000 00112468889999999996 5789999999999 9999999988887655
Q ss_pred ------CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE--e---c-------------cccccEEEEEE
Q 010883 276 ------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L---M-------------GHLEGITFIDS 331 (498)
Q Consensus 276 ------~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~---~-------------~~~~~v~~l~~ 331 (498)
...|++++|+ +++.+|++|+.||.|++||++ .++++.. + . .|...|++++|
T Consensus 205 ~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~----~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDAN----SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp CTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETT----TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred ccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECC----CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 4779999998 789999999999999999997 5555432 2 1 13457999999
Q ss_pred c----CCC-CEEEEEeCC-----CcEEEEeC
Q 010883 332 R----GDG-RYLISNGKD-----QAIKLWDI 352 (498)
Q Consensus 332 ~----~~~-~~l~s~~~d-----g~i~iwd~ 352 (498)
+ |++ .+|++|+.| ..+.+|++
T Consensus 280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 280 MCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 5 443 456666555 26777774
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.1e-35 Score=289.42 Aligned_cols=309 Identities=17% Similarity=0.266 Sum_probs=240.6
Q ss_pred cccccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeC--CCC
Q 010883 111 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQ 188 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~ 188 (498)
....+++....+....+.+|.+.|++++|+|++ +|++|+.||+|++||+.++..+.. ..+|...|.+++|+ +++
T Consensus 142 g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~ 217 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVEYKNI 217 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEEESSSC
T ss_pred CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCCccEEEEEecCCCC
Confidence 344445544555556778999999999999998 999999999999999999865543 35678899999998 578
Q ss_pred CeEEEEECCCeEEEEECCCCceecccccccccc-------CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883 189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHD-------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 261 (498)
Q Consensus 189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw 261 (498)
++|++++.|+.|++||+.++............. ...+......+|...|.++ ++++++|++|+.||.|++|
T Consensus 218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW 295 (464)
T ss_dssp EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEE
T ss_pred CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEE
Confidence 999999999999999998776432221110000 0000111223577788877 5678899999999999999
Q ss_pred ECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883 262 DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 262 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 341 (498)
|+.+++.+..+.+|...|.+++|+ +++++|++|+.||.|++||++ .++.+..+.+|...|.++.|+ +.+|+++
T Consensus 296 d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 296 DVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred ECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 999999999999999999999998 788999999999999999998 788999999999999999997 5799999
Q ss_pred eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883 342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 421 (498)
+.||.|++||+++.. ...... +...... .++++++++|+
T Consensus 369 s~dg~v~vwd~~~~~----------------------------------~~~~~~-~~~~~~~------~~~~~~~~~l~ 407 (464)
T 3v7d_B 369 AADGSIRGWDANDYS----------------------------------RKFSYH-HTNLSAI------TTFYVSDNILV 407 (464)
T ss_dssp ETTSEEEEEETTTCC----------------------------------EEEEEE-CTTCCCE------EEEEECSSEEE
T ss_pred eCCCcEEEEECCCCc----------------------------------eeeeec-CCCCccE------EEEEeCCCEEE
Confidence 999999999998732 122221 1111111 14566899999
Q ss_pred EEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 422 TGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 422 ~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
+|+ ||.|++||+.+++.+.. +..|...|++++|+ ...++++++.||.+.+|-
T Consensus 408 ~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 408 SGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred Eec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 998 89999999999999986 56889999999997 344666667777666553
No 75
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.8e-35 Score=274.55 Aligned_cols=254 Identities=19% Similarity=0.210 Sum_probs=203.5
Q ss_pred eecCCCceeEEEEEe-----CC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc
Q 010883 170 ILAKSLRWTVTDTSL-----SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 243 (498)
Q Consensus 170 ~~~~~~~~~v~~~~~-----sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 243 (498)
....+|...|++++| ++ ++++|++|+.|++|++||+.+.+....... ......+|...|.+++|+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~---------~~~~l~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGI---------PHKALTGHNHFVSDLALS 85 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEE---------EEEEECCCSSCEEEEEEC
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccccc---------ccchhccCCCceEEEEEC
Confidence 345688899999999 77 999999999999999999876542111100 001123688899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe---c
Q 010883 244 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---M 320 (498)
Q Consensus 244 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~ 320 (498)
|++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++++.|+.|++||+. . ...... .
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~----~-~~~~~~~~~~ 159 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNIL----G-ECKFSSAEKE 159 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESS----S-CEEEECCTTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEecc----C-Cceeeeeccc
Confidence 999999999999999999999999999999999999999998 789999999999999999985 2 222222 3
Q ss_pred cccccEEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883 321 GHLEGITFIDSRGDG----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 321 ~~~~~v~~l~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
.|...|.+++|+|++ .+|++++.|+.|++||... +
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------------------------------~ 204 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----------------------------------Q 204 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----------------------------------E
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----------------------------------c
Confidence 688899999999987 7999999999999999543 4
Q ss_pred eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
....+.+|.... .+.+|+|+|++|++|+.||.|++||+.. ......+. +...|.+++|+|++++|+++ .|+
T Consensus 205 ~~~~~~~h~~~v------~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~ 276 (343)
T 2xzm_R 205 IRYTFKAHESNV------NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQ 276 (343)
T ss_dssp EEEEEECCSSCE------EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESS
T ss_pred eeEEEcCccccc------eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCC
Confidence 455666666332 2336778999999999999999999944 44444443 55679999999999877655 588
Q ss_pred cEEEecCCCCCC
Q 010883 470 DVVRWEFPGNGE 481 (498)
Q Consensus 470 ~i~iw~~~~~~~ 481 (498)
.|++|++.....
T Consensus 277 ~v~iw~~~~~~~ 288 (343)
T 2xzm_R 277 GVKIFNLMTQSK 288 (343)
T ss_dssp CEEEEESSSCCS
T ss_pred CEEEEEeCCCCC
Confidence 899999987654
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-35 Score=312.94 Aligned_cols=220 Identities=17% Similarity=0.267 Sum_probs=188.8
Q ss_pred ccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883 116 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 195 (498)
Q Consensus 116 ~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s 195 (498)
++.-.......+.+|..+|.+++|+|+|++||+|+.||.|+|||+.++..+... ..|...|++++|+|++++|++++
T Consensus 40 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 40 WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEE
T ss_pred EECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCEEEEEEeCCCCEEEEEc
Confidence 333333344567889999999999999999999999999999999998665543 46777999999999999999999
Q ss_pred CCCeEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883 196 MSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 196 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 273 (498)
.|+.|++||+.++. ...... +|...|.+++|+| ++..|++++.||.|++||+.+++....+.
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~----------------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFE----------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEE----------------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred CCCEEEEEECCCCceEEEEEc----------------CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 99999999998762 222211 4666899999999 88999999999999999999888877776
Q ss_pred ccC-CCeeEEEEeC-CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 274 AHT-SDVNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 274 ~~~-~~v~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
.+. ..+.+++|+| +++.+|++++.||.|++||++ .+..+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 555 8999999984 288999999999999999998 7788889999999999999999999999999999999999
Q ss_pred CCCCCCc
Q 010883 352 IRKMSSN 358 (498)
Q Consensus 352 ~~~~~~~ 358 (498)
+.+....
T Consensus 257 ~~~~~~~ 263 (814)
T 3mkq_A 257 SSTYKVE 263 (814)
T ss_dssp TTTCSEE
T ss_pred CCCCcEE
Confidence 9875543
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-36 Score=291.67 Aligned_cols=281 Identities=14% Similarity=0.190 Sum_probs=223.7
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCC---Cceecc
Q 010883 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS---GTMESL 213 (498)
Q Consensus 138 ~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~---~~~~~~ 213 (498)
.|+|+++.+++++ .|+.. +..+.. ...+|...|++++|+| ++++|++|+.|+.|+|||+.+ +.....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~~--~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIAT--LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEEE--ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------ccccc-ceEEee--eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 3788888888765 38754 434433 2367888999999999 999999999999999999876 321110
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeeeEEEec------------cCCC
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRILA------------HTSD 278 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~---~~~~~~~~~~------------~~~~ 278 (498)
. .. .+|...|.+++|+|++++|++|+.||.|++||+. +++....+.. +...
T Consensus 105 ~-~~-------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 170 (437)
T 3gre_A 105 S-LT-------------YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170 (437)
T ss_dssp S-EE-------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred e-ee-------------ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccC
Confidence 0 00 0356689999999999999999999999999995 4544433322 4456
Q ss_pred eeEEEEe-CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 279 VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 279 v~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
+.++.+. .+++.+|++|+.||.|++||++ ..+.+..+.. |...|++++|+|++++|++++.||.|++||++.
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~- 245 (437)
T 3gre_A 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF- 245 (437)
T ss_dssp EEEEEEEECSSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-
T ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-
Confidence 6666632 2678899999999999999998 7888888887 899999999999999999999999999999987
Q ss_pred CCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883 356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 434 (498)
+..+..+. .+. ..+..+.+++.|++++.+|++|+.||.|++||+
T Consensus 246 ---------------------------------~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 246 ---------------------------------NVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp ---------------------------------TEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred ---------------------------------ccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 34555554 343 356677788999999999999999999999999
Q ss_pred CCCcEEEEeccC--------------------------CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 435 VSGEQVAALKYH--------------------------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 435 ~~~~~~~~~~~h--------------------------~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.+++.+..+.+| ...|++++|+ ++++|++++.||.|++||+..+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 999988877654 4457778888 6789999999999999999877543
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=276.44 Aligned_cols=264 Identities=17% Similarity=0.151 Sum_probs=210.1
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 201 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~ 201 (498)
...+.+|...|++++|+|++++||+|+.||.|+||++..+.. ........|...|++++|+|+ +++|++++.|+.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456789999999999999999999999999999999985422 223345678889999999987 99999999999999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCC
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTS 277 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~ 277 (498)
+||+.+++........ +|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+..|..
T Consensus 83 iwd~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHA--------------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp EEEEETTEEEEEEEEC--------------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred EEEcCCCceeEeeeec--------------CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence 9999987632222211 35668999999999 9999999999999999998873 3455678999
Q ss_pred CeeEEEEeCC------------CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---CCEEEEEe
Q 010883 278 DVNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNG 342 (498)
Q Consensus 278 ~v~~~~~~~~------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~ 342 (498)
.|.+++|+|. ++.+|++++.||.|++||++...........+.+|...|.+++|+|+ +.+|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 9999999853 68999999999999999997433233456778889999999999999 89999999
Q ss_pred CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
.||.|++||++...... ....+........+ .+++|+|++++|++
T Consensus 229 ~dg~i~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~~v----~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPW-------------------------------KKTLLKEEKFPDVL----WRASWSLSGNVLAL 273 (379)
T ss_dssp TTSCEEEEEESSTTSCC-------------------------------EEEESSSSCCSSCE----EEEEECSSSCCEEE
T ss_pred CCCEEEEEeCCCCCccc-------------------------------eeeeeccccCCCcE----EEEEEcCCCCEEEE
Confidence 99999999998743211 11111111111122 33467779999999
Q ss_pred EecCCeEEEEECCCC
Q 010883 423 GSHDSCVYVYDLVSG 437 (498)
Q Consensus 423 g~~dg~i~iwd~~~~ 437 (498)
++.||.|++||+..+
T Consensus 274 ~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 274 SGGDNKVTLWKENLE 288 (379)
T ss_dssp EESSSSEEEEEEEET
T ss_pred ecCCCcEEEEeCCCC
Confidence 999999999998754
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=281.46 Aligned_cols=311 Identities=15% Similarity=0.104 Sum_probs=224.6
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEeec-----------------------------------
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILA----------------------------------- 172 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~---~~~~~~~~----------------------------------- 172 (498)
..++.+++|+|||++|+++ .++.|++||+.+++ .+......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 57799999999887 33322110
Q ss_pred ----------------CCCceeEEEEEeCCCCCeE-EEEECCCeEEEEECC--CCceeccccccccccCccccccCCCCc
Q 010883 173 ----------------KSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGY 233 (498)
Q Consensus 173 ----------------~~~~~~v~~~~~sp~~~~l-~~~s~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h 233 (498)
..|...|.+++|+|++++| ++++.|+.|++||+. +++........ .|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~ 148 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CF 148 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------EC
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cC
Confidence 1233469999999999996 888899999999998 66654443211 23
Q ss_pred eecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EEeccCCCeeEEEEeCCC---CCEEEEeeCCCeEEEEcC
Q 010883 234 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDR 306 (498)
Q Consensus 234 ~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~vwd~ 306 (498)
...|.+++|+|++++|++|+.+|.|++|++.+++... .+.+|...|.+++|+ ++ +.+|++|+.|+.|++||+
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEEC
Confidence 4479999999999999999999999999998877544 677899999999998 66 889999999999999999
Q ss_pred ccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883 307 RCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 385 (498)
Q Consensus 307 ~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (498)
+ .+..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++............ ...+......
T Consensus 228 ~----~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~---- 293 (450)
T 2vdu_B 228 P----QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL-----IKPYLNDQHL---- 293 (450)
T ss_dssp S----CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH-----HGGGCCTTSB----
T ss_pred C----CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh-----hhhhhhhccc----
Confidence 7 6666666 56899999999999 999999999999999999988543222111000 0000000000
Q ss_pred CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEEC--CCC---cEEEEeccCCCCeeeeEEcCCC
Q 010883 386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL--VSG---EQVAALKYHTSPVRDCSWHPSQ 459 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~l~~sp~~ 459 (498)
+ ......-........+ ..+.++|++++|++++ .++.|++|++ .++ +.+..+..| +.|.+++|+|++
T Consensus 294 -~-~~~~~~~~~~~~~~~v----~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 294 -A-PPRFQNENNDIIEFAV----SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp -C-----------CBCCCE----EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred -c-cccccccccccceEEE----EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 0 0000000000000112 2235667999999999 8999999999 565 677778877 889999999964
Q ss_pred CeEEEEeC-------CCcEEEecCCCC
Q 010883 460 PMLVSSSW-------DGDVVRWEFPGN 479 (498)
Q Consensus 460 ~~l~s~~~-------Dg~i~iw~~~~~ 479 (498)
++++++. +..|.+|.+...
T Consensus 367 -~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 367 -FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp -EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred -EEEEEecccCCCCCCcceEEEEEEcC
Confidence 4554432 556899987654
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-35 Score=286.11 Aligned_cols=294 Identities=14% Similarity=0.213 Sum_probs=229.2
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCc
Q 010883 133 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 133 ~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
....++++|+...++ +++.||.|+||++...... .......+|...|++++|+| ++++|++++.|+.|++|++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 445688999875444 5788999999999765332 12233567889999999999 99999999999999999998874
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE--eccCCCeeEEEEeC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGD 286 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~ 286 (498)
........ .....+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+ ..|...|.+++|+
T Consensus 116 ~~~~~~~~---------~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~- 185 (402)
T 2aq5_A 116 LVLPLREP---------VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS- 185 (402)
T ss_dssp CSSCBCSC---------SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC-
T ss_pred CccccCCc---------eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC-
Confidence 32111000 00112577799999999998 69999999999999999999999888 7899999999998
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-cccccc-EEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCCCcccc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEG-ITFIDSRGDGRYLISN---GKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~ 361 (498)
+++.+|++++.||.|++||++ .+..+..+ ..|... +.++.|+|++++|+++ +.|+.|++||+++.....
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-- 259 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-- 259 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS--
T ss_pred CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc--
Confidence 689999999999999999998 77788887 678776 8999999999999999 789999999998743211
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE-EecCCeEEEEECCCCcE-
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVSGEQ- 439 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~~~~- 439 (498)
....+.... .+ ..++|+|++++|++ |+.||.|++||+.+++.
T Consensus 260 -----------------------------~~~~~~~~~---~v----~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 260 -----------------------------SLQELDTSS---GV----LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp -----------------------------EEEECCCCS---SC----EEEEEETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred -----------------------------eEEeccCCC---ce----eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 011111111 11 22366779998875 55799999999999873
Q ss_pred EEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 440 VAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 440 ~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+..+.. |..+|.+++|+|++.++++ .|+.+++|++..+.
T Consensus 304 ~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 304 LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 444443 5689999999999998875 56799999997653
No 81
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=296.99 Aligned_cols=270 Identities=12% Similarity=0.035 Sum_probs=199.8
Q ss_pred CCCCceEEEEEcCCC---------CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 129 QTTSRAYVSQFSADG---------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg---------~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
.+.+.|++++|+|++ ++||+|+.++.. -..+|+++.+++++.|++
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~~laS~s~D~t 184 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLEMFDKEKHSSC 184 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CEE
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------CccchhhhhhccCCCCce
Confidence 368999999999997 799999876420 012689999999999999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCee-----
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD------GRELVAGSSDDCIYVYDLEANKL----- 268 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~~----- 268 (498)
|+||++.+++........ ..+|.+.|.+++|+|+ +.+||+++.||+|++||+..++.
T Consensus 185 I~iWd~~~~~~~~~~~~~------------l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQT------------IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp EEEEEEETTTCCEEEEEE------------EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred EEEEEccCCCCCceEEEE------------EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 999999876532110000 0124558999999996 57999999999999999987642
Q ss_pred ------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE--EEcCCC-CEEE
Q 010883 269 ------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI--DSRGDG-RYLI 339 (498)
Q Consensus 269 ------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~-~~l~ 339 (498)
...+.+|...|++++|++ + ..|++|+.||+|++||++.. ..+...+.+|...|+++ .|+|++ .+|+
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred eeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 236778999999999984 3 48999999999999999721 23456688999999999 578887 8999
Q ss_pred EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883 340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419 (498)
Q Consensus 340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 419 (498)
+++.|++|+|||+++.. .+..+.+|..... ..+.+|+|+++.
T Consensus 328 S~S~D~tvklWD~~~~~----------------------------------~~~~~~~~~~~~~----v~~v~fsp~~~~ 369 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIA----------------------------------TTKTTVSRFRGSN----LVPVVYCPQIYS 369 (524)
T ss_dssp EEETTSEEEEECGGGHH----------------------------------HHCEEEEECSCCS----CCCEEEETTTTE
T ss_pred EeccCCeEEEEECCCCC----------------------------------cccccccccccCc----ccceEeCCCcCe
Confidence 99999999999998732 2222222221001 133467789999
Q ss_pred EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
+++++.|++|++||+.++.++..+.+|.+.|++++|+|++++|++|+.||+|++|++...
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 999999999999999999988888899999999999999999999999999999998654
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.5e-34 Score=281.19 Aligned_cols=262 Identities=21% Similarity=0.298 Sum_probs=206.9
Q ss_pred cCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EE
Q 010883 172 AKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL 249 (498)
Q Consensus 172 ~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l 249 (498)
...|.+.|++++|+|+ +.+|++++.+|.|++|++.+........ +.........+|...|.+++|+|++. +|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS------GECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT------CCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc------ccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 3457779999999997 6899999999999999997531110000 00000001125777899999999988 99
Q ss_pred EEEeCCCeEEEEECCCCee-------eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc
Q 010883 250 VAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 322 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 322 (498)
++|+.||.|++||+..+.. ...+..|...|.+++|+|.++.+|++++.||.|++||++... ....+..+..|
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 276 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAH 276 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECC
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecC
Confidence 9999999999999987422 355668999999999996688999999999999999998321 12567777889
Q ss_pred cccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 323 LEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 323 ~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
...|++++|+|++. +|++|+.||.|++||++... ..+..+..|...
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------~~~~~~~~h~~~ 323 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------LKLHSFESHKDE 323 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEECCSSC
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------CCeEEeecCCCC
Confidence 99999999999987 68899999999999998732 344555555432
Q ss_pred EEEEEEEeccccCCCC-cEEEEEecCCeEEEEECCC--------------CcEEEEeccCCCCeeeeEEcCCCC-eEEEE
Q 010883 402 RTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS--------------GEQVAALKYHTSPVRDCSWHPSQP-MLVSS 465 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~ 465 (498)
+.. +.|+|++ .+|++++.||.|+|||+.. .+.+..+.+|...|++++|+|+++ +|+++
T Consensus 324 --v~~----i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 324 --IFQ----VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp --EEE----EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred --EEE----EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 222 3566677 5799999999999999987 367888889999999999999999 89999
Q ss_pred eCCCcEEEecCCCC
Q 010883 466 SWDGDVVRWEFPGN 479 (498)
Q Consensus 466 ~~Dg~i~iw~~~~~ 479 (498)
+.||.|++|++...
T Consensus 398 s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 398 SEDNIMQVWQMAEN 411 (430)
T ss_dssp ETTSEEEEEEECHH
T ss_pred ECCCCEEEeEcccc
Confidence 99999999998754
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=273.49 Aligned_cols=255 Identities=18% Similarity=0.252 Sum_probs=208.3
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRE 248 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~ 248 (498)
...+|...|++++|+|++++|++++.|+.|+||++..+........ .+|...|.+++|+++ +++
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~~~ 71 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL--------------TGHEGPVWRVDWAHPKFGTI 71 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe--------------cCCCCcEEEEEeCCCCCCCE
Confidence 3457888999999999999999999999999999975433222211 147779999999987 999
Q ss_pred EEEEeCCCeEEEEECCCCe--eeEEEeccCCCeeEEEEeCCC--CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883 249 LVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 249 l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
|++++.||.|++||+.+++ .+..+..|...|.+++|+ ++ +.+|++++.||.|++||++.. .......+..|..
T Consensus 72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAI 148 (379)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTT--SCCCEEEEECCTT
T ss_pred EEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCC--CceeeEEecCCCC
Confidence 9999999999999999987 667777899999999998 66 899999999999999999733 1234456778999
Q ss_pred cEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce
Q 010883 325 GITFIDSRG-------------DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 391 (498)
Q Consensus 325 ~v~~l~~~~-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.|.+++|+| ++.+|++++.|+.|++||++..... ...
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------~~~ 198 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------YVL 198 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE------------------------------EEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc------------------------------eee
Confidence 999999999 6999999999999999999863321 123
Q ss_pred EEEEccCceeEEEEEEEeccccCCC---CcEEEEEecCCeEEEEECCCCc---EEEEe--ccCCCCeeeeEEcCCCCeEE
Q 010883 392 VATYKGHSVLRTLIRCHFSPVYSTG---QKYIYTGSHDSCVYVYDLVSGE---QVAAL--KYHTSPVRDCSWHPSQPMLV 463 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~l~~sp~~~~l~ 463 (498)
+..+.+|.... .+++|+|+ +++|++++.||.|++||+.++. ....+ ..|...|++++|+|++++|+
T Consensus 199 ~~~~~~h~~~v------~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 199 ESTLEGHSDWV------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp EEEECCCSSCE------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred EEEEecccCcE------eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence 44556665322 23366778 8999999999999999998864 22333 34889999999999999999
Q ss_pred EEeCCCcEEEecCCC
Q 010883 464 SSSWDGDVVRWEFPG 478 (498)
Q Consensus 464 s~~~Dg~i~iw~~~~ 478 (498)
+++.||.|++|++..
T Consensus 273 ~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 273 LSGGDNKVTLWKENL 287 (379)
T ss_dssp EEESSSSEEEEEEEE
T ss_pred EecCCCcEEEEeCCC
Confidence 999999999999874
No 84
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.2e-34 Score=268.24 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=211.6
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIV 203 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iw 203 (498)
..+..|...|++++|+|||++||+|+.++ ++||++.++....... .+ .+..+++.++++.++ +++.|+.|++|
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---MR--HLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---CS--CCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---cC--CeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 34578999999999999999999998775 7899998764443321 11 477788999888874 56778999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccCCCeeEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 282 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~ 282 (498)
|+.+++...... +...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+
T Consensus 87 d~~~~~~~~~~~-----------------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~ 143 (355)
T 3vu4_A 87 DDVKKQDVSRIK-----------------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVC 143 (355)
T ss_dssp ETTTTEEEEEEE-----------------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred ECCCCcEEEEEE-----------------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceE
Confidence 999987755433 22379999999764 4444 4789999999988 66555544 44456
Q ss_pred EEeCCCCCEEEE--eeCCCeEEEEcCccccC-----------CCce-eEEeccccccEEEEEEcCCCCEEEEEeCCCc-E
Q 010883 283 CFGDESGHLIYS--GSDDNLCKVWDRRCLNV-----------KGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQA-I 347 (498)
Q Consensus 283 ~~~~~~~~~l~s--~s~dg~i~vwd~~~~~~-----------~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~-i 347 (498)
++++ .++++ |+.||.|++||++.... ...+ +..+.+|...|++++|+|++++|++++.|++ |
T Consensus 144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence 6663 55655 68999999999973210 0012 6788999999999999999999999999998 9
Q ss_pred EEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-c-CceeEEEEEEEeccccCCCCcEEEEEec
Q 010883 348 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-G-HSVLRTLIRCHFSPVYSTGQKYIYTGSH 425 (498)
Q Consensus 348 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 425 (498)
++||+++ ++.+..+. + |... + .+.+|+|++++|++++.
T Consensus 221 ~iwd~~~----------------------------------~~~~~~~~~g~h~~~--v----~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 221 RVFKTED----------------------------------GVLVREFRRGLDRAD--V----VDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp EEEETTT----------------------------------CCEEEEEECTTCCSC--E----EEEEECTTSCEEEEEET
T ss_pred EEEECCC----------------------------------CcEEEEEEcCCCCCc--E----EEEEECCCCCEEEEEEC
Confidence 9999987 35666666 3 5432 2 23367789999999999
Q ss_pred CCeEEEEECCCCcE--EEEec---------------------cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 426 DSCVYVYDLVSGEQ--VAALK---------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 426 dg~i~iwd~~~~~~--~~~~~---------------------~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
|+.|++||+..+.. ...+. .+..+...++|+++++.|++++.||.+++|++..++..
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 99999999976531 11111 11233477899999999999999999999999877655
Q ss_pred CC
Q 010883 483 AP 484 (498)
Q Consensus 483 ~~ 484 (498)
..
T Consensus 341 ~~ 342 (355)
T 3vu4_A 341 ER 342 (355)
T ss_dssp TE
T ss_pred ce
Confidence 43
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=280.07 Aligned_cols=269 Identities=10% Similarity=-0.014 Sum_probs=206.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
.....|.+++|||||+++|+++.|++|+ |...+.. ..+|...|.+++|+|+| .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~------l~gh~~~v~~V~FsPdg-------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD------INCNSKNLFHVKEFPLE-------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC------CSSBGGGTEEEEEECCC-------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce------ecCCCccEEEEEECCCC-------CcceEEEEeC---
Confidence 3467899999999999999999999999 7555422 25889999999999999 4555545443
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC-----CeeEEE
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-----DVNTVC 283 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~ 283 (498)
+....... +|...|.+++|+|+|+.||+++.||.|++||... ++..+. |.. .|.+++
T Consensus 75 ~~~~~~~~---------------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 75 QQNGLLNS---------------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CSSCSSTT---------------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred CCceEeec---------------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence 32222221 1234799999999999999999999999999654 555555 665 499999
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCC---ceeEEe----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKG---KPAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~----~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
|+ |++++|++|+.||+|++||+....... -.+..+ .+|...|.+++|+||| +++++.|+.|++||+....
T Consensus 137 fS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 137 WN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred Ec-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 98 899999999999999999997321100 035665 6788899999999999 8889999999999998733
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
.. ....++. +|.. .+ .+.+|+ |++||+++ ++.|++||+.
T Consensus 214 ~~-------------------------------~~~~tL~~~h~~--~V----~svaFs--g~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 214 HQ-------------------------------PVSRMIQNASRR--KI----TDLKIV--DYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp SC-------------------------------CCEEEEECCCSS--CC----CCEEEE--TTEEEEEC-SSEEEEEETT
T ss_pred cc-------------------------------cceeeecccccC--cE----EEEEEE--CCEEEEEe-CCeEEEEECC
Confidence 10 1223342 4432 12 222455 57888887 6999999999
Q ss_pred CCcEEEEeccCCCCeeeeEE--cCCCCeEEEEeCCCcEEEecCC
Q 010883 436 SGEQVAALKYHTSPVRDCSW--HPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 436 ~~~~~~~~~~h~~~v~~l~~--sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
+++......+|...|.+++| +|++..|++++.||+ ++|.++
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 88874444479999999999 999999999999999 999975
No 86
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-33 Score=291.58 Aligned_cols=267 Identities=20% Similarity=0.281 Sum_probs=205.0
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..+.+|...|.+++|+|+|++|++|+.||+|+|||+.++..... ..+|...|.+++|+|++++|++++.|++|++||
T Consensus 424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR---FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE---EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 35789999999999999999999999999999999999865543 357888999999999999999999999999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
........... ...+|...|.+++|+|++ ..|++|+.|+.|++||+.+++....+.+|.+.|+++
T Consensus 501 ~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v 567 (694)
T 3dm0_A 501 TLGECKYTISE-------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567 (694)
T ss_dssp TTSCEEEEECS-------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCCcceeecc-------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 86543322211 112577789999999987 589999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 362 (498)
+|+ +++++|++|+.||.|++||++ .++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++........
T Consensus 568 ~~s-pdg~~l~sg~~Dg~i~iwd~~----~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 568 AVS-PDGSLCASGGKDGVVLLWDLA----EGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp EEC-TTSSEEEEEETTSBCEEEETT----TTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred EEe-CCCCEEEEEeCCCeEEEEECC----CCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence 998 789999999999999999998 667766665 456899999999998887765 5569999998754322111
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
....... ......++.........+.+++|||+|++|++|+.||.|+|||+.
T Consensus 641 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 641 VDLKAEA---------------------EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCC-------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccc---------------------ccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 0000000 000000000000000012345688899999999999999999985
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-33 Score=268.67 Aligned_cols=251 Identities=18% Similarity=0.270 Sum_probs=202.9
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
|...|++++|+|+|++|++|+.||.|++||+.++..+... ..|...|.+++| ++++|++++.|+.|++||+....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM---AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe---cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence 8999999999999999999999999999999988665543 477889999999 56899999999999999998433
Q ss_pred -eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883 210 -MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 288 (498)
Q Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 288 (498)
..... .+|...|.+++|+|++++|++|+.|+.|++||+.+++....+..|...|.+++|+|.+
T Consensus 208 ~~~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 208 HQIGTL----------------QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp CEEEEE----------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred ceeeEE----------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence 22111 1466789999999999999999999999999999999999999999999999999666
Q ss_pred CCEEEEee--CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCCCccccccC
Q 010883 289 GHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 289 ~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
..++++++ .|+.|++||++ .+..+..+. +...|.+++|+|++++|+++ +.||.|++||+.+...
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~------- 339 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL------- 339 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-------
T ss_pred CCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-------
Confidence 78888876 79999999998 677777775 66789999999999999994 4899999999876321
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 444 (498)
.....+.+|... + ...+|+|++++|++++.||.|++||+.+++.+....
T Consensus 340 -------------------------~~~~~~~~h~~~--v----~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 340 -------------------------TKQVDIPAHDTR--V----LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp -------------------------EEEEEEECCSSC--C----CEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred -------------------------eeEEEecCCCCC--E----EEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 222234455422 2 223677799999999999999999999988776543
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-33 Score=269.27 Aligned_cols=267 Identities=13% Similarity=0.103 Sum_probs=211.2
Q ss_pred CCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883 174 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 253 (498)
Q Consensus 174 ~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~ 253 (498)
.|..+|++++|+|++++|++++.|+.|++||+.+++......+. +|...|.+++|+|++++|++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------------EHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------------CCSSCEEEEEEETTTTEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------------CCCCcccEEEEeCCCCEEEEEc
Confidence 36678999999999999999999999999999887522221111 4666899999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEE--eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE
Q 010883 254 SDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 331 (498)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 331 (498)
.||.|++||+.+++....+ ..|...|.+++|+ +++++|++++.||.|++||++..............|...|.+++|
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 9999999999988754443 5789999999998 788999999999999999997221100123344678999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883 332 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411 (498)
Q Consensus 332 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
+|++++|++++.|+.|++||++.......... .........+..+..+..|.... .++
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~v------~~~ 208 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP----------------TPWGSKMPFGELMFESSSSCGWV------HGV 208 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCC----------------BTTBSCCCTTCEEEECCCCSSCE------EEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccc----------------cccccccchhhheEecCCCCCeE------EEE
Confidence 99999999999999999999875332111000 00000112245666666665322 223
Q ss_pred ccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
+|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|+++ .||.|++|++..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 567799999999999999999999999999999999999999999999988877 899999999987
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-35 Score=280.82 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=197.6
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
+..+|++++|+|++++|++++.|+.|++||+.++.......+ .+|...|.+++|+|++++|++++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------~~h~~~v~~~~~s~~~~~l~s~s~ 75 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF--------------SDHDKIVTCVDWAPKSNRIVTCSQ 75 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB--------------CCCSSCEEEEEECTTTCCEEEEET
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE--------------ecCCceEEEEEEeCCCCEEEEEeC
Confidence 344899999999999999999999999999987732111111 257779999999999999999999
Q ss_pred CCeEEEEECCCCe---eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc---eeEEecc-ccccEE
Q 010883 255 DDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVLMG-HLEGIT 327 (498)
Q Consensus 255 dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~-~~~~v~ 327 (498)
|+.|++||+.+++ ....+..|...|.+++|+ +++++|++++.|+.|++||++ ... ....+.. |...|.
T Consensus 76 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 76 DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFE----QENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp TSSEEEC------CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC---------CCCCEEECSSCCSCEE
T ss_pred CCeEEEEEcCCCCceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEEC----CcccceeeeEeecccCCCeE
Confidence 9999999999887 566777899999999998 788999999999999999997 433 4667777 999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 407 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (498)
+++|+|++++|++++.|+.|++||++........... .+. .....+..+..+ +|... +
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~------------~~~~~~~~~~~~-~~~~~--v--- 208 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS----VWG------------SRLPFNTVCAEY-PSGGW--V--- 208 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC----SSC------------SCCCEEEEEECC-CCSSS--E---
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc----ccc------------cccchhhhhhcc-cCCce--E---
Confidence 9999999999999999999999999754321111000 000 000112334444 44422 2
Q ss_pred EeccccCCCCcEEEEEecCCeEEEEECCCCcE----EEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.+++|+|++++|++++.||.|++||+.+++. +..+.+|..+|.+++|+|++++|++++.|+.+ +|+...
T Consensus 209 -~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 209 -HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp -EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred -EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 2336777999999999999999999999887 77888999999999999999999998866655 666653
No 90
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-34 Score=294.90 Aligned_cols=264 Identities=19% Similarity=0.181 Sum_probs=212.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeEEE
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHI 202 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i~i 202 (498)
..+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .......+|...|++++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45789999999999999999999999999999999985422 233345678889999999998 999999999999999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeEEEeccCCC
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSD 278 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--g~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~ 278 (498)
||+.+++....... .+|...|.+++|+|+ ++.+++|+.||.|++||+.++. ....+..|...
T Consensus 82 wd~~~~~~~~~~~~--------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 82 WKEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EECCCCcccccccc--------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 99988753222221 146679999999999 9999999999999999998873 34566789999
Q ss_pred eeEEEEeCC------------CCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---CCEEEEEeC
Q 010883 279 VNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK 343 (498)
Q Consensus 279 v~~~~~~~~------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~~ 343 (498)
|.+++|+|. ++.+|++|+.||.|++||++...........+.+|...|++++|+|+ +.+|++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 999999853 58899999999999999998433233566788899999999999999 899999999
Q ss_pred CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE
Q 010883 344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 423 (498)
Q Consensus 344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 423 (498)
||.|++||++......
T Consensus 228 Dg~I~iwd~~~~~~~~---------------------------------------------------------------- 243 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPW---------------------------------------------------------------- 243 (753)
T ss_dssp SSCEEEEEESSSSSCC----------------------------------------------------------------
T ss_pred CCEEEEecCCCCCCcc----------------------------------------------------------------
Confidence 9999999987632100
Q ss_pred ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
...+.....|...|++++|+|++++|++++.||.|++|++....
T Consensus 244 -------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 244 -------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp -------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred -------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 00011223577889999999999999999999999999998644
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-33 Score=272.08 Aligned_cols=263 Identities=14% Similarity=0.164 Sum_probs=208.1
Q ss_pred CCccccCCCCceEEEEEcCC----C---CEEEEEECCCeEEEEECCCCeE-----EEEEeecCCC-----ceeEEEEEeC
Q 010883 123 GPWPVDQTTSRAYVSQFSAD----G---SLFVAGFQASQIRIYDVERGWK-----IQKDILAKSL-----RWTVTDTSLS 185 (498)
Q Consensus 123 ~~~~l~~h~~~v~~~~~s~d----g---~~la~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~-----~~~v~~~~~s 185 (498)
....+.+|...|++++|+|+ | ++|++++.||.|++|++.++.. +... ..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~ 130 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMKKHSFWALKWG 130 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE---CCSCTTGGGSCEEEEEEE
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee---cccccccCCCcEEEEEEe
Confidence 35567799999999999999 9 9999999999999999987753 3332 344 4789999999
Q ss_pred ----CCCCe-EEEEECCCeEEEEECCC------CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 186 ----PDQRH-LVYASMSPIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 186 ----p~~~~-l~~~s~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
|++++ |++++.|+.|++||+.+ ++............ .......|...|.+++|+|++ +|++++.
T Consensus 131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~ 205 (397)
T 1sq9_A 131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG----TVESPMTPSQFATSVDISERG-LIATGFN 205 (397)
T ss_dssp CCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE----EECCSSSSCCCCCEEEECTTS-EEEEECT
T ss_pred eccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee----eeccccCCCCCceEEEECCCc-eEEEEeC
Confidence 99999 99999999999999987 44332100000000 000012356689999999999 9999999
Q ss_pred CCeEEEEECCCCeeeEEEec---c---CCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCceeEEecc----
Q 010883 255 DDCIYVYDLEANKLSLRILA---H---TSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMG---- 321 (498)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~---- 321 (498)
||.|++||+.+++.+..+.. | ...|.+++|+ +++.+|++++.| |.|++||++ ..+.+..+..
T Consensus 206 dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~----~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 206 NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETE----FGERIGSLSVPTHS 280 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETT----TCCEEEEECBC---
T ss_pred CCcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECC----CCcccceeccCccc
Confidence 99999999999999999988 9 9999999998 789999999999 999999998 7788888888
Q ss_pred ---------ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 322 ---------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 322 ---------~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
|...|.+++|+|++++|++++.|+.|++||+++. +.+
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------~~~ 326 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----------------------------------ERI 326 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------EEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----------------------------------cee
Confidence 9999999999999999999999999999999873 334
Q ss_pred EEEc------cC---------------ceeEEEEEEEeccccCCCC----------cEEEEEecCCeEEEEECCCCc
Q 010883 393 ATYK------GH---------------SVLRTLIRCHFSPVYSTGQ----------KYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 393 ~~~~------~~---------------~~~~~~~~~~~~~~~s~~~----------~~l~~g~~dg~i~iwd~~~~~ 438 (498)
..+. .| . ..+. .++|+|++ ++|++++.||.|++||+.+|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~v~----~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 327 TTLNMHCDDIEIEEDILAVDEHGDSLAE--PGVF----DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEECCGGGCSSGGGCCCBCTTSCBCSS--CCEE----EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEEecccCcccchhhhhccccccccccC--Ccee----EEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 4444 33 2 2222 33556687 799999999999999998764
No 92
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-33 Score=269.14 Aligned_cols=300 Identities=15% Similarity=0.163 Sum_probs=197.8
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCC-eEEEEECCCeEEEEEC----CCCce------eccccccccccC
Q 010883 154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV----GSGTM------ESLANVTEIHDG 222 (498)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~d~~i~iwd~----~~~~~------~~~~~~~~~~~~ 222 (498)
.+.+|++...... .....|...|++++|+|+++ +|++++.|+.|++|++ .+++. ........ .
T Consensus 26 ~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~- 99 (425)
T 1r5m_A 26 IDSSDDLDGFVKI---LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPF--A- 99 (425)
T ss_dssp --------CCCEE---CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCC--C-
T ss_pred ccccccchhhhhh---eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccc--c-
Confidence 4567887665322 33345556899999999999 9999999999999999 77762 11111100 0
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEE
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 302 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 302 (498)
......+|...|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+ +++++|++++.||.|+
T Consensus 100 ---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 100 ---LSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTI 174 (425)
T ss_dssp ---CC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCCEE
T ss_pred ---ccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC-CCCCEEEEEecCCeEE
Confidence 0011224677999999999999999999999999999 6777888888999999999998 7899999999999999
Q ss_pred EEcCccccCCCceeEEecccccc---------------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883 303 VWDRRCLNVKGKPAGVLMGHLEG---------------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 303 vwd~~~~~~~~~~~~~~~~~~~~---------------v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
+||+. .+..+..+..+... +.++.|+|++ .+++++.|+.|++||++..........
T Consensus 175 iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~---- 245 (425)
T 1r5m_A 175 LWNVI----SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG---- 245 (425)
T ss_dssp EEETT----TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC----
T ss_pred EEECC----CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc----
Confidence 99997 45555554444443 5555555543 345555555555555554433222110
Q ss_pred ccccceeecCCcCcccccCC-C-----------CceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 368 YEWDYRWMDYPPQARDLKHP-C-----------DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
....+..+.+.++...+... . ...+..+..|... + .++.|+|++ ++++++.||.|++||+.
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--i----~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS--I----VSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC--E----EEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc--E----EEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 01111222222222111111 1 2233334334321 2 233566688 99999999999999999
Q ss_pred CCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 436 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+++.+..+..|...|.+++|+|++++|++++.||.|++|++....
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999999999999999999999999998654
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=270.13 Aligned_cols=283 Identities=9% Similarity=0.038 Sum_probs=211.7
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883 137 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 216 (498)
Q Consensus 137 ~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 216 (498)
..+.+++++|++|+.||.|++||+.+++.+.... ...|.++.|+|+ +++++.|+.|++|+............
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 3456788999999999999999999987665543 346888899998 99999999999998775321111100
Q ss_pred cccccCccccccCCCCceecEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEE
Q 010883 217 TEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~ 293 (498)
.... .....+|..+|.+++|+| ++++|++++.||.|++||+.+++...... .|...|.+++|+ +++.+|+
T Consensus 114 ~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~la 186 (343)
T 3lrv_A 114 NKVL------REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLA 186 (343)
T ss_dssp CCEE------EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEE
T ss_pred ccee------EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEE
Confidence 0000 000113556899999999 99999999999999999999998866553 456689999998 7899999
Q ss_pred EeeCCCeEEEEcCccccCCCcee-EEecc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccc
Q 010883 294 SGSDDNLCKVWDRRCLNVKGKPA-GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 371 (498)
Q Consensus 294 s~s~dg~i~vwd~~~~~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 371 (498)
+|+.||.|++||++ .+..+ ..+.. |..+|++++|+|++.+|++++ |+.|++||+++.......
T Consensus 187 sg~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~---------- 251 (343)
T 3lrv_A 187 LYSPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY---------- 251 (343)
T ss_dssp EECTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS----------
T ss_pred EEcCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee----------
Confidence 99999999999998 66665 67777 999999999999999999999 559999999985432211
Q ss_pred ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCe
Q 010883 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPV 450 (498)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v 450 (498)
..+..+...... .+.+|+|++++|++++. |+.|++|++......... .++
T Consensus 252 ---------------------~~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~ 302 (343)
T 3lrv_A 252 ---------------------PTYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEE 302 (343)
T ss_dssp ---------------------CCCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEE
T ss_pred ---------------------cccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCc
Confidence 001111100000 22467789999999998 999999999766543332 568
Q ss_pred eeeEEcC---CCCeEEEEeCCCcEEEecCCC
Q 010883 451 RDCSWHP---SQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 451 ~~l~~sp---~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
..++|.+ +...|++++.||.+.++-...
T Consensus 303 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 303 SALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred eeEecCccccccceeEEEecCCceEEEEecC
Confidence 8899998 888999999999999886443
No 94
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.1e-32 Score=254.92 Aligned_cols=274 Identities=19% Similarity=0.259 Sum_probs=211.1
Q ss_pred EEECCCe--EEEEECCCCeEEEEEeecCCCceeEEEEEeCCC-CCeEEEEECCCeEEEEECCCCceeccccccccccCcc
Q 010883 148 AGFQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 224 (498)
Q Consensus 148 ~~~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 224 (498)
+|...|+ +.++...+. .+.....+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+.+........
T Consensus 9 ~g~d~g~~~~~~~~~~~~-~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~------- 80 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTE-QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR------- 80 (340)
T ss_dssp -----------------C-EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-------
T ss_pred cccCCCCccEEEEEccCC-ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-------
Confidence 3444454 334444333 23333346789999999999997 689999999999999999876532211111
Q ss_pred ccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEE
Q 010883 225 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 304 (498)
Q Consensus 225 ~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vw 304 (498)
...+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.++ +.+.+|++++.|+.+++|
T Consensus 81 ----~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 81 ----ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp ----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEE
T ss_pred ----EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEE
Confidence 113578899999999999999999999999999999999888888888999999997 788899999999999999
Q ss_pred cCccccCCCceeEEeccccccEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883 305 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 382 (498)
Q Consensus 305 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
|+.. .........+|...+..++|++++ .++++++.|+.|++||+++
T Consensus 156 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------------------------- 204 (340)
T 4aow_A 156 NTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---------------------------- 204 (340)
T ss_dssp CTTS---CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT----------------------------
T ss_pred EeCC---CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC----------------------------
Confidence 9861 223444567889999999998764 5788999999999999987
Q ss_pred cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeE
Q 010883 383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 462 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 462 (498)
.+.+..+.+|..... +.+|+|++++|++|+.||.|++||+.+.+.+..+.. ...|.+++|+|++. +
T Consensus 205 ------~~~~~~~~~h~~~v~------~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~ 270 (340)
T 4aow_A 205 ------CKLKTNHIGHTGYLN------TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-W 270 (340)
T ss_dssp ------TEEEEEECCCSSCEE------EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-E
T ss_pred ------CceeeEecCCCCcEE------EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCc-e
Confidence 355666777764322 235677999999999999999999999999988875 46899999999876 5
Q ss_pred EEEeCCCcEEEecCCCC
Q 010883 463 VSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 463 ~s~~~Dg~i~iw~~~~~ 479 (498)
++++.|+.|++||+...
T Consensus 271 ~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 271 LCAATGPSIKIWDLEGK 287 (340)
T ss_dssp EEEEETTEEEEEETTTT
T ss_pred eeccCCCEEEEEECCCC
Confidence 55667999999999765
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.2e-33 Score=269.48 Aligned_cols=262 Identities=11% Similarity=0.076 Sum_probs=182.9
Q ss_pred eCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC--------CCCEEEEEeCC
Q 010883 184 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--------DGRELVAGSSD 255 (498)
Q Consensus 184 ~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--------~g~~l~~g~~d 255 (498)
+.+++.+|++++.|++|+|||+.++......... ...+|...|.+++|+| |+++||+|+.|
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~-----------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLG-----------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEEC-----------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeec-----------ccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3445678999999999999999887654322211 2347899999999998 88999999999
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCce--------------------
Q 010883 256 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP-------------------- 315 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------------------- 315 (498)
++|+|||+.++..+..+..|..+|.+++|+|.+..+|++|+.||+|++||++........
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 999999999988888888999999999999655678999999999999999733211100
Q ss_pred -eEEeccccccEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE
Q 010883 316 -AGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 393 (498)
Q Consensus 316 -~~~~~~~~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (498)
.....+|...+.++.|+ |+++.|++++.|+.+++||+........... .........+.++ ..
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~----~~~~~~~~~~~~~-----------~~ 310 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD----STMKLGPKNLLPN-----------VQ 310 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCS-----------EE
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee----ecCccccEEEccc-----------cc
Confidence 11224577788899986 7999999999999999999987543222110 0000001111111 11
Q ss_pred EEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883 394 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
....+.. .....+.+ ..++.++++|+.||.|++||+.+++.+..+..|..+|++++|+|||++||+++.|| +.+
T Consensus 311 ~~~~~~~---~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 311 GISLFPS---LLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp EECSSCC---SSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred cccccCc---ceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 1111110 11111221 23667788899999999999999998888888999999999999999999999776 555
Q ss_pred ecCC
Q 010883 474 WEFP 477 (498)
Q Consensus 474 w~~~ 477 (498)
|.+.
T Consensus 385 vrL~ 388 (393)
T 4gq1_A 385 TRLM 388 (393)
T ss_dssp EEEG
T ss_pred EEEe
Confidence 5543
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.4e-33 Score=266.74 Aligned_cols=255 Identities=15% Similarity=0.213 Sum_probs=205.4
Q ss_pred CCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCCeEEEE
Q 010883 129 QTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 203 (498)
Q Consensus 129 ~h~~~v~~~~~s~d----g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iw 203 (498)
.|...|++++|+|+ |++|++|+.||.|++||+.+++.+... ..|...|.+++|+| ++++|++++.|+.|++|
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY---VGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE---ESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee---cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 37788999999999 679999999999999999988665543 46778999999999 99999999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe----------
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---------- 273 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---------- 273 (498)
|+.+++........ .+|...|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 144 d~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 144 NIQTDTLVAIFGGV-------------EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp ETTTTEEEEEECST-------------TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred EeecCeEEEEeccc-------------ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence 99988765443211 1466699999999999999999999999999999876543332
Q ss_pred ------------------ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC----------CCceeEEecccccc
Q 010883 274 ------------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV----------KGKPAGVLMGHLEG 325 (498)
Q Consensus 274 ------------------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~~ 325 (498)
.|...|.+++|+ +++|++++.||.|++||++.... ....+..+..|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred cccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence 399999999997 66999999999999999873321 11346778889999
Q ss_pred EEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 326 ITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 326 v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
|++++|+|+ +++|++++.||.|++||+....... ..+..+..|.....
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------------~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------------------------------AKCTTLTHHKCGAA 337 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG------------------------------CEEEEECCTTCCSC
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc------------------------------ccceEEcccccCCc
Confidence 999999999 9999999999999999998743211 23445565532233
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
+..+ +|+|++++|++++.||.|++||+.+
T Consensus 338 v~~~----~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 338 IRQT----SFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEE----EECTTSSEEEEEETTSEEEEEEC--
T ss_pred eEEE----EeCCCCCeEEEEeCCCEEEEEEecC
Confidence 3333 5667999999999999999999853
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=258.90 Aligned_cols=271 Identities=13% Similarity=0.059 Sum_probs=218.9
Q ss_pred ccccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE
Q 010883 114 MLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 193 (498)
Q Consensus 114 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 193 (498)
.+++....+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+.... +...|.+++|+|++++|++
T Consensus 57 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~ 132 (369)
T 3zwl_B 57 SVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFLA 132 (369)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEEE
Confidence 344444444556778999999999999999999999999999999999987666543 5558999999999999999
Q ss_pred EECC-----CeEEEEECCCCceeccccccccccCccccccCCCCcee--cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-
Q 010883 194 ASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEA- 265 (498)
Q Consensus 194 ~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~- 265 (498)
++.+ +.|++||+..+............... ....|.. .+.+++|+|++++|++++.||.|++||+.+
T Consensus 133 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH-----KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE-----EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred ecCCccCCCCEEEEEEecCCccceeecccccceee-----eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 9998 99999999776543222111100000 0012233 799999999999999999999999999998
Q ss_pred CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC
Q 010883 266 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 345 (498)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg 345 (498)
.+.+..+..|...|.+++|+ +++.+|++++.||.|++||++ ....+..+. +...+..++|+|+++++++++.++
T Consensus 208 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 208 YEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC
T ss_pred cEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCCceeEEecCCCceEEEeecCC
Confidence 78888888999999999998 789999999999999999998 667777766 778999999999999999999988
Q ss_pred --------------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883 346 --------------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411 (498)
Q Consensus 346 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
.+++||+.+ ...+..+.+|.... .++
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~----------------------------------~~~~~~~~~~~~~v------~~~ 321 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIF----------------------------------EEEIGRVQGHFGPL------NTV 321 (369)
T ss_dssp -------------CEEEEEETTT----------------------------------CCEEEEEECCSSCE------EEE
T ss_pred CceEEEEecCCCcceeEEEecCC----------------------------------CcchhheecccCcE------EEE
Confidence 788888876 35666666665332 223
Q ss_pred ccCCCCcEEEEEecCCeEEEEECCCCcE
Q 010883 412 VYSTGQKYIYTGSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 412 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 439 (498)
+|+|++++|++++.||.|++|++..+..
T Consensus 322 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 322 AISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred EECCCCCEEEEEcCCCeEEEEECccccc
Confidence 6777999999999999999999987654
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5e-33 Score=272.27 Aligned_cols=267 Identities=13% Similarity=0.158 Sum_probs=196.9
Q ss_pred CCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCce------------ecEEEEE
Q 010883 174 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS------------FGIFSLK 241 (498)
Q Consensus 174 ~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~i~~~~ 241 (498)
.+...|++++|+|++++||+|+.||.|+||++.+++........... ......+|. ..|.+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-----VYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-----EEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-----EecccccccccccccccccccCceEEEE
Confidence 34568999999999999999999999999999876521100000000 000011354 6899999
Q ss_pred EcCCC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------EE-EeccCCCe
Q 010883 242 FSTDG--RELVAGSSDDCIYVYDLEANKLS---------------------------------------LR-ILAHTSDV 279 (498)
Q Consensus 242 ~s~~g--~~l~~g~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v 279 (498)
|+|++ ..|++++.|+.|++||+.+++.. .. ..+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 79999999999999999764432 12 24799999
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE-------EeccccccEEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-------VLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWD 351 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd 351 (498)
.+++|+ +++++|++| .|+.|++||++.. ..... .+.+|...|++++|+|++ ++|++++.||.|++||
T Consensus 181 ~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 181 NSISIN-SDYETYLSA-DDLRINLWHLEIT---DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp CEEEEC-TTSSEEEEE-CSSEEEEEETTEE---EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EEEEEc-CCCCEEEEe-CCCeEEEEECCCC---CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 999998 689999998 7999999999621 12222 356899999999999998 9999999999999999
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEE------EEEEeccccCCCCcEEEEEec
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL------IRCHFSPVYSTGQKYIYTGSH 425 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~g~~ 425 (498)
+++..... ..+..+..+...... .....+++|+|++++|++++.
T Consensus 256 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 256 MRASALCD------------------------------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp TTTCSSSC------------------------------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred CcCCcccc------------------------------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 98744210 113344444310000 001233467779999999999
Q ss_pred CCeEEEEECCC-CcEEEEeccCCCC---------------eeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 426 DSCVYVYDLVS-GEQVAALKYHTSP---------------VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 426 dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+.|++||+.+ ++++..+.+|... +..++|+|++++|++++.||.|++||+.++..
T Consensus 306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 9999999997 8888888888542 23499999999999999999999999987653
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.9e-32 Score=260.99 Aligned_cols=280 Identities=17% Similarity=0.229 Sum_probs=213.8
Q ss_pred ccccccccccCCCCCc--cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC
Q 010883 110 DCCHMLSRYLPVNGPW--PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 187 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 187 (498)
+....+++.-..+... .+.+|...|++++|+|||++||+|+.||.|+|||+.+++.+.. ..+|...+.++++ +
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~---~~~h~~~v~~~s~--~ 198 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN---MTSHSARVGSLSW--N 198 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEE--E
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE---EeCCCCceEEEee--C
Confidence 3444444443333222 3467889999999999999999999999999999999966554 3577778988877 5
Q ss_pred CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 188 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 188 ~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
+.+|++++.|+.+++||.......... . .+|...+..+.|+|+++++++++.|+.|++|+..+++
T Consensus 199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~-~--------------~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 199 SYILSSGSRSGHIHHHDVRVAEHHVAT-L--------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEE-E--------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred CCEEEEEeCCCceeEeeecccceeeEE-e--------------cccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 789999999999999998765432111 0 1466789999999999999999999999999998765
Q ss_pred ----eeEEEeccCCCeeEEEEeCCCCCEEEEe--eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE
Q 010883 268 ----LSLRILAHTSDVNTVCFGDESGHLIYSG--SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 268 ----~~~~~~~~~~~v~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~ 341 (498)
.+.....|...|.+++|+|.+..+++++ +.|++|++||+. .+.....+..| ..+.++.|+|+++.++++
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDAH-SQVCSILWSPHYKELISG 338 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeeccc-cceeeeeecCCCCeEEEE
Confidence 3456678999999999998788888764 579999999998 77777777654 678899999999998876
Q ss_pred e--CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883 342 G--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419 (498)
Q Consensus 342 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 419 (498)
+ .|+.|+|||+.+ ...+..+.+|..... +++|+|||++
T Consensus 339 sg~~d~~I~iwd~~~----------------------------------~~~v~~l~gH~~~V~------~l~~spdg~~ 378 (420)
T 4gga_A 339 HGFAQNQLVIWKYPT----------------------------------MAKVAELKGHTSRVL------SLTMSPDGAT 378 (420)
T ss_dssp ECTTTCCEEEEETTT----------------------------------CCEEEEECCCSSCEE------EEEECTTSSC
T ss_pred EecCCCEEEEEECCC----------------------------------CcEEEEEcCCCCCEE------EEEEcCCCCE
Confidence 5 789999999987 467888888874332 3367789999
Q ss_pred EEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeE
Q 010883 420 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 454 (498)
Q Consensus 420 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 454 (498)
|++|+.|++|+|||+....+....+.+...+....
T Consensus 379 l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s 413 (420)
T 4gga_A 379 VASAAADETLRLWRCFELDPARRREREKASAAKSS 413 (420)
T ss_dssp EEEEETTTEEEEECCSCSSCC--------------
T ss_pred EEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence 99999999999999987766655555544443333
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=249.00 Aligned_cols=241 Identities=20% Similarity=0.229 Sum_probs=204.4
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
...+|...|++++| |++++|++++.||.|++||+.++....... .|...|.+++|+|++++|+
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY----------------TGQGFLNSVCYDSEKELLL 75 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE----------------ECSSCEEEEEEETTTTEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee----------------cCCccEEEEEECCCCCEEE
Confidence 44678889999999 999999999999999999998876544332 2455899999999999999
Q ss_pred EEeCCCeEEEEECCCC---eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEE
Q 010883 251 AGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 327 (498)
+++.||.|++|++... +....+..|...|.+++|. +++|++++.||.|++|| .......+..|...+.
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVW 146 (313)
T ss_dssp EEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEE
T ss_pred EecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc------CCcEEEecccCCCcee
Confidence 9999999999998764 5567788999999999994 67999999999999999 3567788888999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEE
Q 010883 328 FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLI 405 (498)
Q Consensus 328 ~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 405 (498)
++.|.| ++.+|++++.|+.|++||.. ..+..+.. +... +.
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------------~~~~~~~~~~~~~--i~ 188 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQND------------------------------------KVIKTFSGIHNDV--VR 188 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETT------------------------------------EEEEEECSSCSSC--EE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecC------------------------------------ceEEEEeccCccc--EE
Confidence 999988 89999999999999999943 34444444 3322 22
Q ss_pred EEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 406 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 406 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
. .+++|++. +++++.||.|++||+.+++.+..+.+|...|++++|+|++ .|++++.||.|++||+..+..
T Consensus 189 ~----~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 189 H----LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp E----EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE
T ss_pred E----EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce
Confidence 2 24556788 9999999999999999999999999999999999999999 699999999999999987653
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.3e-32 Score=260.87 Aligned_cols=245 Identities=11% Similarity=0.113 Sum_probs=192.5
Q ss_pred cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883 128 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 128 ~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~ 206 (498)
.+|...|.+++|+| ++++|++++.|+.|++||+.+. .+........+...|.+++|+|++++|++++.|+.|++||+.
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence 47999999999999 7899999999999999999864 555555555566789999999999999999999999999994
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCC----CeeeEEEeccCCCeeE
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA----NKLSLRILAHTSDVNT 281 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~ 281 (498)
++...... +|...|.+++|+|+++ +|++++.|+.|++||+.+ +..+..+ .|...|.+
T Consensus 194 -~~~~~~~~----------------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~ 255 (383)
T 3ei3_B 194 -GHEIFKEK----------------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNA 255 (383)
T ss_dssp -SCEEEEEE----------------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEE
T ss_pred -CCEEEEec----------------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEE
Confidence 33222211 4666899999999999 999999999999999987 5565555 79999999
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc-----------------ccEEEEEEcCCCCEEEEEeCC
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----------------EGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~v~~l~~~~~~~~l~s~~~d 344 (498)
++|+|.++.+|++++.|+.|++||++ .......+.+|. ..+..++|+|++++ +++.|
T Consensus 256 ~~~s~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp EEECTTTSCEEEEEESSSEEEEEETT----BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred EEEcCCCCCEEEEEcCCCcEEEEECC----CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence 99983389999999999999999998 333333443332 34555677777776 77899
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
+.|++||+.+ ++.+..+.++.....+. ..+|+|++++|++|+
T Consensus 330 ~~i~iwd~~~----------------------------------~~~~~~l~~~~~~~~~~----~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 330 RTIDIYDANS----------------------------------GGLVHQLRDPNAAGIIS----LNKFSPTGDVLASGM 371 (383)
T ss_dssp CCEEEEETTT----------------------------------CCEEEEECBTTBCSCCC----EEEECTTSSEEEEEE
T ss_pred CeEEEEecCC----------------------------------CceeeeecCCCCCceEE----EEEEecCccEEEEec
Confidence 9999999987 35556666533111111 125777999999997
Q ss_pred cCCeEEEEECCC
Q 010883 425 HDSCVYVYDLVS 436 (498)
Q Consensus 425 ~dg~i~iwd~~~ 436 (498)
||.|++||+.+
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999864
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-32 Score=266.81 Aligned_cols=251 Identities=17% Similarity=0.188 Sum_probs=196.5
Q ss_pred CCceeEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEE
Q 010883 174 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 251 (498)
Q Consensus 174 ~~~~~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~ 251 (498)
.|...|++++|+| ++++||+|+.||.|+|||+.+++...... ..+|...|++++|+| ++.+|++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------~~gH~~~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------GIGAGGSITGLKFNPLNTNQFYA 182 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------------CCSSSCCCCEEEECSSCTTEEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------------ccCCCCCEEEEEEeCCCCCEEEE
Confidence 3555799999999 56799999999999999998775433322 126888999999998 7899999
Q ss_pred EeCCCeEEEEECCCCeeeEEEec--cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 252 GSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 252 g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
|+.||+|++||++++........ +...+.+++|+ +++.+|++|+.||.|++||++ ++.+..+.+|...|+++
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-----~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-----GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-----SCBCCCSBCCSSCEEEE
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-----cceeEEEecccceEEee
Confidence 99999999999987655433333 34467899998 789999999999999999985 45667788999999999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 330 DSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 330 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
+|+|++. +|++++.|+.|++||++........ ....+|... .
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-------------------------------~~~~~h~~~------v 299 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-------------------------------LYSLPHRHP------V 299 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-------------------------------SBCCBCSSC------E
T ss_pred eecCCCceEEEEecCcceeeEEecccccccceE-------------------------------EEeeecccc------c
Confidence 9999876 7889999999999999875432211 111223321 2
Q ss_pred eccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCC------CeeeeEEcCCCCeEEEEe------------CCCc
Q 010883 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS------PVRDCSWHPSQPMLVSSS------------WDGD 470 (498)
Q Consensus 409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~sp~~~~l~s~~------------~Dg~ 470 (498)
.+++|+|+|++|++++.||.|+|||+.+++....+..|.. .+..+.|+|++.++++++ .++.
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 3457889999999999999999999999988877766643 244567888888777764 2357
Q ss_pred EEEecCCCCCC
Q 010883 471 VVRWEFPGNGE 481 (498)
Q Consensus 471 i~iw~~~~~~~ 481 (498)
|++||..++..
T Consensus 380 i~iwd~~~g~~ 390 (435)
T 4e54_B 380 IDVFDGNSGKM 390 (435)
T ss_dssp EEEECSSSCCE
T ss_pred EEEEECCCCcE
Confidence 99999887643
No 103
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=259.35 Aligned_cols=250 Identities=19% Similarity=0.277 Sum_probs=200.6
Q ss_pred CCCceeEEEEEeCCCCCeEE-EEEC---CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---
Q 010883 173 KSLRWTVTDTSLSPDQRHLV-YASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--- 245 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~-~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--- 245 (498)
.+|...|.+++|+|++..++ +++. |+.|++||+.+++....... +|..+|.+++|+|+
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---------------EKAKPIKCGTFGATSLQ 79 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---------------EESSCEEEEECTTCCTT
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---------------cccCcEEEEEEcCCCCC
Confidence 45888999999999996555 5555 89999999998775433322 25558999999998
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-eeEEEeccCCCeeEEEEeC-----CCCCEEEEeeCCCeEEEEcCccccCCCc-eeEE
Q 010883 246 GRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD-----ESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV 318 (498)
Q Consensus 246 g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~-----~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~ 318 (498)
+++|++|+.||.|++||+.+++ .+..+..|...|.++.|.+ +++++|++++.||.|++||++ ... ++..
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~ 155 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR----QKDDPVAN 155 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT----SCSSCSEE
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC----CCCCccee
Confidence 6999999999999999999988 8888899999999997642 678899999999999999998 443 5666
Q ss_pred eccccc----cEEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883 319 LMGHLE----GITFID----SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 319 ~~~~~~----~v~~l~----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
+..|.. .+.+++ |+|++++|++++.|+.|++||+++..
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------------- 201 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------------------------------- 201 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----------------------------------
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----------------------------------
Confidence 665554 788988 78899999999999999999998732
Q ss_pred eEEEEccCceeEEEEEEEeccccCC---CCcEEEEEecCCeEEEEECCCCcEEEEe-----ccCCCCeeeeEEcCCCC-e
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYST---GQKYIYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQP-M 461 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~-~ 461 (498)
. .....+.. .+ .+++|+| ++.+|++++.||.|++||+.+++.+..+ .+|...|++++|+|+++ +
T Consensus 202 ~-~~~~~~~~--~v----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 202 L-RWETNIKN--GV----CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp E-EEEEECSS--CE----EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred e-eeecCCCC--ce----EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 2 22222221 11 2336777 8999999999999999999887654443 38999999999999999 8
Q ss_pred EEEEeCCCcEEEecCCCCCCC
Q 010883 462 LVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 462 l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
|++++.||.|++||+......
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC
T ss_pred EEEEeCCCcEEEeecCCCccc
Confidence 999999999999999866543
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=271.61 Aligned_cols=255 Identities=12% Similarity=0.065 Sum_probs=200.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-----eEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
.|...|.+++|||||++||+++.||.|+||+.+. .+.. .. |.. .|.+++|||||++|++|+.||+|+||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~---l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE---CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee---cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 5688999999999999999999999999999654 2222 12 332 59999999999999999999999999
Q ss_pred ECCCCceecc--ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEE-eccCC
Q 010883 204 DVGSGTMESL--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI-LAHTS 277 (498)
Q Consensus 204 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---~~~~-~~~~~ 277 (498)
|+.++..... ....... ....+|...|.+++|+||| +++++.|+.|++||+..++. ...+ .+|..
T Consensus 157 d~~~~~l~~~~~i~l~ti~-------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIR-------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEE-------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred ECCCCccccccceeeeeee-------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 9988743110 0001000 0012577799999999999 88889999999999988774 3456 37889
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEE--cCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
.|.+++|+ ++.|++++ +++|++||+. .........+|...|..++| +|++..|++++.||+ ++|....
T Consensus 228 ~V~svaFs---g~~LASa~-~~tIkLWd~~----~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~- 297 (588)
T 2j04_A 228 KITDLKIV---DYKVVLTC-PGYVHKIDLK----NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE- 297 (588)
T ss_dssp CCCCEEEE---TTEEEEEC-SSEEEEEETT----TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-
T ss_pred cEEEEEEE---CCEEEEEe-CCeEEEEECC----CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-
Confidence 99999997 47888887 6999999996 44443444489999999999 999999999999999 9999752
Q ss_pred CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
..++||+..+++. |+++++|+..
T Consensus 298 -------------------------------------------------------~~~spd~~l~a~~--d~~v~lW~~~ 320 (588)
T 2j04_A 298 -------------------------------------------------------LHVTADNIIAPYL--EKKFKKWSTI 320 (588)
T ss_dssp -------------------------------------------------------EEEECCCSSHHHH--HHHHHHTTTT
T ss_pred -------------------------------------------------------EEECCCceEEEEc--CCEEEEEECC
Confidence 1356688777664 9999999975
Q ss_pred CCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC
Q 010883 436 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 467 (498)
Q Consensus 436 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~ 467 (498)
.+. +..+.+ ...|.+++|+|||+.+|+++.
T Consensus 321 g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 321 WNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 444 334443 667999999999999998863
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.3e-32 Score=257.58 Aligned_cols=253 Identities=15% Similarity=0.168 Sum_probs=202.7
Q ss_pred ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EE
Q 010883 171 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL 249 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l 249 (498)
...+|...|++++|+|++++|++++.|+.|++|++.++.......... +|...|.+++|+|+++ +|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------------RYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------------ECSSCEEEEEEEESSSEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-------------ecCCceEEEEECCCCCcEE
Confidence 345788899999999999999999999999999998765111111111 3556899999999999 99
Q ss_pred EEEeCCCeEEEEEC-CCCeeeEEEec--cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC-----CceeEEecc
Q 010883 250 VAGSSDDCIYVYDL-EANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMG 321 (498)
Q Consensus 250 ~~g~~dg~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~~ 321 (498)
++|+.||.|++||+ .+++. ..+.. |...|.+++|+ + +.+|++++.|+.|++||++..... .+++..+.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred EEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 99999999999999 87765 66778 99999999999 4 899999999999999999731000 44444555
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883 322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 400 (498)
Q Consensus 322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
|...|.+++|+|++ +++++.|+.|++||++. .... .......+..
T Consensus 149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~--------------------------------~~~~~~~~~~ 194 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN--------------------------------GTIEESGLKY 194 (342)
T ss_dssp SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC--------------------------------CEEEECSCSS
T ss_pred eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc--------------------------------ceeeecCCCC
Confidence 88999999999987 99999999999999987 3321 1111112221
Q ss_pred eEEEEEEEeccccCC-CCcEEEEEecCCeEEEEECCCC------cEEEEeccCCC---------CeeeeEEcCCCCeEEE
Q 010883 401 LRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSG------EQVAALKYHTS---------PVRDCSWHPSQPMLVS 464 (498)
Q Consensus 401 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~---------~v~~l~~sp~~~~l~s 464 (498)
.+ .+.+|+| +++++++++.||.|++|++... +.+..+..|.. .|++++|+|++++|++
T Consensus 195 --~i----~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 268 (342)
T 1yfq_A 195 --QI----RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp --CE----EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred --ce----eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence 11 2336778 8999999999999999999887 77788887765 9999999999999999
Q ss_pred EeCCCcEEEecCCCCC
Q 010883 465 SSWDGDVVRWEFPGNG 480 (498)
Q Consensus 465 ~~~Dg~i~iw~~~~~~ 480 (498)
++.||.|++||+..+.
T Consensus 269 ~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 269 AGSDGIISCWNLQTRK 284 (342)
T ss_dssp EETTSCEEEEETTTTE
T ss_pred ecCCceEEEEcCccHh
Confidence 9999999999998664
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.4e-33 Score=263.78 Aligned_cols=250 Identities=14% Similarity=0.133 Sum_probs=190.1
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEE-----------CCCeEEEEECCCCeE-EEEE-----eecCCCceeEEEEEeCCCC
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGF-----------QASQIRIYDVERGWK-IQKD-----ILAKSLRWTVTDTSLSPDQ 188 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~-----------~dg~i~vw~~~~~~~-~~~~-----~~~~~~~~~v~~~~~sp~~ 188 (498)
.+.+|...|.+++++ ++.+++|. .|+.+++|++..... +... .....+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 466788888888764 55676654 477899999865421 1111 1122344568999999999
Q ss_pred CeEEEEE--CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883 189 RHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 189 ~~l~~~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
++|++++ .|++|+|||+.+++...... |...|.+++|+|||++|++++.+ .+.+|+..++
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-----------------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-----------------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-----------------CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 9987655 68999999999987654432 33479999999999999999865 4777777777
Q ss_pred eeeEE--EeccCCCeeEEEEeCCCCCEEEEeeCCC----eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEE
Q 010883 267 KLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 340 (498)
Q Consensus 267 ~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 340 (498)
+.+.. ...|...|.+++|+ +++.++++++.|+ .+++|++............+.+|...|++++|+|||++||+
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFI-ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred cceeeeecCCCCCCEEEEEEc-CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence 65543 34688899999998 7889999998887 68889886322222234567789999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-ccCceeEEEEEEEeccccCCCCcE
Q 010883 341 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKY 419 (498)
Q Consensus 341 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~ 419 (498)
|+.|+.|+|||+++ .+.+..+ .+|.... .+++|||||++
T Consensus 287 gs~D~~V~iwd~~~----------------------------------~~~~~~~~~gH~~~V------~~v~fSpdg~~ 326 (365)
T 4h5i_A 287 ASNDNSIALVKLKD----------------------------------LSMSKIFKQAHSFAI------TEVTISPDSTY 326 (365)
T ss_dssp EETTSCEEEEETTT----------------------------------TEEEEEETTSSSSCE------EEEEECTTSCE
T ss_pred EcCCCEEEEEECCC----------------------------------CcEEEEecCcccCCE------EEEEECCCCCE
Confidence 99999999999987 3556654 6777433 23377889999
Q ss_pred EEEEecCCeEEEEECCC
Q 010883 420 IYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 420 l~~g~~dg~i~iwd~~~ 436 (498)
|++|+.|++|+|||+..
T Consensus 327 laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSEEEEEECCT
T ss_pred EEEEeCCCeEEEEEcCC
Confidence 99999999999999864
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.6e-31 Score=257.97 Aligned_cols=282 Identities=14% Similarity=0.116 Sum_probs=223.9
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--ecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
..+.+++|+|++.++++++.++.|++||+.+++...... ...+|...|.+++|+|+++++++++.|+.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456699999988888888889999999999886654322 234677799999999999999999999999999998876
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 288 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 288 (498)
...... .|...+.+++|+|+++.+++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++
T Consensus 203 ~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~ 264 (433)
T 3bws_A 203 YKATVD----------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS-KD 264 (433)
T ss_dssp EEEEEE----------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC-TT
T ss_pred EEEEEc----------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc-CC
Confidence 654332 2444799999999999885554 799999999999988777654 4568999998 77
Q ss_pred CCEEEEee--------CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCCCcc
Q 010883 289 GHLIYSGS--------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 289 ~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~ 359 (498)
++++++++ .||.|++||++ .++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---- 335 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---- 335 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----
T ss_pred CCEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----
Confidence 88888887 58899999997 55555444 566789999999999755 56688999999999862
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec--------------
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-------------- 425 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-------------- 425 (498)
+.+..+..... . ..++|+|++++|++++.
T Consensus 336 ------------------------------~~~~~~~~~~~---~----~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 336 ------------------------------KVQKSIPVFDK---P----NTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp ------------------------------EEEEEEECSSS---E----EEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred ------------------------------cEEEEecCCCC---C----CeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 33333332211 1 23467779999888876
Q ss_pred -CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC-CCcEEEecCCC
Q 010883 426 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-DGDVVRWEFPG 478 (498)
Q Consensus 426 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~-Dg~i~iw~~~~ 478 (498)
||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999988875 457999999999999988875 99999999863
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=4.8e-31 Score=238.33 Aligned_cols=280 Identities=13% Similarity=0.161 Sum_probs=191.3
Q ss_pred eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-eE-EEEEC--C
Q 010883 134 AYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IV-HIVDV--G 206 (498)
Q Consensus 134 v~~~~~s~dg~---~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~-~i-~iwd~--~ 206 (498)
+.++.|-..|. .++++++ ..|++|+..++.........+.|..+|..+.+.||..-|++..-.+ .+ .++.+ .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55666655543 5666765 5899999999855555556677777899999999765554432211 11 11111 1
Q ss_pred CC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEEC-CCCeeeEEEeccCCCeeEE
Q 010883 207 SG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL-EANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 207 ~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~ 282 (498)
.. +........ .+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+..|...++.+
T Consensus 121 pd~~~~~~~l~s-------------~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 121 SDDESEKQVLLK-------------SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL 184 (356)
T ss_dssp -----CCEEEEE-------------EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE
T ss_pred CCccccccEEEe-------------CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE
Confidence 11 000000000 1233345544 5666555533 5999999999 5588888888999999999
Q ss_pred EEeC--CCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc---ccEEEEEEcCCCCEE------------EEEeCCC
Q 010883 283 CFGD--ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---EGITFIDSRGDGRYL------------ISNGKDQ 345 (498)
Q Consensus 283 ~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~l~~~~~~~~l------------~s~~~dg 345 (498)
+|++ .++.+|++++.|++|+|||+. +++.+..+.+|. ..+.+++|+|+|.++ ++|+.|+
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 9984 267999999999999999998 888889887654 367788999999876 5678899
Q ss_pred cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-----ccCceeEEEEEEEeccccCCCCcEE
Q 010883 346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-----KGHSVLRTLIRCHFSPVYSTGQKYI 420 (498)
Q Consensus 346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l 420 (498)
+|++||..+.. .+..+ .+|... .... .+ ++.++
T Consensus 261 tIklWd~~tgk----------------------------------~l~v~~~~~p~Gh~~~--~lsg----~~--sg~~l 298 (356)
T 2w18_A 261 QLIVINPKTTL----------------------------------SVGVMLYCLPPGQAGR--FLEG----DV--KDHCA 298 (356)
T ss_dssp EEEEEETTTTE----------------------------------EEEEEEECCCTTCCCC--EEEE----EE--ETTEE
T ss_pred EEEEEECCCCE----------------------------------EEEEEEeeccCCCcce--eEcc----cc--CCCEE
Confidence 99999998732 22221 233211 1111 11 36789
Q ss_pred EEEecCCeEEEEECCCCcEEEEeccCCCCee-eeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 421 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 421 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
++|+.|++|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999999999987666 5899999999999999999999986
No 109
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-31 Score=246.56 Aligned_cols=213 Identities=19% Similarity=0.297 Sum_probs=171.8
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCCCeEEEEcCc
Q 010883 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~vwd~~ 307 (498)
.+|...|.+++|+|+|++|++|+.|+.|++||+.. .+.+..+.+|.+.|.+++|+++ ++++|++|+.|++|++||++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 36888999999999999999999999999999974 3667888999999999999754 48899999999999999997
Q ss_pred cccCCCceeEEeccccccEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883 308 CLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 385 (498)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (498)
.. ....+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++.....
T Consensus 86 ~~--~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--------------------------- 136 (297)
T 2pm7_B 86 NG--RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--------------------------- 136 (297)
T ss_dssp SS--CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---------------------------
T ss_pred CC--ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---------------------------
Confidence 22 11355677889999999999997 899999999999999999863210
Q ss_pred CCCCceEEEEccCceeEEEEEEEecccc---------CCCCcEEEEEecCCeEEEEECCCCc----EEEEeccCCCCeee
Q 010883 386 HPCDQSVATYKGHSVLRTLIRCHFSPVY---------STGQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHTSPVRD 452 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------s~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~ 452 (498)
....+.+|.. .+..+.|+|.. .+++++|++|+.|+.|++||+.+++ ....+.+|...|.+
T Consensus 137 -----~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 137 -----SPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp -----CCEEEECCSS--CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred -----eeeeeecccC--ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 1123334432 22223333321 1136799999999999999998876 66788899999999
Q ss_pred eEEcCCC---CeEEEEeCCCcEEEecCCCC
Q 010883 453 CSWHPSQ---PMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 453 l~~sp~~---~~l~s~~~Dg~i~iw~~~~~ 479 (498)
++|+|++ .+|++++.|++|++||+...
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999995 79999999999999998764
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-31 Score=259.95 Aligned_cols=273 Identities=17% Similarity=0.229 Sum_probs=208.2
Q ss_pred cccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-------eEEEEEeecCCCceeEEEEEeCCCCC-eEEEEEC
Q 010883 126 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASM 196 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~d-g~~la~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~s~ 196 (498)
....|.+.|++++|+|+ +.+||+++.||.|++|++.+. ..........+|...|++++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 45679999999999997 789999999999999999761 00122233457778999999999998 9999999
Q ss_pred CCeEEEEECCCCceeccc-cccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---eeeEE
Q 010883 197 SPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN---KLSLR 271 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~---~~~~~ 271 (498)
||.|++|++.++...... ... ....+|...|.+++|+| ++.+|++++.||.|++||+.++ +.+..
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~----------~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAK----------NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECS----------EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CCeEEEEeCCCCCCCCceeccc----------eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 999999999874321110 000 01125777899999999 7789999999999999999987 56777
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLW 350 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~dg~i~iw 350 (498)
+..|...|++++|+|....+|++|+.||.|++||++. ...++..+..|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 8899999999999955556899999999999999982 2467788889999999999999985 69999999999999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc-EEEEEecCCeE
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCV 429 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i 429 (498)
|+........... ........+..+.+|... +..+ +|+|++. +|++++.||.|
T Consensus 350 d~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~~~--v~~~----~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 350 DLSKIGEEQSTED--------------------AEDGPPELLFIHGGHTAK--ISDF----SWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp EGGGTTCCCCHHH--------------------HHHCCTTEEEECCCCSSC--EEEE----EECSSSTTEEEEEETTSEE
T ss_pred eCCCCccccCccc--------------------cccCCcceEEEcCCCCCC--ceEE----EECCCCCCEEEEEECCCCE
Confidence 9987432111000 000011445555566532 2222 5666888 99999999999
Q ss_pred EEEECCCC
Q 010883 430 YVYDLVSG 437 (498)
Q Consensus 430 ~iwd~~~~ 437 (498)
+||++...
T Consensus 404 ~iw~~~~~ 411 (430)
T 2xyi_A 404 QVWQMAEN 411 (430)
T ss_dssp EEEEECHH
T ss_pred EEeEcccc
Confidence 99998653
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.1e-29 Score=244.06 Aligned_cols=267 Identities=14% Similarity=0.115 Sum_probs=211.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeE-EEEECCCeEEEEECCCCceeccccccccccC
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDG 222 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (498)
.++++++.|+.|++||+.+++.+.... .+. .+.+++|+|++++| ++++.|+.|++||+.+++........
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~---~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~----- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP---VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee---cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----
Confidence 467888899999999999986655432 233 58999999999987 56668999999999988765543321
Q ss_pred ccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE-EEeeCCCe
Q 010883 223 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDDNL 300 (498)
Q Consensus 223 ~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~ 300 (498)
..+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++++.| ++++.|+.
T Consensus 74 ------------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 74 ------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS-PDGKKLYVTNNGDKT 139 (391)
T ss_dssp ------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC-TTSSEEEEEETTTTE
T ss_pred ------------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC-CCCCEEEEEeCCCCE
Confidence 1799999999999886554 679999999999998777754 4578999998 667765 78888999
Q ss_pred EEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCc
Q 010883 301 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 379 (498)
Q Consensus 301 i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (498)
|++||+. .++.+..+..+ ..+..++|+|++++| ++++.++.|++||+++.
T Consensus 140 v~~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------------ 190 (391)
T 1l0q_A 140 VSVINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------------ 190 (391)
T ss_dssp EEEEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------------
T ss_pred EEEEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------------
Confidence 9999997 66777776655 567999999999987 57778899999999873
Q ss_pred CcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe---cCCeEEEEECCCCcEEEEeccCCCCeeeeEEc
Q 010883 380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 456 (498)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 456 (498)
..+..+..+. .. ...+|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+
T Consensus 191 ----------~~~~~~~~~~---~~----~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s 252 (391)
T 1l0q_A 191 ----------SVIDTVKVEA---AP----SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT 252 (391)
T ss_dssp ----------EEEEEEECSS---EE----EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC
T ss_pred ----------eEEEEEecCC---Cc----cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEc
Confidence 3333333322 11 2336777999999888 68999999999999998888765 57899999
Q ss_pred CCCCeE-EEEeCCCcEEEecCCCCC
Q 010883 457 PSQPML-VSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 457 p~~~~l-~s~~~Dg~i~iw~~~~~~ 480 (498)
|++++| ++++.|+.|++||+..+.
T Consensus 253 ~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 253 PDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCCc
Confidence 999977 677889999999998654
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-30 Score=251.52 Aligned_cols=238 Identities=22% Similarity=0.403 Sum_probs=202.1
Q ss_pred CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE
Q 010883 173 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 252 (498)
Q Consensus 173 ~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g 252 (498)
..|...|.+++| ++++|++|+.||.|++||+.+++...... +|...|.+++| ++++|++|
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------~h~~~v~~l~~--~~~~l~sg 189 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT----------------GHTGSVLCLQY--DERVIITG 189 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC----------------CCSSCEEEEEC--CSSEEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc----------------CCCCcEEEEEE--CCCEEEEE
Confidence 345567888877 89999999999999999999887654432 47779999999 78899999
Q ss_pred eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 253 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
+.||.|++||+.+++.+..+..|...|.+++|+ +.++++|+.||.|++||++... .......+.+|...|.+++|
T Consensus 190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSS-CCEEEEEECCCSSCEEEEEE-
T ss_pred cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCC-CceeeeEecCCCCcEEEEEe-
Confidence 999999999999999999999999999999996 4599999999999999997321 11223677889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883 333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (498)
++++|++++.||.|++||+++ ...+..+.+|....... .+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~----------------------------------~~~~~~~~~~~~~v~~~--~~--- 304 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTST----------------------------------CEFVRTLNGHKRGIACL--QY--- 304 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTT----------------------------------CCEEEEEECCSSCEEEE--EE---
T ss_pred -CCCEEEEEeCCCeEEEEECCc----------------------------------CcEEEEEcCCCCcEEEE--Ee---
Confidence 778999999999999999987 35566666666433222 22
Q ss_pred cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
++.++++|+.||.|++||+.+++++..+.+|...|.+++| ++.+|++|+.||.|++||+....
T Consensus 305 ---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 305 ---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp ---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred ---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 4789999999999999999999999999999999999999 78899999999999999987654
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.6e-30 Score=249.56 Aligned_cols=283 Identities=20% Similarity=0.309 Sum_probs=190.9
Q ss_pred cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC---CCeEEEEECCCeEEEE
Q 010883 128 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIV 203 (498)
Q Consensus 128 ~~h~~~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~s~d~~i~iw 203 (498)
.+|...|.+++|+| ++++|++++.||.|++||+.++....... +...+.++.|+|. +.++++++.++.|++|
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 46999999999999 77899999999999999999986655432 3447899999984 4599999999999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-eeEEE---------
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRI--------- 272 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~-~~~~~--------- 272 (498)
|+.+++...... +|...|.+++|+|+++ .|++|+.||.|++||+.++. ....+
T Consensus 172 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 172 DLKSGSCSHILQ----------------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp ESSSSCCCEEEC----------------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred eCCCcceeeeec----------------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 998876543322 4666899999999998 58999999999999998765 33333
Q ss_pred ------eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-----cccEEEEEEcCCCCEEEEE
Q 010883 273 ------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 273 ------~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~ 341 (498)
..|...|.+++|+ +++++|++++.||.|++||++ .+.....+..+ ...+........+..++++
T Consensus 236 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSS----NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp CTTTSSCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred eeccccccccCceeEEEEc-CCCCEEEEecCCCeEEEEECC----CCccceeccccccccccccceeEEecCCCceEEEE
Confidence 4788999999998 789999999999999999998 43333322221 1122222233345567777
Q ss_pred eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883 342 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 342 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 421 (498)
+.++.|++||+.+ +..+..+.+|..... +.+|+|++++|+
T Consensus 311 ~~~~~i~v~d~~~----------------------------------~~~~~~~~~~~~~v~------~~~~s~~~~~l~ 350 (408)
T 4a11_B 311 PYGSTIAVYTVYS----------------------------------GEQITMLKGHYKTVD------CCVFQSNFQELY 350 (408)
T ss_dssp EETTEEEEEETTT----------------------------------CCEEEEECCCSSCEE------EEEEETTTTEEE
T ss_pred ecCCEEEEEECcC----------------------------------CcceeeeccCCCeEE------EEEEcCCCCEEE
Confidence 8899999999987 466777777764322 235677999999
Q ss_pred EEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC-CCCeEEEEeCCCcEEEecCCC
Q 010883 422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
+++.||.|++||+.+++.+.....+.. ...+.+ ....+.+++.|+.+++|+.+.
T Consensus 351 s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEETTSCEEEEEECC-------------------------------------------
T ss_pred EECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCcc
Confidence 999999999999999988766543322 223344 333566777899999998753
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-30 Score=251.40 Aligned_cols=247 Identities=18% Similarity=0.243 Sum_probs=197.9
Q ss_pred eEEEEEeCCCCCeEE-EEECCCeEEEEECCCCcee-ccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeC
Q 010883 178 TVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS 254 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~ 254 (498)
....++++|+...++ +++.||.|+||++...... .... ...+|...|.+++|+| ++++|++|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-------------~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP-------------LVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC-------------CBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc-------------eEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 344578888776544 4788999999999654321 1111 1126888999999999 9999999999
Q ss_pred CCeEEEEECCCC-------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe--cccccc
Q 010883 255 DDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEG 325 (498)
Q Consensus 255 dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~ 325 (498)
||.|++||+.++ +.+..+.+|...|.+++|+|...++|++++.||.|++||++ .++.+..+ ..|...
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG----TGAAVLTLGPDVHPDT 178 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT----TTEEEEEECTTTCCSC
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC----CCCccEEEecCCCCCc
Confidence 999999999987 56788889999999999984434799999999999999998 77888888 789999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE-ccCceeEEE
Q 010883 326 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTL 404 (498)
Q Consensus 326 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 404 (498)
|.+++|+|++++|++++.|+.|++||+++. ..+..+ ..|... ..
T Consensus 179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------------------------------~~~~~~~~~~~~~-~~ 223 (402)
T 2aq5_A 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKG----------------------------------TVVAEKDRPHEGT-RP 223 (402)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTT----------------------------------EEEEEEECSSCSS-SC
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEeCCCC----------------------------------ceeeeeccCCCCC-cc
Confidence 999999999999999999999999999872 445555 444422 11
Q ss_pred EEEEeccccCCCCcEEEEE---ecCCeEEEEECCCCcE-EEEec-cCCCCeeeeEEcCCCCeEEE-EeCCCcEEEecCCC
Q 010883 405 IRCHFSPVYSTGQKYIYTG---SHDSCVYVYDLVSGEQ-VAALK-YHTSPVRDCSWHPSQPMLVS-SSWDGDVVRWEFPG 478 (498)
Q Consensus 405 ~~~~~~~~~s~~~~~l~~g---~~dg~i~iwd~~~~~~-~~~~~-~h~~~v~~l~~sp~~~~l~s-~~~Dg~i~iw~~~~ 478 (498)
.. ..|+|++++|++| +.|+.|++||+.+++. +.... .|...|.+++|+|++++|++ ++.||.|++|++..
T Consensus 224 ~~----~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 224 VH----AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp CE----EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred eE----EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 12 2466799999999 7899999999988654 22222 57788999999999998865 45799999999987
Q ss_pred CC
Q 010883 479 NG 480 (498)
Q Consensus 479 ~~ 480 (498)
+.
T Consensus 300 ~~ 301 (402)
T 2aq5_A 300 EA 301 (402)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=4.6e-29 Score=239.67 Aligned_cols=286 Identities=15% Similarity=0.150 Sum_probs=216.2
Q ss_pred cccCCCCceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 203 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~l-a~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iw 203 (498)
.+..| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..... +. .+.+++|+|++++|++++ .++.|++|
T Consensus 27 ~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 27 TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GS-SPQGVAVSPDGKQVYVTNMASSTLSVI 101 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---CC-CccceEECCCCCEEEEEECCCCEEEEE
Confidence 34444 458999999999977 5666899999999999866554322 22 799999999999886655 56999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
|+.+++....... ...+.+++|+|+++.| ++++.++.|++||+.+++.+..+..+ ..+.++
T Consensus 102 d~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 102 DTTSNTVAGTVKT-----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI 163 (391)
T ss_dssp ETTTTEEEEEEEC-----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred ECCCCeEEEEEeC-----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence 9998876544331 1268999999999977 67778999999999999988877655 457999
Q ss_pred EEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCCCc
Q 010883 283 CFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSN 358 (498)
Q Consensus 283 ~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~ 358 (498)
+|+ ++++.| ++++.++.|++||++ .++....+. +...+.+++|+|++++|++++ .++.|++||+++.
T Consensus 164 ~~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--- 234 (391)
T 1l0q_A 164 AVT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--- 234 (391)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---
T ss_pred EEC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---
Confidence 998 666665 678889999999997 556555554 556889999999999999888 6899999999872
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEE-EEEecCCeEEEEECCCC
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYDLVSG 437 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iwd~~~~ 437 (498)
+.+..+..+... ..++|+|++++| ++++.|+.|++||+.++
T Consensus 235 -------------------------------~~~~~~~~~~~~-------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 235 -------------------------------KITARIPVGPDP-------AGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp -------------------------------EEEEEEECCSSE-------EEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred -------------------------------eEEEEEecCCCc-------cEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 344455444321 233677799877 56678999999999999
Q ss_pred cEEEEeccCCCCee---eeE------------EcCCC----------CeEEEEeCCCcEEEecCCCCCC
Q 010883 438 EQVAALKYHTSPVR---DCS------------WHPSQ----------PMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 438 ~~~~~~~~h~~~v~---~l~------------~sp~~----------~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+.+..+..|..+.. .+. |+.+. -.+...+.|..+++|++..+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 277 TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 99988876654421 112 22221 2456667789999999976653
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.1e-30 Score=252.53 Aligned_cols=256 Identities=13% Similarity=0.139 Sum_probs=197.6
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCc---eecccccccc-----------ccC---------------------
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT---MESLANVTEI-----------HDG--------------------- 222 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~---~~~~~~~~~~-----------~~~--------------------- 222 (498)
++.+++|+|+|++|+++ .++.|++||+.+++ .......... ...
T Consensus 6 p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 78899999999966655 57899999999887 3322221100 000
Q ss_pred ------ccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeeeEEEe--ccCCCeeEEEEeCCCCCE
Q 010883 223 ------LDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE--ANKLSLRIL--AHTSDVNTVCFGDESGHL 291 (498)
Q Consensus 223 ------~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 291 (498)
.........+|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+ +++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~ 163 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTT 163 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCE
Confidence 000001112466689999999999996 889999999999999 888877776 567899999998 78999
Q ss_pred EEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 368 (498)
Q Consensus 292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 368 (498)
|++|+.+|.|++|++............+.+|...|++++|+|+ +++|++++.|+.|++||+++.
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~------------- 230 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC------------- 230 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-------------
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-------------
Confidence 9999999999999997332111133467789999999999999 999999999999999999863
Q ss_pred cccceeecCCcCcccccCCCCceEEE-EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc--
Q 010883 369 EWDYRWMDYPPQARDLKHPCDQSVAT-YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-- 445 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-- 445 (498)
..+.. +.+|.... .+++|+ ++++|++++.|+.|++||+.+++++..+..
T Consensus 231 ---------------------~~~~~~~~~h~~~v------~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 282 (450)
T 2vdu_B 231 ---------------------FIVDKWLFGHKHFV------SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS 282 (450)
T ss_dssp ---------------------TCEEEECCCCSSCE------EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHH
T ss_pred ---------------------ceeeeeecCCCCce------EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchh
Confidence 33333 33454322 233667 899999999999999999999998888762
Q ss_pred -----------------------CCCCeeeeEEcCCCCeEEEEe-CCCcEEEecC
Q 010883 446 -----------------------HTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF 476 (498)
Q Consensus 446 -----------------------h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~ 476 (498)
+...|.+++|+|++++|++++ .|+.|++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 235789999999999999998 8999999999
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=8.2e-30 Score=242.41 Aligned_cols=252 Identities=18% Similarity=0.209 Sum_probs=197.4
Q ss_pred ecCCCceeEEEEEeCCC---CCeEEEEECCCeEEEEECCC-CceeccccccccccCccccccCCCCceecEEEEEEcCCC
Q 010883 171 LAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 246 (498)
Q Consensus 171 ~~~~~~~~v~~~~~sp~---~~~l~~~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g 246 (498)
...+|...|++++|+|+ +++|++++.||.|++||+.+ +.... ... .+|...|.+++|+|++
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-~~~--------------~~h~~~v~~~~~~~~~ 98 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-KAQ--------------QMHTGPVLDVCWSDDG 98 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-EEE--------------EECSSCEEEEEECTTS
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-EEe--------------ccccCCEEEEEECcCC
Confidence 55788889999999999 69999999999999999987 33221 111 1366689999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE--eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883 247 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF--GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 247 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
++|++++.||.|++||+.+++... +..|...|.+++| + +++.+|++++.||.|++||++ ..+.+..+..+.
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~- 171 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTR----SSNPMMVLQLPE- 171 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSS----CSSCSEEEECSS-
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECC----CCcEEEEEecCC-
Confidence 999999999999999999998765 5689999999999 5 778899999999999999998 667777777654
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc-cCceeEE
Q 010883 325 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRT 403 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 403 (498)
.+.++.+.+ ..+++++.++.+.+|+++.... ...... .......
T Consensus 172 ~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 216 (368)
T 3mmy_A 172 RCYCADVIY--PMAVVATAERGLIVYQLENQPS---------------------------------EFRRIESPLKHQHR 216 (368)
T ss_dssp CEEEEEEET--TEEEEEEGGGCEEEEECSSSCE---------------------------------EEEECCCSCSSCEE
T ss_pred CceEEEecC--CeeEEEeCCCcEEEEEeccccc---------------------------------hhhhccccccCCCc
Confidence 666666664 4888999999999999986321 111111 1111122
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCCC---cEEEEeccCCC------------CeeeeEEcCCCCeEEEEeCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHTS------------PVRDCSWHPSQPMLVSSSWD 468 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~------------~v~~l~~sp~~~~l~s~~~D 468 (498)
.........+++ ..+++++.||.|++||+... ..+..+..|.. +|++++|+|++++|++++.|
T Consensus 217 ~~~~~~~~~~~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 294 (368)
T 3mmy_A 217 CVAIFKDKQNKP--TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD 294 (368)
T ss_dssp EEEEEECTTSCE--EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred eEEEcccCCCCC--CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC
Confidence 333333333322 33999999999999999887 55677777765 79999999999999999999
Q ss_pred CcEEEecCCCCCC
Q 010883 469 GDVVRWEFPGNGE 481 (498)
Q Consensus 469 g~i~iw~~~~~~~ 481 (498)
|.|++||+..+..
T Consensus 295 g~i~iwd~~~~~~ 307 (368)
T 3mmy_A 295 GRFSFWDKDARTK 307 (368)
T ss_dssp SCEEEEETTTTEE
T ss_pred CeEEEEECCCCcE
Confidence 9999999987643
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.9e-29 Score=232.20 Aligned_cols=248 Identities=18% Similarity=0.244 Sum_probs=199.0
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
.+.+|...|++++|+|+|++||+|+.||+|++|++.+++.+... .+|...+.++. +++..+++++.++.+++|+.
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~---~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~ 136 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---TSHSARVGSLS--WNSYILSSGSRSGHIHHHDV 136 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEE--EETTEEEEEETTSEEEEEET
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe---cCccceEEEee--cCCCEEEEEecCCceEeeec
Confidence 34678999999999999999999999999999999999766543 45666666554 56789999999999999998
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEEEeccCCCeeE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNT 281 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~ 281 (498)
.......... .+|...+.++.+++++++|++++.|+.|++||+.+++. ......+.+.|.+
T Consensus 137 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 201 (318)
T 4ggc_A 137 RVAEHHVATL---------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201 (318)
T ss_dssp TSSSCEEEEE---------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred CCCceeEEEE---------------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence 7654321111 14666899999999999999999999999999987653 3455578889999
Q ss_pred EEEeCCCCCEE--EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCCC
Q 010883 282 VCFGDESGHLI--YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSS 357 (498)
Q Consensus 282 ~~~~~~~~~~l--~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~ 357 (498)
+.+++.+..++ ++++.++.|++||.+ ...... ...+...+..+.|+|++..+++++ .|+.|++||+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--- 273 (318)
T 4ggc_A 202 VAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--- 273 (318)
T ss_dssp EEECTTSTTEEEEEECTTTCEEEEEETT----TCCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---
T ss_pred EEecCCCCcEEEEEecCCCCEEEEEecc----cccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---
Confidence 99986666665 456788999999986 444443 345778899999999999887655 799999999987
Q ss_pred ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883 358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437 (498)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 437 (498)
++.+..+.+|..... +++|+|++++|++|+.||+|+|||+...
T Consensus 274 -------------------------------~~~~~~l~gH~~~V~------~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 274 -------------------------------MAKVAELKGHTSRVL------SLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp -------------------------------CCEEEEECCCSSCEE------EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred -------------------------------CcEEEEEcCCCCCEE------EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 467788888874332 3367789999999999999999998765
Q ss_pred c
Q 010883 438 E 438 (498)
Q Consensus 438 ~ 438 (498)
.
T Consensus 317 d 317 (318)
T 4ggc_A 317 D 317 (318)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=9.8e-31 Score=243.40 Aligned_cols=216 Identities=14% Similarity=0.169 Sum_probs=172.9
Q ss_pred ccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCeE
Q 010883 125 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV 200 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~i 200 (498)
..+.+|.++|++++|+| ++++||+|+.|++|++||+.++.. .......+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 51 ~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 51 ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 45789999999999987 489999999999999999987631 112234578889999999998 7899999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-----------------CCEEEEEeCCCeEEEEEC
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----------------GRELVAGSSDDCIYVYDL 263 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----------------g~~l~~g~~dg~i~vwd~ 263 (498)
++|++.++....... ...+|...|.+++|+|+ +++|++|+.|+.|++||+
T Consensus 130 ~lwd~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKK-------------INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp EEEEECSSSCEEECC-------------BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred EEEecCCCCCcceee-------------eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 999998653211111 11246668999999997 468999999999999999
Q ss_pred CCC---eeeEEEeccCCCeeEEEEeCCC---CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883 264 EAN---KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 264 ~~~---~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
... +....+.+|...|.+++|+|.. +.+|++++.||+|++||+............+..|...|.+++|+|++++
T Consensus 197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI 276 (316)
T ss_dssp CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC
T ss_pred CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE
Confidence 765 4566778999999999998432 3899999999999999987321111122345568899999999999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 010883 338 LISNGKDQAIKLWDIRK 354 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~ 354 (498)
|++++.|+.|++|+...
T Consensus 277 las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEESSSCEEEEEECT
T ss_pred EEEEcCCCeEEEEEECC
Confidence 99999999999999764
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.2e-29 Score=238.17 Aligned_cols=263 Identities=13% Similarity=0.096 Sum_probs=181.9
Q ss_pred EEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceec
Q 010883 157 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 236 (498)
Q Consensus 157 vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 236 (498)
||++.+...+. ....|...|++++|+||+++|++|+.++ ++||++.+++....... ..
T Consensus 3 i~s~~~~~~~~---~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~------------------~~ 60 (355)
T 3vu4_A 3 LGSMITRNPIV---PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM------------------RH 60 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC------------------SC
T ss_pred cccccccCCcc---ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec------------------CC
Confidence 45555543322 3356788999999999999999988775 78999887654322111 13
Q ss_pred EEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC-c
Q 010883 237 IFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-K 314 (498)
Q Consensus 237 i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~ 314 (498)
+..+++.++++.+ ++++.|+.|++||+.+++.+..+. +...|.+++|+ ++ .++++ .|+.|++||+. .. +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~----~~~~ 131 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLS-RE--FIVVS-YGDVISVFKFG----NPWK 131 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEEC-SS--EEEEE-ETTEEEEEESS----TTCC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEc-CC--EEEEE-EcCEEEEEECC----CCce
Confidence 6677888888877 567778999999999999988875 77799999997 33 34444 47899999997 33 4
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCce-
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS- 391 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (498)
.+..+.. +...+++++ .++++ |+.||.|++||+++.......... .....-.+
T Consensus 132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~p~ 187 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-------------------VQQKAILGK 187 (355)
T ss_dssp BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------C
T ss_pred eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc-------------------ccccccCcc
Confidence 4444433 344556666 56665 688999999999874311100000 00000012
Q ss_pred EEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCe-EEEEECCCCcEEEEec-c-CCCCeeeeEEcCCCCeEEEEeCC
Q 010883 392 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALK-Y-HTSPVRDCSWHPSQPMLVSSSWD 468 (498)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~l~s~~~D 468 (498)
+..+.+|..... +.+|+|+|++|++|+.|++ |++||+.+++++..+. + |...|++++|+|++++|++++.|
T Consensus 188 ~~~~~~h~~~v~------~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 188 GVLIKAHTNPIK------MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp CEEECCCSSCEE------EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cEEEEccCCceE------EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 566777764332 3367779999999999998 9999999999999998 5 99999999999999999999999
Q ss_pred CcEEEecCCCCC
Q 010883 469 GDVVRWEFPGNG 480 (498)
Q Consensus 469 g~i~iw~~~~~~ 480 (498)
++|++||+....
T Consensus 262 ~~v~iw~~~~~~ 273 (355)
T 3vu4_A 262 WTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEESSCCS
T ss_pred CEEEEEEccCCC
Confidence 999999998764
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.7e-30 Score=248.00 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=168.3
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EeecCCCceeEEEEEeCC--------CCCeEEEEEC
Q 010883 127 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSP--------DQRHLVYASM 196 (498)
Q Consensus 127 l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~v~~~~~sp--------~~~~l~~~s~ 196 (498)
...|...+....+++++.+||+|+.|++|+|||+.++..... .....+|...|++++|+| |+++||+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 345666677777888899999999999999999998855433 234678999999999998 8899999999
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEE----
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLR---- 271 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~---- 271 (498)
|++|+|||+.++....... +|..+|.+++|+|++. +|++|+.|+.|++||+.+++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~----------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGY----------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp TSEEEEEEEETTEEEEEEE----------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred CCeEEEEECCCCceeeeec----------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence 9999999997765432221 3555899999999874 799999999999999988754322
Q ss_pred ---------------------EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEE
Q 010883 272 ---------------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 330 (498)
Q Consensus 272 ---------------------~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~ 330 (498)
..+|...+.++.|+++++..|++++.|+++++||+. .......+..|...+..+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------C
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEE
Confidence 235778899999988899999999999999999997 4444444444444333332
Q ss_pred ------------------EcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCc
Q 010883 331 ------------------SRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 390 (498)
Q Consensus 331 ------------------~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
++| ++.++++|+.||.|++||+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---------------------------------- 350 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---------------------------------- 350 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT----------------------------------
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc----------------------------------
Confidence 222 34466788899999999998742
Q ss_pred eEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883 391 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 434 (498)
.+.....|.. . ..+++|+|||++||+++.+| +.+|.+
T Consensus 351 ~~~~~~~~~~--~----V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 351 SNSIPIQLGM--P----IVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCEEEEECSS--C----EEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEEecCCCC--c----EEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3333333332 1 23447788999999998776 666654
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-30 Score=241.28 Aligned_cols=234 Identities=8% Similarity=0.012 Sum_probs=180.2
Q ss_pred EEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010883 182 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 261 (498)
Q Consensus 182 ~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vw 261 (498)
..+.+++++|++|+.||.|++||+.+++...... ...|.++.|+|+ +++++.|+.|++|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 4456788999999999999999999887654433 115777788887 9999999999999
Q ss_pred ECC---------CCeeeEEEe-ccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEE
Q 010883 262 DLE---------ANKLSLRIL-AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF 328 (498)
Q Consensus 262 d~~---------~~~~~~~~~-~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~ 328 (498)
+.. +++.+..+. .|...|.+++|+ + ++++|++++.||+|++||++ .+....... .|...|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~----~~~~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYE----DDSQYIVHSAKSDVEYSS 175 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESS----SSCEEEEECCCSSCCCCE
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECC----CCcEEEEEecCCCCceEE
Confidence 665 445444444 677899999998 6 88999999999999999998 666655553 45558999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEE
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRC 407 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 407 (498)
++|+|++.+|++|+.||.|++||+++.... ...+.. |... +
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---------------------------------~~~~~~~h~~~--v--- 217 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPDQA---------------------------------SSRFPVDEEAK--I--- 217 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTTSC---------------------------------CEECCCCTTSC--E---
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCCCC---------------------------------ccEEeccCCCC--E---
Confidence 999999999999999999999999984321 134444 4422 2
Q ss_pred EeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEecc---CCCCee--eeEEcCCCCeEEEEeC-CCcEEEecCCCCCC
Q 010883 408 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVR--DCSWHPSQPMLVSSSW-DGDVVRWEFPGNGE 481 (498)
Q Consensus 408 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~l~~sp~~~~l~s~~~-Dg~i~iw~~~~~~~ 481 (498)
.+.+|+|++.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|++++|++++. |+.|++|++.....
T Consensus 218 -~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 218 -KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp -EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred -EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 2336677999999999 55999999999877655543 445555 5999999999999998 99999999976543
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=240.18 Aligned_cols=287 Identities=12% Similarity=0.043 Sum_probs=214.2
Q ss_pred CCceEEEE---EcCCCCEEEEEE--------------CCCeEEEEECC--CC--eEEEEEeecCCCceeEEEEEeCCCCC
Q 010883 131 TSRAYVSQ---FSADGSLFVAGF--------------QASQIRIYDVE--RG--WKIQKDILAKSLRWTVTDTSLSPDQR 189 (498)
Q Consensus 131 ~~~v~~~~---~s~dg~~la~~~--------------~dg~i~vw~~~--~~--~~~~~~~~~~~~~~~v~~~~~sp~~~ 189 (498)
...++.++ |+|+++.++..+ .++.+.||.++ ++ ..+... ..+ ..+.+++|+|++.
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~-~~~~~~~~s~~~~ 135 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF---KTG-FQPKSVRFIDNTR 135 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE---ECS-SCBCCCEESSSSE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE---cCC-CCceEEEEeCCCe
Confidence 44567777 777776665432 23323455443 34 222221 122 2466899999777
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 269 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 269 (498)
++++++.++.|++||+.+++.......... .+|...|.+++|+++++++++++.|+.|++||+.+++.+
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKY-----------KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHHH-----------HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCcccc-----------cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 888888889999999998876543322111 146668999999999999999999999999999999998
Q ss_pred EEEeccCCCeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe------
Q 010883 270 LRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG------ 342 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~------ 342 (498)
..+..|...+.+++|+ +++..+ ++++.|+.|++||++ .++.+..+..+ ..+.+++|+|++++|++++
T Consensus 205 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~----~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 205 ATVDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRK----TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp EEEECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTT
T ss_pred EEEcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECC----CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCcc
Confidence 8888899999999998 666666 556689999999997 66666666654 5689999999999999888
Q ss_pred --CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEE
Q 010883 343 --KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 420 (498)
Q Consensus 343 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 420 (498)
.|+.|++||+++. +.+..+ .+. .....++|+|+++.+
T Consensus 279 ~~~dg~i~~~d~~~~----------------------------------~~~~~~-~~~------~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 279 ESGGGRLGIYSMDKE----------------------------------KLIDTI-GPP------GNKRHIVSGNTENKI 317 (433)
T ss_dssp CSCCEEEEEEETTTT----------------------------------EEEEEE-EEE------ECEEEEEECSSTTEE
T ss_pred ccCCCeEEEEECCCC----------------------------------cEEeec-cCC------CCcceEEECCCCCEE
Confidence 4889999999863 222222 111 112234677788655
Q ss_pred -EEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeC---------------CCcEEEecCCCCC
Q 010883 421 -YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW---------------DGDVVRWEFPGNG 480 (498)
Q Consensus 421 -~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~---------------Dg~i~iw~~~~~~ 480 (498)
++++.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.++.
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 666889999999999999888876 6788999999999998888876 5799999997654
No 124
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.5e-28 Score=230.17 Aligned_cols=228 Identities=13% Similarity=0.134 Sum_probs=185.2
Q ss_pred ccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE------EEEEeecCCCceeEEEEEeCCC--CCeEEEE
Q 010883 125 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLRWTVTDTSLSPD--QRHLVYA 194 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~--dg~~la~~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~ 194 (498)
..+.+|...|++++|+| |+++|++|+.||.|++||+.++.. .........|...|.+++|+|+ +++|+++
T Consensus 51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe
Confidence 45578999999999999 699999999999999999987621 1223344577889999999999 9999999
Q ss_pred ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCee--e
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANKL--S 269 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~dg~i~vwd~~~~~~--~ 269 (498)
+.|+.|++||+.+++............... ....+|...+.+++|+|+ +..|++++.++.+.+|+...++. +
T Consensus 131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLS---IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp ETTCEEEEEECSSTTCTTCCEEEEEEESCS---CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCCcEEEecCCChHHhccccccccccccc---cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 999999999999887655444332222111 122356778999999997 89999999999998888887765 5
Q ss_pred EEEeccCCCeeEEEEeCCCC----CEEEEeeCCCeEEEEcCccccC----------------------------------
Q 010883 270 LRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNV---------------------------------- 311 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~----~~l~s~s~dg~i~vwd~~~~~~---------------------------------- 311 (498)
..+.+|...|++++|+ +++ ++|++|+.||.|++||++....
T Consensus 208 ~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 6677899999999998 555 7999999999999999973210
Q ss_pred --------CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 312 --------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 312 --------~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
....+..+.+|...|++++|+|++++|++++.||.|++||+....
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 125667788899999999999999999999999999999998743
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=6.8e-28 Score=232.60 Aligned_cols=283 Identities=14% Similarity=0.083 Sum_probs=210.0
Q ss_pred CCceEEEEEcCCCC-EEEEEE----CCC----eEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCC-------------
Q 010883 131 TSRAYVSQFSADGS-LFVAGF----QAS----QIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP------------- 186 (498)
Q Consensus 131 ~~~v~~~~~s~dg~-~la~~~----~dg----~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp------------- 186 (498)
...+...+|++.|. ++++|+ .|| .|++||+ .+++.+... ...+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-SYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-EEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-EEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 35788888999884 666776 467 8999999 888655332 2234555566666654
Q ss_pred -CCCeEEEEECC------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---
Q 010883 187 -DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--- 256 (498)
Q Consensus 187 -~~~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg--- 256 (498)
.+..+++++.+ +.|++||+.++....+. +|...+.+++|+|||+.|++++.++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~-----------------~~~~~v~~~~~Spdg~~la~~s~~~~~~ 203 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH-----------------RSPQPLMSPAWSPDGSKLAYVTFESGRS 203 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE-----------------EESSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe-----------------CCCCcceeeEEcCCCCEEEEEEecCCCc
Confidence 25667766654 79999999764432221 2445899999999999999999875
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCe--EEEEcCccccCCCceeEEeccccccEEEEEEcC
Q 010883 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 333 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 333 (498)
.|++||+.+++.. .+..|...+.+++|+ |+++.|+ +++.++. |++||+. .++ ...+..|...+.+++|+|
T Consensus 204 ~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 204 ALVIQTLANGAVR-QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEEEETTTCCEE-EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----TCC-EEECCCCSSCEEEEEECT
T ss_pred EEEEEECCCCcEE-EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECC----CCC-EEeCcCCCCcccceEECC
Confidence 9999999998874 566888899999998 7787666 6666654 9999986 443 467778888999999999
Q ss_pred CCCEEEEEeC-CC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 334 DGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 334 ~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
||++|++++. ++ .|.+||+.+.. ...+..+.. ....
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~~------~~~~ 315 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------PQRITWEGS------QNQD 315 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSC-----------------------------------CEECCCSSS------EEEE
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCC-----------------------------------EEEEecCCC------cccC
Confidence 9999998876 44 57777887632 111112211 1234
Q ss_pred cccCCCCcEEEEEecC---CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC---cEEEecCCCCCC
Q 010883 411 PVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGNGE 481 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg---~i~iw~~~~~~~ 481 (498)
++|+|||++|++++.+ ..|++||+.+++.. .+..|. .+.+++|+|+|++|++++.|+ .|++||+.+...
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~ 390 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 390 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence 5778899999988875 58999999988874 455554 899999999999999888877 799999876543
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=255.93 Aligned_cols=216 Identities=16% Similarity=0.217 Sum_probs=180.1
Q ss_pred CccccCCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC--CCeEEEEECCCe
Q 010883 124 PWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPI 199 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~s~d~~ 199 (498)
...+.+|.++|++++|+|+ +++|++|+.||.|++||+.++.. ........|...|++++|+|+ ++++++++.||.
T Consensus 46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 4567889999999999998 99999999999999999998742 233345678889999999999 999999999999
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCC
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-------------~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
|++||+.++........ .+|...|.+++|+| ++.+|++|+.||.|++||+.++
T Consensus 125 I~vwdl~~~~~~~~~~~--------------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 125 VSVVEFKENGTTSPIII--------------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp EEEEECCSSSCCCCEEE--------------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred EEEEEeecCCCcceeEe--------------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 99999988744322221 14666899999999 5899999999999999999877
Q ss_pred ----eeeEEEeccCCCeeEEEEeCCC---CCEEEEeeCCCeEEEEcCccccCC-CceeEEeccccccEEEEEEcCCCCEE
Q 010883 267 ----KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYL 338 (498)
Q Consensus 267 ----~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l 338 (498)
.....+.+|...|.+++|+ ++ +.+|++|+.||.|++||++..... .........|...|++++|+|++++|
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 269 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE
T ss_pred cccceeeeeecCCCCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE
Confidence 5556777899999999998 55 899999999999999999733111 11333445688899999999999999
Q ss_pred EEEeCCCcEEEEeCCCC
Q 010883 339 ISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 339 ~s~~~dg~i~iwd~~~~ 355 (498)
++++.||.|++||++..
T Consensus 270 ~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 270 ALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEECSSSCEECCBCCSS
T ss_pred EEEcCCCEEEEEecCCC
Confidence 99999999999999863
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=6e-27 Score=232.80 Aligned_cols=278 Identities=14% Similarity=0.086 Sum_probs=215.9
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC--CCCceecccc
Q 010883 138 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV--GSGTMESLAN 215 (498)
Q Consensus 138 ~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~--~~~~~~~~~~ 215 (498)
+|+|++.++++++.|++|.+||..+++.+..+.. ++ .+..++|+||+++|++++.|+.|.+||+ .+++......
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 3889999999999999999999999877655432 33 2889999999999999999999999999 6666543322
Q ss_pred ccccccCccccccCCCCceecEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCeeeEEEec----------cC-CCe
Q 010883 216 VTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HT-SDV 279 (498)
Q Consensus 216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~----~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~----------~~-~~v 279 (498)
. ...+..++|+| ||++|++++. +++|.+||..+++++..+.. |. ..+
T Consensus 220 ~-----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 220 I-----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp C-----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred c-----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence 1 12578999999 9999999884 89999999999998888764 22 378
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE--EeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMS 356 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 356 (498)
..+.+++.++.++++...++.|.+||+. ..+.+. .+ .+...+..+.|+|++++|++++ .+++|.+||+.+.
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~----~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg- 356 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYK----DIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR- 356 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECT----TSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEec----CCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-
Confidence 8999986677788888899999999997 322222 33 3556678899999999876554 5889999999873
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEcc----CceeEEEEEEEeccccCCC-CcEEEEEe-cCCeEE
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG----HSVLRTLIRCHFSPVYSTG-QKYIYTGS-HDSCVY 430 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~-~~~l~~g~-~dg~i~ 430 (498)
+.+..+.. |... ... + ++|+ +.+++++. .|++|.
T Consensus 357 ---------------------------------~l~~~i~~g~~ph~g~--g~~--~---~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 357 ---------------------------------RLSALVDVGKTPHPGR--GAN--F---VHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp ---------------------------------EEEEEEECSSSBCCTT--CEE--E---EETTTEEEEEEEBSSSSEEE
T ss_pred ---------------------------------eEEEeeccCCCCCCCC--Ccc--c---CCCCCccEEEeccCCCceEE
Confidence 33444432 2110 011 1 2345 66666665 589999
Q ss_pred EEECCC-------CcEEEEeccCCCCeeeeEEcCCCCeEEEEe-------CCCcEEEecCCCCCCC
Q 010883 431 VYDLVS-------GEQVAALKYHTSPVRDCSWHPSQPMLVSSS-------WDGDVVRWEFPGNGEA 482 (498)
Q Consensus 431 iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~-------~Dg~i~iw~~~~~~~~ 482 (498)
+||+.+ .+++.++..|.+.+..++++|++++|++++ .+++|.+||+.+.+..
T Consensus 397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 999998 899999999998899999999999999987 3789999999988754
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2e-27 Score=214.82 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=143.8
Q ss_pred CCceEEEEEcCC----CCEEEEEEC--------------------CCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeC
Q 010883 131 TSRAYVSQFSAD----GSLFVAGFQ--------------------ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLS 185 (498)
Q Consensus 131 ~~~v~~~~~s~d----g~~la~~~~--------------------dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~s 185 (498)
...|.+++|+|| ++++++++. |+.|++|++.. |+.+... ..|...++.++|+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~---~~~~~~v~~l~fs 187 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ---FLMPPEETILTFA 187 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE---EECCCSSCEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee---ccCCCceeeEEee
Confidence 446788888889 888888664 56666666633 3322221 1333355566666
Q ss_pred C---CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE------------E
Q 010883 186 P---DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL------------V 250 (498)
Q Consensus 186 p---~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l------------~ 250 (498)
| ++.+|++++.|++|+|||+.+++....+.... .+...+.+++|+|+|.++ +
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-------------SYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC-------------cceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 6 56789999999999999999998766543111 122368888999999876 5
Q ss_pred EEeCCCeEEEEECCCCeeeEEE-----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccccc
Q 010883 251 AGSSDDCIYVYDLEANKLSLRI-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 325 (498)
Q Consensus 251 ~g~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 325 (498)
+|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+. .++.+.++.+|...
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~----tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLL----LGQCTALLPPVSDQ 327 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETT----TCSEEEEECCC--C
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECC----CCcEEEEecCCCCC
Confidence 6788999999999999887655 2566555555553 7789999999999999998 88999999999876
Q ss_pred EE-EEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 326 IT-FIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 326 v~-~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
+. .++|+|||++|++|+.|++|+|||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 55 5899999999999999999999996
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=1.9e-26 Score=240.18 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=209.2
Q ss_pred CCceEEEEEcCCCCEEEEEEC-CC-----eEEEEECCCCeEEEEEeecCCCc----------------------eeEEEE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQ-AS-----QIRIYDVERGWKIQKDILAKSLR----------------------WTVTDT 182 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v~~~ 182 (498)
...|.+++|||||++|++++. |+ .|++||+.+++..... ....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 8999999988554332 222222 348899
Q ss_pred EeCCCCCeEEEEECCCeEEEEECCCC---ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEE
Q 010883 183 SLSPDQRHLVYASMSPIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 259 (498)
Q Consensus 183 ~~sp~~~~l~~~s~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~ 259 (498)
+|+|||++|++++. +.|++||+.++ ....+. .|...+.+++|+|||++|++++ ++.|+
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-----------------HGEGFATDAKLSPKGGFVSFIR-GRNLW 175 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-----------------CSSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-----------------cCCcccccccCCCCCCEEEEEe-CCcEE
Confidence 99999999999986 89999999887 432221 2334799999999999999987 46899
Q ss_pred EEECCCCeeeEEEeccCCC----------------eeEEEEeCCCCCEEEEeeCCC------------------------
Q 010883 260 VYDLEANKLSLRILAHTSD----------------VNTVCFGDESGHLIYSGSDDN------------------------ 299 (498)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~s~dg------------------------ 299 (498)
+||+.+++.......+... +..++|+ +++++|++++.|+
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 9999988765443333322 4789998 7888888887665
Q ss_pred ---------eEEEEcCccccCC-CceeEEec--cccccEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCCCccccc
Q 010883 300 ---------LCKVWDRRCLNVK-GKPAGVLM--GHLEGITFIDSRGDGRYLISNGK-----DQAIKLWDIRKMSSNASCN 362 (498)
Q Consensus 300 ---------~i~vwd~~~~~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~ 362 (498)
.|.+||+. . ++...... .|...+..++| |||++|++++. +..|++||+.+..
T Consensus 255 ~~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------ 323 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------ 323 (741)
T ss_dssp BTTSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------
T ss_pred CCCCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------
Confidence 78899986 4 44333332 47778999999 99999987654 5679999998732
Q ss_pred cCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECC-CCcEEE
Q 010883 363 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVA 441 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~ 441 (498)
....+..+.. ........+.|+|||+++++++.||.++||.+. .+. ..
T Consensus 324 ----------------------------~~~~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 324 ----------------------------QRVLAHETSP--TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp ----------------------------EEEEEEEECS--SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred ----------------------------eEEEEEcCCC--CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 2222221110 000011356788999999999999987777665 455 77
Q ss_pred EeccCCCCeeee-EEcCCCCeEE-EEeCCC--cEEEecCCCC
Q 010883 442 ALKYHTSPVRDC-SWHPSQPMLV-SSSWDG--DVVRWEFPGN 479 (498)
Q Consensus 442 ~~~~h~~~v~~l-~~sp~~~~l~-s~~~Dg--~i~iw~~~~~ 479 (498)
.+..|...|..+ .|+|+++.|+ +++.|+ .+++|++...
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence 888888888887 5999999765 455555 8999998653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.8e-25 Score=215.61 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=199.6
Q ss_pred cccCCCCceEEEEEcC--------------CCCEEEEEECC------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeC
Q 010883 126 PVDQTTSRAYVSQFSA--------------DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 185 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~--------------dg~~la~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s 185 (498)
.+.+|...+..+++++ .+..++.++.+ +.|++||++.+. ...+ ..|...|.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l---~~~~~~v~~~~~S 187 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV---HRSPQPLMSPAWS 187 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE---EEESSCEEEEEEC
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE---eCCCCcceeeEEc
Confidence 3567777777777765 26667766654 799999998542 2222 2355689999999
Q ss_pred CCCCeEEEEECCC---eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCC--eEE
Q 010883 186 PDQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDD--CIY 259 (498)
Q Consensus 186 p~~~~l~~~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg--~i~ 259 (498)
|||++|++++.++ .|++||+.+++...+.. |...+.+++|+|||+.|+ +++.++ .|+
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-----------------~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-----------------CCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 9999999999875 99999999887643221 334799999999999888 555554 499
Q ss_pred EEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC-CC--eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCC
Q 010883 260 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 336 (498)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 336 (498)
+||+.+++. ..+..|...+.+++|+ ++++.|++++. ++ .|.+||+. .+. ...+..+...+..++|+|+|+
T Consensus 251 ~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~ 323 (415)
T 2hqs_A 251 VMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGK 323 (415)
T ss_dssp EEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSS
T ss_pred EEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCC
Confidence 999998876 5677888999999998 78888887776 45 67777875 333 445556777899999999999
Q ss_pred EEEEEeCC---CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 337 YLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 337 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|++++.+ ..|++||+.+.. ...+..+. ....++|
T Consensus 324 ~l~~~~~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~-------~~~~~~~ 361 (415)
T 2hqs_A 324 FMVMVSSNGGQQHIAKQDLATGG-----------------------------------VQVLSSTF-------LDETPSL 361 (415)
T ss_dssp EEEEEEECSSCEEEEEEETTTCC-----------------------------------EEECCCSS-------SCEEEEE
T ss_pred EEEEEECcCCceEEEEEECCCCC-----------------------------------EEEecCCC-------CcCCeEE
Confidence 99988764 589999998732 22222222 1234578
Q ss_pred CCCCcEEEEEecCC---eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC
Q 010883 414 STGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 460 (498)
Q Consensus 414 s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 460 (498)
+|||++|++++.++ .|++||+. +.....+..|.+.|.+++|+|.-.
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred cCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 88999999988877 89999986 556778889999999999999754
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.6e-24 Score=215.45 Aligned_cols=299 Identities=12% Similarity=0.066 Sum_probs=217.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCC----CCCeEEEEEC-CCeEEEEECC
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP----DQRHLVYASM-SPIVHIVDVG 206 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~s~-d~~i~iwd~~ 206 (498)
+.+++|+|||++|++++.|+.|++||+ .+++.+..+. +...+..++|+| ||++|++++. +++|.+||..
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 899999999999999999999999999 7776555433 223689999999 9999999885 8999999999
Q ss_pred CCceeccccccccccCccccccCCCCce-ecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeE--EEeccCCCeeEE
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTV 282 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~ 282 (498)
+++............ ....-|. ..+.++.++|++.. +++...++.|.+||+.+.+.+. .+ .+...+.++
T Consensus 257 t~~~~~~i~~~g~~~------~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~ 329 (543)
T 1nir_A 257 TLEPKQIVSTRGMTV------DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDG 329 (543)
T ss_dssp TCCEEEEEECCEECS------SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCE
T ss_pred ccccceeecccCccc------CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCc
Confidence 887765544321000 0000022 26889999997765 5566678999999998866543 33 466778899
Q ss_pred EEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEecc----ccccEEEEEEcCC-CCEEEEEe-CCCcEEEEeCCCC
Q 010883 283 CFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGD-GRYLISNG-KDQAIKLWDIRKM 355 (498)
Q Consensus 283 ~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~-~~~l~s~~-~dg~i~iwd~~~~ 355 (498)
.|+ +++++|+++ ..+++|.+||+. .++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+.
T Consensus 330 ~~s-pdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 330 GWD-SSHRYFMTAANNSNKVAVIDSK----DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp EEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred eEC-CCCCEEEEEecCCCeEEEEECC----CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 998 778866554 568999999998 6777666653 54433333 4677 66667765 5899999999863
Q ss_pred CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-------cCCe
Q 010883 356 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-------HDSC 428 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-------~dg~ 428 (498)
..... ..+.+.++..+.... +...++|++++|++++ .+++
T Consensus 404 ~~~~~---------------------------~~~~v~~l~~~g~~~------~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 404 NHPQY---------------------------AWKKVAELQGQGGGS------LFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCTTT---------------------------BTSEEEEEECSCSCC------CCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCchh---------------------------cCeEEEEEEcCCCCc------eEEEcCCCCCcEEEecCCCCCcccCce
Confidence 21100 025667776664221 2336788999999987 3679
Q ss_pred EEEEECCCCcEE-EEe--------ccCCCCeeeeEEcCCCCeEEEEe-----CCCcEEEecCCCCCCC
Q 010883 429 VYVYDLVSGEQV-AAL--------KYHTSPVRDCSWHPSQPMLVSSS-----WDGDVVRWEFPGNGEA 482 (498)
Q Consensus 429 i~iwd~~~~~~~-~~~--------~~h~~~v~~l~~sp~~~~l~s~~-----~Dg~i~iw~~~~~~~~ 482 (498)
|.+||+.+++.. ..+ ..+...+..+.|+|+|+.|+++. .|+.|.|||..+.+..
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 999999998876 443 34577899999999999887663 4799999999887543
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=7.3e-24 Score=200.24 Aligned_cols=281 Identities=12% Similarity=0.056 Sum_probs=210.1
Q ss_pred CCCceEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEE
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQ-------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVH 201 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~ 201 (498)
....+..++|+|+|+++++++. ++.|.+||..+++........ ..+..++|+|+++++++++ .++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCCEEE
Confidence 3456889999999999888874 568999999998766654332 2467899999999666554 478999
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
+||..+++............. .......+.+++|+|+|+++++++ .++.|.+||+.+++.+..+..+...+
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRT-------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCC-------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred EEeCCCCeeEEEEecCCCccc-------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 999999876554433211000 001111378899999999887776 47889999999999888886566678
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----ccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 354 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~ 354 (498)
.+++|+ ++++++++++.++.|.+||+. .++....+.. +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus 188 ~~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 188 TGLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred ceEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 999998 788899999999999999997 6666655543 4556888999999998776665 48999999977
Q ss_pred CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEE
Q 010883 355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYD 433 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd 433 (498)
. +.+..+..... ..++|+|+++++++++ .++.|.+||
T Consensus 263 ~----------------------------------~~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 263 G----------------------------------NILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp C----------------------------------CEEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred C----------------------------------cEEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 3 23333332221 2346778999776666 689999999
Q ss_pred CCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 434 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 434 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
+.+++.+..+..+ ..+.+++|+|++++|+.+..++
T Consensus 301 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 301 AKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999998888744 4689999999999777766554
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=7.1e-24 Score=198.53 Aligned_cols=281 Identities=13% Similarity=0.116 Sum_probs=191.2
Q ss_pred EEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCce-ecc
Q 010883 137 SQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM-ESL 213 (498)
Q Consensus 137 ~~~s~dg~~-la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~-~~~ 213 (498)
..|.+++++ +++++.++.|.+||+.+++....... +...+ .++|+|+++++++++. ++.|.+||..+++. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 346666665 66777899999999999866554432 23355 9999999997777766 88999999998875 222
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 290 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (498)
... +..+..+++|+|+|++|+++..++ .|.+||+.+++.+..+.. ...+.+++|+ ++++
T Consensus 79 ~~~----------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~ 140 (331)
T 3u4y_A 79 IQE----------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGN 140 (331)
T ss_dssp EEE----------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSS
T ss_pred ccc----------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCC
Confidence 211 112344499999999999555553 899999999998777654 4556999998 5665
Q ss_pred -EEEEeeCCCe-EEEEcCccccCCCcee---EEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccC
Q 010883 291 -LIYSGSDDNL-CKVWDRRCLNVKGKPA---GVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLG 364 (498)
Q Consensus 291 -~l~s~s~dg~-i~vwd~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 364 (498)
++++...++. |.+|++... +... .........+..++|+|+|++++++ ..++.|.+||+.+....
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~------ 211 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDAD---GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI------ 211 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTT---CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC------
T ss_pred EEEEEecCCCceEEEEEECCC---CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc------
Confidence 5555566688 999998621 1111 1122334568899999999966554 46889999999864320
Q ss_pred cccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcE--EE
Q 010883 365 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQ--VA 441 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~--~~ 441 (498)
+.+..+..... ...++|+|||++|++++ .++.|.+||+.+++. +.
T Consensus 212 -------------------------~~~~~~~~~~~-------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 212 -------------------------TLLNAVGTNNL-------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp -------------------------EEEEEEECSSC-------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred -------------------------ceeeeccCCCC-------CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence 11333332211 12346788999877765 477899999999877 44
Q ss_pred EeccC----CCC---eeeeEEcCCCCeEEEEe-CCCcEEEecCCCCC
Q 010883 442 ALKYH----TSP---VRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 480 (498)
Q Consensus 442 ~~~~h----~~~---v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~~~ 480 (498)
.+..+ ..+ ...++|+|++++|++++ .++.|.+||+....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 260 SFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 44322 222 24589999999876555 56799999997643
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=5.8e-25 Score=206.84 Aligned_cols=277 Identities=13% Similarity=0.160 Sum_probs=185.9
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-CeEEEEECC--CCceecccccccccc
Q 010883 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVG--SGTMESLANVTEIHD 221 (498)
Q Consensus 145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~~i~iwd~~--~~~~~~~~~~~~~~~ 221 (498)
++++++.|+.|++|++........... ..+...+.+++|+|++++|++++.+ +.|.+|++. +++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 82 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--- 82 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---
Confidence 444557799999999963211111111 2244478899999999999998886 899999997 555432222111
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECC---CCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE---ANKLSLRILAHTSDVNTVCFGDESGHLIYSGS- 296 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s- 296 (498)
+ ..+.+++|+|+|++|++++. ++.|.+||+. ..+....+. ....+.+++|+ ++++++++++
T Consensus 83 -----------~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s-~dg~~l~~~~~ 148 (343)
T 1ri6_A 83 -----------P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANIS-PDNRTLWVPAL 148 (343)
T ss_dssp -----------S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEEC-TTSSEEEEEEG
T ss_pred -----------C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEEC-CCCCEEEEecC
Confidence 1 15778999999998877765 8899999994 333444443 34568899998 7777777776
Q ss_pred CCCeEEEEcCccccCC-CceeE----Eecc-ccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCccccc
Q 010883 297 DDNLCKVWDRRCLNVK-GKPAG----VLMG-HLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYE 369 (498)
Q Consensus 297 ~dg~i~vwd~~~~~~~-~~~~~----~~~~-~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 369 (498)
.++.|.+||+. . ++... .+.. ....+..++|+|+++++++++ .++.|.+||+.......
T Consensus 149 ~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~---------- 214 (343)
T 1ri6_A 149 KQDRICLFTVS----DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI---------- 214 (343)
T ss_dssp GGTEEEEEEEC----TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC----------
T ss_pred CCCEEEEEEec----CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE----------
Confidence 89999999997 3 32221 2222 334788999999999776554 78999999996421110
Q ss_pred ccceeecCCcCcccccCCCCceEEEEc----cCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECC----CCcEE
Q 010883 370 WDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV----SGEQV 440 (498)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~----~~~~~ 440 (498)
....... ++...... ..++|+|++++|+++. .++.|++||+. +.+.+
T Consensus 215 --------------------~~~~~~~~~~~~~~~~~~~----~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 215 --------------------ECVQTLDMMPENFSDTRWA----ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp --------------------EEEEEEECSCTTCCSCCCE----EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred --------------------EEEeeccccCccccccCCc----cceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 0011111 00101111 1236777998887554 78999999998 23455
Q ss_pred EEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCC
Q 010883 441 AALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 478 (498)
Q Consensus 441 ~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~ 478 (498)
..+..+.. +.+++|+|++++|++++ .|+.|.+|+++.
T Consensus 271 ~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 271 GFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 55655544 89999999999888887 689999996653
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=3.8e-26 Score=237.34 Aligned_cols=288 Identities=11% Similarity=0.060 Sum_probs=201.4
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEeCCCCCeEEEEECC---------CeE
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMS---------PIV 200 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~s~d---------~~i 200 (498)
.+.+++|+|||+++++ +.||+|++||+.+++..... ..+.. .|.+++|||||++|++++.+ +.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~---~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI---EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE---CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe---ccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 4677899999998776 68999999999988544322 23332 48999999999999999874 788
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV- 279 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v- 279 (498)
.+||+.+++...+... .+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+
T Consensus 94 ~~~d~~~~~~~~l~~~--------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPP--------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI 158 (723)
T ss_dssp EEEESSSCCCEECCCT--------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred EEEECCCCceEeccCC--------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence 9999998875322211 123335788999999999999886 789999999988765554444433
Q ss_pred -----------------eEEEEeCCCCCEEEEeeCCC----------------------------------eEEEEcCcc
Q 010883 280 -----------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRC 308 (498)
Q Consensus 280 -----------------~~~~~~~~~~~~l~s~s~dg----------------------------------~i~vwd~~~ 308 (498)
.+++|+ |+++.|++++.|+ .|++||+.
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~- 236 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN- 236 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-
T ss_pred ECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-
Confidence 789998 7889888887553 79999987
Q ss_pred ccCCCceeEEeccc------cccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883 309 LNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 378 (498)
Q Consensus 309 ~~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
.+.....+..+ ...+..++|+|||++|++... +..|++||+.+..
T Consensus 237 ---~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---------------------- 291 (723)
T 1xfd_A 237 ---GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---------------------- 291 (723)
T ss_dssp ---SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC----------------------
T ss_pred ---CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc----------------------
Confidence 44444445443 567899999999998876643 3579999987732
Q ss_pred cCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEE--ecCC------eEEEEE-CCCCc--EEEEeccC
Q 010883 379 PQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTG--SHDS------CVYVYD-LVSGE--QVAALKYH 446 (498)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg------~i~iwd-~~~~~--~~~~~~~h 446 (498)
....+..+ ..... .....+.|||||+.|+.. ..++ .|++|| ...++ +...+..+
T Consensus 292 ------------~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 357 (723)
T 1xfd_A 292 ------------CTKKHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG 357 (723)
T ss_dssp ------------EEEEEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred ------------ceEEEEeccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence 22221111 10000 001256789999977754 4566 577788 34444 14455544
Q ss_pred CCCeee-eEEcCCCCeEEEEeCC---CcEEEecCCCCC
Q 010883 447 TSPVRD-CSWHPSQPMLVSSSWD---GDVVRWEFPGNG 480 (498)
Q Consensus 447 ~~~v~~-l~~sp~~~~l~s~~~D---g~i~iw~~~~~~ 480 (498)
...+.. ++|+|||+.|+..+.+ +.+++|++....
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 445554 6999999988766655 789999987543
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=8.2e-25 Score=201.05 Aligned_cols=256 Identities=15% Similarity=0.139 Sum_probs=187.6
Q ss_pred EECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC-CceeccccccccccCccccc
Q 010883 149 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSA 227 (498)
Q Consensus 149 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 227 (498)
++.|+.|++||+.+++.... ..|...|.+++|+|++++|++++ ++.|.+||+.+ ++........
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~---------- 82 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVV----WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF---------- 82 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEE----EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT----------
T ss_pred CCcceeEEEEeCCCCceeee----ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc----------
Confidence 45689999999998854422 23455899999999999999987 78999999988 7654333211
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE-EeeCCCeEE
Q 010883 228 ADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCK 302 (498)
Q Consensus 228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~ 302 (498)
+...+.+++|+|+|++|++++. ...|.+|++.+++. ..+.. ...+..++|+ ++++.|+ +++.++.++
T Consensus 83 -----~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~s-pdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 83 -----ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-NLPSYWHGWS-PDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp -----CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-SSSEEEEEEC-TTSSEEEEEEEETTEEE
T ss_pred -----ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec-CCCccceEEC-CCCCEEEEEECCCCceE
Confidence 1236788999999999999983 24556666666553 34433 3458999998 6677665 788999999
Q ss_pred EEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 303 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 303 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
+|+++. .......+..+...+.+++|+|++++|++++ .++.+++|++....
T Consensus 155 l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~------------------------- 206 (297)
T 2ojh_A 155 IYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG------------------------- 206 (297)
T ss_dssp EEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------------------------
T ss_pred EEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------------------------
Confidence 999752 2344566677888999999999999888766 58999999886311
Q ss_pred ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-----------CeEEEEECCCCcE--EEEeccCCC
Q 010883 382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYVYDLVSGEQ--VAALKYHTS 448 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~--~~~~~~h~~ 448 (498)
..+..+..+.. ....+.|+|+|++|++++.+ +.|++||+.+++. +..+.+|..
T Consensus 207 --------~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 207 --------SSVERITDSAY------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG 272 (297)
T ss_dssp --------SCEEECCCCSE------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred --------CCcEEEecCCc------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence 22333333331 22345778899999988876 5699999988865 444557888
Q ss_pred CeeeeEEcCCCCeEEEEeCCC
Q 010883 449 PVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 449 ~v~~l~~sp~~~~l~s~~~Dg 469 (498)
.+.+++|+|+++.|++++.|.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 999999999999888887653
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=3.5e-24 Score=230.71 Aligned_cols=304 Identities=12% Similarity=0.134 Sum_probs=216.3
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEeecCCCceeE-------EEEEeCCCC
Q 010883 122 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTV-------TDTSLSPDQ 188 (498)
Q Consensus 122 ~~~~~l~~h~~~v~~~~~s~dg~~la~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v-------~~~~~sp~~ 188 (498)
.....+..|...+.+++|||||++||+++.+ ..|++|++.++. .. ....|...+ ..++|+|||
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTC
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCC
Confidence 3456778899999999999999999988643 379999999874 22 334566677 899999999
Q ss_pred CeEEEEECC------CeEEEEECCCCceecccccccc-------------------------------------------
Q 010883 189 RHLVYASMS------PIVHIVDVGSGTMESLANVTEI------------------------------------------- 219 (498)
Q Consensus 189 ~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~------------------------------------------- 219 (498)
+++++++.+ ..|.+|++.+++...+......
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~ 198 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK 198 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence 966666644 3688888877654322111000
Q ss_pred --------------ccCccccccC------------------CCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 010883 220 --------------HDGLDFSAAD------------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 267 (498)
Q Consensus 220 --------------~~~~~~~~~~------------------~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 267 (498)
.+.+-+.... ...|. .+...+|+|||+.|+++ .++.|++||+...+
T Consensus 199 l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK 276 (1045)
T ss_dssp EECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred CcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE
Confidence 0000000000 00111 24466888888877777 47788888884443
Q ss_pred eeEEEec-----------cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc-cEEEEEEcCCC
Q 010883 268 LSLRILA-----------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDG 335 (498)
Q Consensus 268 ~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~ 335 (498)
. ..+.. |...+.+++|+||+++.|++++ ++.|.+|++. .+. ...+..|.. .+..++|+ ||
T Consensus 277 l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~----~~~-~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 277 I-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS----GTY-VLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp E-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----SSB-EEECSCCSCEEEEEECSS-SE
T ss_pred e-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----CCc-eEEccCCCcceEEeeeEc-CC
Confidence 3 34433 3346899999735677777776 8899999986 333 344666777 89999999 99
Q ss_pred CEEEEEeCCCcEE-EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 336 RYLISNGKDQAIK-LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 336 ~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
+.|++++.++.+. +||+.... ...+.++.. . ...++||
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~-----------------------------------~~~l~~~~~--~----~~~~~~S 387 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGK-----------------------------------AEKFEENLG--N----VFAMGVD 387 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCC-----------------------------------EEECCCCCC--S----EEEEEEC
T ss_pred CeEEEEECCCceEEEEECCCCC-----------------------------------ceEecCCcc--c----eeeeEEC
Confidence 9999998888888 88987521 222222221 1 1334678
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC----------cEEEecCCCCC
Q 010883 415 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG----------DVVRWEFPGNG 480 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg----------~i~iw~~~~~~ 480 (498)
|||++|++++.++.|++||+.+++....+..|...+.+++|+|||++|++++.++ .|++||+.++.
T Consensus 388 pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 388 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 8999999999999999999999998888878999999999999999998887654 89999998754
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1.1e-23 Score=218.13 Aligned_cols=293 Identities=11% Similarity=0.059 Sum_probs=201.8
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC----
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS---- 207 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~---- 207 (498)
..|.+++|||| +.++.+. ++.|++||+.+++.... . .+...+.+++|+|||++|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~---~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-F---DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-E---CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-c---CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 57999999999 6666654 59999999998844322 1 233468889999999999985 679999999988
Q ss_pred -Cceeccccccccc--cCccccccCCCCceecEEEEEEcCCCCEEEEEe-------------------------------
Q 010883 208 -GTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------------------- 253 (498)
Q Consensus 208 -~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------------------------------- 253 (498)
++........... .+.. ....+...+.+++|+|||++|++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQA----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp CCCCEESCSCCBTTEEESSC----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred CCCcEEeccCCCCCeEcccc----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 6654432211100 0000 0000111357899999999999987
Q ss_pred --CCCeEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCCceeEEec-c-c
Q 010883 254 --SDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLM-G-H 322 (498)
Q Consensus 254 --~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~-~-~ 322 (498)
.+..|++||+.+++...... .|...+.+++|+ ++++.|++++.++ .|++||+. .+.....+. . +
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETD 305 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEEC
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccC
Confidence 44679999999987644332 466789999998 7899888887775 89999997 442333222 1 1
Q ss_pred cc---cEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc
Q 010883 323 LE---GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 397 (498)
Q Consensus 323 ~~---~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (498)
.. .+..+.|+| ||++++++..|+.++||++... +..+..+..
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~---------------------------------~~~~~~l~~ 352 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT---------------------------------GRLIRQVTK 352 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT---------------------------------SCEEEECCC
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC---------------------------------CCEEEecCC
Confidence 11 246789999 9999999999999999987621 133333433
Q ss_pred CceeEEEEEEEeccccCCCCcEEEEEec-CC----eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC----
Q 010883 398 HSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---- 468 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D---- 468 (498)
+.... .. .+.|+|+++.|+.++. ++ .|+.||+.+++ ...+. |...+.+++|+|||++|+.+..+
T Consensus 353 ~~~~v--~~---~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p 425 (706)
T 2z3z_A 353 GEWEV--TN---FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVP 425 (706)
T ss_dssp SSSCE--EE---EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCS
T ss_pred CCeEE--Ee---eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCC
Confidence 32111 11 1367789988776655 44 67888887776 34444 67789999999999988776443
Q ss_pred CcEEEecCCCCC
Q 010883 469 GDVVRWEFPGNG 480 (498)
Q Consensus 469 g~i~iw~~~~~~ 480 (498)
+.|++||+.++.
T Consensus 426 ~~i~l~d~~~~~ 437 (706)
T 2z3z_A 426 RKVTVTNIGKGS 437 (706)
T ss_dssp CEEEEEESSSCE
T ss_pred cEEEEEECCCCe
Confidence 469999987764
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=5.5e-23 Score=192.77 Aligned_cols=274 Identities=12% Similarity=0.073 Sum_probs=195.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-eEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceecccccccccc
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
++|++++.++.|.+||+.+++.+...... +.. .+..++|+|++++++++ ..++.|.+||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--
Confidence 47899999999999999998666544322 111 36789999999876554 5578999999998876544332110
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 289 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 289 (498)
..|...+.+++|+|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++|+ +++
T Consensus 78 ---------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg 146 (337)
T 1pby_B 78 ---------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDG 146 (337)
T ss_dssp ---------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTS
T ss_pred ---------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCC
Confidence 01223466799999999998886 579999999999888776654 4567889998 777
Q ss_pred CEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC------------------------
Q 010883 290 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ------------------------ 345 (498)
Q Consensus 290 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg------------------------ 345 (498)
++|+++ ++.|.+||+. .++....+..+... ..+.|+|++..++..+..+
T Consensus 147 ~~l~~~--~~~i~~~d~~----~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
T 1pby_B 147 SKLYGL--GRDLHVMDPE----AGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219 (337)
T ss_dssp SCEEEE--SSSEEEEETT----TTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred CEEEEe--CCeEEEEECC----CCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence 777777 6899999997 66666555543310 1237899988776554433
Q ss_pred cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec
Q 010883 346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 425 (498)
Q Consensus 346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 425 (498)
.|.+||+.+.... ...+..+. . ....++|+||+++++++
T Consensus 220 ~v~~~d~~~~~~~---------------------------------~~~~~~~~--~----~~~~~~~s~dg~~l~~~-- 258 (337)
T 1pby_B 220 GLLTMDLETGEMA---------------------------------MREVRIMD--V----FYFSTAVNPAKTRAFGA-- 258 (337)
T ss_dssp EEEEEETTTCCEE---------------------------------EEEEEECS--S----CEEEEEECTTSSEEEEE--
T ss_pred ceEEEeCCCCCce---------------------------------EeecCCCC--C----ceeeEEECCCCCEEEEe--
Confidence 3567777652210 01111111 0 11234678899999988
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.|+.|.+||+.+++.
T Consensus 259 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 259 YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 799999999999988887643 4678999999999999999999999999987654
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=2.5e-23 Score=210.34 Aligned_cols=276 Identities=14% Similarity=0.036 Sum_probs=191.1
Q ss_pred CCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG 206 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~ 206 (498)
..+|++++|+|||++||+++. ||+++||+++++.. .. ....+...+..++|+|| +++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~--lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VK--LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EE--CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Ee--eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 99999999976633 22 22333357999999999 77777765 4445565543
Q ss_pred C---CceeccccccccccCccccccCCCCceecEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEE
Q 010883 207 S---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 282 (498)
Q Consensus 207 ~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 282 (498)
. +....+... + .+...+|+|+|+. +++.+.++.+.+||+.+++..... .+.. .++
T Consensus 97 ~~~~g~~~~l~~~----------------~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~--~~~ 155 (582)
T 3o4h_A 97 TSRPGEEQRLEAV----------------K--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG--FGF 155 (582)
T ss_dssp TTSTTCCEECTTS----------------C--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--CEE
T ss_pred ccCCCccccccCC----------------C--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--ceE
Confidence 2 221111110 0 2335577887753 333334445669999988765444 3333 889
Q ss_pred EEeCCCCCEEEEeeCC----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCC
Q 010883 283 CFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMS 356 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 356 (498)
+|+ |++++|++++.+ +.|++||+. .++ ...+..|...+..++|+|||+.|+++..++ .|++||+.+..
T Consensus 156 ~~s-pDG~~la~~~~~~~~~~~i~~~d~~----~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 156 VSD-IRGDLIAGLGFFGGGRVSLFTSNLS----SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEE-EETTEEEEEEEEETTEEEEEEEETT----TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred EEC-CCCCEEEEEEEcCCCCeEEEEEcCC----CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 998 789999988877 789999986 433 346778888899999999999999888888 89999998733
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE--EEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI--RCHFSPVYSTGQKYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 434 (498)
. . .+..+....... .....+.|||||.++++++.++.+++|++
T Consensus 230 ~----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 V----------------------------------E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp E----------------------------------E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred E----------------------------------E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 2 1 222221100000 00011238889999999999999999999
Q ss_pred CCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCc---EEEecCCC
Q 010883 435 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPG 478 (498)
Q Consensus 435 ~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~---i~iw~~~~ 478 (498)
++.+. .+.+.|.+++|+ +++++++++.+.. |.+|+..+
T Consensus 275 --g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 --GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred --CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 66554 344678999999 9999988887744 77777653
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=7.2e-23 Score=220.56 Aligned_cols=304 Identities=12% Similarity=0.030 Sum_probs=221.0
Q ss_pred CCCceEEEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-eEEEEEeCCCCCeEEEEECCCeEE-EEECC
Q 010883 130 TTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVH-IVDVG 206 (498)
Q Consensus 130 h~~~v~~~~~s-~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~s~d~~i~-iwd~~ 206 (498)
|...+.+++|| |||++||+++ ++.|.+|++.++.... ...+.. .+..++|+ ||+.|++++.++.+. +|++.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence 44579999999 9999999887 7899999998874332 234555 79999999 999999999888888 99998
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 286 (498)
+++...+. +|...+..++|+|||++|++++.++.|++||+.+++....+..|...+.+++|+
T Consensus 368 ~~~~~~l~-----------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S- 429 (1045)
T 1k32_A 368 TGKAEKFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS- 429 (1045)
T ss_dssp TCCEEECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-
T ss_pred CCCceEec-----------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-
Confidence 76543322 233478999999999999999999999999999998877777899999999998
Q ss_pred CCCCEEEEeeCCC----------eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 287 ESGHLIYSGSDDN----------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 287 ~~~~~l~s~s~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
|++++|++++.++ .|++||+. .++ ...+..|...+..++|+|||++|++++.++...+|+.....
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME----GRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETT----TTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECC----CCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 7889888887654 89999996 444 67778888889999999999999999999888999876432
Q ss_pred CccccccCcccccccceeecCCcCcccc--------------cCCC--CceEEEEccCceeEEEEEEEeccccCCCCcEE
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDL--------------KHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 420 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 420 (498)
.... . ......+.+.+..... .... ...+..+..+... .....++|||.++
T Consensus 505 ~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~------~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 505 FSFE--V-----VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD------YRMIIPLESSILI 571 (1045)
T ss_dssp EECC--S-----CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC------EEEEEECSSEEEE
T ss_pred cccc--c-----CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCC------hhheEEcCCCeEE
Confidence 1100 0 0000011111111000 0000 0122223222211 1223567799877
Q ss_pred EE-------------EecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 421 YT-------------GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 421 ~~-------------g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
++ ......|++||+.+++..... ..+.+++|||||+.|++++.| .|++||+..+.
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 75 123457999999888754333 568899999999999999866 89999998766
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=1.2e-22 Score=191.42 Aligned_cols=277 Identities=11% Similarity=0.045 Sum_probs=176.4
Q ss_pred CCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC---CCeEEEEECCCCceeccccccccccCcccc
Q 010883 152 ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFS 226 (498)
Q Consensus 152 dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (498)
++.|.+|.++ ++....... ..+...+..++|+|+|+ |++++. ++.|.+|++.+++.........
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-------- 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-------- 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE--------
T ss_pred CCCEEEEEEcCCCCeEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec--------
Confidence 4567777664 453322111 12223577899999999 555554 5899999997766433322111
Q ss_pred ccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-Ce--eeEEEec---------cCCCeeEEEEeCCCCCEEE
Q 010883 227 AADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NK--LSLRILA---------HTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 227 ~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~~l~ 293 (498)
+...+..++|+|+|++|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+ +++++++
T Consensus 84 ------~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v 156 (347)
T 3hfq_A 84 ------PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAV 156 (347)
T ss_dssp ------ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEE
T ss_pred ------CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEE
Confidence 222577899999999888888 679999999963 22 2233321 12347889998 6777777
Q ss_pred EeeCCCeEEEEcCccccCCCceeEEecc-ccccEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCCCccccccCccccccc
Q 010883 294 SGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 371 (498)
Q Consensus 294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 371 (498)
+...++.|.+|++.... .......+.. ....+..++|+|||++|++ +..++.|.+|++.......
T Consensus 157 ~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~------------ 223 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF------------ 223 (347)
T ss_dssp EETTTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE------------
T ss_pred EeCCCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce------------
Confidence 77778999999986111 1111222222 2236788999999996665 5567899999987421100
Q ss_pred ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE-EecCCeEEEEECCC---CcEEEEeccCC
Q 010883 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVS---GEQVAALKYHT 447 (498)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~---~~~~~~~~~h~ 447 (498)
..+..+...............++|+|||++|++ ...++.|.+|++.. .+.+..+..+.
T Consensus 224 ------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 285 (347)
T 3hfq_A 224 ------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG 285 (347)
T ss_dssp ------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS
T ss_pred ------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC
Confidence 011111111100000011233467889998855 45589999999973 35566666667
Q ss_pred CCeeeeEEcCCCCeEEEEeCC-CcEEEecCC
Q 010883 448 SPVRDCSWHPSQPMLVSSSWD-GDVVRWEFP 477 (498)
Q Consensus 448 ~~v~~l~~sp~~~~l~s~~~D-g~i~iw~~~ 477 (498)
..+.+++|+|||++|++++.+ +.|.+|+++
T Consensus 286 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 286 DFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 778999999999988888754 899999664
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.3e-23 Score=216.94 Aligned_cols=293 Identities=13% Similarity=0.100 Sum_probs=201.5
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
..|.+++|||||++|++++. +.|++||+.++. ... ....+...+..++|+|||++|++++ ++.|++||+.+++
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 34889999999999999986 899999998761 122 2234556799999999999999987 4689999999887
Q ss_pred eeccccccccc--cCc-cccccCCCCceecEEEEEEcCCCCEEEEEeCCC------------------------------
Q 010883 210 MESLANVTEIH--DGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------------------------------ 256 (498)
Q Consensus 210 ~~~~~~~~~~~--~~~-~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg------------------------------ 256 (498)
...+....... .+. .+... .....+.+++|+|||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~---~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVAD---EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHH---HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred EEEeccCCccceeccccceeee---eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 65443211100 000 00000 0001247799999999999987765
Q ss_pred ---eEEEEECCC-CeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeC-----CCeEEEEcCccccCCCceeEEeccccc-
Q 010883 257 ---CIYVYDLEA-NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLNVKGKPAGVLMGHLE- 324 (498)
Q Consensus 257 ---~i~vwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~- 324 (498)
.|++||+.+ ++...... .|...+..++| ++++.|++++. +..|++||+. .+.....+..+..
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPT 334 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSS
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCC
Confidence 799999988 77644332 47778999999 46777776543 5689999997 5665555554443
Q ss_pred ---cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee
Q 010883 325 ---GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 401 (498)
Q Consensus 325 ---~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (498)
.+..++|+|||+++++++.|+.++||.+.... . ...+..+...
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---------------------------------~-~~~l~~~~~~ 380 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---------------------------------K-AAALTHGNWS 380 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---------------------------------C-EEESCCSSSC
T ss_pred cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC---------------------------------C-eeeeeecceE
Confidence 44688999999999999999988888775311 2 2333333211
Q ss_pred EEEEEEEeccccCCCCcEEEE-EecCC--eEEEEECCC-CcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC----CcEEE
Q 010883 402 RTLIRCHFSPVYSTGQKYIYT-GSHDS--CVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD----GDVVR 473 (498)
Q Consensus 402 ~~~~~~~~~~~~s~~~~~l~~-g~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D----g~i~i 473 (498)
+... ..|+|+++.|+. ++.++ .++||++.. +..+..+.. ...+.+++|+||+++|+....+ +.+.+
T Consensus 381 --v~~~---~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l 454 (741)
T 2ecf_A 381 --VDEL---LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL 454 (741)
T ss_dssp --EEEE---EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred --EEeE---eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence 1111 136779987755 44455 899999864 555666665 6678999999999987766443 46888
Q ss_pred ecCCC
Q 010883 474 WEFPG 478 (498)
Q Consensus 474 w~~~~ 478 (498)
|+..+
T Consensus 455 ~~~~~ 459 (741)
T 2ecf_A 455 FRANG 459 (741)
T ss_dssp EETTS
T ss_pred EEcCC
Confidence 88754
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3e-23 Score=215.54 Aligned_cols=290 Identities=13% Similarity=0.089 Sum_probs=192.9
Q ss_pred ccccCCCC---ceEEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE
Q 010883 125 WPVDQTTS---RAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 192 (498)
Q Consensus 125 ~~l~~h~~---~v~~~~~s~dg~~la~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 192 (498)
..+..|.. .|.+++|||||++||+++.+ +.|.+||+.++.. ..+.....+...+..++|||||+.|+
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLI 129 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEE
Confidence 34444544 49999999999999999874 7888999998854 23333334444588999999999999
Q ss_pred EEECCCeEEEEECCCCceeccccccccccCccccccCCCCce---------ecEEEEEEcCCCCEEEEEeCCC-------
Q 010883 193 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD------- 256 (498)
Q Consensus 193 ~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~~~~s~~g~~l~~g~~dg------- 256 (498)
+++. +.|++|++.+++...+...... ...+ .++. ..+.+++|+|||+.|++++.++
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~--~~~~-----~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTGKE--GVIY-----NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCCBT--TTEE-----EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred EEEC-CeEEEEECCCCceEEEecCCCC--CceE-----CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence 9886 7999999998776543321110 0000 0000 1247899999999999987543
Q ss_pred ---------------------------eEEEEECCCCeeeEEEecc------CCCeeEEEEeCCCCCEEEEeeC----CC
Q 010883 257 ---------------------------CIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGSD----DN 299 (498)
Q Consensus 257 ---------------------------~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~s~----dg 299 (498)
.|++||+.+++....+..+ ...+..++|+ +++++|++.+. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEE
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe-CCCeEEEEEEcCCCCeE
Confidence 7999999998865666544 5678999998 78888876643 35
Q ss_pred eEEEEcCccccCCCceeEEeccc-cccE----EEEEEcCCCCEEEE--EeCCC------cEEEEeC-CCCCCccccccCc
Q 010883 300 LCKVWDRRCLNVKGKPAGVLMGH-LEGI----TFIDSRGDGRYLIS--NGKDQ------AIKLWDI-RKMSSNASCNLGF 365 (498)
Q Consensus 300 ~i~vwd~~~~~~~~~~~~~~~~~-~~~v----~~l~~~~~~~~l~s--~~~dg------~i~iwd~-~~~~~~~~~~~~~ 365 (498)
.|++||+. .++....+..+ ...+ ..++|+|||+.|+. +..++ .|.+||+ ......
T Consensus 281 ~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~------- 349 (723)
T 1xfd_A 281 ILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND------- 349 (723)
T ss_dssp EEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-------
T ss_pred EEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-------
Confidence 79999987 55555444332 3333 37899999997775 45666 4666773 321100
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEc-cCceeEEEEEEEeccccCCCCcEEEEEecC---CeEEEEECCCCc--E
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGE--Q 439 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~--~ 439 (498)
....+. ++.... ..+.|||||+.|+..+.+ +.++||++.... .
T Consensus 350 -------------------------~~~~l~~~~~~~~------~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 350 -------------------------NIQSITSGDWDVT------KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp -------------------------CCCBSCCSSSCEE------EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred -------------------------ceeEeecCCeEEE------eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 000111 111110 113678899999876655 789999986432 3
Q ss_pred EEEecc---CCCCeeeeEEcCCCCeEEEEe
Q 010883 440 VAALKY---HTSPVRDCSWHPSQPMLVSSS 466 (498)
Q Consensus 440 ~~~~~~---h~~~v~~l~~sp~~~~l~s~~ 466 (498)
...+.. |...+..++|+|||++|+...
T Consensus 399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 399 RQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 344443 667789999999999777653
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=3.8e-23 Score=214.05 Aligned_cols=282 Identities=12% Similarity=0.088 Sum_probs=194.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeecCCC--------------ceeEEEEEeCCCCCeEEEEECCC
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSL--------------RWTVTDTSLSPDQRHLVYASMSP 198 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~-~~~~~~~~~--------------~~~v~~~~~sp~~~~l~~~s~d~ 198 (498)
+..+.|+ |+.+++++.|+ | +||+.+++.+ ......... ...|.+++|+|| +.++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4446787 66777777787 8 9999998652 322221111 136999999999 6666664 59
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeeeEEEe
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRIL 273 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-----~~~~~~~~ 273 (498)
.|++||+.+++....... ...+.+++|+|||+.|+++ .++.|++||+.+ ++......
T Consensus 102 ~i~~~d~~~~~~~~l~~~-----------------~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDT-----------------NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp EEEEEETTTTEEEEEECC-----------------TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred EEEEEECCCCceEEccCC-----------------cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence 999999998875443221 1256778999999999985 679999999998 76654333
Q ss_pred ccCCC--------------eeEEEEeCCCCCEEEEee---------------------------------CCCeEEEEcC
Q 010883 274 AHTSD--------------VNTVCFGDESGHLIYSGS---------------------------------DDNLCKVWDR 306 (498)
Q Consensus 274 ~~~~~--------------v~~~~~~~~~~~~l~s~s---------------------------------~dg~i~vwd~ 306 (498)
.+... +.++.|+ |++++|++++ .+..|++||+
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred CCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 33332 4889998 8899998887 4468999999
Q ss_pred ccccCCCceeEEe--ccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCCCccccccCcccccccceeecCCc
Q 010883 307 RCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 379 (498)
Q Consensus 307 ~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (498)
. .+...... ..|...+..++|+|||+.|++++.++ .|++||+.+..
T Consensus 243 ~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~----------------------- 295 (706)
T 2z3z_A 243 A----TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR----------------------- 295 (706)
T ss_dssp T----TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----------------------
T ss_pred C----CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----------------------
Confidence 6 44433332 24667899999999999999887775 89999998731
Q ss_pred CcccccCCCCceEEEEccCceeEEEEEEEeccccCC--CCcEEEEEecCCeEEEEECC-CCcEEEEeccCCCCeee-eEE
Q 010883 380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST--GQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRD-CSW 455 (498)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-l~~ 455 (498)
....+...... ........+.|+| ||+++++++.|+.++||++. ++..+..+..|...+.+ ++|
T Consensus 296 -----------~~~~~~~~~~~-~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 296 -----------FVRTLFVETDK-HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp -----------EEEEEEEEECS-SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred -----------eeeEEEEccCC-CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 11111100000 0000113457899 99999999999999999876 67778888888888887 799
Q ss_pred cCCCCeEEEEeC-CC----cEEEecCCCC
Q 010883 456 HPSQPMLVSSSW-DG----DVVRWEFPGN 479 (498)
Q Consensus 456 sp~~~~l~s~~~-Dg----~i~iw~~~~~ 479 (498)
+|+++.|+.++. ++ .|..|++.++
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 999997766554 44 5666676554
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=6.8e-22 Score=185.81 Aligned_cols=277 Identities=14% Similarity=0.122 Sum_probs=181.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEECC-CeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD 204 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd 204 (498)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++...... ....+. .+..++|+|++++|++++. ++.|.+|+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-ESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-EEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc-ccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 456778899999999999988886 899999997 55322211 111222 6889999999998877765 88999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CeeeE----EEec-cCC
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLSL----RILA-HTS 277 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~-~~~~~----~~~~-~~~ 277 (498)
+..+.......... ....+.+++|+|+|++|++++ .++.|.+||+.+ ++... .+.. ...
T Consensus 113 ~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 113 LEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred CCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 95332211111110 111477899999999888887 889999999987 55432 2222 345
Q ss_pred CeeEEEEeCCCCCEEE-EeeCCCeEEEEcCccccCCCceeEEec---cc---cccEEEEEEcCCCCEEEE-EeCCCcEEE
Q 010883 278 DVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLM---GH---LEGITFIDSRGDGRYLIS-NGKDQAIKL 349 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~---~~~v~~l~~~~~~~~l~s-~~~dg~i~i 349 (498)
.+.+++|+ +++++++ ++..++.|.+||+.............. .. ...+..++|+|++++|++ +..++.|.+
T Consensus 179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 78899998 6777655 445889999999952111111122222 11 235678999999988874 447899999
Q ss_pred EeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCe
Q 010883 350 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSC 428 (498)
Q Consensus 350 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~ 428 (498)
||+...... ...+..+..+.. ...++|+|+|++|++++ .++.
T Consensus 258 ~d~~~~~~~------------------------------~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 258 FSVSEDGSV------------------------------LSKEGFQPTETQ-------PRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSCC------------------------------EEEEEEEECSSS-------CCCEEECTTSSEEEEECTTTCE
T ss_pred EEEcCCCCc------------------------------eEEeeeecCCCc-------cceEEECCCCCEEEEecCCCCe
Confidence 999731100 022222222221 12346788999988888 5899
Q ss_pred EEEEE--CCCCc--EEEEeccCCCCeeeeEEcCCCC
Q 010883 429 VYVYD--LVSGE--QVAALKYHTSPVRDCSWHPSQP 460 (498)
Q Consensus 429 i~iwd--~~~~~--~~~~~~~h~~~v~~l~~sp~~~ 460 (498)
|.+|+ ..+++ .+..+.. .....+++|.|+.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 99995 44654 3444443 24566778877544
No 147
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=5.4e-22 Score=190.07 Aligned_cols=291 Identities=15% Similarity=0.112 Sum_probs=194.1
Q ss_pred cccCCCCceEE-----EEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC
Q 010883 126 PVDQTTSRAYV-----SQFSADGSLFVAGFQ-AS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 197 (498)
Q Consensus 126 ~l~~h~~~v~~-----~~~s~dg~~la~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d 197 (498)
.+..|...... .+|||||++||.++. ++ .|.+||+.+++... ....+...+..+.|+||++.|++++.+
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 44455555555 789999999999887 66 48889998874432 233444444567899999999999999
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEE--EEEEcCCCCEEEEEe----------------------
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF--SLKFSTDGRELVAGS---------------------- 253 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s~~g~~l~~g~---------------------- 253 (498)
+.|++||+.+++...+..... ..+. ...+++++++++...
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~----------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPA----------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCT----------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred CeEEEEECCCCcceeeeechh----------------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 999999999987654433221 1222 234589999887432
Q ss_pred CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCC------CeEEEEcCccccCCCceeEEecccc--c
Q 010883 254 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHL--E 324 (498)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~--~ 324 (498)
.+..|++||+.+++. ..+..+...+..+.|+ | +++.|+....+ ..|.++|+. +.....+..+. .
T Consensus 166 ~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~~ 238 (388)
T 3pe7_A 166 PCCRLMRVDLKTGES-TVILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHAEGE 238 (388)
T ss_dssp CCEEEEEEETTTCCE-EEEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCCTTE
T ss_pred CcceEEEEECCCCce-EEeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCCCCc
Confidence 346899999999865 4455677789999999 6 78877776653 367777774 33344444444 3
Q ss_pred cEEEEEEcCCCCEEEEEeC-CC----cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc
Q 010883 325 GITFIDSRGDGRYLISNGK-DQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS 399 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (498)
.+..+.|+|||+.|+..+. ++ .|++||+.+... ..+..+.++.
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------------------------------~~l~~~~~~~ 286 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------------------------------RQLTSMPACS 286 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------------------------------EEEEEECCEE
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------------------------------EEEEcCCCce
Confidence 5778899999997765443 22 399999987431 1222222210
Q ss_pred eeEEEEEEEeccccCCCCcEEEEE---------ecCCeEEEEECCCCcEEEEeccCCC-----------CeeeeEEcCCC
Q 010883 400 VLRTLIRCHFSPVYSTGQKYIYTG---------SHDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQ 459 (498)
Q Consensus 400 ~~~~~~~~~~~~~~s~~~~~l~~g---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~sp~~ 459 (498)
..........|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+|||
T Consensus 287 ---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg 362 (388)
T 3pe7_A 287 ---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDD 362 (388)
T ss_dssp ---EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred ---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCC
Confidence 000001112578899888754 4466899999988765 44555555 57889999999
Q ss_pred CeEEEEe-CCCcEEEecCCC
Q 010883 460 PMLVSSS-WDGDVVRWEFPG 478 (498)
Q Consensus 460 ~~l~s~~-~Dg~i~iw~~~~ 478 (498)
+.|+.++ .+|...+|.++-
T Consensus 363 ~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp SEEEEEECTTSSCEEEEEEC
T ss_pred CEEEEEecCCCceeEEEEEC
Confidence 9777655 578777876653
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.6e-21 Score=187.20 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=155.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----------eEEEE--EeecCCCceeEEEEEeCCCCCeEE----EE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----------WKIQK--DILAKSLRWTVTDTSLSPDQRHLV----YA 194 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~----------~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~----~~ 194 (498)
...++.+++++++.++++++.++ |+||+...- ..+.. ......+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44689999999999999999887 889875311 00110 001112445799999999999999 67
Q ss_pred ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 273 (498)
+.|+.|+|||+.++.......... ........+|...|.+++|+|+ +.+|++++.||.|++||++++.......
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRP-----FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCC-----SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcce-----eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 889999999987541100000000 0001122357889999999997 8899999999999999999987776777
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------cccEEEEEEcCCCCEEEEEe-CCC
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------LEGITFIDSRGDGRYLISNG-KDQ 345 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~-~dg 345 (498)
.|...|.+++|+ +++++|++|+.||.|++||++ +.....+..| ...|.++.|++++.++++.+ .+|
T Consensus 190 ~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 190 PSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp CGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 899999999998 779999999999999999985 2333333332 34899999999887775433 343
Q ss_pred ------cEEEEeCCCC
Q 010883 346 ------AIKLWDIRKM 355 (498)
Q Consensus 346 ------~i~iwd~~~~ 355 (498)
.+++|++++.
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3899999874
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1e-21 Score=180.22 Aligned_cols=206 Identities=16% Similarity=0.200 Sum_probs=153.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC--CC--e
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SP--I 199 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~--d~--~ 199 (498)
..+..|...|.+++|+|||++|++++ ++.|++||+.+ +..... ....+...+.+++|+|++++|++++. ++ .
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 34566889999999999999999986 78999999998 643321 22223457889999999999999983 34 4
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCC-CeeeEEEeccCC
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEA-NKLSLRILAHTS 277 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~-~~~~~~~~~~~~ 277 (498)
|.+|+..++....... ...+.+++|+|+++.|+ ++..++.+.+|++.. ......+..+..
T Consensus 112 l~~~~~~~~~~~~~~~------------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 112 IYLLPSTGGTPRLMTK------------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp EEEEETTCCCCEECCS------------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred EEEEECCCCceEEeec------------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 5555555544322111 11488899999999887 677889889998532 233456667888
Q ss_pred CeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----------C
Q 010883 278 DVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----------Q 345 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----------g 345 (498)
.+.+++|+ +++++|+.++ .++.+++|++.. .......+..|...+..++|+|++++|++++.+ +
T Consensus 174 ~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 174 RNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CEEEEEEC-TTSSEEEEEECTTSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred ccccceEC-CCCCEEEEEecCCCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 99999998 6777776655 589999998752 344566777788889999999999999988765 5
Q ss_pred cEEEEeCCCC
Q 010883 346 AIKLWDIRKM 355 (498)
Q Consensus 346 ~i~iwd~~~~ 355 (498)
.|.+||+.+.
T Consensus 250 ~l~~~d~~~~ 259 (297)
T 2ojh_A 250 RVQLMDMDGG 259 (297)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEecCCC
Confidence 6999999763
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.2e-21 Score=184.58 Aligned_cols=282 Identities=13% Similarity=0.086 Sum_probs=183.9
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceeccc
Q 010883 136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~ 214 (498)
.+++++++.++++++.++.|.+||+.+++........ ....+..++|+|++++++++ ..++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4568889999999999999999999998665544322 11246789999999876554 46889999999988765443
Q ss_pred cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCee---eEEEeccCCCe
Q 010883 215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------DCIYVYDLEANKL---SLRILAHTSDV 279 (498)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------------g~i~vwd~~~~~~---~~~~~~~~~~v 279 (498)
...... ......+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+ .+...+
T Consensus 82 ~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 150 (349)
T 1jmx_B 82 NLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQV 150 (349)
T ss_dssp ESCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSC
T ss_pred Eccccc----------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcc
Confidence 321100 0012246789999999999998865 8999999988543 2333 344568
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc------------------------cEEEEEEcCCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE------------------------GITFIDSRGDG 335 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~ 335 (498)
.+++|+ ++++ +++++. .|.+||+. .++....+..+.. ....+++++++
T Consensus 151 ~~~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 151 YLMRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CCEEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cceeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 899998 6777 555543 49999997 5555555443210 23445565544
Q ss_pred CEEEEEeCC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 336 RYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 336 ~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
......... ..+..+|..+.. +..+..... .......+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~----~~~~~~~~~s 263 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGK-----------------------------------THTQEFADL----TELYFTGLRS 263 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCC-----------------------------------EEEEEEEEC----SSCEEEEEEC
T ss_pred cCCccccccceeEEEEeccCCc-----------------------------------EEecccccC----CCcceeeEec
Confidence 211100000 111123333211 111100000 0012344678
Q ss_pred C-CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 415 T-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 415 ~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
| ++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+
T Consensus 264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 8 99999988 88999999999998888763 3457899999999988888889999999997764
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=6.8e-21 Score=179.80 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=181.9
Q ss_pred eEEEEEeCCCCCeEEEEEC-------CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 178 TVTDTSLSPDQRHLVYASM-------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
.+..++|+|+++++++++. ++.|.+||..+++......... .+..++|+|+|++++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----------------~~~~~~~s~dg~~l~ 104 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-----------------KPFGATINNTTQTLW 104 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-----------------CCCSEEEETTTTEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-----------------CcceEEECCCCCEEE
Confidence 5788999999999888774 5689999999887655543211 356789999999665
Q ss_pred EE-eCCCeEEEEECCCCeeeEEEeccCCC---------eeEEEEeCCCCCEEEEee--CCCeEEEEcCccccCCCceeEE
Q 010883 251 AG-SSDDCIYVYDLEANKLSLRILAHTSD---------VNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGV 318 (498)
Q Consensus 251 ~g-~~dg~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~ 318 (498)
++ ..++.|.+||+.+++.+..+..+... +.+++|+ ++++.+++++ .++.|.+||+. .++.+..
T Consensus 105 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~ 179 (353)
T 3vgz_A 105 FGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG----NIKLKTA 179 (353)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT----TTEEEEE
T ss_pred EEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC----CCceEEE
Confidence 55 45799999999999988877654432 6889998 6777666665 47899999997 6777777
Q ss_pred eccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC
Q 010883 319 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 398 (498)
Q Consensus 319 ~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
+..+...+..++|+|++++|++++.++.|.+||+.+. +.+..+...
T Consensus 180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~----------------------------------~~~~~~~~~ 225 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN----------------------------------KILSRKKLL 225 (353)
T ss_dssp ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT----------------------------------EEEEEEECC
T ss_pred ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC----------------------------------eEEEEEEcC
Confidence 7656666889999999999999999999999999873 222222221
Q ss_pred c--eeEEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEe
Q 010883 399 S--VLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRW 474 (498)
Q Consensus 399 ~--~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw 474 (498)
. ..... ...+|+|+++++++++. ++.|++||+.+++.+..+.... ...++|+|++++++.++ .++.|.+|
T Consensus 226 ~~~~~~~~----~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 226 DDGKEHFF----INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp CSSSCCCE----EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCccc----ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEE
Confidence 0 00111 22356779998877765 4999999999999988887543 36799999999655554 78999999
Q ss_pred cCCCCCC
Q 010883 475 EFPGNGE 481 (498)
Q Consensus 475 ~~~~~~~ 481 (498)
|+.++..
T Consensus 300 d~~~~~~ 306 (353)
T 3vgz_A 300 DAKSYKV 306 (353)
T ss_dssp ETTTTEE
T ss_pred ECCCCeE
Confidence 9876643
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=7e-21 Score=178.09 Aligned_cols=271 Identities=9% Similarity=0.054 Sum_probs=174.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeE-EEEEeecCCCceeEEEEEeCCCCCeEEEEECCC---eEEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIV 203 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~-dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~---~i~iw 203 (498)
.+...+ +++|+|||++|++++. ++.|.+||+.++.. ..... .+..+..+++|+|++++|+++..++ .|.+|
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ---EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE---ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc---cCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 345556 9999999997776665 88999999998865 33222 2233444499999999999555442 89999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCe-EEEEECCCCeee----EEEeccCC
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDC-IYVYDLEANKLS----LRILAHTS 277 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~-i~vwd~~~~~~~----~~~~~~~~ 277 (498)
|+.+++........ ..+.+++|+|+|++|+++ ..++. |.+|++.....+ ........
T Consensus 114 d~~~~~~~~~~~~~-----------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 176 (331)
T 3u4y_A 114 SFLKNKFISTIPIP-----------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT 176 (331)
T ss_dssp ETTTTEEEEEEECC-----------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred ECCCCCeEEEEECC-----------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence 99988765443211 146899999999865554 55577 999998764433 12224456
Q ss_pred CeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCce---eEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 010883 278 DVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDI 352 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~ 352 (498)
.+..++|+ ++++++ +++..++.|.+||+. .++. +..+.. ...+..++|+|+|++|+++. .++.|.+||+
T Consensus 177 ~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 177 RPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp SEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred CccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 68999998 677754 555578999999997 4554 555553 36678899999999776554 5778999999
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCcee-EEEEEEEeccccCCCCcEEEEEec-CCeEE
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSH-DSCVY 430 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~ 430 (498)
.+.... .+..+...... .........++|+|||++|++++. ++.|.
T Consensus 251 ~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 298 (331)
T 3u4y_A 251 LSGTLS--------------------------------FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELK 298 (331)
T ss_dssp TTTEEE--------------------------------EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEE
T ss_pred CCCcee--------------------------------eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEE
Confidence 874320 01111111000 000000012368889998877665 56999
Q ss_pred EEECCCCcEEEEeccCCCCeeeeEEcCCC
Q 010883 431 VYDLVSGEQVAALKYHTSPVRDCSWHPSQ 459 (498)
Q Consensus 431 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 459 (498)
+||+.... +..+......-....++|+.
T Consensus 299 v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 299 VFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred EEEecCCc-ccceecccccCCeEEECCcc
Confidence 99997654 33443333322233444443
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=210.16 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=189.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce---eEEEEEeCCCCCeEEEEEC---------CCeEEEE
Q 010883 136 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASM---------SPIVHIV 203 (498)
Q Consensus 136 ~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~s~---------d~~i~iw 203 (498)
.++|+|||+++++ +.|+.|++||+.++...... ..+.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL---SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE---CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE---ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 6789999965555 46999999999988644322 22222 3889999999999999876 6899999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCCCe---
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDV--- 279 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~v--- 279 (498)
|+.+++......+. ..+.+++|+|||+.|+++. ++.|++||+.+++..... .++...|
T Consensus 96 d~~~g~~~~~~~l~-----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 96 DLSNGEFVRGNELP-----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp ETTTTEECCSSCCC-----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred ECCCCccccceecC-----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 99998762111111 1577899999999999886 789999999888764322 1222222
Q ss_pred --------------eEEEEeCCCCCEEEEeeCCC----------------------------------eEEEEcCccccC
Q 010883 280 --------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRCLNV 311 (498)
Q Consensus 280 --------------~~~~~~~~~~~~l~s~s~dg----------------------------------~i~vwd~~~~~~ 311 (498)
.+++|+ |+++.|++++.|. .|++||+.
T Consensus 158 ~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~---- 232 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT---- 232 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----
T ss_pred cccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----
Confidence 489998 8899999887652 78899986
Q ss_pred CCcee--------EEeccccccEEEEEEcCCCCEEEEEeCC----CcEEEEe----CCCCCCccccccCcccccccceee
Q 010883 312 KGKPA--------GVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWD----IRKMSSNASCNLGFRSYEWDYRWM 375 (498)
Q Consensus 312 ~~~~~--------~~~~~~~~~v~~l~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~ 375 (498)
.+... ..+.+|...+..++|+||++++++.... ..|.+|| +.+........
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~------------- 299 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE------------- 299 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE-------------
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe-------------
Confidence 33321 1234577889999999998777764432 2488888 65532211100
Q ss_pred cCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE--EecCC--eEEEEECCCCcEEEEeccCCCCee
Q 010883 376 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDS--CVYVYDLVSGEQVAALKYHTSPVR 451 (498)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~ 451 (498)
.....+...... .....+.|+|||+.|+. ...+| .|++||+.+++ ...+..+...+.
T Consensus 300 -----------------~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~ 360 (719)
T 1z68_A 300 -----------------HIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI 360 (719)
T ss_dssp -----------------EEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred -----------------cccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence 000111100000 00014578889996654 33454 67888887776 455666666788
Q ss_pred eeEEcCCCCeEEEEeCC-----CcEEEecCCC
Q 010883 452 DCSWHPSQPMLVSSSWD-----GDVVRWEFPG 478 (498)
Q Consensus 452 ~l~~sp~~~~l~s~~~D-----g~i~iw~~~~ 478 (498)
.+.++ +++.|+..+.+ +.+++|.+..
T Consensus 361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 88877 88877766654 8899998765
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=8.2e-21 Score=179.96 Aligned_cols=280 Identities=12% Similarity=0.102 Sum_probs=179.3
Q ss_pred CCCEEEEEE----CCCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC----CeEEEEECCC--Cc
Q 010883 142 DGSLFVAGF----QASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGS--GT 209 (498)
Q Consensus 142 dg~~la~~~----~dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d----~~i~iwd~~~--~~ 209 (498)
...++++|+ .++.|.+|.++ ++........ +...+..++|+|++++|++++.+ +.|.+|++.. ++
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 334566664 35689998764 4533222222 34467889999999999999886 7999998865 44
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEE---ec-----------
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRI---LA----------- 274 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~~~~~~---~~----------- 274 (498)
......... +...+..+++ ++++|++++ .++.|.+|++.....+..+ ..
T Consensus 89 ~~~~~~~~~--------------~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 89 LHLLNTQKT--------------MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEEC--------------SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred EEEeeEecc--------------CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 332222111 1124666777 788777776 5789999999754332111 11
Q ss_pred cCCCeeEEEEeCCCCCEEEE-eeCCCeEEEEcCccccCC--Cc-e------eEEeccccccEEEEEEcCCCCEEEEEe-C
Q 010883 275 HTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVK--GK-P------AGVLMGHLEGITFIDSRGDGRYLISNG-K 343 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~--~~-~------~~~~~~~~~~v~~l~~~~~~~~l~s~~-~ 343 (498)
+...+.+++|+ ++++++++ ...++.|.+|++...... .+ . ......+...+..++|+|||+++++++ .
T Consensus 153 ~~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 231 (361)
T 3scy_A 153 TMPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI 231 (361)
T ss_dssp SSCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred CCCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence 12345789998 77875554 445899999988632110 01 1 122233445678999999999887777 6
Q ss_pred CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcEEEE
Q 010883 344 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 344 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
++.|.+||+.+... ..+..+..... .... ..++|+|||++|++
T Consensus 232 ~~~v~v~~~~~g~~--------------------------------~~~~~~~~~~~~~~~~----~~i~~spdg~~l~v 275 (361)
T 3scy_A 232 GGTVIAFRYADGML--------------------------------DEIQTVAADTVNAQGS----GDIHLSPDGKYLYA 275 (361)
T ss_dssp TCEEEEEEEETTEE--------------------------------EEEEEEESCSSCCCCE----EEEEECTTSSEEEE
T ss_pred CCeEEEEEecCCce--------------------------------EEeEEEecCCCCCCCc----ccEEECCCCCEEEE
Confidence 89999999875211 11111111110 0011 23467889999977
Q ss_pred EecC--CeEEEEECC--CCc--EEEEeccCCCCeeeeEEcCCCCeEEEEe-CCCcEEEecCCC
Q 010883 423 GSHD--SCVYVYDLV--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 478 (498)
Q Consensus 423 g~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i~iw~~~~ 478 (498)
+..+ +.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++.|.+|+++.
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 7665 899999985 454 4445544 55788999999999888887 678999976653
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=2.2e-19 Score=170.11 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=179.3
Q ss_pred CCCceEEEEEcCCCCEEEEEECC----CeEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEE
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 203 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~d----g~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iw 203 (498)
+......++|+|||++|++++.+ +.|.+|+++.. ..+........+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999999876 79999988652 223332222223345777888 888888777 57899999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe-------ee------
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK-------LS------ 269 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~-------~~------ 269 (498)
++................+. .......+...+.+++|+|+|++|++++ .++.|.+|++.... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGS--GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCC--CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCC--CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99754332211111001110 0001112233578999999999776665 47899999887543 11
Q ss_pred EEEeccCCCeeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCce--eEEe---ccccccEEEEEEcCCCCEEEEEeC
Q 010883 270 LRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVL---MGHLEGITFIDSRGDGRYLISNGK 343 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~--~~~~---~~~~~~v~~l~~~~~~~~l~s~~~ 343 (498)
.....+...+..++|+ ++++++++++ .++.|.+||+. .+.. +..+ ..+......++|+|||++|+++..
T Consensus 204 ~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 1122445667899998 7888777666 68999999987 3322 2222 233345789999999999877665
Q ss_pred C--CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883 344 D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 344 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 421 (498)
+ +.|.+|++....... ..+..+.... ....++|+|||++|+
T Consensus 279 ~~~~~i~v~~~~~~~g~~------------------------------~~~~~~~~g~-------~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTL------------------------------TKVGYQLTGI-------HPRNFIITPNGKYLL 321 (361)
T ss_dssp SSSCEEEEEEECTTTCCE------------------------------EEEEEEECSS-------CCCEEEECTTSCEEE
T ss_pred CCCCEEEEEEEcCCCCcE------------------------------EEeeEecCCC-------CCceEEECCCCCEEE
Confidence 4 889999986311000 1122222100 012336788999999
Q ss_pred EEe-cCCeEEEE--ECCCCcEEEEec-cCCCCeeeeEEc
Q 010883 422 TGS-HDSCVYVY--DLVSGEQVAALK-YHTSPVRDCSWH 456 (498)
Q Consensus 422 ~g~-~dg~i~iw--d~~~~~~~~~~~-~h~~~v~~l~~s 456 (498)
+++ .++.|.+| |..+++...... .+...+.|+.|.
T Consensus 322 ~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 322 VACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 888 57899996 555677655432 345678888885
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.6e-20 Score=175.52 Aligned_cols=267 Identities=13% Similarity=0.146 Sum_probs=169.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEE
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVD 204 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd 204 (498)
.+......++|+|||+ |++++. ++.|.+|++.++.. ........+...+..++|+|++++|++++ .++.|.+|+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 3456677899999999 555443 68999999977642 22222122344688899999999999888 678999999
Q ss_pred CC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeE--EEec-cCCCe
Q 010883 205 VG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSL--RILA-HTSDV 279 (498)
Q Consensus 205 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~-~~~~~~--~~~~-~~~~v 279 (498)
+. ++.............+ +. ...+...+.+++|+|+|+++++...++.|.+|++. +++... .+.. ....+
T Consensus 115 ~~~~g~~~~~~~~~~~~~~----p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHG----PR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp ECTTSCEEEEEEEECCCCC----SS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred eCCCCCeeecceeecCCCC----CC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 95 3333222221110000 00 11123358899999999966666678899999998 454322 2222 23367
Q ss_pred eEEEEeCCCCCEEEE-eeCCCeEEEEcCccccCCCceeEEecccc------ccEEEEEEcCCCCEE-EEEeCCCcEEEEe
Q 010883 280 NTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYL-ISNGKDQAIKLWD 351 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~l-~s~~~dg~i~iwd 351 (498)
..++|+ ++++++++ +..++.|.+|++.........+..+.... ..+..++|+|||++| ++...++.|.+|+
T Consensus 190 ~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 190 RHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred ceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 889998 77875554 56789999999862110111222222222 348899999999987 4556689999999
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-CeEE
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVY 430 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~ 430 (498)
+..... ...+..+..+... ...++|+|||++|++++.+ +.|.
T Consensus 269 ~~~~g~-------------------------------~~~~~~~~~~~~~------~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 269 VTADGH-------------------------------LTLIQQISTEGDF------PRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp ECGGGC-------------------------------EEEEEEEECSSSC------CCEEEECTTSSEEEEEETTTTEEE
T ss_pred ECCCCc-------------------------------EEEeEEEecCCCC------cCeEEECCCCCEEEEEEcCCCcEE
Confidence 873110 0222222221110 1233678899999888765 8999
Q ss_pred EE--ECCCCcEE
Q 010883 431 VY--DLVSGEQV 440 (498)
Q Consensus 431 iw--d~~~~~~~ 440 (498)
+| |..+++..
T Consensus 312 v~~~d~~tg~l~ 323 (347)
T 3hfq_A 312 LYARDLTSGKLS 323 (347)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEeCCCCeEE
Confidence 99 55566654
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.6e-20 Score=175.89 Aligned_cols=247 Identities=14% Similarity=0.055 Sum_probs=176.1
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCC--CceeEEEEEeCCCCCeEEEEE------------CC
Q 010883 133 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYAS------------MS 197 (498)
Q Consensus 133 ~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~s------------~d 197 (498)
.+..++|+|||++++ ++..++.|.+||+.+++.+........ +...+..++|+|++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 477899999998765 455678999999998866554432210 122567899999999999886 57
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 277 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 277 (498)
+.|.+||+.+++........ ..+.+++|+|+|++|+++ ++.|++||+.+++....+..+..
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp CEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred ceEEEEECCCCcEEEEEeCC-----------------CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 99999999887765433221 146678999999988887 67899999999988777654431
Q ss_pred CeeEEEEeCCCCCEEEEee-CCC-----------------------eEEEEcCccccCCCce-eEEeccccccEEEEEEc
Q 010883 278 DVNTVCFGDESGHLIYSGS-DDN-----------------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSR 332 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s-~dg-----------------------~i~vwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~ 332 (498)
...+.|+ +++..++..+ .++ .|.+||+. .++. ...+..+...+..++|+
T Consensus 176 -~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 176 -EAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp -TTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEEEEC
T ss_pred -CCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC----CCCceEeecCCCCCceeeEEEC
Confidence 1123676 5555444433 333 46899987 4433 23344556678899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccc
Q 010883 333 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 412 (498)
Q Consensus 333 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (498)
|++++++++ ++.|.+||+.+. +.+..+..... ...++
T Consensus 250 ~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~-------~~~~~ 286 (337)
T 1pby_B 250 PAKTRAFGA--YNVLESFDLEKN----------------------------------ASIKRVPLPHS-------YYSVN 286 (337)
T ss_dssp TTSSEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC-------CCEEE
T ss_pred CCCCEEEEe--CCeEEEEECCCC----------------------------------cCcceecCCCc-------eeeEE
Confidence 999999888 789999999763 23333332211 12336
Q ss_pred cCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC
Q 010883 413 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 447 (498)
Q Consensus 413 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 447 (498)
|+|+|++|++++.++.|++||+.+++.+..+..+.
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 77899999999999999999999999988886543
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=3.7e-20 Score=175.58 Aligned_cols=289 Identities=13% Similarity=0.085 Sum_probs=180.8
Q ss_pred EEEEEECC--CeEEEEEC--CCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC-CCceecccccccc
Q 010883 145 LFVAGFQA--SQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEI 219 (498)
Q Consensus 145 ~la~~~~d--g~i~vw~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~-~~~~~~~~~~~~~ 219 (498)
+|++|+.. +.|.+|++ .++...............+..++|+|++++|++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~- 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI- 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-
Confidence 35566653 56887765 4553222111111222357789999999999998888 99999997 665433221110
Q ss_pred ccCccccccCCCCceecEEEEEEcCCCCE--EEEEe-------------CCCeEEEEECC-CCeeeEEEe----ccCCCe
Q 010883 220 HDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-------------SDDCIYVYDLE-ANKLSLRIL----AHTSDV 279 (498)
Q Consensus 220 ~~~~~~~~~~~~~h~~~i~~~~~s~~g~~--l~~g~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~v 279 (498)
. + .+.+++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+
T Consensus 82 -~----------g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~ 147 (365)
T 1jof_A 82 -G----------G---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI 147 (365)
T ss_dssp -C----------S---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred -C----------C---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence 0 0 1334789999994 44543 68999999997 455544333 245679
Q ss_pred eEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCce--eEEec--cccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 010883 280 NTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVLM--GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIR 353 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~--~~~~~--~~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~ 353 (498)
.+++|+ +++++|++++ .++.|++||+.. .++. +..+. .|...+..++|+|||++|++++. ++.|.+|++.
T Consensus 148 ~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 148 HGMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEC-CCCCEEEEEcCCCCEEEEEEECC---CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 999998 7888777765 468999999861 1222 22332 23567899999999999887775 6889999875
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEE---EEEEEeccc-cCCCCcEEEEEecCC-
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRT---LIRCHFSPV-YSTGQKYIYTGSHDS- 427 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~-~s~~~~~l~~g~~dg- 427 (498)
......... . +.+..+... ..... .......++ |+|||++|++++.+.
T Consensus 224 ~~~g~~~~~---------~-----------------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 224 PATHMPVYT---------H-----------------HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp TTTCCEEEE---------E-----------------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred CCCCcEEEc---------c-----------------ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 311000000 0 000000000 00000 000112346 788999988876532
Q ss_pred -----eEEEEECC-CCcEEE---EeccCCCCeeeeEEcC---CCCeEEEEeCC-CcEEEecCCCC
Q 010883 428 -----CVYVYDLV-SGEQVA---ALKYHTSPVRDCSWHP---SQPMLVSSSWD-GDVVRWEFPGN 479 (498)
Q Consensus 428 -----~i~iwd~~-~~~~~~---~~~~h~~~v~~l~~sp---~~~~l~s~~~D-g~i~iw~~~~~ 479 (498)
.|.+|++. +++... .+..+...+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 666543 2334555678899999 89999998864 89999998764
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=3.7e-21 Score=194.48 Aligned_cols=234 Identities=10% Similarity=0.058 Sum_probs=168.5
Q ss_pred ceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC
Q 010883 176 RWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 254 (498)
Q Consensus 176 ~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~ 254 (498)
..+|.+++|+|||+.||+++. ||+++||++.+++...+.. .+...+..++|+|| +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----------------~~~~~~~~~~~spd-~~l~~~~~ 83 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----------------EPINSVLDPHYGVG-RVILVRDV 83 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----------------SCCSEECEECTTCS-EEEEEEEC
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----------------ccccccccccCCCC-eEEEEecc
Confidence 347999999999999999887 9999999987766544332 12236889999999 77777765
Q ss_pred ---CCeEEEEECCC--CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 255 ---DDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 255 ---dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
+....+|.+.. ......+.. ...+...+|+|.....+++.+.++.+.+||+. .++..... .+.. .++
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~----~g~~~~l~-~~~~--~~~ 155 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALD----GGGLRELA-RLPG--FGF 155 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEE----TTEEEEEE-EESS--CEE
T ss_pred CCCCcceEEEEEeccCCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEcc----CCcEEEee-cCCC--ceE
Confidence 44445544432 211223332 23445678874444444555555555699986 44443333 3333 789
Q ss_pred EEcCCCCEEEEEeCC----CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883 330 DSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 405 (498)
Q Consensus 330 ~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
+|+|||++|++++.+ +.|++||+.+.. ...+..+...
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----------------------------------~~~l~~~~~~---- 196 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----------------------------------LRVFDSGEGS---- 196 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCC-----------------------------------CEEECCSSCE----
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----------------------------------ceEeecCCCc----
Confidence 999999999988877 789999988632 2233344321
Q ss_pred EEEeccccCCCCcEEEEEecCC--eEEEEECCCCcEEEEeccCCCCeeeeE--------EcCCCCeEEEEeCCCcEEEec
Q 010883 406 RCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCS--------WHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 406 ~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~--------~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
...++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.||.+++|+
T Consensus 197 --~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 197 --FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp --EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred --cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 25568899999999888888 8999999999888 7788888888888 999999999999999999999
Q ss_pred C
Q 010883 476 F 476 (498)
Q Consensus 476 ~ 476 (498)
+
T Consensus 274 ~ 274 (582)
T 3o4h_A 274 D 274 (582)
T ss_dssp T
T ss_pred E
Confidence 9
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=1.3e-20 Score=182.22 Aligned_cols=185 Identities=11% Similarity=0.047 Sum_probs=134.7
Q ss_pred CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCC
Q 010883 153 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 232 (498)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (498)
+.+++|+.... .....++.+++++++.++++++.++ +++|+...-...... .........+.......
T Consensus 23 ~~vri~~~~~~----------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (434)
T 2oit_A 23 KKVRIFDSPEE----------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP-GDDPNKIVDKVQGLLVP 90 (434)
T ss_dssp CEEECSCCCSS----------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT-TCCTTCEEECCCCEEEC
T ss_pred eeEEecCCccc----------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc-ccCcccccccCcccccc
Confidence 56888765321 1122578899999999999999887 889875421100000 00000000000000012
Q ss_pred ceecEEEEEEcCCCCEEE----EEeCCCeEEEEECCCC--------ee---eEEEeccCCCeeEEEEeCCCCCEEEEeeC
Q 010883 233 YSFGIFSLKFSTDGRELV----AGSSDDCIYVYDLEAN--------KL---SLRILAHTSDVNTVCFGDESGHLIYSGSD 297 (498)
Q Consensus 233 h~~~i~~~~~s~~g~~l~----~g~~dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 297 (498)
+...|.+++|+|+|++|+ +|+.|+.|++||+.++ +. ...+.+|...|.+++|+|.++++|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 445799999999999999 7888999999998764 22 33445799999999999655899999999
Q ss_pred CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 298 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 298 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
||+|++||++ .........+|...|.+++|+|+|++|++|+.||.|++||++
T Consensus 171 Dg~v~iwD~~----~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 171 DGSIAVLQVT----ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TSCEEEEEES----SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCeEEEEEcC----CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 9999999998 555566667789999999999999999999999999999997
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=198.09 Aligned_cols=289 Identities=11% Similarity=0.018 Sum_probs=184.7
Q ss_pred ceEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 133 RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
.|.+++|||||++||+++. ++.|++||+.+++.+... . ....+..++|||||+.|+++. ++.|++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-E---LPRPIQYLCWSPVGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-C---CCSSBCCEEECSSTTCEEEEE-TTEEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-e---cCcccccceECCCCCEEEEEE-CCeEEEE
Confidence 4889999999999998876 689999999988441101 1 123588899999999999986 7899999
Q ss_pred ECCCCceeccccccccccCccccccCCCCcee---------cEEEEEEcCCCCEEEEEeCCC------------------
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF---------GIFSLKFSTDGRELVAGSSDD------------------ 256 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~~s~~g~~l~~g~~dg------------------ 256 (498)
++.+++...+..... ....+ .|+.. ...+++|+|||++|++++.|.
T Consensus 136 ~~~~g~~~~l~~~~~--~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~ 208 (719)
T 1z68_A 136 QRPGDPPFQITFNGR--ENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR 208 (719)
T ss_dssp SSTTSCCEECCCCCB--TTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred eCCCCCcEEEecCCC--cCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence 998887644321110 00000 01111 125899999999999987652
Q ss_pred ----------------eEEEEECCCCeee--EE------EeccCCCeeEEEEeCCCCCEEEEeeCC----CeEEEEc---
Q 010883 257 ----------------CIYVYDLEANKLS--LR------ILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWD--- 305 (498)
Q Consensus 257 ----------------~i~vwd~~~~~~~--~~------~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~vwd--- 305 (498)
.|++||+.+++.. .. +..|...+..++|+ ++++++++.... ..|.+||
T Consensus 209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccC
Confidence 7899999987652 12 23577789999998 567777764432 2488889
Q ss_pred -CccccCCCceeEEe----ccccccEE-----EEEEcCCCCEEEE--EeCCC--cEEEEeCCCCCCccccccCccccccc
Q 010883 306 -RRCLNVKGKPAGVL----MGHLEGIT-----FIDSRGDGRYLIS--NGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWD 371 (498)
Q Consensus 306 -~~~~~~~~~~~~~~----~~~~~~v~-----~l~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 371 (498)
+. .++....+ ..|...+. .+.|+|||+.|+. ...++ .|.+||+....
T Consensus 288 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--------------- 348 (719)
T 1z68_A 288 DWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--------------- 348 (719)
T ss_dssp SSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------
T ss_pred CCC----CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------
Confidence 65 33333233 35566665 7899999996554 44555 46666765422
Q ss_pred ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----CCeEEEEECCC--Cc-EEEEe
Q 010883 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVS--GE-QVAAL 443 (498)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iwd~~~--~~-~~~~~ 443 (498)
...+..+... +... .++ +++.|+..+. ++.+++|.+.. +. ....+
T Consensus 349 --------------------~~~lt~~~~~--v~~~----~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 401 (719)
T 1z68_A 349 --------------------AIQITSGKWE--AINI----FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV 401 (719)
T ss_dssp --------------------CEECSCSSSC--EEEE----EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred --------------------eEecccCceE--EEEE----EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence 1112211110 1111 222 4555555544 47788887754 42 23344
Q ss_pred c----cCCCCeeeeEEcCCCCeEEE-EeCC--CcEEEecCCCCC
Q 010883 444 K----YHTSPVRDCSWHPSQPMLVS-SSWD--GDVVRWEFPGNG 480 (498)
Q Consensus 444 ~----~h~~~v~~l~~sp~~~~l~s-~~~D--g~i~iw~~~~~~ 480 (498)
. +|...+..+.|+|++++++. ++.+ ..+.+|++.+++
T Consensus 402 ~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 402 TCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp STTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred cCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 3 25667889999999997764 4333 468899886654
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=2.2e-20 Score=179.24 Aligned_cols=293 Identities=13% Similarity=0.062 Sum_probs=184.3
Q ss_pred CceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCC
Q 010883 132 SRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~ 208 (498)
..+..++|||||++||..... ..|.+|++.+++... . ..........+.|+|||++|++++.++.|.+|++.++
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l--~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-L--TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-C--CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-e--ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 336778999999998877553 368899998874322 1 2222222233789999999999999999999999988
Q ss_pred ceeccccccccc--cC--ccccccCCCCceecEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 209 TMESLANVTEIH--DG--LDFSAADDGGYSFGIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 209 ~~~~~~~~~~~~--~~--~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-----~~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
+...+....... .+ +.+.... ..-......+.|+|+++.++.. ..+..|++||+.+++... +..+...+
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-~~~~~~~~ 190 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCT-KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV-IHQDTAWL 190 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE-EEEESSCE
T ss_pred CcEEEEecccccCCCCCEEEeccCC-ccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe-eccCCccc
Confidence 754443321100 00 0000000 0000000013578888877654 356789999999887644 34677789
Q ss_pred eEEEEeCCCCCEEEEeeCC------CeEEEEcCccccCCCceeEEeccc--cccEEEEEEcCCCCEEEEEeCC-----Cc
Q 010883 280 NTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKD-----QA 346 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~d-----g~ 346 (498)
..+.|+|.++..|+..+.+ ..|.+||+. ... ...+..+ ...+..+.|+|||++|+..+.+ +.
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECC----CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 9999984367666655543 358888875 222 2333333 2357889999999988776544 44
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEEe-
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGS- 424 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~- 424 (498)
|++||+.+... ..+..+.+ . . +.|+| ||+++++++
T Consensus 266 l~~~d~~~g~~--------------------------------~~l~~~~~------~-~----~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 266 IYKANPETLEN--------------------------------EEVMVMPP------C-S----HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EEEECTTTCCE--------------------------------EEEEECCS------E-E----EEEECSSSSEEEEEEC
T ss_pred EEEEECCCCCe--------------------------------EEeeeCCC------C-C----CCccCCCCceEEEecC
Confidence 99999876321 11111111 0 0 46777 999888765
Q ss_pred ---------------cCCeEEEEECCCCcEEEEeccCCC-----------CeeeeEEcCCCCeEEEEeC-CCcEEEecCC
Q 010883 425 ---------------HDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQPMLVSSSW-DGDVVRWEFP 477 (498)
Q Consensus 425 ---------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~sp~~~~l~s~~~-Dg~i~iw~~~ 477 (498)
.++.|++||+.+++.. .+..+.. .+..++|+|+|+.|+.++. ++...+|.++
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887653 3444444 2677899999998877664 5666666654
Q ss_pred C
Q 010883 478 G 478 (498)
Q Consensus 478 ~ 478 (498)
.
T Consensus 382 ~ 382 (396)
T 3c5m_A 382 V 382 (396)
T ss_dssp C
T ss_pred E
Confidence 3
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=4.3e-19 Score=184.18 Aligned_cols=291 Identities=11% Similarity=0.079 Sum_probs=181.0
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCc---e--eEEEEEeCCCCCeEEEEECC---------C
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR---W--TVTDTSLSPDQRHLVYASMS---------P 198 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~--~v~~~~~sp~~~~l~~~s~d---------~ 198 (498)
....++|+|||++++++ |+.|++||+.++..... . ..+. . ....++|||||++|++++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-L--ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-E--CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-E--echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 45688999999999886 89999999999865432 2 2222 1 22458899999999998875 5
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE-eccCC
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS 277 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~ 277 (498)
.+.+||+.+++...+.. |...+..++|||||+.||.+. ++.|++||+.+++..+.. .++..
T Consensus 93 ~~~~~d~~~~~~~~l~~-----------------~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~ 154 (740)
T 4a5s_A 93 SYDIYDLNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED 154 (740)
T ss_dssp EEEEEETTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT
T ss_pred EEEEEECCCCcEEEccc-----------------CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc
Confidence 67799999987654322 233689999999999999885 679999999887753311 12222
Q ss_pred Ce-----------------eEEEEeCCCCCEEEEeeCCC------------------------------------eEEEE
Q 010883 278 DV-----------------NTVCFGDESGHLIYSGSDDN------------------------------------LCKVW 304 (498)
Q Consensus 278 ~v-----------------~~~~~~~~~~~~l~s~s~dg------------------------------------~i~vw 304 (498)
.+ ..+.|+ |+++.|+.++.|. .|++|
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 22 358898 8899888875322 47778
Q ss_pred cCccccCCCc--eeEEec------cccccEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCCCccccccCcccccccc
Q 010883 305 DRRCLNVKGK--PAGVLM------GHLEGITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDY 372 (498)
Q Consensus 305 d~~~~~~~~~--~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 372 (498)
|+.... .+. ....+. +|...+..++|+|||+.++.... +..|.+||+.+......+..
T Consensus 234 d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~--------- 303 (740)
T 4a5s_A 234 NTDSLS-SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV--------- 303 (740)
T ss_dssp ETTSCC-SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG---------
T ss_pred ECCCCC-CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE---------
Confidence 876200 031 222333 36777999999999997665432 33699999887541000000
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE-EEec-C--CeEEEEECCCCcEEEEeccCCC
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSH-D--SCVYVYDLVSGEQVAALKYHTS 448 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~-d--g~i~iwd~~~~~~~~~~~~h~~ 448 (498)
...+.. ..+...... .....|.|||||+.|+ ..+. + ..|++||+.+++... +.....
T Consensus 304 ----------------~~~l~~-~~~~~~v~~-~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~ 364 (740)
T 4a5s_A 304 ----------------ARQHIE-MSTTGWVGR-FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTW 364 (740)
T ss_dssp ----------------GGCEEE-ECSSSCSSS-SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSS
T ss_pred ----------------EEEeee-ccCCceEcc-CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCE
Confidence 000000 111100000 0012467899999877 6654 3 468999998776554 443455
Q ss_pred CeeeeEEcCCCCeEEEEeCC-----CcEEEecCC
Q 010883 449 PVRDCSWHPSQPMLVSSSWD-----GDVVRWEFP 477 (498)
Q Consensus 449 ~v~~l~~sp~~~~l~s~~~D-----g~i~iw~~~ 477 (498)
.|..+.+ +|++.|+..+.. +...||.++
T Consensus 365 ~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 365 EVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp CEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 5665542 446654444332 344555443
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=1.1e-18 Score=164.75 Aligned_cols=282 Identities=12% Similarity=0.026 Sum_probs=187.2
Q ss_pred CCCEEEEEE------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----------CCeEEEEEC
Q 010883 142 DGSLFVAGF------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDV 205 (498)
Q Consensus 142 dg~~la~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----------d~~i~iwd~ 205 (498)
+++++++.. .|+.|.+||..+++.+.... ....+ .++|+||+++++++.. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~---~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP---TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE---CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEec---CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555555543 36799999999987655432 22333 8999999999998863 568999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEE-EeccCCCeeEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDVNTV 282 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~ 282 (498)
.+.+............ .+......++|+|||++|+++.. ++.|.+||+.+++.+.. +. ... ...+
T Consensus 89 ~t~~~~~~i~~~~~~~----------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v 156 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRV----------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSV 156 (361)
T ss_dssp TTCCEEEEEEECTTBC----------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEE
T ss_pred cCCcEEEEEEcCcccc----------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-ccee
Confidence 8877655443321100 01113556899999999998874 57899999999988776 43 322 2234
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE------EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCC
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG------VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 356 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 356 (498)
.+.|.....+++.+.||.+.+|+... .++... .+.....++ .+.+++++..++..+.++.|.++|+....
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~---~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGE---DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECT---TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECC---CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 55555557888999999999998751 123221 111122222 33345677777777888999999986532
Q ss_pred CccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc----eeEEEEEEEeccccCCCCcEEEEEec-------
Q 010883 357 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSH------- 425 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~g~~------- 425 (498)
.. .+..+.... ............+++|+++.++++..
T Consensus 233 ~~--------------------------------~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 233 VK--------------------------------VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp CE--------------------------------EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred ce--------------------------------ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 11 011110000 00000000011256778888887654
Q ss_pred ----CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 426 ----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 426 ----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. +.|.+||..++
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3489999999999999998776 999999999999998887 99999999876
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.6e-17 Score=157.44 Aligned_cols=249 Identities=10% Similarity=0.070 Sum_probs=163.9
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEeecCCCceeEEEEEeCCCCCe--EEEEE-------------
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYAS------------- 195 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~s------------- 195 (498)
..+..++|+|||++|++++.+ .|.+|++. +++....... ... +.+..++|+|+|++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 467789999999999999888 99999997 6754322111 111 12456899999995 44442
Q ss_pred CCCeEEEEECC-CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCeee--E
Q 010883 196 MSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE-ANKLS--L 270 (498)
Q Consensus 196 ~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~-~~~~~--~ 270 (498)
.++.+.+|++. .++.......... .+...+.+++|+|||++|+++.. ++.|++||+. +++.. .
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEY------------QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEe------------CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 68899999997 3543322111000 12236889999999998887764 6799999998 67653 2
Q ss_pred EEe--ccCCCeeEEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCCcee------EEec----cccc------cEEEEE-
Q 010883 271 RIL--AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPA------GVLM----GHLE------GITFID- 330 (498)
Q Consensus 271 ~~~--~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~------~~~~----~~~~------~v~~l~- 330 (498)
.+. .|...+..++|+ ++++++++++. ++.|.+|++... .++.. ..+. +|.. .+..++
T Consensus 185 ~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPA--THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCC--CCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 232 245678999998 78888877764 789999986421 22221 1121 1222 588999
Q ss_pred EcCCCCEEEEEeCCC------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEE---EEccCcee
Q 010883 331 SRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA---TYKGHSVL 401 (498)
Q Consensus 331 ~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 401 (498)
|+|||++|+++..+. .|.+|++.... .... ....+..
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g---------------------------------~~~~~~~~~~~~~~- 307 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCG---------------------------------SIEKQLFLSPTPTS- 307 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTS---------------------------------CEEEEEEEEECSSC-
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCC---------------------------------CEEEeeeeeecCCC-
Confidence 999999988766432 79999986311 1110 0111100
Q ss_pred EEEEEEEeccccCC---CCcEEEEEecC-CeEEEEECCCC
Q 010883 402 RTLIRCHFSPVYST---GQKYIYTGSHD-SCVYVYDLVSG 437 (498)
Q Consensus 402 ~~~~~~~~~~~~s~---~~~~l~~g~~d-g~i~iwd~~~~ 437 (498)
.....+|+| ||++|++++.+ +.|.+|++...
T Consensus 308 -----~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 308 -----GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -----CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -----CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 012346788 89999999875 89999998765
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=1.5e-17 Score=155.17 Aligned_cols=245 Identities=13% Similarity=0.151 Sum_probs=176.1
Q ss_pred eeEEEEEeCCCCCeEEEEECC------------------------CeEEEEECCCCceeccccccccccCccccccCCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMS------------------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 232 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (498)
+.+.+++++|+|+++++...+ +.|.+||..+++....... +
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------~ 88 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------------N 88 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT---------------T
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC---------------C
Confidence 369999999999988887776 4799999988776432211 1
Q ss_pred ceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEE---------eccCCCeeEEEEeCCCCCEEEEee-CCCeE
Q 010883 233 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---------LAHTSDVNTVCFGDESGHLIYSGS-DDNLC 301 (498)
Q Consensus 233 h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i 301 (498)
+-..+..++++++|+++++...++.|++||..... .+..+ ..+......+++.|.+++++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 22268899999999988888888999999986542 44444 233446889999843788888886 69999
Q ss_pred EEEcCccccCCCceeEEecc----------ccccEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883 302 KVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 302 ~vwd~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
++||. .+..+..+.. +......++++|+ +.++++...++.|++||..+.
T Consensus 169 ~~~~~-----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--------------- 228 (329)
T 3fvz_A 169 VQFSP-----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--------------- 228 (329)
T ss_dssp EEECT-----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------------
T ss_pred EEEcC-----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------------
Confidence 99995 4556655532 3344889999998 777777788899999998752
Q ss_pred cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC------CCcEEEEEecCCeEEEEECCCCcEEEEec
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST------GQKYIYTGSHDSCVYVYDLVSGEQVAALK 444 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 444 (498)
+.+..+.......... ..+++| +|+..++...+..|++||+.+++.+..+.
T Consensus 229 -------------------~~~~~~~~~~~~~~~~----~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 229 -------------------EFVREIKHASFGRNVF----AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp -------------------CEEEEECCTTTTTCEE----EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred -------------------cEEEEEeccccCCCcc----eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 3333332111101111 112333 33333334445689999999999998873
Q ss_pred ---cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 445 ---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 445 ---~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+...+.+++++|+|.++++...++.|++|++...
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 66778999999999988888889999999998754
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=8.1e-18 Score=158.30 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=161.2
Q ss_pred ceEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEeecCCC---ceeEEEEEeCCCCCeEEEEECC-----------
Q 010883 133 RAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYASMS----------- 197 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~-~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~s~d----------- 197 (498)
.+..++|+|||+++++ +..++.|.+||+.+++........... ...+..++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 5678999999986654 456899999999988665543322110 2347789999999999998865
Q ss_pred -CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC
Q 010883 198 -PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 276 (498)
Q Consensus 198 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 276 (498)
+.|.+||+.+++......... +...+.+++|+|+|+ +++++. .|++||+.+++....+..+.
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~ 186 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP--------------MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRN 186 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE--------------CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTT
T ss_pred CCeEEEEECCCccccceeeecc--------------CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccc
Confidence 899999998765432222111 112577899999999 666543 49999999998877665332
Q ss_pred C------------------------CeeEEEEeCCCCC-----------EEEEeeCCCeEEEEcCccccCCCceeEEecc
Q 010883 277 S------------------------DVNTVCFGDESGH-----------LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 321 (498)
Q Consensus 277 ~------------------------~v~~~~~~~~~~~-----------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 321 (498)
. ....++++ +++. ++.....++.+.+|++. .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 252 (349)
T 1jmx_B 187 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------------D 252 (349)
T ss_dssp CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEEEEEEE-------------E
T ss_pred cCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCccccccceeEEEEeccCCcEEecccc-------------c
Confidence 0 22334444 2211 11122233344444432 2
Q ss_pred ccccEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883 322 HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 400 (498)
Q Consensus 322 ~~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
+...+..++++| ++++++++ ++.|.+||+.+. +.+..+.....
T Consensus 253 ~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~ 296 (349)
T 1jmx_B 253 LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR----------------------------------KLIKAANLDHT 296 (349)
T ss_dssp CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC
T ss_pred CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC----------------------------------eEEEEEcCCCC
Confidence 455788999999 99999888 889999999873 33333332211
Q ss_pred eEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC
Q 010883 401 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 446 (498)
Q Consensus 401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 446 (498)
...++|+|++++|++++.++.|++||+.+++.+..+...
T Consensus 297 -------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 -------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -------CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred -------ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 123467789999998888999999999999998888654
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=5.2e-18 Score=174.21 Aligned_cols=299 Identities=12% Similarity=0.029 Sum_probs=190.7
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeEEEEEeecCCCceeEE---------EEEeC--CCCCe-
Q 010883 125 WPVDQTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVT---------DTSLS--PDQRH- 190 (498)
Q Consensus 125 ~~l~~h~~~v~~~~~s~dg~~la~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~---------~~~~s--p~~~~- 190 (498)
..+.+|...+..++|++++-+++.. +.++...||....+.....+ ..+...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA---LPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES---SCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee---CCCCccccccccccCCccceeeeecCCCeE
Confidence 3567789999999999887677766 55888999986444333322 22333444 45554 99998
Q ss_pred EEEEEC-CCeEEEEECC--C-CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----------C
Q 010883 191 LVYASM-SPIVHIVDVG--S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------D 256 (498)
Q Consensus 191 l~~~s~-d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----------g 256 (498)
|+.++. +..|.+|++. + +....+.... ...|...+.+++|+|||+.|++++.+ .
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCC------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCc------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 877664 5567777766 3 4432222110 00144578899999999999998876 5
Q ss_pred eEEEEECCC------CeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCC--------CeEEEEcCccccCCC---ceeEE
Q 010883 257 CIYVYDLEA------NKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKG---KPAGV 318 (498)
Q Consensus 257 ~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~---~~~~~ 318 (498)
.|++||+.+ ++. ..+. .+...+..++|+ +++++|+.++.+ ..|++||+.. .+ .....
T Consensus 162 ~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~---~g~~~~~~~l 236 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTE---DGRFADTRTL 236 (662)
T ss_dssp EEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECT---TSCEEEEEEE
T ss_pred EEEEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECC---CCcccccEEe
Confidence 899999988 544 4555 566778889998 889988877755 3799999851 12 33333
Q ss_pred eccccccEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEc
Q 010883 319 LMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 396 (498)
Q Consensus 319 ~~~~~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (498)
..+|...+..+.|+|||++++++..++ .|.+||+.+...... ..
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l----------------------------------~~ 282 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL----------------------------------CR 282 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES----------------------------------SC
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec----------------------------------cc
Confidence 344568899999999999888888888 556666544221100 00
Q ss_pred cCceeEEE-EE-EEeccccCCCCcEEEEEecCCeEEEE--ECCCCcEEEEeccCCCCeeee-EEcCCCCeEEEEeCCCc-
Q 010883 397 GHSVLRTL-IR-CHFSPVYSTGQKYIYTGSHDSCVYVY--DLVSGEQVAALKYHTSPVRDC-SWHPSQPMLVSSSWDGD- 470 (498)
Q Consensus 397 ~~~~~~~~-~~-~~~~~~~s~~~~~l~~g~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l-~~sp~~~~l~s~~~Dg~- 470 (498)
.+...... .. .....+|+|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++.+.-++++++.+..
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCC
Confidence 00000000 00 0011246678999999998 999998 655555 67787787778777 55433334555566654
Q ss_pred -EEEecCCCC
Q 010883 471 -VVRWEFPGN 479 (498)
Q Consensus 471 -i~iw~~~~~ 479 (498)
|.+|++.++
T Consensus 361 ~i~~~d~~~g 370 (662)
T 3azo_A 361 EVVELDTVTG 370 (662)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEECCCC
Confidence 444555444
No 169
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=5.2e-17 Score=152.78 Aligned_cols=259 Identities=12% Similarity=0.168 Sum_probs=175.0
Q ss_pred CceEEEEEcCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC---C-
Q 010883 132 SRAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---P- 198 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d---~- 198 (498)
..+..+++ ||+++|... .++.|.+|++.++.... + ..+..++|+|||++|++++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 35677788 999888653 25679999999875322 1 358889999999999987754 3
Q ss_pred -eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----------------------
Q 010883 199 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------------- 255 (498)
Q Consensus 199 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---------------------- 255 (498)
.|.+|++.+++...+.. +.. +..++|+|||+.|+.++.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~-----------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE-----------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp EEEEEEETTTTEEEEEEE-----------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred ceEEEEECCCCceEEEEc-----------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 48888888876544322 112 7889999999999888642
Q ss_pred -----CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC-------eEEEEcCccccCCCceeEEecccc
Q 010883 256 -----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 256 -----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
..|++||+.+++.+..+.. . .+..+.|+ +++ +++++..++ ...+|.+. .+. ...+..+
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~- 216 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK- 216 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-
T ss_pred ccCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCc-eEEeccC-
Confidence 5799999999887455554 4 88999998 677 777776542 44555554 222 2333334
Q ss_pred ccEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883 324 EGITFIDSRGDGRYLISNGKD--------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 395 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
..+..+ +|||+.|+.++.+ ..|.+|| +. +.....
T Consensus 217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------------------------~~~~l~ 258 (347)
T 2gop_A 217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------------------------EVMGIL 258 (347)
T ss_dssp ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------------------------CEEESS
T ss_pred cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------------------------ceEecc
Confidence 455544 9999988877754 3577777 21 111111
Q ss_pred ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE-EEe
Q 010883 396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV-VRW 474 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i-~iw 474 (498)
..+.. .+.. .+.|+ |+ ++++++.++.++|| +.+++....+ .+...|.+++|+| .++++++.++.. .+|
T Consensus 259 ~~~~~--~~~~---~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 259 DEVDR--GVGQ---AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp TTCCS--EEEE---EEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred ccCCc--ccCC---ccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 11111 1111 13567 77 88999999999999 8766654444 4577899999999 677777777665 777
Q ss_pred cCC
Q 010883 475 EFP 477 (498)
Q Consensus 475 ~~~ 477 (498)
.++
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 765
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=1.7e-17 Score=156.62 Aligned_cols=260 Identities=15% Similarity=0.096 Sum_probs=177.9
Q ss_pred EEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeecCC---CceeEEEEEeCCCCCeEEEEEC--CCeE
Q 010883 136 VSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS---LRWTVTDTSLSPDQRHLVYASM--SPIV 200 (498)
Q Consensus 136 ~~~~s~dg~~la~~~~----------dg~i~vw~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~s~--d~~i 200 (498)
.++|+|||++|+++.. ++.|.+||..+.+.+........ +......++|+|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999998863 56799999998877666543321 1124567899999999998874 5799
Q ss_pred EEEECCCCceecc-ccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-CeeeEEE-----
Q 010883 201 HIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-NKLSLRI----- 272 (498)
Q Consensus 201 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~-~~~~~~~----- 272 (498)
.+||+.+++.... .... ....+.+.|++ ..+++.+.||.+.+|++.. ++.....
T Consensus 134 ~v~d~~~~~~~~~~i~~~------------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA------------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EEEETTTTEEEEEEGGGT------------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred EEEECCCCcEEEEEecCC------------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 9999998876543 3221 12335667765 6778888999999999865 4443221
Q ss_pred -eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--c----c----cccEEEEEEcCCCCEEEEE
Q 010883 273 -LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--G----H----LEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 273 -~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~----~----~~~v~~l~~~~~~~~l~s~ 341 (498)
..+..++ .+.++ +++..++..+.++.|.++|+... .......+. . + ......++++|+++.++++
T Consensus 196 ~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 196 FSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSGD--EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp SCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSSS--SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred EcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecCC--CceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence 1111221 22333 44556666778899999998521 111111111 0 0 0111236899998887765
Q ss_pred eC-----------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEec
Q 010883 342 GK-----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 410 (498)
Q Consensus 342 ~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (498)
.. .+.|.+||+.+ .+.+..+..+. .+.
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~--------p~~ 309 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD--------ALS 309 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT--------CCE
T ss_pred EccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC--------eeE
Confidence 43 34799999987 35556665544 234
Q ss_pred cccCCCCcEEEEEecCCeEEEEECCCC--cEEEEeccCCCCeeeeEEcCCCC
Q 010883 411 PVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSWHPSQP 460 (498)
Q Consensus 411 ~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~ 460 (498)
.+|+|||++|++++. +.|.+||+.++ +.+..+..+......++++|+|.
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 467789999999887 99999999999 99999876777889999999986
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2e-16 Score=144.50 Aligned_cols=246 Identities=11% Similarity=0.139 Sum_probs=173.2
Q ss_pred CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE-cCCCCEEEEEe
Q 010883 175 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGS 253 (498)
Q Consensus 175 ~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~~g~~l~~g~ 253 (498)
+-..+.+++++|+++++++...++.|.+||... +......... ...++...+.++++ .++++++++..
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~----------~~~~~~~~p~~i~~~~~~g~l~v~~~ 96 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG----------KRDSQLLYPNRVAVVRNSGDIIVTER 96 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS----------SSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccC----------CCcccccCceEEEEEcCCCeEEEEcC
Confidence 344689999999999888888899999999874 3322221100 01123446889999 46776665553
Q ss_pred C-CCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEE
Q 010883 254 S-DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI 329 (498)
Q Consensus 254 ~-dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l 329 (498)
. ++.|.+|| .+++.+..+. .+...+.++++. ++++++++...++.|.+||.. +..+..+. .+...+..+
T Consensus 97 ~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 97 SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-----GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-----SCEEEEEECTTTCSSEEEE
T ss_pred CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCC-----CCEEEEeCCCCccCCcEEE
Confidence 3 78999999 5666666554 334578999997 678888888888999999963 44444443 344578999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEe
Q 010883 330 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 409 (498)
Q Consensus 330 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (498)
+++++++++++...++.|++||... ..+..+......... .
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------------------~~~~~~~~~g~~~~p----~ 210 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGITNYP----I 210 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTSCSE----E
T ss_pred EECCCCCEEEEECCCCEEEEEcCCC-----------------------------------CEEEEEccCCccCCC----c
Confidence 9999999888888889999999753 233333222111111 2
Q ss_pred ccccCCCCcEEEEEecCC-eEEEEECCCCcEEEEeccCCC--CeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 410 SPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 410 ~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+|+++++ +.|+.|++|++...
T Consensus 211 ~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 211 GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 235667898888887776 9999995 5777777765433 4779999999987777 67999999998653
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.1e-16 Score=144.38 Aligned_cols=246 Identities=14% Similarity=0.152 Sum_probs=172.2
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec---CCCceeEEEEEe-CCCCCeEEEEEC-CCeEEE
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSL-SPDQRHLVYASM-SPIVHI 202 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~~~~-sp~~~~l~~~s~-d~~i~i 202 (498)
.++-....+++++++|+++++...++.|.+||.. +..+...... ..+...+..+++ .++++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3456678999999999998888889999999987 4344332211 123346889999 577776666543 789999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe--ccCCCee
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVN 280 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~v~ 280 (498)
|+ .+++....... .+...+.+++++++|+++++...++.|.+||.. ++.+..+. .+...+.
T Consensus 105 ~d-~~g~~~~~~~~---------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 105 YN-QYGQFVRKFGA---------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EC-TTSCEEEEECT---------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred EC-CCCcEEEEecC---------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 99 44544322211 112257899999999977777778999999964 55555553 3445789
Q ss_pred EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc--cccEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCCC
Q 010883 281 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSS 357 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~ 357 (498)
.+++. ++++++++...++.|++||.. +..+..+..+ ...+..++++++|+++++...++ .|.+||...
T Consensus 168 ~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--- 238 (286)
T 1q7f_A 168 GVVVN-DKQEIFISDNRAHCVKVFNYE-----GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--- 238 (286)
T ss_dssp EEEEC-SSSEEEEEEGGGTEEEEEETT-----CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---
T ss_pred EEEEC-CCCCEEEEECCCCEEEEEcCC-----CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---
Confidence 99997 678888887889999999973 4555555433 36789999999999888888776 999999643
Q ss_pred ccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883 358 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437 (498)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 437 (498)
+.+..+..+...... ...+++|+|+++++ +.++.|++|++...
T Consensus 239 --------------------------------~~~~~~~~~~~~~~~----~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 --------------------------------QLISALESKVKHAQC----FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --------------------------------CEEEEEEESSCCSCE----EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred --------------------------------CEEEEEcccCCCCcc----eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 333344332211111 23356678987766 67999999997653
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=6.3e-17 Score=166.14 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=173.1
Q ss_pred EEEEc--CCCCE-EEEEEC-CCeEEEEECC--C-CeEEEEEeecCC---CceeEEEEEeCCCCCeEEEEECC--------
Q 010883 136 VSQFS--ADGSL-FVAGFQ-ASQIRIYDVE--R-GWKIQKDILAKS---LRWTVTDTSLSPDQRHLVYASMS-------- 197 (498)
Q Consensus 136 ~~~~s--~dg~~-la~~~~-dg~i~vw~~~--~-~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~s~d-------- 197 (498)
...|+ |||++ |+.++. +..|.+|++. . +. ...+ .... +...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 45554 99998 776654 5667777776 2 42 2222 1111 56688999999999999998876
Q ss_pred --CeEEEEECCC------CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEE
Q 010883 198 --PIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVY 261 (498)
Q Consensus 198 --~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------g~i~vw 261 (498)
..|++||+.+ ++...+.. .+...+..++|+|||++|+.++.+ ..|++|
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRELSD----------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEESSC----------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred ceeEEEEEECCCCccccCCceeEEEe----------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence 5899999987 54433220 011257788999999999988755 379999
Q ss_pred ECC-CC---eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC--eEEEEcCccccCCCceeEEecccccc--------EE
Q 010883 262 DLE-AN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEG--------IT 327 (498)
Q Consensus 262 d~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~--------v~ 327 (498)
|+. ++ +.......|...+..+.|+ ++++++++++.++ .|.+||+. .+........+... +.
T Consensus 223 d~~~~g~~~~~~~l~~~~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~ 297 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGPEEAIAQAEWA-PDGSLIVATDRTGWWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMR 297 (662)
T ss_dssp EECTTSCEEEEEEEEEETTBCEEEEEEC-TTSCEEEEECTTSSCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCC
T ss_pred EECCCCcccccEEeCCCCCceEcceEEC-CCCeEEEEECCCCCeEEEEEECC----CCceeecccccccccCccccccCc
Confidence 999 56 4433333457889999998 6777888888888 66666664 33333222222221 46
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEE
Q 010883 328 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 407 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (498)
.++|+|++++++++.. +.++||.+.... ..+..+..+.... ...
T Consensus 298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~---------------------------------~~~~~l~~~~~~~--~~~ 341 (662)
T 3azo_A 298 WFAPLANGLIAVVHGK-GAAVLGILDPES---------------------------------GELVDAAGPWTEW--AAT 341 (662)
T ss_dssp SEEECTTSCEEEEEBS-SSCEEEEEETTT---------------------------------TEEEECCSSCCEE--EEE
T ss_pred eEeEeCCCEEEEEEEc-CccEEEEEECCC---------------------------------CcEEEecCCCCeE--EEE
Confidence 7889999999999998 999999443210 2233343332111 111
Q ss_pred EeccccCCCCcEEEEEecCC--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 408 HFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 408 ~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
++ ++.+.-++++++.+. .|+++|+.+++.......|...+....+.+...+.+.+..+..|..|-+.
T Consensus 342 -~s--~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 342 -LT--VSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp -EE--EETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred -Ee--cCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 11 122222333344443 57777887887655545555555555565554444444344466666543
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=4.7e-17 Score=152.19 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=182.7
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~ 211 (498)
..|.+++|++++..++..+.++.++.|. +...... ..+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEI---SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEE---ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEE---eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4567788999988887777888999992 3233322 223335789999999997778888899999999887654
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEEEe--ccCCCeeEEEEe
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRIL--AHTSDVNTVCFG 285 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~ 285 (498)
..... +...+.+++++++|+++++...+ +.|.+||..+++....+. .+...+.++++.
T Consensus 80 ~~~~~----------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d 143 (333)
T 2dg1_A 80 RPFVS----------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD 143 (333)
T ss_dssp EEEEC----------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred EEeeC----------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence 33210 11268999999999977776666 689999998877643332 234578999997
Q ss_pred CCCCCEEEEeeC------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCc
Q 010883 286 DESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 286 ~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~ 358 (498)
++++++++... .+.|..+|.. ... ...+......+..++|+|+++.|+ +...++.|.+||+......
T Consensus 144 -~~g~l~v~~~~~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 144 -SKGGFYFTDFRGYSTNPLGGVYYVSPD----FRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp -TTSCEEEEECCCBTTBCCEEEEEECTT----SCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred -CCCCEEEEeccccccCCCceEEEEeCC----CCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 67887776653 3566666653 222 223333445678999999998665 4456789999998641100
Q ss_pred -cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC
Q 010883 359 -ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 437 (498)
Q Consensus 359 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 437 (498)
.... ......+.++. . ...++++++|+++++...++.|.+||. .+
T Consensus 218 ~~~~~--------------------------~~~~~~~~~~~---~----~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g 263 (333)
T 2dg1_A 218 IQPFG--------------------------ATIPYYFTGHE---G----PDSCCIDSDDNLYVAMYGQGRVLVFNK-RG 263 (333)
T ss_dssp EEEEE--------------------------EEEEEECCSSS---E----EEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred ccccc--------------------------ceEEEecCCCC---C----CCceEECCCCCEEEEEcCCCEEEEECC-CC
Confidence 0000 00000111111 1 122356678998888777899999998 57
Q ss_pred cEEEEeccCCC------CeeeeEEcCCCCeEEEEeCC
Q 010883 438 EQVAALKYHTS------PVRDCSWHPSQPMLVSSSWD 468 (498)
Q Consensus 438 ~~~~~~~~h~~------~v~~l~~sp~~~~l~s~~~D 468 (498)
+.+..+..+.. .+.+++|+|++..|+.++.+
T Consensus 264 ~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 264 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 77766654432 68999999998766655554
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=4.1e-17 Score=156.02 Aligned_cols=261 Identities=10% Similarity=0.010 Sum_probs=170.3
Q ss_pred EEECCCCeEEEEEeecCCCceeEEE-----EEeCCCCCeEEEEEC-CC--eEEEEECCCCceeccccccccccCcccccc
Q 010883 157 IYDVERGWKIQKDILAKSLRWTVTD-----TSLSPDQRHLVYASM-SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAA 228 (498)
Q Consensus 157 vw~~~~~~~~~~~~~~~~~~~~v~~-----~~~sp~~~~l~~~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (498)
.++..++..+..+ ..+...... .+|+|||++|++++. ++ .|.+||+.+++...+...
T Consensus 14 ~~~~~~g~~~~~l---t~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~------------ 78 (388)
T 3pe7_A 14 YQDASTGAQVTRL---TPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG------------ 78 (388)
T ss_dssp EECTTTCCEEEEC---SCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS------------
T ss_pred EecCCCCcceEEe---cCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC------------
Confidence 3466666554433 233334444 789999999999887 66 488899998876554431
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEe-CCCCCEEEEe------------
Q 010883 229 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSG------------ 295 (498)
Q Consensus 229 ~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~------------ 295 (498)
+...+..+.|+|||+.|+.++.++.|++||+.+++.......+...+....|. .+++.+++..
T Consensus 79 ----~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 79 ----RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp ----SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred ----CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence 22233456899999999999999999999999998766665565555444441 3777777642
Q ss_pred ----------eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCCCc
Q 010883 296 ----------SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSN 358 (498)
Q Consensus 296 ----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~ 358 (498)
..+..|.+||+. .++ ...+..+...+..+.|+| ||+.|+....+ ..|.++|+....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~----~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-- 227 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLK----TGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-- 227 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETT----TCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--
T ss_pred cchhhhhhccCCcceEEEEECC----CCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--
Confidence 245789999986 443 444555677899999999 99998877653 367777776421
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CC----eEEEEE
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYD 433 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iwd 433 (498)
...+..+.... ....+.|||||+.|+..+. ++ .|++||
T Consensus 228 ---------------------------------~~~l~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 228 ---------------------------------MRKVKTHAEGE----SCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp ---------------------------------CEESCCCCTTE----EEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred ---------------------------------eEEeeeCCCCc----ccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence 11111111001 1224568889997766544 22 399999
Q ss_pred CCCCcEE--EEeccCCC---CeeeeEEcCCCCeEEEE---------eCCCcEEEecCCCCC
Q 010883 434 LVSGEQV--AALKYHTS---PVRDCSWHPSQPMLVSS---------SWDGDVVRWEFPGNG 480 (498)
Q Consensus 434 ~~~~~~~--~~~~~h~~---~v~~l~~sp~~~~l~s~---------~~Dg~i~iw~~~~~~ 480 (498)
+.+++.. ..+.++.. ....++|+|||+.|+.. ..+..|++||+.++.
T Consensus 271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 9998743 33332110 12334799999977754 456689999998753
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=5.3e-17 Score=168.48 Aligned_cols=287 Identities=14% Similarity=0.112 Sum_probs=176.5
Q ss_pred eEEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 134 AYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
...++|||||++|+.++.+ +.+.+||+.+++.. ....+...+...+|||||+.||.+. ++.|++|+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 3458899999999998876 56779999998432 2334555799999999999999985 68999999
Q ss_pred CCCCceeccccccccccCccccccCCCCce---------ecEEEEEEcCCCCEEEEEeCCC-------------------
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD------------------- 256 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~i~~~~~s~~g~~l~~g~~dg------------------- 256 (498)
+.+++...+...... ...+ .++. .....+.|||||+.||.++.|.
T Consensus 139 ~~~~~~~~lt~~g~~--~~~~-----~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~ 211 (740)
T 4a5s_A 139 EPNLPSYRITWTGKE--DIIY-----NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP 211 (740)
T ss_dssp STTSCCEECCSCCBT--TTEE-----ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred CCCCceEEEcCCCCc--ccee-----cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence 988875443221100 0000 0111 1223589999999999875321
Q ss_pred -----------------eEEEEECCC---Ce--eeEEEec------cCCCeeEEEEeCCCCCEEEEeeC----CCeEEEE
Q 010883 257 -----------------CIYVYDLEA---NK--LSLRILA------HTSDVNTVCFGDESGHLIYSGSD----DNLCKVW 304 (498)
Q Consensus 257 -----------------~i~vwd~~~---~~--~~~~~~~------~~~~v~~~~~~~~~~~~l~s~s~----dg~i~vw 304 (498)
.|++||+.+ ++ ....+.. |...+..++|+ +++++++.... +..|.+|
T Consensus 212 ~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEE
T ss_pred cceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEE
Confidence 588899988 73 2233432 77789999999 67776665433 3479999
Q ss_pred cCccccCCCc----e--eEEe--ccccccEE-----EEEEcCCCCEEE-EEe-CCC--cEEEEeCCCCCCccccccCccc
Q 010883 305 DRRCLNVKGK----P--AGVL--MGHLEGIT-----FIDSRGDGRYLI-SNG-KDQ--AIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 305 d~~~~~~~~~----~--~~~~--~~~~~~v~-----~l~~~~~~~~l~-s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
|+. .++ + +..+ ..|...|. .+.|+|||+.|+ ..+ .+| .|++||+......
T Consensus 291 d~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~--------- 357 (740)
T 4a5s_A 291 DYD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT--------- 357 (740)
T ss_dssp EEE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE---------
T ss_pred ECC----CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE---------
Confidence 987 333 1 1111 33444443 678999999877 555 343 5888887753211
Q ss_pred ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE-EEec----CC--eEEEEECCCCcEE
Q 010883 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSH----DS--CVYVYDLVSGEQV 440 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~----dg--~i~iwd~~~~~~~ 440 (498)
....+....... .. + |++.|+ +++. .+ .|+..++..+...
T Consensus 358 -------------------------~lT~g~~~v~~~----~~--~--d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~ 404 (740)
T 4a5s_A 358 -------------------------FITKGTWEVIGI----EA--L--TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV 404 (740)
T ss_dssp -------------------------ESCCSSSCEEEE----EE--E--CSSEEEEEESCGGGCTTCBEEEEEETTEEEEE
T ss_pred -------------------------ecccCCEEEEEE----EE--E--eCCEEEEEEecCCCCCceeEEEEEECCCCCcc
Confidence 111111111111 11 2 344444 4443 22 4555565555444
Q ss_pred EEecc----CCCCeeeeEEcCCCCeEEEEeCC---CcEEEecCCCC
Q 010883 441 AALKY----HTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN 479 (498)
Q Consensus 441 ~~~~~----h~~~v~~l~~sp~~~~l~s~~~D---g~i~iw~~~~~ 479 (498)
..+.. ....+..+.|+|++++++..... ..+.+++..++
T Consensus 405 ~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 405 TCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred eeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 34542 23568899999999976654433 35777776654
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=3.4e-16 Score=161.72 Aligned_cols=284 Identities=11% Similarity=0.086 Sum_probs=185.4
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCeEEEEEe----ecCCCceeEEEEEeCCCCCeEEEEECCC-----eEEEEECC
Q 010883 141 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVG 206 (498)
Q Consensus 141 ~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~s~d~-----~i~iwd~~ 206 (498)
|||++++....++ .|.+.+...+.. ..++ ...++...+..++|||||++|+.++.++ .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 7888777654322 344444444422 1111 1234555789999999999999876543 89999999
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCeee-
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC----------------IYVYDLEANKLS- 269 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~----------------i~vwd~~~~~~~- 269 (498)
+++...... . ...+..++|+|||+.|+.++.++. |++|++.+++..
T Consensus 160 tg~~~~~~~-~----------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 160 GAKELPDVL-E----------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp TTEEEEEEE-E----------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred CCCCCcccc-c----------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence 987654211 0 013567899999999999987765 999999887632
Q ss_pred -EEEe--ccCCCeeEEEEeCCCCCEEEEeeC-----CCeEEEEcCcccc--CCCc-eeEEeccccccEEEEEEcCCCCEE
Q 010883 270 -LRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN--VKGK-PAGVLMGHLEGITFIDSRGDGRYL 338 (498)
Q Consensus 270 -~~~~--~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~~~--~~~~-~~~~~~~~~~~v~~l~~~~~~~~l 338 (498)
..+. .|...+..+.|+ +++++|+.++. +..|++||+.... ..+. ....+..+...+.. .|+|+|..|
T Consensus 223 ~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l 300 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVF 300 (710)
T ss_dssp EEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEE
T ss_pred eEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEE
Confidence 2222 245567899998 78888877664 5789999986200 0021 34555556666554 488899888
Q ss_pred EEEeCC----CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 339 ISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 339 ~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
+..+.. +.|.+||+.+... .....+..+.....+..+ .++
T Consensus 301 ~~~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~~~~~~----~~~ 344 (710)
T 2xdw_A 301 TFKTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKDVLEWV----ACV 344 (710)
T ss_dssp EEEECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSCEEEEE----EEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCCeEEEE----EEE
Confidence 766653 3599999876321 011112222111111122 344
Q ss_pred CCCcEEEEEecCC--eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEE-e---CCCcEEEecCCCCC
Q 010883 415 TGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS-S---WDGDVVRWEFPGNG 480 (498)
Q Consensus 415 ~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~-~---~Dg~i~iw~~~~~~ 480 (498)
+++.++++...++ .|++||+.+++.+..+..+.+.|..++++|+++.|+.. + ..+.|+.||+.++.
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5778888888888 46677887888888888788889999999999855533 2 34789999998765
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=1.3e-15 Score=142.05 Aligned_cols=253 Identities=11% Similarity=0.060 Sum_probs=174.0
Q ss_pred CCCceEEEEEcCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeC
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQA------------------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 185 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~s 185 (498)
--+.+.+++++|+|+++++...+ +.|.+||..+++..... ...+-..+..++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d 99 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSID 99 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEEC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEEC
Confidence 35779999999999999988777 47999999888654332 22333468999999
Q ss_pred CCCCeEEEEECCCeEEEEECCCCc-eeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEe-CCCeEEEEE
Q 010883 186 PDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS-SDDCIYVYD 262 (498)
Q Consensus 186 p~~~~l~~~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~-~dg~i~vwd 262 (498)
|+|+++++...++.|++|+..... ......... . .....++-..+..++++| ++.++++.+ .++.|++||
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-~------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-Q------PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT-B------CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC-C------CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 999988888888999999986542 111111000 0 000112334688999999 788777776 689999999
Q ss_pred CCCCeeeEEEecc----------CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--cccccEEEEE
Q 010883 263 LEANKLSLRILAH----------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFID 330 (498)
Q Consensus 263 ~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~ 330 (498)
.+++.+..+... -.....+++.|..++++++...++.|++||.. .++.+..+. .+...+..++
T Consensus 173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEE
T ss_pred -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceee
Confidence 566666666422 23488999984448888888889999999986 577776663 4556788999
Q ss_pred EcCCCCEEEE-------EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeE
Q 010883 331 SRGDGRYLIS-------NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLR 402 (498)
Q Consensus 331 ~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 402 (498)
++| +..+++ ...+..|++||+.+. +.+..+... ....
T Consensus 248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g----------------------------------~~~~~~~~~~~~~~ 292 (329)
T 3fvz_A 248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG----------------------------------EIIDVFKPVRKHFD 292 (329)
T ss_dssp EET-TEEEEEECCCCTTCSCCCCEEEEETTTC----------------------------------CEEEEECCSSSCCS
T ss_pred ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC----------------------------------eEEEEEcCCCCccC
Confidence 999 333333 334458999998763 333333211 0011
Q ss_pred EEEEEEeccccCCCCcEEEEEecCCeEEEEECC
Q 010883 403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 435 (498)
Q Consensus 403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 435 (498)
.. ..++++|+|.++++...++.|++|++.
T Consensus 293 ~p----~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 293 MP----HDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp SE----EEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred Ce----eEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 11 233567799888888889999999975
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=4.3e-14 Score=129.63 Aligned_cols=283 Identities=9% Similarity=0.058 Sum_probs=188.7
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 128 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 128 ~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
..+...+.+++++++|+++++...++.|.+||.. +.. .... .......+..+++.++++++++...++.|..|+..
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 3445789999999999988877668899999988 532 2222 12233578999999999988777668899999976
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEeC
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGD 286 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~ 286 (498)
++.... ... .....+.++++.++|+++++...++.|.+||. +++.... ...+...+..+++.
T Consensus 87 g~~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~- 149 (299)
T 2z2n_A 87 GIIKEY-TLP--------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG- 149 (299)
T ss_dssp SCEEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-
T ss_pred CcEEEE-eCC--------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-
Confidence 332111 110 01125889999999987777777889999998 5544322 22345678899996
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeE-EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 365 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 365 (498)
++++++++...++.|..||.. +.... ........+..++++++++++++...++.|.+||. +..
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--------- 214 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITES-----GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--------- 214 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---------
T ss_pred CCCCEEEEeCCCCEEEEEcCC-----CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc---------
Confidence 778888777778899999972 22222 23334556889999999997777767888999998 421
Q ss_pred ccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE-ec
Q 010883 366 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LK 444 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~ 444 (498)
+..+......... ...+++++|++.++...++.|..||. +++.... +.
T Consensus 215 --------------------------~~~~~~~~~~~~~----~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 263 (299)
T 2z2n_A 215 --------------------------ITEFKIPTPNARP----HAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQ 263 (299)
T ss_dssp --------------------------EEEEECSSTTCCE----EEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECS
T ss_pred --------------------------EEEEECCCCCCCc----eeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCC
Confidence 1111111000111 22345668886666657889999998 4543222 33
Q ss_pred cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 445 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 445 ~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+...+.++++ +++.++++.. .+.|..++....
T Consensus 264 ~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 45567899999 8888777655 566777776543
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=8.3e-15 Score=145.16 Aligned_cols=276 Identities=14% Similarity=0.046 Sum_probs=189.8
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC--CCceeccccccc
Q 010883 141 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTE 218 (498)
Q Consensus 141 ~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~--~~~~~~~~~~~~ 218 (498)
|.+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.++.|.+||+. +++........
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-
Confidence 44556777778899999999998766654322 246789999999999999999999999995 55443322211
Q ss_pred cccCccccccCCCCceecEEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCeeeEEEec----------cC-CCeeEE
Q 010883 219 IHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HT-SDVNTV 282 (498)
Q Consensus 219 ~~~~~~~~~~~~~~h~~~i~~~~~s----~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~----------~~-~~v~~~ 282 (498)
.....++|+ |||+++++++. ++.|.++|..+.+.+..+.. |. ..+..+
T Consensus 240 ----------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 240 ----------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp ----------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred ----------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 146789999 69998887765 58999999999998877652 21 257788
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCcccc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 361 (498)
..++....+++....+|.|.++|..... ...+..+ ........+.|+|++++++++. .++.|.++|+.+..
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----- 375 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----- 375 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-----
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-----
Confidence 8875556677777788999999986211 1112222 2334567889999999987665 57889999998742
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEcc-CceeE--EEEEEEeccccCCCCcEEE-EEe-cCCeEEEEECCC
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLR--TLIRCHFSPVYSTGQKYIY-TGS-HDSCVYVYDLVS 436 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~s~~~~~l~-~g~-~dg~i~iwd~~~ 436 (498)
.+..+.. ..... .... .++|++..+. ++. .++.|.++|..+
T Consensus 376 -----------------------------l~~~i~vgg~~Phpg~g~~-----~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 376 -----------------------------LVAIEDTGGQTPHPGRGAN-----FVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp -----------------------------EEEEEECSSSSBCCTTCEE-----EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred -----------------------------EEEEEeccCcCCCCcccee-----eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 2222221 11000 0000 1244544444 443 468999999988
Q ss_pred -------CcEEEEeccCCCCeeeeEEcCCCCeEEEEeC-------CCcEEEecCCCC
Q 010883 437 -------GEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-------DGDVVRWEFPGN 479 (498)
Q Consensus 437 -------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~-------Dg~i~iw~~~~~ 479 (498)
.+.+.++......-..+..+|++++|..... .+.|.++|+.+.
T Consensus 422 ~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 422 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6778888755443345788999998888663 359999999876
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.74 E-value=4.2e-16 Score=160.52 Aligned_cols=280 Identities=11% Similarity=0.019 Sum_probs=176.7
Q ss_pred cCCCCEEEEEECCC-----eEEEEECCCCeEEEEEee----cCCCceeEEEEEeCCCCCeEEEEE-----CCCeEEEEEC
Q 010883 140 SADGSLFVAGFQAS-----QIRIYDVERGWKIQKDIL----AKSLRWTVTDTSLSPDQRHLVYAS-----MSPIVHIVDV 205 (498)
Q Consensus 140 s~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~s-----~d~~i~iwd~ 205 (498)
+|+|++++....++ .|.+.+...+.. ..+.. ..+|...+..++|||||++||.+. .+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 37888887766543 244444444422 22221 224566899999999999999543 3468999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCee----
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------------IYVYDLEANKL---- 268 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~-------------i~vwd~~~~~~---- 268 (498)
.+++......... . ....++|+|||+.|+.++.+.. |++|++.++..
T Consensus 155 ~tg~~~~~~~~~~--------------~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l 218 (695)
T 2bkl_A 155 DSGEWSKVDVIEG--------------G--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV 218 (695)
T ss_dssp TTCCBCSSCCBSC--------------C--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE
T ss_pred CCCCCcCCcccCc--------------c--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE
Confidence 9987531111110 0 1256899999999999988765 99999998762
Q ss_pred eEEEeccCCCeeEEEEeCCCCCEEEEeeCCC----eEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe--
Q 010883 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-- 342 (498)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-- 342 (498)
+.....|...+..+.|+ +++++|+.++.++ .|.+|+.. .+ ....+..+...+....+ +++.+++...
T Consensus 219 v~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~ 291 (695)
T 2bkl_A 219 VHERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEG 291 (695)
T ss_dssp EECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTT
T ss_pred EEecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCC
Confidence 22223455678899998 7778777776665 67777653 22 34445555566666666 5566444443
Q ss_pred -CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEE
Q 010883 343 -KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 421 (498)
Q Consensus 343 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 421 (498)
.++.|.+||+.+.... .....+..+.. ..+... .++ ++.+++
T Consensus 292 ~~~~~l~~~d~~~~~~~-------------------------------~~~~l~~~~~~-~~l~~~----~~~-~~~lv~ 334 (695)
T 2bkl_A 292 APRQRVFEVDPAKPARA-------------------------------SWKEIVPEDSS-ASLLSV----SIV-GGHLSL 334 (695)
T ss_dssp CTTCEEEEEBTTBCSGG-------------------------------GCEEEECCCSS-CEEEEE----EEE-TTEEEE
T ss_pred CCCCEEEEEeCCCCCcc-------------------------------CCeEEecCCCC-CeEEEE----EEE-CCEEEE
Confidence 2578999998763210 00111111100 111111 223 678889
Q ss_pred EEecCCeEEEEECC-CCcEEEEeccC-CCCeeeeEEcCCCCeEEEE----eCCCcEEEecCCCCC
Q 010883 422 TGSHDSCVYVYDLV-SGEQVAALKYH-TSPVRDCSWHPSQPMLVSS----SWDGDVVRWEFPGNG 480 (498)
Q Consensus 422 ~g~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~----~~Dg~i~iw~~~~~~ 480 (498)
+...|+..+||.+. +++.+..+..+ .+.|..++++|+++.|+.. ...++|++||+.+++
T Consensus 335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 99999988887654 46666667655 6778899999999866633 234789999997754
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=1.8e-15 Score=156.32 Aligned_cols=248 Identities=14% Similarity=0.144 Sum_probs=164.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe----
Q 010883 129 QTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 199 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~---- 199 (498)
+|...+..++|||||++||.+..++ .|++||+.+++........ ..+..++|+|||+.|++++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCccccc
Confidence 3555788999999999999876543 8999999998655432211 12567999999999999988765
Q ss_pred ------------EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----CCeEEEEE
Q 010883 200 ------------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYD 262 (498)
Q Consensus 200 ------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----dg~i~vwd 262 (498)
|++|++.+++......... ..|...+..+.|+|||++|+.++. +..|++||
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred cccccccCCCCEEEEEECCCCcccceEEecc------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 9999998775321111010 012335788999999999988765 56899999
Q ss_pred CCC------Ce-eeEEEeccCCCeeEEEEeCCCCCEEEEeeCC----CeEEEEcCccccCCCc--eeEEeccccc--cEE
Q 010883 263 LEA------NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGK--PAGVLMGHLE--GIT 327 (498)
Q Consensus 263 ~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~--~~~~~~~~~~--~v~ 327 (498)
+.+ +. ....+..+...+.. .|+ +++..|+..+.. +.|.+||+. .+. ....+..|.. .+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFT----DPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCEEE
T ss_pred CcccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCC----CCCcccceeccCCCCCCeEE
Confidence 986 43 35666667666655 466 456655555443 369999986 332 2344444544 688
Q ss_pred EEEEcCCCCEEEEEeCCCc--EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883 328 FIDSRGDGRYLISNGKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 405 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
.+.|++++.++++...++. |.+||+.+. +.+..+..+. ..+.
T Consensus 340 ~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----------------------------------~~~~~l~~~~--~~v~ 383 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLHDVKNTLQLHDLATG----------------------------------ALLKIFPLEV--GSVV 383 (710)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEEECCCS--SEEE
T ss_pred EEEEEcCCEEEEEEEECCEEEEEEEECCCC----------------------------------CEEEecCCCC--ceEE
Confidence 8999987788888888885 556666442 2333333332 1121
Q ss_pred EEEeccccCCCCcEEEEE-e---cCCeEEEEECCCCc
Q 010883 406 RCHFSPVYSTGQKYIYTG-S---HDSCVYVYDLVSGE 438 (498)
Q Consensus 406 ~~~~~~~~s~~~~~l~~g-~---~dg~i~iwd~~~~~ 438 (498)
.+.++|++..++.. + ..+.|++||+.+++
T Consensus 384 ----~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 ----GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ----EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ----EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 22456677665543 2 24789999998877
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=1.4e-14 Score=132.87 Aligned_cols=249 Identities=9% Similarity=0.068 Sum_probs=169.7
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
...+..+.....+++|+|+|+ +++++..++.|..|+..++ ..... .+...+.+++++|+|+++++...++.|.+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344555666788999999998 7888888999999999887 33222 23346899999999998877766789999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE----Ee-------------CCCeEEEEECCC
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GS-------------SDDCIYVYDLEA 265 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~----g~-------------~dg~i~vwd~~~ 265 (498)
||..+++.......... .....+.+++++|+|+++++ |+ ..+.|+.++..
T Consensus 95 ~d~~~g~~~~~~~~~~~------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 95 QREPGGEWESIADSFEG------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp ECSTTCCEEEEECEETT------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EcCCCCcEEEEeeccCC------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 99988775433221110 01114678999999998776 32 13467777665
Q ss_pred CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCce---eEEeccccccEEEEEEcCCCCEEEEEe
Q 010883 266 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~ 342 (498)
++ ...+..+......++|+ ++++.+++.+.++.|.+|++.. .+.. ...+..+...+..++++++|+++++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CC-EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 44 34455666778999997 7788777788889999999851 1222 22233344566789999999977666
Q ss_pred CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 343 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 343 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
++.|.+||... +.+..+..+.. ...+.|. +|+++.|++
T Consensus 236 -~~~v~~~~~~g-----------------------------------~~~~~~~~~~~---~~~~~f~---~~d~~~L~v 273 (296)
T 3e5z_A 236 -GDGVHVLTPDG-----------------------------------DELGRVLTPQT---TSNLCFG---GPEGRTLYM 273 (296)
T ss_dssp -TTEEEEECTTS-----------------------------------CEEEEEECSSC---CCEEEEE---STTSCEEEE
T ss_pred -CCeEEEECCCC-----------------------------------CEEEEEECCCC---ceeEEEE---CCCCCEEEE
Confidence 78899999763 44444444332 2222232 468888998
Q ss_pred EecCCeEEEEECCCCcE
Q 010883 423 GSHDSCVYVYDLVSGEQ 439 (498)
Q Consensus 423 g~~dg~i~iwd~~~~~~ 439 (498)
++.+ .+.-++..+.+.
T Consensus 274 ~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 274 TVST-EFWSIETNVRGL 289 (296)
T ss_dssp EETT-EEEEEECSCCBC
T ss_pred EcCC-eEEEEEcccccc
Confidence 8876 466667666543
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=6.4e-16 Score=148.02 Aligned_cols=261 Identities=11% Similarity=-0.006 Sum_probs=165.1
Q ss_pred EEEECCCCeEEEEEeecCC--CceeEEEEEeCCCCCeEEEEECC---CeEEEEECCCCceeccccccccccCccccccCC
Q 010883 156 RIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 230 (498)
Q Consensus 156 ~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (498)
...|..++..+..+..... +...+..++|+|||++|+.+... ..|.+|++.+++...+....
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~------------- 79 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK------------- 79 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS-------------
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC-------------
Confidence 3446677755544322111 11226678999999999887653 47899999888754432211
Q ss_pred CCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeE-------------------EEEeCCCCCE
Q 010883 231 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-------------------VCFGDESGHL 291 (498)
Q Consensus 231 ~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~ 291 (498)
......+.|+|||+.|+.++.++.|++||+.+++.......+...... +.|+ ++++.
T Consensus 80 ---~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~ 155 (396)
T 3c5m_A 80 ---GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSW 155 (396)
T ss_dssp ---CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSH
T ss_pred ---CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC-CCCcc
Confidence 111223689999999999999999999999988765544434332222 2344 45555
Q ss_pred EEEe-----eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCCCcc
Q 010883 292 IYSG-----SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSNA 359 (498)
Q Consensus 292 l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~ 359 (498)
++.. ..+..|.+||+. .++.. .+..+...+..+.|+| ++..|+..+.+ ..|.+||+....
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~----~g~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--- 227 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIE----TGELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--- 227 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETT----TCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---
T ss_pred eeeeeeccCCCcceEEEEECC----CCcEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---
Confidence 5443 356789999986 44433 3335667889999999 78877766543 358888875421
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC-----CeEEEEEC
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDL 434 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~ 434 (498)
...+..+.... ....+.|+|||++|+.++.+ +.|++||+
T Consensus 228 --------------------------------~~~l~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 228 --------------------------------VRKIKEHAEGE----SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp --------------------------------CEESSCCCTTE----EEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred --------------------------------eeEeeccCCCc----cccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 11111110001 12334778899988777654 45999999
Q ss_pred CCCcEEEEeccCCCCeeeeEEcC-CCCeEEEEe----------------CCCcEEEecCCCCC
Q 010883 435 VSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSS----------------WDGDVVRWEFPGNG 480 (498)
Q Consensus 435 ~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~~----------------~Dg~i~iw~~~~~~ 480 (498)
.+++...... .. ... +.|+| +|++|++++ .++.|++||+.++.
T Consensus 272 ~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 272 ETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp TTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 8887544332 11 233 89999 999888765 34789999987654
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=1.5e-15 Score=156.47 Aligned_cols=250 Identities=12% Similarity=0.042 Sum_probs=162.6
Q ss_pred CCCCceEEEEEcCCCCEEEEE-----ECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe----
Q 010883 129 QTTSRAYVSQFSADGSLFVAG-----FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 199 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~---- 199 (498)
+|...+..++|||||++||.+ +.+..|++||+.+++.+.. ...... ....++|+|||+.|++++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 466679999999999999943 3456899999999854300 011111 1267899999999999998766
Q ss_pred ---------EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC----eEEEEECCCC
Q 010883 200 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEAN 266 (498)
Q Consensus 200 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg----~i~vwd~~~~ 266 (498)
|++|++.++.......... ..+...+..+.|+|||++|+.++.++ .|++|+..++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHER------------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECC------------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEec------------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 9999998876321111000 12333688999999999998887666 7888877665
Q ss_pred eeeEEEeccCCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCce--eEEeccc--cccEEEEEEcCCCCEEE
Q 010883 267 KLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKP--AGVLMGH--LEGITFIDSRGDGRYLI 339 (498)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~--~~~~~~~--~~~v~~l~~~~~~~~l~ 339 (498)
+. ..+..+...+....+. .++ +++.+. .++.|.+||+. .+.. ...+..+ ...+..++++ ++.+++
T Consensus 263 ~~-~~l~~~~~~~~~~~~~-~g~-l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 263 DF-RLLVKGVGAKYEVHAW-KDR-FYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp SC-EEEEECSSCCEEEEEE-TTE-EEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred ce-EEeecCCCceEEEEec-CCc-EEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence 43 4555666667777774 444 555554 35889999986 3221 2333333 4457888888 677888
Q ss_pred EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcE
Q 010883 340 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 419 (498)
Q Consensus 340 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 419 (498)
+...|+..+||.+... +.....+..+.. .....+.++|+++.
T Consensus 335 ~~~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~~-----~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 335 EYLKDATSEVRVATLK---------------------------------GKPVRTVQLPGV-----GAASNLMGLEDLDD 376 (695)
T ss_dssp EEEETTEEEEEEEETT---------------------------------CCEEEECCCSSS-----SEECCCBSCTTCSE
T ss_pred EEEECCEEEEEEEeCC---------------------------------CCeeEEecCCCC-----eEEEEeecCCCCCE
Confidence 8889998888865421 112222222110 01233467778876
Q ss_pred EEEEe----cCCeEEEEECCCCcE
Q 010883 420 IYTGS----HDSCVYVYDLVSGEQ 439 (498)
Q Consensus 420 l~~g~----~dg~i~iwd~~~~~~ 439 (498)
++... ..+.|++||+.+++.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 66433 247899999988874
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=1e-13 Score=130.65 Aligned_cols=290 Identities=11% Similarity=-0.043 Sum_probs=184.3
Q ss_pred EEcCCCCEEEEEEC--CC---eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEE
Q 010883 138 QFSADGSLFVAGFQ--AS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHI 202 (498)
Q Consensus 138 ~~s~dg~~la~~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~i 202 (498)
...|+++++.+... .. .|.+||..+++.+..... + . .. .++++||+++++++. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g-~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G-F-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C-C-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 34477777666643 22 889999999876544322 2 1 22 899999999999886 3678999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEE-EeccCCCe
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDV 279 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~-~~~~~~~v 279 (498)
||..+.+............. .+......++|+|||++|+++.. ++.|.++| .+++.+.. +.. ..
T Consensus 102 iD~~t~~~~~~i~~~~~~~~---------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~-- 168 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRF---------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT-- 168 (373)
T ss_pred EECCCCcEEEEEECCCcccc---------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc--
Confidence 99988766544433200000 00013457899999999999874 47899999 99988776 532 22
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-----ccccc-EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----GHLEG-ITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~-v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
++.+.|.....+++.+.||.+.++|. ... ...... ....+ .....+.+++..++..+..+.+.+.|+.
T Consensus 169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~ 242 (373)
T 2mad_H 169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred -eEEEEeCCCceEEEEcCCCCEEEEEC-CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence 24444555667778889999999998 322 211110 11122 1234566666555545577889999986
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce----eEEEEEEEeccccCCCCcEEEEEec----
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSH---- 425 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~---- 425 (498)
..... .+..+..... ............++|+++.++++..
T Consensus 243 ~~~~~--------------------------------v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 243 AAGAT--------------------------------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CCcce--------------------------------EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 53211 0111110000 0000000011246778888888654
Q ss_pred ------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCCCC
Q 010883 426 ------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP 484 (498)
Q Consensus 426 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~~~ 484 (498)
++.|.++|+.+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+.+....
T Consensus 291 ~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999999998863 34689999999999 788777 589999999988765543
No 187
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.68 E-value=7.5e-13 Score=121.33 Aligned_cols=278 Identities=11% Similarity=0.035 Sum_probs=185.8
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
....+.+++++++|+++++...++.|.+|+.. +... ... .......+..+++.++++++++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE-VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE-CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 45678999999999988887778999999988 5332 222 22233478999999999877776667889999987 54
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-EeccCCCeeEEEEeCCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDES 288 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~ 288 (498)
.... .... ....+.++++.++|+++++...++.|..+|.. ++.... +......+..+++. ++
T Consensus 94 ~~~~-~~~~--------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~ 156 (300)
T 2qc5_A 94 FTEY-PLPQ--------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SD 156 (300)
T ss_dssp EEEE-ECSS--------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TT
T ss_pred eEEe-cCCC--------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CC
Confidence 4221 1110 11258899999999977777668899999987 554322 22344678899996 67
Q ss_pred CCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccc
Q 010883 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 367 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 367 (498)
++++++...++.|..||.. +... .....+...+..+++.++++++++....+.|.+||... .
T Consensus 157 g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~----------- 219 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-E----------- 219 (300)
T ss_dssp SSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-C-----------
T ss_pred CCEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-c-----------
Confidence 7877776668899999973 2222 22223445688999999998777776677899998732 1
Q ss_pred ccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE-EEeccC
Q 010883 368 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AALKYH 446 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~h 446 (498)
. ..+......... ..++++++|++.++...++.|..||. +++.. ..+...
T Consensus 220 -----------------------~-~~~~~~~~~~~~----~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~ 270 (300)
T 2qc5_A 220 -----------------------I-SEYDIPTPNARP----HAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE 270 (300)
T ss_dssp -----------------------E-EEEECSSTTCCE----EEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST
T ss_pred -----------------------E-EEEECCCCCCCc----eEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc
Confidence 1 111000000111 22345668886666666789999998 45443 223334
Q ss_pred CCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 447 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 447 ~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
...+.+++++++|.++++.. . .|..++.
T Consensus 271 ~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 271 NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 56789999999998666554 4 6666654
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=4.4e-14 Score=129.57 Aligned_cols=235 Identities=9% Similarity=-0.004 Sum_probs=160.2
Q ss_pred eEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 178 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 178 ~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
...+++|+|+++ +++++..++.|..|+..++ .... .. +...+.+++++++|+++++...++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~-~~----------------~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE-MH----------------PSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE-ES----------------SCSSEEEEEECTTCCEEEEETTTT
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE-EC----------------CCCCcceeeECCCCcEEEEecCCC
Confidence 577899999998 7777778899999999876 3221 11 122688999999999777776678
Q ss_pred eEEEEECCCCeeeEEEecc----CCCeeEEEEeCCCCCEEEE----ee-------------CCCeEEEEcCccccCCCce
Q 010883 257 CIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYS----GS-------------DDNLCKVWDRRCLNVKGKP 315 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s----~s-------------~dg~i~vwd~~~~~~~~~~ 315 (498)
.|.+||..+++........ ...+..+++. ++++++++ |+ ..+.|..++.. ..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~ 163 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GT 163 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SC
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC------CC
Confidence 9999999888754333221 2356789997 78888887 33 13456666642 23
Q ss_pred eEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEE
Q 010883 316 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 395 (498)
Q Consensus 316 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
+..+..+......++|+|+++.+++.+.++.|.+||+....... .....+
T Consensus 164 ~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------------------------------~~~~~~ 213 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------------------------------YQGVHF 213 (296)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------------------------------EEEEEE
T ss_pred EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------------------------------CCCeEe
Confidence 34445566678899999999999777778999999986211000 000111
Q ss_pred ccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEE-cCCCCeEEEEeCCCcEEEe
Q 010883 396 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW-HPSQPMLVSSSWDGDVVRW 474 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-sp~~~~l~s~~~Dg~i~iw 474 (498)
..+.. ....++++++|++.++. ++.|.+||.. ++.+..+..+.. +++++| .|+++.|++++.++ +..+
T Consensus 214 ~~~~~------~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~ 282 (296)
T 3e5z_A 214 TVEPG------KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSI 282 (296)
T ss_dssp CCSSS------CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEE
T ss_pred eCCCC------CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEE
Confidence 10000 01233567789866665 8889999986 888888887777 999999 68999888888764 4444
Q ss_pred cCCC
Q 010883 475 EFPG 478 (498)
Q Consensus 475 ~~~~ 478 (498)
+..+
T Consensus 283 ~~~~ 286 (296)
T 3e5z_A 283 ETNV 286 (296)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 4433
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.2e-14 Score=136.47 Aligned_cols=218 Identities=11% Similarity=0.089 Sum_probs=150.9
Q ss_pred eEEEEEeCCCCCeEEEEE---------CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883 178 TVTDTSLSPDQRHLVYAS---------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 248 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~ 248 (498)
.+..+++ ||++++... .++.|.+|++.+++...+ ..+..++|+|||++
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------------------~~~~~~~~SpDg~~ 72 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------------------ENATMPRISPDGKK 72 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------------------ESCEEEEECTTSSE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------------------ccCCCeEECCCCCE
Confidence 5677778 888887753 256799999988765333 15788999999999
Q ss_pred EEEEeCC---C--eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC-------------------------
Q 010883 249 LVAGSSD---D--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------------------------- 298 (498)
Q Consensus 249 l~~g~~d---g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d------------------------- 298 (498)
|+..+.+ + .|++||+.+++..... .+.. +..++|+ ++++.|+.++.+
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~~~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSSKKIL-EAKN-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEE-EESE-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------
T ss_pred EEEEEeccCCCcceEEEEECCCCceEEEE-cCCC-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 9887754 2 4888899888765443 3334 9999998 778877777632
Q ss_pred --CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCCCccccccCccccc
Q 010883 299 --NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-------AIKLWDIRKMSSNASCNLGFRSYE 369 (498)
Q Consensus 299 --g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~ 369 (498)
..|.+||+. .+..+..+.. . .+..+.|+||| +++++..++ ...||.+.+
T Consensus 150 ~~~~l~~~d~~----~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~--------------- 207 (347)
T 2gop_A 150 EKTTFWIFDTE----SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED--------------- 207 (347)
T ss_dssp CEEEEEEEETT----TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---------------
T ss_pred ccceEEEEECC----CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---------------
Confidence 578899986 4444244444 3 78889999999 777776542 334444332
Q ss_pred ccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecC--------CeEEEEECCCCcEEE
Q 010883 370 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--------SCVYVYDLVSGEQVA 441 (498)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~~~~~ 441 (498)
.....+..+ .. ...+ ||||++|+.++.+ ..|++|| +++...
T Consensus 208 --------------------~~~~~l~~~---~~----~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 208 --------------------GKEEKMFEK---VS----FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp --------------------TEEEEEEEE---ES----EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred --------------------CceEEeccC---cc----eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence 111111111 01 1112 7799988887754 4788888 666655
Q ss_pred EeccCCCCeee-eEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 442 ALKYHTSPVRD-CSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 442 ~~~~h~~~v~~-l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
....|...+.. +.|+ ++ ++++++.++.+++| +.
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 55667778886 9999 88 99999999999999 87
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=5e-14 Score=127.14 Aligned_cols=187 Identities=12% Similarity=0.103 Sum_probs=142.6
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccc
Q 010883 141 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 220 (498)
Q Consensus 141 ~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (498)
..+++|++++.++.|.+||.++|+.+.+..... ...+.++.++|+|++|+ +.++.|..||. +++.........
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~-- 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA-- 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT--
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC--
Confidence 346889999999999999999998776654322 12578899999999888 45788999999 777655544311
Q ss_pred cCccccccCCCCceecEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEEec------cCCCeeEEEEeCCCCCEEE
Q 010883 221 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 221 ~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~ 293 (498)
...+.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+++. +++++++
T Consensus 76 -------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv 140 (276)
T 3no2_A 76 -------------GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLV 140 (276)
T ss_dssp -------------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEE
T ss_pred -------------CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEE
Confidence 125788999999999999887 778888886 6776666542 11234456665 7899999
Q ss_pred EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
+...++.|..||. .++.+..+... ..+..+...++++.++++..++.|..+|..++
T Consensus 141 ~~~~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 141 PLFATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EETTTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EecCCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 9999999999997 46777776654 34556778899999999988889999998863
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.4e-14 Score=129.34 Aligned_cols=240 Identities=8% Similarity=-0.000 Sum_probs=160.9
Q ss_pred eEEEEEeCCCCCeEE-EEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 178 TVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
...+++++|++++++ +...++.|.+|+..+........ .+...+.+++++++|+++++.. ++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~p~~i~~~~~g~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF----------------NGLYQPQGLAVDGAGTVYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCC----------------CSCCSCCCEEECTTCCEEEEET-TT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEee----------------CCcCCcceeEECCCCCEEEEcC-CC
Confidence 578899999999666 44678899999976554322110 0112467899999998555554 88
Q ss_pred eEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883 257 CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 335 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 335 (498)
.|.+||....... .+. .....+..+++. ++++++++...++.|.+|+.. ..............+..+++++++
T Consensus 88 ~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 88 RVVTLAAGSNNQT-VLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp EEEEECTTCSCCE-ECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTTC
T ss_pred EEEEEeCCCceEe-eeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCCC
Confidence 9999998766543 232 233578899997 678888777788999999764 222222222233467889999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883 336 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 415 (498)
+++++...++.|.+||....... ....... ... ..+++++
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~--~~p----~~i~~d~ 201 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESNNQV----------------------------------VLPFTDI--TAP----WGIAVDE 201 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEE----------------------------------ECCCSSC--CSE----EEEEECT
T ss_pred CEEEEECCCCEEEEEecCCCceE----------------------------------eecccCC--CCc----eEEEECC
Confidence 97777777889999998752210 0000000 111 1235566
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+|.++++...++.|.+||............+...+.+++++++|+++++...++.|+++++....
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 88777777778899999987655443322344578999999999988888899999999987654
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=5e-14 Score=127.15 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=159.3
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883 187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
.+++|++++.++.|.+||.++++.......... ..+.++.++|+|++|+ +.++.|..||. ++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------------WECNSVAATKAGEILF--SYSKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---------------CCCCEEEECTTSCEEE--ECBSEEEEECT-TS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------------CCCcCeEECCCCCEEE--eCCCCEEEECC-CC
Confidence 467889999999999999999988665543210 1467889999999888 45778999999 88
Q ss_pred eeeEEEecc-CCCeeEEEEeCCCCCEEEEeeC-CCeEEEEcCccccCCCceeEEec------cccccEEEEEEcCCCCEE
Q 010883 267 KLSLRILAH-TSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYL 338 (498)
Q Consensus 267 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l 338 (498)
+.+.++..+ ...+.++.+. ++++++++.+. ++.|..+|. .++.+..+. .+......+.+.++|+++
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-----~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-----KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp CEEEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-----TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred CEEEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-----CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 888888764 3578888887 88999998887 778888875 455554443 222345566789999999
Q ss_pred EEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCc
Q 010883 339 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 418 (498)
Q Consensus 339 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 418 (498)
++...++.|..||.. + +.+..+...... +.....++|+
T Consensus 140 v~~~~~~~v~~~d~~-G----------------------------------~~~w~~~~~~~~-------~~~~~~~~g~ 177 (276)
T 3no2_A 140 VPLFATSEVREIAPN-G----------------------------------QLLNSVKLSGTP-------FSSAFLDNGD 177 (276)
T ss_dssp EEETTTTEEEEECTT-S----------------------------------CEEEEEECSSCC-------CEEEECTTSC
T ss_pred EEecCCCEEEEECCC-C----------------------------------CEEEEEECCCCc-------cceeEcCCCC
Confidence 999999999999986 3 344444432211 1123345899
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEeccCC------CCeeeeEEcCCCCeEEEEe
Q 010883 419 YIYTGSHDSCVYVYDLVSGEQVAALKYHT------SPVRDCSWHPSQPMLVSSS 466 (498)
Q Consensus 419 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~sp~~~~l~s~~ 466 (498)
++++++.++.|..+|..+|+.+..+..+. ..+..++..++|.++++..
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99999888899999999999998886432 2277888899998887763
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=9.7e-13 Score=130.37 Aligned_cols=301 Identities=11% Similarity=0.071 Sum_probs=195.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEeecCCCceeEEEEEeC----CCCCeEEEEEC-CCeEEEE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLS----PDQRHLVYASM-SPIVHIV 203 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~s~-d~~i~iw 203 (498)
...+..+.|||||++|++++.|+.|.+||+. +++.+..... + .....++|+ |||++++++.. ++.|.|+
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C--CCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 3456789999999999999999999999995 6655554332 1 146789999 69999888776 5899999
Q ss_pred ECCCCceeccccccccccCccccccCCCCcee-cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEE-EeccCCCee
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLR-ILAHTSDVN 280 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~-~~~~~~~v~ 280 (498)
|..+.+............ .....|.. .+..+..++++..++ ....+|.|.++|....+.... .........
T Consensus 272 D~~t~~~~~~i~~~~~~~------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~ 345 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTY------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 345 (567)
T ss_dssp ETTTCCEEEEEECCEECT------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred ECCCCcEEEEEecccccc------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence 998877665444321100 00001111 577888898876544 445679999999987543221 113345667
Q ss_pred EEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEecc-----ccc-cEEEEEEcCCCC-EEEEEe-CCCcEEEEe
Q 010883 281 TVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG-----HLE-GITFIDSRGDGR-YLISNG-KDQAIKLWD 351 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~-~v~~l~~~~~~~-~l~s~~-~dg~i~iwd 351 (498)
++.|+ +++++|+++. .++.|.++|+. .++.+..+.- |.+ .+. + ++|++. .++++. .++.|.++|
T Consensus 346 d~~~~-pdgr~~~va~~~sn~V~ViD~~----t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 346 DGGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred CceEC-CCCCEEEEEeCCCCeEEEEECC----CCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEec
Confidence 88997 6777776555 67899999997 5555444332 332 222 2 578744 444543 468999999
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec------
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------ 425 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------ 425 (498)
......... . .+.+..+...... ......+|++++|++...
T Consensus 419 ~~~~~~~~~--------~-------------------~kvv~~i~~~g~g------~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 419 TDPEGHPDN--------A-------------------WKILDSFPALGGG------SLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp CCTTTCTTT--------B-------------------TSEEEEEECSCSC------CCCEECCTTCSEEEEECTTCSSHH
T ss_pred CCCCCCccc--------c-------------------CEEEEEEecCCCC------CEEEEeCCCCCeEEEecCCCCCcc
Confidence 876321100 0 1334444432210 011245789999998763
Q ss_pred -CCeEEEEECCCC-----c-EEEEec--------cCCCCeeeeEEcCCCCeEEEEeC-----CCcEEEecCCCCCC
Q 010883 426 -DSCVYVYDLVSG-----E-QVAALK--------YHTSPVRDCSWHPSQPMLVSSSW-----DGDVVRWEFPGNGE 481 (498)
Q Consensus 426 -dg~i~iwd~~~~-----~-~~~~~~--------~h~~~v~~l~~sp~~~~l~s~~~-----Dg~i~iw~~~~~~~ 481 (498)
.++|.++|+.+. . ....+. .....+..+.|+|+|+.+..+.+ ++.|.|+|..+.+.
T Consensus 466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 358999999876 2 112331 12357899999999997666533 79999999877643
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=8.3e-14 Score=129.52 Aligned_cols=261 Identities=10% Similarity=0.020 Sum_probs=173.2
Q ss_pred CCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccc
Q 010883 151 QASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 227 (498)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (498)
.++.|.+||..+++....... ..........+.+. ++++.++...++.|.+||..+++........
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---------- 83 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---------- 83 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC----------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC----------
Confidence 378999999999854332211 11122346677773 4555555666799999999998875544211
Q ss_pred cCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEEeCCCCCEEEEee-CCCeE
Q 010883 228 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGS-DDNLC 301 (498)
Q Consensus 228 ~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~s-~dg~i 301 (498)
..+..++++++++.+++...++.|.+||..+++....+.... .....+++ .++.++++.. .++.|
T Consensus 84 -------~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 84 -------TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRI 154 (328)
T ss_dssp -------SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEE
T ss_pred -------CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEE
Confidence 157889999998544444378999999999998877765332 14567777 3444444443 48999
Q ss_pred EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCCCccccccCccccccc
Q 010883 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------QAIKLWDIRKMSSNASCNLGFRSYEWD 371 (498)
Q Consensus 302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 371 (498)
.++|+. ..+.+..+... .....+.++|+|++++++..+ +.|.++|..+.
T Consensus 155 ~viD~~----t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------------- 213 (328)
T 3dsm_A 155 LKIDTE----TDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------------- 213 (328)
T ss_dssp EEEETT----TTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----------------
T ss_pred EEEECC----CCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC----------------
Confidence 999997 56666555432 345678899999977776654 78999998763
Q ss_pred ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE--eccCCCC
Q 010883 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA--LKYHTSP 449 (498)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~ 449 (498)
+....+..... . ....++++|++++|+++.. .|.+||+.+++.... +..+...
T Consensus 214 ------------------~v~~~~~~~~g-~----~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 214 ------------------TVEKQFKFKLG-D----WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp ------------------EEEEEEECCTT-C----CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred ------------------eEEEEEecCCC-C----CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence 22222221100 0 1123467788999988765 899999988876321 1222456
Q ss_pred eeeeEEcC-CCCeEEEE----eCCCcEEEecCC
Q 010883 450 VRDCSWHP-SQPMLVSS----SWDGDVVRWEFP 477 (498)
Q Consensus 450 v~~l~~sp-~~~~l~s~----~~Dg~i~iw~~~ 477 (498)
...++++| ++.++++. ..++.|.+|+..
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 88999999 45555665 578999999987
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=2.6e-14 Score=148.25 Aligned_cols=277 Identities=14% Similarity=0.093 Sum_probs=173.8
Q ss_pred cCCCCEEEEEECCCe---EEEEE--CC---CCeEEEEEe----ecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEE
Q 010883 140 SADGSLFVAGFQASQ---IRIYD--VE---RGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHI 202 (498)
Q Consensus 140 s~dg~~la~~~~dg~---i~vw~--~~---~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~i 202 (498)
+|||++++....++. -.+|. .. .+. ...++ ...++...+..++|||||++|+.++.+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 489998887664432 44554 43 332 22221 122344578899999999999987654 36999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe--------------EEEEECCCCee
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC--------------IYVYDLEANKL 268 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~--------------i~vwd~~~~~~ 268 (498)
||+.+++..... .. ...+..++|+|| +.|+.++.++. |++|++.++..
T Consensus 194 ~dl~tg~~~~~~-~~----------------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~ 255 (741)
T 1yr2_A 194 VGVADGKPLADE-LK----------------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS 255 (741)
T ss_dssp EETTTCCEEEEE-EE----------------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG
T ss_pred EECCCCCCCCcc-CC----------------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch
Confidence 999998764321 00 012357899999 98988876553 99999987753
Q ss_pred --eEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCC--ceeEEeccccccEEEEEEcCCCCE
Q 010883 269 --SLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 269 --~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
...+. .+...+..+.|+ +++++|+..+.++ .|++||+. .+ .....+..+...+.... +|+|+.
T Consensus 256 ~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 256 ADQPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred hCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCE
Confidence 22222 233458899998 7888887777544 89999986 33 21444555555555543 488988
Q ss_pred EEEEeCC----CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecccc
Q 010883 338 LISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 413 (498)
Q Consensus 338 l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
|+..+.+ +.|.+||+.+.. . .....+..+.. .+..+ .+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~-~-------------------------------~~~~l~~~~~~--~l~~~----~~ 371 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGST-P-------------------------------RFDTVVPESKD--NLESV----GI 371 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSS-C-------------------------------EEEEEECCCSS--EEEEE----EE
T ss_pred EEEEECCCCCCCEEEEEeCCCCc-c-------------------------------ccEEEecCCCC--eEEEE----EE
Confidence 8877754 459999987521 0 01111122211 11111 22
Q ss_pred CCCCcEEEEEecCCeEEEEECC-CCcEEEEecc-CCCCeeeeEEcCCCCeEEEE----eCCCcEEEecCCCCC
Q 010883 414 STGQKYIYTGSHDSCVYVYDLV-SGEQVAALKY-HTSPVRDCSWHPSQPMLVSS----SWDGDVVRWEFPGNG 480 (498)
Q Consensus 414 s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~----~~Dg~i~iw~~~~~~ 480 (498)
+ ++.++++...|+..+||.+. +++.+..+.. +.+.|..++++|+++.|+.. ...++|++||+.+++
T Consensus 372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2 56788888889987777554 4666666764 36778999999999855522 234789999987654
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=4.7e-13 Score=124.89 Aligned_cols=205 Identities=12% Similarity=0.109 Sum_probs=143.3
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC----CeEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVH 201 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d----~~i~ 201 (498)
.+..+...+.+++|+|+|++++++..++.|.+||..++...... . .+...+.+++|+|+++++++...+ +.|.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-e--CCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 44556667899999999998888888999999999887543321 1 233479999999999988777666 6899
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEecc
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAH 275 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~ 275 (498)
+||..++......... .+...+.+++++|+|+++++... .+.|+.+|..+++.. .+..+
T Consensus 116 ~~d~~~~~~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 180 (333)
T 2dg1_A 116 AATENGDNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQN 180 (333)
T ss_dssp EECTTSCSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEE
T ss_pred EEeCCCCEEEEEEccC--------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecC
Confidence 9998877653221100 01226889999999987776543 356777777655543 33334
Q ss_pred CCCeeEEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCceeE--------EeccccccEEEEEEcCCCCEEEEEeCCCc
Q 010883 276 TSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAG--------VLMGHLEGITFIDSRGDGRYLISNGKDQA 346 (498)
Q Consensus 276 ~~~v~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~v~~l~~~~~~~~l~s~~~dg~ 346 (498)
...+..++|+ ++++.| ++.+.++.|.+||+... +.... .+.++ ..+..++++++|+++++...++.
T Consensus 181 ~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 181 ISVANGIALS-TDEKVLWVTETTANRLHRIALEDD---GVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp ESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTT---SSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCC---CcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE
Confidence 4567899997 677654 55556889999998521 11111 11222 36788999999998888878889
Q ss_pred EEEEeCC
Q 010883 347 IKLWDIR 353 (498)
Q Consensus 347 i~iwd~~ 353 (498)
|.+||..
T Consensus 256 v~~~d~~ 262 (333)
T 2dg1_A 256 VLVFNKR 262 (333)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999974
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=8.9e-14 Score=125.57 Aligned_cols=241 Identities=10% Similarity=0.030 Sum_probs=161.0
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883 133 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 133 ~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~ 211 (498)
...+++++++|++++ +...++.|.+|+..++.. .. ........+.+++++++++++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~--~~-~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--TV-LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EE-CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc--ce-EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 546788999999765422 11 1122223578899999999665554 889999998765432
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCE
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 291 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 291 (498)
.... .....+.++++.++|+++++...++.|.+|+..+.............+.++++. +++++
T Consensus 101 ~~~~----------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l 163 (270)
T 1rwi_B 101 VLPF----------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV 163 (270)
T ss_dssp ECCC----------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCE
T ss_pred eeec----------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCE
Confidence 2110 011257899999999977777778899999876554432222333467889997 67787
Q ss_pred EEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccc
Q 010883 292 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 371 (498)
Q Consensus 292 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 371 (498)
+++...++.|.+||.. ..........+...+..++++++|.++++...++.|.+||......
T Consensus 164 ~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-------------- 225 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-------------- 225 (270)
T ss_dssp EEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--------------
T ss_pred EEEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--------------
Confidence 7777778999999986 3333222223336788999999998888777788999999865211
Q ss_pred ceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCc
Q 010883 372 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 438 (498)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 438 (498)
...... ..... ..++++++|+++++...++.|++|++...+
T Consensus 226 ---------------------~~~~~~-~~~~p----~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 ---------------------TVLPFT-GLNTP----LAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---------------------EECCCC-SCSCE----EEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ---------------------eeeccC-CCCCc----eeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 000000 00111 223566789988888889999999986654
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=1.8e-13 Score=127.23 Aligned_cols=292 Identities=14% Similarity=0.049 Sum_probs=187.7
Q ss_pred EEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEE
Q 010883 137 SQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVH 201 (498)
Q Consensus 137 ~~~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~ 201 (498)
....|+++.+++... ++.|.+.|..+++.+..+..... + . ++++|||++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 345689988887765 67999999999977766544332 3 3 99999999988775 367899
Q ss_pred EEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCe
Q 010883 202 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
+||..+.+............. ........++|+|||++++++.. ++.|.++|+.+++.+.++.... .
T Consensus 113 viD~~t~~v~~~I~v~~g~r~---------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~ 181 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C 181 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E
T ss_pred EEECCCCeEEEEEECCCcccc---------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c
Confidence 999999887665543210000 00012446899999999998864 6899999999999988885321 1
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc----cccEE-EEEE-cCCCCEEEEEeCCCcEEEEeCC
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGIT-FIDS-RGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~v~-~l~~-~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
...+ |...+.+++.+.||.+.+.++... ++.......+ ..++. ...| .++|++++ .+.+|.|.+.|+.
T Consensus 182 -~~~~-P~g~~~~~~~~~DG~~~~v~~~~~---g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 182 -YHIF-PTAPDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS 255 (386)
T ss_dssp -EEEE-EEETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred -ceee-cCCCceeEEECCCCCEEEEECCCC---CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence 2233 566778888899999999998621 2222111111 11221 2355 36776555 5558999999987
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEcc---CceeEEEEEEEeccccCCCCcEEEEEec-----
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---HSVLRTLIRCHFSPVYSTGQKYIYTGSH----- 425 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~g~~----- 425 (498)
....... ..+..+.. ...... ...-...++++++.++....
T Consensus 256 ~~~~~v~-----------------------------~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 256 SGDAKFL-----------------------------PAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp TSSCEEC-----------------------------CCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTT
T ss_pred CCcceee-----------------------------cceeccccccccccccC--CCcceeeECCCCCeEEEEecccccc
Confidence 6331110 00000000 000000 00001134567888877653
Q ss_pred -----CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEE-eCCCcEEEecCCCCCCC
Q 010883 426 -----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 426 -----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~-~~Dg~i~iw~~~~~~~~ 482 (498)
.+.|.++|+.+++.+..+..- ..+.+|++++|++ +|+++ ..++.|.++|..+++..
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 257999999999999988632 3688999999997 66665 45899999999877543
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.62 E-value=1.7e-13 Score=129.79 Aligned_cols=290 Identities=12% Similarity=0.007 Sum_probs=186.3
Q ss_pred CCCCEEEEEECC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEEEEC
Q 010883 141 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDV 205 (498)
Q Consensus 141 ~dg~~la~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~iwd~ 205 (498)
++++++++.... +.|.++|..+++.+..+..... + .++++||+++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 466666655542 6999999999977776654432 3 799999999988876 3678999999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCeeEEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 283 (498)
.+.+......+...... ........++|+|||++++++.. ++.|.+.|+.+++.+.++.... . ..
T Consensus 157 ~t~~vv~~I~v~g~~r~---------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~ 223 (426)
T 3c75_H 157 VTFLPIADIELPDAPRF---------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YH 223 (426)
T ss_dssp TTCCEEEEEEETTCCCC---------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EE
T ss_pred CCCcEEEEEECCCcccc---------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--ee
Confidence 99887655543200000 00002345799999999999874 5789999999999988876321 1 22
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE----eccccccE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~v-~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
..|.....+++.+.||.+.+.+.. .++.... +.....++ ..+.+.+++..++.....+.+.+.|+......
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred eccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE
Confidence 223444667777788888887774 2222211 11111111 13467888888877778899999998652211
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-eeEEEEEEEeccccCCCCcEEEEEec----------CC
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSH----------DS 427 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg 427 (498)
... ......... .............++|+++.+++... ++
T Consensus 300 v~~-----------------------------~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 300 FRA-----------------------------PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp ECC-----------------------------CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred Eee-----------------------------eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence 000 000000000 00000000001245668887777643 35
Q ss_pred eEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCC
Q 010883 428 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA 482 (498)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~ 482 (498)
.|.++|+.+.+.+.++... .....++|+||++ +++++. .++.|.++|+.+.+..
T Consensus 351 ~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 351 FVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 7999999999999988632 2588999999999 888887 5999999999887644
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=1.4e-13 Score=142.67 Aligned_cols=202 Identities=13% Similarity=0.087 Sum_probs=134.0
Q ss_pred CCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe-----
Q 010883 130 TTSRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----- 199 (498)
Q Consensus 130 h~~~v~~~~~s~dg~~la~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~----- 199 (498)
|...+..++|||||++||.+..+ ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 44578899999999999987653 369999999986644311 1112357899999 99998887653
Q ss_pred ---------EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 010883 200 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEA 265 (498)
Q Consensus 200 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-----~i~vwd~~~ 265 (498)
|++|++.++.......... ..+...+..+.|+|||++|+..+.++ .|++||+.+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 8899987765321111100 01222478899999999998877544 899999988
Q ss_pred C--eeeEEEeccCCCeeEEEEeCCCCCEEEEeeC----CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEE
Q 010883 266 N--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 339 (498)
Q Consensus 266 ~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 339 (498)
+ +....+..+...+....+ +++..|+..+. ++.|.+||+.... ......+..+...+..+.+. ++.+++
T Consensus 304 ~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~ 378 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFA 378 (741)
T ss_dssp TEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEE
T ss_pred CCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEE
Confidence 7 314556566655555543 56666766665 3459999986211 23333444444556677887 566778
Q ss_pred EEeCCCcEEEEeCC
Q 010883 340 SNGKDQAIKLWDIR 353 (498)
Q Consensus 340 s~~~dg~i~iwd~~ 353 (498)
+...|+..+||.+.
T Consensus 379 ~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 379 SYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 88889887777654
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=1.1e-11 Score=113.48 Aligned_cols=237 Identities=9% Similarity=0.034 Sum_probs=162.3
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
..+.++++.++|+++++...++.|.+||.. ++...... .. +...+.++++.++|.++++...++
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-~~--------------~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL-PT--------------PDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC-SS--------------TTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC-Cc--------------ccCceeeEEECCCCCEEEeCCCCC
Confidence 468999999999977766667899999987 54432211 10 112688999999999777776688
Q ss_pred eEEEEECCCCeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCC
Q 010883 257 CIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 334 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 334 (498)
.|..||.. ++. ..+. .....+..+++. +++.++++...++.|.+||.. ..........+...+..+++.++
T Consensus 79 ~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 79 KIGRITKK-GII-KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDD----GKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp EEEEECTT-SCE-EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECTT
T ss_pred eEEEECCC-CcE-EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECCC----CCEEEecCCCCCCCCceEEEcCC
Confidence 99999986 333 2232 245678899996 678888877778899999973 21222222334457899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
++++++...++.|..||. +.. +..+......... ...+++
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~-----------------------------------~~~~~~~~~~~~~----~~i~~~ 191 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGD-----------------------------------ITEFKIPTPASGP----VGITKG 191 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCC-----------------------------------EEEEECSSTTCCE----EEEEEC
T ss_pred CCEEEEeCCCCEEEEEcC-CCc-----------------------------------EEEeeCCCCCCcc----eeEEEC
Confidence 988887777788999998 421 1111000000111 123456
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 415 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
++|++.++...++.|.+||. +++.... +..+...+.+++++++|.++++...++.|.+|+..
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 68887776666889999999 6664332 33455678999999999977776677889999973
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=7.7e-13 Score=122.25 Aligned_cols=248 Identities=12% Similarity=0.137 Sum_probs=162.0
Q ss_pred eEEEEEeCCCCCeEEE-------EECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEE
Q 010883 178 TVTDTSLSPDQRHLVY-------ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GREL 249 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~-------~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l 249 (498)
...+++|+++++++++ ...++.|.+||..+++...... .. ..++...+.+++++++ |+ |
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~-----------~~~~~~~~~~i~~~~~~g~-l 85 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE-----------VNGYGGIPAGCQCDRDANQ-L 85 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE-----------ETTEECCEEEEEECSSSSE-E
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc-----------cCCCCCCCceEEEecCCCc-E
Confidence 4678999999987777 5678899999988776543221 00 0123346889999999 76 4
Q ss_pred EEEeCCCeEEEEECCCCeeeEE-Eec----cCCCeeEEEEeCCCCCEEEEeeCC---------------CeEEEEcCccc
Q 010883 250 VAGSSDDCIYVYDLEANKLSLR-ILA----HTSDVNTVCFGDESGHLIYSGSDD---------------NLCKVWDRRCL 309 (498)
Q Consensus 250 ~~g~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~ 309 (498)
.+++..+.|.+||.. ++.... ... ....+.++++. ++++++++...+ +.|..||..
T Consensus 86 ~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 161 (314)
T 1pjx_A 86 FVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-- 161 (314)
T ss_dssp EEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred EEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence 444445579999998 665322 211 12357899996 678877776655 567777753
Q ss_pred cCCCceeEEeccccccEEEEEEc----CCCCEEEEE-eCCCcEEEEeCCC-CCCccccccCcccccccceeecCCcCccc
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSR----GDGRYLISN-GKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARD 383 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~s~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (498)
+. ...+..+......++++ |+++.|+.+ ..++.|.+||+.. .....
T Consensus 162 ---g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------ 213 (314)
T 1pjx_A 162 ---GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------ 213 (314)
T ss_dssp ---SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE------------------------
T ss_pred ---CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc------------------------
Confidence 22 22233344557889999 999766554 5678999999752 10000
Q ss_pred ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCC-eE
Q 010883 384 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-ML 462 (498)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l 462 (498)
......+..+.. ... ..++++++|++.++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++
T Consensus 214 -----~~~~~~~~~~~~-~~p----~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 214 -----KKVWGHIPGTHE-GGA----DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp -----EEEEEECCCCSS-CEE----EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred -----ceEEEECCCCCC-CCC----CceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 001111111110 011 1235667898888887889999999987877777766667899999999999 44
Q ss_pred EEEeCCCcEEEecCCCCC
Q 010883 463 VSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 463 ~s~~~Dg~i~iw~~~~~~ 480 (498)
++...++.|..|++....
T Consensus 284 v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEETTTTEEEEEECSSCB
T ss_pred EEeCCCCeEEEEeCCCCC
Confidence 555567899999987543
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=1.6e-12 Score=120.80 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=165.9
Q ss_pred EEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCC----ceeEEEEEeCCCCCeEEEEEC--CCeE
Q 010883 137 SQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPIV 200 (498)
Q Consensus 137 ~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~s~--d~~i 200 (498)
+++||||++|+++. .++.|.+||..+.+.+..+....+. ......++|+|||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999887765 3578999999998777665443211 113456899999999998874 6899
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEEecc----
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAH---- 275 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~---- 275 (498)
.++|+.+++......... . ...+....+.+++.+.||.+.+.++.+ ++.......+
T Consensus 163 sVID~~t~~vv~tI~v~g------------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD------------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp EEEETTTTEEEEEEECCS------------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred EEEECCCCcEEEEEECCC------------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 999999998766554321 1 112222445677777888888888876 5543222111
Q ss_pred CCCee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec----------cccccEEEEEEcCCCCEEEEEeC-
Q 010883 276 TSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGDGRYLISNGK- 343 (498)
Q Consensus 276 ~~~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~~~l~s~~~- 343 (498)
..++. ...|.++++++++ .+.+|.|++.|+.... .+....+. -..+....++++++++.++....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~--~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD--AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS--CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc--ceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 11221 2466546665555 5568999999985221 11111111 01223345777999888877643
Q ss_pred ---------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 344 ---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 344 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
...|.+.|+.+. +.+..+... .-.+++.++
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~----------------------------------kv~~~i~vg-------~~~~~lavs 339 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTG----------------------------------ERLAKFEMG-------HEIDSINVS 339 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred ccccccCCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcceEEEC
Confidence 246889998873 333333321 223455788
Q ss_pred CCCc-EEEEEec-CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCC
Q 010883 415 TGQK-YIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 458 (498)
Q Consensus 415 ~~~~-~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 458 (498)
+|++ +|++... ++.|.++|..+++.+.++.. .+.-+.+.+++|
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCCEEEECC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC-CCCCceeEECCc
Confidence 8987 6777554 89999999999999999873 244456677766
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=2.3e-12 Score=119.69 Aligned_cols=248 Identities=9% Similarity=-0.019 Sum_probs=163.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~ 211 (498)
.....+++. +++++++...++.|.+||..+++.+..... ...+..++++++++..++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 345667774 345556666679999999999877665521 235889999999855444447899999999988765
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 289 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 289 (498)
......... +.......+++ ++..|+++. .++.|.++|+.+++.+..+... .....+++. +++
T Consensus 119 ~~i~~g~~~-----------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~-~dG 183 (328)
T 3dsm_A 119 GYIECPDMD-----------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMD-KYN 183 (328)
T ss_dssp EEEECTTCC-----------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEEC-TTS
T ss_pred EEEEcCCcc-----------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEc-CCC
Confidence 443322100 01112345566 344555554 4889999999999988777543 345778886 778
Q ss_pred CEEEEeeCC----------CeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 290 HLIYSGSDD----------NLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 290 ~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
++++++..+ +.|.++|.. ..+....+... ......++++|+++.|+++.. .|.+||..+....
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CEEEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 777776654 789999986 55555554322 236789999999998887755 8999999764321
Q ss_pred cccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC-CCcEEEEE----ecCCeEEEEE
Q 010883 359 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTG----SHDSCVYVYD 433 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g----~~dg~i~iwd 433 (498)
... . +... ... ...++++| ++.+.++. ..++.|.+||
T Consensus 258 ~~~-----------------------------~---~~~~--~~~----p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 258 VRP-----------------------------F---LEFR--DTK----YYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SSC-----------------------------S---BCCC--SSC----EEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred eee-----------------------------e---ecCC--CCc----eEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 100 0 0000 001 12235666 45555555 5688999999
Q ss_pred CCCCcEEEEec
Q 010883 434 LVSGEQVAALK 444 (498)
Q Consensus 434 ~~~~~~~~~~~ 444 (498)
.. ++.+.++.
T Consensus 300 ~~-g~~~~~i~ 309 (328)
T 3dsm_A 300 PQ-GKLIDEFY 309 (328)
T ss_dssp TT-CCEEEEEE
T ss_pred CC-CCEEEEEE
Confidence 97 98888876
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.54 E-value=1.3e-11 Score=113.82 Aligned_cols=205 Identities=18% Similarity=0.210 Sum_probs=135.3
Q ss_pred CCceEEEEEcCCCCEEEE-------EECCCeEEEEECCCCeEEEEEe-ecCCCceeEEEEEeCCC-CCeEEEEECCCeEE
Q 010883 131 TSRAYVSQFSADGSLFVA-------GFQASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSPD-QRHLVYASMSPIVH 201 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~-------~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l~~~s~d~~i~ 201 (498)
-....+++|+++|+++++ +..++.|.+|+..+++...... ...++...+..++++++ ++++++ +..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence 345689999999998888 5678899999987775432111 00123346899999999 665544 4445799
Q ss_pred EEECCCCceecc-ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------CeEEEEECCC
Q 010883 202 IVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------DCIYVYDLEA 265 (498)
Q Consensus 202 iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d---------------g~i~vwd~~~ 265 (498)
+||.. ++.... ..... . .....+.+++++++|+++++...+ +.|..||..
T Consensus 96 ~~d~~-g~~~~~~~~~~~---~---------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSE---G---------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EEETT-SCEEECCSBCTT---S---------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EEeCC-CCEEEEEeccCC---C---------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 99988 665433 21110 0 111257899999999877766554 568888876
Q ss_pred CeeeEEEeccCCCeeEEEEe---CCCCC-EEEEeeCCCeEEEEcCccccCCCc-----eeEEecccc-ccEEEEEEcCCC
Q 010883 266 NKLSLRILAHTSDVNTVCFG---DESGH-LIYSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHL-EGITFIDSRGDG 335 (498)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~~---~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~~-~~v~~l~~~~~~ 335 (498)
++.. .+..+......++|+ +++++ ++++...++.|.+||+.. .+. ....+..+. ..+..++++++|
T Consensus 162 g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 162 GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCCCCCCCceEECCCC
Confidence 5443 333444556888886 13454 445556789999999751 121 222333333 567889999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 010883 336 RYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 336 ~~l~s~~~dg~i~iwd~~~ 354 (498)
+++++...++.|.+||..+
T Consensus 238 ~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp CEEEEEETTTEEEEECTTC
T ss_pred CEEEEEcCCCEEEEEcCCC
Confidence 9888888888999999874
No 206
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.51 E-value=4.2e-12 Score=130.45 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=134.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC-----
Q 010883 129 QTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 198 (498)
Q Consensus 129 ~h~~~v~~~~~s~dg~~la~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~----- 198 (498)
+|...+..++|||||++||.+. ....|++||+.+++.+..... . .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--D--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--E--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--C--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 4566899999999999998543 235799999999875443211 1 013568899 999999998774
Q ss_pred --------eEEEEECCCCceeccccccccccCccccccCCCC-ceecEEEEEEcCCCCEEEEEeC----CCeEEEEECCC
Q 010883 199 --------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEA 265 (498)
Q Consensus 199 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~g~~l~~g~~----dg~i~vwd~~~ 265 (498)
.|++|++.++.......... .. |...+..+.|+|||++|+.... ...|+++|+.+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 49999988765321111110 01 2224678999999998866543 35899999987
Q ss_pred Ce-eeEEEeccCCCeeEEEEeCCCCCEEEEeeCC---CeEEEEcCccccCCCce--eEEeccccccEEEEEEcCCCCEEE
Q 010883 266 NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKP--AGVLMGHLEGITFIDSRGDGRYLI 339 (498)
Q Consensus 266 ~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~ 339 (498)
+. ....+..+....... +++.++.+++....+ +.|..+|+. .+.. ...+..|...+. .|+++++.|+
T Consensus 269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA----NPGPAHWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC----CCCccccEEEecCCCCEE--EEEEECCEEE
Confidence 64 345566666666555 543555555555544 578999986 3222 345556666655 8889998887
Q ss_pred EEeCCC---cEEEEeCCC
Q 010883 340 SNGKDQ---AIKLWDIRK 354 (498)
Q Consensus 340 s~~~dg---~i~iwd~~~ 354 (498)
....++ .|++||+..
T Consensus 342 ~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 342 AEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEEEETTEEEEEEECTTS
T ss_pred EEEEECCeeEEEEEECCC
Confidence 766544 688888764
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=6.2e-12 Score=120.26 Aligned_cols=201 Identities=10% Similarity=0.077 Sum_probs=136.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC--eEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--~i~iwd~~~~ 208 (498)
-.....++|+++|+++++...++.|++||..++.... .... . . ... ++|+|+++.|+++..++ .|.+|+..++
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~-~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-F-K-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-C-C-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-C-C-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 3467899999999988888778999999998874332 2222 1 1 233 99999999999888766 7888887655
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE----EeccCCCe--eEE
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDV--NTV 282 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~----~~~~~~~v--~~~ 282 (498)
........... .....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..+
T Consensus 205 ~~~~~~g~~~~------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 205 WAPTRIGQLGS------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp TCEEEEEECCT------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred ceeEEeeeccc------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 43211100000 0112567899999555566677788999999987764322 11222222 399
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc---------------cccEEEEEEcCCCCEEEEEe-CCCc
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------------LEGITFIDSRGDGRYLISNG-KDQA 346 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---------------~~~v~~l~~~~~~~~l~s~~-~dg~ 346 (498)
+|+|.++.++++-..++.|+.|+.. +. +..+.++ ......++++|+|+++++-. .++.
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 9985467777777788999999974 22 2233222 23478999999999888877 7889
Q ss_pred EEEEeCCC
Q 010883 347 IKLWDIRK 354 (498)
Q Consensus 347 i~iwd~~~ 354 (498)
|+.||+..
T Consensus 347 I~~~~~~~ 354 (409)
T 3hrp_A 347 LRKLDILD 354 (409)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999755
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=1.1e-10 Score=109.90 Aligned_cols=242 Identities=11% Similarity=0.038 Sum_probs=155.8
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeec-CCC---ceeEEEEEeCCCCCeEEEEEC--CCe
Q 010883 136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI 199 (498)
Q Consensus 136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~~~~sp~~~~l~~~s~--d~~ 199 (498)
.++|||||++|+++. .++.|.+||..+.+.+...... ... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999887666554332 000 113457999999999999874 478
Q ss_pred EEEEECCCCceecc-ccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEe----
Q 010883 200 VHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---- 273 (498)
Q Consensus 200 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~---- 273 (498)
|.++| .+++.... .... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 150 v~viD-~t~~~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~ 207 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP--------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM 207 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC--------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence 99999 98876544 3221 124455554 45566778999999999 777653322
Q ss_pred -ccCCCe-eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----------ccccEEEEEEcCCCCEEEEE
Q 010883 274 -AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 274 -~~~~~v-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~l~s~ 341 (498)
....++ ....+.+.++.++++ +..+.+.+.|+.... ...+..+.- .......+.++|+++.++++
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAG--ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred ccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCc--ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence 111221 234455333444444 467899999985211 111122210 11234457889998887775
Q ss_pred eC----------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEecc
Q 010883 342 GK----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 411 (498)
Q Consensus 342 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (498)
.. ++.|.++|+.+. +.+..+.... ..+.+
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~----------------------------------~vv~~i~~g~-------~p~~i 323 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTSSQISLGH-------DVDAI 323 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCC----------------------------------EEEEEEECCC-------CcCeE
Confidence 43 357999998773 3334443221 12445
Q ss_pred ccCCCCc-EEEEEe-cCCeEEEEECCCCcEEEEe
Q 010883 412 VYSTGQK-YIYTGS-HDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 412 ~~s~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~ 443 (498)
.|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7888999 788777 4899999999999999884
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=1.2e-11 Score=113.18 Aligned_cols=231 Identities=9% Similarity=0.045 Sum_probs=146.2
Q ss_pred eEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 178 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 178 ~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
-.....|+|++. ++++...++.|..||..++..... .. ...+.+++++++|++++ +. ++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~~~~i~~~~dG~l~v-~~-~~ 73 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM-----------------DAPVSSVALRQSGGYVA-TI-GT 73 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC-----------------SSCEEEEEEBTTSSEEE-EE-TT
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC-----------------CCceEEEEECCCCCEEE-EE-CC
Confidence 356788999655 455555678999999988764221 11 12688999999999544 44 56
Q ss_pred eEEEEECCCCeeeEEEecc----CCCeeEEEEeCCCCCEEEEeeCC---------CeEEEEcCccccCCCceeEEecccc
Q 010883 257 CIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYSGSDD---------NLCKVWDRRCLNVKGKPAGVLMGHL 323 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~ 323 (498)
.|.+||..+++........ ...++.+++. ++++++++.... ..-.+|.+.. .+. ...+..+.
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---~g~-~~~~~~~~ 148 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFP---DHH-VKKYFDQV 148 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECT---TSC-EEEEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEEC---CCC-EEEEeecc
Confidence 7999999888754332221 2347889996 778866654321 2234444431 222 22333344
Q ss_pred ccEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883 324 EGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 402 (498)
Q Consensus 324 ~~v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (498)
...+.++|+|+++.|+ +.+.++.|.+||+......... .+.+..+.... .
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~---------------------------~~~~~~~~~~~--~ 199 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN---------------------------RRSVYKLEKEE--Q 199 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE---------------------------EEEEEECCGGG--C
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC---------------------------cEEEEECCCCC--C
Confidence 5678999999998765 4555788999997421100000 01111121111 1
Q ss_pred EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc-CCCCeEEEEe
Q 010883 403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS 466 (498)
Q Consensus 403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~~ 466 (498)
.. ..++++++|++.++....+.|..||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus 200 ~p----~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 200 IP----DGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EE----EEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CC----CeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 11 223566789888777778899999999999999988777789999998 8888554443
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=4e-12 Score=121.60 Aligned_cols=239 Identities=10% Similarity=0.151 Sum_probs=158.0
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD- 256 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg- 256 (498)
....++|+|+++++++...++.|++||..++.......... ... ++|+++++.|+++..++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-----------------~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-----------------GGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-----------------BCB-CEECTTSSEEEEEBSSTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-----------------CCc-eeEecCCCcEEEEecCCC
Confidence 58899999999977777777899999998877654432210 223 89999999998888765
Q ss_pred -eEEEEECCCCeeeEEE----eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE----eccccccE-
Q 010883 257 -CIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI- 326 (498)
Q Consensus 257 -~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~v- 326 (498)
.|++++...+.....+ ......+.++++.|.++. |+.+..++.|+.||.. ....... ..++...-
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSS
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECC----CCCEEEEecccccCCCCCCc
Confidence 8999998766543333 224567789999743554 4457778999999986 3322211 11222222
Q ss_pred -EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-----
Q 010883 327 -TFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----- 399 (498)
Q Consensus 327 -~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 399 (498)
..++|+|+ +.++++-..++.|+.|+..... ..+.++.
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------------------------------------~~~~g~~~~~g~ 312 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------------------------------------EWFCGSATQKTV 312 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCCE------------------------------------EEEEECTTCCSC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------------------------------------EEEEeCCCCCCc
Confidence 38999995 5666666677889999876420 0110000
Q ss_pred -e---eEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEeccC---------------CCCeeeeEEcCCC
Q 010883 400 -V---LRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYH---------------TSPVRDCSWHPSQ 459 (498)
Q Consensus 400 -~---~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h---------------~~~v~~l~~sp~~ 459 (498)
. ..........++++++|+++++-+ .++.|+.||+.++.. ..+.++ -.....+++++++
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 0 000000112346677999777777 789999999877764 333333 2357899999998
Q ss_pred CeEEEEeCCCcEEEecC
Q 010883 460 PMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 460 ~~l~s~~~Dg~i~iw~~ 476 (498)
.++++-..++.|+.+++
T Consensus 392 ~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEESTTCEEEEEEE
T ss_pred CEEEEECCCCeEEEEEe
Confidence 88888888888888765
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=3.2e-10 Score=103.65 Aligned_cols=237 Identities=9% Similarity=0.009 Sum_probs=160.9
Q ss_pred eeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 177 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
..+.++++.+++++.++...++.|.+|+.. ++.... ... .....+.++++.++|.++++...++
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF-EVP--------------TPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE-ECC--------------CCCCcceeEEECCCCCEEEEecCCC
Confidence 468899999999987777678999999987 554321 111 0112688999999998777766678
Q ss_pred eEEEEECCCCeeeE-EEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCcee-EEeccccccEEEEEEcCC
Q 010883 257 CIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGD 334 (498)
Q Consensus 257 ~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~ 334 (498)
.|..||.. ++... .+......+.++++. ++++++++...++.|..||.. +... ..+......+..+++.++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-----GTIYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-----SCEEEEECSSTTCCEEEEEECTT
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-----CCEEEccCCCCCCCceeEEECCC
Confidence 89999988 55432 222234678899996 678888777778899999974 2222 223334467899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccC
Q 010883 335 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 414 (498)
Q Consensus 335 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 414 (498)
++++++...++.|..||... . .. .+......... ...+++
T Consensus 157 g~l~v~~~~~~~i~~~~~~g-~----------------------------------~~-~~~~~~~~~~~----~~i~~d 196 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNTG-K----------------------------------LE-EYPLPTNAAAP----VGITSG 196 (300)
T ss_dssp SSEEEEETTTTEEEEECTTC-C----------------------------------EE-EEECSSTTCCE----EEEEEC
T ss_pred CCEEEEecCCCeEEEECCCC-c----------------------------------EE-EeeCCCCCCCc----ceEEEC
Confidence 99777666678899998732 1 11 11110000111 122455
Q ss_pred CCCcEEEEEecCCeEEEEECCCCcEEEE-eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCC
Q 010883 415 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 477 (498)
Q Consensus 415 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~ 477 (498)
++|++.++....+.|.+||. +++.... +..+...+.+++++++|.++++...++.|..|+..
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 67877776666788999998 5554332 33455678999999999977777667889999873
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=1.4e-11 Score=115.26 Aligned_cols=284 Identities=9% Similarity=-0.022 Sum_probs=170.3
Q ss_pred CceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEe----ecCCCceeEEEEEeCCCCCeEEEEEC-----CCeE
Q 010883 132 SRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASM-----SPIV 200 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~--dg~i~vw~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~s~-----d~~i 200 (498)
.....++++|+|+++++... ++.++||.+.++. +.... ....+-..+..++++|+++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57889999999999888642 3435566655553 22111 11123457999999999986665443 5789
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEe---CCCeEEEEECCCCeeeEEEeccC
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS---SDDCIYVYDLEANKLSLRILAHT 276 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~---~dg~i~vwd~~~~~~~~~~~~~~ 276 (498)
.+||+.+++........... ..+...+..+++++++..+ ++.. .++.|.+||+.+++....+..|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPI----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp EEEETTTTEEEEEEECCTTT----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred EEEECCCCeEEEEEECChhh----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 99999988755444332110 0112246789999865455 4444 57899999999888766554442
Q ss_pred CCee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-cEEEEeCCC
Q 010883 277 SDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRK 354 (498)
Q Consensus 277 ~~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~ 354 (498)
.... ...+. .++..+.+.+.+|.++.|. ..+..|+++|+++.|+.+..++ .+..++...
T Consensus 166 ~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 166 GIAPEDIDLV-IDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp TTSCCSCCCE-ETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred ccccccccee-ECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 2111 12333 3455666666777765553 2356899999999888887766 444444221
Q ss_pred CCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEEC
Q 010883 355 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 434 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 434 (498)
..... . .. . .+. ..+... ++.. ....++++++|+++++...++.|.+||.
T Consensus 227 ~~~~~-~--~~---------------~-~~~----~~~~~~-g~~g------~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 227 LSNLQ-L--TD---------------A-ELG----SKIERY-SEKP------ICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HTCTT-C--CH---------------H-HHH----TTCEEE-EECC------SCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred hcCCC-C--Ch---------------h-hhh----cceEec-ccCC------CCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 00000 0 00 0 000 000000 0000 0122356778999888888999999998
Q ss_pred CCCcEEEEecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 435 VSGEQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 435 ~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
.+++....... +...+.+++|.+++.++++.+..+.+.+|.
T Consensus 277 ~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 277 ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 56664333321 245688999999999888887666555554
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=2e-12 Score=120.72 Aligned_cols=175 Identities=14% Similarity=0.060 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--------EEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
+++.+++++...++++|+.++ +++|++..... .... ....+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999885 66798653210 1110 1112444 999999 99999998 889999999
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEE
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 284 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 284 (498)
+.+........ .|..++.++.+.+.. +++++.||.|.+||+.++.... +...|+|++|
T Consensus 113 v~sl~~~~~~~----------------~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 113 LEELSEFRTVT----------------SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp SSSTTCEEEEE----------------ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred chhhhccCccc----------------eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 97654322111 122257777777543 8889999999999999877643 4568999999
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCce--eEEe------c---cccccEEEEEEcCCCCEEEEEe
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVL------M---GHLEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~------~---~~~~~v~~l~~~~~~~~l~s~~ 342 (498)
+ +++ ++.|..||++++|+.. .... ...+ . +|...|.+|.|.+++.++++-.
T Consensus 171 S-pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 171 T-NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp C-SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred c-CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 8 666 6789999999999875 3332 3444 2 3678899999999998888643
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=4.3e-12 Score=118.51 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=127.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------ee-EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEc
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------LS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 305 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd 305 (498)
++..+++++...++++|+.++ +.+|++.... .. .....+.. |+.++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 588899999999999999885 6679875433 11 12234666 999999 67889888 889999999
Q ss_pred CccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCccccc
Q 010883 306 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 385 (498)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (498)
++.. ........|..++.++.+.+. .++++..||.|.+||+....
T Consensus 113 v~sl----~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~----------------------------- 157 (388)
T 1xip_A 113 LEEL----SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS----------------------------- 157 (388)
T ss_dssp SSST----TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-----------------------------
T ss_pred chhh----hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-----------------------------
Confidence 9833 344455566777888877654 38889999999999998632
Q ss_pred CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE--EEEe------c---cCCCCeeeeE
Q 010883 386 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAAL------K---YHTSPVRDCS 454 (498)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~l~ 454 (498)
... ......+.+|||+| ++.|..||.+++|+...++. ..++ . +|...|.++.
T Consensus 158 -----~~~----------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~ 220 (388)
T 1xip_A 158 -----TKQ----------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT 220 (388)
T ss_dssp -----EEE----------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred -----ccc----------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence 111 01112234677788 67899999999999887775 5566 2 4788999999
Q ss_pred EcCCCCeEEEE
Q 010883 455 WHPSQPMLVSS 465 (498)
Q Consensus 455 ~sp~~~~l~s~ 465 (498)
|.+++.+|++=
T Consensus 221 wl~~~~flv~y 231 (388)
T 1xip_A 221 ILSPQDFLAVF 231 (388)
T ss_dssp ESSSSEEEEEE
T ss_pred EecCCeEEEEE
Confidence 99999888763
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=3.9e-12 Score=118.53 Aligned_cols=270 Identities=9% Similarity=-0.078 Sum_probs=167.7
Q ss_pred eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE----------CCCeEEEEECCCCceeccccccccccCc
Q 010883 154 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGL 223 (498)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (498)
+|.++|..+++.+..+..... + .+.++||++++.++. .++.|.+||..+++............
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence 888999999987776554433 3 699999999999886 36789999999998876654431000
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC
Q 010883 224 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 299 (498)
Q Consensus 224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 299 (498)
+.. ......++++|||++++++.. +..|.+ +|+.+ +..+..- +. +.+.|.....+++.+.||
T Consensus 120 -~~~------g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 120 -FSV------GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp -CCB------SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTT
T ss_pred -ccc------CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCC
Confidence 000 002346899999999998874 467888 88877 3444321 11 122334556677778889
Q ss_pred eEEEEcCccccCC-CceeE----EeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCccccccccee
Q 010883 300 LCKVWDRRCLNVK-GKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 374 (498)
Q Consensus 300 ~i~vwd~~~~~~~-~~~~~----~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 374 (498)
.+.+.|+...... ++... .+.-...+. . .+++..++..+. +.+.+.|+......
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~---------------- 244 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT---------------- 244 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE----------------
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce----------------
Confidence 8888888620000 11110 011112333 3 566666666666 89999998652110
Q ss_pred ecCCcCcccccCCCCceEEEEccCc----eeEEEEEEEeccccCCCCcEEEEEec-C--------CeEEEEECCCCcEEE
Q 010883 375 MDYPPQARDLKHPCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSH-D--------SCVYVYDLVSGEQVA 441 (498)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~g~~-d--------g~i~iwd~~~~~~~~ 441 (498)
.+..+.... .............++||++.++++.. + +.+.++|+.+++.+.
T Consensus 245 ----------------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~ 308 (368)
T 1mda_H 245 ----------------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp ----------------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred ----------------EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence 000000000 00000000000246778888887644 2 356799999999999
Q ss_pred EeccCCCCeeeeEEcCCCC-eEEEEe-CCCcEEEecCCCCCCC
Q 010883 442 ALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA 482 (498)
Q Consensus 442 ~~~~h~~~v~~l~~sp~~~-~l~s~~-~Dg~i~iw~~~~~~~~ 482 (498)
.+.... ....++|+||++ .+++.. .++.|.++|+.+.+..
T Consensus 309 ~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 309 PISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 887443 588999999998 566666 5999999999877543
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=1.8e-10 Score=105.33 Aligned_cols=198 Identities=11% Similarity=0.052 Sum_probs=130.5
Q ss_pred ceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883 133 RAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 133 ~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~ 211 (498)
-.-+..|+|++ .++++...++.|..||..++... . .. ....+.+++++|+++++++ . ++.|.+||..+++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-~~---~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-VT---MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-EE---CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-Ee---CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 44578899965 55666667889999999887432 1 11 2236899999999995554 4 568999999887754
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEEEeccCCCee
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVN 280 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~ 280 (498)
........ .....+.+++++|+|+++++... .+.|+.++.. ++. ..+..+....+
T Consensus 87 ~~~~~~~~------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pn 152 (297)
T 3g4e_A 87 VLATVDND------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISN 152 (297)
T ss_dssp EEEECCTT------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEE
T ss_pred EEEecCCC------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeecccccc
Confidence 43322110 01235889999999996655422 2344444443 333 33334445678
Q ss_pred EEEEeCCCCCEE-EEeeCCCeEEEEcCccccCCCc-----eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 281 TVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 281 ~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.++|+ ++++.| ++.+.++.|.+||+... .+. ....+..+......++++++|++.++...++.|.+||..+
T Consensus 153 gi~~s-pdg~~lyv~~~~~~~i~~~~~d~~--~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 153 GLDWS-LDHKIFYYIDSLSYSVDAFDYDLQ--TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEEECTT--TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred ceEEc-CCCCEEEEecCCCCcEEEEeccCC--CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 99998 667655 55666889999987311 222 2223333445678999999999888887888899999875
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=6.2e-10 Score=103.18 Aligned_cols=224 Identities=15% Similarity=0.118 Sum_probs=140.8
Q ss_pred EEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 179 VTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 179 v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
.....|+|++. ++++...++.|..||..+++.... .. ...+.+++|+++|+++++. .+ .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~v~~i~~~~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL-----------------PFMGSALAKISDSKQLIAS-DD-G 110 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC-----------------SSCEEEEEEEETTEEEEEE-TT-E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC-----------------CCcceEEEEeCCCeEEEEE-CC-C
Confidence 45678999755 455555678999999988764321 11 1158899999999866654 44 4
Q ss_pred EEEEECCCCeeeEEEec---c-CCCeeEEEEeCCCCCEEEEeeC------CCeEEEEcCccccCCCceeEEeccccccEE
Q 010883 258 IYVYDLEANKLSLRILA---H-TSDVNTVCFGDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 327 (498)
Q Consensus 258 i~vwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 327 (498)
|.+||..+++....... . ...++++++. ++++++++... .+.|..++ . ++ +..+..+.....
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~-~-----g~-~~~~~~~~~~~~ 182 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA-K-----GK-VTKLFADISIPN 182 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE-T-----TE-EEEEEEEESSEE
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe-C-----Cc-EEEeeCCCcccC
Confidence 99999988875432211 1 1357889997 67777665442 23454444 2 22 222223344577
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-CCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 328 FIDSRGDGRYLISN-GKDQAIKLWDIR--KM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 328 ~l~~~~~~~~l~s~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
.++|+|+++.|+.+ +.++.|.+||+. +. .... ...+..+..... .
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------------------------~~~~~~~~~~~~--~ 231 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------------------------AEVFIDSTGIKG--G 231 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------------------------CEEEEECTTSSS--E
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----------------------------ceEEEECCCCCC--C
Confidence 89999999877554 456889999986 22 1000 011111111110 1
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEc-CCCCeEEEEe
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS 466 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~~ 466 (498)
. ...+++++|++.++...++.|.+||. +++.+..+..+...+++++|+ |++..|+.++
T Consensus 232 p----~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 232 M----DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp E----EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred C----CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 1 12345668887777767789999998 677777777777789999998 8887665443
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=1.6e-10 Score=106.23 Aligned_cols=204 Identities=11% Similarity=0.052 Sum_probs=130.9
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEE
Q 010883 124 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 124 ~~~l~~h~~~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~i 202 (498)
...+...........|+|+|+ +++++..++.|..|+.. +. ...... ....+..++++++|+++++...++.|.+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC---CCCccceeeECCCCCEEEEECCCCEEEE
Confidence 334444555677899999998 56667778999999984 43 222222 2336889999999997766555678999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEE----EeC-------------CCeEEEEECCC
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GSS-------------DDCIYVYDLEA 265 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~----g~~-------------dg~i~vwd~~~ 265 (498)
|+.. ++......... + .....+.++++.++|+++++ |.. .+.|+.+|..+
T Consensus 112 ~~~~-g~~~~~~~~~~---~---------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYA---G---------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp ECTT-SCEEEEECEET---T---------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred ECCC-CCEEEEEeccC---C---------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 9986 54432221110 0 00114678999999997775 332 35688888877
Q ss_pred CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC------CeEEEEcCccccCCCce--eEEe-ccccccEEEEEEcCCCC
Q 010883 266 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKP--AGVL-MGHLEGITFIDSRGDGR 336 (498)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~--~~~~-~~~~~~v~~l~~~~~~~ 336 (498)
++..... .....+.++|+ ++++.|+.+... +.|.+|++. .... ...+ .........++++++|+
T Consensus 179 g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~----~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWR----DGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp CCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEE----TTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred CcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEec----CCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 7654333 44567889997 778877776665 789999986 2221 1111 11223345688999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 010883 337 YLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 337 ~l~s~~~dg~i~iwd~~~ 354 (498)
+.++ ..+ .|.+|+...
T Consensus 252 lwv~-~~~-gv~~~~~~g 267 (305)
T 3dr2_A 252 LWSS-SGT-GVCVFDSDG 267 (305)
T ss_dssp EEEC-CSS-EEEEECTTS
T ss_pred EEEe-cCC-cEEEECCCC
Confidence 5544 444 499998753
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=8.9e-11 Score=107.85 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=143.1
Q ss_pred eEEEEEeCCCCC-eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 178 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 178 ~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
......|+|+++ ++++...++.|..|+. +++...... +...+..++++++|+++++...++
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~-----------------~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLD-----------------ATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEE-----------------SCSCEEEEEECTTSCEEEEETTTT
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeC-----------------CCCccceeeECCCCCEEEEECCCC
Confidence 456789999998 4555556789999998 444321111 112578999999999666655567
Q ss_pred eEEEEECCCCeeeEEEecc-----CCCeeEEEEeCCCCCEEEE----eeC-------------CCeEEEEcCccccCCCc
Q 010883 257 CIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESGHLIYS----GSD-------------DNLCKVWDRRCLNVKGK 314 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~ 314 (498)
.|.+|+.. ++.. .+..+ ...++.+++. ++++++++ |.. .+.|..||.. .++
T Consensus 108 ~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~----~g~ 180 (305)
T 3dr2_A 108 AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD----GSP 180 (305)
T ss_dssp EEEEECTT-SCEE-EEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS----SCC
T ss_pred EEEEECCC-CCEE-EEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC----CCc
Confidence 89999986 5432 22211 1346789996 78888876 332 2567777764 333
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCC
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 388 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (498)
.... . .......++|+||++.|+.+... +.|.+|++.... .
T Consensus 181 ~~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l------------------------------ 227 (305)
T 3dr2_A 181 LQRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L------------------------------ 227 (305)
T ss_dssp CEEE-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E------------------------------
T ss_pred EEEE-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c------------------------------
Confidence 3222 2 44567889999999988777665 689999886421 0
Q ss_pred CceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCC
Q 010883 389 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 468 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~D 468 (498)
.....+..... . ....++++++|++ .+++.+ .|.+|+. .++.+..+..+. .+.+++|+|+++.|+.++.+
T Consensus 228 -~~~~~~~~~~~-~----~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 228 -HDRRHFASVPD-G----LPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp -EEEEEEECCSS-S----CCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred -cCCeEEEECCC-C----CCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence 00000000000 0 0012245668884 444444 4999998 677777776554 58899999999888888776
Q ss_pred CcE
Q 010883 469 GDV 471 (498)
Q Consensus 469 g~i 471 (498)
+..
T Consensus 298 ~l~ 300 (305)
T 3dr2_A 298 CLW 300 (305)
T ss_dssp EEE
T ss_pred eEE
Confidence 533
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.37 E-value=6.4e-11 Score=121.63 Aligned_cols=243 Identities=15% Similarity=0.137 Sum_probs=153.1
Q ss_pred CCceeEEEEEeCCCCCeEEEEEC-----CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883 174 SLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 248 (498)
Q Consensus 174 ~~~~~v~~~~~sp~~~~l~~~s~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~ 248 (498)
++...+..++|||||++||.+.. ...|++||+.+++..... ... .....++|+ ||+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~----------------~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD----------------VKFSGISWL-GNEG 187 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE----------------EESCCCEEE-TTTE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC----------------ceeccEEEe-CCCE
Confidence 34557889999999999996542 247999999998754321 110 012467899 9999
Q ss_pred EEEEeCCC-------------eEEEEECCCCee----eEEEec-cCCCeeEEEEeCCCCCEEEEeeC----CCeEEEEcC
Q 010883 249 LVAGSSDD-------------CIYVYDLEANKL----SLRILA-HTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDR 306 (498)
Q Consensus 249 l~~g~~dg-------------~i~vwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~----dg~i~vwd~ 306 (498)
|+.++.+. .|++|++.++.. +..... |...+..+.|+ +++++|+.... +..|+++|+
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEET
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEEC
Confidence 99988774 399999987653 222223 44557889998 77777654432 358999998
Q ss_pred ccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CC---CcEEEEeCCCCCCccccccCcccccccceeecCCcCcc
Q 010883 307 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 382 (498)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (498)
... ......+..+....... +++++..|+..+ .+ +.|..+|+.+...
T Consensus 267 ~~~---~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------------------------- 317 (693)
T 3iuj_A 267 SQE---NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------------------------- 317 (693)
T ss_dssp TST---TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------------------------
T ss_pred CCC---CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------------------------
Confidence 622 11344555565555554 566666655443 33 5788899876321
Q ss_pred cccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-CC--eEEEEECCCCcEEEEec-cCCCCeeeeEEcCC
Q 010883 383 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPS 458 (498)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~ 458 (498)
.....+..+.... . .++++++.|+.... ++ .|++||+..+ ....+. .+.+.+..+.++++
T Consensus 318 -------~~~~~l~~~~~~~--~------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d 381 (693)
T 3iuj_A 318 -------AHWRDLIPERQQV--L------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHD 381 (693)
T ss_dssp -------GGCEEEECCCSSC--E------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTT
T ss_pred -------cccEEEecCCCCE--E------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCC
Confidence 0011222222111 1 34446777766655 44 6899998754 444443 34456888889999
Q ss_pred CCeEEEEeCC----CcEEEecCCCCC
Q 010883 459 QPMLVSSSWD----GDVVRWEFPGNG 480 (498)
Q Consensus 459 ~~~l~s~~~D----g~i~iw~~~~~~ 480 (498)
++.|+....+ +.|+.||+.++.
T Consensus 382 ~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 382 DPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCEEEEEecCCCCCCEEEEEECCCCe
Confidence 8866655444 789999987653
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.37 E-value=1.7e-10 Score=109.37 Aligned_cols=246 Identities=13% Similarity=0.109 Sum_probs=155.5
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeec-CCC---ceeEEEEEeCCCCCeEEEEEC--CCe
Q 010883 136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI 199 (498)
Q Consensus 136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~~~~sp~~~~l~~~s~--d~~ 199 (498)
.+++||||++|+++. .++.|.++|..+++.+..+... ... ......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888775 3678999999998777665432 100 113456899999999999874 578
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEE----ec
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI----LA 274 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~----~~ 274 (498)
|.+.|+.+++......... . ....|++ +.+++.+.||.+.+.++.+++..... ..
T Consensus 202 VsVID~~t~kvv~~I~v~g------------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD------------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp EEEEETTTTEEEEEEECCS------------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred EEEEECCCCeEEEEEEcCC------------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 9999999988765544321 1 1222322 45555666777777777555443221 11
Q ss_pred cCCCe-eEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--------cccccEEEEEEcCCCCEEEEEeC--
Q 010883 275 HTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--------GHLEGITFIDSRGDGRYLISNGK-- 343 (498)
Q Consensus 275 ~~~~v-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~~~-- 343 (498)
...++ ..+.|. +++..++..+..+.|.+.|.............+. ........++++|+++.+++...
T Consensus 262 ~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 262 EDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp TTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred CCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 11111 234566 5566666667788999999851110000000000 01112223689999887776542
Q ss_pred --------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCC
Q 010883 344 --------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 415 (498)
Q Consensus 344 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 415 (498)
++.|.++|+.+. +.+..+... ...+.+.|+|
T Consensus 341 ~~gthk~~s~~VsVID~~T~----------------------------------kvv~~I~vg-------~~P~gia~sp 379 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETG----------------------------------ERINKIELG-------HEIDSINVSQ 379 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEECC
T ss_pred ccccccCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcCeEEEcc
Confidence 357999999883 344443221 1245557888
Q ss_pred CCc-EEEEEe-cCCeEEEEECCCCcEEEEe
Q 010883 416 GQK-YIYTGS-HDSCVYVYDLVSGEQVAAL 443 (498)
Q Consensus 416 ~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~ 443 (498)
||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999 888888 4899999999999999887
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=1.6e-09 Score=100.31 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=129.1
Q ss_pred eEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883 134 AYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 212 (498)
Q Consensus 134 v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~ 212 (498)
....+|+|++. ++++...++.|..|+..++... .. .. ...+.+++|+|+++++++. . ..|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~---~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-AL---PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-EC---SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-EC---CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 46788999854 5566667889999999887432 22 11 2369999999999877754 3 459999998877543
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 286 (498)
....... .....+.+++++|+|+++++... .+.|+.++ +++.. .+..+......++|+
T Consensus 124 ~~~~~~~------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s- 187 (326)
T 2ghs_A 124 HAELESD------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS- 187 (326)
T ss_dssp EECSSTT------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC-
T ss_pred EeeCCCC------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc-
Confidence 3221100 01136889999999996665432 25677777 45543 333344567889998
Q ss_pred CCCCEEE-EeeCCCeEEEEcCc--cc-cCCC-ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 287 ESGHLIY-SGSDDNLCKVWDRR--CL-NVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 287 ~~~~~l~-s~s~dg~i~vwd~~--~~-~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
++++.++ +.+.++.|.+||+. .. .... .....+......+..+++.++|.++++...++.|.+||..
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 6776554 44567899999974 11 1111 1222333334557789999999988877777889999874
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.35 E-value=3.6e-09 Score=100.25 Aligned_cols=268 Identities=11% Similarity=0.033 Sum_probs=166.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCC------ceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 215 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~ 215 (498)
++..+++++.++.|..+|..+|+.+......... ...+... ...++..+++++.++.|..+|..+++......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3567888888999999999999776554432110 1122211 12245677888899999999999998765443
Q ss_pred ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe-----eEEEEeCCCCC
Q 010883 216 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGH 290 (498)
Q Consensus 216 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~ 290 (498)
..... ...++ . .+..+++++.++.|..+|..+++.+.......... ...... +.
T Consensus 131 ~~~~~------------~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~ 189 (376)
T 3q7m_A 131 VAGEA------------LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG 189 (376)
T ss_dssp CSSCC------------CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT
T ss_pred CCCce------------EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC
Confidence 32110 00111 1 13478888899999999999998877665432211 222332 35
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEecccccc-------EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCCCcccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-------ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC 361 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 361 (498)
.++.++.++.+..+|.. .++.+......... +..+...| .+..++.++.++.+..+|..+.+
T Consensus 190 ~v~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~----- 260 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ----- 260 (376)
T ss_dssp EEEECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-----
T ss_pred EEEEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-----
Confidence 67888889999999987 66665544321100 00011111 24567778889999999998743
Q ss_pred ccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEE
Q 010883 362 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 441 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 441 (498)
.+-....... . . +.. ++..|++++.++.|+.+|..+++.+.
T Consensus 261 -----------------------------~~w~~~~~~~-~---~----~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 261 -----------------------------IMWKRELGSV-N---D----FIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp -----------------------------EEEEECCCCE-E---E----EEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred -----------------------------EEeeccCCCC-C---C----ceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 2222111110 0 0 111 45678888889999999999999887
Q ss_pred Eecc-CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 442 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 442 ~~~~-h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.... ....+..... .+..|+.++.+|.|.++|..+++.
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 7652 2223333444 346788888999999999887653
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.29 E-value=3.2e-10 Score=115.74 Aligned_cols=311 Identities=12% Similarity=0.096 Sum_probs=179.3
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-------eE-EEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~ 214 (498)
+..|++++.++.|..+|..+|+.+.+......... .+ ..++. ++..|++++.|+.|..+|..+|+.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 56777788889999999999987776533211100 00 01111 4567888889999999999999886655
Q ss_pred ccc-ccccCccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEEeccC-----------
Q 010883 215 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHT----------- 276 (498)
Q Consensus 215 ~~~-~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~----------- 276 (498)
... ....... ....++. .++ .+++++ .+|.|+.||..+++.+-++....
T Consensus 148 ~~~~~~~~~~~-------~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 214 (689)
T 1yiq_A 148 DTRADHKRSYT-------ITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKG 214 (689)
T ss_dssp ECCSCTTSCCB-------CCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHH
T ss_pred cCcCCCCCCcc-------ccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccc
Confidence 432 1000000 0001111 144 445543 36899999999999887664210
Q ss_pred --------------------CCeeEEEEeCCCCCEEEEeeCCCe-------------------EEEEcCccccCCCceeE
Q 010883 277 --------------------SDVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAG 317 (498)
Q Consensus 277 --------------------~~v~~~~~~~~~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~ 317 (498)
.....+++. ++..+++.++.++. |..+|.. +++.+.
T Consensus 215 ~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W 289 (689)
T 1yiq_A 215 MEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVW 289 (689)
T ss_dssp HHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEE
T ss_pred ccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeE
Confidence 011256776 66778888887764 9999998 777776
Q ss_pred Eecc--cc-------ccEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCCccccccCccccccccee-------ecCC
Q 010883 318 VLMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW-------MDYP 378 (498)
Q Consensus 318 ~~~~--~~-------~~v~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 378 (498)
.+.. |. .++.......+|+ .++.++.+|.++++|.++++......... ..|.... +...
T Consensus 290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP--QSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CSSEEEEETTTTEEEECH
T ss_pred eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc--cccccccCccCCCcccch
Confidence 6543 21 1222222223554 78899999999999999876543221111 0111000 0000
Q ss_pred cCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---------------------------------
Q 010883 379 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------------------------------- 425 (498)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------------------------------- 425 (498)
. .. ...+..+....+.+..... ....++|+|+..++++...
T Consensus 368 ~-~~-~~~~~~~~~~~~p~~~Gg~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 441 (689)
T 1yiq_A 368 E-NA-AYWKNGKRNLVTPAFWGAH----DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPE 441 (689)
T ss_dssp H-HH-CTTTSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCS
T ss_pred h-hc-cccCCCCeeEeCCCccccc----CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCc
Confidence 0 00 0000000000000000000 0001244555555554321
Q ss_pred ------------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 426 ------------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 426 ------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
+|.|+.||+.+++.+..+..+ .++....+...+.+++.++.||.|+.||..+++..
T Consensus 442 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 442 GAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp SHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 478999999999999888754 34455567778889999999999999999988754
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=5.6e-10 Score=113.67 Aligned_cols=310 Identities=13% Similarity=0.133 Sum_probs=182.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce--------eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--------TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~ 214 (498)
+..|++++.++.|.-+|..+|+.+.+......... ....+++ ++..|++++.|+.|..+|..+|+.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777789999999999987776543221100 0011222 4667888889999999999999887655
Q ss_pred ccc-ccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCC---------
Q 010883 215 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD--------- 278 (498)
Q Consensus 215 ~~~-~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~--------- 278 (498)
... ........ ...++ . .++ .+++++. ++.|+.+|..+++.+-++......
T Consensus 155 ~~~~~~~~~~~~-------~~~p~----v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 155 NTFEGQKGSLTI-------TGAPR----V-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTTCCSSCBC-------CSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred cCCcCcCcCccc-------ccCcE----E-ECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 433 11000000 00011 1 133 4555543 689999999999988776532211
Q ss_pred -----------------------eeEEEEeCCCCCEEEEeeCCC-------------------eEEEEcCccccCCCcee
Q 010883 279 -----------------------VNTVCFGDESGHLIYSGSDDN-------------------LCKVWDRRCLNVKGKPA 316 (498)
Q Consensus 279 -----------------------v~~~~~~~~~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~ 316 (498)
...+++. +++.+++.++.++ .|..+|.. +++.+
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~----TG~~~ 296 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD----TGKYK 296 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEE
T ss_pred cccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC----CCCEE
Confidence 1346775 6677888877664 58899987 67776
Q ss_pred EEecc--cc-------ccEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccc
Q 010883 317 GVLMG--HL-------EGITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 384 (498)
Q Consensus 317 ~~~~~--~~-------~~v~~l~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (498)
..+.. |. .....+....+| ..++.++.+|.++++|..+++.......... .|... +. ...+.+
T Consensus 297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~~~~~-~d--~~g~~~ 371 (677)
T 1kb0_A 297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV--NWASG-YD--KHGKPI 371 (677)
T ss_dssp EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEE-EC--TTSCEE
T ss_pred EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc--Ccccc-cC--CCCcee
Confidence 65543 21 112223333467 6789999999999999998765433221110 00000 00 000000
Q ss_pred cC----CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-----------------------------------
Q 010883 385 KH----PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------------------------------- 425 (498)
Q Consensus 385 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----------------------------------- 425 (498)
.. ..+.....+.+..... ....++|+|++.++++...
T Consensus 372 ~~~~~~~~~~~~~~~P~~~G~~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 372 GIAAARDGSKPQDAVPGPYGAH----NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp ECGGGGCTTSCEECSSCTTCSS----CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred eccccCcCCCccEECcCccccc----CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 00 0000000000000000 0012345666666666543
Q ss_pred --------CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 426 --------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 426 --------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.|.|..||+.+++.+..+. +..++....+..++.+++.++.||.+++||..+++..
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 2789999999999998886 4455666677788888999999999999999988654
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=9.3e-11 Score=109.64 Aligned_cols=231 Identities=15% Similarity=0.078 Sum_probs=146.5
Q ss_pred eEEEEEeCCCCCeEEEEEC--CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-
Q 010883 178 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS- 254 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~- 254 (498)
.+..++++|+|+++++... ++.++||.+.+++........ ....++-..+..++++++|+++++-..
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQS----------GNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCC----------SSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcc----------cCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 6889999999998888642 343555655445432111100 011134457999999999986555433
Q ss_pred ----CCeEEEEECCCCeeeEEEecc------CCCeeEEEEeCCCCCEEEEee---CCCeEEEEcCccccCCCceeEEecc
Q 010883 255 ----DDCIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMG 321 (498)
Q Consensus 255 ----dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~ 321 (498)
++.|.+||+.+++.+..+... ...+..+++.+.++..+++.. .++.|.+||+. .++....+.+
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~ 163 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQG 163 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecC
Confidence 578999999999877666432 245689999744455555555 67899999986 5555555544
Q ss_pred ccccEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce
Q 010883 322 HLEGIT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 400 (498)
Q Consensus 322 ~~~~v~-~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (498)
|..... ...+.++|..+.+.+.++.++.|...
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~----------------------------------------------- 196 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG----------------------------------------------- 196 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCC-----------------------------------------------
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecc-----------------------------------------------
Confidence 322110 13344466666666677776555321
Q ss_pred eEEEEEEEeccccCCCCcEEEEEecCC-eEEEEECC---CCc-----EEE--EeccCCCCeeeeEEcCCCCeEEEEeCCC
Q 010883 401 LRTLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLV---SGE-----QVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDG 469 (498)
Q Consensus 401 ~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~---~~~-----~~~--~~~~h~~~v~~l~~sp~~~~l~s~~~Dg 469 (498)
...++++|||+.|+.+..++ .|+.++.. .+. ... ...++.+....++++++|.++++...++
T Consensus 197 -------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 197 -------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp -------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT
T ss_pred -------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC
Confidence 12236778999888887766 56555532 111 000 1113344567899999999999888899
Q ss_pred cEEEecC
Q 010883 470 DVVRWEF 476 (498)
Q Consensus 470 ~i~iw~~ 476 (498)
.|.+|+.
T Consensus 270 ~V~~~d~ 276 (343)
T 2qe8_A 270 AIGVITS 276 (343)
T ss_dssp EEEEEET
T ss_pred eEEEEEC
Confidence 9999998
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=7.3e-12 Score=118.18 Aligned_cols=203 Identities=14% Similarity=0.180 Sum_probs=114.2
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 010883 187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 266 (498)
Q Consensus 187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 266 (498)
++..+++++.|+.|+.||..+|+....... . ++.+..+..++..+++++.||.|+.||..++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-----------------CSCCCC-----CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-----------------CceecceEcCCCEEEEeCCCCEEEEEECCCC
Confidence 577899999999999999999987665443 1 2223334456777787789999999999998
Q ss_pred eeeEEEeccCC-Cee-EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883 267 KLSLRILAHTS-DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 267 ~~~~~~~~~~~-~v~-~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
+.+..+..+.. .+. +..+ ..+..+++++.|+.|+.||.. +++.+..+..+. ...++|++..+++++.|
T Consensus 70 ~~~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 70 EGLTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEE
T ss_pred ceeeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecC
Confidence 87665543211 111 1111 134578888999999999997 666666555443 23456688889999999
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCC---cEEE
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ---KYIY 421 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~ 421 (498)
+.|+.||.++++.... +.. .....+.++.+. ..++
T Consensus 140 g~v~a~d~~tG~~~W~----------------------------------~~~--------~~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 140 YTITMYDTKTRELRWN----------------------------------ATY--------FDYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp EEEECCCSSSSSCCCE----------------------------------EEE--------EEECCBCCCCCTTCCCCEE
T ss_pred CEEEEEECCCCCEEEe----------------------------------Eec--------ccccCccccCCccccceEE
Confidence 9999999987542211 110 001233444332 4577
Q ss_pred EEecCCeEEEEECCCCcEEEEeccCCCCee-eeEEcCCCC
Q 010883 422 TGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQP 460 (498)
Q Consensus 422 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~ 460 (498)
+++.||.|+.||..+|+.+..+.. ..++. ...+++++.
T Consensus 178 ~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred EECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 788999999999999999888763 34444 345566664
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=2.3e-09 Score=109.19 Aligned_cols=324 Identities=13% Similarity=0.110 Sum_probs=174.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeec-CCC-ceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCcee
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTME 211 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~-~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~ 211 (498)
++..|++++.|+.|..+|..+|+.+...... ... ...+. -+| .+..+++++. ++.|+.+|..+|+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~---~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTIT---GAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccc---cCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 4567888889999999999999877765433 100 01111 112 2344555443 689999999999876
Q ss_pred cccccccccc--Cc----------cccccCC----CCceecEEEEEEcCCCCEEEEEeCCC-------------------
Q 010883 212 SLANVTEIHD--GL----------DFSAADD----GGYSFGIFSLKFSTDGRELVAGSSDD------------------- 256 (498)
Q Consensus 212 ~~~~~~~~~~--~~----------~~~~~~~----~~h~~~i~~~~~s~~g~~l~~g~~dg------------------- 256 (498)
.......... .+ ....... .+.......++++|++..++.++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 5554322110 00 0000000 01111223578899888888887664
Q ss_pred eEEEEECCCCeeeEEEec--cC-------CCeeEEEEeCCCC---CEEEEeeCCCeEEEEcCccccCCCceeEEecccc-
Q 010883 257 CIYVYDLEANKLSLRILA--HT-------SDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL- 323 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~- 323 (498)
.|..+|..+++.+-.+.. |. .....+... .++ ..++.++.+|.++++|.. +++.+.......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPV 358 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCC
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEecccccccc
Confidence 599999999998877653 21 112222222 345 689999999999999997 666655443110
Q ss_pred ----------ccE------------------------EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccc-cccCcccc
Q 010883 324 ----------EGI------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS-CNLGFRSY 368 (498)
Q Consensus 324 ----------~~v------------------------~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~ 368 (498)
.++ ..++++|+..++++...+-...++.......-.. ........
T Consensus 359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 001 1467888888888776654444443321000000 00000000
Q ss_pred cccce--eecCCcCcccccCCCCceEEEEccCcee-EEEEEE---EeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 369 EWDYR--WMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 369 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
..... ...+... .+....+..++..... ...... .+...++.++.++++++.||.+++||+.+++.+..
T Consensus 439 ~~~~g~~~~~~~~~-----~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 439 GWNTAKFFNAEPPK-----SKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp TCCCCEEECSSCCC-----SCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccccccccCC-----CCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 00000 0000000 0001222222211100 000000 01223444678889999999999999999999999
Q ss_pred eccCC-CCeeeeEEcCCCCeEE-EEeC----------------CCcEEEecCCC
Q 010883 443 LKYHT-SPVRDCSWHPSQPMLV-SSSW----------------DGDVVRWEFPG 478 (498)
Q Consensus 443 ~~~h~-~~v~~l~~sp~~~~l~-s~~~----------------Dg~i~iw~~~~ 478 (498)
+.... ....-+.|..+|+.++ +.+. .+.+..|.+..
T Consensus 514 ~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 514 APTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 87433 2334456778887444 3322 36788888874
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=4.5e-08 Score=92.61 Aligned_cols=262 Identities=14% Similarity=0.089 Sum_probs=163.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccccccc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 221 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (498)
++..+++++.++.|..+|..+|+.............. ... .+..+++++.++.|..+|..+++............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~---p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSR---PVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSC---CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcC---CEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 4567888889999999999999776554332211111 111 24577788889999999999998765544321110
Q ss_pred CccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCC----------e-eEEEEeCCCCC
Q 010883 222 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGH 290 (498)
Q Consensus 222 ~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~ 290 (498)
. ..+...++ .. +..+++++.++.|..+|..+++.+......... + ..... .+.
T Consensus 177 ~-------~~~~~~~~----~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~ 240 (376)
T 3q7m_A 177 S-------LRGESAPT----TA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNG 240 (376)
T ss_dssp ---------CCCCCCE----EE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETT
T ss_pred e-------ecCCCCcE----EE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECC
Confidence 0 00001111 11 346888888999999999999887665422110 1 11112 245
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
.++.++.++.+..+|.. .++.+.... ......+.. ++..++.++.++.|..+|..+...
T Consensus 241 ~v~~~~~~g~l~~~d~~----tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~------------- 299 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLR----SGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT------------- 299 (376)
T ss_dssp EEEEECTTSCEEEEETT----TCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE-------------
T ss_pred EEEEEecCcEEEEEECC----CCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE-------------
Confidence 77788889999999987 666655443 233444444 356788888899999999987432
Q ss_pred cceeecCCcCcccccCCCCceEEEEcc-CceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCC
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 449 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~ 449 (498)
+-.... ..... ..+.. .+..|++++.+|.|+++|..+++.+.........
T Consensus 300 ---------------------~w~~~~~~~~~~------~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~ 350 (376)
T 3q7m_A 300 ---------------------LWTQSDLLHRLL------TSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG 350 (376)
T ss_dssp ---------------------EEEECTTTTSCC------CCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC
T ss_pred ---------------------EEeecccCCCcc------cCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc
Confidence 111110 00000 00111 2467888999999999999999998887754444
Q ss_pred eeeeEEcCCCCeEEEEeCCCcEEEec
Q 010883 450 VRDCSWHPSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 450 v~~l~~sp~~~~l~s~~~Dg~i~iw~ 475 (498)
+...... .+..|+.++.||.|+.|+
T Consensus 351 ~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 351 FQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp BCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred ceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 4332222 245788888999999886
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=1.6e-09 Score=110.52 Aligned_cols=310 Identities=10% Similarity=0.022 Sum_probs=165.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC---CCCeEEEEE-----CCCeEEEEECCCCceecc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYAS-----MSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~s-----~d~~i~iwd~~~~~~~~~ 213 (498)
++..|++++.|+.|..+|..+|+.+.......... ....+..+| ++..++..+ .++.|..||..+|+....
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 35678888899999999999998776654320110 011112223 444433322 368999999999987655
Q ss_pred ccccccccCccc-------cccCCC--------CceecEEEEEEcCCCCEEEEEeCCCe-------------------EE
Q 010883 214 ANVTEIHDGLDF-------SAADDG--------GYSFGIFSLKFSTDGRELVAGSSDDC-------------------IY 259 (498)
Q Consensus 214 ~~~~~~~~~~~~-------~~~~~~--------~h~~~i~~~~~s~~g~~l~~g~~dg~-------------------i~ 259 (498)
...........+ ...... ++......++++|++..+++++.++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 432110000000 000000 11111235788898888999887764 99
Q ss_pred EEECCCCeeeEEEec--cC-------CCeeEEEEeCCCCC---EEEEeeCCCeEEEEcCccccCCCceeEEecccc----
Q 010883 260 VYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---- 323 (498)
Q Consensus 260 vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---- 323 (498)
.+|..+++.+-.+.. |. ..+...... .++. .++.++.+|.++++|.. +++.+.......
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSWT 353 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSSE
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEeccccccccccc
Confidence 999999998877653 22 111111221 2343 78899999999999997 565553221000
Q ss_pred ------------------------cc-----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883 324 ------------------------EG-----------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 368 (498)
Q Consensus 324 ------------------------~~-----------v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 368 (498)
.. -..++++|+..++++...+....++....... ..........
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPK-RNPFKSMYQL 432 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCC-CCSCTTSCCC
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccc-cccccccccc
Confidence 00 01267888888888877665555554432100 0000000000
Q ss_pred cccceeecCC---------c-Cccc--ccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC
Q 010883 369 EWDYRWMDYP---------P-QARD--LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 436 (498)
Q Consensus 369 ~~~~~~~~~~---------~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 436 (498)
......+... + .+.. +-...++.+-.+..+... ....++..+.++++|+.||.|+.||..+
T Consensus 433 g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-------~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 433 GLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-------NGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp SSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-------CCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-------cCccceECCCEEEEECCCCcEEEEECCC
Confidence 0000000000 0 0000 000112222222211100 1112334678899999999999999999
Q ss_pred CcEEEEeccCCCC-eeeeEEcCCCC-eEEEE
Q 010883 437 GEQVAALKYHTSP-VRDCSWHPSQP-MLVSS 465 (498)
Q Consensus 437 ~~~~~~~~~h~~~-v~~l~~sp~~~-~l~s~ 465 (498)
|+.+..++...+. ..-+.|..+|+ ++++.
T Consensus 506 G~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 506 GEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 9999988744332 24567788888 44443
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.22 E-value=1.4e-08 Score=95.03 Aligned_cols=236 Identities=12% Similarity=0.062 Sum_probs=145.2
Q ss_pred eC--CCCCeEEEEE-CCCeEEEEECCCC----ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-
Q 010883 184 LS--PDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD- 255 (498)
Q Consensus 184 ~s--p~~~~l~~~s-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d- 255 (498)
++ +++++|++.+ .++.|.++|+.+. +........+..... + ......+..+|+| .++++..+
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~--------g-~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS--------G-YSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH--------C-EEEEEEEEECSSC-EEEEEEEET
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc--------C-CCcccceeECCCe-EEEEcCCCc
Confidence 36 7888877655 4788999999754 222222111110000 0 0135567888999 66665554
Q ss_pred -----CeEEEEECCCCeeeEEEeccCC---CeeEEEEeCCCCCEEEEee-------------------CCCeEEEEcCcc
Q 010883 256 -----DCIYVYDLEANKLSLRILAHTS---DVNTVCFGDESGHLIYSGS-------------------DDNLCKVWDRRC 308 (498)
Q Consensus 256 -----g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~s-------------------~dg~i~vwd~~~ 308 (498)
|.|.++|..+.+.+.++..... .-..+-|+ ++++.+++.. .+..|.+||+.
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~- 236 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR- 236 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-
T ss_pred CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-
Confidence 7899999999999888863222 23357777 7777888874 36899999997
Q ss_pred ccCCCceeEEeccc--cccEEEEEE--cCCCCEEEEEe------CCCcEEEEeCCCCCCccccccCcccccccceeecCC
Q 010883 309 LNVKGKPAGVLMGH--LEGITFIDS--RGDGRYLISNG------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 378 (498)
Q Consensus 309 ~~~~~~~~~~~~~~--~~~v~~l~~--~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
..+.+.++... ......+.| +|+++++++++ .+++|.+|.......
T Consensus 237 ---~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~--------------------- 292 (462)
T 2ece_A 237 ---KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW--------------------- 292 (462)
T ss_dssp ---TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE---------------------
T ss_pred ---CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce---------------------
Confidence 55666655432 123445555 99999888776 456788777643110
Q ss_pred cCcccccCCCCceEEEE--ccCcee----------EEEEEEEeccccCCCCcEEEEEec-CCeEEEEECCC---CcEEEE
Q 010883 379 PQARDLKHPCDQSVATY--KGHSVL----------RTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS---GEQVAA 442 (498)
Q Consensus 379 ~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~---~~~~~~ 442 (498)
.....+ ...... ...........+|+||++|+++.. .+.|.+||+.. .+.+..
T Consensus 293 -----------~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~ 361 (462)
T 2ece_A 293 -----------NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK 361 (462)
T ss_dssp -----------EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred -----------eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence 000000 000000 000011223357889999999877 68999999853 355555
Q ss_pred eccCC--------------CCeeeeEEcCCCCeEEEEe
Q 010883 443 LKYHT--------------SPVRDCSWHPSQPMLVSSS 466 (498)
Q Consensus 443 ~~~h~--------------~~v~~l~~sp~~~~l~s~~ 466 (498)
+.... +.-..++++|||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 54210 1358899999999988887
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=4.1e-09 Score=98.59 Aligned_cols=200 Identities=15% Similarity=0.027 Sum_probs=130.3
Q ss_pred EEc--CCCCEEEEEE-CCCeEEEEECCCC---eEEEEEee----c-CCCceeEEEEEeCCCCCeEEEEECC------CeE
Q 010883 138 QFS--ADGSLFVAGF-QASQIRIYDVERG---WKIQKDIL----A-KSLRWTVTDTSLSPDQRHLVYASMS------PIV 200 (498)
Q Consensus 138 ~~s--~dg~~la~~~-~dg~i~vw~~~~~---~~~~~~~~----~-~~~~~~v~~~~~sp~~~~l~~~s~d------~~i 200 (498)
.++ +++++|+..+ .++.|.|+|+.+. -.+.+.+. . .........+..+|+| +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 447 8888877655 5788999999754 12333331 0 1111245677889999 66665554 789
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-------------------CCCeEEEE
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------SDDCIYVY 261 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-------------------~dg~i~vw 261 (498)
.++|..+.+.+........... --..+.|+|+++.+++.. ....|.+|
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~-------------~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQY-------------LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCC-------------CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCcc-------------ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 9999999888776654322111 233578899999888874 36889999
Q ss_pred ECCCCeeeEEEecc--CCCeeEEEE--eCCCCCEEEEee------CCCeEEEEcCccccCCCceeEE--ecc--------
Q 010883 262 DLEANKLSLRILAH--TSDVNTVCF--GDESGHLIYSGS------DDNLCKVWDRRCLNVKGKPAGV--LMG-------- 321 (498)
Q Consensus 262 d~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~--~~~-------- 321 (498)
|+.+++.+.++... ......+.| + ++++++++++ .+++|.+|..... ....... +..
T Consensus 234 D~~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 234 DLRKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp ETTTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCC
T ss_pred ECCCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCcccccccc
Confidence 99998887777642 123455655 6 6777777666 5668877665411 1111111 010
Q ss_pred --------ccccEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883 322 --------HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 354 (498)
Q Consensus 322 --------~~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~ 354 (498)
-......|.+++||++|.++.. .+.|.+||+..
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0134678999999999887765 67899999864
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=115.49 Aligned_cols=183 Identities=12% Similarity=0.038 Sum_probs=108.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccc
Q 010883 245 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 245 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
++..+++++.||.|+.||..+++.+.++.. +.+.+..+. .++.++++++.||.|+.||.. .++.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~----tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSK----NNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC---------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECC----CCceeeeeeccCc
Confidence 567899999999999999999999887765 455554444 456678888899999999987 5555544443321
Q ss_pred c-EE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE
Q 010883 325 G-IT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 402 (498)
Q Consensus 325 ~-v~-~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (498)
. +. ...+. ++..+++++.|+.|+.||..+++... .+..+..
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w----------------------------------~~~~~~~-- 123 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ----------------------------------TLSSAFA-- 123 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE----------------------------------EecCCCc--
Confidence 1 10 00111 34567888889999999998854321 1211110
Q ss_pred EEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCC---CeEEEEeCCCcEEEecCCCC
Q 010883 403 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ---PMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 403 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~---~~l~s~~~Dg~i~iw~~~~~ 479 (498)
..++|++..|++++.|+.|+.||..+|+.+..+..+. ....+++++. ..+++++.||.|+.||..++
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 1223467889999999999999999998776654221 2333444432 46777889999999999877
Q ss_pred CC
Q 010883 480 GE 481 (498)
Q Consensus 480 ~~ 481 (498)
+.
T Consensus 194 ~~ 195 (369)
T 2hz6_A 194 DV 195 (369)
T ss_dssp CE
T ss_pred cE
Confidence 54
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=1.1e-09 Score=101.97 Aligned_cols=249 Identities=10% Similarity=0.042 Sum_probs=149.3
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeecCCC----ceeEEEEEeCCCCCeEEEEEC--CCe
Q 010883 136 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPI 199 (498)
Q Consensus 136 ~~~~s~dg~~la~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~s~--d~~ 199 (498)
.++|+|||++++++. .++.|.+||+.+++.+..+...... ......++++|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999888886 3678999999999877766443110 013456899999999999875 457
Q ss_pred EEE--EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeEE
Q 010883 200 VHI--VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-----NKLSLR 271 (498)
Q Consensus 200 i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~-----~~~~~~ 271 (498)
|.+ +|..+ . ....... . ..+.|++ +.+++.+.||.+.+.|+.+ ++....
T Consensus 149 v~V~~iD~~t--v-~~i~v~~------------------~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 149 AGLSVPGASD--D-QLTKSAS------------------C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp EEEEETTTEE--E-EEEECSS------------------C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred EEEEEEchhh--c-eEEECCC------------------c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 888 88876 1 1111110 0 1122333 2344555677777778776 333211
Q ss_pred ----EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc----------ccccEEEEEEcCCCCE
Q 010883 272 ----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRY 337 (498)
Q Consensus 272 ----~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~ 337 (498)
+.....+. . .+. +..++..+. +.|.+.|+... ..+.+..+.. .......++++|+++.
T Consensus 206 ~t~~i~vg~~P~---~-~~~-~~~~~~vs~-~~V~viD~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 206 CTGAQNCSSQAA---Q-ANY-PGMLVWAVA-SSILQGDIPAA--GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp SCTTSCBCSCCE---E-ETT-TTEEEECBS-SCCEEEECCSS--CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred eeeeeeCCCCcc---c-ccc-CCEEEEEcC-CEEEEEECCCC--cceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 11112232 3 434 444555555 89999998521 1111111110 0111122689999988
Q ss_pred EEEEeC---------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 338 LISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 338 l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
++++.. ++.+.++|+.+.+ .+..+... ...
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~----------------------------------vv~~i~vg-------~~p 316 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQ----------------------------------TSGPISNG-------HDS 316 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCC----------------------------------EEECCEEE-------EEE
T ss_pred EEEEeccccCcccccCCCEEEEECCCCe----------------------------------EEEEEECC-------CCc
Confidence 876533 2356699998843 23322211 123
Q ss_pred eccccCCCCcE-EEEEe-cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcC
Q 010883 409 FSPVYSTGQKY-IYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 457 (498)
Q Consensus 409 ~~~~~s~~~~~-l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 457 (498)
+.+.++|||++ +++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 44577889985 45555 489999999999999999985543 45666654
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.12 E-value=1.2e-08 Score=99.07 Aligned_cols=284 Identities=15% Similarity=0.126 Sum_probs=175.1
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeecC--------------------------------C---C-ceeEEEEEeCC---
Q 010883 146 FVAGFQASQIRIYDVERGWKIQKDILAK--------------------------------S---L-RWTVTDTSLSP--- 186 (498)
Q Consensus 146 la~~~~dg~i~vw~~~~~~~~~~~~~~~--------------------------------~---~-~~~v~~~~~sp--- 186 (498)
|.+|+..|.|+|+-+.++..+..+.... + . .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5678889999999888876665432221 0 0 01112233443
Q ss_pred --CCCeEEEEEC-CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE-c-CCCCEEEEEe--------
Q 010883 187 --DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-S-TDGRELVAGS-------- 253 (498)
Q Consensus 187 --~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s-~~g~~l~~g~-------- 253 (498)
||+++.+... ++.|.+.|+.+.++.....++... .+..+++ + |+++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~---------------~phg~~~~~~p~~~~v~~~~~~~~p~~~ 162 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK---------------GIHGLRPQKWPRSNYVFCNGEDETPLVN 162 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC---------------SEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC---------------CCcceeeeecCCCcEEEEecccccccCC
Confidence 7888887665 557999999998877655443211 4677887 4 8999998885
Q ss_pred ----------CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC------------------------
Q 010883 254 ----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN------------------------ 299 (498)
Q Consensus 254 ----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg------------------------ 299 (498)
.++.+.+.|..+.+...++.--. ....++++ +++.++++.+.+.
T Consensus 163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred CCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 24579999999999888876433 44667787 6788888877543
Q ss_pred --------------eEEEEcCccccCCCce-eEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCcccccc
Q 010883 300 --------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNL 363 (498)
Q Consensus 300 --------------~i~vwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 363 (498)
.|.+.|.+.. .+.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+......-..
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKE--ASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGG--GCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred eeEeccCCCeeEECcEEEEeCccc--CCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 2445555411 0222 222221 23446789999999877655 578899999986321000000
Q ss_pred CcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE-EecCCeEEEEECCC------
Q 010883 364 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVS------ 436 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~------ 436 (498)
.+....+....... ..+..+|+|+| ++++ ...|++|.+||+..
T Consensus 318 ----------------------~~~~~v~~~v~vG~-------gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~ 367 (595)
T 1fwx_A 318 ----------------------DPRSAVVAEPELGL-------GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA 367 (595)
T ss_dssp ----------------------CGGGGEEECCBCCS-------CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred ----------------------CcccceEEEcCCCC-------CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc
Confidence 00001111111111 11334678899 5554 45599999999987
Q ss_pred ----CcEEEEeccCCCCe-----eeeEEcCCCCeEEEEeC---CCcE----------EEecCCCC
Q 010883 437 ----GEQVAALKYHTSPV-----RDCSWHPSQPMLVSSSW---DGDV----------VRWEFPGN 479 (498)
Q Consensus 437 ----~~~~~~~~~h~~~v-----~~l~~sp~~~~l~s~~~---Dg~i----------~iw~~~~~ 479 (498)
.+.+.++..|-.+- ..+.++|||++|+++.. |..+ .++|+.++
T Consensus 368 g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 368 GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 56777777664432 34567899999998853 4431 77888543
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=4.3e-09 Score=97.62 Aligned_cols=267 Identities=15% Similarity=0.161 Sum_probs=163.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
...+.++...++|.+++ ++.+ |..+|. +++.+.... ..........+. +..|.+++.++.|..+|.. ++.
T Consensus 59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~---~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFD---TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSC---C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEE---CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 34567778887876444 4444 888886 442221111 011111122222 5567778888999999988 654
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 290 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (498)
........ ..+.++...+++. ++.++.++.|..+|.. ++....+......+.++... .++.
T Consensus 129 ~~~~~~~~----------------~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d-~~g~ 189 (330)
T 3hxj_A 129 KWRFKTKK----------------AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG-KDGT 189 (330)
T ss_dssp EEEEECSS----------------CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTCC
T ss_pred EEEEcCCC----------------ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc-CCCE
Confidence 33322111 1244456666776 6777888999999998 77766666555667777774 5666
Q ss_pred EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccc
Q 010883 291 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 370 (498)
Q Consensus 291 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 370 (498)
+++ ++ +.|..+| . .+............+.++...+++. |..++.++.|..+|...
T Consensus 190 l~v-~t--~~l~~~d-~----~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g---------------- 244 (330)
T 3hxj_A 190 IYF-GS--DKVYAIN-P----DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG---------------- 244 (330)
T ss_dssp EEE-ES--SSEEEEC-T----TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS----------------
T ss_pred EEE-Ee--CEEEEEC-C----CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC----------------
Confidence 554 44 8889999 4 5556655555556677888888876 55566677888887432
Q ss_pred cceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCe
Q 010883 371 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 450 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 450 (498)
..+..+....... ..+.+.+++ .|.+++.+|.|+.+|. +++.+..+......+
T Consensus 245 -------------------~~~~~~~~~~~~~------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~ 297 (330)
T 3hxj_A 245 -------------------TEKWRFKTGKRIE------SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWII 297 (330)
T ss_dssp -------------------CEEEEEECSSCCC------SCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCC
T ss_pred -------------------CEeEEeeCCCCcc------ccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccc
Confidence 2222222111100 112223344 5777888889999996 788777776556677
Q ss_pred eeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 451 RDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 451 ~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.++...+++. |..++.+|.+++......
T Consensus 298 ~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 298 ATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp SCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred cceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 8888878876 556888999999876544
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1.3e-08 Score=94.39 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=157.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~ 213 (498)
..++.+..+|. |.+++.++.|..|| .+++..... ......+.++...+++.+++ ++.+ |..+|. +++....
T Consensus 22 ~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~---~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 22 DSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF---KSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS---CGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGG
T ss_pred ccCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE---ecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEE
Confidence 34455666765 55566788899999 777554332 22233567777777776444 4433 888885 5544332
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEE
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 293 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 293 (498)
...... ......+. +..|.+++.++.|..+|.. ++.......+...+.++... +++. ++
T Consensus 93 ~~~~~~----------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~ 151 (330)
T 3hxj_A 93 FDTKKA----------------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IY 151 (330)
T ss_dssp SCC---------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EE
T ss_pred EECCCC----------------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EE
Confidence 221110 11112222 4468888889999999998 77666665555556666664 4555 56
Q ss_pred EeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccce
Q 010883 294 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 373 (498)
Q Consensus 294 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 373 (498)
.++.++.|..+|.. +.....+......+.++...+++.+++.. +.|..+| .+.
T Consensus 152 vgt~~~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g------------------ 204 (330)
T 3hxj_A 152 VGSNDNYLYAINPD-----GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG------------------ 204 (330)
T ss_dssp EECTTSEEEEECTT-----SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS------------------
T ss_pred EEcCCCEEEEECCC-----CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC------------------
Confidence 67788999999974 34444444444556677777787755544 7799998 442
Q ss_pred eecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeeee
Q 010883 374 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC 453 (498)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 453 (498)
..+..+.... ....++..+++| .|.+++.++.|..+|. +++.+..+......+..+
T Consensus 205 ----------------~~~~~~~~~~------~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~ 260 (330)
T 3hxj_A 205 ----------------TEKWNFYAGY------WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSP 260 (330)
T ss_dssp ----------------CEEEEECCSS------CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCC
T ss_pred ----------------cEEEEEccCC------cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccc
Confidence 1222221111 011233444455 4666777888999984 677776666555555666
Q ss_pred EEcCCCCeEEEEeCCCcEEEecC
Q 010883 454 SWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 454 ~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
.+.+++ .|..++.+|.|..+|.
T Consensus 261 ~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 261 VIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EECTTS-CEEEECTTCEEEEECT
T ss_pred eEcCCC-eEEEecCCCCEEEECC
Confidence 776666 4666777888888885
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.00 E-value=7.9e-08 Score=93.29 Aligned_cols=251 Identities=11% Similarity=0.052 Sum_probs=157.3
Q ss_pred CCCCEEEEEEC-CCeEEEEECCCCeEEEEEeecCCCceeEEEEEe-C-CCCCeEEEEE------------------CCCe
Q 010883 141 ADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-S-PDQRHLVYAS------------------MSPI 199 (498)
Q Consensus 141 ~dg~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~-s-p~~~~l~~~s------------------~d~~ 199 (498)
+||++|..... ++.|.+.|+.+.+....+....+. .+..+++ + |+++++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38888887765 557999999998665544322222 4778887 5 9999998885 2457
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----------------------
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----------------------- 256 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg----------------------- 256 (498)
+.++|.++.+......+.. ....++++|+|+++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vgg-----------------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~ 239 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-----------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 239 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-----------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred EEEEECCCCeEEEEEEeCC-----------------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence 9999999877655544322 123467788888887777443
Q ss_pred ---------------eEEEEECCC--Cee-eEEEeccCCCeeEEEEeCCCCCEEEE-eeCCCeEEEEcCcccc-------
Q 010883 257 ---------------CIYVYDLEA--NKL-SLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLN------- 310 (498)
Q Consensus 257 ---------------~i~vwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~i~vwd~~~~~------- 310 (498)
.|.|.|..+ ++. +..+.. .....++.++ |+++++++ +..+.+|.++|+....
T Consensus 240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 377777776 444 344432 3456788998 66775554 4568899999997321
Q ss_pred -CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883 311 -VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389 (498)
Q Consensus 311 -~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
.......... -......++|+|+|...++.-.|++|.+||+........- ....
T Consensus 318 ~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g------------------------~~~~ 372 (595)
T 1fwx_A 318 DPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAG------------------------EKVD 372 (595)
T ss_dssp CGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHT------------------------CSCC
T ss_pred CcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcc------------------------cccc
Confidence 0011222222 2346788999999955556778999999998751100000 0001
Q ss_pred ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCe----------EEEEECCCCc
Q 010883 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSC----------VYVYDLVSGE 438 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~----------i~iwd~~~~~ 438 (498)
+.+..+..|..... .........+|||++|++... |+. -.++|+..++
T Consensus 373 ~vi~kidV~yqpGh-~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 373 PIKDKLDVHYQPGH-LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CEEEEEECSSCEEE-EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeEEEeeccccccc-ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 44555554432111 222344578899999999865 332 2889996554
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.99 E-value=2.7e-06 Score=76.07 Aligned_cols=251 Identities=11% Similarity=0.055 Sum_probs=147.0
Q ss_pred CCEEEEEECCCeEEEEECCCCeEE----EEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceecccccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVT 217 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~ 217 (498)
|.+|+.+.. +.|+.++++..... ..... .....+..++|+|++..|..+. .++.|..++..++........
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~- 76 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ- 76 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-
Confidence 345565553 47888888764210 01111 1122578999999776666555 467999999876543221110
Q ss_pred ccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee
Q 010883 218 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 296 (498)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s 296 (498)
.-.....+++++++..|+.+ ...+.|.++++..................+++.|.++.++++..
T Consensus 77 ---------------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 77 ---------------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp ---------------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred ---------------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 00157889999976655555 45678999998754332222222246789999733444444443
Q ss_pred C--CCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCcccccccc
Q 010883 297 D--DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 372 (498)
Q Consensus 297 ~--dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 372 (498)
. .+.|..+++. +.....+ .........+++++++..|+.+ ...+.|.++|+....
T Consensus 142 ~~~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------------- 200 (267)
T 1npe_A 142 NRDNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------------- 200 (267)
T ss_dssp CSSSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE----------------
T ss_pred CCCCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc----------------
Confidence 3 4688888874 2222222 1233467899999987666544 456789999986411
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEeccCC-CCe
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHT-SPV 450 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~-~~v 450 (498)
.......... ...+ +. ++..|+.+. ..+.|.++|..+++.+..+.... ...
T Consensus 201 ------------------~~~~~~~~~~---P~gi----~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p 253 (267)
T 1npe_A 201 ------------------RRKVLEGLQY---PFAV----TS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253 (267)
T ss_dssp ------------------EEEEEECCCS---EEEE----EE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCC
T ss_pred ------------------eEEEecCCCC---ceEE----EE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcccccccc
Confidence 1111111110 0111 11 344455554 56899999999999988886433 246
Q ss_pred eeeEEcCCCC
Q 010883 451 RDCSWHPSQP 460 (498)
Q Consensus 451 ~~l~~sp~~~ 460 (498)
..+++.|++.
T Consensus 254 ~gi~~~~~~~ 263 (267)
T 1npe_A 254 YGITIALSQC 263 (267)
T ss_dssp CCEEEECSCC
T ss_pred ceeeecCccC
Confidence 7888888764
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=9e-08 Score=97.36 Aligned_cols=308 Identities=12% Similarity=0.144 Sum_probs=174.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCce-------eE-EEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~ 214 (498)
+..|++++.++.|.-+|..+|+.+.+......... .+ ..+++ .+..+++++.|+.|..+|..+|+.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 45677777889999999999987776533211100 00 01111 3567788888999999999999887655
Q ss_pred cccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccC---C--------
Q 010883 215 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT---S-------- 277 (498)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~---~-------- 277 (498)
........... ...++. . ++ .++++.. +|.|+.+|..+++.+-++.... .
T Consensus 144 ~~~~~~~~~~~-------~~~P~v----~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 144 QTTDPAKPYSI-------TGAPRV----V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp ECSCTTSSCBC-------CSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred ccCCCCCccee-------cCCCEE----E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 43211100000 001111 1 34 4555543 5899999999999887764211 0
Q ss_pred --------------------CeeEEEEeCCCCCEEEEeeCCCe-------------------EEEEcCccccCCCceeEE
Q 010883 278 --------------------DVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAGV 318 (498)
Q Consensus 278 --------------------~v~~~~~~~~~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~~ 318 (498)
....+++. +...+++.++.++. |..+|.. +++.+..
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~ 285 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWH 285 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEE
T ss_pred ccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeE
Confidence 11235775 56678888877763 8899987 7777666
Q ss_pred ecc--cc-------ccEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCCccccccCcccccccce-------eecCCc
Q 010883 319 LMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR-------WMDYPP 379 (498)
Q Consensus 319 ~~~--~~-------~~v~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 379 (498)
+.. |. .+.....+..+|+ .++.++.+|.++++|..+++......... ..|... .+....
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK--VTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CCSEEEECTTTCCEEECTT
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc--cccccccccccCCcccccc
Confidence 543 21 2233333333665 68899999999999998876543221111 001100 000000
Q ss_pred CcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE------------------------------------E
Q 010883 380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT------------------------------------G 423 (498)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------------------------g 423 (498)
.. . ..+....+.+..... ....++++|+..++++ .
T Consensus 364 ~~----~-~~~~~~~~p~~~G~~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 364 VR----Y-EKEPIVMWPSPFGAH----NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TT----C-SSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cc----c-cCCeeEECCCCcccc----CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 00 0 000000000000000 0000122333333222 1
Q ss_pred ecCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 424 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 424 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
..+|.|+.||+.+++.+.....+ .++....+...+.+++.++.||.|+.||..+++..
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 23488999999999998887643 34444556667888999999999999999877653
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.97 E-value=3.2e-07 Score=80.72 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=133.7
Q ss_pred ceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc
Q 010883 133 RAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 209 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~ 209 (498)
....++|++|+.++++.+. ++.|+++|+.+++.+....... +. ....+++. ++.|..+. .++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-SY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-TC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-Cc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 3578999999765555543 5799999999998776654322 21 12234443 44555544 57899999999887
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEE
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF 284 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~ 284 (498)
....+... ... + ..+++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|
T Consensus 98 v~~~i~~g-~~~--------------g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 98 NIKNFTHQ-MKD--------------G---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp EEEEEECC-SSS--------------C---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEECC-CCC--------------e---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 76554332 011 1 2345578777777778999999999998887776321 24678888
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------------cccEEEEEEcCCCCEE-EEEeCCCcEEEE
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYL-ISNGKDQAIKLW 350 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l-~s~~~dg~i~iw 350 (498)
. ++.+++....++.|.+.|.. +++.+..+.-. ....+.|+++|+++.| +++...+.+.+.
T Consensus 160 ~--dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 160 I--NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp E--TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred E--CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 6 45555555568899999998 77776666431 1356899999998654 556677889888
Q ss_pred eCCCC
Q 010883 351 DIRKM 355 (498)
Q Consensus 351 d~~~~ 355 (498)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 88764
No 242
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.96 E-value=3e-08 Score=101.05 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=77.6
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEE
Q 010883 136 VSQFSA-DGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI 202 (498)
Q Consensus 136 ~~~~s~-dg~~la~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~i 202 (498)
.+++.+ +|++++.|+.+. .+.+||..++.-.........+.....++++.++++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 899999987643 5889999876321111111122222334677899999999884 458999
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCeee
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-----DCIYVYDLEANKLS 269 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~d-----g~i~vwd~~~~~~~ 269 (498)
||..+++......+.... .-.+++..++|+.++.|+ .+ ..+.+||..+++..
T Consensus 270 yd~~t~~W~~~~~~~~~R---------------~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR---------------GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEECCCCSSCC---------------SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeECCCCCccc---------------cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 999887765443322111 123455667999999988 34 46999999887653
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.92 E-value=5.9e-07 Score=89.43 Aligned_cols=198 Identities=12% Similarity=0.108 Sum_probs=119.5
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCeEEEEEeecCCCc--------eeEEEEEeCCCCCe----EEEEECCCeEEEEECCCC
Q 010883 143 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR--------WTVTDTSLSPDQRH----LVYASMSPIVHIVDVGSG 208 (498)
Q Consensus 143 g~~la~~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~----l~~~s~d~~i~iwd~~~~ 208 (498)
+..|++++. ++.|.-+|. .+|+.+-+........ .....++++|.+.. |++++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666766 888999999 8897776654322110 00122445444444 888888999999999999
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEEeccCCC----
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHTSD---- 278 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~---- 278 (498)
+............... -...++. . ++ .+++++ .+|.|+.+|..+++.+-++......
T Consensus 142 ~~~W~~~~~~~~~~~~-------~~ssP~v----~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 142 ETVWKVENSDIKVGST-------LTIAPYV----V-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp CEEEEEECCCGGGTCB-------CCSCCEE----E-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CEEEeecCCCCCccce-------eecCCEE----E-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 8865544322110000 0001111 1 44 455554 3789999999999988766532211
Q ss_pred ---------------------------------e-eEEEEeCCCCCEEEEeeCC----------------CeEEEEcCcc
Q 010883 279 ---------------------------------V-NTVCFGDESGHLIYSGSDD----------------NLCKVWDRRC 308 (498)
Q Consensus 279 ---------------------------------v-~~~~~~~~~~~~l~s~s~d----------------g~i~vwd~~~ 308 (498)
+ ..+++. +...+++.+..+ +.|..+|..
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~- 286 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD- 286 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence 0 123453 456677777655 378888987
Q ss_pred ccCCCceeEEecccc----------ccEEEEEEc-CCC---CEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 309 LNVKGKPAGVLMGHL----------EGITFIDSR-GDG---RYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 309 ~~~~~~~~~~~~~~~----------~~v~~l~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
+++.+..++... .++. +... .+| ..++.++.+|.+.++|.++.+...
T Consensus 287 ---TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 287 ---TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp ---TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ---CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 666665554321 1222 2222 467 467778899999999998876543
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.91 E-value=4.2e-07 Score=90.50 Aligned_cols=311 Identities=12% Similarity=0.097 Sum_probs=167.3
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCeEEEEEeecCCCce-------eE-EEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883 143 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 212 (498)
Q Consensus 143 g~~la~~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~-------~v-~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~ 212 (498)
+..+++++. ++.|.-+|. .+|+.+.+......... .+ ..++. .+..+++++.|+.|..+|..+|+...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 889999999 89977766533221100 00 01112 35677788889999999999998866
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEEeccCCC--------
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD-------- 278 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~-------- 278 (498)
............ ....++. . ++ .+++++. ++.|+.+|..+++.+-++......
T Consensus 140 ~~~~~~~~~~~~-------~~~~P~v----~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~ 206 (571)
T 2ad6_A 140 EVEVCDPKVGST-------LTQAPFV----A-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKD 206 (571)
T ss_dssp EEECCCGGGTCB-------CCSCCEE----E-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred EecCCCCCccce-------eccCCEE----E-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcc
Confidence 544332110000 0011111 1 34 4666654 789999999999988766532111
Q ss_pred ------------------------------eeEEEEeCCCCCEEEEeeCC----------------CeEEEEcCccccCC
Q 010883 279 ------------------------------VNTVCFGDESGHLIYSGSDD----------------NLCKVWDRRCLNVK 312 (498)
Q Consensus 279 ------------------------------v~~~~~~~~~~~~l~s~s~d----------------g~i~vwd~~~~~~~ 312 (498)
...+++. +....++.+..+ +.|..+|.. +
T Consensus 207 ~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----t 281 (571)
T 2ad6_A 207 FNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----T 281 (571)
T ss_dssp TTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----T
T ss_pred cccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----C
Confidence 0124554 444566665532 358888987 6
Q ss_pred CceeEEecc--c--------cccEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCc
Q 010883 313 GKPAGVLMG--H--------LEGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 379 (498)
Q Consensus 313 ~~~~~~~~~--~--------~~~v~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (498)
++.+..+.. | ..++. +....+|+ .++.++.+|.+.++|..+.+.......... ..|.. .+...
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~-~~w~~-~~d~~- 357 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA-VNVFK-KVDLK- 357 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT-CCSEE-EECTT-
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC-ccccc-ccccc-
Confidence 666655542 1 12222 22234674 577888999999999988654433221110 00000 00000
Q ss_pred Cccccc------CCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-----------------------------
Q 010883 380 QARDLK------HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS----------------------------- 424 (498)
Q Consensus 380 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------------------------- 424 (498)
.+.-+. .+..+......+..... -...++|+|+..+|++.+
T Consensus 358 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 433 (571)
T 2ad6_A 358 TGTPVRDPEFATRMDHKGTNICPSAMGFH----NQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp TCSEEECGGGCCCTTCCEEEESSCTTCSS----CSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CCceecccccCCCCCCCceEECCCCcccc----CCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence 000000 00000000000000000 001123444544444432
Q ss_pred --------cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 010883 425 --------HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 482 (498)
Q Consensus 425 --------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~~ 482 (498)
.+|.|+.||+.+++.+.++... .++....+...+..++.++.||.|+.||..+++..
T Consensus 434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 3578999999999998887632 33444444445667777999999999999887654
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=6e-07 Score=91.32 Aligned_cols=167 Identities=15% Similarity=0.202 Sum_probs=100.6
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCceecc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESL 213 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~~~ 213 (498)
+..+++++.|+.|..+|..+|+.+......... ...+ .-+| .+..++++.. ++.|..+|..+|+....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~---~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI---TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC---CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee---cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 567888889999999999999877665432110 0111 1122 1334444432 58999999999988765
Q ss_pred ccccccccCccc-------cccCC-C-------CceecEEEEEEcCCCCEEEEEeCCC-------------------eEE
Q 010883 214 ANVTEIHDGLDF-------SAADD-G-------GYSFGIFSLKFSTDGRELVAGSSDD-------------------CIY 259 (498)
Q Consensus 214 ~~~~~~~~~~~~-------~~~~~-~-------~h~~~i~~~~~s~~g~~l~~g~~dg-------------------~i~ 259 (498)
...........+ ..... . ++......+++.+++..++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 543211000000 00000 0 1111223578888888888887766 499
Q ss_pred EEECCCCeeeEEEec--cC-------CCeeEEEEeCCCCC---EEEEeeCCCeEEEEcCccccCCCceeE
Q 010883 260 VYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAG 317 (498)
Q Consensus 260 vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~ 317 (498)
.+|..+++.+-.+.. |. .+.....+. .+++ .++.++.+|.++++|.. +++.+.
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~ 338 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLIS 338 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEec
Confidence 999999998877753 22 222222222 2443 68899999999999987 666553
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.88 E-value=8e-06 Score=85.28 Aligned_cols=285 Identities=7% Similarity=0.080 Sum_probs=171.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-----CCCceeEEEEEeCCCCCeEEEEECCCeEEEEEC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~ 205 (498)
...|.++...++|.+.+ |+.++-|.+|+..++... ..... .-....|.++...++|.+.+ |+.+ -|.+|+.
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 46789999888887655 444444889998876332 22111 11134699999998887554 4455 4889998
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-------cCCC
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSD 278 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~ 278 (498)
.++.............. -....|.++...++|. |..|+.++-|..|+..+.... .+.. ....
T Consensus 290 ~~~~~~~~~~~~~~~~~---------l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGS---------LSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNV 358 (795)
T ss_dssp TTTEEEEECCCTTSTTS---------CSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSS
T ss_pred CCCeEEEEecCCCCCCC---------CCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCe
Confidence 87765433221110000 1123699999999987 677777777999987665432 2211 2346
Q ss_pred eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--------cccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010883 279 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--------GHLEGITFIDSRGDGRYLISNGKDQAIKLW 350 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iw 350 (498)
|.++... .+++ |..|+.++-|..||.. ......... .....|.++...++++.|..|+.++-|.+|
T Consensus 359 V~~i~~d-~~g~-lWiGt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 359 VSCIVED-KDKN-LWIGTNDGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp EEEEEEC-TTSC-EEEEESSSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred eEEEEEC-CCCC-EEEEECCCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 8888874 5555 4567778788999975 322222111 123568999998888856667777779999
Q ss_pred eCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC---ceeEEEEEEEeccccCCCCcEEEEEecCC
Q 010883 351 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDS 427 (498)
Q Consensus 351 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 427 (498)
|..+.. +..+... .....+ ++....++|.+.+ |+.+
T Consensus 433 d~~~~~-----------------------------------~~~~~~~~~~l~~~~v----~~i~~d~~g~lwi-gt~~- 471 (795)
T 4a2l_A 433 HRNSGQ-----------------------------------VENFNQRNSQLVNENV----YAILPDGEGNLWL-GTLS- 471 (795)
T ss_dssp ETTTCC-----------------------------------EEEECTTTSCCSCSCE----EEEEECSSSCEEE-EESS-
T ss_pred eCCCCc-----------------------------------EEEeecCCCCcCCCee----EEEEECCCCCEEE-EecC-
Confidence 987632 1111100 000011 1112333566444 4444
Q ss_pred eEEEEECCCCcEEEEecc------CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 428 CVYVYDLVSGEQVAALKY------HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 428 ~i~iwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
-|.+||..+++....... ....|.++...++|.+.+.+. +-|..|+..+.
T Consensus 472 Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 472 ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence 489999887754432211 235789999999998666554 45777876543
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.87 E-value=1.8e-07 Score=82.34 Aligned_cols=196 Identities=10% Similarity=0.049 Sum_probs=128.8
Q ss_pred EEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccC-CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883 237 IFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313 (498)
Q Consensus 237 i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 313 (498)
...+.|++++.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.+.++.-.++.+.++|.. +.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----TL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----TT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----CC
Confidence 578899998754444443 5799999999999988875322 233456664 34555555678999999997 66
Q ss_pred ceeEEeccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 314 KPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 314 ~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
+.+..+... ..+ ..+++|++.++++..++.|.++|..+.. .+
T Consensus 97 ~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~----------------------------------v~ 139 (266)
T 2iwa_A 97 SNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFK----------------------------------LI 139 (266)
T ss_dssp EEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCC----------------------------------EE
T ss_pred cEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCc----------------------------------EE
Confidence 677666432 222 3345577767666678899999998743 22
Q ss_pred EEEccCc---eeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-------------CCCeeeeEEc
Q 010883 393 ATYKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWH 456 (498)
Q Consensus 393 ~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~s 456 (498)
..+.... ........ .|. +|.+.+....++.|.+.|..+++.+..+... ....+.++|+
T Consensus 140 ~~I~Vg~~~~p~~~~nel----e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNEL----EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp EEEECEETTEECCCEEEE----EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred EEEEECCCCcccccceeE----EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence 2222111 10011111 222 5655555556789999999999998888631 1345899999
Q ss_pred CCCC-eEEEEeCCCcEEEecCCCCC
Q 010883 457 PSQP-MLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 457 p~~~-~l~s~~~Dg~i~iw~~~~~~ 480 (498)
|+++ +++++...+.|.+-++....
T Consensus 215 ~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 215 QENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CCCCEEEEECCCCCeEEEEEEeccc
Confidence 9987 66666678889988887654
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.86 E-value=3e-06 Score=78.06 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=123.0
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC-----------------CceeEEEEEeCC-CCCeEEEE
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-----------------LRWTVTDTSLSP-DQRHLVYA 194 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~sp-~~~~l~~~ 194 (498)
...+++|+++|+++.++..++.|..|+..++... ....... ....+..+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3457889999997888888999999998765322 2111110 012578899998 555 5555
Q ss_pred ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeC-----------------CC
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS-----------------DD 256 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~-----------------dg 256 (498)
...+.|..+|..++.......... + ........+++.+ +|+..++-.. ++
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~---~---------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVD---G---------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEET---T---------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred ECCCCEEEEeCCCCEEEEecccCC---C---------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 555568888877654322211100 0 0011467899999 9986665432 36
Q ss_pred eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883 257 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 335 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 335 (498)
.|..||..+++..... ........++++ ++++.|+.+ +..+.|.+|++.... .+. ...+....+ ...+++.++|
T Consensus 166 ~v~~~d~~~~~~~~~~-~~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~-~~~-~~~~~~~~g-P~gi~~d~~G 240 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLL-KELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPK-KGT-AEVLVKIPN-PGNIKRNADG 240 (322)
T ss_dssp EEEEEETTTTEEEEEE-EEESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTT-TTC-EEEEEECSS-EEEEEECTTS
T ss_pred eEEEEeCCCCEEEEec-cCCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCc-CCc-cceEEeCCC-CCCeEECCCC
Confidence 7999998777653322 222445789997 677755544 566899999986221 111 111111223 6788999999
Q ss_pred CEEEEEeC----------CCcEEEEeCC
Q 010883 336 RYLISNGK----------DQAIKLWDIR 353 (498)
Q Consensus 336 ~~l~s~~~----------dg~i~iwd~~ 353 (498)
+++++... .+.|..+|..
T Consensus 241 ~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 241 HFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp CEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CEEEEecCcccccccCCCccEEEEECCC
Confidence 87776544 3556666653
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.83 E-value=1.2e-05 Score=83.95 Aligned_cols=282 Identities=11% Similarity=0.107 Sum_probs=169.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecc
Q 010883 134 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 134 v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~ 213 (498)
|.++...++|++.+ |+.++.|..|+..++.... .. .......|.++...+++.+.+ ++.++-+.+||..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK-VI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE-CC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE-ec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88999988887655 5555558899987763322 11 111234688888877777555 44444488899887665433
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec-------cCCCeeEEEEeC
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSDVNTVCFGD 286 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~ 286 (498)
......... -....|.++...++|. |..|+.+| |.+||..+++....... ....|.++...
T Consensus 251 ~~~~~~~~~---------l~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D- 318 (795)
T 4a2l_A 251 LHSPSNPKS---------ISSNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD- 318 (795)
T ss_dssp CCCTTCTTS---------CSCSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-
T ss_pred ecCCCCccc---------cCCCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-
Confidence 211000000 0123699999998887 55566664 89999887765332211 23568888874
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 359 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 359 (498)
.++. |..|+.++-|..|+... .. ...+. -....|.++...++|.+ ..|+.++-|..||..+..
T Consensus 319 ~~g~-lWigt~~~Gl~~~~~~~----~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~--- 388 (795)
T 4a2l_A 319 SQGG-MWLGTYFGGLNYYHPIR----NR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQR--- 388 (795)
T ss_dssp TTSC-EEEEESSSCEEEECGGG----GS-SEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCC---
T ss_pred CCcC-EEEEECCCCeEEeCCCc----cc-ceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCc---
Confidence 5665 45677777888888641 11 11111 12356999999888874 457777779999976521
Q ss_pred ccccCcccccccceeecCCcCcccccCCCCceEEEEccCc-------eeEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883 360 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-------VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 432 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 432 (498)
+..+.... ....+ .+....++|++|.+|+.++-|.+|
T Consensus 389 --------------------------------~~~~~~~~~~~~~~l~~~~v----~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 389 --------------------------------FTSYTLQEDESARGIGSNNI----KAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp --------------------------------EEEECCC------CCSCSCE----EEEEEETTTTEEEEEETTTEEEEE
T ss_pred --------------------------------EEEEecCCCCcccCCCCccE----EEEEEcCCCCEEEEEeCcCceeEE
Confidence 11111000 00111 112233467757778887789999
Q ss_pred ECCCCcEEEEec----cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 433 DLVSGEQVAALK----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 433 d~~~~~~~~~~~----~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
|..+++...... .+...|.++...+++.+.+.+ .+ -|.+|+..++
T Consensus 433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR 481 (795)
T ss_dssp ETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT
T ss_pred eCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC
Confidence 998876543321 134578999998888865554 44 4778886543
No 250
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.81 E-value=9.3e-06 Score=70.95 Aligned_cols=210 Identities=11% Similarity=0.087 Sum_probs=134.7
Q ss_pred cccCCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 126 PVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 126 ~l~~h~~~v~~~~~s~dg~~la-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
.+.+....+..++|+|++..|+ +...++.|...|.. ++.+..... .+. ...-.|++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DFV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 4556677899999999876555 56678889999988 655554432 222 3577888999888766655678899998
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCeeeEEEe-------c
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRIL-------A 274 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~---~~~~~~~~~-------~ 274 (498)
+.............. . + ...........++|+|+++.|+++.......+|.+. ....+..+. .
T Consensus 98 v~~~~~i~~~~~~~~--~--~---~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 98 LTPNSEVKILKKIKI--P--L---QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp ECTTCCEEEEEEEEC--C--C---SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred cCCCCeeeeeeeecc--c--c---ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 865442111111100 0 0 001123368899999998777777665444444443 111122221 1
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecccc---------ccEEEEEEcCCCCEEEEEeCCC
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISNGKDQ 345 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~s~~~dg 345 (498)
+...+..+++.|..+++++.......+..+|.. ++.+..+.-.. .....|++.++|++.++ +...
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n 244 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN 244 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc
Confidence 334678999998888888888889999999974 55544433221 25688999999985555 5656
Q ss_pred cEEEEe
Q 010883 346 AIKLWD 351 (498)
Q Consensus 346 ~i~iwd 351 (498)
.++.+.
T Consensus 245 ~~y~f~ 250 (255)
T 3qqz_A 245 RFYRFT 250 (255)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555554
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=7.4e-06 Score=81.52 Aligned_cols=308 Identities=11% Similarity=0.054 Sum_probs=154.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEEC------CCeEEEEECCCCceeccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESLA 214 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~------d~~i~iwd~~~~~~~~~~ 214 (498)
+..+++++.|+.|..+|..+|+.+.+..... +... ..+.-+| .+..+++++. ++.|..+|..+++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5678888889999999999997776644322 1000 0111122 2334555554 789999999999876554
Q ss_pred cccccccCc----------ccc------ccC------CCCceecEEEEEEcCCCCEEEEEeCC----------------C
Q 010883 215 NVTEIHDGL----------DFS------AAD------DGGYSFGIFSLKFSTDGRELVAGSSD----------------D 256 (498)
Q Consensus 215 ~~~~~~~~~----------~~~------~~~------~~~h~~~i~~~~~s~~g~~l~~g~~d----------------g 256 (498)
......... .+. ... ..+.......+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432211000 000 000 00000011235666766667666532 3
Q ss_pred eEEEEECCCCeeeEEEec--cCC----CeeEEEEeC--CCC---CEEEEeeCCCeEEEEcCccccCCCceeEEecccc--
Q 010883 257 CIYVYDLEANKLSLRILA--HTS----DVNTVCFGD--ESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-- 323 (498)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~--~~~----~v~~~~~~~--~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-- 323 (498)
.|..+|..+++.+-.+.. |.. .+....+.. .++ ..++.++.+|.+.++|.. +++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT----TCCEEEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC----CCCEEeeecccCCc
Confidence 699999999998877653 211 112222211 245 367788999999999987 555554432111
Q ss_pred -----------ccE--------------------------EEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcc
Q 010883 324 -----------EGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 324 -----------~~v--------------------------~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
.++ ..++++|+..++++...+....++.....-.......+
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g-- 426 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG-- 426 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC--
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc--
Confidence 111 23577888888887776544444433221000000000
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCceeE-EEEEE---EeccccCCCCcEEEEEecCCeEEEEECCCCcEEEE
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 442 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 442 (498)
....... .+... .......+..+....... ..... .+...+...+..++.++.||.|+.||..+|+.+..
T Consensus 427 ---~~~~~~~-~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 427 ---ATLAMYP-GPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp ---EEEEEEE-CTTST--TSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ---ccceecc-Ccccc--CCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 0000000 00000 000012222222111000 00000 01111222466788899999999999999999988
Q ss_pred eccCCCC-eeeeEEcCCCCeEEE
Q 010883 443 LKYHTSP-VRDCSWHPSQPMLVS 464 (498)
Q Consensus 443 ~~~h~~~-v~~l~~sp~~~~l~s 464 (498)
++..... -.-+.+..+|+.++.
T Consensus 501 ~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 501 FKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EECSSCCCSCCEEEEETTEEEEE
T ss_pred EeCCCCcEeeeEEEEECCEEEEE
Confidence 8743221 122345577874443
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=1.6e-05 Score=79.22 Aligned_cols=315 Identities=11% Similarity=0.061 Sum_probs=158.3
Q ss_pred EEEcCCCCE----EEEEECCCeEEEEECCCCeEEEEEeecCCC-ceeEEEEEeCC---CCCeEEEEE------CCCeEEE
Q 010883 137 SQFSADGSL----FVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP---DQRHLVYAS------MSPIVHI 202 (498)
Q Consensus 137 ~~~s~dg~~----la~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~~~~sp---~~~~l~~~s------~d~~i~i 202 (498)
++++|.+.. |+.++.|+.|..+|..+|+.+.+....... ...++ -+| ++ .+++++ .++.|+.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~---ssP~v~~g-~V~vg~~g~e~g~~g~v~A 186 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLT---IAPYVVKD-KVIIGSSGAELGVRGYLTA 186 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETT-EEEECCBCGGGTCCCEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceee---cCCEEECC-EEEEEecccccCCCCeEEE
Confidence 345444434 788888999999999999877664332200 00111 112 44 444444 3789999
Q ss_pred EECCCCceeccccccccccCc------cccc----------cCCCC----c-eecE-EEEEEcCCCCEEEEEeCC-----
Q 010883 203 VDVGSGTMESLANVTEIHDGL------DFSA----------ADDGG----Y-SFGI-FSLKFSTDGRELVAGSSD----- 255 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~------~~~~----------~~~~~----h-~~~i-~~~~~s~~g~~l~~g~~d----- 255 (498)
+|..+|+.............. .+.. ..-.+ + ...+ ..+++.++...++.+..+
T Consensus 187 ~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~ 266 (599)
T 1w6s_A 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWN 266 (599)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred EECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcccc
Confidence 999999876554433211000 0000 00000 0 0001 134566777777777665
Q ss_pred -----------CeEEEEECCCCeeeEEEeccCCC------e---eEEEEeCCCC---CEEEEeeCCCeEEEEcCccccCC
Q 010883 256 -----------DCIYVYDLEANKLSLRILAHTSD------V---NTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 256 -----------g~i~vwd~~~~~~~~~~~~~~~~------v---~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
+.|..+|..+++.+-.+...... . .-+.....++ ..++.++.+|.+.++|.. +
T Consensus 267 ~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~----t 342 (599)
T 1w6s_A 267 ETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT----D 342 (599)
T ss_dssp GGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT----T
T ss_pred CcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC----C
Confidence 38999999999988776532211 1 1122211345 567788999999999987 5
Q ss_pred CceeEEeccc-------------cccE--------------------------EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 313 GKPAGVLMGH-------------LEGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 313 ~~~~~~~~~~-------------~~~v--------------------------~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
++.+...... ..++ ..++++|+..++++...+-...++..+
T Consensus 343 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (599)
T 1w6s_A 343 GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM 422 (599)
T ss_dssp CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred CCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccc
Confidence 6655443211 0011 245788888888777655433333222
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeE-EEEEE---EeccccCCCCcEEEEEecCCeE
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRC---HFSPVYSTGQKYIYTGSHDSCV 429 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~~~~~l~~g~~dg~i 429 (498)
........... .... +...+.......+....+..+....... ..... .+.......+.+++.++.||.|
T Consensus 423 ~~~~~g~~~~g-----~~~~-~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 423 LPYKAGQFFVG-----ATLN-MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYL 496 (599)
T ss_dssp CCCCTTSCCCC-----EEEE-EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEE
T ss_pred ccccCCcceec-----ccce-eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeE
Confidence 10000000000 0000 0000000000000112222222221100 00000 0111122256778889999999
Q ss_pred EEEECCCCcEEEEeccCCCCe-eeeEEcCCCC-eEEEE
Q 010883 430 YVYDLVSGEQVAALKYHTSPV-RDCSWHPSQP-MLVSS 465 (498)
Q Consensus 430 ~iwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~-~l~s~ 465 (498)
+.||..+|+.+..++...+.+ .-+.+..+|+ ++++.
T Consensus 497 ~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 999999999998887433222 2345666887 44443
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.80 E-value=4.9e-06 Score=76.64 Aligned_cols=253 Identities=8% Similarity=0.067 Sum_probs=144.8
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCcccccc----CCCCceecEEEEEEcC-CCCEEEEE
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA----DDGGYSFGIFSLKFST-DGRELVAG 252 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~i~~~~~s~-~g~~l~~g 252 (498)
...+++|.++++++.++..++.|..|+..++........... ........ ........+..+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY-WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTT-CCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEeccccc-ccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 356788999999888888899999999876554322110000 00000000 0000112478899998 664 6666
Q ss_pred eCCCeEEEEECCCCeeeEEEec-----cCCCeeEEEEeCC-CCCEEEEeeC-----------------CCeEEEEcCccc
Q 010883 253 SSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDE-SGHLIYSGSD-----------------DNLCKVWDRRCL 309 (498)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~l~s~s~-----------------dg~i~vwd~~~~ 309 (498)
...+.|..+|..+++. ..+.. .......+++. + ++++.++-.. ++.|..||..
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-- 173 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-- 173 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT--
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCC--
Confidence 5556688898776543 22221 11346788886 6 7776665432 3678888864
Q ss_pred cCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCC
Q 010883 310 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 388 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (498)
.+. +..+.........++++|+++.|+.+ ...+.|.+|++.......
T Consensus 174 --~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~----------------------------- 221 (322)
T 2fp8_A 174 --TKE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT----------------------------- 221 (322)
T ss_dssp --TTE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-----------------------------
T ss_pred --CCE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-----------------------------
Confidence 232 22222222345678999999866555 556889999987521000
Q ss_pred CceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec----------CCeEEEEECCCCcEEEEeccCC----CCeeeeE
Q 010883 389 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYHT----SPVRDCS 454 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~ 454 (498)
...+....+ . ...+++++|++.++... .+.|..+|. .++.+..+.... ..++.++
T Consensus 222 ~~~~~~~~g------P----~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 222 AEVLVKIPN------P----GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp EEEEEECSS------E----EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEE
T ss_pred cceEEeCCC------C----CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEE
Confidence 011111111 1 11245568876666544 467888886 477777765332 3466777
Q ss_pred EcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 455 WHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 455 ~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+ .++.++++...++.|.++++....
T Consensus 291 ~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 291 E-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp E-ETTEEEEECSSCSEEEEEEC----
T ss_pred E-eCCEEEEeecCCCceEEEeccccc
Confidence 6 466666666678889999886443
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.80 E-value=1.3e-06 Score=75.89 Aligned_cols=181 Identities=15% Similarity=0.137 Sum_probs=123.6
Q ss_pred ceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc
Q 010883 133 RAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 209 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~ 209 (498)
-...+.|+ ++.++.+.+.+| .|+++|+.+++.+........ .......++++.|.... .++.+.++|..+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~----~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR----YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT----CCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc----cceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 34778898 777777777766 899999999987776644322 22222223455555544 58899999999988
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEE
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF 284 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~ 284 (498)
....+.... . ...+++|++.|+....++.|.++|..+.+.+.++.... ..++.+.|
T Consensus 119 ~~~ti~~~~--e-----------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 119 QVRSFNYDG--E-----------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp EEEEEECSS--C-----------------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEECCC--C-----------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 766555421 1 12233567777777667889999999998888776421 34566888
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc------------cccEEEEEEcCCCCEEEEEeC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------LEGITFIDSRGDGRYLISNGK 343 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------------~~~v~~l~~~~~~~~l~s~~~ 343 (498)
. ++.+++..-.++.|.+.|.. +++.+..+... ....+.|+++|+++.|++.+.
T Consensus 180 ~--~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 180 V--DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp E--TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred E--CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 5 56666555578899999998 66666655431 135689999999887777664
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=1.2e-06 Score=76.09 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=118.2
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEeccCCCee--EEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883 237 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAHTSDVN--TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 237 i~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
...+.|+ ++.++.+.+.+| .|+++|+.+++.+.++.-. .... .++.. ++.+.+..-.++.+.+||.. +
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----t 116 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----N 116 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEe--CCEEEEEEeeCCEEEEEECc----c
Confidence 5678888 676666777666 8999999999998887543 3333 35553 34455555568999999998 7
Q ss_pred CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
.+.+.++.....+ ..+ .+|++.|+.+..++.|.++|..+.+. +
T Consensus 117 ~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v----------------------------------~ 159 (262)
T 3nol_A 117 LRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTP----------------------------------V 159 (262)
T ss_dssp CCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSE----------------------------------E
T ss_pred CcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeE----------------------------------E
Confidence 7777777643322 233 35677777666678899999987432 2
Q ss_pred EEEccC---ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC------------CCCeeeeEEcC
Q 010883 393 ATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH------------TSPVRDCSWHP 457 (498)
Q Consensus 393 ~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~l~~sp 457 (498)
..+... .....+....+. +|++.+....++.|.+.|..+++.+..+... ..-.+.++|+|
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~-----~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV-----DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE-----TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred EEEEeccCCccccccceeEEE-----CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 222211 111111112221 6765555556889999999999998887632 13458899999
Q ss_pred CCCeEEEEeC
Q 010883 458 SQPMLVSSSW 467 (498)
Q Consensus 458 ~~~~l~s~~~ 467 (498)
+++.|+.++.
T Consensus 235 ~~~~lfVTGK 244 (262)
T 3nol_A 235 EHHRLFVTGK 244 (262)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEECC
Confidence 9886666654
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.77 E-value=3e-05 Score=77.20 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=115.9
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCcee------EEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT------VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 216 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~------v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 216 (498)
+..+++++.++.|.-+|..+|+.+.+.......... -..+++ .+..+++++.++.|..+|..+|+.......
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 344555556445999999999877665433221100 011111 356677888999999999999988765443
Q ss_pred cccccCccccccCCCCceecEEEEEEcCCCC-EEEEEeC------CCeEEEEECCCCeeeEEEeccCCCe----------
Q 010883 217 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSS------DDCIYVYDLEANKLSLRILAHTSDV---------- 279 (498)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~-~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~v---------- 279 (498)
......... ...++.. .=..+|+ .+++++. ++.|+-+|..+++.+-........+
T Consensus 146 ~~~~~~~~~-------~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~ 217 (582)
T 1flg_A 146 ADHGAGYTM-------TGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTV 217 (582)
T ss_dssp SCGGGTCBC-------CSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEE
T ss_pred CCCCcCccc-------ccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccc
Confidence 321100000 0112210 0011233 5556543 7899999999998876543211000
Q ss_pred -------------------------------eEEEEeCCCCCEEEEeeC--------------------C----CeEEEE
Q 010883 280 -------------------------------NTVCFGDESGHLIYSGSD--------------------D----NLCKVW 304 (498)
Q Consensus 280 -------------------------------~~~~~~~~~~~~l~s~s~--------------------d----g~i~vw 304 (498)
..+++. +...+++.+.. | +.|..+
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d-~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~Al 296 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD-AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGV 296 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE-TTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEE
T ss_pred ccccccccCCCccccccccccccccCCccccCCceEc-CCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEE
Confidence 123454 44566766653 2 589999
Q ss_pred cCccccCCCceeEEecc--cc--------ccEEEEEEc-CCCC---EEEEEeCCCcEEEEeCCCCCCccc
Q 010883 305 DRRCLNVKGKPAGVLMG--HL--------EGITFIDSR-GDGR---YLISNGKDQAIKLWDIRKMSSNAS 360 (498)
Q Consensus 305 d~~~~~~~~~~~~~~~~--~~--------~~v~~l~~~-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~ 360 (498)
|.. +++.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+.+....
T Consensus 297 D~~----TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 361 (582)
T 1flg_A 297 DPS----SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA 361 (582)
T ss_dssp CTT----TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eCC----CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc
Confidence 987 7777766542 21 2222 2222 4674 788899999999999988765433
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.75 E-value=1.8e-05 Score=70.62 Aligned_cols=234 Identities=9% Similarity=-0.012 Sum_probs=132.3
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe
Q 010883 189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK 267 (498)
Q Consensus 189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~~~ 267 (498)
.+|+.+.. +.|+.+++............... .....+..++|++++..|+.+. .++.|..+++....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~ 69 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLH-----------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE 69 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE-----------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeec-----------CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence 45555553 47888888765432110000000 0012578999999766565554 56899999997765
Q ss_pred eeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC---C
Q 010883 268 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---D 344 (498)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---d 344 (498)
....+.........+++.+..+.++++-...+.|.++++. .................++++|++..|+.+.. .
T Consensus 70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC----CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 4333323335678999974445555566667899999985 21111122222245789999997665555443 3
Q ss_pred CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe
Q 010883 345 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 424 (498)
Q Consensus 345 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 424 (498)
+.|..+++.... ...+.... .... ..+++++++..|+.+.
T Consensus 146 ~~I~~~~~dg~~-----------------------------------~~~~~~~~-~~~P----~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 146 PKIETSHMDGTN-----------------------------------RRILAQDN-LGLP----NGLTFDAFSSQLCWVD 185 (267)
T ss_dssp CEEEEEETTSCC-----------------------------------CEEEECTT-CSCE----EEEEEETTTTEEEEEE
T ss_pred cEEEEEecCCCC-----------------------------------cEEEEECC-CCCC----cEEEEcCCCCEEEEEE
Confidence 578888775411 01110000 0111 2235566766665554
Q ss_pred -cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 425 -HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 425 -~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
..+.|.++|+........+.. ......++.. .+.++++....+.|.+++..++.
T Consensus 186 ~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence 468999999876544433332 2334566664 33344444456889999987654
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.75 E-value=2.6e-06 Score=73.96 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCee--EEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883 237 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN--TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 314 (498)
Q Consensus 237 i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 314 (498)
...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -..... .+++ .++.+....-.++.+.+||.. +.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~----Tl~ 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGM----PPQ 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETT----TTE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECC----cCc
Confidence 4667787 4666777778889999999999988877 223333 3555 345666666678999999998 777
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 394 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
.+.++.....+ ..++ +|++.|+.+..++.|.++|..+.+. +..
T Consensus 128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v----------------------------------~~~ 170 (268)
T 3nok_A 128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFAL----------------------------------VGA 170 (268)
T ss_dssp EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCE----------------------------------EEE
T ss_pred EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeE----------------------------------EEE
Confidence 77777643332 3344 4677787777788999999887432 222
Q ss_pred EccC---ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-------------CCCeeeeEEcCC
Q 010883 395 YKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPS 458 (498)
Q Consensus 395 ~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~ 458 (498)
+... .....+....+. +|++.+....+..|.+.|..+++.+..+... ..-.+.++|+|+
T Consensus 171 I~V~~~g~~v~~lNeLe~~-----dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 171 VQVKLRGQPVELINELECA-----NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EECEETTEECCCEEEEEEE-----TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEeCCCCcccccccccEEe-----CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 2211 111111222221 6765555556889999999999998887521 135688999998
Q ss_pred CCeEEEEe
Q 010883 459 QPMLVSSS 466 (498)
Q Consensus 459 ~~~l~s~~ 466 (498)
++.|+..+
T Consensus 246 ~~rlfVTG 253 (268)
T 3nok_A 246 SGRIFMTG 253 (268)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEeC
Confidence 77555554
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.74 E-value=1.8e-05 Score=72.16 Aligned_cols=228 Identities=8% Similarity=-0.020 Sum_probs=133.0
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-- 255 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-- 255 (498)
....++|+|+++++++-..++.|..||..+... ...... ..+..+++.++|+++++....
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~-----------------~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVE-----------------GKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECS-----------------SEEEEEEECTTSCEEEEEECTTS
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEeCC-----------------CCceeEEEcCCCcEEEEeccCCc
Confidence 467899999998666665788999998775422 211110 157889999999965555432
Q ss_pred CeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc-eeEE---------eccccc
Q 010883 256 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV---------LMGHLE 324 (498)
Q Consensus 256 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~---------~~~~~~ 324 (498)
..|..+|..+++...... ........++.. +++..+++-..++.|.++|.. .+. .+.. ......
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVV----QPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETT----TTEEEEEEECGGGSCSSTTCCSC
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCC----CCcEeEEEECCccccccccCCCC
Confidence 247778887777543222 112233455543 444445554468899999875 221 1110 001112
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEE
Q 010883 325 GITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 403 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (498)
....+ +|+++.|+. -...+.|..+++........ .+.+..+.
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~----------------------------~~~~~~~~------- 212 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----------------------------PEIFVEQT------- 212 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC----------------------------CEEEEESC-------
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc----------------------------cEEEeccC-------
Confidence 34555 778876654 44567899999864100000 01111110
Q ss_pred EEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEE--EEeccCCCCeeeeEEc---CCCCeEEEEeCCC
Q 010883 404 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALKYHTSPVRDCSWH---PSQPMLVSSSWDG 469 (498)
Q Consensus 404 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s---p~~~~l~s~~~Dg 469 (498)
....++++++|++.++....+.|.++|.. ++.. ..+.......++++|. |++..|+.++..+
T Consensus 213 ---~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 213 ---NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ---CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ---CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 01223566789877666667899999975 6653 2344334568999998 8887666665543
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.72 E-value=2e-05 Score=71.87 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=118.1
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-C-eEEEEECCCCc
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-IVHIVDVGSGT 209 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~-~i~iwd~~~~~ 209 (498)
.....++|+++|+++++-..++.|..||.... .. ..... ...+..+++.++++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~-~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ-IHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EE-EEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eE-EEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 45678999999997777767899999998764 22 22222 2368899999999966655432 2 46677777776
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEEEe---------ccCCCe
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL---------AHTSDV 279 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~---------~~~~~v 279 (498)
.......... .....++..+++..+++-..++.|+++|..+++. +.... ..-...
T Consensus 107 ~~~~~~~~~~---------------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 107 VETLLTLPDA---------------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EEEEEECTTC---------------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred EEEEEeCCCc---------------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 5433222110 0123344455554444444588999999876532 11111 111234
Q ss_pred eEEEEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 280 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 280 ~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
+.+ + +++. ++++-...+.|..+++.... .......+. .......++++++|+++++....+.|.++|..
T Consensus 172 ngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g-~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 172 NGL--K-RFGNFLYVSNTEKMLLLRIPVDSTD-KPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEE--E-EETTEEEEEETTTTEEEEEEBCTTS-CBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCc--C-cCCCEEEEEeCCCCEEEEEEeCCCC-CCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 555 4 4454 45555567899999986210 000111111 11234568899999888877778889999864
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=9.4e-06 Score=69.83 Aligned_cols=183 Identities=15% Similarity=0.089 Sum_probs=121.8
Q ss_pred CCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEE-EEECCCeEEEEECCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGS 207 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~s~d~~i~iwd~~~ 207 (498)
..-...+.|++ +.++.+.+.+ +.|+++|+.+++.+.........- --.+++ +++.|. ..-.++.+.++|..+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--geGi~~--~~~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--GAGIVA--WRDRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--EEEEEE--ETTEEEEEESSSSEEEEEETTT
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--eeEEEE--eCCEEEEEEeeCCEEEEEECCc
Confidence 34456889986 5666666664 489999999998777654433211 112333 344444 444688999999999
Q ss_pred CceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEE
Q 010883 208 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTV 282 (498)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~ 282 (498)
.+....+.... .-..++ +++..|+.+..++.|.++|..+.+.+.++.-.. ..++.+
T Consensus 95 l~~~~ti~~~~-----------------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 95 LTPRARFRYPG-----------------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp TEEEEEEECSS-----------------CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CcEEEEEeCCC-----------------CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 88766555321 112233 467777777778899999999998888776422 355677
Q ss_pred EEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------------cccEEEEEEcCCCCEEEEEeC
Q 010883 283 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYLISNGK 343 (498)
Q Consensus 283 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~s~~~ 343 (498)
.|. ++.+++..-.+..|.+.|.. +++.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 156 e~~--~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 EWV--NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEE--TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEe--CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 875 56666555567899999998 66666554411 135689999998777766654
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=2.2e-05 Score=78.19 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=97.3
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeecCCC-ceeEE---EEEeC-CCCC-eEEEEE------CCCeEEEEECCCCce
Q 010883 143 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVT---DTSLS-PDQR-HLVYAS------MSPIVHIVDVGSGTM 210 (498)
Q Consensus 143 g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~---~~~~s-p~~~-~l~~~s------~d~~i~iwd~~~~~~ 210 (498)
+..++.++.|+.|..+|..+|+.+.+....... ...+. .+.=. .+++ .+++++ .++.|..+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 567788889999999999999877665432210 00110 01100 1233 455554 378999999999987
Q ss_pred eccccccccc--------------cCcc-cc-----------ccCCCCceecEEEEEEcCCCCEEEEEeC----------
Q 010883 211 ESLANVTEIH--------------DGLD-FS-----------AADDGGYSFGIFSLKFSTDGRELVAGSS---------- 254 (498)
Q Consensus 211 ~~~~~~~~~~--------------~~~~-~~-----------~~~~~~h~~~i~~~~~s~~g~~l~~g~~---------- 254 (498)
.......... .+.. .. .....+.. .-..+++.|+...++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~-~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGA-PWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCC-CCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCcc-ccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 6643321100 0000 00 00000111 1124677777777777663
Q ss_pred ----------C----CeEEEEECCCCeeeEEEec--cCC----CeeEEEEeC---CCC---CEEEEeeCCCeEEEEcCcc
Q 010883 255 ----------D----DCIYVYDLEANKLSLRILA--HTS----DVNTVCFGD---ESG---HLIYSGSDDNLCKVWDRRC 308 (498)
Q Consensus 255 ----------d----g~i~vwd~~~~~~~~~~~~--~~~----~v~~~~~~~---~~~---~~l~s~s~dg~i~vwd~~~ 308 (498)
| +.|..+|..+++.+-.+.. |.. .+....+.. .++ ..++.++.+|.++++|..
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~- 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS- 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT-
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC-
Confidence 2 5899999999998877653 321 111111111 345 378889999999999987
Q ss_pred ccCCCceeEEe
Q 010883 309 LNVKGKPAGVL 319 (498)
Q Consensus 309 ~~~~~~~~~~~ 319 (498)
+++.+...
T Consensus 355 ---tG~~lw~~ 362 (582)
T 1flg_A 355 ---NGKLQNAF 362 (582)
T ss_dssp ---TCCEEEEE
T ss_pred ---CCCEeccc
Confidence 55555443
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.68 E-value=9.5e-06 Score=69.81 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=117.2
Q ss_pred cEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEEeccCCC-eeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC
Q 010883 236 GIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 312 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 312 (498)
-...+.|+. +.++.+.+.+ ..|+.+|+.+++.+.++.-.... -..+++. ++++....-.++.+.+||.. +
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~----t 94 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA----T 94 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC----c
Confidence 366788886 5555555554 48999999999998877533222 2345553 45555566678999999997 7
Q ss_pred CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 313 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
.+.+.++.....+ ..++ +++..|+.+..++.|.++|..+... +
T Consensus 95 l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~----------------------------------~ 137 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQ----------------------------------V 137 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCE----------------------------------E
T ss_pred CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeE----------------------------------E
Confidence 7777777644333 3444 4566666666688999999988432 2
Q ss_pred EEEccC---ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccC-------------CCCeeeeEEc
Q 010883 393 ATYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWH 456 (498)
Q Consensus 393 ~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~s 456 (498)
..+... .....+....+. +|++.+....+..|.+.|..+++.+..+... ..-.+.++|+
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-----~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d 212 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-----NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD 212 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-----TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred EEEEEccCCcccccceeeEEe-----CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence 222211 111111111111 6776655556889999999999998887521 1245889999
Q ss_pred CCCCeEEEEeC
Q 010883 457 PSQPMLVSSSW 467 (498)
Q Consensus 457 p~~~~l~s~~~ 467 (498)
|+++.|...+.
T Consensus 213 ~~~~~lfVTGK 223 (243)
T 3mbr_X 213 AEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEECC
Confidence 98876655553
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.66 E-value=2e-06 Score=88.88 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=113.9
Q ss_pred ceEEEEEc-CCCCEEEEEEC-CC----eEEEEECCCC-eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeE
Q 010883 133 RAYVSQFS-ADGSLFVAGFQ-AS----QIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIV 200 (498)
Q Consensus 133 ~v~~~~~s-~dg~~la~~~~-dg----~i~vw~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i 200 (498)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+.. ........++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----cccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 67889999 99999886543 22 5999999987 52211 111123468899999988887765 268
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe-ee--EEEe-
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANK-LS--LRIL- 273 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~-~~--~~~~- 273 (498)
.++++.++........... .......+.|+|||++|+..+. ...|+++|+.++. .. ..+.
T Consensus 250 ~~~~lgt~~~~~~lv~~~~-------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEH-------------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp EEEETTSCGGGCEEEEECC-------------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred EEEECCCCchhcEEEEecC-------------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 8888877642211110000 0013567899999998887653 3468999998752 12 3332
Q ss_pred ccCCCeeEEEEeCCCCCEEEEeeCC--C--eEEEEcCccccCCCceeEE-eccccc--cEEEEEEcCCCCEEEEEeCCCc
Q 010883 274 AHTSDVNTVCFGDESGHLIYSGSDD--N--LCKVWDRRCLNVKGKPAGV-LMGHLE--GITFIDSRGDGRYLISNGKDQA 346 (498)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~l~s~s~d--g--~i~vwd~~~~~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~l~s~~~dg~ 346 (498)
.......++.|+ .++.+++....+ + .|..+|+. ....... +..+.. .+..+.+. .+.++++...++.
T Consensus 317 ~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~ 390 (751)
T 2xe4_A 317 REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGL 390 (751)
T ss_dssp CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTE
T ss_pred CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCE
Confidence 334555666664 444455554443 3 56666654 1111112 222333 34555554 2344556666775
Q ss_pred --EEEEeC
Q 010883 347 --IKLWDI 352 (498)
Q Consensus 347 --i~iwd~ 352 (498)
|.++|+
T Consensus 391 ~~l~~~dl 398 (751)
T 2xe4_A 391 TRIWTMMA 398 (751)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 555564
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.66 E-value=1.5e-06 Score=75.47 Aligned_cols=179 Identities=11% Similarity=0.019 Sum_probs=121.6
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEE-EECCCeEEEEECCCCcee
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~s~d~~i~iwd~~~~~~~ 211 (498)
-...+.|+ ++.++++.+.+|.|+++|+.+++.+... .. ... --..+++ +++.|.. .-.++.+.+||..+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~-FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNI-FAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTC-CEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCc-ceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 34678887 4667777788899999999999777666 32 211 1122444 3444444 445889999999998877
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC-----CCeeEEEEeC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGD 286 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~ 286 (498)
..+.... .-..++ +|++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|.
T Consensus 130 ~ti~~~~-----------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 130 RTTRYSG-----------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp EEEECSS-----------------CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EEEeCCC-----------------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence 6655321 111223 567888888778999999999999888776322 245778885
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc-------------cccEEEEEEcCCCCEEEEEe
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYLISNG 342 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~s~~ 342 (498)
++.+++..-.+..|.+.|.. +++.+..+... ..-.+.|+++|+++.|++.+
T Consensus 190 -dG~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -CCEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 56666555568899999998 67666655422 13568999999776655554
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=5.5e-05 Score=78.76 Aligned_cols=292 Identities=10% Similarity=0.052 Sum_probs=164.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-------e----cCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI-------L----AKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~-------~----~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
...|.++...++|.+.+ |+..+-|.+++..++....... . ..-....|.++...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45799999998887544 5564568889987753211110 0 011234699999988886 455666667
Q ss_pred EEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEE---eccC
Q 010883 200 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHT 276 (498)
Q Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~---~~~~ 276 (498)
|..++..++............. ...-....|.++...++|. |..|+.++-|..||..++...... ....
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMN-------ESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp EEEECSSCCSCEEEC----CCC-------SSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred EEEeCCCCCcceeeccCccccc-------cCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence 8888877654432211100000 0000123699999988887 667776666999998765432111 1223
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec---cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
..|.++... .++.+ ..|+.++-+..+|.. .++ ...+. .....|.++...+++.+.+ |+. +-|.+||..
T Consensus 407 ~~v~~i~~d-~~g~l-Wigt~~~Gl~~~~~~----~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 407 NSVLCSLKD-SEGNL-WFGTYLGNISYYNTR----LKK-FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLA 477 (781)
T ss_dssp SBEEEEEEC-TTSCE-EEEETTEEEEEECSS----SCE-EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESS
T ss_pred cceEEEEEC-CCCCE-EEEeccCCEEEEcCC----CCc-EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCC
Confidence 568888874 55654 457776778889875 332 22222 1346789998888876544 445 458889877
Q ss_pred CCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-eEEEEEEEeccccCCCCcEEEEEecCCeEEEE
Q 010883 354 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 432 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 432 (498)
+....... ....... ...+. +....++|.+. .|+.++-|..|
T Consensus 478 ~~~~~~~~--------------------------------~~~~~~~~~~~i~----~i~~d~~g~lW-igt~~~Gl~~~ 520 (781)
T 3v9f_A 478 SKKVIHHY--------------------------------DTSNSQLLENFVR----SIAQDSEGRFW-IGTFGGGVGIY 520 (781)
T ss_dssp SSSCCEEE--------------------------------CTTTSSCSCSCEE----EEEECTTCCEE-EEESSSCEEEE
T ss_pred CCeEEecc--------------------------------cCcccccccceeE----EEEEcCCCCEE-EEEcCCCEEEE
Confidence 53211000 0000000 00111 11233466644 45554448889
Q ss_pred ECCCCcEEEEecc---CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 433 DLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 433 d~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
|..+++...-... ....|.++...++|.+.+++ .+|.|..||....
T Consensus 521 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 521 TPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF 569 (781)
T ss_dssp CTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred eCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence 9876654332211 23568899998888866554 4676588886544
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=0.00038 Score=72.42 Aligned_cols=290 Identities=12% Similarity=0.075 Sum_probs=162.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec----CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 206 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~ 206 (498)
...|.++...++|.+.+. +.+ -|.+||..++......... ......|.++...++|.+. .|+..+-|.+++..
T Consensus 210 ~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCC
Confidence 356999999999986664 445 5889998776322111100 0123469999998888754 45554568889987
Q ss_pred CCceecccc--ccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe---------cc
Q 010883 207 SGTMESLAN--VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---------AH 275 (498)
Q Consensus 207 ~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---------~~ 275 (498)
++....... ...... ......-....|.++...++|. |..|+.++-|..++........... ..
T Consensus 287 ~~~~~~~~~~~f~~~~~----~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIRE----GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS 361 (781)
T ss_dssp CC---------CEEECB----CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred CCeeeeeeccccccccC----CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence 765432221 000000 0000011233699999999887 7777767779999987654322110 02
Q ss_pred CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 010883 276 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 351 (498)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 351 (498)
...|.++... .++. |..|+.++-|..||.. .. ....+ ......|.++...+++.+.+ |+.++-|..+|
T Consensus 362 ~~~v~~i~~d-~~g~-lWigt~~~Gl~~~~~~----~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 362 NKVVSSVCDD-GQGK-LWIGTDGGGINVFENG----KR-VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp SSCEEEEEEC-TTSC-EEEEEBSSCEEEEETT----EE-EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred CcceEEEEEc-CCCC-EEEEeCCCcEEEEECC----CC-eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 3468888874 5555 4566766678888874 11 11111 12345789998888887555 66666788888
Q ss_pred CCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccC-ceeEEEEEEEeccccCCCCcEEEEEecCCeEE
Q 010883 352 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 430 (498)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 430 (498)
..+.. +..+... .....+. +....++|. |..|+. +-|.
T Consensus 434 ~~~~~-----------------------------------~~~~~~~~~~~~~v~----~i~~d~~g~-lwigt~-~Gl~ 472 (781)
T 3v9f_A 434 TRLKK-----------------------------------FQIIELEKNELLDVR----VFYEDKNKK-IWIGTH-AGVF 472 (781)
T ss_dssp SSSCE-----------------------------------EEECCSTTTCCCCEE----EEEECTTSE-EEEEET-TEEE
T ss_pred CCCCc-----------------------------------EEEeccCCCCCCeEE----EEEECCCCC-EEEEEC-CceE
Confidence 76521 1111100 0001111 112233555 444555 5599
Q ss_pred EEECCCCcEEEEeccC-----CCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 431 VYDLVSGEQVAALKYH-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 431 iwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.||..+++........ ...|.++...++|.+.+....+| |..|+...
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~ 524 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM 524 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence 9998876543322211 35789999998888655443344 66777654
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=2.7e-05 Score=80.42 Aligned_cols=156 Identities=8% Similarity=0.017 Sum_probs=93.5
Q ss_pred eEEEEEeC-CCCCeEEEEEC-CC----eEEEEECCCC-ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE
Q 010883 178 TVTDTSLS-PDQRHLVYASM-SP----IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 250 (498)
Q Consensus 178 ~v~~~~~s-p~~~~l~~~s~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~ 250 (498)
.+...+|| |||++||.+.. +| .|+++|+.++ +.... .+. .....++|+|||+.|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~-----------------~~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS-----------------GTNGEIVWGPDHTSLF 236 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE-----------------EECSCCEECSSTTEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc-----------------CceeeEEEecCCCEEE
Confidence 68889999 99999987654 22 5999999988 52110 000 0234678999999888
Q ss_pred EEeCC-----CeEEEEECCCCeee--EEEe-ccCCCeeEEEEeCCCCCEEEEeeC---CCeEEEEcCccccCCCce-eEE
Q 010883 251 AGSSD-----DCIYVYDLEANKLS--LRIL-AHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKP-AGV 318 (498)
Q Consensus 251 ~g~~d-----g~i~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~-~~~ 318 (498)
....+ ..|+++++.++... ..+. ........+.|+ +++++|+..+. ...|.++|+... .... +..
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~--~~~~~~~~ 313 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKG--NAHNTLEI 313 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSC--TTCCCEEE
T ss_pred EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCC--CCCceeEE
Confidence 77664 36888999876422 2222 233446678898 77887776553 346888888622 1122 133
Q ss_pred e-ccccccEEEEEEcCCCCEEEEEeCC--C--cEEEEeCCC
Q 010883 319 L-MGHLEGITFIDSRGDGRYLISNGKD--Q--AIKLWDIRK 354 (498)
Q Consensus 319 ~-~~~~~~v~~l~~~~~~~~l~s~~~d--g--~i~iwd~~~ 354 (498)
+ .........+.|+.++.+++....+ + .|..+|+.+
T Consensus 314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3 2334455556655444444444333 2 466666543
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.53 E-value=0.00038 Score=64.61 Aligned_cols=197 Identities=10% Similarity=0.073 Sum_probs=120.6
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 209 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~ 209 (498)
....+|.+..+++ +|+.+ ....|+..++..... .... .... .+..++|.+....|..+. ..+.|..++..++.
T Consensus 33 ~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~-~~~~--~~~~-~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEY-TLLL--NNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCE-EEEE--CSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCcccccccCc-eeEee-cccceEEEeCCCCee-EEee--cCCC-ceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 3445677777744 44444 344688888876532 2222 2222 478999998766666554 56789999988765
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 288 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 288 (498)
........ ......+++.+.+..| ++-...+.|.+.++........+.........+++.|.+
T Consensus 107 ~~~~~~~~----------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~ 170 (349)
T 3v64_C 107 VEEVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 170 (349)
T ss_dssp CEEEECSS----------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred ceEEEeCC----------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence 33221110 0134678888755444 454556789999987654333333344567899998555
Q ss_pred CCEEEEeeCC-CeEEEEcCccccCCCceeEEec-cccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883 289 GHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 354 (498)
Q Consensus 289 ~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~ 354 (498)
+.++++-... +.|..+++. +.....+. ........|+++|++..|+.+ ...+.|..+|+..
T Consensus 171 g~ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 171 GTIYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TEEEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeEEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 6555555555 788888874 33333332 233457899999876666554 4557799998764
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.53 E-value=2.9e-06 Score=86.34 Aligned_cols=244 Identities=9% Similarity=0.035 Sum_probs=134.4
Q ss_pred EEEeCC-CCCeEEEEECCC-----------eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE
Q 010883 181 DTSLSP-DQRHLVYASMSP-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 248 (498)
Q Consensus 181 ~~~~sp-~~~~l~~~s~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~ 248 (498)
.+++.| ++++++.|+.+. .+.+||..+++.......... +.....++++..++++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-------------~~~~~~~~~~~~~g~l 256 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-------------HDMFCPGISMDGNGQI 256 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-------------CCCSSCEEEECTTSCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-------------CCCccccccCCCCCCE
Confidence 456667 888888887543 688999988876544332221 1112345677889999
Q ss_pred EEEEeC-CCeEEEEECCCCeeeEEEeccCCC-eeEEEEeCCCCCEEEEee-CC-----CeEEEEcCccccCCCceeEEe-
Q 010883 249 LVAGSS-DDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGS-DD-----NLCKVWDRRCLNVKGKPAGVL- 319 (498)
Q Consensus 249 l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~s-~d-----g~i~vwd~~~~~~~~~~~~~~- 319 (498)
+++|+. +..+.+||..+++....-..+... -.+++.. +++++++.|+ .+ ..+.+||.. .......-
T Consensus 257 yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~----t~~W~~~~~ 331 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS----SKTWTSLPN 331 (656)
T ss_dssp EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT----TTEEEEETT
T ss_pred EEeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC----CCcceeCCC
Confidence 999884 457999999887654321111111 2334443 5788999988 44 468999986 32221110
Q ss_pred ---ccccccEEEEEEcCCCCEEEEEeCCC---------cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883 320 ---MGHLEGITFIDSRGDGRYLISNGKDQ---------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387 (498)
Q Consensus 320 ---~~~~~~v~~l~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
......-....+..++..++.++.+| .+..||..+...
T Consensus 332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w------------------------------ 381 (656)
T 1k3i_A 332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD------------------------------ 381 (656)
T ss_dssp SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE------------------------------
T ss_pred ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce------------------------------
Confidence 00000000011234555556665554 355666654210
Q ss_pred CCceEEEEccCce-------eEEEEEEEeccccCCCCcEEEEEecCC-----------eEEEEECCCCcEEEEe--ccCC
Q 010883 388 CDQSVATYKGHSV-------LRTLIRCHFSPVYSTGQKYIYTGSHDS-----------CVYVYDLVSGEQVAAL--KYHT 447 (498)
Q Consensus 388 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~l~~g~~dg-----------~i~iwd~~~~~~~~~~--~~h~ 447 (498)
......... ......+.+.. .++++++.|+.++ .|.+||..+..-.... ..+.
T Consensus 382 ----~~~~~~~~~~~~~~~~~~~~~av~~~~---~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~ 454 (656)
T 1k3i_A 382 ----VKSAGKRQSNRGVAPDAMCGNAVMYDA---VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF 454 (656)
T ss_dssp ----EEEEEECEETTEECCCCBTCEEEEEET---TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred ----eecCCccccccccCCCCCCCceEeccC---CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence 000000000 00001111111 2688888887543 6888998777654433 2222
Q ss_pred CCe-eeeEEcCCCCeEEEEeCC-----------CcEEEecCCCC
Q 010883 448 SPV-RDCSWHPSQPMLVSSSWD-----------GDVVRWEFPGN 479 (498)
Q Consensus 448 ~~v-~~l~~sp~~~~l~s~~~D-----------g~i~iw~~~~~ 479 (498)
... .+++..|++++++.|+.+ ..+.+||....
T Consensus 455 ~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 455 ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 333 344667899999999865 45788887554
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=5.4e-05 Score=72.47 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=97.4
Q ss_pred eEEEEEeCC-CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-
Q 010883 178 TVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD- 255 (498)
Q Consensus 178 ~v~~~~~sp-~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d- 255 (498)
....++++| ++..|.++...+.|+.+|..++....+... ......++|+++|++|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----------------~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----------------LSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----------------CSCEEEEEECTTSSEEEEEECCS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----------------CCCcceEEEeCCCCEEEEEeCCC
Confidence 467889998 466666666558899999987765433221 1157899999999966666542
Q ss_pred C----eEEEEECCCCeee--EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-cccccEEE
Q 010883 256 D----CIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF 328 (498)
Q Consensus 256 g----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~ 328 (498)
+ .+.+++.. +... ..+. .......+++.|.++.++++-..++.|..++.. ......... ........
T Consensus 201 ~~~~~~v~~~~~~-g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 201 NNDRPNNYILTRE-SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp CTTSEEEEEEEGG-GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEE
T ss_pred CcccceEEEEeCC-Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCccee
Confidence 1 34444432 3221 2222 234567788874477777777778899999985 332211111 11234678
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 010883 329 IDSRGDGRYLI-SNGKDQAIKLWDIRK 354 (498)
Q Consensus 329 l~~~~~~~~l~-s~~~dg~i~iwd~~~ 354 (498)
++|+|++++|+ +-...+.|..++...
T Consensus 275 ia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99999999554 445667899988653
No 272
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.48 E-value=0.00046 Score=61.33 Aligned_cols=267 Identities=10% Similarity=0.142 Sum_probs=163.2
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCC
Q 010883 152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 231 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (498)
+..|.|-|+.++....+.. -... +.-.+|..+.||.-. ...++|+|+++.+......+.+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp--i~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e------------- 107 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP--ISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 107 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE--CCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCEEEEEECCCCCCccccc--cccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-------------
Confidence 3478899998864432221 1112 234589999888766 6789999999988766665543
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccC----CCeeEEEEeCCCCCEEEEee-------CCC
Q 010883 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGS-------DDN 299 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~s-------~dg 299 (498)
.|.--.|-.+. .|+..+ +..|+-|++... .+...+..|. ..|.....+ ++.++++..+ -.|
T Consensus 108 ----~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 108 ----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 180 (365)
T ss_dssp ----CEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEEE
T ss_pred ----ccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEEC-CCCCEEEEEeEeccCCccce
Confidence 67777887655 455554 457999999753 4445554443 345555554 6666665443 237
Q ss_pred eEEEEcCccccCCCceeEEeccccccEEEEEEcCC---CCEEEEEeC---CCcEEEEeCCCCC-CccccccCcccccccc
Q 010883 300 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK---DQAIKLWDIRKMS-SNASCNLGFRSYEWDY 372 (498)
Q Consensus 300 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 372 (498)
.+.+|.. ..+.-+.+.+|......+.+..+ ...++.+.. .+.+.|-++.... ....+ ....
T Consensus 181 ~mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f-------~kk~ 248 (365)
T 2xzh_A 181 AMQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKA 248 (365)
T ss_dssp EEEEEET-----TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC-------CCEE
T ss_pred eEEEEee-----cccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc-------cccc
Confidence 8899998 45677788888766544444322 123333332 2578898885531 11110 0001
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 452 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 452 (498)
..+.++|+.. ....+.. ..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus 249 vdi~fppea~------------------~DFPVam----qvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 249 VDVFFPPEAQ------------------NDFPVAM----QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEECCCTTCT------------------TCCEEEE----EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ceeeCCcccc------------------CCceEEE----EecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 1111111100 0111112 23345567888889999999999999999888877778877
Q ss_pred eEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 453 CSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 453 l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+-+....-++.....|.|.--.++..
T Consensus 307 ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 307 TAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred ecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 666655556666778888877666654
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=3.7e-05 Score=73.67 Aligned_cols=154 Identities=10% Similarity=0.066 Sum_probs=95.2
Q ss_pred ceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-C----eEEEEECC
Q 010883 133 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P----IVHIVDVG 206 (498)
Q Consensus 133 ~v~~~~~s~-dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-~----~i~iwd~~ 206 (498)
....++++| ++..|.++...+.|+.+|+.++. +..... .......++|++++++|+++... + .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 446789998 45556655555889999998763 222222 22358899999999977666542 1 2333333
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEE
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCF 284 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~ 284 (498)
.+.......+.. ......++++| +|.++++-..++.|+.++...+....... ........++|
T Consensus 213 ~g~~~~~~~l~~---------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 213 ESGFKVITELTK---------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp GGTSCSEEEEEE---------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred CCceeeeeeecc---------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 222211101100 01356788999 67766666677899999998776522222 22245688999
Q ss_pred eCCCCC-EEEEeeCCCeEEEEcCc
Q 010883 285 GDESGH-LIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 285 ~~~~~~-~l~s~s~dg~i~vwd~~ 307 (498)
+ ++++ ++++-...+.|..++..
T Consensus 278 ~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 278 H-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp C-TTSSEEEEEETTTTEEEEEEEE
T ss_pred c-CCCCEEEEEECCCCEEEEEeCC
Confidence 7 7777 55555567889998865
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.45 E-value=0.00092 Score=61.37 Aligned_cols=279 Identities=12% Similarity=0.104 Sum_probs=144.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-CCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCc
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 209 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~ 209 (498)
...+.++.|.+++..+|+| .+|.| +...+.|+........ ......+.++.|.| +..++ ++..+.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 3479999999888888854 66755 3444444322222111 12234688999976 44444 455664443 333343
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EEeccCCCeeEEEEeCCC
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES 288 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~ 288 (498)
.-....... .+...+..+.+.+++..++++ .+|.|+.- ...++.-. ........+..+.+. ++
T Consensus 110 tW~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~-~~ 173 (327)
T 2xbg_A 110 SWSQIPLDP-------------KLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRS-PS 173 (327)
T ss_dssp SCEECCCCT-------------TCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEEC-TT
T ss_pred CceECcccc-------------CCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEc-CC
Confidence 211111100 011246677777777655555 45654332 22233222 223455678899997 56
Q ss_pred CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccc
Q 010883 289 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 368 (498)
Q Consensus 289 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 368 (498)
+.+++.+...+..+-+|-. ......+. ......+..+.+.+++..++ ++.+|.+++.+......
T Consensus 174 ~~~~~~g~~G~~~~S~d~g--G~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t----------- 237 (327)
T 2xbg_A 174 GEYVAVSSRGSFYSTWEPG--QTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN----------- 237 (327)
T ss_dssp SCEEEEETTSSEEEEECTT--CSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE-----------
T ss_pred CcEEEEECCCcEEEEeCCC--CCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe-----------
Confidence 7777666544444444421 01222321 23456788899999887654 45677777664221000
Q ss_pred cccceeecCCcCcccccCCCCceEEEEccC--ceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEec--
Q 010883 369 EWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 444 (498)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 444 (498)
| ...... .....+..+ .+.+++.+++++ .+|.| ++....|+.-..+.
T Consensus 238 -W----------------------~~~~~~~~~~~~~~~~v----~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~ 288 (327)
T 2xbg_A 238 -W----------------------GELLSPLRRNSVGFLDL----AYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV 288 (327)
T ss_dssp -E----------------------CCCBCTTSSCCSCEEEE----EESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG
T ss_pred -e----------------------EeccCCcccCCcceEEE----EecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc
Confidence 0 000000 000011112 234466666655 46766 44455565444443
Q ss_pred -cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecC
Q 010883 445 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 476 (498)
Q Consensus 445 -~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~ 476 (498)
.+...+.++.|.+++ .++.++.+|.|..++-
T Consensus 289 ~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 289 KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 234568889997555 4667778998776653
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.44 E-value=0.00057 Score=64.41 Aligned_cols=195 Identities=10% Similarity=0.069 Sum_probs=117.1
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCcee
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTME 211 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~ 211 (498)
.-.|.+..+++ +|+.+ ....|+..++..+.. .... .... .+..++|.+.+..|..+. ..+.|..++..++...
T Consensus 78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~-~~~~--~~~~-~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEY-TLLL--NNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCC-EEEE--CSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCccccc-eeEee-cCccceeeccCCCcE-EEEe--cCCC-ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 34466666643 44444 345688888876532 2221 2222 578999998666665554 5678999998876533
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 290 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (498)
...... ......+++.+.+..| ++-...+.|.+.++........+.........+++.|.++.
T Consensus 152 ~~~~~~----------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 152 EVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp EEECSS----------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEeCC----------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 222110 0034567888755444 44455678999888755433333334456789999755555
Q ss_pred EEEEeeCC-CeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883 291 LIYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 354 (498)
Q Consensus 291 ~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~ 354 (498)
++++-... +.|..+++. +.....+ .........|+++|++..|+.+ ...+.|..+|+..
T Consensus 216 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 55554445 788888875 2222222 2234457899999876665544 4557788888764
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.001 Score=60.70 Aligned_cols=184 Identities=10% Similarity=0.014 Sum_probs=109.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCC----ceecccccccc
Q 010883 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEI 219 (498)
Q Consensus 145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~----~~~~~~~~~~~ 219 (498)
+|+.+. ...|+..++.+...... . .. ...+..++|++++..|..+. ..+.|..+++.+. ....... .
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~-~--~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~- 74 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSL-I--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R- 74 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEE-E--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--S-
T ss_pred EEEEEC-CCeEEEEECCCcceEeh-h--cC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--C-
Confidence 344443 35689999987643322 1 11 22578999998766665554 4688999998762 1111110 0
Q ss_pred ccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC
Q 010883 220 HDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 298 (498)
Q Consensus 220 ~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d 298 (498)
+ -.....+++.+.+..| ++-...+.|.++++........+.........+++.|.++.++++....
T Consensus 75 --~-----------~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 75 --D-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp --S-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred --C-----------CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence 0 0135678888755545 4445678999999876544333333445678999974455555544333
Q ss_pred -CeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010883 299 -NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 354 (498)
Q Consensus 299 -g~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~ 354 (498)
+.|...++. +.....+ .........+++++++..|+.+. ..+.|..+|+..
T Consensus 142 ~~~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 142 PAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 688888874 3333332 22345678999998776665554 556899999864
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.00059 Score=63.29 Aligned_cols=199 Identities=9% Similarity=-0.038 Sum_probs=117.2
Q ss_pred cEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883 236 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 314 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 314 (498)
.+..++|++.+..|+.. ...+.|+.+++........+.........+++.+.+++++++-...+.|.+.++. ...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----G~~ 149 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAH 149 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SCS
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC----CCc
Confidence 47889999765555544 4678899999987654443333334567888864456666666677899999985 222
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEE-eCC-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceE
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLISN-GKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 392 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
....+.........++++|.+..|+.. ... +.|..+++.....
T Consensus 150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------- 194 (349)
T 3v64_C 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------------------- 194 (349)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----------------------------------
T ss_pred eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----------------------------------
Confidence 222233334567899999866555444 344 6788887764211
Q ss_pred EEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcE
Q 010883 393 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 471 (498)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i 471 (498)
..+-. ...... ..++++|++..|+.+. ..+.|..+|+........+.........+++ ..+.++++-...+.|
T Consensus 195 ~~~~~-~~~~~P----nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V 268 (349)
T 3v64_C 195 RIIAD-THLFWP----NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI 268 (349)
T ss_dssp EESCC-SSCSCE----EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred EEEEE-CCCCCc----ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeE
Confidence 01100 000111 1234555555555554 4678999998654433333333445677888 344455555566778
Q ss_pred EEecCCCC
Q 010883 472 VRWEFPGN 479 (498)
Q Consensus 472 ~iw~~~~~ 479 (498)
...+..++
T Consensus 269 ~~~~~~~G 276 (349)
T 3v64_C 269 NSANKFTG 276 (349)
T ss_dssp EEEETTTC
T ss_pred EEEEccCC
Confidence 77774443
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.39 E-value=0.00018 Score=68.93 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=93.2
Q ss_pred eEEEEEeCCC--CCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC
Q 010883 178 TVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 255 (498)
Q Consensus 178 ~v~~~~~sp~--~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d 255 (498)
....++|+|+ ...|..+...+.|+.++..++........ ......++|+++|+ |+++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~-----------------~~~P~giavd~dG~-lyVad~~ 201 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN-----------------IGQCADVNFTLNGD-MVVVDDQ 201 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC-----------------CSCEEEEEECTTCC-EEEEECC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC-----------------CCCccEEEECCCCC-EEEEcCC
Confidence 4678999995 44455554448899999987776544321 11578999999999 5554432
Q ss_pred C-----eEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-c-cccccEEE
Q 010883 256 D-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M-GHLEGITF 328 (498)
Q Consensus 256 g-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~-~~~~~v~~ 328 (498)
+ .+...+...+...............+++.+.++.++++-..++.|+.+|.. .+.....+ . +....-..
T Consensus 202 ~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~----~g~~~~~~~~~~~~~~~~~ 277 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA----TGTLTEEEVMMDTKGSNFH 277 (433)
T ss_dssp SCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTT----TCCEEEEEEECSCCSSCEE
T ss_pred CCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC----CCeEEEEEeccCCCCCccc
Confidence 1 233343322211111112234557788874377777776678899999985 34331222 1 11222346
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 010883 329 IDSRGDGRYLI-SNGKDQAIKLWDIRK 354 (498)
Q Consensus 329 l~~~~~~~~l~-s~~~dg~i~iwd~~~ 354 (498)
++++|+++.|+ +-...+.|+.+++..
T Consensus 278 ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 278 IVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 99999999555 444567899988753
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.38 E-value=0.00024 Score=66.97 Aligned_cols=227 Identities=10% Similarity=-0.029 Sum_probs=131.2
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCee
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL 268 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~ 268 (498)
+|+.+ ....|+.+++.+.......... ..+..++|.+.+..|+ +-...+.|+.+++.....
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~-----------------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLNNL-----------------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEECSC-----------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred eeEee-cCccceeeccCCCcEEEEecCC-----------------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 44443 3456888888765443222110 1578899997555555 444678899999987654
Q ss_pred eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEe-CC-Cc
Q 010883 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD-QA 346 (498)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d-g~ 346 (498)
...+.........+++.+..+.++++-...+.|.+.++. .......+.........++++|.+..|+... .. +.
T Consensus 151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d----g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT----SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC----CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 443333334557788864456666666677889998875 2222222333345678999998766655444 33 56
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-ec
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SH 425 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~ 425 (498)
|..+++.... ...+... ..... ..++++|++..|+.+ +.
T Consensus 227 I~r~~~dG~~-----------------------------------~~~~~~~-~~~~P----nGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 227 IEASSMDGSG-----------------------------------RRIIADT-HLFWP----NGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEEEETTSCS-----------------------------------CEEEECS-SCSCE----EEEEEEGGGTEEEEEETT
T ss_pred EEEEeCCCCC-----------------------------------cEEEEEC-CCCCe----eeEEEeCCCCEEEEEECC
Confidence 7777765421 1111000 00111 123455455555555 44
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 426 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 426 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+.|..+|+........+.........+++ ..+.++++-...+.|..++..++
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 678999998654443334333445677888 34455666666778888874444
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.37 E-value=0.00031 Score=61.32 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=123.0
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC
Q 010883 236 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 313 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 313 (498)
.+..++|+|++..|+ +...++.|...|.. ++.+.++. .-......|++. .++.++++.-.++.+.++++.... ..
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~-~i 104 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNS-EV 104 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTC-CE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCC-ee
Confidence 699999999766554 57778899999998 77777764 223578889996 667676666677889998875221 00
Q ss_pred ceeEEec------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883 314 KPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387 (498)
Q Consensus 314 ~~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
..+.... ........++|+|+++.|+++.......+|.++........
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l-------------------------- 158 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL-------------------------- 158 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC--------------------------
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce--------------------------
Confidence 1111111 23445689999999987777776655566665421000000
Q ss_pred CCceEEE--EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCC---------CCeeeeEEc
Q 010883 388 CDQSVAT--YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRDCSWH 456 (498)
Q Consensus 388 ~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~s 456 (498)
..+.. +.............+.|. .+++++.......|.++|.. ++.+..+.-.. ..--.++|.
T Consensus 159 --~i~~~~~~~~~~~~~d~S~l~~dp~---tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d 232 (255)
T 3qqz_A 159 --HISKDKALQRQFTLDDVSGAEFNQQ---KNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMD 232 (255)
T ss_dssp --EEEECHHHHHTCCSSCCCEEEEETT---TTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEEC
T ss_pred --eeecchhhccccccCCceeEEEcCC---CCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEEC
Confidence 00000 000000111223334443 56777777778899999965 55665554221 245789999
Q ss_pred CCCCeEEEEeCCCcEEEec
Q 010883 457 PSQPMLVSSSWDGDVVRWE 475 (498)
Q Consensus 457 p~~~~l~s~~~Dg~i~iw~ 475 (498)
++|++.++ +.-+.++++.
T Consensus 233 ~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 233 ASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TTCCEEEE-ETTTEEEEEE
T ss_pred CCCCEEEE-cCCceEEEEE
Confidence 99985555 5666555554
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.33 E-value=0.0017 Score=59.22 Aligned_cols=228 Identities=9% Similarity=-0.002 Sum_probs=127.8
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCC---
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA--- 265 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~--- 265 (498)
+|+.+. ...|+..++.+.+....... -..+..++|++++..|+.. ..++.|..+++..
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~-----------------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~ 64 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECS-----------------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcC-----------------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC
Confidence 344444 35688889887654332211 0157889999866555544 4568999999876
Q ss_pred -CeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883 266 -NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 266 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
......+...-.....+++.+.+++++++-...+.|.++++. .......+.........++++|.+..|+.+...
T Consensus 65 ~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~ 140 (316)
T 1ijq_A 65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 140 (316)
T ss_dssp ---CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC----CCceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence 222222222224567888864455666666678899999985 222222222234567899999866655544432
Q ss_pred --CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 345 --QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 345 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
+.|...++... ....+... ..... ..+++++++..|+.
T Consensus 141 ~~~~I~~~~~dG~-----------------------------------~~~~~~~~-~~~~P----~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 141 TPAKIKKGGLNGV-----------------------------------DIYSLVTE-NIQWP----NGITLDLLSGRLYW 180 (316)
T ss_dssp SSCEEEEEETTSC-----------------------------------CEEEEECS-SCSCE----EEEEEETTTTEEEE
T ss_pred CCCeEEEEcCCCC-----------------------------------CeEEEEEC-CCCCc----eEEEEeccCCEEEE
Confidence 57777776531 11111100 01111 22245556666655
Q ss_pred Ee-cCCeEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 423 GS-HDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 423 g~-~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
+. ..+.|..+|+.......... ........+++. .+.++++-...+.|..++..++.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 54 46789999986433222222 122345678885 35555666567788888865443
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.32 E-value=0.00012 Score=70.10 Aligned_cols=198 Identities=10% Similarity=0.035 Sum_probs=111.7
Q ss_pred ceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC----e-EEEEEC
Q 010883 133 RAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----I-VHIVDV 205 (498)
Q Consensus 133 ~v~~~~~s~d--g~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~----~-i~iwd~ 205 (498)
.-..++|+|+ +..|..+...+.|+.++..++... .... .......++|+++++ |..+...+ . +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-Eeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 4568999995 334444444488999999877432 2221 223588999999999 55444322 1 222222
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEEec--cCCCeeEE
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTV 282 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~ 282 (498)
..+ ........ .-.....++++| +|.++++-..++.|+.+|..++.....+.. ....-..+
T Consensus 215 ~~~-~~~~~~~~---------------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 215 ASG-FTERLSLC---------------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp GGT-TCCEEEEE---------------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred CCC-eecccccc---------------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 111 10000000 001345688999 676555555678899999987765333322 12223469
Q ss_pred EEeCCCCC-EEEEeeCCCeEEEEcCccccCCCceeEEecc---------------ccccEEEEEE---------cCCCCE
Q 010883 283 CFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------------HLEGITFIDS---------RGDGRY 337 (498)
Q Consensus 283 ~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------------~~~~v~~l~~---------~~~~~~ 337 (498)
+|+ ++++ ++++-...+.|+.++.............+.+ .-.....+++ .+++.+
T Consensus 279 a~d-pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l 357 (433)
T 4hw6_A 279 VWH-PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF 357 (433)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEe-CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence 997 6777 4555556788999876411000000111111 1123567888 677777
Q ss_pred EEEEeCCCcEEEEeC
Q 010883 338 LISNGKDQAIKLWDI 352 (498)
Q Consensus 338 l~s~~~dg~i~iwd~ 352 (498)
+++-...+.|+.++.
T Consensus 358 yvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 358 YFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEETTTTEEEEECT
T ss_pred EEEECCCCEEEEECC
Confidence 777667778888874
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.0027 Score=60.05 Aligned_cols=185 Identities=10% Similarity=-0.004 Sum_probs=111.8
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCc----eeccccccc
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT----MESLANVTE 218 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~----~~~~~~~~~ 218 (498)
.+|+.+. ...|+..++........ . .. ...+..++|++.+..|..+. ..+.|+.+++.... ......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~-~--~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--- 155 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSL-I--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--- 155 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEE-E--CS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---
T ss_pred ceeEEec-cceeEEEccCCcceeEe-c--cc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---
Confidence 3455443 46788889886532221 1 12 23688999999766666554 46788888886532 111110
Q ss_pred cccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeC
Q 010883 219 IHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 297 (498)
Q Consensus 219 ~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 297 (498)
........+++.+. ++++++-...+.|.+.++........+.........|++.|..+.++++-..
T Consensus 156 -------------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 156 -------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp -------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred -------------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence 00114678899884 4444455567889999987665444444444567899997445544444323
Q ss_pred -CCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010883 298 -DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 354 (498)
Q Consensus 298 -dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~ 354 (498)
.+.|...++. +.....+ .........|++++++..|+.+. ..+.|..+|+..
T Consensus 223 ~~~~I~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 223 TPAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp SSCCEEEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 3788888874 3322222 23335678999998777666554 456799998864
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.30 E-value=0.0017 Score=60.12 Aligned_cols=267 Identities=10% Similarity=0.157 Sum_probs=164.8
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCC
Q 010883 152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 231 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (498)
+..|.|-|+.++..+.+... . --+.-.+|..+.||.-. ..++.|+|+++........+.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--C----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceeccc--c----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 34788999987644322211 1 12345789998888765 6799999999987766655543
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEeccC----CCeeEEEEeCCCCCEEEEee-------CCC
Q 010883 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT----SDVNTVCFGDESGHLIYSGS-------DDN 299 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~s-------~dg 299 (498)
.|.--.|-.+. .|+..+ +..|+-|++... .++..+..|. ..|.....+ ++.++++..+ -.|
T Consensus 107 ----~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 107 ----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp ----CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEE
T ss_pred ----CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccc
Confidence 45556676444 455554 457999999753 3445554443 345555554 6667666443 247
Q ss_pred eEEEEcCccccCCCceeEEeccccccEEEEEEcCCC---CEEEEEeCC---CcEEEEeCCCCC-CccccccCcccccccc
Q 010883 300 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD---QAIKLWDIRKMS-SNASCNLGFRSYEWDY 372 (498)
Q Consensus 300 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~d---g~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 372 (498)
.+.+|.. ..+.-..+.+|......+....+. ..++.+... +.+.|.++.... ....+ ....
T Consensus 180 ~mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f-------~kk~ 247 (494)
T 1bpo_A 180 AMQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKA 247 (494)
T ss_dssp EEEEEES-----TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC-------CCEE
T ss_pred eEEEeec-----cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc-------ccee
Confidence 8899998 456677888887766555554321 234444432 689999886531 11100 0001
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 452 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 452 (498)
..+.++|+... ...+.. ..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus 248 vdv~fppe~~~------------------DFPvam----qvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 248 VDVFFPPEAQN------------------DFPVAM----QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp EECCCCTTSTT------------------CCEEEE----EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred eeeeCCccccc------------------CceeEE----EecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 11112221100 111112 23445667888889999999999999999888777778877
Q ss_pred eEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 453 CSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 453 l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.+-+....-++.....|.|.--.++..
T Consensus 306 t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 306 TAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ecccCCCCcEEEEccCceEEEEEEccc
Confidence 777666666777778888777666554
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0018 Score=59.07 Aligned_cols=187 Identities=10% Similarity=0.051 Sum_probs=108.7
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCCceeccccccccccCc
Q 010883 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGL 223 (498)
Q Consensus 145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (498)
+|+.+ ....|+..+++.......... .+ ...+..++|.+.+..|..+ ...+.|..++..++..........
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~-~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----- 77 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVV-GG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----- 77 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEE-EE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-----
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEe-cC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-----
Confidence 34444 346799999986521111111 11 1257789999865555544 456789999987653211100000
Q ss_pred cccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCeE
Q 010883 224 DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLC 301 (498)
Q Consensus 224 ~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i 301 (498)
-.....+++.+.+..| ++-...+.|.++++........+.........+++.|..+.++++-. ..+.|
T Consensus 78 ----------l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 78 ----------LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred ----------CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 0135578888744444 45456788999998764433333344456789999744454444432 35788
Q ss_pred EEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883 302 KVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 354 (498)
Q Consensus 302 ~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~ 354 (498)
...++. +.....+ .......+.|++++++..|+.+ ...+.|..+|+..
T Consensus 148 ~r~~~d-----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 148 ERAGMD-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEcC-----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 888874 2222222 2233456899999976666554 4567899998864
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.00028 Score=67.78 Aligned_cols=158 Identities=10% Similarity=0.058 Sum_probs=94.4
Q ss_pred ceEEEEEcCC-C-CEEEEEECCCeEEEEECCCCeEEEEEeec-CCCceeEEEEEe-------CCCCCeEEEEECCC----
Q 010883 133 RAYVSQFSAD-G-SLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSL-------SPDQRHLVYASMSP---- 198 (498)
Q Consensus 133 ~v~~~~~s~d-g-~~la~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~~~~-------sp~~~~l~~~s~d~---- 198 (498)
.-..|+|+|. . +++++....+.|++.|+.++... .+... .........++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999993 4 45555444567999999887433 32222 112235899999 99999777776554
Q ss_pred ---eEEEEECCC-Cceec-c--ccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECC------
Q 010883 199 ---IVHIVDVGS-GTMES-L--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE------ 264 (498)
Q Consensus 199 ---~i~iwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~------ 264 (498)
.|.+++... +.... . ..+... .....++++|+ +.++++-..++.|+.+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~---------------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY---------------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE---------------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCceEEEEecCCCCceeecccceeeccC---------------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 255665433 22210 0 001000 03456788994 5555556677889999997
Q ss_pred -CCee-----------eEEEe--ccCCCeeEEEEeCCCCCE-EEEeeCCCeEEEEcCc
Q 010883 265 -ANKL-----------SLRIL--AHTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRR 307 (498)
Q Consensus 265 -~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~~-l~s~s~dg~i~vwd~~ 307 (498)
++.. ...+. +.......|+|+ ++++. +++-+..+.|+.++..
T Consensus 284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCceeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecC
Confidence 5543 11221 223446789997 77775 4444567788887653
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.13 E-value=0.0063 Score=57.48 Aligned_cols=229 Identities=9% Similarity=-0.004 Sum_probs=130.8
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC--
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN-- 266 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~-- 266 (498)
+|+.+. ...|+..++.......+... ...+..++|++.+..|+.. ...+.|+.+++...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-----------------~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~ 146 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 146 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS-----------------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred eeEEec-cceeEEEccCCcceeEeccc-----------------cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC
Confidence 444443 46788888876654332211 1157899999865555554 45688999998752
Q ss_pred --eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC-
Q 010883 267 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK- 343 (498)
Q Consensus 267 --~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~- 343 (498)
.....+.........+++.+..++++++-...+.|.+.++. .......+.........|++.|.+..|+....
T Consensus 147 ~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~----g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 147 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp -CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT----TCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC----CCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence 22233333445678888864466666666778899999985 22233333333455789999996666554442
Q ss_pred -CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEE
Q 010883 344 -DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 422 (498)
Q Consensus 344 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 422 (498)
.+.|...++..... ....... .... ..+++++++..|+.
T Consensus 223 ~~~~I~~~~~dG~~~----------------------------------~~~~~~~--l~~P----~glavd~~~~~lY~ 262 (400)
T 3p5b_L 223 TPAKIKKGGLNGVDI----------------------------------YSLVTEN--IQWP----NGITLDLLSGRLYW 262 (400)
T ss_dssp SSCCEEEEETTSCSC----------------------------------EEEECSS--CSCE----EEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCcc----------------------------------EEEEECC--CCce----EEEEEEeCCCEEEE
Confidence 36788877764211 0011110 0111 22345556666666
Q ss_pred Ee-cCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 423 GS-HDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 423 g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+. ..+.|..+|+........+.. .-.....+++. .+.++++-...+.|..++..++..
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 54 467899999865443333222 22345577773 334555666678888888555543
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0019 Score=61.99 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=98.7
Q ss_pred eEEEEEeCCC-CCeEEEE-ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE-------cCCCCE
Q 010883 178 TVTDTSLSPD-QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-------STDGRE 248 (498)
Q Consensus 178 ~v~~~~~sp~-~~~l~~~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-------s~~g~~ 248 (498)
....|+|.|. ...|.++ ...+.|++.|..++....+...... .......++| +++|++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-------------~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-------------PTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-------------SCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-------------ccCCCcEEEEeecccccCCCCCE
Confidence 4678999983 4444444 4346799999988776554432110 1125889999 999997
Q ss_pred EEEEeCCC-------eEEEEECCC-Ceee-----EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc-------c
Q 010883 249 LVAGSSDD-------CIYVYDLEA-NKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR-------C 308 (498)
Q Consensus 249 l~~g~~dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------~ 308 (498)
|+++...+ .|.+++... +... ..+.. -.....+++.|.++.++++-..++.|..+|+. .
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t 285 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence 77776554 366776444 2221 22222 23446778875577777788888999999986 1
Q ss_pred ccCC----------CceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCC
Q 010883 309 LNVK----------GKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIR 353 (498)
Q Consensus 309 ~~~~----------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~ 353 (498)
.... .+.+... +.......|+|+|+|++|+.+ .....|+.++..
T Consensus 286 g~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 286 GGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 2110 0011112 223446789999999965444 456778886654
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.12 E-value=0.0099 Score=59.54 Aligned_cols=205 Identities=10% Similarity=-0.011 Sum_probs=118.1
Q ss_pred CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE-ECCCeEEEEECCCC
Q 010883 131 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG 208 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-s~d~~i~iwd~~~~ 208 (498)
-.....++|++.+..|..+. ..+.|..++++....... ....+ -..+..+++.+.+..|..+ ...+.|.+.++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~-v~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-VVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE-EECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE-EEeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 34568999999776666554 467899999875421122 22222 1368899999966655554 45789999998765
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEEeccCCCeeEEEEeC
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 286 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 286 (498)
....+.. .. -.....|++.|.+..|+.... .+.|...++............-...+.|++.+
T Consensus 117 ~~~~l~~-~~---------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~ 180 (619)
T 3s94_A 117 LRKVLFW-QE---------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY 180 (619)
T ss_dssp SCEEEEC-SS---------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred CEEEEEe-CC---------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence 4322221 00 013567899987655655543 46787777765433333323345678999975
Q ss_pred CCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010883 287 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 358 (498)
Q Consensus 287 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 358 (498)
.++.++++-...+.|...|+.. ........+.......|++..+ ..+++-...+.|...|..+....
T Consensus 181 ~~~~LY~aD~~~~~I~~~~~dG----~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 181 EEQKLYWADAKLNFIHKSNLDG----TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp TTTEEEEEETTTCCEEEESSSC----CEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cCCEEEEEeCCCCeEEEecCCC----CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 4555555555677899999852 1111111111222345666655 44455556778999998765543
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.12 E-value=0.0012 Score=59.32 Aligned_cols=211 Identities=13% Similarity=0.147 Sum_probs=124.9
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecC-----CCceeEEEEEe---CCCCCeEEEEE----------
Q 010883 135 YVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSL---SPDQRHLVYAS---------- 195 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~-~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~~~~---sp~~~~l~~~s---------- 195 (498)
-+++|++....|..++ ..++|..|+...+..... .... .....+..+.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 4678988666666665 789999999986533322 2211 11225689999 68888777644
Q ss_pred ---CCCeEEEEECC---CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCee
Q 010883 196 ---MSPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEANKL 268 (498)
Q Consensus 196 ---~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-g~i~vwd~~~~~~ 268 (498)
.+..|..+|+. +++......+.....+.. ... +.-...+..++..++|+..++++.. +.|...+......
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~--~~~-g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE--KKA-GKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH--HHH-SSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc--ccc-cccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 25779999998 776655444332111000 000 0011258899999999999988888 8888887764422
Q ss_pred eEEEe-c-----cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-cc---ccccEEE-EEEcCCCCE
Q 010883 269 SLRIL-A-----HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MG---HLEGITF-IDSRGDGRY 337 (498)
Q Consensus 269 ~~~~~-~-----~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~---~~~~v~~-l~~~~~~~~ 337 (498)
..+. . .....+.|++. +++++|++....|.+..+|+... ....+..- .+ ....... +....+|+.
T Consensus 172 -~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~~p--v~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 172 -STFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVSKP--YAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp -EEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECSSS--SCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred -eeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCCCC--cceeecccccCCcccccCcccccccccCCEE
Confidence 2221 1 12236799998 67777777766999999998721 11011111 01 1122333 333346777
Q ss_pred -EEEEeCCCcEEEEeCC
Q 010883 338 -LISNGKDQAIKLWDIR 353 (498)
Q Consensus 338 -l~s~~~dg~i~iwd~~ 353 (498)
+++....+.+.+.+..
T Consensus 248 llV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEETTEEEEEECSS
T ss_pred EEEEcCCCCEEEEECCC
Confidence 4555556655555543
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.10 E-value=0.0051 Score=56.03 Aligned_cols=225 Identities=8% Similarity=-0.021 Sum_probs=128.7
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeee-EEEec
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLS-LRILA 274 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~~-~~~~~ 274 (498)
...|+.+++.+........... ...+..++|.+.+..| ++-...+.|..+++...... ..+..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~---------------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~ 76 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG---------------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE---------------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecC---------------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence 4678899987754211111111 1146789999854444 45456788999998776422 22222
Q ss_pred cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeC--CCcEEEEeC
Q 010883 275 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDI 352 (498)
Q Consensus 275 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~ 352 (498)
.-.....+++.+..++++++-...+.|.++++. .................+++.|.+..|+.... .+.|...++
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence 334567888864466666666677899999985 22222222234456789999987666655542 467777776
Q ss_pred CCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEE
Q 010883 353 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYV 431 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i 431 (498)
.... ...+-.. ..... ..+++++++..|+.+. ..+.|..
T Consensus 153 dG~~-----------------------------------~~~~~~~-~l~~P----nglavd~~~~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 153 DGSS-----------------------------------RFIIINS-EIYWP----NGLTLDYEEQKLYWADAKLNFIHK 192 (318)
T ss_dssp TSCS-----------------------------------CEEEECS-SCSCE----EEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCC-----------------------------------eEEEEEC-CCCCc----cEEEEeccCCEEEEEECCCCEEEE
Confidence 5411 1111000 00111 2235565566666554 4678999
Q ss_pred EECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 432 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 432 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+|+........+.........+++. .+.++++-...+.|..++..++..
T Consensus 193 ~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 193 SNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 9986543332333334456677775 334555555677888888765543
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.06 E-value=0.0059 Score=62.79 Aligned_cols=197 Identities=10% Similarity=-0.019 Sum_probs=111.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceecc
Q 010883 135 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESL 213 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~ 213 (498)
.|.+..+. .+|+.+ ....|+..++....... +. .. ...+..++|.+....|..+. ..+.|+.+++........
T Consensus 388 ~C~~~~~~-p~Ll~a-n~~~Ir~i~l~~~~~~~-l~--~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFT-NRHEVRKMTLDRSEYTS-LI--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp CCEETTSC-CEEEEE-CBSSEEEECTTSCCCEE-EE--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred eeeecccc-cccccc-cccceeEeeccCCccee-ee--cC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence 34443332 244444 34568888887653222 11 12 22578899998665555544 467888888875321000
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 292 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 292 (498)
.... ... .......|++.+.++.|+. -...+.|.+.++........+.........|++.|..+.++
T Consensus 462 ~~~v-i~~-----------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 462 YDTV-ISR-----------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp CEEE-ECS-----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred eeEE-Eec-----------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEE
Confidence 0000 000 0114567888887755554 45578999999976554333334445688999974445444
Q ss_pred EEeeCC-CeEEEEcCccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 010883 293 YSGSDD-NLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 354 (498)
Q Consensus 293 ~s~s~d-g~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~ 354 (498)
++-... +.|...++. +..... +.........|++++.+..|+.+. ....|...++..
T Consensus 530 wtD~g~~~~I~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 530 WTDWGTPAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEECSSSCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EecCCCCCeEEEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 443333 678888874 333333 333345788999997766666554 456788888765
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.00083 Score=60.37 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=107.9
Q ss_pred eEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEE---cCCCCEEEEEe
Q 010883 178 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF---STDGRELVAGS 253 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~---s~~g~~l~~g~ 253 (498)
-..+++|.+....+..++ ..+.|..|+...+..... ...... . .+.....+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s----~----~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS----S----NGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC----C----SSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc----c----cCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 345688988666666666 689999999976644333 221100 0 0001124688999 68887777544
Q ss_pred -------------CCCeEEEEECC---CCeeeEEEe--cc-----------CCCeeEEEEeCCCCCEEEEeeCC-CeEEE
Q 010883 254 -------------SDDCIYVYDLE---ANKLSLRIL--AH-----------TSDVNTVCFGDESGHLIYSGSDD-NLCKV 303 (498)
Q Consensus 254 -------------~dg~i~vwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~l~s~s~d-g~i~v 303 (498)
.+..|..+|+. +++.+.... .. ......++.- ++++..++++.. +.|..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEE
Confidence 25779999999 777665543 11 1247889985 889999988888 88888
Q ss_pred EcCccccCCCceeEEec------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 304 WDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 304 wd~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.+.. ++.+..+. ......+.|+++|+++.|++....+.|..+|+..
T Consensus 164 V~pd-----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 164 VSAD-----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECTT-----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeCC-----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 8764 33232221 1122367899999999988887799999999874
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.89 E-value=0.0001 Score=75.12 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=100.3
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCC----ceeccccccccccCcccc
Q 010883 152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFS 226 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~ 226 (498)
.+.|++.++.+...... ... ...+..++|.+.+..|..+. ..+.|+.+++.+. ........
T Consensus 385 ~~~I~~id~~~~~~~~~---~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---------- 450 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL---IPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------- 450 (699)
T ss_dssp TTC-CEECTTSCCEECC---SCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS----------
T ss_pred ccceEEEeCCCCcceee---ecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC----------
Confidence 45788888876533221 111 12466889998777666654 3568888888751 11111100
Q ss_pred ccCCCCceecEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCC-CeEEEE
Q 010883 227 AADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVW 304 (498)
Q Consensus 227 ~~~~~~h~~~i~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~vw 304 (498)
.-.....|++.+.+ +++++-...+.|.++++........+.........|++.|..+.++++-... +.|.++
T Consensus 451 ------~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 451 ------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp ------CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred ------CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 00124457787544 4444444567899999876544333322334567888874455555444333 678887
Q ss_pred cCccccCCCceeEEe-ccccccEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 010883 305 DRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRK 354 (498)
Q Consensus 305 d~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~ 354 (498)
++. +.....+ .......+.|+|+|++..| ++-...+.|..+++..
T Consensus 525 ~~d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 525 GLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CSS-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eCC-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 774 2222222 2223446689999875544 4555567899998864
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.85 E-value=0.0068 Score=55.00 Aligned_cols=193 Identities=14% Similarity=0.234 Sum_probs=114.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCC----CCe--EEEE-EC---CCeEEEEECC--CCc
Q 010883 142 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRH--LVYA-SM---SPIVHIVDVG--SGT 209 (498)
Q Consensus 142 dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~--l~~~-s~---d~~i~iwd~~--~~~ 209 (498)
...+++.....+-+.|||+ +|+.++.+.. +.++.+..-|+ |+. |+.+ .. +++|.+|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4466666677888999999 6766665421 24566665552 322 3333 33 5789999774 443
Q ss_pred eecccccc-ccccCccccccCCCCceecEEEEEE--cCC-CC-EEEEEeCCCeEEEEECC-------CCeeeEEEeccCC
Q 010883 210 MESLANVT-EIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE-------ANKLSLRILAHTS 277 (498)
Q Consensus 210 ~~~~~~~~-~~~~~~~~~~~~~~~h~~~i~~~~~--s~~-g~-~l~~g~~dg~i~vwd~~-------~~~~~~~~~~~~~ 277 (498)
........ ..... ...+..+++ +|. ++ ++++...+|.+..|++. +.+.++++. ..+
T Consensus 113 l~~i~~~~~pv~t~-----------~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgs 180 (355)
T 3amr_A 113 LQSMTDPDHPIATA-----------INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNS 180 (355)
T ss_dssp EEECSCTTSCEECC-----------CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSS
T ss_pred eeeccccccCcCCC-----------CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCC
Confidence 22221110 00000 014555666 664 44 67778888999999883 234555654 345
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc-CCCceeEEec-cc-cccEEEEEE--cCCCC-EEEEEe-CCCcEEEE
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-VKGKPAGVLM-GH-LEGITFIDS--RGDGR-YLISNG-KDQAIKLW 350 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~-~~-~~~v~~l~~--~~~~~-~l~s~~-~dg~i~iw 350 (498)
.+..+... +....|+.+-.+.-|..++.+... ...+.+..+. ++ ...+..|++ .++++ +|++++ .+....+|
T Consensus 181 q~EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 181 QTEGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp CEEEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CcceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence 77777775 677788899998777666654221 1223443332 22 236788887 45555 566555 56789999
Q ss_pred eCC
Q 010883 351 DIR 353 (498)
Q Consensus 351 d~~ 353 (498)
|..
T Consensus 260 dr~ 262 (355)
T 3amr_A 260 DRQ 262 (355)
T ss_dssp ESS
T ss_pred ECC
Confidence 986
No 296
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.81 E-value=0.059 Score=57.96 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=102.7
Q ss_pred CCCceEEEEEcCC------CCEEEEEEC-CCeEEEEECCCCeEEEEEeecC-CCceeEEEEEeCCCCCeEEEEECCCeEE
Q 010883 130 TTSRAYVSQFSAD------GSLFVAGFQ-ASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH 201 (498)
Q Consensus 130 h~~~v~~~~~s~d------g~~la~~~~-dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~s~d~~i~ 201 (498)
....|.|+++.|. ++++|.|.. |++|+|+++.+-+.+....... .....|.-+.+ ....+|..|-.||.+.
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALF 630 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEE
Confidence 3568999999874 369999996 9999999998765554332211 11223333334 2346788899999876
Q ss_pred EEECC--CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCe
Q 010883 202 IVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 279 (498)
Q Consensus 202 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v 279 (498)
-+.++ ++.........- | +.++.=..+...|..-+.+..+....++.-+ ++.... .-....+
T Consensus 631 ~~~~d~~tg~l~d~r~~~L-------------G-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v 694 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTL-------------G-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV 694 (1158)
T ss_dssp EEEECTTTCCEEEEEEEEC-------------C-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred EEEEcCCCCccccceeEEc-------------C-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence 66554 343322111000 0 1134333444444433333334444444433 332221 1122234
Q ss_pred eEE-EEeCCC-CCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883 280 NTV-CFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 280 ~~~-~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
.++ .|+... .+-++..+ ++.++|..+... ..-.+..+. -...+..++++|+.+.++.+..+
T Consensus 695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTVP-LYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp CEEEEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred ceEeccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEe
Confidence 333 454222 33454443 456888887532 222333332 34678899999988877766543
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.79 E-value=0.017 Score=53.44 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 254 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~ 254 (498)
....++|.|+|+++ ++...+.|.+++ +++........... ........++|+|+ +..|.++..
T Consensus 32 ~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~-----------~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYH-----------RGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEee-----------cCCCCceeEEECCCCCCCCEEEEEEe
Confidence 46789999999855 456679999998 44432221111000 01125789999998 555555443
Q ss_pred -C-----CeEEEEECCCCee-----eE-EEec---cCCCeeEEEEeCCCCCEEEEee
Q 010883 255 -D-----DCIYVYDLEANKL-----SL-RILA---HTSDVNTVCFGDESGHLIYSGS 296 (498)
Q Consensus 255 -d-----g~i~vwd~~~~~~-----~~-~~~~---~~~~v~~~~~~~~~~~~l~s~s 296 (498)
. +.|..++...+.. +. .+.. .......++|. +++.+.++.+
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 153 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG 153 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence 2 6788888775421 11 1221 11134689997 6777666643
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.79 E-value=0.018 Score=59.16 Aligned_cols=198 Identities=9% Similarity=0.000 Sum_probs=109.2
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCcccc
Q 010883 236 GIFSLKFSTDGREL-VAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 310 (498)
Q Consensus 236 ~i~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 310 (498)
.+..++|.+....| ++-...+.|+.+++... .....+.........|++....++++++-...+.|.+.++.
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--- 501 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--- 501 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC---
Confidence 57789999855444 44455678999998753 22233333445667888864455666666778899999985
Q ss_pred CCCceeEEe-ccccccEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883 311 VKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387 (498)
Q Consensus 311 ~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
+.....+ .........|++.|.+..|+.... . +.|.+.++...
T Consensus 502 --G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-------------------------------- 547 (791)
T 3m0c_C 502 --GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------------------------- 547 (791)
T ss_dssp --SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--------------------------------
T ss_pred --CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--------------------------------
Confidence 3333333 234456889999997665555442 2 56777777642
Q ss_pred CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCCCcEEEEecc--CCCCeeeeEEcCCCCeEEE
Q 010883 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVS 464 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s 464 (498)
....+.... ...... +++++.+..|+.+. ..+.|..+++........+.. .-....+|++.. +.++++
T Consensus 548 ---~~~~lv~~~-l~~P~G----LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwt 618 (791)
T 3m0c_C 548 ---DIYSLVTEN-IQWPNG----ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWT 618 (791)
T ss_dssp ---CEEEEECSS-CSCEEE----EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred ---ceEEEEeCC-CCCceE----EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEE
Confidence 111111100 011112 23443455555554 457899999865544333332 122345666632 234444
Q ss_pred EeCCCcEEEecCCCC
Q 010883 465 SSWDGDVVRWEFPGN 479 (498)
Q Consensus 465 ~~~Dg~i~iw~~~~~ 479 (498)
-...+.|...+..++
T Consensus 619 D~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 619 DIINEAIFSANRLTG 633 (791)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred ECCCCEEEEEeCCCC
Confidence 445567777765444
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.78 E-value=0.0078 Score=54.32 Aligned_cols=188 Identities=17% Similarity=0.135 Sum_probs=96.5
Q ss_pred CCCEEEEEE-CC-----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCc-
Q 010883 142 DGSLFVAGF-QA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT- 209 (498)
Q Consensus 142 dg~~la~~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~- 209 (498)
++.+++.|+ .+ ..+.+||..++. .............-..+. .++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE-WSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe-EEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666666 32 368899998763 222211111111122222 256777777754 468999998876
Q ss_pred --eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEec-cCCCeeE
Q 010883 210 --MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILA-HTSDVNT 281 (498)
Q Consensus 210 --~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~-~~~~v~~ 281 (498)
.......+... ..| ..+.+ +++.++.|+.+ ..+.+||+.+.+....-.. ....-.+
T Consensus 91 ~~W~~~~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 154 (301)
T 2vpj_A 91 GVWYSVAPMNVRR----------GLA----GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAG 154 (301)
T ss_dssp CCCEEECCCSSCC----------BSC----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE
T ss_pred CeeEECCCCCCCc----------cce----eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccce
Confidence 44433222111 111 12222 57777777643 3689999988765432211 1111122
Q ss_pred EEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEe
Q 010883 282 VCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWD 351 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd 351 (498)
++. .++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||
T Consensus 155 ~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 155 LVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp EEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred EEE--ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEe
Confidence 333 256677777754 45888887521 11111111111111222223 56677777764 3588888
Q ss_pred CCC
Q 010883 352 IRK 354 (498)
Q Consensus 352 ~~~ 354 (498)
+.+
T Consensus 229 ~~~ 231 (301)
T 2vpj_A 229 IRT 231 (301)
T ss_dssp TTT
T ss_pred CCC
Confidence 876
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.73 E-value=0.0025 Score=57.58 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=75.0
Q ss_pred CCCeEEEEE-CC-----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----
Q 010883 187 DQRHLVYAS-MS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 255 (498)
Q Consensus 187 ~~~~l~~~s-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----- 255 (498)
++.+++.|+ .+ ..+.+||..+.+.......+... .+| ..+. .++..++.|+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~--~~~~l~v~GG~~~~~~~ 77 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR----------RYV----ASVS--LHDRIYVIGGYDGRSRL 77 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC----------BSC----EEEE--ETTEEEEECCBCSSCBC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh----------ccc----cEEE--ECCEEEEEcCCCCCccC
Confidence 445566665 22 36889999887765544322111 012 1122 256777777754
Q ss_pred CeEEEEECCCCe---eeEEEe-ccCCCeeEEEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccE
Q 010883 256 DCIYVYDLEANK---LSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGI 326 (498)
Q Consensus 256 g~i~vwd~~~~~---~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v 326 (498)
..+.+||+.+.+ ....-. .....-.+++. .++.+++.|+.+ ..+.+||+... ....+..+.......
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~ 153 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGA 153 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSC
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccc
Confidence 469999998876 322211 11111122333 246677777654 35888887521 112222222211222
Q ss_pred EEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883 327 TFIDSRGDGRYLISNGKD-----QAIKLWDIRK 354 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~ 354 (498)
..+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 154 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 154 GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 22222 56777777654 3477788765
No 301
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.72 E-value=0.01 Score=53.54 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=95.8
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC-----CeEEEEECCCCceec
Q 010883 142 DGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMES 212 (498)
Q Consensus 142 dg~~la~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d-----~~i~iwd~~~~~~~~ 212 (498)
++.+++.|+.+ ..+.+||..++. .............-..+.+ ++++++.|+.+ ..+.+||..+.+...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 34566666643 358899988763 2222111111111112222 67777777754 358899998877655
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEEe-ccCCCeeEEEEeC
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRIL-AHTSDVNTVCFGD 286 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg-----~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~ 286 (498)
....+... ..|. .+.+ +++.++.|+.++ .+.+||+.+.+....-. .....-.+++.
T Consensus 92 ~~~~p~~r----------~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 153 (302)
T 2xn4_A 92 VANMRDRR----------STLG----AAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-- 153 (302)
T ss_dssp ECCCSSCC----------BSCE----EEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred CCCCCccc----------cceE----EEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--
Confidence 44332211 1121 1222 577777777553 58889998876533211 11111122333
Q ss_pred CCCCEEEEeeCC-------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCC
Q 010883 287 ESGHLIYSGSDD-------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRK 354 (498)
Q Consensus 287 ~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~ 354 (498)
.++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 154 VGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp ETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred ECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 245677777643 35788887521 11111111111112222222 567777777643 578888765
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.71 E-value=0.0075 Score=55.87 Aligned_cols=207 Identities=15% Similarity=0.077 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe---ecCCCceeEEEEEeCCC---CCeEEEEEC-C-----CeE
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI---LAKSLRWTVTDTSLSPD---QRHLVYASM-S-----PIV 200 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~---~~~l~~~s~-d-----~~i 200 (498)
.-..++|.|||+++++ ..+|.|++++ ++.. .... ...........++|+|+ +..|.++.. . +.|
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4578999999996655 5679999998 4432 1111 11112346889999998 554544432 2 578
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC-
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN- 266 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-------------dg~i~vwd~~~~- 266 (498)
..++...+.......+. .. +.......|. ...++|.|||.+.++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~---~~--~p~~~~~~h~--~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVL---DG--IPARPHGLHS--GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEECSSCEEEEEEEE---EE--ECCCTTCCCC--CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred EEEEeCCCCcCceEEEE---Ee--CCCCCCCCcC--CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 88887654221100000 00 0000011232 357999999976555432 256666665430
Q ss_pred ------------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCe--------EEEEcCccc--------c--C--CCc
Q 010883 267 ------------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--------CKVWDRRCL--------N--V--KGK 314 (498)
Q Consensus 267 ------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~--------i~vwd~~~~--------~--~--~~~ 314 (498)
....-..++. ....++|.|.+++++++-..... |.+...-.. . . ...
T Consensus 181 p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 1111111332 35678897446766655443333 433321100 0 0 012
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
++..+.. ......++| .+|.++++.-..+.|...++.
T Consensus 260 p~~~~~~-~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~ 296 (352)
T 2ism_A 260 PLYFWPQ-GFPPGNLAF-FRGDLYVAGLRGQALLRLVLE 296 (352)
T ss_dssp CSEECTT-CCCEEEEEE-ETTEEEEEETTTTEEEEEEEE
T ss_pred CeEecCC-CCCCcceEE-ECCEEEEEECCCCEEEEEEEC
Confidence 3333322 234556776 356655555555666666654
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.70 E-value=0.054 Score=54.32 Aligned_cols=227 Identities=7% Similarity=0.006 Sum_probs=130.8
Q ss_pred eEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCee
Q 010883 190 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKL 268 (498)
Q Consensus 190 ~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~ 268 (498)
+|+.+ ....|+..++.+........+... ..+..++|++.+..|+.+ ..++.|+.+++.....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~---------------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~ 71 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGV---------------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSC---------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCC---------------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc
Confidence 45544 457899999986543222221111 157889999866555544 4578899999876544
Q ss_pred eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE-eccccccEEEEEEcCCCCEEEEEeC--CC
Q 010883 269 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGK--DQ 345 (498)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~--dg 345 (498)
...+.........+++....++++++-...+.|.+.++. +..... ..........|++.|....|+.... .+
T Consensus 72 ~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP 146 (628)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence 333333334567888864456666666667899999985 222222 2234456789999986555554442 45
Q ss_pred cEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEe-
Q 010883 346 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS- 424 (498)
Q Consensus 346 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~- 424 (498)
.|...++..... ..+ ... ..... .+++++++..|+.+.
T Consensus 147 ~I~r~~~dG~~~--------------------------------~~l--~~~---~~~P~----GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 147 KIDRAAMDGSER--------------------------------TTL--VPN---VGRAN----GLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EEEEEETTSCSC--------------------------------EEE--ECS---CSSEE----EEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCce--------------------------------EEE--ECC---CCCcc----eEEEccccCEEEEEEC
Confidence 677777654210 011 111 11111 224455556666554
Q ss_pred cCCeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 425 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 425 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
..+.|..+|+..... ..+.........+++.. +.++++-...+.|...|..++.
T Consensus 186 ~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 467899999865443 23333334456777764 3444444457788888865554
No 304
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.68 E-value=0.011 Score=54.10 Aligned_cols=192 Identities=12% Similarity=0.048 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~ 211 (498)
..++.+.+.+++..++++ .+|.|.. ..+.|....... ......+..+.+.|++.+++++...+..+-+|-......
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence 457888888888777665 4554322 223343333322 233446889999999888776644433333332111111
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-c---cCCCeeEEEEeCC
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-A---HTSDVNTVCFGDE 287 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-~---~~~~v~~~~~~~~ 287 (498)
.. .. .....+..+.+.++++.+ .++.+|.+++.+...++.-..+. . +...+.++.+. +
T Consensus 198 ~~-~~---------------~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~-~ 259 (327)
T 2xbg_A 198 PH-NR---------------TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR-T 259 (327)
T ss_dssp EE-EC---------------CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES-S
T ss_pred EC-CC---------------CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec-C
Confidence 11 10 112267889999998755 55567888776533333322222 1 22357888886 5
Q ss_pred CCCEEEEeeCCCeEEEEcCccccCCCceeEEec---cccccEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 010883 288 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 352 (498)
Q Consensus 288 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 352 (498)
++.+++++ .+|.|. +... .+..-..+. .....+..+.|.+++ .+++++.+|.|.-++-
T Consensus 260 ~~~~~~~g-~~g~i~-~S~D----gG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 260 PNEVWLAG-GAGALL-CSQD----GGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp SSCEEEEE-STTCEE-EESS----TTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCEEEEEe-CCCeEE-EeCC----CCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 56666555 467663 3332 222222222 123567788887554 4666778888777664
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.67 E-value=0.06 Score=53.95 Aligned_cols=186 Identities=9% Similarity=0.050 Sum_probs=113.6
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE-CCCeEEEEECCCCceeccccccccccCc
Q 010883 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGL 223 (498)
Q Consensus 145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (498)
+|+.+ ....|+..++++..... .....+ -..+..++|.+.+..|..+. .++.|..+++............
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g------ 78 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG------ 78 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC------
Confidence 45444 45689999998653222 222222 23578999999776666554 4688999988765432222110
Q ss_pred cccccCCCCceecEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeE
Q 010883 224 DFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLC 301 (498)
Q Consensus 224 ~~~~~~~~~h~~~i~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i 301 (498)
...+..+++.+.+..|+. -...+.|.+.++........+...-.....|++.|..+.++++- +..+.|
T Consensus 79 ----------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 79 ----------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp ----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred ----------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 013567888876555544 44567899999876543222323445678999975455544443 225678
Q ss_pred EEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883 302 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 354 (498)
Q Consensus 302 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~ 354 (498)
...++. +.....+.........|++++++..|+.+ ...+.|..+|+..
T Consensus 149 ~r~~~d-----G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 149 DRAAMD-----GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEETT-----SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCC-----CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 777774 33333333345667899999976666555 4567788888865
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.65 E-value=0.0065 Score=54.87 Aligned_cols=230 Identities=12% Similarity=0.076 Sum_probs=110.3
Q ss_pred CCeEEEEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeE
Q 010883 188 QRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCI 258 (498)
Q Consensus 188 ~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i 258 (498)
+.+++.|+.+ ..+.++|..+.+.......+... .+|. .+.+ ++..++.|+.+ ..+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~----~~~~--~~~lyv~GG~~~~~~~~~~ 79 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR----------CRAG----MVYM--AGLVFAVGGFNGSLRVRTV 79 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC----------BSCE----EEEE--TTEEEEESCBCSSSBCCCE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc----------ccce----EEEE--CCEEEEEeCcCCCccccce
Confidence 3455555543 35888998887654443222111 1121 1222 66777777754 358
Q ss_pred EEEECCCCeeeEEEec-cCCCeeEEEEeCCCCCEEEEeeCCC-----eEEEEcCccccCCCceeEEeccccccEEEEEEc
Q 010883 259 YVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 332 (498)
Q Consensus 259 ~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 332 (498)
.+||..+.+....-.. ....-.+++. .++.+++.|+.++ .+.+||+... ....+..+.........+.+
T Consensus 80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~- 154 (302)
T 2xn4_A 80 DSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVV- 154 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE-
T ss_pred EEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEE-
Confidence 8999988765332111 1111122333 2466777777553 4777887521 11111111111111122222
Q ss_pred CCCCEEEEEeCC-------CcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEE
Q 010883 333 GDGRYLISNGKD-------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 405 (498)
Q Consensus 333 ~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (498)
+++.++.|+.+ ..+.+||+.+..-.. +..+.... ...
T Consensus 155 -~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--------------------------------~~~~p~~r---~~~ 198 (302)
T 2xn4_A 155 -GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY--------------------------------IAEMSTRR---SGA 198 (302)
T ss_dssp -TTEEEEECCEETTTTEECCCEEEEETTTTEEEE--------------------------------ECCCSSCC---BSC
T ss_pred -CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE--------------------------------CCCCcccc---ccc
Confidence 56666666543 347778876532100 00000000 000
Q ss_pred EEEeccccCCCCcEEEEEecC-----CeEEEEECCCCcEEEEeccCCCCeeeeEEcCCCCeEEEEeCCC-----cEEEec
Q 010883 406 RCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWE 475 (498)
Q Consensus 406 ~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg-----~i~iw~ 475 (498)
.+. .-++++++.|+.+ ..+.+||+.+.+-...-..........+..-++++++.|+.++ .|.+||
T Consensus 199 ~~~-----~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 199 GVG-----VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp EEE-----EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred cEE-----EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEc
Confidence 000 0156777777664 4699999987654322111111111112223677788887654 478888
Q ss_pred CCCC
Q 010883 476 FPGN 479 (498)
Q Consensus 476 ~~~~ 479 (498)
+...
T Consensus 274 ~~~~ 277 (302)
T 2xn4_A 274 PTTD 277 (302)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7654
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.64 E-value=0.024 Score=51.42 Aligned_cols=204 Identities=12% Similarity=0.195 Sum_probs=116.4
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC----CCCE--E-EEEeC---CC
Q 010883 187 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRE--L-VAGSS---DD 256 (498)
Q Consensus 187 ~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~----~g~~--l-~~g~~---dg 256 (498)
...+++.....+-+.+||+ +|+........ .++.+..-| .|+. + ++... ++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g------------------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n 99 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG------------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKN 99 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCS------------------CEEEEEEEEEEEETTEEEEEEEEEECSTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCC------------------CcccEEEecccccCCceEeEEEEeCCCCCCC
Confidence 3455666677789999999 55554443211 234444433 2322 3 33333 57
Q ss_pred eEEEEECC--CCeeeEEEec------cC-CCeeEEEE--eCCCCC-EEEEeeCCCeEEEEcCccc---cCCCceeEEecc
Q 010883 257 CIYVYDLE--ANKLSLRILA------HT-SDVNTVCF--GDESGH-LIYSGSDDNLCKVWDRRCL---NVKGKPAGVLMG 321 (498)
Q Consensus 257 ~i~vwd~~--~~~~~~~~~~------~~-~~v~~~~~--~~~~~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~ 321 (498)
+|.+|++. +++ +..+.. .. ..+..+|+ ++..+. ++++...+|.+..|++... ....+.++.+..
T Consensus 100 ~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 100 TIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp EEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred eEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence 89999773 333 333311 11 45666776 544454 6888888999999998421 123455566553
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCce-
Q 010883 322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV- 400 (498)
Q Consensus 322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 400 (498)
.+.+..+...+....|+.+-.+..|..++.+...... ...+..+.....
T Consensus 179 -gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~-----------------------------~~~v~~~~~g~l~ 228 (355)
T 3amr_A 179 -NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSN-----------------------------GTVIDRADGRHLT 228 (355)
T ss_dssp -SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSC-----------------------------CEEEEEBSSSSBC
T ss_pred -CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCC-----------------------------ceEEEEecCCccc
Confidence 3578889999988899999998666556644211000 122333321111
Q ss_pred -eEEEEEEEeccccCCCCc-EEEEEe-cCCeEEEEECC-CCcEEEEec
Q 010883 401 -LRTLIRCHFSPVYSTGQK-YIYTGS-HDSCVYVYDLV-SGEQVAALK 444 (498)
Q Consensus 401 -~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iwd~~-~~~~~~~~~ 444 (498)
...-+..... ++++ ||++++ .+++..+||.. +.+.+..+.
T Consensus 229 aDvEGLai~~~----~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 229 RDIEGLTIYYA----ADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp SCEEEEEEEEC----GGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCcceEEEEec----CCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 1111112112 2444 666666 47799999997 677777774
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.64 E-value=0.059 Score=58.01 Aligned_cols=184 Identities=10% Similarity=0.097 Sum_probs=100.9
Q ss_pred CCEEEEEe----------CCCeEEEEECCCCeeeEEE-eccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCc
Q 010883 246 GRELVAGS----------SDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 314 (498)
Q Consensus 246 g~~l~~g~----------~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 314 (498)
..+|++|+ ..|.|++|++..++..... ....++|++++-. ++. |++|- ...|++|++. ..+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~-Lla~i-g~~l~vy~l~----~~~ 915 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGK-LLASI-NSTVRLYEWT----TEK 915 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTE-EEEEE-TTEEEEEEEC----TTS
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCE-EEEEc-CCEEEEEECC----CCc
Confidence 46888886 3578999998755433222 2456889998854 354 44443 4789999986 333
Q ss_pred eeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEE
Q 010883 315 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 394 (498)
Q Consensus 315 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
.+..-..+-..|..+.....+++++.|..-..|.++..+... ..+..
T Consensus 916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---------------------------------~~L~~ 962 (1158)
T 3ei3_A 916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---------------------------------GNFEE 962 (1158)
T ss_dssp CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---------------------------------TEEEE
T ss_pred eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---------------------------------CeEEE
Confidence 222111111112222222246788888877777776544311 23333
Q ss_pred EccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCC--------cEEEEeccC-CCCeeeeE---EcCCC---
Q 010883 395 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--------EQVAALKYH-TSPVRDCS---WHPSQ--- 459 (498)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h-~~~v~~l~---~sp~~--- 459 (498)
+..+.....+..+.+- +...++.+..+|.|.++..... ++...-.-| ...|+++. +.+.+
T Consensus 963 ~a~D~~~~~vta~~~l-----d~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~ 1037 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEIL-----DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE 1037 (1158)
T ss_dssp EEECCSCBCEEEEEEE-----ETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC----
T ss_pred EEeecccccEEEEEEE-----ccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcc
Confidence 3333222333333222 2346778889999999876541 222221222 34566654 33322
Q ss_pred ------CeEEEEeCCCcEEEec
Q 010883 460 ------PMLVSSSWDGDVVRWE 475 (498)
Q Consensus 460 ------~~l~s~~~Dg~i~iw~ 475 (498)
..++-++.+|.|-+.-
T Consensus 1038 ~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1038 TSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp ---CEEEEEEEEETTSCEEEEE
T ss_pred ccccccceEEEEecCCEEEEEE
Confidence 3577888899987763
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.64 E-value=0.015 Score=52.50 Aligned_cols=144 Identities=12% Similarity=0.170 Sum_probs=74.6
Q ss_pred CeEEEEEC--CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC----CeEEEEE
Q 010883 189 RHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYD 262 (498)
Q Consensus 189 ~~l~~~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d----g~i~vwd 262 (498)
.+++.|+. ...+.+||..+++.......+... .+| ..+.+ ++..++.|+.+ ..+.+||
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~d 76 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR----------RDA----ACVFW--DNVVYILGGSQLFPIKRMDCYN 76 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC----------BSC----EEEEE--TTEEEEECCBSSSBCCEEEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCccc----------cee----EEEEE--CCEEEEEeCCCCCCcceEEEEe
Confidence 34555654 357899999988766554332211 112 12222 56677777754 6789999
Q ss_pred CCCCeeeEEEeccC-CCeeEEEEeCCCCCEEEEeeCC------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCC
Q 010883 263 LEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 335 (498)
Q Consensus 263 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 335 (498)
+.+++....-.... ..-.+++. .++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++
T Consensus 77 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~ 150 (306)
T 3ii7_A 77 VVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHGMVEA--NG 150 (306)
T ss_dssp TTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TT
T ss_pred CCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeEEEEE--CC
Confidence 99876533221111 11122222 256677777765 45888887621 11111111111111122222 56
Q ss_pred CEEEEEeC---------CCcEEEEeCCC
Q 010883 336 RYLISNGK---------DQAIKLWDIRK 354 (498)
Q Consensus 336 ~~l~s~~~---------dg~i~iwd~~~ 354 (498)
++++.|+. -..+.+||+.+
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCC
Confidence 66666653 23477888766
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.63 E-value=0.026 Score=56.48 Aligned_cols=181 Identities=10% Similarity=0.082 Sum_probs=103.1
Q ss_pred CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-CCeEEEEECCCCce-eccccccccccCcccccc
Q 010883 151 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAA 228 (498)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 228 (498)
....|++.++........ ...... ..+..++|++.+..|..+.. .+.|..+++..... ...... +
T Consensus 16 ~~~~I~~i~~~~~~~~~~-~~~~~~-~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-----~------ 82 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT-IVVGGL-EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-----G------ 82 (619)
T ss_dssp CSSBEEEECCC----------CBCC-SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-----S------
T ss_pred ccccEEEEeCCCCcceEE-EEEcCC-CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-----C------
Confidence 356788888875421111 112222 25788999997777766654 57888888875421 111110 0
Q ss_pred CCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee-CCCeEEEEcC
Q 010883 229 DDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDR 306 (498)
Q Consensus 229 ~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~vwd~ 306 (498)
-.....+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|..+.++++-- ..+.|...++
T Consensus 83 -----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~ 157 (619)
T 3s94_A 83 -----LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 157 (619)
T ss_dssp -----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred -----CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEEC
Confidence 0157889999866555554 45789999998765433333244456788999744454444432 2456776666
Q ss_pred ccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 010883 307 RCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 354 (498)
Q Consensus 307 ~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~ 354 (498)
. +.....+ .........|++++++..|+.+ ...+.|...|+..
T Consensus 158 d-----G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 158 D-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp T-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred C-----CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 4 3322222 2234567899999876666554 4456788888764
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.61 E-value=0.022 Score=51.42 Aligned_cols=186 Identities=10% Similarity=0.060 Sum_probs=95.4
Q ss_pred CEEEEEEC--CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC----CeEEEEECCCCceecccccc
Q 010883 144 SLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVT 217 (498)
Q Consensus 144 ~~la~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~ 217 (498)
.+++.|+. ...+.+||..++.- ............-..+.+ ++++++.|+.+ ..+.+||..+++.......+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSW-TDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEE-EECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCE-ecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 45556654 35689999988632 222111111112222222 66777777754 57899999888765543322
Q ss_pred ccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEEEec-cCCCeeEEEEeCCCCC
Q 010883 218 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGH 290 (498)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 290 (498)
... .+| ..+.+ +++.++.|+.+ ..+.+||..+.+....-.. ....-.+++. .++.
T Consensus 90 ~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 151 (306)
T 3ii7_A 90 TPR----------DSL----AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGL 151 (306)
T ss_dssp SCC----------BSC----EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE
T ss_pred ccc----------cce----eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCE
Confidence 111 112 12222 67777777755 4589999988765332111 1111122233 2456
Q ss_pred EEEEeeC---------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883 291 LIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 354 (498)
Q Consensus 291 ~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~ 354 (498)
+++.|+. -..+.+||+... ....+..+......-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 7777654 345888888621 11111111111111222222 56677777654 3578888776
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.51 E-value=0.028 Score=51.03 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=93.6
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC-----C------CeEEEEECCCCceecc
Q 010883 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----S------PIVHIVDVGSGTMESL 213 (498)
Q Consensus 145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~-----d------~~i~iwd~~~~~~~~~ 213 (498)
+++.|+ ..+.+||..++.-.. .................++++++.|+. . ..+.+||..+++....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344554 579999998874222 111111111222233457888888873 1 1378899888776554
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEEEe-ccCCCeeEEEE
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRIL-AHTSDVNTVCF 284 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~ 284 (498)
...+.... +| ..+.+ +++.++.|+.+ ..+.+||..+.+....-. .....-.+++.
T Consensus 83 ~~~p~~r~----------~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 83 PPLPSPRC----------LF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp CCBSSCEE----------SC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred CCCCcchh----------ce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 33322110 11 11222 56677777632 458999998876432111 11111122233
Q ss_pred eCCCCCEEEEeeC-C-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC-----cEEEEeCC
Q 010883 285 GDESGHLIYSGSD-D-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIR 353 (498)
Q Consensus 285 ~~~~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~ 353 (498)
.++.+++.|+. + ..+.+||+... ....+..+.........+.+ ++++++.|+.++ .+.+||+.
T Consensus 147 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 147 --HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp --ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred --ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 34567777776 2 46888887621 11111111111111222222 567777777654 47788876
Q ss_pred C
Q 010883 354 K 354 (498)
Q Consensus 354 ~ 354 (498)
+
T Consensus 221 ~ 221 (315)
T 4asc_A 221 D 221 (315)
T ss_dssp T
T ss_pred C
Confidence 6
No 313
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.46 E-value=0.0062 Score=65.01 Aligned_cols=268 Identities=10% Similarity=0.140 Sum_probs=152.3
Q ss_pred CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCC
Q 010883 152 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 231 (498)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (498)
...|.|-|+.++..+.+... .--+.-.+|..+.||.-. ..++.|+|+++........+.+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------------- 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (1630)
T ss_pred CceEEEEECCCCCCcccccc------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-------------
Confidence 44788999988644322111 122344688888777664 6789999999877665555443
Q ss_pred CceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEEecc----CCCeeEEEEeCCCCCEEEEee-------CCC
Q 010883 232 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH----TSDVNTVCFGDESGHLIYSGS-------DDN 299 (498)
Q Consensus 232 ~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~s-------~dg 299 (498)
+|.--.|-.+.. |+..+ +..|+-|++... .++..+..| ...|..-..+ ++.++++..+ -.|
T Consensus 107 ----~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 107 ----DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred ----CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCcccc
Confidence 566677775554 44444 457999999743 333333333 3445555554 5666665433 358
Q ss_pred eEEEEcCccccCCCceeEEeccccccEEEEEEcC--C-CCEEEEEeC---CCcEEEEeCCCC-CCccccccCcccccccc
Q 010883 300 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG--D-GRYLISNGK---DQAIKLWDIRKM-SSNASCNLGFRSYEWDY 372 (498)
Q Consensus 300 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 372 (498)
.+.+|... .+....+.||......+.... . ...++.+.. .+.+.|-++... .....+. ...
T Consensus 180 ~mQLyS~e-----r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~-------kk~ 247 (1630)
T 1xi4_A 180 AMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-------KKA 247 (1630)
T ss_pred eeeeeecc-----cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc-------ccc
Confidence 89999884 455556777766554444421 1 223332222 267888888653 1111100 000
Q ss_pred eeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcEEEEeccCCCCeee
Q 010883 373 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 452 (498)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 452 (498)
..+.++|+ ....+..++..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus 248 ~~~~~~~~----------------------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 248 VDVFFPPE----------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred ccccCCcc----------------------cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence 00111111 11111122234455667888889999999999999988766555556655
Q ss_pred eEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 010883 453 CSWHPSQPMLVSSSWDGDVVRWEFPGNG 480 (498)
Q Consensus 453 l~~sp~~~~l~s~~~Dg~i~iw~~~~~~ 480 (498)
.+-+....-++.....|.|.--.++...
T Consensus 306 ~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 306 TAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred eccCCCCCceEEEcCCceEEEEEEccch
Confidence 5554443445555566766655555443
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.45 E-value=0.02 Score=51.78 Aligned_cols=190 Identities=12% Similarity=0.048 Sum_probs=97.2
Q ss_pred cCCCCEEEEEECC----CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----C-----CeEEEEECC
Q 010883 140 SADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S-----PIVHIVDVG 206 (498)
Q Consensus 140 s~dg~~la~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----d-----~~i~iwd~~ 206 (498)
.-++.+++.|+.+ ..+.+||..++. .............-..+.+ ++++++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGT-WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCe-EeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 3456777777642 368899998763 2222111111111122222 6677777665 2 368899998
Q ss_pred CCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEEe-ccCCCee
Q 010883 207 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRIL-AHTSDVN 280 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~~~~~~-~~~~~v~ 280 (498)
+.+.......+... ..| ..+.+ +++.++.|+.+ ..+.+||+.+.+....-. .....-.
T Consensus 99 ~~~W~~~~~~p~~r----------~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 162 (308)
T 1zgk_A 99 TNQWSPCAPMSVPR----------NRI----GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV 162 (308)
T ss_dssp TTEEEECCCCSSCC----------BTC----EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred CCeEeECCCCCcCc----------ccc----EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce
Confidence 87765544322211 011 12222 66777776643 358899998876532211 1111112
Q ss_pred EEEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q 010883 281 TVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLW 350 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iw 350 (498)
+++.. ++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+|
T Consensus 163 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 163 GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 23332 46677777754 45888887521 11111111111112222333 56777777764 458888
Q ss_pred eCCC
Q 010883 351 DIRK 354 (498)
Q Consensus 351 d~~~ 354 (498)
|+.+
T Consensus 237 d~~~ 240 (308)
T 1zgk_A 237 DVET 240 (308)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 8776
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.45 E-value=0.016 Score=53.31 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=110.7
Q ss_pred ceEEEEEcCCCCEEEEEE------------CCCeEEEEECCCC-eEEEEEeecC----CCceeEEEEEeCC--CCC-eEE
Q 010883 133 RAYVSQFSADGSLFVAGF------------QASQIRIYDVERG-WKIQKDILAK----SLRWTVTDTSLSP--DQR-HLV 192 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~------------~dg~i~vw~~~~~-~~~~~~~~~~----~~~~~v~~~~~sp--~~~-~l~ 192 (498)
..-.++..|+|..+++++ .+|.|.++|.++. .....+.... ........+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344566788876555542 6899999998742 1122222211 1234566677655 454 344
Q ss_pred EEE-C--CCeEEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--------------
Q 010883 193 YAS-M--SPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------- 253 (498)
Q Consensus 193 ~~s-~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-------------- 253 (498)
++. . +..|.+|++..+. ......... ..-...+++.+.++|++.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-------------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~ 197 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH 197 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECC-------------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEecccc-------------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence 432 2 4578888775432 211111111 0112588999999998766653
Q ss_pred ---CCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEe-eCCCeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 254 ---SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 254 ---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
..|.|+-+|. ++. ..+...-...+.++|+ ++++.|+.+ +..+.|..|++.... .......+ ......-.+
T Consensus 198 ~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~~g-~l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 198 LGLAWSFVTYYSP--NDV-RVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp TTCCCEEEEEECT--TCC-EEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSEEEEE
T ss_pred ccCCccEEEEEEC--CeE-EEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECCCC-cEecCEEE-eCCCCCceE
Confidence 1245666665 332 2333334567999998 677665555 467899999986211 11112233 223556778
Q ss_pred EEcC-CCCEEEEEeCC-CcEEEEe
Q 010883 330 DSRG-DGRYLISNGKD-QAIKLWD 351 (498)
Q Consensus 330 ~~~~-~~~~l~s~~~d-g~i~iwd 351 (498)
++.+ +|++.+++..+ +.|..|+
T Consensus 272 ~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EECTTTCCEEEEEESCHHHHHSCC
T ss_pred EEeCCCCcEEEEecCCceEEEEEC
Confidence 8998 58887766544 3344443
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.42 E-value=0.0089 Score=55.44 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=98.3
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCC--CceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccc-c
Q 010883 139 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-N 215 (498)
Q Consensus 139 ~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~-~ 215 (498)
...+|..++.+ .++.||.-++..+... +.+.... .-..|..+..+|+|++||..+ +..|.|..+..+...... .
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Y-k~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDSLY-HSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCSSC-EEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCCcc-eEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 44567777766 4578998888754322 2223321 122578899999999999886 458999988743221110 0
Q ss_pred ccccccCccccccC-CCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCe--eeEEEe---------ccCCCee
Q 010883 216 VTEIHDGLDFSAAD-DGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANK--LSLRIL---------AHTSDVN 280 (498)
Q Consensus 216 ~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~---~g~~l~~g~~dg~i~vwd~~~~~--~~~~~~---------~~~~~v~ 280 (498)
.........+.... ......+|..+.|+| .+..|++-..|+.|++||+.... +. .+. .....|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 00000000011100 011245899999999 45689999999999999998522 22 221 2235788
Q ss_pred EEEEeCCCCCEEEEee--CCCeEEEE
Q 010883 281 TVCFGDESGHLIYSGS--DDNLCKVW 304 (498)
Q Consensus 281 ~~~~~~~~~~~l~s~s--~dg~i~vw 304 (498)
+++|. .++-.|+..+ ..|.|+-.
T Consensus 184 S~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred EEEEc-CCCcEEEEEecCCCCCEEEE
Confidence 99997 5777777755 77888754
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.40 E-value=0.08 Score=48.88 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=38.1
Q ss_pred CCcEEEEEecCCeEEEEECCCCcEEEE---eccCCCCeeeeEEcCCCCeEEEEe-CCCcE
Q 010883 416 GQKYIYTGSHDSCVYVYDLVSGEQVAA---LKYHTSPVRDCSWHPSQPMLVSSS-WDGDV 471 (498)
Q Consensus 416 ~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~sp~~~~l~s~~-~Dg~i 471 (498)
+|.++++....+.|...++..++.+.. +......+.++++.|||.++++.. .+|.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 577777777788898888876654332 222345799999999998666543 34533
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.35 E-value=0.029 Score=50.86 Aligned_cols=140 Identities=13% Similarity=0.091 Sum_probs=69.7
Q ss_pred EEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-----C------CeEE
Q 010883 191 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----D------DCIY 259 (498)
Q Consensus 191 l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-----d------g~i~ 259 (498)
++.|+ ..+.+||..+++... ...+.... .........++..++.|+. . ..+.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~--------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 70 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVP--------------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSC--------------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEE
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCC--------------ccceEEEEECCEEEEEcCcccCCCCCccccccceE
Confidence 34454 579999999887643 21111000 1112222347788888873 1 1378
Q ss_pred EEECCCCeeeEEEeccCCCe--eEEEEeCCCCCEEEEeeCC--------CeEEEEcCccccCCCceeEEeccccccEEEE
Q 010883 260 VYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 329 (498)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l 329 (498)
+||..+++... +..-..+- .+++. .++.+++.|+.+ ..+.+||+... ....+..+.........+
T Consensus 71 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 71 QFDHLDSEWLG-MPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEETTTTEEEE-CCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEE
T ss_pred EecCCCCeEEE-CCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEE
Confidence 89998876532 22111111 12233 246677777642 35888887621 111111111111112222
Q ss_pred EEcCCCCEEEEEeC-C-----CcEEEEeCCC
Q 010883 330 DSRGDGRYLISNGK-D-----QAIKLWDIRK 354 (498)
Q Consensus 330 ~~~~~~~~l~s~~~-d-----g~i~iwd~~~ 354 (498)
. -+++.++.|+. + ..+.+||+.+
T Consensus 146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp E--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred E--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 2 25667777775 2 3578888765
No 319
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.34 E-value=0.0011 Score=67.53 Aligned_cols=220 Identities=10% Similarity=0.003 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeEE
Q 010883 197 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA----NKLSLR 271 (498)
Q Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~-~dg~i~vwd~~~----~~~~~~ 271 (498)
.+.|+..++.+.....+.... ..+..++|.+.+..|+... ..+.|+.+++.. ......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~-----------------~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~ 447 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL-----------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 447 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC-----------------TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB
T ss_pred ccceEEEeCCCCcceeeeccC-----------------cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE
Confidence 356777777765543332211 1356788998666666554 457899999875 222222
Q ss_pred EeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe-ccccccEEEEEEcCCCCEEEEEeC-C-CcEE
Q 010883 272 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIK 348 (498)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~-d-g~i~ 348 (498)
+.........|++.+..++++++-...+.|.++++. +.....+ .........|+++|.+.+|+.... . +.|.
T Consensus 448 i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d-----g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~ 522 (699)
T 1n7d_A 448 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-----GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK 522 (699)
T ss_dssp CCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS-----SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred EeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC-----CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence 211223346677753455666665667889999985 2322332 222344567888886555444332 2 5666
Q ss_pred EEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEE-ecCC
Q 010883 349 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SHDS 427 (498)
Q Consensus 349 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg 427 (498)
++++..... ..+.... .. ....++++|++..|+.+ +..+
T Consensus 523 ~~~~dG~~~-----------------------------------~~l~~~~-l~----~PnGlavd~~~~~LY~aD~~~~ 562 (699)
T 1n7d_A 523 KGGLNGVDI-----------------------------------YSLVTEN-IQ----WPNGITLDLLSGRLYWVDSKLH 562 (699)
T ss_dssp BCCSSSCCC-----------------------------------CEESCSS-CS----SCCCEEECTTTCCEEEEETTTT
T ss_pred EEeCCCCCe-----------------------------------eEEEeCC-CC----CccEEEEeccCCEEEEEecCCC
Confidence 666543110 0000000 00 01123566565555544 4567
Q ss_pred eEEEEECCCCcEEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCC
Q 010883 428 CVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 479 (498)
Q Consensus 428 ~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~ 479 (498)
.|.++++........+. ........|++..+ .++++....+.|..++..++
T Consensus 563 ~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred eEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 89999986543333332 11233456666543 35555556678888876443
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.32 E-value=0.1 Score=48.23 Aligned_cols=211 Identities=11% Similarity=0.034 Sum_probs=106.9
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeecCCCceeEEEEEeCCC---CCeEEEEEC----C----Ce
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPD---QRHLVYASM----S----PI 199 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~s~----d----~~ 199 (498)
..-..++|.|||+++++ ..+|.|++++. ++. .+...............|+|+|+ +..|.++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34578999999985554 56699999973 453 11111011112345889999997 444444332 3 56
Q ss_pred EEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC-------------CCeEEEEECC
Q 010883 200 VHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLE 264 (498)
Q Consensus 200 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~-------------dg~i~vwd~~ 264 (498)
|..|+..... ......+ ... +. ....| ....++|.|||.++++.+. .|.|.-++..
T Consensus 107 v~r~~~~~~~~~~~~~~~l---~~~--~~--~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTL---IDG--IP--GAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp EEEEEECSSSCCEEEEEEE---EEE--EE--CCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred EEEEEECCCCcCcCccEEE---EEc--CC--CCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 7777766541 1100000 000 00 01123 2356899999986665432 2456666654
Q ss_pred CC--------eeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCC---eEEEEcCcc--------cc--C--CCceeEEecc
Q 010883 265 AN--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRC--------LN--V--KGKPAGVLMG 321 (498)
Q Consensus 265 ~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~--------~~--~--~~~~~~~~~~ 321 (498)
.. ....-..++. ....++|.|.+++++++-.... .|.+...-. .. . ...++..+..
T Consensus 178 G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 178 GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 32 0111112443 3467999743666655543222 244332110 00 0 0123333311
Q ss_pred ccccEEEEEEc-------CCCCEEEEEeCCCcEEEEeCCC
Q 010883 322 HLEGITFIDSR-------GDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 322 ~~~~v~~l~~~-------~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.......++|. .+|.++++.-..+.|...++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 23456778873 4566666665666777777654
No 321
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.26 E-value=0.079 Score=48.94 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=77.6
Q ss_pred CCCEEEEEEC-CCeEEEEECCC-CeEEEEEeecC-CCceeEEEEEeCCCCCeEEEEEC-C---------CeEEEEECCCC
Q 010883 142 DGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM-S---------PIVHIVDVGSG 208 (498)
Q Consensus 142 dg~~la~~~~-dg~i~vw~~~~-~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~s~-d---------~~i~iwd~~~~ 208 (498)
++.+++.|+. ...+.+||..+ ........... ..+..-..+.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 6677777764 34688999863 11222221111 11111222223 5677777765 2 46889999888
Q ss_pred ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC---------------------------------
Q 010883 209 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------------------------- 255 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d--------------------------------- 255 (498)
+......... .... ...++. .++++++.|+.+
T Consensus 97 ~W~~~~~~~p---------~~r~----~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 97 SWVKLMSHAP---------MGMA----GHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EEEECSCCCS---------SCCS----SEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred cEEECCCCCC---------cccc----cceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 7655443320 0001 122222 467778888754
Q ss_pred ------CeEEEEECCCCeeeEEEecc-CCCe-eEEEEeCCCCCEEEEeeC------CCeEEEEcC
Q 010883 256 ------DCIYVYDLEANKLSLRILAH-TSDV-NTVCFGDESGHLIYSGSD------DNLCKVWDR 306 (498)
Q Consensus 256 ------g~i~vwd~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~~l~s~s~------dg~i~vwd~ 306 (498)
..+.+||..+.+....-... .... .+++.. ++.+++.|+. ...+.+||+
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57999999887654332111 1111 334432 4667777664 235677776
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.23 E-value=0.026 Score=51.08 Aligned_cols=148 Identities=13% Similarity=0.108 Sum_probs=75.1
Q ss_pred CCCCCeEEEEECC----CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC----C-
Q 010883 185 SPDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----D- 255 (498)
Q Consensus 185 sp~~~~l~~~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~----d- 255 (498)
.-++.+++.|+.+ ..+.+||..+.+.......+... .+| ..+.+ ++..++.|+. +
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~ 85 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR----------SGL----AGCVV--GGLLYAVGGRNNSPDG 85 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC----------BSC----EEEEE--TTEEEEECCEEEETTE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc----------ccc----eEEEE--CCEEEEECCCcCCCCC
Confidence 3356677777642 36889999888765553322211 112 11222 5667777765 2
Q ss_pred ----CeEEEEECCCCeeeEEEecc-CCCeeEEEEeCCCCCEEEEeeCC-----CeEEEEcCccccCCCceeEEecccccc
Q 010883 256 ----DCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEG 325 (498)
Q Consensus 256 ----g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~ 325 (498)
..+.+||+.+.+....-... ...-.+++. .++.+++.|+.+ ..+.+||+... ....+..+......
T Consensus 86 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~ 161 (308)
T 1zgk_A 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIG 161 (308)
T ss_dssp EEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBS
T ss_pred CeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccc
Confidence 45889999887643221111 111122232 246677777643 35778887521 11111111111112
Q ss_pred EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 010883 326 ITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 354 (498)
Q Consensus 326 v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~ 354 (498)
...+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 162 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 162 VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 222223 56677777654 3477788765
No 323
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.20 E-value=0.13 Score=47.35 Aligned_cols=252 Identities=14% Similarity=0.079 Sum_probs=122.4
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 254 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~ 254 (498)
....++|.|+|+++ ++..++.|++++. +++ .....+.... ........|+++|+ +..|.++..
T Consensus 30 ~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~-~~~~~~~v~~-----------~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 30 VPWSIAPLGGGRYL-VTERPGRLVLISP-SGK-KLVASFDVAN-----------VGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CEEEEEEEETTEEE-EEETTTEEEEECS-SCE-EEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCc-eEeeccceee-----------cCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 47789999999854 4566799999873 443 2211111000 01125789999997 455555443
Q ss_pred ----C----CeEEEEECCCC--e-----ee-EEEecc-CCCeeEEEEeCCCCCEEEEeeC-------------CCeEEEE
Q 010883 255 ----D----DCIYVYDLEAN--K-----LS-LRILAH-TSDVNTVCFGDESGHLIYSGSD-------------DNLCKVW 304 (498)
Q Consensus 255 ----d----g~i~vwd~~~~--~-----~~-~~~~~~-~~~v~~~~~~~~~~~~l~s~s~-------------dg~i~vw 304 (498)
+ +.|..|+.... . .+ ..+... ......|+|. +++.++++.+. .|.|.-+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri 174 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRV 174 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence 2 56888887654 1 11 112211 1134678997 67877666432 2456655
Q ss_pred cCccccCCC----ceeEEeccccccEEEEEEcC-CCCEEEEEeCCCc---EEEEeCCCCCCccccccCcccccccceeec
Q 010883 305 DRRCLNVKG----KPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQA---IKLWDIRKMSSNASCNLGFRSYEWDYRWMD 376 (498)
Q Consensus 305 d~~~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (498)
+....-... .......++. ....++|+| ++.++++-..... |.+.. ... ...|+...-.
T Consensus 175 ~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~----------nyGwp~~~g~ 241 (354)
T 3a9g_A 175 DEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGG----------NYGWPLATGK 241 (354)
T ss_dssp CTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTC----------BCCTTTCCSC
T ss_pred cCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCC----------cCCCCcccCC
Confidence 553110000 0111112332 345788999 6665554332221 32221 110 0111110000
Q ss_pred CCcCcccccCCCCceEEEE-ccCceeEEEEEEEe--ccccC-CCCcEEEEEecCCeEEEEECCCC-cEE--EEe-ccCCC
Q 010883 377 YPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHF--SPVYS-TGQKYIYTGSHDSCVYVYDLVSG-EQV--AAL-KYHTS 448 (498)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~s-~~~~~l~~g~~dg~i~iwd~~~~-~~~--~~~-~~h~~ 448 (498)
.... ....++..+ ..+. ....+.+ ...|. .+|.++++....+.|...++... +.. ..+ .....
T Consensus 242 ~~~~------~~~~p~~~~~~~~~---ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~ 312 (354)
T 3a9g_A 242 AGRG------EFVDPVIDTGSETW---APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFG 312 (354)
T ss_dssp CCCT------TSCCCSEECTTCCC---CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSC
T ss_pred CCCC------CCcCCEeecCCCCc---CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCC
Confidence 0000 001122222 1111 1112222 11111 36777777777788999988753 332 222 22245
Q ss_pred CeeeeEEcCCCCeEEEEe
Q 010883 449 PVRDCSWHPSQPMLVSSS 466 (498)
Q Consensus 449 ~v~~l~~sp~~~~l~s~~ 466 (498)
.+.++++.|||.++++..
T Consensus 313 rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 313 RLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECTTSCEEEEEC
T ss_pred CeeEEEECCCCcEEEEEe
Confidence 789999999998666654
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.19 E-value=0.091 Score=47.63 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=91.1
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEEC----CC-------eEEEEECCCCceecc
Q 010883 145 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMESL 213 (498)
Q Consensus 145 ~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~----d~-------~i~iwd~~~~~~~~~ 213 (498)
+++.|+. .+.+||..++.-........... ........++.+++.|+. ++ .+.+||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPR--NHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCS--SEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCc--cceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 4444543 48899998874332211111111 122233457788888873 11 277889888776554
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCeeeEEEeccCCCe--eEEEE
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLRILAHTSDV--NTVCF 284 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d-------g~i~vwd~~~~~~~~~~~~~~~~v--~~~~~ 284 (498)
...+... ..|. .+.+ +++.++.|+.+ ..+.+||+.+.+.... .....+. .+++.
T Consensus 94 ~~~p~~r----------~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 94 PPLPSAR----------CLFG----LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS 156 (318)
T ss_dssp SCBSSCB----------CSCE----EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE
T ss_pred CCCCccc----------cccc----eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE
Confidence 3332211 1121 1222 56777777754 3588899988765432 1111111 12222
Q ss_pred eCCCCCEEEEeeC------CCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEeCC
Q 010883 285 GDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIR 353 (498)
Q Consensus 285 ~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~ 353 (498)
.++.+++.|+. -..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||+.
T Consensus 157 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 157 --HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp --ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETT
T ss_pred --ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECC
Confidence 34667777764 235888988621 11111111111111122222 56777777654 246678876
Q ss_pred C
Q 010883 354 K 354 (498)
Q Consensus 354 ~ 354 (498)
+
T Consensus 231 ~ 231 (318)
T 2woz_A 231 T 231 (318)
T ss_dssp T
T ss_pred C
Confidence 6
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.19 E-value=0.046 Score=50.17 Aligned_cols=207 Identities=15% Similarity=0.193 Sum_probs=105.9
Q ss_pred cEEEEEEcCCCCEEEEE------------eCCCeEEEEECCCC--ee-eEEEec-----cCCCeeEEEEeCC-CCC--EE
Q 010883 236 GIFSLKFSTDGRELVAG------------SSDDCIYVYDLEAN--KL-SLRILA-----HTSDVNTVCFGDE-SGH--LI 292 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g------------~~dg~i~vwd~~~~--~~-~~~~~~-----~~~~v~~~~~~~~-~~~--~l 292 (498)
...++...|+|..++++ ..+|.|.++|..+. +. ...+.+ ..-....+.+.+. ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 35567778888654444 16899999999742 22 112222 2235667776532 333 44
Q ss_pred EEeeC--CCeEEEEcCccccCCCceeEEeccc-cccEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCCCccccccCcc
Q 010883 293 YSGSD--DNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFR 366 (498)
Q Consensus 293 ~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~ 366 (498)
++-.. +..|.+|++.........+..+.+. -...+.+.+.++|.+.++... |.....++.-.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~------------ 198 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL------------ 198 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT------------
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc------------
Confidence 44333 5678888876322112233333332 235788889888887766531 10000000000
Q ss_pred cccccceeecCCcCcccccCCCCceEEEEccCce--eEEEEEEEeccccCCCCcEEEEEe-cCCeEEEEECCC-CcE--E
Q 010883 367 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVS-GEQ--V 440 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~-~~~--~ 440 (498)
-.+ ...+..+..... ...-......++||||++.|+.+. ..+.|+.|++.. ++. .
T Consensus 199 ----------~~~---------~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~ 259 (355)
T 3sre_A 199 ----------GLA---------WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL 259 (355)
T ss_dssp ----------TCC---------CEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred ----------cCC---------ccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC
Confidence 000 011111111100 001111223457888998887775 478999999863 332 2
Q ss_pred EEeccCCCCeeeeEEcC-CCCeEEEEeCCC-cEEEe
Q 010883 441 AALKYHTSPVRDCSWHP-SQPMLVSSSWDG-DVVRW 474 (498)
Q Consensus 441 ~~~~~h~~~v~~l~~sp-~~~~l~s~~~Dg-~i~iw 474 (498)
..+ ...+..-.+++.+ +|.+.+++..+| .|..|
T Consensus 260 ~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 260 RVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp EEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred EEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence 233 2245667889999 598888776553 33334
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.00 E-value=0.18 Score=45.10 Aligned_cols=197 Identities=10% Similarity=0.113 Sum_probs=124.4
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEE
Q 010883 239 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 318 (498)
Q Consensus 239 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 318 (498)
+.-.+|..+.||.-. ...+.++|+++.+.+....- ..+|.-=.|- +.+.|+-.+ +..|+-|++.. ...+...
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~---~s~P~kv 142 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKM 142 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEEC--SSSEEEEEE-SSEEEEEESST---TCCCEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEec--CCCeEEEEc-CCcEEEEcccC---CCCCcee
Confidence 455688888777765 67899999999988776643 4577777885 344555554 45899999863 3456666
Q ss_pred ecccc----ccEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCC
Q 010883 319 LMGHL----EGITFIDSRGDGRYLISNGK-------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 387 (498)
Q Consensus 319 ~~~~~----~~v~~l~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (498)
+..|. ..|.....+++.++++..+- .|.+.+|..+.
T Consensus 143 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--------------------------------- 189 (365)
T 2xzh_A 143 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--------------------------------- 189 (365)
T ss_dssp EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---------------------------------
T ss_pred eecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc---------------------------------
Confidence 65553 35777788899998765442 36788888876
Q ss_pred CCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCC---c-----EEEE-ec---cCCCCeee
Q 010883 388 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSG---E-----QVAA-LK---YHTSPVRD 452 (498)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~---~-----~~~~-~~---~h~~~v~~ 452 (498)
+.-..+++|...-. ..... .......+++.+.. .+.++|.++... . .... +- .-.+-..+
T Consensus 190 --~~sQ~ieGhaa~F~--~~~~~-g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVa 264 (365)
T 2xzh_A 190 --KVSQPIEGHAASFA--QFKME-GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 264 (365)
T ss_dssp --TEEEEECCSEEEEE--EECCT-TCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEE
T ss_pred --cccceeeeeeeeeE--EEecC-CCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEE
Confidence 44455566652111 11000 01111223343333 258999988432 1 1111 11 12344567
Q ss_pred eEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 453 CSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 453 l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
+..++....+..-+.-|.|++||+.++..
T Consensus 265 mqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 265 MQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 88888888888889999999999988753
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.00 E-value=0.092 Score=47.59 Aligned_cols=134 Identities=12% Similarity=0.063 Sum_probs=64.8
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCe
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DD-------CIYVYDLEANK 267 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~----dg-------~i~vwd~~~~~ 267 (498)
.+.+||..+++... ........ .........++..++.|+. ++ .+.+||..+.+
T Consensus 25 ~~~~yd~~~~~W~~-~~~~~~~~--------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 25 AAVAYDPMENECYL-TALAEQIP--------------RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEEEETTTTEEEE-EEECTTSC--------------SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred ceEEECCCCCceec-ccCCccCC--------------ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 48899998887644 11110000 1112223457778888873 11 27888988876
Q ss_pred eeEEEeccC--CCeeEEEEeCCCCCEEEEeeCC-------CeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEE
Q 010883 268 LSLRILAHT--SDVNTVCFGDESGHLIYSGSDD-------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 338 (498)
Q Consensus 268 ~~~~~~~~~--~~v~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 338 (498)
... +.... ..-.+++.. ++.+++.|+.+ ..+.+||+... ....+..+......-..+. .+++++
T Consensus 90 W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~--~~~~iy 162 (318)
T 2woz_A 90 WVG-LPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGHNVIS--HNGMIY 162 (318)
T ss_dssp EEE-CSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESCEEEE--ETTEEE
T ss_pred EEE-CCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCcccccEEEE--ECCEEE
Confidence 532 21111 111223332 46677777754 24777887521 1111111111111111222 356666
Q ss_pred EEEeCC------CcEEEEeCCC
Q 010883 339 ISNGKD------QAIKLWDIRK 354 (498)
Q Consensus 339 ~s~~~d------g~i~iwd~~~ 354 (498)
+.|+.+ ..+.+||+.+
T Consensus 163 v~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 163 CLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EECCEESSSCBCCCEEEEETTT
T ss_pred EEcCCCCCCCccceEEEEcCCC
Confidence 776642 3478888776
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.83 E-value=0.32 Score=45.34 Aligned_cols=198 Identities=10% Similarity=0.109 Sum_probs=125.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeE
Q 010883 238 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 317 (498)
Q Consensus 238 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 317 (498)
-+.-.+|..+.||.-. ...+.|+|+++...+....- ..+|.-=.|. +.+.|+-.+ +..|+-|++.. ...+..
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~---~s~P~k 140 (494)
T 1bpo_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVK 140 (494)
T ss_dssp SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEE--ETTEEEEEC-SSEEEEEESSS---SCCCEE
T ss_pred ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEec--CCCeEEEEc-CCeeEEecccC---CCCchh
Confidence 3456788888777665 67899999999888777643 4467777886 334555444 45899999863 345666
Q ss_pred Eecccc----ccEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccC
Q 010883 318 VLMGHL----EGITFIDSRGDGRYLISNG-------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 386 (498)
Q Consensus 318 ~~~~~~----~~v~~l~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
.+..|. ..|.....+++.++++..+ -.|.+.+|..+.
T Consensus 141 vFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------------------------------- 188 (494)
T 1bpo_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------------------------------- 188 (494)
T ss_dssp EEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--------------------------------
T ss_pred heecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--------------------------------
Confidence 665553 3577778899999877443 246788888876
Q ss_pred CCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec---CCeEEEEECCCC--------cEEEEec----cCCCCee
Q 010883 387 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSG--------EQVAALK----YHTSPVR 451 (498)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~--------~~~~~~~----~h~~~v~ 451 (498)
+.-..+++|...-. .....- ......+++.+.. .+.++|.++... +....+. .-.+-..
T Consensus 189 ---~~sQ~ieGhaa~F~--~~~~~g-~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 189 ---KVSQPIEGHAASFA--QFKMEG-NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp ---CCEEEECCSEEEEE--EEECTT-CSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred ---cccchheeeeeeeE--EEecCC-CCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 34445555542111 111100 0011223444433 278999998543 1122221 1234456
Q ss_pred eeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 452 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 452 ~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
++..++....+..-+.-|.|++||+.++..
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEecccCCEEEEEecCceEEEEeccccee
Confidence 788888888888889999999999988753
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.69 E-value=0.032 Score=51.83 Aligned_cols=122 Identities=16% Similarity=0.250 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------------EEEEEeecC---CCceeEEEEEeCCC---CCeEEEE
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAK---SLRWTVTDTSLSPD---QRHLVYA 194 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~------------~~~~~~~~~---~~~~~v~~~~~sp~---~~~l~~~ 194 (498)
.|..+..||+|++||..+. ..|.|-.+..+. ......... ....+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6788999999999999864 578888887331 111111110 12457999999994 4689999
Q ss_pred ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe--CCCeEEEE
Q 010883 195 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVY 261 (498)
Q Consensus 195 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~--~dg~i~vw 261 (498)
..|+.|++||+........ .+..... .|. .......|.+++|.+++-.|.+.+ ..|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~--~fg---~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNN--SFG---LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCS--EEE---SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhcccc--ccC---CCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986332111 1111100 011 112224799999999887777755 77887754
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.68 E-value=0.48 Score=45.31 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=61.5
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecC-----CCceeEEEEEeCCC---CCeEEEEEC-------
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSPD---QRHLVYASM------- 196 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~---~~~l~~~s~------- 196 (498)
..-+.++|.|||+++++-...+.|++++..++.......... ........|+|+|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 345799999999977776444578888865553221111111 12446789999995 444444332
Q ss_pred ------CCeEEEEECCCC--ceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883 197 ------SPIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 253 (498)
Q Consensus 197 ------d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~ 253 (498)
...|.-++...+ .......+ ...+ . ....| ....|+|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i---~~~~--p--~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDL---LAGL--P--SSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEE---EEEE--C--CCSSC--CEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEE---EEcC--C--CCCCC--CCCeEeECCCCeEEEEEC
Confidence 134555554332 11100000 0000 0 01123 468899999998777654
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.61 E-value=0.37 Score=43.17 Aligned_cols=173 Identities=11% Similarity=0.070 Sum_probs=95.2
Q ss_pred EcCCCCEEEEEE--CCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECC--------------CeEEE
Q 010883 139 FSADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHI 202 (498)
Q Consensus 139 ~s~dg~~la~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d--------------~~i~i 202 (498)
|+++|.+++... .++.|...+.+... ..++.. -.+--+++++.+|..+... ..|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 345777777664 25666666665432 222211 1123457899999887653 36777
Q ss_pred EECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCeeeEEEeccCCC
Q 010883 203 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----SDDCIYVYDLEANKLSLRILAHTSD 278 (498)
Q Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (498)
.++..++...+... .+..|+++++.|+-.. .+..|+..++.... ..++..+..
T Consensus 93 i~~dg~~~~~l~~~---------------------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~- 149 (302)
T 3s25_A 93 IKRNGHGSTVLDPD---------------------PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL- 149 (302)
T ss_dssp EETTSCCCEEEECS---------------------CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-
T ss_pred EeCCCCcceEeecC---------------------CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-
Confidence 77777654332211 1236777888888775 34567777776443 344544433
Q ss_pred eeEEEEeCCCCCEEEEee-CCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCC--cEEEEeCCC
Q 010883 279 VNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRK 354 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~ 354 (498)
..++ +.++.|+-.+ ....|.+-++. ... ...+.. +... ..+.|++.+|+-....+ .|..-++..
T Consensus 150 ---~~~~-~~g~~iy~t~~g~~~Iy~~~l~----g~~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 ---FTCN-TSDRYFYYNNPKNGQLYRYDTA----SQS-EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp ---CCSE-EETTEEEEECTTTCCEEEEETT----TTE-EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred ---eEee-EECCEEEEEeCCCceEEEEECC----CCC-EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 3344 3455555444 36778887774 222 223221 2222 33568888887655433 455555544
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.59 E-value=0.091 Score=48.52 Aligned_cols=51 Identities=14% Similarity=0.054 Sum_probs=26.4
Q ss_pred eEEEEECCCCc--EEEEeccCCCCeeeeEEcCCCCeEEEEeCCC------cEEEecCCCCC
Q 010883 428 CVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG------DVVRWEFPGNG 480 (498)
Q Consensus 428 ~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~~~Dg------~i~iw~~~~~~ 480 (498)
.+.+||+.+.+ .+..+...... ..+...++++++.||.++ .|.++++.+++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 57889987654 33333322222 222334778888888653 35555776554
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.56 E-value=0.31 Score=43.70 Aligned_cols=134 Identities=9% Similarity=0.121 Sum_probs=73.6
Q ss_pred CCCCCeEEEEEC--CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCC-------
Q 010883 185 SPDQRHLVYASM--SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------- 255 (498)
Q Consensus 185 sp~~~~l~~~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~d------- 255 (498)
++++.+|..... ++.|...+.+......+.. -.+--++++|.+|+.....
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---------------------~~~~~i~~~g~~Iyy~~~~~~~~~~~ 80 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---------------------DTAMYINADKNYVYYVRNNNQKITSQ 80 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---------------------EEEEEEEECSSEEEEEEECC------
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---------------------CceeeEEEcCCEEEEEECCCCccccc
Confidence 356666666542 4566666665544322211 1233457788888777543
Q ss_pred -------CeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEee--CCC--eEEEEcCccccCCCceeEEeccccc
Q 010883 256 -------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDN--LCKVWDRRCLNVKGKPAGVLMGHLE 324 (498)
Q Consensus 256 -------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 324 (498)
..|+..++...+. ..+.. .. +..|+ +.++.|+-.. .++ .|..-++. +.....+..+..
T Consensus 81 ~~~~~n~~~Iy~i~~dg~~~-~~l~~--~~--~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~d-----Gs~~~~lt~~~~ 149 (302)
T 3s25_A 81 TFFSYDRNSLCRIKRNGHGS-TVLDP--DP--CIYAS-LIGNYIYYLHYDTQTATSLYRIRID-----GEEKKKIKNHYL 149 (302)
T ss_dssp CCSSCCSEEEEEEETTSCCC-EEEEC--SC--EEEEE-EETTEEEEEEESSSSCEEEEEEETT-----SCCCEEEESSCC
T ss_pred ceeccCCCeEEEEeCCCCcc-eEeec--CC--ccEEE-EeCCEEEEEeecCCCCceEEEEECC-----CCCeEEEeCCCc
Confidence 4688888877653 22322 12 22555 4566666655 344 45555553 333344443322
Q ss_pred cEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 010883 325 GITFIDSRGDGRYLISNGK-DQAIKLWDIRK 354 (498)
Q Consensus 325 ~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~ 354 (498)
..++++++.|+-.+. ...|.+.++..
T Consensus 150 ----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 150 ----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp ----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred ----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 456778888875554 56777777765
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.43 Score=43.34 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=70.1
Q ss_pred CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCe
Q 010883 189 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANK 267 (498)
Q Consensus 189 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~ 267 (498)
..+++++.||.|.-+|..+|+.............+... +. ....++..++.. +.||.|+.++..+|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-----~~-------~~~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-----EP-------SRLETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-----CS-------CTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-----CC-------ccccCCcEEEEEECCCCEEEEEECCCCc
Confidence 46788999999999999999887766544101000000 00 000133333333 579999999998886
Q ss_pred eeEEEec----cCCCeeE---EEEeC----CCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc
Q 010883 268 LSLRILA----HTSDVNT---VCFGD----ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 321 (498)
Q Consensus 268 ~~~~~~~----~~~~v~~---~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 321 (498)
....+.. ...++.. ....+ ..+..+++|+.+|.+...|++ +++.+..+..
T Consensus 79 ~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~----tG~~~W~~~~ 139 (339)
T 2be1_A 79 QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML----NGEIISAFGP 139 (339)
T ss_dssp EEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT----TCCEEEEEST
T ss_pred EEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC----CCcEEEEEec
Confidence 5544331 1222221 00000 145688999999999999998 7888877753
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.53 E-value=0.62 Score=44.84 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=60.4
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeecCCCc----------------------eeE--EEEEeC---CCCCeEEEEEC-C
Q 010883 146 FVAGFQASQIRIYDVERGWKIQKDILAKSLR----------------------WTV--TDTSLS---PDQRHLVYASM-S 197 (498)
Q Consensus 146 la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v--~~~~~s---p~~~~l~~~s~-d 197 (498)
|.+|+..|.|+|+-+.++..+..+....... +.. ..+++. .||++|..-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6678889999999999987766543322110 000 112222 26788888764 5
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEc--CCCCEEEEEeC
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSS 254 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~g~~l~~g~~ 254 (498)
..|...+++.-++..+..++... .+..++|- |+..++++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~---------------~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQ---------------AIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCS---------------CEEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCc---------------CcccccccccCCccEEEecce
Confidence 67888898888777766655433 56667775 56667777664
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.31 E-value=0.37 Score=40.41 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=84.6
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
.+.+++|+|+|.+.++ .+|.+.-.+..+............. ...+.. ...++.|.|+|.+.++ .||.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I--------G~~Gw~-~F~a~~fD~~G~LYav--~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI--------GNGGWN-QFQFLFFDPNGYLYAV--SKDK 108 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE--------ECSCGG-GCSEEEECTTSCEEEE--ETTE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe--------cccccc-cceEEEECCCCCEEEe--CCCE
Confidence 5779999999986666 6777666665443222211111000 000111 1467899999986666 5699
Q ss_pred EEEEECCCCeee------EEEe-ccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCC---ceeEEeccccccEE
Q 010883 258 IYVYDLEANKLS------LRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG---KPAGVLMGHLEGIT 327 (498)
Q Consensus 258 i~vwd~~~~~~~------~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~v~ 327 (498)
|+-++-.+.... ..+- .--..+..|.+. +++.+.++. |+.++-+......... .....-...-...+
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 988876432211 1111 112467888886 788777666 7775443322100000 01111112233455
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 328 FIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.+.|.+++.+.++. ++ ++|....
T Consensus 186 ~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EEEECTTSCEEEEE--TT--EEEEESC
T ss_pred EEEECCCCcEEEEe--CC--eEEecCC
Confidence 57799999877766 66 4554433
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.28 E-value=0.22 Score=41.77 Aligned_cols=150 Identities=13% Similarity=0.012 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCC
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 207 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~ 207 (498)
.+..++|+|+|.+.++ .+|.+.-.+..++. .....+-..+... -.++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999997777 67765555543310 0011111111111 367899999998777 569888777533
Q ss_pred Cceecc-ccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEEe-ccCCCe
Q 010883 208 GTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK------LSLRIL-AHTSDV 279 (498)
Q Consensus 208 ~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~------~~~~~~-~~~~~v 279 (498)
...... ........ +-=..+..|.|.|+|.+.++. |+.++-+...+.. ....+. ..-...
T Consensus 117 ~~~~~Wl~~a~~vg~----------~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 117 SDTDNWIARATEVGS----------GGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp STTCCHHHHSEEEEC----------SSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred CCCCceeccccEecc----------CCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceE
Confidence 221111 11011000 001257899999999866665 7876544333221 111221 222233
Q ss_pred eEEEEeCCCCCEEEEeeCCCeEE
Q 010883 280 NTVCFGDESGHLIYSGSDDNLCK 302 (498)
Q Consensus 280 ~~~~~~~~~~~~l~s~s~dg~i~ 302 (498)
+.+.|. +++.+.++. +|.+.
T Consensus 185 r~l~f~-~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 185 KFLFFS-SVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEEEC-TTSCEEEEE--TTEEE
T ss_pred EEEEEC-CCCcEEEEe--CCeEE
Confidence 445665 777766655 66443
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.08 E-value=0.4 Score=48.76 Aligned_cols=199 Identities=16% Similarity=0.099 Sum_probs=106.0
Q ss_pred CCCCEEEEEECC----CeEEEEECCCCeEEEEEee-----cCCCceeEEEEEeCCCCCeEEEEECC------CeEEEEEC
Q 010883 141 ADGSLFVAGFQA----SQIRIYDVERGWKIQKDIL-----AKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDV 205 (498)
Q Consensus 141 ~dg~~la~~~~d----g~i~vw~~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~s~d------~~i~iwd~ 205 (498)
.++.+++.|+.+ ..+.+||..++.-...... ....+..-..+.+..++++++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888753 4588999887632221101 11111122233333377788887753 35889999
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEEe-----ccCCC
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRIL-----AHTSD 278 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg--~i~vwd~~~~~~~~~~~-----~~~~~ 278 (498)
.+.+.......+... .+| +++...+++.++.|+.++ .+.+||..+.+....-. .....
T Consensus 476 ~t~~W~~~~~~p~~R----------~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 540 (695)
T 2zwa_A 476 KTREWSMIKSLSHTR----------FRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLV 540 (695)
T ss_dssp TTTEEEECCCCSBCC----------BSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred CCCcEEECCCCCCCc----------ccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccc
Confidence 887765554332211 112 223323788888887654 69999999876533211 11122
Q ss_pred eeEEEEeCCCCCEEEEeeC--C-----CeEEEEcCccccC----CCceeEEec-cccccEEEEEEcCCCCEEEEEeCC--
Q 010883 279 VNTVCFGDESGHLIYSGSD--D-----NLCKVWDRRCLNV----KGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKD-- 344 (498)
Q Consensus 279 v~~~~~~~~~~~~l~s~s~--d-----g~i~vwd~~~~~~----~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d-- 344 (498)
..++.+....+.+++.|+. + ..+.+||+..... ....+.... ....... +....++++++.|+.+
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSS
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCC
Confidence 2335555333667777775 2 4588899863210 011111111 1111122 2233336777777743
Q ss_pred ------CcEEEEeCCCC
Q 010883 345 ------QAIKLWDIRKM 355 (498)
Q Consensus 345 ------g~i~iwd~~~~ 355 (498)
..+.+||+.+.
T Consensus 620 ~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CCCCTTTSEEEEETTTT
T ss_pred CCCCCCCeEEEEECCCC
Confidence 45888888763
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.46 Score=43.12 Aligned_cols=193 Identities=9% Similarity=0.029 Sum_probs=101.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEe--CCCCCeEEEE--ECCCeEEEEECCCCceecccccccc
Q 010883 144 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEI 219 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~--s~d~~i~iwd~~~~~~~~~~~~~~~ 219 (498)
.+++.++.||.|.-.|..+|+...+.... ...++....- .+.+..++.+ +.||.|..++..+|...........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 46888999999999999999777765433 1112222110 1112233433 5799999999988855433332221
Q ss_pred ccCccccccCCCCceecEEE---EEE-----cCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccC--CC-----eeEEEE
Q 010883 220 HDGLDFSAADDGGYSFGIFS---LKF-----STDGRELVAGSSDDCIYVYDLEANKLSLRILAHT--SD-----VNTVCF 284 (498)
Q Consensus 220 ~~~~~~~~~~~~~h~~~i~~---~~~-----s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~-----v~~~~~ 284 (498)
... .++.. ... +..+..+++|+.+|.+...|+.+|+.+..+.... .. ..|...
T Consensus 89 v~~------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~ 156 (339)
T 2be1_A 89 VST------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156 (339)
T ss_dssp HTT------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred eec------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence 110 01111 000 0134478999999999999999999988875321 10 111111
Q ss_pred e----CCCCCEEEEeeCCCeEEEEcCccccCCCc----eeEEecccccc--E-EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 010883 285 G----DESGHLIYSGSDDNLCKVWDRRCLNVKGK----PAGVLMGHLEG--I-TFIDSRGDGRYLISNGKDQAIKLWDIR 353 (498)
Q Consensus 285 ~----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~--v-~~l~~~~~~~~l~s~~~dg~i~iwd~~ 353 (498)
. +..+..++.+..+..+.+.+ + .+. ........... + ..-..+.|+.+ +.++.||.|..+|..
T Consensus 157 ~d~~~d~~~~~v~ig~~~y~v~~~~-~----sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~ 230 (339)
T 2be1_A 157 EKIKLQECENMIVIGKTIFELGIHS-Y----DGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD 230 (339)
T ss_dssp --------CCEEEEEEEEEECEECC-T----TSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred cccccccCCCeEEEecceEEEEEEC-C----CCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence 0 01235677777777777666 2 221 00111110000 0 00001224555 447888989888887
Q ss_pred CCC
Q 010883 354 KMS 356 (498)
Q Consensus 354 ~~~ 356 (498)
++.
T Consensus 231 ~G~ 233 (339)
T 2be1_A 231 FRI 233 (339)
T ss_dssp TCC
T ss_pred CCc
Confidence 643
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.01 E-value=0.36 Score=44.07 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=64.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---cCCCceeEEEEEeCCC---CCeEEEE-E--CCCeEE
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYA-S--MSPIVH 201 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~---~~~l~~~-s--~d~~i~ 201 (498)
-..-+.++|.|||+++++--..|.|++++..++........ ..........|+|+|+ +..|... + .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 44568999999999877765589999998765543211111 1122446899999996 3334332 2 345566
Q ss_pred EEECCCCcee--ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEe
Q 010883 202 IVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 253 (498)
Q Consensus 202 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~ 253 (498)
-|.+..+... ...........+. ....| ....|+|.|||.+.++.+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p----~~~~H--~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIP----KGVIH--NGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEEC----CCSSC--CCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCC----CCCCc--cCccccCCCCCCEEEEEC
Confidence 6666542210 0000000000000 01234 345789999998766654
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.97 E-value=0.92 Score=41.35 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=123.5
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEE-e
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG-S 253 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g-~ 253 (498)
....|+|.|+|+++++--..|.|++++..+++......+.... .........|+++|+ +..|.+. +
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~----------~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS----------PSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----------CBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee----------ecCCCCceeeEeccccccCCEEEEEEe
Confidence 4778999999997766554899999987665543222111100 011236889999995 3445443 2
Q ss_pred --CCCeEEEEECCCC----------eeeE-EEec-cCCCeeEEEEeCCCCCEEEEeeC-------------CCeEEEEcC
Q 010883 254 --SDDCIYVYDLEAN----------KLSL-RILA-HTSDVNTVCFGDESGHLIYSGSD-------------DNLCKVWDR 306 (498)
Q Consensus 254 --~dg~i~vwd~~~~----------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~ 306 (498)
.++.|.-|.+..+ +.+. .+.. ..-....|.|. +++.+.++.+. .|.|.-.+.
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 3456666766541 1111 1221 11134568997 67777776542 345554554
Q ss_pred ccccCCC----ceeEEeccccccEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCCCccccccCcccccccceeecCCcCc
Q 010883 307 RCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 381 (498)
Q Consensus 307 ~~~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
...-... .....-.+|. ....++|+|+|.++++-. .|+.=.|--+... ...-|....-. ..
T Consensus 182 dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G----------~nyGwP~~~g~--~~- 247 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPG----------DNYGWPEAEGK--GG- 247 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTT----------CBCCTTTCCSS--CC-
T ss_pred CCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCC----------CEecCCcccCC--CC-
Confidence 3110000 0111122343 345788999877655432 2322222222211 11112111000 00
Q ss_pred ccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCCCcE----EEEeccCCCCeeeeEEcC
Q 010883 382 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHP 457 (498)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~sp 457 (498)
......++..+..+.. ....+.+. +|.++...-..+.|....+..... ...+.+..+.+.+++..|
T Consensus 248 ---~~~~~~P~~~~~~~~~--ap~G~~~~-----~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p 317 (347)
T 3das_A 248 ---GSGFHDPVAQWSTDEA--SPSGIAYA-----EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG 317 (347)
T ss_dssp ---CTTCCCCSEEECTTTC--CEEEEEEE-----TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred ---CccccCCcEecCCCCC--CCcceEEE-----cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence 0011233444433210 11112121 355555555566676666654432 233444456889999999
Q ss_pred CCCeEEEEe
Q 010883 458 SQPMLVSSS 466 (498)
Q Consensus 458 ~~~~l~s~~ 466 (498)
||.++++.+
T Consensus 318 DG~lyv~td 326 (347)
T 3das_A 318 GDKLWLVTS 326 (347)
T ss_dssp TTEEEEEEC
T ss_pred CCcEEEEEc
Confidence 998666554
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.71 E-value=0.75 Score=43.93 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=60.5
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC---CCEEEEEeC
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 254 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~---g~~l~~g~~ 254 (498)
....|+|.|+|+++++-...+.|.+++..++.......+..... ..........|+|+|+ +..|.+...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~--------~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN--------DADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC--------CTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc--------ccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 46789999999977665444578888766555432222211100 0001236889999995 555554432
Q ss_pred -------------CCeEEEEECCCC--e-----eeEE-Eec-cCCCeeEEEEeCCCCCEEEEee
Q 010883 255 -------------DDCIYVYDLEAN--K-----LSLR-ILA-HTSDVNTVCFGDESGHLIYSGS 296 (498)
Q Consensus 255 -------------dg~i~vwd~~~~--~-----~~~~-~~~-~~~~v~~~~~~~~~~~~l~s~s 296 (498)
...|.-+++..+ + .+.. +.. ..-....|+|. +++.+.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~G 162 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIG 162 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEEC
Confidence 235666665332 1 1111 211 11246889997 6777776644
No 343
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.70 E-value=0.55 Score=50.70 Aligned_cols=219 Identities=11% Similarity=0.110 Sum_probs=125.2
Q ss_pred CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCC
Q 010883 198 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 277 (498)
Q Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 277 (498)
..|.|.|+..+.......+ ..-+.-.+|..+.||.-. ..++.|+|+++...+....- ..
T Consensus 48 ~~vvIidl~~~~~~~rrpi-------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (1630)
T ss_pred ceEEEEECCCCCCcccccc-------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CC
Confidence 3688888877654322221 233455677777666654 67899999998877665533 44
Q ss_pred CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccc----cccEEEEEEcCCCCEEEEEe-------CCCc
Q 010883 278 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGITFIDSRGDGRYLISNG-------KDQA 346 (498)
Q Consensus 278 ~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~~-------~dg~ 346 (498)
+|.-=.|. +.+.|+..+ +..|+.|++.. ...|+..+..| ...|..-..+++.++++..+ ..|.
T Consensus 107 ~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 107 DVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CceEEEec--CCCeeEEEc-CCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence 67777885 334444443 45899999962 33455555444 35677777888888877443 3477
Q ss_pred EEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEEeccccCCCCcEEEEEec-
Q 010883 347 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH- 425 (498)
Q Consensus 347 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~- 425 (498)
+.+|......+ ..+.||...-...... ...+...+++.+..
T Consensus 181 mQLyS~er~~s-----------------------------------Q~iegha~~F~~~~~~---~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 181 MQLYSVDRKVS-----------------------------------QPIEGHAASFAQFKME---GNAEESTLFCFAVRG 222 (1630)
T ss_pred eeeeecccccc-----------------------------------hhhhHhHhhhheeccC---CCCCCceEEEEEEec
Confidence 88888776332 2222332110000000 00011222222222
Q ss_pred --CCeEEEEECCCC---cE------EEEec---cCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 010883 426 --DSCVYVYDLVSG---EQ------VAALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 481 (498)
Q Consensus 426 --dg~i~iwd~~~~---~~------~~~~~---~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~~~~ 481 (498)
.+.++|.++... .. +..+- .-.+-..++..++....+...+.-|.|+++|+.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 267888887542 11 11111 1123345677787777888888899999999988754
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.40 E-value=2.9 Score=42.98 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=110.3
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCce
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 210 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~ 210 (498)
...|.++.-..+|. |..|+.+| +..||..++. ... ........|.++.. .++ .|..++.+ -+..++..+++.
T Consensus 62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~-f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~ 133 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADR-YEQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL 133 (758)
T ss_dssp SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTE-ECC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE
T ss_pred CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCE-EEC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE
Confidence 45689988887774 55566665 7899988762 211 11111224766654 344 45556655 578888877654
Q ss_pred eccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEecc-----CCCeeEEEEe
Q 010883 211 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFG 285 (498)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~ 285 (498)
........ .+ ....|.++....+|.+ ..|+.+ -|..++..+++........ ...|.++...
T Consensus 134 ~~~~~~~~---~l---------~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 199 (758)
T 3ott_A 134 TSFDTRRN---GL---------PNNTIYSIIRTKDNQI-YVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED 199 (758)
T ss_dssp EEECHHHH---CC---------SCSCEEEEEECTTCCE-EEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred EEeccCCC---Cc---------CCCeEEEEEEcCCCCE-EEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence 33211000 00 0125888888888874 445555 4888898776543211111 1247788764
Q ss_pred CCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 286 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 286 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.++..|..|+. +-+..+|.. ..............|.++....+|.+.+ |+.+ -+.+++..+
T Consensus 200 -~~~~~lWigt~-~Gl~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~ 260 (758)
T 3ott_A 200 -TTRQCVWIGTE-GYLFQYFPS----TGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDT 260 (758)
T ss_dssp -TTTTEEEEEEE-EEEEEEETT----TTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTT
T ss_pred -CCCCEEEEEEC-CCCeEEcCC----CCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCC
Confidence 55555555554 457778865 3222111111234588888888887655 4444 578888765
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.30 E-value=3.1 Score=42.74 Aligned_cols=197 Identities=9% Similarity=-0.004 Sum_probs=108.7
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCcee
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 211 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~ 211 (498)
..|.++...+++..|..|+. +-|..++..++... ..... ....|.++...++|.+.+ |+.+ -+.+++..++...
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK-QTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQ 264 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE-EEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCE
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE-eccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEE
Confidence 34888988888776555654 45888998776322 21111 123688888888777655 4444 5778887765443
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe-------ccCCCeeEEEE
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCF 284 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~ 284 (498)
........... -....|.++....+|. |..|+..| +.++... .. ...+. .....|.++.-
T Consensus 265 ~~~~~~~~~~~---------l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~ 331 (758)
T 3ott_A 265 HIIHDSRNIQS---------LTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFR 331 (758)
T ss_dssp EECCCTTCTTS---------CSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEE
T ss_pred EEEcCCCCcCc---------CCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEE
Confidence 22111100000 0122589998888886 66677667 5554332 21 11221 11245777776
Q ss_pred eCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 285 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 285 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
. .++.+. .|+.+| +..++..... ......+. .....|.++.-..+|++.+ |+ ++-|..||..+
T Consensus 332 D-~~g~lW-iGt~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~ 401 (758)
T 3ott_A 332 D-SKGFYW-FGGANG-LIRFTDPAGE--RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT 401 (758)
T ss_dssp C-TTCCEE-EEETTE-EEEESCTTSS--CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTT
T ss_pred c-CCCCEE-EeeCCc-ceeecccccc--cceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC
Confidence 3 556554 445555 5566643110 01111111 0124588888888887555 44 45688999875
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.65 E-value=1.2 Score=45.35 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=84.6
Q ss_pred EEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCC--eEEEEECCCCc
Q 010883 138 QFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGT 209 (498)
Q Consensus 138 ~~s~dg~~la~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~--~i~iwd~~~~~ 209 (498)
.+..++++++.|+.+ ..+.+||..++. .............- +++...++++++.|+.++ .+.+||..+..
T Consensus 447 ~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~-W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 447 TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE-WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp EETTTTEEEEECCBSSTTCBCCCCEEEETTTTE-EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred EEccCCEEEEEcCCCCCCCccccEEEEeCCCCc-EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 333377888888754 357899988762 22211111111111 222324788888887654 69999999887
Q ss_pred eeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeC--C-----CeEEEEECCCCee-----eEEEec--
Q 010883 210 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS--D-----DCIYVYDLEANKL-----SLRILA-- 274 (498)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~--d-----g~i~vwd~~~~~~-----~~~~~~-- 274 (498)
........... ....+| .++.+..+ ++.++.|+. + ..+.+||+.+.+. ...+..
T Consensus 525 W~~~~~~g~~p-------~~r~~~----~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p 593 (695)
T 2zwa_A 525 FKDVTPKDEFF-------QNSLVS----AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP 593 (695)
T ss_dssp EEECCCSSGGG-------GSCCBS----CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG
T ss_pred eEEccCCCCCC-------Ccccce----eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC
Confidence 65543311100 001112 23445554 667777765 2 4689999988772 122211
Q ss_pred -cCCCeeEEEEeCCCCCEEEEeeC--------CCeEEEEcCc
Q 010883 275 -HTSDVNTVCFGDESGHLIYSGSD--------DNLCKVWDRR 307 (498)
Q Consensus 275 -~~~~v~~~~~~~~~~~~l~s~s~--------dg~i~vwd~~ 307 (498)
....-.+++.. .++.+++.|+. ...|.+||+.
T Consensus 594 ~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 594 LFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp GGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred CCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 11111223332 33677777774 3468899986
No 347
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.01 E-value=5.3 Score=36.51 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=41.0
Q ss_pred CCeeEEEEeCC------CCCEEEEeeCCCeEEEEcCccccCCCceeE--Ee-ccccccEEEEEEcCCCCEEEEEe-CCCc
Q 010883 277 SDVNTVCFGDE------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VL-MGHLEGITFIDSRGDGRYLISNG-KDQA 346 (498)
Q Consensus 277 ~~v~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~-~~~~~~v~~l~~~~~~~~l~s~~-~dg~ 346 (498)
..+..++|... ++.++++.-..+.|...++. .+.... .+ ......+..+++.|||.++++.. .+|.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN----GDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE----TTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC----CCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 35677777521 36677776677788887775 222221 12 22335789999999998666533 3443
Q ss_pred E
Q 010883 347 I 347 (498)
Q Consensus 347 i 347 (498)
|
T Consensus 347 I 347 (353)
T 2g8s_A 347 L 347 (353)
T ss_dssp E
T ss_pred E
Confidence 3
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.34 E-value=8.5 Score=33.80 Aligned_cols=183 Identities=13% Similarity=0.023 Sum_probs=95.2
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 212 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~ 212 (498)
.|..++...+-..++ . ||.|..|-......+.. .......|..++...+- .+.-. +|.|..|-....-...
T Consensus 64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~---P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV---PAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC---CGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC---CcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC
Confidence 566666654433333 4 88898887654211111 11112357777664433 33334 8999999765422211
Q ss_pred cccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEE
Q 010883 213 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 292 (498)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 292 (498)
.... ....|..++...+. .++-. ||.|+.|-......+..-......|..++.. ....+
T Consensus 135 ~~~~----------------~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~ 193 (282)
T 3qhy_B 135 VPAE----------------AQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSL 193 (282)
T ss_dssp CCGG----------------GGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred CCcc----------------CCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEE
Confidence 1100 01146666654333 33334 7999999765432211111223567777764 33344
Q ss_pred EEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 293 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 293 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+. .||.|..|-.......+.+. .....|..++...... ++. . ||.|..|-...
T Consensus 194 al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 194 AL--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EE--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred EE--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 44 59999999765222122121 1234577777654433 333 3 99999997655
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.68 E-value=2.3 Score=41.10 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCeEEEEEC-CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 179 VTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 179 v~~~~~sp~~~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
...+.++|||+++++++. +.++.++++..-......++......+.-.. .-.-.....+|.++|....+..-|..
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~----e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP----ELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC----BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec----cCCCcccEEEECCCCceEeeeeecce
Confidence 456788999999998775 7899999987421100000000000000000 01115778999999965566668999
Q ss_pred EEEEECCCC----------eeeEEEeccCCCeeEEEE----eCCCCCEEEEeeC
Q 010883 258 IYVYDLEAN----------KLSLRILAHTSDVNTVCF----GDESGHLIYSGSD 297 (498)
Q Consensus 258 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~----~~~~~~~l~s~s~ 297 (498)
|.-|++... ..+.++.-|-.+-...+- ..+++++|++...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 999999653 345556555443222221 1367888888753
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.58 E-value=5.3 Score=38.06 Aligned_cols=118 Identities=14% Similarity=0.017 Sum_probs=60.5
Q ss_pred ceEEEEEcCCCC-EEEEEECCCeEEEEECCCCe---EEEEEe--ecC----CCceeEEEEEeCCC----CCeEEEEEC--
Q 010883 133 RAYVSQFSADGS-LFVAGFQASQIRIYDVERGW---KIQKDI--LAK----SLRWTVTDTSLSPD----QRHLVYASM-- 196 (498)
Q Consensus 133 ~v~~~~~s~dg~-~la~~~~dg~i~vw~~~~~~---~~~~~~--~~~----~~~~~v~~~~~sp~----~~~l~~~s~-- 196 (498)
.-+.|+|.|||. .|+++...|.|++++..... .+..+. ... ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 346899999996 45556688999999754321 111110 111 11346889999996 443333221
Q ss_pred C----------CeEEEEECCCCc--eeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCC
Q 010883 197 S----------PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 256 (498)
Q Consensus 197 d----------~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg 256 (498)
+ ..|.-|.+..+. .......... +... .....| ....|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i---~~~~-~~~~~H--~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVF---LEVA-ELHRKH--LGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEE---EEEE-ESSSSS--CEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEE---EEcC-CCCCcc--cCCcEeECCCCcEEEEeCCCC
Confidence 1 144446654321 0000000000 0011 011235 357899999998766665543
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.73 E-value=16 Score=32.06 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=75.4
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCe
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 257 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~ 257 (498)
.|..++.... +.+.-. ||.|..|-....-...... . ....|..++..... .++. . ||.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~---~-------------~~~~i~~ia~G~~h-s~~l-~-~G~ 82 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPA---A-------------TQSGVDAIAAGNYH-SLAL-K-DGE 82 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCG---G-------------GGSCCCEEEECSSE-EEEE-E-TTE
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCc---c-------------CCCCEEEEEeCCCE-EEEE-E-CCE
Confidence 4666665433 222234 8999999765432211111 0 01146666655333 2333 4 899
Q ss_pred EEEEECCCCeeeEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEeccccccEEEEEEcCCCCE
Q 010883 258 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 337 (498)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 337 (498)
|+.|-....-.+-.-..-...|..++.. . ...+.-. ||.|+.|-.......+ ........|..++...+.
T Consensus 83 v~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~--~hs~al~-~G~v~~wG~n~~gqlg----~~~~~~~~i~~i~~G~~~-- 152 (282)
T 3qhy_B 83 VIAWGGNEDGQTTVPAEARSGVDAIAAG-A--WASYALK-DGKVIAWGDDSDGQTT----VPAEAQSGVTALDGGVYT-- 152 (282)
T ss_dssp EEEEECCTTSTTCCCGGGSSSEEEEEEE-T--TEEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSSE--
T ss_pred EEEeeCCCCCCCCCCcccCCCeEEEECc-C--CEEEEEe-CCeEEEecCCCCCcCC----CCccCCCCeEEEEcccCE--
Confidence 9999765432211111123467777775 2 2333445 9999999765221111 111233567777765432
Q ss_pred EEEEeCCCcEEEEeCCC
Q 010883 338 LISNGKDQAIKLWDIRK 354 (498)
Q Consensus 338 l~s~~~dg~i~iwd~~~ 354 (498)
.+.-. ||.|..|-...
T Consensus 153 ~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 153 ALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp EEEEE-TTEEEEEECCT
T ss_pred EEEEE-CCEEEEecCCC
Confidence 33333 79999998765
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.26 E-value=25 Score=31.52 Aligned_cols=209 Identities=10% Similarity=0.033 Sum_probs=112.3
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEE---ECCC------CeEEEEEeecCCCceeEEEE-EeCC--CCCeEEEEECCCeE
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIY---DVER------GWKIQKDILAKSLRWTVTDT-SLSP--DQRHLVYASMSPIV 200 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw---~~~~------~~~~~~~~~~~~~~~~v~~~-~~sp--~~~~l~~~s~d~~i 200 (498)
.+..+........|+.-+..|.++-. ++.. |..+...+.... ...|..+ ...+ +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 34444444444555555667765443 3332 222211222222 2345544 3432 57899999999999
Q ss_pred EEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCe---------ee
Q 010883 201 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANK---------LS 269 (498)
Q Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~--~~~---------~~ 269 (498)
+.-.+..-....... ...+.+. . ...+..+........|+..+..|.+..+... .-. ..
T Consensus 122 Kr~~l~~~~~~~r~G----~~~i~lk-----e-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~ 191 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGG----IVAVNLR-----D-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 191 (327)
T ss_dssp EEEEGGGGCCCCSSC----EESCBCC-----T-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred EEeEHHHhhccccCc----eEEEEEC-----C-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeee
Confidence 998875432211100 0000010 0 1245555555566678888999999888776 211 11
Q ss_pred EEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC-----CceeEEeccccccEEEEEEcCCCCEEEEEeCC
Q 010883 270 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 344 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 344 (498)
..+ .....|.++... ..+..++..+..|.++.-.+...... +.....+....+.+..+....+...++..+.+
T Consensus 192 i~L-~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 192 MRF-NIDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp SCC-CTTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred ecC-CCCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 112 234556666665 44568889999999998876533211 11112222213345555444455567777888
Q ss_pred CcEEEEeCCC
Q 010883 345 QAIKLWDIRK 354 (498)
Q Consensus 345 g~i~iwd~~~ 354 (498)
|.+..++...
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 8888887655
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.40 E-value=30 Score=31.81 Aligned_cols=166 Identities=8% Similarity=-0.016 Sum_probs=76.8
Q ss_pred CCceEEEEEcC--CCCEEEEEECCC----eEEEEECCCCeEEEEEeec---C-C-------CceeEEEEEeCCC--CCeE
Q 010883 131 TSRAYVSQFSA--DGSLFVAGFQAS----QIRIYDVERGWKIQKDILA---K-S-------LRWTVTDTSLSPD--QRHL 191 (498)
Q Consensus 131 ~~~v~~~~~s~--dg~~la~~~~dg----~i~vw~~~~~~~~~~~~~~---~-~-------~~~~v~~~~~sp~--~~~l 191 (498)
...|.+++++| ++.+.|.+ ..| .|... .+.+......... . . ....|.++++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 45799999999 55555544 344 33332 2333322222111 0 0 1125888999872 4556
Q ss_pred EEEECCCeEEEEECCCCceeccccccccccCcccccc--CCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee
Q 010883 192 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL 268 (498)
Q Consensus 192 ~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~ 268 (498)
.++...+.|...+-...................+... ........+.+|.+.|. ...|+++..++.|+..+- .++.
T Consensus 132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 6666566555443222222221111000000000000 00011235889999883 344566655555554432 2222
Q ss_pred eEEEec-----c--------CCCeeEEEEeCCCCCEEEEeeCCC
Q 010883 269 SLRILA-----H--------TSDVNTVCFGDESGHLIYSGSDDN 299 (498)
Q Consensus 269 ~~~~~~-----~--------~~~v~~~~~~~~~~~~l~s~s~dg 299 (498)
-..+.. + ...+.++.+.|.++..|+.+...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 222211 0 124788998755567777777655
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.11 E-value=31 Score=31.74 Aligned_cols=191 Identities=11% Similarity=0.022 Sum_probs=87.5
Q ss_pred CEEEEEECCCeEEEEECCC-CeEEEEEeecCCCceeEEEEEeCC-CCCeEEEEECCC----eEEEEECCCCceecccccc
Q 010883 144 SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSP----IVHIVDVGSGTMESLANVT 217 (498)
Q Consensus 144 ~~la~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~s~d~----~i~iwd~~~~~~~~~~~~~ 217 (498)
..|.+|+..| +.+++... +......... .....|.+|++.| +...|.++...+ .|... .+.++.-......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 3566777776 55555432 2222221111 1233799999998 334444444444 34332 2233221111110
Q ss_pred ccccCccccccCCCC----ceecEEEEEEcC-C-CCEEEEEeCCCeEEEEECCCCeeeEEEec-----------------
Q 010883 218 EIHDGLDFSAADDGG----YSFGIFSLKFST-D-GRELVAGSSDDCIYVYDLEANKLSLRILA----------------- 274 (498)
Q Consensus 218 ~~~~~~~~~~~~~~~----h~~~i~~~~~s~-~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~----------------- 274 (498)
..+... ... ....|.++++.| + ...|.++...+.|+..+-. ++.-..+..
T Consensus 100 -----~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g 172 (394)
T 3b7f_A 100 -----PAFNKA-PEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDG 172 (394)
T ss_dssp -----CCCCCC-C----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC---
T ss_pred -----ccCCCc-ccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccC
Confidence 000000 000 112588899987 2 4456666666666655432 222222211
Q ss_pred --cCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEecc-----c--------cccEEEEEEcCC-CCEE
Q 010883 275 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-----H--------LEGITFIDSRGD-GRYL 338 (498)
Q Consensus 275 --~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~--------~~~v~~l~~~~~-~~~l 338 (498)
....+.+|.+.|.+...|+.+..++.|...+- .++.-..+.. + ...+.++.+.|+ ...|
T Consensus 173 ~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-----gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l 247 (394)
T 3b7f_A 173 TPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-----AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL 247 (394)
T ss_dssp -CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-----TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred CCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-----CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence 12357788887544455555554454444321 1111111110 0 134888999885 3566
Q ss_pred EEEeCCCcEEEE
Q 010883 339 ISNGKDQAIKLW 350 (498)
Q Consensus 339 ~s~~~dg~i~iw 350 (498)
+.+...+ |...
T Consensus 248 ~vg~~~g-l~~s 258 (394)
T 3b7f_A 248 YQQNHCG-IYRM 258 (394)
T ss_dssp EEEETTE-EEEE
T ss_pred EEEcCCe-EEEe
Confidence 6666544 4443
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=79.95 E-value=37 Score=31.19 Aligned_cols=206 Identities=14% Similarity=0.202 Sum_probs=112.0
Q ss_pred CCceEEEEEcCCCCEEEE--EEC-------------CCeEEEEECCCC--eEEEEEeecCC---CceeEEEEEeC---CC
Q 010883 131 TSRAYVSQFSADGSLFVA--GFQ-------------ASQIRIYDVERG--WKIQKDILAKS---LRWTVTDTSLS---PD 187 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~--~~~-------------dg~i~vw~~~~~--~~~~~~~~~~~---~~~~v~~~~~s---p~ 187 (498)
--.|+.+...+++++-+. |-. .-.|.+||+.++ +.++....... ....+..+++. |+
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 446888888888775543 211 125889999998 77776654321 23357778776 32
Q ss_pred ----CCeEEEEE-CCCeEEEEECCCCceecccccccccc-CccccccCCCCc----eecEEEEEEcCC----CCEEEEEe
Q 010883 188 ----QRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGY----SFGIFSLKFSTD----GRELVAGS 253 (498)
Q Consensus 188 ----~~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h----~~~i~~~~~s~~----g~~l~~g~ 253 (498)
+.+...+. ..+-|.|+|+.+++..+........+ ...+.. .|. ...+..|+++|+ ++.|....
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i---~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDY---GGKEYEFKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEE---TTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEE---CCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence 23333333 35689999999988765543111111 000100 122 237999999998 77777776
Q ss_pred CCCeEEEEECC-----CC---eeeEEEeccCC---CeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEec--
Q 010883 254 SDDCIYVYDLE-----AN---KLSLRILAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-- 320 (498)
Q Consensus 254 ~dg~i~vwd~~-----~~---~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-- 320 (498)
..+ -++|.+. .. ..+..+ +..+ .-..+++.+.++.++++--....|..|+.............+.
T Consensus 243 lss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d 320 (381)
T 3q6k_A 243 GSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS 320 (381)
T ss_dssp SSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC
T ss_pred CCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC
Confidence 554 2333332 11 112222 3332 3334455336677787878889999999852000001112221
Q ss_pred cccccEEEEEEcCCCCEEEEE
Q 010883 321 GHLEGITFIDSRGDGRYLISN 341 (498)
Q Consensus 321 ~~~~~v~~l~~~~~~~~l~s~ 341 (498)
..-..+..+.+.++|.+.+..
T Consensus 321 ~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 321 SRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTCCSEEEEEECTTSCEEEEE
T ss_pred CCccccCeEEECCCCeEEEEE
Confidence 122245667666666544444
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.72 E-value=46 Score=31.59 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=60.0
Q ss_pred eEEEEEeCCCCC-eEEEEECCCeEEEEECCCCce-eccccccccccCccccccCCCCceecEEEEEEcCC----CCEEEE
Q 010883 178 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVA 251 (498)
Q Consensus 178 ~v~~~~~sp~~~-~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----g~~l~~ 251 (498)
....|+|.|++. .|+++...|.|++++...... ..+..+.... ......+.......|+|+|+ +.+.++
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~-----~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLV-----QSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTB-----CCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCccee-----ccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 467899999996 566677889999997543211 1111111100 00000011336889999996 443333
Q ss_pred EeC--C----------CeEEEEECCC----------CeeeEEEe--ccCCCeeEEEEeCCCCCEEEEeeCC
Q 010883 252 GSS--D----------DCIYVYDLEA----------NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDD 298 (498)
Q Consensus 252 g~~--d----------g~i~vwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~d 298 (498)
-+. + ..|.-|.+.. .+.+..+. ...-....|+|. +++.+.++.+..
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-pDG~LYv~~Gd~ 159 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-PDGFLYIILGDG 159 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-TTSCEEEEECCT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-CCCcEEEEeCCC
Confidence 222 1 1344466542 12333332 111235789997 678776665543
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=77.79 E-value=38 Score=30.12 Aligned_cols=205 Identities=10% Similarity=0.021 Sum_probs=110.5
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEE------EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECCCCceec-c
Q 010883 141 ADGSLFVAGFQASQIRIYDVERGWKI------QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-L 213 (498)
Q Consensus 141 ~dg~~la~~~~dg~i~vw~~~~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~-~ 213 (498)
++..++++.+.+|.|+--.+..-... ..-...... ..+..+........++..+..|.++-.....-.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46678889999999988765431100 000111222 234444444455567777778877666543100000 0
Q ss_pred ccccccccCccccccCCCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCC-------CeeeEEEeccCCCeeEEE
Q 010883 214 ANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVC 283 (498)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~---~g~~l~~g~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~ 283 (498)
..-......+.+.. ...|.++...+ +..+|+..+.+|.++...+.. +.....+.. .+.+..+.
T Consensus 85 ~~G~~i~~~l~l~~------~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 85 SKGQNISELINLGD------QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp ---CBGGGTSCCCT------TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CCCcChhhccCCCC------CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 00000000111111 11355544333 466788999999999887743 222222322 45666666
Q ss_pred EeCCCCCEEEEeeCCCeEEEEcCccccC-----CCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 284 FGDESGHLIYSGSDDNLCKVWDRRCLNV-----KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 284 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
.. ..+..++..+.+|.+..+....... .+.....+.. .+.|..+....++..+++.+..|..+..++...
T Consensus 158 ~~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 158 IV-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred Ee-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 65 4456788888999998887653211 2222233332 345666655555667888899999999888653
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.41 E-value=18 Score=38.09 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 170 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~ 170 (498)
...|.+++..++..++++-+.|+++|||++.++..+....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3467888888999999999999999999999997776543
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.41 E-value=22 Score=37.47 Aligned_cols=38 Identities=32% Similarity=0.210 Sum_probs=33.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEe
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 273 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 273 (498)
.+.+++..++..++++-+.|+.+++|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 57788888888999999999999999999999887653
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=71.64 E-value=89 Score=31.56 Aligned_cols=204 Identities=10% Similarity=0.009 Sum_probs=97.7
Q ss_pred ceEEEE-EcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeecCCCc-----eeEEEEEeCCCCCeEEEE-------
Q 010883 133 RAYVSQ-FSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPDQRHLVYA------- 194 (498)
Q Consensus 133 ~v~~~~-~s~dg~~la~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~------- 194 (498)
....+. ++||+++++.+-. -..|+++|+.+++.+...+...... .....++|..+...+++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 344455 8999998876432 2369999999985443211100000 011234676333333321
Q ss_pred ---ECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCE-----EEEEe---CCCeEEEEEC
Q 010883 195 ---SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-----LVAGS---SDDCIYVYDL 263 (498)
Q Consensus 195 ---s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~-----l~~g~---~dg~i~vwd~ 263 (498)
+....|+.|.+.+.............. . --.....++++++ +++.+ ....+++.+.
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~------------~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 276 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKE------------Y-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDT 276 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTT------------S-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEEC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCC------------c-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcC
Confidence 112468888877653322111111110 0 1233455666652 34333 2245677776
Q ss_pred CC--CeeeEEEeccCCCeeEEEEeCCCCCEEEEe----------eCCCeEEEEcCccccCC---CceeEE-ec-cccccE
Q 010883 264 EA--NKLSLRILAHTSDVNTVCFGDESGHLIYSG----------SDDNLCKVWDRRCLNVK---GKPAGV-LM-GHLEGI 326 (498)
Q Consensus 264 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~~~---~~~~~~-~~-~~~~~v 326 (498)
.. ++. ..+.... .. .+..+ .++.+++.. ...+.|...|+...... ...... +. .....+
T Consensus 277 ~~~~~~~-~~l~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (711)
T 4hvt_A 277 KYKNLKL-QKINMPS-DA-TLQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVF 352 (711)
T ss_dssp SSSSCEE-EECCSCT-TC-EEEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEE
T ss_pred CCCCCcc-eEeecCC-cc-eEeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeE
Confidence 53 332 2232111 11 12222 344444432 24567888888643210 111222 22 233457
Q ss_pred EEEEEcCCCCEEEEEeCCCc--EEEEeCCC
Q 010883 327 TFIDSRGDGRYLISNGKDQA--IKLWDIRK 354 (498)
Q Consensus 327 ~~l~~~~~~~~l~s~~~dg~--i~iwd~~~ 354 (498)
..+.+..+ .++++...++. |.++|+.+
T Consensus 353 ~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~ 381 (711)
T 4hvt_A 353 NFISTTKD-RVFLATYDNVVAKVVTFTLEN 381 (711)
T ss_dssp EEEEECSS-CEEEEEEETTEEEEEEECEET
T ss_pred EEEEEECC-EEEEEEEECCEEEEEEEECCC
Confidence 78888865 56666666764 66676544
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=66.54 E-value=72 Score=28.48 Aligned_cols=155 Identities=6% Similarity=-0.022 Sum_probs=87.3
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 010883 186 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 264 (498)
Q Consensus 186 p~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~- 264 (498)
|+..++++.+.+|.|+--.+..-+..... ...+ .-.+.+..+........|+..+..|.++-+...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-------~~~l------ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~e 69 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ-------DFAM------KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHE 69 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC-------CCCC------CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc-------cccc------CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHH
Confidence 56778889999999987664321110000 0000 011145455555556678888888987766542
Q ss_pred --------CCeeeEEEe--ccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccCC----CceeEEeccccccEEE
Q 010883 265 --------ANKLSLRIL--AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVK----GKPAGVLMGHLEGITF 328 (498)
Q Consensus 265 --------~~~~~~~~~--~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~v~~ 328 (498)
.|.++..+. .....|..+...+. ++.+++..+.+|.++...+...... +.....+... +.+..
T Consensus 70 lp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~ 148 (323)
T 1wp5_A 70 LPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVD 148 (323)
T ss_dssp SCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEE
T ss_pred CcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEE
Confidence 122211111 12334555433322 2567889999999999887644321 2222223322 45555
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+........|+..+.+|.+..+....
T Consensus 149 ~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 149 VHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 55544556788888999988888765
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=64.61 E-value=86 Score=28.72 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=66.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------eeeEEEecc-CCCeeEEEEeCCCCCEEEEeeCCCeEEE
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-----------KLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKV 303 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~v 303 (498)
.+..++.+....+.++...+|.|+.|-.... .....+... ...|..++.. ....++-..+|.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEE
Confidence 3455666666667777788999999965321 011112111 1256666653 445566678999999
Q ss_pred EcCccccC------CCc-eeEEec-cccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 304 WDRRCLNV------KGK-PAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 304 wd~~~~~~------~~~-~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
|-...... ... ....+. .....|..++......+.+....||.|..|-...
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 96532110 000 111111 1223577777654345677778899999998654
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.58 E-value=71 Score=32.11 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=29.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEEec
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 274 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 274 (498)
.|.++.+ +..++++-+.|..+++|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666555 367999999999999999999998776543
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=61.83 E-value=1e+02 Score=31.03 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=30.0
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceeccccc
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 216 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 216 (498)
.|.++.+ +..++++-+.|.++|+|++.++++......
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 478999999999999999999987766655
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=61.53 E-value=87 Score=27.73 Aligned_cols=159 Identities=8% Similarity=0.056 Sum_probs=88.0
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 010883 186 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 265 (498)
Q Consensus 186 p~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 265 (498)
|+..++++.+.+|.|+--.+..-+...... .....+.+ . -.+.+..+........++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~--~g~~~~~l-----k-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ 77 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGG--KGLSSFDL-----N-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYE 77 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSC--CCEECCCC-----C-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCC--CCceeccc-----C-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH
Confidence 566788899999999987664322111000 00000000 0 111345555555566788888899887776532
Q ss_pred ---C------ee---eEEEeccCCCeeEEEEeCC--CCCEEEEeeCCCeEEEEcCccccC---CCceeEEeccccccEEE
Q 010883 266 ---N------KL---SLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITF 328 (498)
Q Consensus 266 ---~------~~---~~~~~~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~v~~ 328 (498)
. .. ...+ .....|..+...+. +...|+..+..|.++...+..... .+.....+.. .+.+..
T Consensus 78 ip~~~r~~~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~ 155 (312)
T 1suu_A 78 IKDSSRASKGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTS 155 (312)
T ss_dssp SCC-------CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEE
T ss_pred CCCCCccCCCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEE
Confidence 1 11 0111 12234555443321 466788889999999988764321 2333333433 445555
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+....+...++..+.+|.+..+....
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 55555566788889999999888765
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=59.78 E-value=87 Score=27.15 Aligned_cols=205 Identities=7% Similarity=-0.012 Sum_probs=114.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEE---EECCCCeEEEEEeecCCCceeEEEEEeCC--CCCeEEEEECCCeEEEEEC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRI---YDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDV 205 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~v---w~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~s~d~~i~iwd~ 205 (498)
.+.+..+.......+|+.-+..|.++- |++..+.... + .. ....|..+.. + +..+++..+.+|.++...+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--l-l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--L-KS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--C-SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--c-CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEH
Confidence 445555554444455666667776543 3443331111 2 22 2335666644 4 5678999999999999887
Q ss_pred CCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CeeeEEEeccC
Q 010883 206 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRILAHT 276 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~---------~~~~~~~~~~~ 276 (498)
..-. .... ....+.+. -.+.+..+........++..+..|.++.+.... |.....+ ...
T Consensus 98 ~~~~-~~~~----G~~~i~lk------egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~ 165 (276)
T 3no0_A 98 AEFE-YKAQ----GMPIIKLT------EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKN 165 (276)
T ss_dssp GGTT-TCST----TEECSCCC------TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTT
T ss_pred HHhh-hhcC----CeEEEecC------CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCC
Confidence 5432 1100 00011111 112455565555666888999999988887532 1111122 223
Q ss_pred CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCC---CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEE--Ee
Q 010883 277 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK---GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL--WD 351 (498)
Q Consensus 277 ~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~i--wd 351 (498)
..|..+... .++..++..+..|.++...+...... ++-+..+ ...+.+..+....+...++..+.+|.+.. ++
T Consensus 166 d~vv~~~~~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 166 DETSGLRIW-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp CCEEEEEEE-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred CEEEEEEEe-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 456665554 44568888899999998877533221 2222333 23344555444334456777788888887 87
Q ss_pred CCC
Q 010883 352 IRK 354 (498)
Q Consensus 352 ~~~ 354 (498)
...
T Consensus 244 ~~~ 246 (276)
T 3no0_A 244 QKD 246 (276)
T ss_dssp GGG
T ss_pred HHH
Confidence 655
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.15 E-value=42 Score=32.94 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=37.9
Q ss_pred EEEEEcCCCCEEEEEECC------------CeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEE
Q 010883 135 YVSQFSADGSLFVAGFQA------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 194 (498)
Q Consensus 135 ~~~~~s~dg~~la~~~~d------------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 194 (498)
=-|+|+|+|++++.-..+ ..+.+.+..+++. ..+.. ......++.++|+||++.|.+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~-~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMV-GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEE-CCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEe-CCCCccCcCeeECCCCCEEEEE
Confidence 447899999966653221 2355666666643 33332 2345589999999999988765
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.30 E-value=1.1e+02 Score=27.29 Aligned_cols=168 Identities=11% Similarity=0.072 Sum_probs=91.8
Q ss_pred CceEEE-EEcC--CCCEEEEEECCCeEEEEECCCCeEE----EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEE
Q 010883 132 SRAYVS-QFSA--DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 204 (498)
Q Consensus 132 ~~v~~~-~~s~--dg~~la~~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd 204 (498)
..|..+ .+.. +..++++.+.+|.|+--.+..-... ........ ...+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 444444 4442 5789999999999998876531000 11111222 22455555545556788888899888887
Q ss_pred CCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-------eE--EEecc
Q 010883 205 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-------SL--RILAH 275 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-------~~--~~~~~ 275 (498)
+...+.............+.+. ....|.++...+++..|+..+..|.++.-.+..-.. +. .+..-
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~------~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN------IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC------TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred CcccccCcCCcCCCCeeeecCC------CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 7621111111000001111111 122577777666677899999999998887643211 11 12121
Q ss_pred CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCc
Q 010883 276 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 307 (498)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 307 (498)
.+.+..+... .+...++..+.+|.+.-++..
T Consensus 248 ~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIV-DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence 3445555544 344556667777877777654
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=56.28 E-value=1.1e+02 Score=27.08 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=124.2
Q ss_pred CCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 010883 186 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 264 (498)
Q Consensus 186 p~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~- 264 (498)
|+..++++.+.+|.|+--.+..-+...... .....+.+ ...+.+..+........|+..+..|.++-+...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~--~g~~~~~~------ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~e 72 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGG--KGKSAARI------KEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 72 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCC--CCceeeee------CCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhH
Confidence 456678889999999877765422211100 00000000 011134444444456678888888887766542
Q ss_pred --C------CeeeE---EEeccCCCeeEEEEeC--CCCCEEEEeeCCCeEEEEcCccccC---CCceeEEeccccccEEE
Q 010883 265 --A------NKLSL---RILAHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITF 328 (498)
Q Consensus 265 --~------~~~~~---~~~~~~~~v~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~v~~ 328 (498)
. |.++. .+ .....|..+...+ .++.+++..+..|.++-..+..... .+.....+..+ +.+..
T Consensus 73 lp~~~~~a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~ 150 (307)
T 1zi0_A 73 LPEATRGARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIG 150 (307)
T ss_dssp SCCCCSSSCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEE
T ss_pred CcCCCCCCCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEE
Confidence 2 22111 12 2234455554321 3456788999999999987753322 12222233333 45555
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCCceEEEEccCceeEEEEEEE
Q 010883 329 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 408 (498)
Q Consensus 329 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (498)
+....+...++..+.+|.+..++............ +.....+..... +..+.
T Consensus 151 ~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-------------------------Gv~~i~L~~~d~---Vv~~~ 202 (307)
T 1zi0_A 151 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-------------------------GVRGIRLGEGDK---VVSLI 202 (307)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-------------------------CEECCCCCTTCC---EEEEE
T ss_pred EEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-------------------------CeEeEEeCCCCE---EEEEE
Confidence 54444556788888889888887654321111000 000011111111 11111
Q ss_pred eccccCCCCcEEEEEecCCeEEEEECCCC-------cEEEE--eccCCCCeeeeEEcCCCCeEEEEeCCCcEEEecCCC
Q 010883 409 FSPVYSTGQKYIYTGSHDSCVYVYDLVSG-------EQVAA--LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 478 (498)
Q Consensus 409 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-------~~~~~--~~~h~~~v~~l~~sp~~~~l~s~~~Dg~i~iw~~~~ 478 (498)
.. +++..|++.+..|.++-.++..- +-+.. +..-.+.+..+....+...|+..+.+|.+....+..
T Consensus 203 ---~~-~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 203 ---VP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ---CC-CSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred ---Ee-cCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11 13456888889998888876321 11222 222234555544433445566666778777666654
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=55.79 E-value=1.2e+02 Score=27.61 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=90.2
Q ss_pred eCCCCCeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 010883 184 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 263 (498)
Q Consensus 184 ~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~ 263 (498)
+-|+..++++.+.+|.|+--.+..-+...... .......+ .....+..+........|+..+..|.++-+..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g--~g~~~~~l------ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGG--RGRSAAST------KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCC--CCSEEEEC------SCCCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCC--CCceeccc------CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 34778899999999999976543211100000 00000000 01224666666666677888888888776654
Q ss_pred C---C------CeeeEEEe--ccCCCeeEEEEeC--CCCCEEEEeeCCCeEEEEcCccccC---CCceeEEeccccccEE
Q 010883 264 E---A------NKLSLRIL--AHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGIT 327 (498)
Q Consensus 264 ~---~------~~~~~~~~--~~~~~v~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~v~ 327 (498)
. . |..+..+. .....|.++...+ ..+.+|+.++..|.++...+..... .+.....+.. .+.+.
T Consensus 75 ~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv 153 (370)
T 3l6v_A 75 HQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALV 153 (370)
T ss_dssp GGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEE
T ss_pred HHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEE
Confidence 2 1 22211110 2234555554332 2456899999999999988754332 2222223332 34455
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 328 FIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 328 ~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.+........|+..+.+|.+..++...
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 555445556788888899888887655
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.04 E-value=53 Score=35.45 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCCeEEEEECCCeEEEEECCCCceecccccc
Q 010883 178 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 217 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d~~i~iwd~~~~~~~~~~~~~ 217 (498)
.+.+++..++..++++-+.|++++||++.++++.....+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3445556678889999999999999999999887665543
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.89 E-value=1.1e+02 Score=26.50 Aligned_cols=207 Identities=10% Similarity=0.028 Sum_probs=109.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEE---ECCCCeeeEEEeccCCCeeEEEEeCC-CCCEEEEeeCCCeEEEEcCcccc-
Q 010883 236 GIFSLKFSTDGRELVAGSSDDCIYVY---DLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLN- 310 (498)
Q Consensus 236 ~i~~~~~s~~g~~l~~g~~dg~i~vw---d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~- 310 (498)
.+..+.......+|+.-+..|.++-. ++....... +......|..+.. +. ++..++..+.+|.++-..+....
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 45554444445567777788877654 333222111 2223455666543 22 46789999999999998876432
Q ss_pred -CCCceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCcCcccccCCCC
Q 010883 311 -VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 389 (498)
Q Consensus 311 -~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (498)
..+.....+.. .+.+..+........++..+..|.+..++............ +
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~-------------------------G 156 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGAR-------------------------G 156 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCC-------------------------C
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCC-------------------------C
Confidence 11222222332 34555555555566888889999988887654322110000 0
Q ss_pred ceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEEEEECCC-------CcEEEEeccCCCCeeeeEEcCCCCeE
Q 010883 390 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-------GEQVAALKYHTSPVRDCSWHPSQPML 462 (498)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~l 462 (498)
.....+..... +..+... +++..++..+..|.++...+.. ++-+..+ ...+.+..+....+...+
T Consensus 157 v~~i~L~~~d~---vv~~~~~----~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i 228 (276)
T 3no0_A 157 VQGIKLEKNDE---TSGLRIW----NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVEL 228 (276)
T ss_dssp EECCCCCTTCC---EEEEEEE----SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEE
T ss_pred EEEEccCCCCE---EEEEEEe----CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEE
Confidence 01111111111 1111111 1356788889999988887642 2223333 233455555443344466
Q ss_pred EEEeCCCcEEE--ecCCC
Q 010883 463 VSSSWDGDVVR--WEFPG 478 (498)
Q Consensus 463 ~s~~~Dg~i~i--w~~~~ 478 (498)
+..+.+|.+.. ++...
T Consensus 229 ~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 229 LITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEEEGGG
T ss_pred EEEcCCCeEEEeeeCHHH
Confidence 77778888877 76543
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.22 E-value=15 Score=39.62 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 010883 132 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 170 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~~~~~~~~ 170 (498)
..|.+++..++..++++-+.|+++|||++.++..+....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 355666778888999999999999999999997766543
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=51.42 E-value=1.3e+02 Score=26.72 Aligned_cols=202 Identities=8% Similarity=-0.019 Sum_probs=104.9
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEE-EEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC---CCceeccccc
Q 010883 141 ADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG---SGTMESLANV 216 (498)
Q Consensus 141 ~dg~~la~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~---~~~~~~~~~~ 216 (498)
|+..++++.+.+|.|+--.+..-... ..-...... ..+..+........|+..+..|.+.-+... ...... .-
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a--~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD--LG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS--CC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCC--CC
Confidence 56677888999999887654310000 000111222 234444444455667777777876555442 111000 00
Q ss_pred cccccCccccccCCCCceecEEEEEEcC---CCCEEEEEeCCCeEEEEECCC--------CeeeEEEeccCCCeeEEEEe
Q 010883 217 TEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA--------NKLSLRILAHTSDVNTVCFG 285 (498)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~---~g~~l~~g~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~~ 285 (498)
......+.+. ....|.++...+ ++.+++..+.+|.++...+.. +.....+.. .+.+..+...
T Consensus 80 ~~i~~~i~L~------~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~ 152 (323)
T 1wp5_A 80 QHIANIIPID------RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLT 152 (323)
T ss_dssp EEGGGTSCCC------TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEE
T ss_pred cChhhccCCC------CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEe
Confidence 0000111111 111455543333 266899999999999987742 222122322 2556565555
Q ss_pred CCCCCEEEEeeCCCeEEEEcCccccC-----CCceeEEeccccccEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 010883 286 DESGHLIYSGSDDNLCKVWDRRCLNV-----KGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 286 ~~~~~~l~s~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~ 354 (498)
.....++..+.+|.+..+....... .+.....+. ..+.|.++...+++. .|++.+..|..+..++..
T Consensus 153 -~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 153 -DGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp -CSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred -CCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 3455677888899988887642211 122222222 234566665444444 788888888888877765
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.28 E-value=42 Score=32.97 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=39.1
Q ss_pred eEEEEEeCCCCCeEEEEECC------------CeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCC
Q 010883 178 TVTDTSLSPDQRHLVYASMS------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 245 (498)
Q Consensus 178 ~v~~~~~sp~~~~l~~~s~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~ 245 (498)
..-.|+|+|.|++++.-..+ +.+.+.+..+++.......+. ...++.++|+||
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~---------------gaE~TG~~fspD 541 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------------GCEVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT---------------TCEEEEEEECTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC---------------CccCcCeeECCC
Confidence 45678999999966654322 235555666666554443221 237999999999
Q ss_pred CCEEEEE
Q 010883 246 GRELVAG 252 (498)
Q Consensus 246 g~~l~~g 252 (498)
++.|++.
T Consensus 542 g~tlfvn 548 (592)
T 3zwu_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9887765
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=49.40 E-value=68 Score=31.27 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCEEEEEEC------------CCeEEEEECCCCeEEEEEeecCCCceeEEEEEeCCCCCeEEEEE
Q 010883 132 SRAYVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 195 (498)
Q Consensus 132 ~~v~~~~~s~dg~~la~~~~------------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s 195 (498)
..-..|.|+++|.+.+.... ...|..++..+++. ..+.. ......++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl~-~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMV-GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEEE-CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEEe-CCCCccccCCEECCCCCEEEEEE
Confidence 34567899999987773321 12566667666643 33332 12234799999999999888764
No 377
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=49.08 E-value=1.2e+02 Score=30.22 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=45.8
Q ss_pred CCceEEEEEc----CCCC---EEEEEECCCeEE-EEECCCCeEEEEEeecCCCceeEEEEEeCCCC--CeEEEEECCCeE
Q 010883 131 TSRAYVSQFS----ADGS---LFVAGFQASQIR-IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIV 200 (498)
Q Consensus 131 ~~~v~~~~~s----~dg~---~la~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~s~d~~i 200 (498)
....+.++.. .+|+ .+..|..+|.|. +-....+..+......-....+|..+.++++. .+|.+++..+.+
T Consensus 396 ~~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~ 475 (663)
T 1olz_A 396 DVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVV 475 (663)
T ss_dssp SCCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEE
T ss_pred CCceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEE
Confidence 3345677653 4553 677899999874 33444443333322233334588899999988 888888877766
Q ss_pred EE
Q 010883 201 HI 202 (498)
Q Consensus 201 ~i 202 (498)
+|
T Consensus 476 ~v 477 (663)
T 1olz_A 476 QA 477 (663)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.36 E-value=1.6e+02 Score=26.81 Aligned_cols=212 Identities=10% Similarity=0.013 Sum_probs=110.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEEC---C------CCeEEEEEeecCCCceeEEEEE-eC--CCCCeEEEEECCC
Q 010883 131 TSRAYVSQFSADGSLFVAGFQASQIRIYDV---E------RGWKIQKDILAKSLRWTVTDTS-LS--PDQRHLVYASMSP 198 (498)
Q Consensus 131 ~~~v~~~~~s~dg~~la~~~~dg~i~vw~~---~------~~~~~~~~~~~~~~~~~v~~~~-~s--p~~~~l~~~s~d~ 198 (498)
.+.+..+........|+..+..|.+.-+.. . .|..+...+.... ...|.++. +. .++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 445555555555566777777887655543 2 1222211111222 23455544 32 2456899999999
Q ss_pred eEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---------e
Q 010883 199 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---------S 269 (498)
Q Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~---------~ 269 (498)
.++...+..-...... ....+.+. -...+..+........++..+.+|.+..++...-.. .
T Consensus 124 ~vKrt~l~e~~~~~~~----G~~ai~L~------~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~ 193 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLAR----GKIAINLD------EGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG 193 (370)
T ss_dssp EEEEEEGGGGCSCCTT----CEESSCCC------TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred eEEEeEHHHhhcccCC----ceEEEEeC------CCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeee
Confidence 9999886542211100 00001110 012455555555566788888999888887643111 1
Q ss_pred EEEeccCCCeeEEEEeCC----------------------------------CCCEEEEeeCCCeEEEEcCccccCCC--
Q 010883 270 LRILAHTSDVNTVCFGDE----------------------------------SGHLIYSGSDDNLCKVWDRRCLNVKG-- 313 (498)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~----------------------------------~~~~l~s~s~dg~i~vwd~~~~~~~~-- 313 (498)
..+ .....|.++...+. ++..+++.+..|..+...+......+
T Consensus 194 i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg 272 (370)
T 3l6v_A 194 IRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRG 272 (370)
T ss_dssp CCC-CTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTT
T ss_pred EEe-CCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccC
Confidence 111 22344555554421 45678899999999988775332211
Q ss_pred ---ceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 314 ---KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 314 ---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
.....+....+.+..+.+..+...++..+..|.+.-..+..
T Consensus 273 ~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 273 TQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 12222222334555554444455666667777776666554
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.23 E-value=72 Score=31.09 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=40.5
Q ss_pred eeEEEEEeCCCCCeEEEEEC------------CCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcC
Q 010883 177 WTVTDTSLSPDQRHLVYASM------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 244 (498)
Q Consensus 177 ~~v~~~~~sp~~~~l~~~s~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~ 244 (498)
.....|.|.++|.+.+.... ...+..++..+++...+...+. ...++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~---------------~aEpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------------GCEVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT---------------TCEEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC---------------CccccCCEECC
Confidence 35788999999987763321 1256666666666544432111 12689999999
Q ss_pred CCCEEEEEe
Q 010883 245 DGRELVAGS 253 (498)
Q Consensus 245 ~g~~l~~g~ 253 (498)
|++.|++.-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999888764
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=44.01 E-value=2.7e+02 Score=28.10 Aligned_cols=35 Identities=6% Similarity=-0.041 Sum_probs=25.9
Q ss_pred eeEEEEE-eCCCCCeEEEEEC-----CCeEEEEECCCCcee
Q 010883 177 WTVTDTS-LSPDQRHLVYASM-----SPIVHIVDVGSGTME 211 (498)
Q Consensus 177 ~~v~~~~-~sp~~~~l~~~s~-----d~~i~iwd~~~~~~~ 211 (498)
+....+. ++|++++++.+-. ...++++|+.+++..
T Consensus 129 ~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~ 169 (711)
T 4hvt_A 129 VAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV 169 (711)
T ss_dssp EEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC
T ss_pred EEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC
Confidence 4555666 8999998876532 237999999998865
No 381
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=37.99 E-value=2.4e+02 Score=25.80 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=88.9
Q ss_pred eEEEEECCCC--eeeEEEec------cCCCeeEEEEe-C-CC----CCEEEEee-CCCeEEEEcCccccCCCceeEEe--
Q 010883 257 CIYVYDLEAN--KLSLRILA------HTSDVNTVCFG-D-ES----GHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVL-- 319 (498)
Q Consensus 257 ~i~vwd~~~~--~~~~~~~~------~~~~v~~~~~~-~-~~----~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~-- 319 (498)
.|.+||+.++ +.++++.- ..+.+..+.+. . +. +.+++.+. ..+-|.|+|+. .++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~----~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK----KQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT----TTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC----CCcEEEEccC
Confidence 5778888888 77776642 23457777774 1 11 33444443 46789999987 32222221
Q ss_pred ------------ccc----cccEEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCCCccccccCcccccccceeecCCc
Q 010883 320 ------------MGH----LEGITFIDSRGD----GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 379 (498)
Q Consensus 320 ------------~~~----~~~v~~l~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (498)
.+. ...+..|+.+|+ ++.|.-....+ -++|.+.+.......
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~------------------ 260 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKG------------------ 260 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTT------------------
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcc------------------
Confidence 111 246788888887 66666555443 234443321000000
Q ss_pred CcccccCCCCceEEEEccCceeEEEEEEEeccccC-CCCcEEEEEecCCeEEEEECCC-C---cEEEEec--cCCCCeee
Q 010883 380 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS-TGQKYIYTGSHDSCVYVYDLVS-G---EQVAALK--YHTSPVRD 452 (498)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~i~iwd~~~-~---~~~~~~~--~h~~~v~~ 452 (498)
+ ...+..+-.......... .+++ .+|.++++--..+.|..|+..+ . +....+. ..-..+.+
T Consensus 261 ----~----~~~v~~~G~kg~~s~~~~----~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~ 328 (381)
T 3q6k_A 261 ----G----KLNPELLGNRGKYNDAIA----LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTD 328 (381)
T ss_dssp ----C----CCCCEEEEECCTTCCEEE----EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEE
T ss_pred ----h----hhceEEeeecCCCCCcce----EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCe
Confidence 0 011111111100000001 1232 3677777777788999999865 1 1122222 12234677
Q ss_pred eEEcCCCCeEEEEe
Q 010883 453 CSWHPSQPMLVSSS 466 (498)
Q Consensus 453 l~~sp~~~~l~s~~ 466 (498)
+.+.+++.+.+.+.
T Consensus 329 ~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 329 ISVDSKGGLWFMSN 342 (381)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCeEEEEEC
Confidence 88877777555553
No 382
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=36.29 E-value=3.7e+02 Score=27.47 Aligned_cols=159 Identities=14% Similarity=0.037 Sum_probs=76.0
Q ss_pred CCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecCC----CceeEEEEEeCCCC-CeEEEEECCCe----E
Q 010883 131 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKS----LRWTVTDTSLSPDQ-RHLVYASMSPI----V 200 (498)
Q Consensus 131 ~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~-~~l~~~s~d~~----i 200 (498)
...|.+++++|.. ..+.+++..+.|...+ +.|........... ....|.+|++.|.. ..+.++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999963 5566666666654443 34444443222111 12369999999853 44444432211 2
Q ss_pred EEEE-CCCCceeccccccccccCccccccCCCCceecEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEEec----
Q 010883 201 HIVD-VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILA---- 274 (498)
Q Consensus 201 ~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---- 274 (498)
.||. .+.|+.-........ ....... ...+..+++.|. ...++++...+.|+. ....++.-..+..
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~-----~~~~~~~--~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~ 164 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFP-----MGANDMG--RNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDA 164 (789)
T ss_dssp EEEEESSTTSEEEEEECSSC-----CCTTSTT--TTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCC
T ss_pred EEEEECCCCCcceeccCCcc-----cCccCCC--ccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccc
Confidence 3333 333432222111100 0000000 002445777774 345666654443332 2223332222221
Q ss_pred --cCCCeeEEEEeCCCCCEEEEeeCC
Q 010883 275 --HTSDVNTVCFGDESGHLIYSGSDD 298 (498)
Q Consensus 275 --~~~~v~~~~~~~~~~~~l~s~s~d 298 (498)
....+..+.+.|.++..++++..+
T Consensus 165 ~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 165 FTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 124578888876566666666654
No 383
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=34.30 E-value=2.4e+02 Score=24.75 Aligned_cols=202 Identities=9% Similarity=0.020 Sum_probs=104.2
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEE------EeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEEECC---CCcee
Q 010883 141 ADGSLFVAGFQASQIRIYDVERGWKIQK------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG---SGTME 211 (498)
Q Consensus 141 ~dg~~la~~~~dg~i~vw~~~~~~~~~~------~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iwd~~---~~~~~ 211 (498)
|+..++++.+.+|.|+--.+..-..... -...... ..+..+........|+..+..|.+.-+... .....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4566788899999998776653111000 0001111 233344444445566666777765555432 21110
Q ss_pred ccccccccccCccccccCCCCceecEEEEEEc---CCCCEEEEEeCCCeEEEEECCC-------CeeeEEEeccCCCeeE
Q 010883 212 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---TDGRELVAGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNT 281 (498)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s---~~g~~l~~g~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~ 281 (498)
. .-......+.+. ....|.++... .++.+++..+.+|.++-..+.. +.....+..+ +.+..
T Consensus 80 a--~G~~i~~~l~l~------~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~ 150 (307)
T 1zi0_A 80 A--RGRPIVNLLPLE------QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIG 150 (307)
T ss_dssp S--CCEEGGGTSCCC------TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEE
T ss_pred C--CCeEhhhccCCC------CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEE
Confidence 0 000000011111 11145555432 3566799999999999887642 1122223333 55656
Q ss_pred EEEeCCCCCEEEEeeCCCeEEEEcCccccCC-----CceeEEeccccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 010883 282 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 354 (498)
Q Consensus 282 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 354 (498)
+... .+...++..+.+|.+..+........ +.....+. ..+.|.++...+++..+++.+..|.++-.++..
T Consensus 151 ~~~~-~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 151 VDLT-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEe-CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 5555 34556777888898887776422111 11222222 335566666555566788889999988887754
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=32.90 E-value=4.1e+02 Score=27.07 Aligned_cols=155 Identities=10% Similarity=0.041 Sum_probs=74.7
Q ss_pred eeEEEEEeCCCC-CeEEEEECCCeEEEEECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCC-CEEEEEeC
Q 010883 177 WTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSS 254 (498)
Q Consensus 177 ~~v~~~~~sp~~-~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g-~~l~~g~~ 254 (498)
+.|.+|+++|.. ..+.++...+.|...+=.......+....... . -....+.++++.|.. ..++++..
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~-~---------~~~~~i~~ia~dp~~~~~i~~~~g 84 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQ-D---------MNIMGTESIALDPNNPDRLYLAQG 84 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGG-G---------GGGCSEEEEEEETTEEEEEEEEEC
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcc-c---------ccCCceeEEEECCCCCCEEEEEeC
Confidence 479999999964 55666666666655543322222221100000 0 011268999999843 44544432
Q ss_pred C------CeEEEEECCCCeeeEEEecc-------C--CCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccCCCceeEEe
Q 010883 255 D------DCIYVYDLEANKLSLRILAH-------T--SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 319 (498)
Q Consensus 255 d------g~i~vwd~~~~~~~~~~~~~-------~--~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 319 (498)
. +.|. .....++.-..+... . ..+..+++.|.+.+.++.+...+.| |-........+.+...
T Consensus 85 ~~~~~~~~~v~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~ 161 (789)
T 1sqj_A 85 RYVGDEWAAFY-VSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSI 161 (789)
T ss_dssp SCTTSSCCEEE-EESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTS
T ss_pred ccCCCcccEEE-EECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccC
Confidence 2 3332 233344332322210 1 1356788876666677777644433 2222111122222111
Q ss_pred c---cccccEEEEEEcCC-CCEEEEEeCC
Q 010883 320 M---GHLEGITFIDSRGD-GRYLISNGKD 344 (498)
Q Consensus 320 ~---~~~~~v~~l~~~~~-~~~l~s~~~d 344 (498)
. .....+..+.++|. +..++++..+
T Consensus 162 ~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 162 PDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1 11245788888874 4455555544
No 385
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=29.13 E-value=1.1e+02 Score=29.66 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=43.8
Q ss_pred CceEEEEEcCCC--CEEEEEECCCeEEEEECCCC--e-EEEEEeecCCCceeEE-EEEeCCCCCeEEEEECCCeEEE
Q 010883 132 SRAYVSQFSADG--SLFVAGFQASQIRIYDVERG--W-KIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHI 202 (498)
Q Consensus 132 ~~v~~~~~s~dg--~~la~~~~dg~i~vw~~~~~--~-~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~s~d~~i~i 202 (498)
...++++....+ ..+..|..+|.|.-..+..+ . .+...........+|. .+.+++++.+|.+++..+.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 356667665544 45778899998754444322 1 2222222222234785 8999999999999887765554
No 386
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=27.45 E-value=5e+02 Score=26.31 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=37.4
Q ss_pred CCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecC-----C----CceeEEEEEeCCC-CCeEEEE
Q 010883 130 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAK-----S----LRWTVTDTSLSPD-QRHLVYA 194 (498)
Q Consensus 130 h~~~v~~~~~s~dg-~~la~~~~dg~i~vw~~~~~~~~~~~~~~~-----~----~~~~v~~~~~sp~-~~~l~~~ 194 (498)
-.+.|.+++++|.. ..+.++...|.|...+ +.|+......... . ....|.++++.|. ...+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 46789999999976 5666666566543332 3344444333211 0 2235899999983 3444443
No 387
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=27.40 E-value=2.9e+02 Score=23.48 Aligned_cols=106 Identities=9% Similarity=-0.009 Sum_probs=55.6
Q ss_pred EEEEEeCCCeEEEEECCCCee-eEEEeccCCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccc---cCCCceeEEec--c
Q 010883 248 ELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL---NVKGKPAGVLM--G 321 (498)
Q Consensus 248 ~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~--~ 321 (498)
.+++.+.+|.|+--....-.. ...+.. .+.+..+..... ...|+..+..|.++-+..... ...+.++..+. .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t-~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKS-NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEET-TSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCC-CCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 345566777776554432110 011222 234444443323 334556677888766554322 22333221111 1
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 010883 322 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 355 (498)
Q Consensus 322 ~~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 355 (498)
..+.|.++....++.+|+.++..|.++...+...
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 2356766654345677888999999999988654
No 388
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=22.68 E-value=4.9e+02 Score=25.90 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred CceEEEEccCceeEEEEEEEeccccCCCCcEEEEEecCCeEE-EEECCCCc-------EEEEec--cCCCCeeeeEEcCC
Q 010883 389 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY-VYDLVSGE-------QVAALK--YHTSPVRDCSWHPS 458 (498)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~-iwd~~~~~-------~~~~~~--~h~~~v~~l~~sp~ 458 (498)
+.++.........-+.+.......-..+-..++.|+.+|.|. +.-...+. .+..++ ....+|..+.++++
T Consensus 401 ~~Pll~~~~~~~~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~ 480 (667)
T 4gz8_A 401 NRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTK 480 (667)
T ss_dssp GSCSEEECSSSCCEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETT
T ss_pred CCceEEEcCcccceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCC
Q ss_pred CCeEEEEeCCCcEEE
Q 010883 459 QPMLVSSSWDGDVVR 473 (498)
Q Consensus 459 ~~~l~s~~~Dg~i~i 473 (498)
...|..++.++.++|
T Consensus 481 ~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 481 QQQLYIGSTAGVAQL 495 (667)
T ss_dssp TTEEEEEBSSCEEEE
T ss_pred CCEEEEEECCEEEEE
No 389
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.12 E-value=4.4e+02 Score=23.82 Aligned_cols=211 Identities=9% Similarity=0.051 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCC---------eEEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCeEEEE
Q 010883 133 RAYVSQFSADGSLFVAGFQASQIRIYDVERG---------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 203 (498)
Q Consensus 133 ~v~~~~~s~dg~~la~~~~dg~i~vw~~~~~---------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~i~iw 203 (498)
.+..++++.-....++-..||.|..|-.... ..........-....|..++-. ....+....+|.|..|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 4555677776677777778888988864321 1111111111111246666553 3445556678999999
Q ss_pred ECCCCceeccccccccccCccccccCCCCceecEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------eeeEEE
Q 010883 204 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-----------KLSLRI 272 (498)
Q Consensus 204 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-----------~~~~~~ 272 (498)
-....-.................. -....|..++......+.++...+|.|+.|-.... .....+
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~----~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 259 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEA----LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI 259 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGG----GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred CCCCCCCcCCCCCcccccceEecc----cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe
Confidence 754311100000000000000000 00114666666543356677778999999965321 011112
Q ss_pred ecc-CCCeeEEEEeCCCCCEEEEeeCCCeEEEEcCccccC------CCc-eeEEecc-ccccEEEEEEcCCCCEEEEEeC
Q 010883 273 LAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV------KGK-PAGVLMG-HLEGITFIDSRGDGRYLISNGK 343 (498)
Q Consensus 273 ~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------~~~-~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~ 343 (498)
... ...|..++.. ....++-..||.|+.|-...... ... ....+.. ....|..++.. ..+.++...
T Consensus 260 ~~~~~~~v~~v~~G---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~ 334 (389)
T 3kci_A 260 DSLTGLGVVKVECG---SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTE 334 (389)
T ss_dssp GGGTTSCEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEET
T ss_pred cccCCCcEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECC
Confidence 111 1246666654 33455557899999996542110 000 1111111 12346666654 345566678
Q ss_pred CCcEEEEeCCC
Q 010883 344 DQAIKLWDIRK 354 (498)
Q Consensus 344 dg~i~iwd~~~ 354 (498)
||.|+.|-...
T Consensus 335 ~G~v~~wG~n~ 345 (389)
T 3kci_A 335 DGEVYTWGDND 345 (389)
T ss_dssp TCCEEEEECCT
T ss_pred CCCEEEeeCCC
Confidence 99999998765
No 390
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=21.89 E-value=40 Score=31.13 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHhhcccCCccccccccCCC
Q 010883 61 IAQLTKLKSEPKEHFSKEVPGK 82 (498)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ 82 (498)
..+|.+++++|.|++.++||.+
T Consensus 393 ~~~i~~fGQ~P~QLF~~pHP~R 414 (414)
T 1t77_A 393 EAQIRSFGQTPSQLLIEPHPPR 414 (414)
T ss_dssp HHHHHHHCCCCCCCCSSCCCCC
T ss_pred HHHHHHcCCChhhhhcCCCCCC
Confidence 5688999999999999999864
No 391
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.21 E-value=2.3e+02 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=37.6
Q ss_pred cEEEEEecCCeEEEEECC-CCc-------EEEEec--cCCCCeeeeEEcCCCCeEEEEeCCCcEEE
Q 010883 418 KYIYTGSHDSCVYVYDLV-SGE-------QVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 473 (498)
Q Consensus 418 ~~l~~g~~dg~i~iwd~~-~~~-------~~~~~~--~h~~~v~~l~~sp~~~~l~s~~~Dg~i~i 473 (498)
..++.|+.+|.|.=.-+. .+. .+..+. ....+|..+.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 457789999977544332 211 222333 23578999999999999999998876665
No 392
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.15 E-value=2e+02 Score=27.45 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=42.2
Q ss_pred ceEEEEEcC----CC--CEEEEEECCCeEEEEECC-CCe------EEEEEeecCCCceeEEEEEeCCCCCeEEEEECCCe
Q 010883 133 RAYVSQFSA----DG--SLFVAGFQASQIRIYDVE-RGW------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 199 (498)
Q Consensus 133 ~v~~~~~s~----dg--~~la~~~~dg~i~vw~~~-~~~------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~s~d~~ 199 (498)
..+.++... |+ ..+..|..+|.|.-.-+. .+. .+...+.......+|..+.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666543 24 357788999986543332 211 11111122123458999999999999999998876
Q ss_pred EEE
Q 010883 200 VHI 202 (498)
Q Consensus 200 i~i 202 (498)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
Done!