Query 010884
Match_columns 498
No_of_seqs 360 out of 2897
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0352 ATP-dependent DNA heli 100.0 1.6E-95 4E-100 691.9 33.5 471 22-495 3-493 (641)
2 COG0514 RecQ Superfamily II DN 100.0 5.8E-91 1.3E-95 709.9 41.7 400 24-440 3-402 (590)
3 PLN03137 ATP-dependent DNA hel 100.0 8.4E-84 1.8E-88 691.6 47.9 420 19-440 441-869 (1195)
4 KOG0351 ATP-dependent DNA heli 100.0 1.2E-83 2.6E-88 691.4 34.9 434 23-464 249-687 (941)
5 KOG0353 ATP-dependent DNA heli 100.0 8.4E-81 1.8E-85 583.9 28.2 407 17-438 73-526 (695)
6 PRK11057 ATP-dependent DNA hel 100.0 1.1E-75 2.4E-80 625.0 48.4 402 20-441 7-408 (607)
7 TIGR00614 recQ_fam ATP-depende 100.0 2.7E-75 5.8E-80 606.9 46.9 394 29-438 2-402 (470)
8 TIGR01389 recQ ATP-dependent D 100.0 2.7E-75 5.8E-80 623.8 47.2 395 27-440 2-396 (591)
9 PRK04837 ATP-dependent RNA hel 100.0 1.5E-53 3.2E-58 439.4 35.5 342 15-375 8-372 (423)
10 KOG0331 ATP-dependent RNA heli 100.0 3.8E-54 8.2E-59 432.0 30.0 343 15-377 91-460 (519)
11 PTZ00110 helicase; Provisional 100.0 1.6E-52 3.6E-57 441.1 39.4 344 15-376 130-495 (545)
12 PRK11776 ATP-dependent RNA hel 100.0 5.8E-52 1.3E-56 432.1 37.8 343 15-376 4-360 (460)
13 PRK04537 ATP-dependent RNA hel 100.0 4.6E-52 1E-56 439.1 36.7 345 16-376 10-375 (572)
14 PRK10590 ATP-dependent RNA hel 100.0 7.3E-52 1.6E-56 429.8 37.2 342 16-376 2-363 (456)
15 KOG0330 ATP-dependent RNA heli 100.0 1.1E-52 2.3E-57 396.4 27.3 351 8-379 54-421 (476)
16 PRK11192 ATP-dependent RNA hel 100.0 2.2E-51 4.9E-56 425.0 38.7 343 16-374 2-361 (434)
17 PRK01297 ATP-dependent RNA hel 100.0 1.8E-51 3.9E-56 429.6 37.4 348 13-375 85-452 (475)
18 PLN00206 DEAD-box ATP-dependen 100.0 9.9E-52 2.2E-56 433.9 35.2 343 15-376 121-486 (518)
19 PRK11634 ATP-dependent RNA hel 100.0 1.1E-50 2.3E-55 431.0 40.6 345 15-378 6-365 (629)
20 COG0513 SrmB Superfamily II DN 100.0 7.8E-51 1.7E-55 424.5 36.6 343 15-377 29-393 (513)
21 PTZ00424 helicase 45; Provisio 100.0 2E-49 4.3E-54 407.2 36.6 346 14-376 27-385 (401)
22 KOG0328 Predicted ATP-dependen 100.0 3.1E-50 6.7E-55 364.6 26.2 347 10-376 22-384 (400)
23 KOG0333 U5 snRNP-like RNA heli 100.0 6.2E-50 1.3E-54 390.0 29.8 337 17-371 247-630 (673)
24 TIGR03817 DECH_helic helicase/ 100.0 2.2E-48 4.8E-53 421.1 34.7 339 20-371 19-394 (742)
25 KOG0336 ATP-dependent RNA heli 100.0 8.2E-49 1.8E-53 371.4 25.2 337 20-376 225-583 (629)
26 KOG0345 ATP-dependent RNA heli 100.0 1.2E-47 2.6E-52 370.1 30.9 335 20-376 11-375 (567)
27 KOG0338 ATP-dependent RNA heli 100.0 5.2E-48 1.1E-52 375.2 22.8 343 14-377 180-545 (691)
28 KOG0340 ATP-dependent RNA heli 100.0 4.9E-47 1.1E-51 354.1 26.5 354 12-380 4-376 (442)
29 KOG0342 ATP-dependent RNA heli 100.0 1.8E-46 4E-51 364.3 30.3 345 11-374 78-446 (543)
30 KOG0343 RNA Helicase [RNA proc 100.0 2.2E-46 4.8E-51 366.9 28.1 342 14-376 68-434 (758)
31 KOG0348 ATP-dependent RNA heli 100.0 1.6E-45 3.5E-50 359.7 27.0 343 14-375 135-564 (708)
32 KOG0326 ATP-dependent RNA heli 100.0 1.4E-46 2.9E-51 346.3 16.7 344 14-380 84-444 (459)
33 KOG0335 ATP-dependent RNA heli 100.0 3.4E-45 7.3E-50 361.4 24.1 342 16-374 75-453 (482)
34 KOG0346 RNA helicase [RNA proc 100.0 9.8E-45 2.1E-49 347.0 24.8 348 7-376 11-424 (569)
35 KOG0347 RNA helicase [RNA proc 100.0 2.3E-44 5E-49 352.7 23.8 346 16-381 182-586 (731)
36 TIGR00580 mfd transcription-re 100.0 8.2E-42 1.8E-46 373.2 39.3 321 19-365 433-770 (926)
37 KOG0332 ATP-dependent RNA heli 100.0 6.9E-43 1.5E-47 328.2 26.1 349 7-376 82-455 (477)
38 PRK13767 ATP-dependent helicas 100.0 3.6E-42 7.9E-47 379.8 35.5 324 22-363 18-396 (876)
39 PRK02362 ski2-like helicase; P 100.0 8.5E-42 1.8E-46 373.4 34.0 330 17-366 3-398 (737)
40 PRK14701 reverse gyrase; Provi 100.0 6E-42 1.3E-46 389.9 32.3 333 23-376 65-467 (1638)
41 PRK10917 ATP-dependent DNA hel 100.0 8.4E-41 1.8E-45 360.7 38.6 316 23-363 247-587 (681)
42 KOG0339 ATP-dependent RNA heli 100.0 9.7E-42 2.1E-46 331.1 28.0 347 14-379 222-589 (731)
43 TIGR00643 recG ATP-dependent D 100.0 2.3E-40 5.1E-45 355.0 37.8 316 22-362 220-563 (630)
44 KOG0341 DEAD-box protein abstr 100.0 4.3E-43 9.4E-48 330.5 13.7 333 14-367 169-530 (610)
45 PRK10689 transcription-repair 100.0 4.5E-40 9.8E-45 366.9 38.8 319 20-364 583-918 (1147)
46 COG1201 Lhr Lhr-like helicases 100.0 1.8E-40 3.9E-45 351.1 33.8 323 21-364 7-361 (814)
47 KOG0350 DEAD-box ATP-dependent 100.0 4.1E-41 9E-46 326.8 21.0 354 13-379 125-554 (620)
48 KOG0344 ATP-dependent RNA heli 100.0 1.8E-40 3.9E-45 329.8 25.0 340 21-376 142-506 (593)
49 KOG0327 Translation initiation 100.0 1.1E-40 2.3E-45 316.2 21.8 342 13-376 24-381 (397)
50 KOG0334 RNA helicase [RNA proc 100.0 2.5E-40 5.4E-45 348.2 26.7 344 15-377 365-732 (997)
51 PRK00254 ski2-like helicase; P 100.0 1.9E-39 4.1E-44 354.0 30.9 323 17-366 3-389 (720)
52 KOG4284 DEAD box protein [Tran 100.0 5.7E-40 1.2E-44 326.6 22.1 341 13-373 23-388 (980)
53 PRK01172 ski2-like helicase; P 100.0 2E-38 4.3E-43 344.5 32.9 336 17-375 3-389 (674)
54 PRK09751 putative ATP-dependen 100.0 2.1E-37 4.5E-42 347.2 28.9 291 58-363 1-383 (1490)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-36 2.7E-41 323.7 29.9 317 25-362 3-388 (844)
56 PRK09401 reverse gyrase; Revie 100.0 3.1E-36 6.7E-41 336.9 32.4 307 24-350 67-429 (1176)
57 TIGR01587 cas3_core CRISPR-ass 100.0 2.1E-36 4.6E-41 305.8 25.6 302 55-365 1-336 (358)
58 COG1111 MPH1 ERCC4-like helica 100.0 3.2E-35 7E-40 288.3 31.7 317 35-369 12-485 (542)
59 TIGR03158 cas3_cyano CRISPR-as 100.0 2.8E-35 6E-40 295.3 31.1 297 42-350 1-357 (357)
60 COG1202 Superfamily II helicas 100.0 2.3E-36 4.9E-41 298.0 22.6 333 16-364 195-552 (830)
61 KOG0337 ATP-dependent RNA heli 100.0 7.9E-37 1.7E-41 291.5 16.6 341 14-373 20-376 (529)
62 PHA02653 RNA helicase NPH-II; 100.0 9.2E-35 2E-39 307.9 32.4 300 42-371 168-520 (675)
63 PHA02558 uvsW UvsW helicase; P 100.0 9.7E-35 2.1E-39 304.2 27.6 298 37-366 113-453 (501)
64 PRK12898 secA preprotein trans 100.0 1.9E-33 4.1E-38 293.5 34.9 325 27-368 93-589 (656)
65 COG1205 Distinct helicase fami 100.0 3.2E-34 6.9E-39 311.8 29.4 334 23-365 56-422 (851)
66 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.8E-33 6.2E-38 303.3 30.9 301 42-370 6-341 (819)
67 PRK11664 ATP-dependent RNA hel 100.0 1.6E-33 3.6E-38 305.9 28.9 299 43-369 10-343 (812)
68 PRK13766 Hef nuclease; Provisi 100.0 1.4E-32 2.9E-37 304.2 35.5 312 37-366 14-480 (773)
69 PRK09200 preprotein translocas 100.0 1.1E-32 2.3E-37 293.7 33.2 326 26-368 67-544 (790)
70 TIGR03714 secA2 accessory Sec 100.0 2.7E-32 5.8E-37 288.0 33.3 322 28-368 61-540 (762)
71 TIGR00603 rad25 DNA repair hel 100.0 1.5E-32 3.2E-37 289.9 29.3 304 38-367 255-609 (732)
72 COG1204 Superfamily II helicas 100.0 9.1E-33 2E-37 296.5 26.0 322 20-362 14-405 (766)
73 TIGR01054 rgy reverse gyrase. 100.0 8.1E-32 1.8E-36 301.9 32.9 293 24-337 65-409 (1171)
74 PRK05580 primosome assembly pr 100.0 2.6E-31 5.7E-36 285.9 35.2 311 38-366 144-550 (679)
75 PRK04914 ATP-dependent helicas 100.0 9.4E-31 2E-35 285.4 35.5 315 38-363 152-601 (956)
76 KOG0354 DEAD-box like helicase 100.0 1.2E-31 2.5E-36 277.9 24.0 316 35-368 59-532 (746)
77 TIGR00963 secA preprotein tran 100.0 1E-30 2.3E-35 274.3 31.0 325 26-368 45-520 (745)
78 TIGR00595 priA primosomal prot 100.0 4.4E-31 9.5E-36 274.6 27.8 287 57-363 1-379 (505)
79 COG1200 RecG RecG-like helicas 100.0 5.7E-30 1.2E-34 261.7 33.9 324 18-366 243-592 (677)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 7.7E-30 1.7E-34 267.1 29.2 331 31-378 103-504 (1230)
81 COG1061 SSL2 DNA or RNA helica 100.0 8.5E-30 1.8E-34 261.9 28.4 296 36-357 34-382 (442)
82 PRK11131 ATP-dependent RNA hel 100.0 4.1E-30 8.8E-35 284.0 27.6 299 42-370 78-416 (1294)
83 COG1197 Mfd Transcription-repa 100.0 1.4E-28 3E-33 264.5 34.7 322 18-365 575-913 (1139)
84 KOG0329 ATP-dependent RNA heli 100.0 3.2E-31 7E-36 237.7 10.3 298 14-366 41-356 (387)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.2E-28 6.9E-33 270.1 26.8 300 44-369 73-408 (1283)
86 PRK12906 secA preprotein trans 100.0 3E-27 6.5E-32 250.4 30.9 325 26-367 69-555 (796)
87 KOG0951 RNA helicase BRR2, DEA 100.0 3.2E-27 7E-32 250.3 26.3 331 33-379 304-716 (1674)
88 PRK09694 helicase Cas3; Provis 100.0 2.1E-26 4.6E-31 249.9 31.2 311 34-354 282-664 (878)
89 KOG0349 Putative DEAD-box RNA 100.0 2.7E-28 5.9E-33 233.5 13.1 268 80-364 288-614 (725)
90 KOG0947 Cytoplasmic exosomal R 100.0 2.3E-26 4.9E-31 238.7 25.5 320 28-375 288-735 (1248)
91 PRK12904 preprotein translocas 99.9 3.6E-25 7.8E-30 235.6 32.7 324 27-368 71-576 (830)
92 PRK11448 hsdR type I restricti 99.9 1.7E-25 3.7E-30 249.5 30.3 317 38-363 413-813 (1123)
93 COG4581 Superfamily II RNA hel 99.9 1E-25 2.2E-30 242.5 23.8 305 32-361 114-533 (1041)
94 PLN03142 Probable chromatin-re 99.9 6.6E-25 1.4E-29 240.5 29.9 307 38-361 169-593 (1033)
95 PRK13104 secA preprotein trans 99.9 9.5E-25 2.1E-29 232.6 28.1 322 28-367 73-589 (896)
96 KOG0950 DNA polymerase theta/e 99.9 1.6E-25 3.5E-30 233.9 21.2 341 25-379 210-625 (1008)
97 KOG0948 Nuclear exosomal RNA h 99.9 3.4E-25 7.3E-30 224.9 16.2 315 39-378 130-553 (1041)
98 PRK13107 preprotein translocas 99.9 9.9E-23 2.1E-27 216.6 32.8 323 27-367 72-593 (908)
99 COG4098 comFA Superfamily II D 99.9 2.3E-22 5E-27 188.4 27.9 296 38-365 97-415 (441)
100 COG1643 HrpA HrpA-like helicas 99.9 8E-23 1.7E-27 219.0 23.7 300 41-368 53-390 (845)
101 PRK12899 secA preprotein trans 99.9 5.1E-22 1.1E-26 211.4 28.2 123 243-367 551-683 (970)
102 TIGR00631 uvrb excinuclease AB 99.9 7.6E-22 1.6E-26 210.3 29.4 130 245-375 427-563 (655)
103 KOG0922 DEAH-box RNA helicase 99.9 1.2E-22 2.5E-27 206.2 20.8 302 42-370 55-395 (674)
104 COG1198 PriA Primosomal protei 99.9 1.2E-21 2.6E-26 207.0 28.1 321 38-375 198-613 (730)
105 COG1203 CRISPR-associated heli 99.9 2.7E-22 5.8E-27 218.3 23.6 313 39-362 196-547 (733)
106 cd00268 DEADc DEAD-box helicas 99.9 2.3E-22 5.1E-27 186.7 18.8 182 17-214 1-195 (203)
107 COG1110 Reverse gyrase [DNA re 99.9 3.2E-21 7E-26 202.9 27.9 292 24-337 69-417 (1187)
108 PRK12900 secA preprotein trans 99.9 1.1E-20 2.4E-25 201.8 30.2 124 243-368 581-714 (1025)
109 KOG0385 Chromatin remodeling c 99.9 4.3E-21 9.4E-26 196.0 24.9 308 37-361 166-593 (971)
110 PRK05298 excinuclease ABC subu 99.9 1.3E-19 2.8E-24 194.7 34.2 108 257-365 445-557 (652)
111 PRK12326 preprotein translocas 99.9 5.7E-19 1.2E-23 183.9 36.2 324 26-368 67-550 (764)
112 KOG0923 mRNA splicing factor A 99.9 2.9E-20 6.3E-25 187.1 20.9 312 29-364 256-605 (902)
113 TIGR00348 hsdR type I site-spe 99.9 2.4E-19 5.2E-24 193.3 28.8 313 21-351 212-633 (667)
114 PF00270 DEAD: DEAD/DEAH box h 99.9 7.4E-21 1.6E-25 171.1 14.2 156 40-207 1-166 (169)
115 KOG0949 Predicted helicase, DE 99.8 1.5E-19 3.3E-24 188.6 23.7 154 39-206 512-674 (1330)
116 KOG4150 Predicted ATP-dependen 99.8 1.1E-19 2.3E-24 180.0 16.8 336 27-371 276-648 (1034)
117 TIGR01407 dinG_rel DnaQ family 99.8 2.7E-18 5.9E-23 190.8 30.1 168 194-365 596-814 (850)
118 KOG0926 DEAH-box RNA helicase 99.8 7E-20 1.5E-24 187.6 16.0 301 44-365 262-704 (1172)
119 COG0556 UvrB Helicase subunit 99.8 3.6E-18 7.8E-23 169.0 27.3 164 194-364 387-556 (663)
120 COG4096 HsdR Type I site-speci 99.8 2.2E-20 4.8E-25 194.0 12.3 324 5-352 129-525 (875)
121 KOG0924 mRNA splicing factor A 99.8 2.6E-19 5.7E-24 180.6 18.4 302 41-365 359-697 (1042)
122 PRK13103 secA preprotein trans 99.8 3.5E-18 7.5E-23 182.3 27.1 322 28-367 73-593 (913)
123 KOG0384 Chromodomain-helicase 99.8 3.4E-19 7.4E-24 190.3 19.1 314 37-365 369-811 (1373)
124 KOG0953 Mitochondrial RNA heli 99.8 2E-18 4.3E-23 171.2 20.7 281 54-377 192-488 (700)
125 KOG0387 Transcription-coupled 99.8 6.4E-18 1.4E-22 173.8 23.2 308 38-361 205-652 (923)
126 PRK12903 secA preprotein trans 99.8 2.7E-17 5.9E-22 173.7 28.4 322 27-367 68-541 (925)
127 cd00079 HELICc Helicase superf 99.8 2.2E-18 4.8E-23 147.9 14.2 118 244-361 12-131 (131)
128 KOG0390 DNA repair protein, SN 99.8 3.7E-17 8E-22 172.3 25.4 310 38-361 238-701 (776)
129 KOG0920 ATP-dependent RNA heli 99.8 1.2E-17 2.7E-22 178.6 20.6 304 39-369 174-548 (924)
130 PF00271 Helicase_C: Helicase 99.8 1.1E-18 2.3E-23 135.8 8.9 78 276-353 1-78 (78)
131 KOG1123 RNA polymerase II tran 99.8 1.1E-18 2.4E-23 170.8 11.0 290 37-354 301-636 (776)
132 CHL00122 secA preprotein trans 99.8 3.4E-16 7.4E-21 166.5 30.4 282 26-324 65-490 (870)
133 KOG0389 SNF2 family DNA-depend 99.8 3E-17 6.5E-22 168.8 21.4 321 35-367 397-890 (941)
134 PRK07246 bifunctional ATP-depe 99.8 2.2E-16 4.8E-21 173.4 27.5 168 195-365 575-783 (820)
135 KOG0925 mRNA splicing factor A 99.7 3.7E-16 8.1E-21 152.8 22.9 322 11-365 21-387 (699)
136 PRK12902 secA preprotein trans 99.7 1.8E-14 3.9E-19 153.2 33.9 281 27-325 75-506 (939)
137 PRK08074 bifunctional ATP-depe 99.7 1.3E-14 2.7E-19 162.3 32.3 170 195-365 674-893 (928)
138 KOG0386 Chromatin remodeling c 99.7 4.8E-16 1E-20 163.6 16.0 322 38-376 394-847 (1157)
139 TIGR03117 cas_csf4 CRISPR-asso 99.7 2.3E-14 5.1E-19 150.9 27.7 168 195-365 373-616 (636)
140 KOG1000 Chromatin remodeling p 99.6 6.5E-15 1.4E-19 144.5 18.0 309 37-363 197-599 (689)
141 PRK14873 primosome assembly pr 99.6 9.5E-14 2.1E-18 148.2 28.4 289 58-374 165-547 (665)
142 smart00487 DEXDc DEAD-like hel 99.6 4.1E-15 8.8E-20 136.5 14.8 167 34-215 4-182 (201)
143 smart00490 HELICc helicase sup 99.6 1.2E-15 2.5E-20 119.4 9.2 81 273-353 2-82 (82)
144 COG1199 DinG Rad3-related DNA 99.6 1.8E-13 3.9E-18 149.2 26.6 166 195-364 405-616 (654)
145 PRK11747 dinG ATP-dependent DN 99.6 7.2E-13 1.6E-17 143.9 30.4 164 196-365 459-674 (697)
146 KOG0392 SNF2 family DNA-depend 99.6 9E-14 2E-18 148.9 20.6 306 38-361 975-1448(1549)
147 COG4889 Predicted helicase [Ge 99.6 2.6E-14 5.5E-19 148.3 15.8 309 37-353 160-573 (1518)
148 TIGR00604 rad3 DNA repair heli 99.6 7.1E-13 1.5E-17 144.9 28.1 70 32-101 4-83 (705)
149 PF04851 ResIII: Type III rest 99.6 1.6E-15 3.6E-20 137.9 5.8 156 38-204 3-183 (184)
150 PRK12901 secA preprotein trans 99.6 8.8E-13 1.9E-17 141.9 26.7 123 243-367 611-743 (1112)
151 KOG0951 RNA helicase BRR2, DEA 99.6 2.3E-13 4.9E-18 146.2 21.3 396 38-483 1143-1605(1674)
152 KOG0388 SNF2 family DNA-depend 99.5 1.4E-12 3.1E-17 132.9 20.7 104 257-360 1043-1147(1185)
153 KOG0391 SNF2 family DNA-depend 99.4 1.2E-11 2.7E-16 131.8 20.7 104 258-361 1276-1381(1958)
154 cd00046 DEXDc DEAD-like helica 99.4 1.2E-12 2.5E-17 113.0 10.9 136 54-203 1-144 (144)
155 KOG4439 RNA polymerase II tran 99.4 3.9E-11 8.6E-16 122.7 20.1 91 271-361 759-852 (901)
156 KOG1002 Nucleotide excision re 99.4 3.6E-11 7.7E-16 118.5 18.2 108 258-365 638-749 (791)
157 TIGR02562 cas3_yersinia CRISPR 99.3 8.9E-11 1.9E-15 127.3 21.5 92 261-355 759-882 (1110)
158 COG0553 HepA Superfamily II DN 99.2 1.5E-09 3.2E-14 122.8 22.8 102 260-361 713-816 (866)
159 COG0653 SecA Preprotein transl 99.2 2.8E-09 6E-14 113.8 22.8 327 28-367 71-547 (822)
160 PF06862 DUF1253: Protein of u 99.1 3.8E-08 8.1E-13 99.5 26.5 241 135-376 130-426 (442)
161 PF02399 Herpes_ori_bp: Origin 99.1 5.4E-09 1.2E-13 110.9 20.1 282 55-365 51-388 (824)
162 KOG1015 Transcription regulato 99.1 1E-08 2.2E-13 108.2 20.6 104 258-361 1142-1271(1567)
163 PF00176 SNF2_N: SNF2 family N 99.1 6.1E-10 1.3E-14 109.5 10.4 160 42-219 1-188 (299)
164 COG0610 Type I site-specific r 99.0 1.9E-07 4.1E-12 104.7 25.9 281 54-352 274-636 (962)
165 PF07652 Flavi_DEAD: Flaviviru 98.9 2.3E-10 5.1E-15 96.7 0.8 133 52-207 3-140 (148)
166 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.5E-07 3.3E-12 89.5 12.0 133 28-171 68-210 (266)
167 smart00488 DEXDc2 DEAD-like he 98.6 3.3E-07 7E-12 89.4 10.4 77 33-110 4-93 (289)
168 smart00489 DEXDc3 DEAD-like he 98.6 3.3E-07 7E-12 89.4 10.4 77 33-110 4-93 (289)
169 KOG2340 Uncharacterized conser 98.5 3.7E-06 7.9E-11 84.5 16.6 119 258-376 552-679 (698)
170 KOG0921 Dosage compensation co 98.4 2.1E-06 4.5E-11 90.9 11.4 107 258-365 643-774 (1282)
171 PF13307 Helicase_C_2: Helicas 98.4 1.3E-06 2.9E-11 78.0 8.4 112 250-364 2-149 (167)
172 PRK15483 type III restriction- 98.3 1.2E-05 2.5E-10 88.5 15.5 45 308-352 501-545 (986)
173 TIGR00596 rad1 DNA repair prot 98.3 4.9E-05 1.1E-09 83.4 20.0 80 131-219 8-93 (814)
174 KOG1016 Predicted DNA helicase 98.2 0.00034 7.3E-09 73.6 22.9 115 259-373 720-855 (1387)
175 KOG0952 DNA/RNA helicase MER3/ 98.0 5.2E-07 1.1E-11 97.0 -2.2 124 38-172 927-1060(1230)
176 PF13872 AAA_34: P-loop contai 98.0 8.9E-05 1.9E-09 71.1 12.0 163 38-207 37-224 (303)
177 COG3587 Restriction endonuclea 97.9 0.00071 1.5E-08 72.3 18.2 71 307-377 482-565 (985)
178 KOG1802 RNA helicase nonsense 97.9 0.00013 2.8E-09 75.6 11.8 79 33-111 405-487 (935)
179 PF13604 AAA_30: AAA domain; P 97.8 6.5E-05 1.4E-09 69.0 8.4 58 38-95 1-63 (196)
180 PF13086 AAA_11: AAA domain; P 97.7 8.6E-05 1.9E-09 69.9 6.9 63 38-100 1-75 (236)
181 KOG1803 DNA helicase [Replicat 97.6 0.00014 3.1E-09 74.9 7.0 63 37-99 184-250 (649)
182 PF02562 PhoH: PhoH-like prote 97.6 0.00018 4E-09 65.8 6.6 54 37-90 3-61 (205)
183 KOG1805 DNA replication helica 97.5 0.0005 1.1E-08 74.3 10.7 127 38-172 669-810 (1100)
184 PF13245 AAA_19: Part of AAA d 97.5 0.00023 5E-09 54.3 5.9 53 46-98 2-62 (76)
185 smart00492 HELICc3 helicase su 97.5 0.001 2.2E-08 57.5 10.4 92 272-363 5-136 (141)
186 PRK10536 hypothetical protein; 97.5 0.0018 3.9E-08 61.2 12.1 57 34-90 55-116 (262)
187 smart00491 HELICc2 helicase su 97.4 0.001 2.2E-08 57.5 9.6 93 271-363 4-137 (142)
188 TIGR01448 recD_rel helicase, p 97.4 0.0018 3.9E-08 71.2 12.7 62 30-92 316-382 (720)
189 PRK10875 recD exonuclease V su 97.4 0.0016 3.5E-08 69.8 11.9 76 24-99 137-220 (615)
190 KOG0383 Predicted helicase [Ge 97.3 8.2E-05 1.8E-09 79.1 1.8 64 257-321 630-696 (696)
191 PF09848 DUF2075: Uncharacteri 97.3 0.00077 1.7E-08 68.0 8.7 46 55-100 3-53 (352)
192 PF13401 AAA_22: AAA domain; P 97.3 0.001 2.2E-08 56.5 7.7 19 52-70 3-21 (131)
193 TIGR01447 recD exodeoxyribonuc 97.2 0.0044 9.6E-08 66.3 12.8 70 29-98 136-213 (586)
194 PRK12723 flagellar biosynthesi 97.1 0.02 4.3E-07 58.0 15.4 124 54-216 175-310 (388)
195 TIGR00376 DNA helicase, putati 97.0 0.0034 7.3E-08 68.1 9.5 73 37-109 156-232 (637)
196 COG1875 NYN ribonuclease and A 96.9 0.0036 7.8E-08 61.2 8.4 63 30-92 220-290 (436)
197 cd00009 AAA The AAA+ (ATPases 96.9 0.0079 1.7E-07 51.4 10.1 18 53-70 19-36 (151)
198 PRK08181 transposase; Validate 96.9 0.0096 2.1E-07 57.3 11.2 54 40-93 89-148 (269)
199 KOG1132 Helicase of the DEAD s 96.9 0.0033 7.1E-08 67.6 8.5 73 30-103 14-135 (945)
200 PF13871 Helicase_C_4: Helicas 96.8 0.0046 1E-07 59.2 8.2 58 299-356 52-117 (278)
201 PRK08727 hypothetical protein; 96.8 0.0091 2E-07 56.4 9.9 15 54-68 42-56 (233)
202 PRK14956 DNA polymerase III su 96.7 0.0067 1.5E-07 62.6 9.2 20 55-74 42-61 (484)
203 PF00448 SRP54: SRP54-type pro 96.7 0.029 6.2E-07 51.5 12.3 127 56-215 4-137 (196)
204 PF12340 DUF3638: Protein of u 96.7 0.027 5.8E-07 52.3 11.9 102 37-143 22-143 (229)
205 PRK06526 transposase; Provisio 96.7 0.0065 1.4E-07 58.0 8.1 44 50-93 95-140 (254)
206 COG2256 MGS1 ATPase related to 96.7 0.0079 1.7E-07 59.6 8.6 58 29-87 22-82 (436)
207 PRK04296 thymidine kinase; Pro 96.6 0.0045 9.8E-08 56.5 6.4 32 55-86 4-38 (190)
208 PRK06893 DNA replication initi 96.6 0.0086 1.9E-07 56.4 8.3 47 159-208 92-139 (229)
209 PF00580 UvrD-helicase: UvrD/R 96.6 0.0035 7.7E-08 61.8 5.8 60 39-100 1-67 (315)
210 cd01124 KaiC KaiC is a circadi 96.6 0.034 7.3E-07 50.3 11.8 48 56-104 2-52 (187)
211 PRK11889 flhF flagellar biosyn 96.5 0.072 1.6E-06 53.6 14.5 55 158-216 320-375 (436)
212 PRK08084 DNA replication initi 96.5 0.024 5.3E-07 53.6 10.9 16 54-69 46-61 (235)
213 PRK12377 putative replication 96.5 0.016 3.4E-07 55.1 9.3 41 54-94 102-144 (248)
214 PRK07952 DNA replication prote 96.5 0.044 9.6E-07 51.9 12.1 53 41-93 79-141 (244)
215 PRK14974 cell division protein 96.4 0.1 2.2E-06 51.9 14.9 51 158-212 222-273 (336)
216 PLN03025 replication factor C 96.4 0.016 3.4E-07 57.6 9.2 49 158-212 99-147 (319)
217 smart00382 AAA ATPases associa 96.3 0.0083 1.8E-07 50.8 6.0 38 53-90 2-42 (148)
218 PF05970 PIF1: PIF1-like helic 96.3 0.018 3.8E-07 58.4 8.8 54 38-91 1-63 (364)
219 COG1419 FlhF Flagellar GTP-bin 96.2 0.12 2.7E-06 51.8 14.2 57 159-219 282-339 (407)
220 PRK08116 hypothetical protein; 96.2 0.089 1.9E-06 50.8 12.9 39 55-93 116-156 (268)
221 cd01122 GP4d_helicase GP4d_hel 96.2 0.083 1.8E-06 51.0 12.9 120 50-172 27-154 (271)
222 PRK06921 hypothetical protein; 96.2 0.097 2.1E-06 50.4 13.0 41 53-93 117-160 (266)
223 cd01120 RecA-like_NTPases RecA 96.2 0.069 1.5E-06 46.6 11.2 35 56-90 2-39 (165)
224 PRK05703 flhF flagellar biosyn 96.1 0.23 5.1E-06 51.2 16.1 55 158-216 299-355 (424)
225 PRK06835 DNA replication prote 96.1 0.082 1.8E-06 52.5 12.2 41 53-93 183-225 (329)
226 PRK08769 DNA polymerase III su 96.1 0.028 6E-07 55.5 8.6 35 36-70 2-43 (319)
227 PF13173 AAA_14: AAA domain 96.0 0.037 8E-07 46.9 8.4 41 159-207 62-102 (128)
228 PF05496 RuvB_N: Holliday junc 96.0 0.03 6.5E-07 51.8 8.1 20 55-74 52-71 (233)
229 KOG0989 Replication factor C, 96.0 0.019 4.1E-07 55.0 6.9 34 42-75 40-79 (346)
230 PRK06645 DNA polymerase III su 96.0 0.074 1.6E-06 55.9 11.8 20 54-73 44-63 (507)
231 PRK13889 conjugal transfer rel 96.0 0.037 8E-07 62.4 10.1 54 38-91 346-403 (988)
232 PF05621 TniB: Bacterial TniB 95.9 0.059 1.3E-06 52.1 10.0 17 54-70 62-78 (302)
233 PRK08903 DnaA regulatory inact 95.9 0.11 2.4E-06 48.7 11.8 16 53-68 42-57 (227)
234 PRK12323 DNA polymerase III su 95.8 0.028 6.1E-07 60.0 7.8 53 156-214 122-174 (700)
235 PRK14722 flhF flagellar biosyn 95.8 0.13 2.9E-06 51.7 12.3 54 158-215 215-269 (374)
236 PRK05973 replicative DNA helic 95.8 0.15 3.2E-06 48.1 11.8 85 18-104 21-117 (237)
237 PRK13826 Dtr system oriT relax 95.8 0.073 1.6E-06 60.6 11.4 68 37-108 380-452 (1102)
238 PRK14712 conjugal transfer nic 95.7 0.044 9.6E-07 64.3 9.9 65 38-106 835-908 (1623)
239 PRK14949 DNA polymerase III su 95.7 0.079 1.7E-06 58.6 11.2 46 157-208 118-163 (944)
240 PRK06731 flhF flagellar biosyn 95.7 0.34 7.3E-06 46.7 14.4 126 54-216 76-209 (270)
241 PRK04195 replication factor C 95.7 0.086 1.9E-06 55.6 11.3 20 53-72 39-58 (482)
242 PRK05707 DNA polymerase III su 95.7 0.058 1.3E-06 53.6 9.4 34 38-71 3-40 (328)
243 PRK13342 recombination factor 95.7 0.068 1.5E-06 55.2 10.3 19 54-72 37-55 (413)
244 COG1110 Reverse gyrase [DNA re 95.7 0.047 1E-06 60.1 9.1 92 243-334 110-211 (1187)
245 PTZ00112 origin recognition co 95.6 0.27 5.9E-06 54.2 14.5 32 39-70 759-798 (1164)
246 PRK12422 chromosomal replicati 95.6 0.11 2.4E-06 53.9 11.5 49 158-209 202-250 (445)
247 PF00308 Bac_DnaA: Bacterial d 95.6 0.06 1.3E-06 50.3 8.6 57 158-216 97-156 (219)
248 PRK05580 primosome assembly pr 95.6 0.076 1.6E-06 58.3 10.6 77 258-335 190-267 (679)
249 PF00004 AAA: ATPase family as 95.6 0.021 4.6E-07 48.2 5.0 17 56-72 1-17 (132)
250 KOG1133 Helicase of the DEAD s 95.6 0.35 7.6E-06 51.3 14.5 109 251-363 623-778 (821)
251 PRK13341 recombination factor 95.5 0.095 2.1E-06 57.6 11.0 18 55-72 54-71 (725)
252 PRK00149 dnaA chromosomal repl 95.5 0.096 2.1E-06 54.7 10.7 43 54-96 149-195 (450)
253 TIGR02928 orc1/cdc6 family rep 95.5 0.14 3.1E-06 51.8 11.6 17 54-70 41-57 (365)
254 PRK10917 ATP-dependent DNA hel 95.5 0.041 9E-07 60.5 8.0 78 257-334 309-391 (681)
255 PRK14959 DNA polymerase III su 95.5 0.13 2.9E-06 55.0 11.4 19 54-72 39-57 (624)
256 PRK12724 flagellar biosynthesi 95.4 0.62 1.4E-05 47.5 15.6 122 55-216 225-357 (432)
257 PRK14958 DNA polymerase III su 95.4 0.12 2.5E-06 54.7 11.0 44 156-205 117-160 (509)
258 TIGR02881 spore_V_K stage V sp 95.4 0.081 1.8E-06 50.9 9.1 19 54-72 43-61 (261)
259 KOG0741 AAA+-type ATPase [Post 95.4 0.12 2.7E-06 53.0 10.3 52 157-209 597-655 (744)
260 TIGR00595 priA primosomal prot 95.3 0.089 1.9E-06 55.6 9.7 76 258-334 25-101 (505)
261 PRK07003 DNA polymerase III su 95.3 0.051 1.1E-06 58.9 7.7 45 157-207 118-162 (830)
262 COG1474 CDC6 Cdc6-related prot 95.3 0.33 7.1E-06 49.0 13.2 17 54-70 43-59 (366)
263 PRK05642 DNA replication initi 95.3 0.11 2.3E-06 49.1 9.3 15 54-68 46-60 (234)
264 PF03796 DnaB_C: DnaB-like hel 95.2 0.062 1.4E-06 51.6 7.6 154 46-204 8-181 (259)
265 PRK13709 conjugal transfer nic 95.2 0.087 1.9E-06 62.8 9.9 66 38-107 967-1041(1747)
266 TIGR00362 DnaA chromosomal rep 95.2 0.14 3E-06 52.7 10.5 48 159-209 200-247 (405)
267 cd00984 DnaB_C DnaB helicase C 95.2 0.095 2.1E-06 49.6 8.6 115 52-172 12-137 (242)
268 TIGR02760 TraI_TIGR conjugativ 95.2 0.085 1.8E-06 64.3 9.9 66 37-106 1018-1092(1960)
269 cd01126 TraG_VirD4 The TraG/Tr 95.1 0.017 3.7E-07 59.0 3.5 56 55-110 1-57 (384)
270 PRK12727 flagellar biosynthesi 95.1 0.7 1.5E-05 48.5 14.9 54 158-215 428-481 (559)
271 TIGR02768 TraA_Ti Ti-type conj 95.1 0.81 1.8E-05 50.8 16.5 54 38-91 352-409 (744)
272 PRK14962 DNA polymerase III su 95.0 0.16 3.4E-06 53.2 10.3 18 55-72 38-55 (472)
273 KOG2028 ATPase related to the 95.0 0.12 2.6E-06 50.7 8.5 47 28-75 135-184 (554)
274 PHA02544 44 clamp loader, smal 95.0 0.21 4.6E-06 49.4 10.7 44 159-207 101-144 (316)
275 PRK05563 DNA polymerase III su 94.9 0.14 3.1E-06 54.8 9.8 19 54-72 39-57 (559)
276 TIGR03600 phage_DnaB phage rep 94.9 0.34 7.4E-06 50.1 12.4 152 46-203 183-354 (421)
277 PRK07994 DNA polymerase III su 94.9 0.11 2.5E-06 55.9 9.0 46 156-207 117-162 (647)
278 PRK14873 primosome assembly pr 94.9 0.2 4.4E-06 54.5 10.9 90 244-334 172-265 (665)
279 PRK14961 DNA polymerase III su 94.9 0.15 3.2E-06 51.7 9.4 18 55-72 40-57 (363)
280 TIGR02655 circ_KaiC circadian 94.9 0.11 2.4E-06 54.6 8.8 109 44-170 249-365 (484)
281 PRK08760 replicative DNA helic 94.8 0.13 2.8E-06 53.9 9.0 154 46-202 218-388 (476)
282 PRK14951 DNA polymerase III su 94.8 0.2 4.3E-06 54.0 10.4 46 157-208 123-168 (618)
283 PRK00411 cdc6 cell division co 94.8 0.75 1.6E-05 47.0 14.6 17 54-70 56-72 (394)
284 PRK06871 DNA polymerase III su 94.7 0.12 2.7E-06 51.0 8.2 54 154-213 103-156 (325)
285 PRK14964 DNA polymerase III su 94.7 0.24 5.1E-06 51.8 10.5 51 157-213 115-165 (491)
286 KOG1001 Helicase-like transcri 94.7 0.084 1.8E-06 57.2 7.5 137 55-217 154-306 (674)
287 PRK07764 DNA polymerase III su 94.7 0.12 2.6E-06 57.6 8.8 47 157-209 119-165 (824)
288 TIGR03015 pepcterm_ATPase puta 94.7 0.12 2.7E-06 49.7 8.1 31 41-71 26-61 (269)
289 TIGR02760 TraI_TIGR conjugativ 94.6 0.79 1.7E-05 56.2 16.1 55 38-92 429-488 (1960)
290 PRK08691 DNA polymerase III su 94.6 0.26 5.6E-06 53.3 10.6 45 157-207 118-162 (709)
291 PRK08533 flagellar accessory p 94.6 0.83 1.8E-05 43.0 13.1 51 52-103 23-76 (230)
292 PRK14087 dnaA chromosomal repl 94.6 0.39 8.4E-06 50.0 11.8 45 54-98 142-190 (450)
293 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.2 4.2E-06 46.9 8.9 18 53-70 38-55 (226)
294 COG1222 RPT1 ATP-dependent 26S 94.5 0.4 8.7E-06 47.2 10.9 38 54-92 186-223 (406)
295 PRK14960 DNA polymerase III su 94.5 0.16 3.4E-06 54.5 8.9 45 157-207 117-161 (702)
296 TIGR00643 recG ATP-dependent D 94.5 0.093 2E-06 57.2 7.5 77 258-334 284-365 (630)
297 cd01121 Sms Sms (bacterial rad 94.5 0.4 8.7E-06 48.5 11.5 58 45-103 69-134 (372)
298 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.14 3E-06 49.2 7.8 51 53-103 36-92 (259)
299 PF02534 T4SS-DNA_transf: Type 94.5 0.029 6.3E-07 59.0 3.4 57 54-110 45-102 (469)
300 PRK06067 flagellar accessory p 94.5 1.1 2.3E-05 42.3 13.8 109 46-172 13-134 (234)
301 COG1444 Predicted P-loop ATPas 94.5 0.35 7.5E-06 52.6 11.3 143 26-204 203-357 (758)
302 PRK06964 DNA polymerase III su 94.5 0.16 3.6E-06 50.6 8.4 33 39-71 2-39 (342)
303 PRK09111 DNA polymerase III su 94.4 0.29 6.2E-06 52.7 10.6 20 54-73 47-66 (598)
304 PF06745 KaiC: KaiC; InterPro 94.4 0.18 3.9E-06 47.2 8.2 130 53-202 19-159 (226)
305 PRK05748 replicative DNA helic 94.4 0.24 5.3E-06 51.6 9.9 155 46-204 192-366 (448)
306 PRK09183 transposase/IS protei 94.3 0.47 1E-05 45.5 11.1 42 50-92 99-143 (259)
307 PRK14086 dnaA chromosomal repl 94.3 0.28 6E-06 52.4 10.1 43 55-97 316-362 (617)
308 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.76 1.7E-05 43.4 12.4 58 46-104 9-74 (237)
309 PRK14948 DNA polymerase III su 94.3 0.22 4.8E-06 53.9 9.6 19 54-72 39-57 (620)
310 PRK09165 replicative DNA helic 94.3 0.28 6.1E-06 51.7 10.2 155 46-202 206-392 (497)
311 KOG1131 RNA polymerase II tran 94.3 0.14 3.1E-06 52.3 7.4 69 32-100 10-89 (755)
312 PRK14957 DNA polymerase III su 94.3 0.21 4.6E-06 53.0 9.1 42 156-203 117-158 (546)
313 PRK06090 DNA polymerase III su 94.2 0.18 3.9E-06 49.8 8.0 53 155-213 105-157 (319)
314 PF03354 Terminase_1: Phage Te 94.2 0.29 6.3E-06 51.5 10.1 61 41-101 1-77 (477)
315 PRK07133 DNA polymerase III su 94.2 0.29 6.3E-06 53.4 10.2 45 156-206 116-160 (725)
316 PRK13897 type IV secretion sys 94.2 0.042 9E-07 58.9 3.7 58 54-111 159-217 (606)
317 PRK14721 flhF flagellar biosyn 94.2 1.1 2.4E-05 45.9 13.8 55 158-216 269-324 (420)
318 PRK05595 replicative DNA helic 94.2 0.24 5.1E-06 51.7 9.2 157 45-203 189-361 (444)
319 PHA02533 17 large terminase pr 94.1 0.31 6.6E-06 51.8 10.1 63 38-100 59-126 (534)
320 PRK10919 ATP-dependent DNA hel 94.1 0.096 2.1E-06 57.5 6.5 62 38-101 2-70 (672)
321 KOG1133 Helicase of the DEAD s 94.1 0.063 1.4E-06 56.7 4.7 42 34-75 10-56 (821)
322 CHL00176 ftsH cell division pr 94.0 0.8 1.7E-05 49.7 13.2 19 54-72 217-235 (638)
323 PRK06904 replicative DNA helic 94.0 1.2 2.7E-05 46.6 14.2 145 55-201 223-382 (472)
324 PRK00771 signal recognition pa 94.0 1.8 4E-05 44.7 15.1 48 159-210 176-224 (437)
325 PRK11823 DNA repair protein Ra 94.0 0.54 1.2E-05 48.9 11.4 57 46-103 68-132 (446)
326 PRK14952 DNA polymerase III su 94.0 0.3 6.5E-06 52.3 9.7 50 157-212 117-166 (584)
327 PRK08939 primosomal protein Dn 94.0 0.11 2.5E-06 51.0 6.1 16 53-68 156-171 (306)
328 COG0593 DnaA ATPase involved i 93.9 0.34 7.4E-06 49.1 9.4 56 158-216 175-234 (408)
329 PRK08840 replicative DNA helic 93.9 0.77 1.7E-05 48.0 12.3 146 54-201 218-377 (464)
330 KOG0298 DEAD box-containing he 93.8 0.066 1.4E-06 60.1 4.5 148 52-214 373-560 (1394)
331 KOG0739 AAA+-type ATPase [Post 93.8 0.88 1.9E-05 43.7 11.2 111 55-212 168-286 (439)
332 PRK05636 replicative DNA helic 93.8 0.35 7.7E-06 51.0 9.7 123 46-172 254-389 (505)
333 PRK14088 dnaA chromosomal repl 93.7 0.74 1.6E-05 47.8 11.9 17 54-70 131-147 (440)
334 PHA02542 41 41 helicase; Provi 93.7 0.56 1.2E-05 49.1 10.9 156 44-203 176-354 (473)
335 TIGR01075 uvrD DNA helicase II 93.7 0.11 2.4E-06 57.7 6.0 63 37-101 3-72 (715)
336 PRK10416 signal recognition pa 93.7 3.5 7.5E-05 40.8 15.9 57 157-214 195-255 (318)
337 PRK06995 flhF flagellar biosyn 93.6 2.9 6.3E-05 43.7 15.9 55 158-216 334-389 (484)
338 PRK12402 replication factor C 93.6 0.71 1.5E-05 46.0 11.3 17 55-71 38-54 (337)
339 COG2255 RuvB Holliday junction 93.6 0.19 4.1E-06 47.9 6.4 46 28-73 23-72 (332)
340 PRK11773 uvrD DNA-dependent he 93.6 0.12 2.5E-06 57.4 6.0 63 37-101 8-77 (721)
341 PF05876 Terminase_GpA: Phage 93.6 0.22 4.8E-06 53.3 7.8 60 38-97 16-81 (557)
342 KOG0738 AAA+-type ATPase [Post 93.5 1.5 3.3E-05 43.7 12.7 58 13-70 181-262 (491)
343 PRK14953 DNA polymerase III su 93.5 0.78 1.7E-05 48.2 11.5 41 157-203 118-158 (486)
344 PRK14955 DNA polymerase III su 93.5 0.4 8.8E-06 49.1 9.3 47 156-208 125-171 (397)
345 PRK05896 DNA polymerase III su 93.5 0.76 1.7E-05 49.1 11.5 45 158-208 119-163 (605)
346 PRK13850 type IV secretion sys 93.4 0.083 1.8E-06 57.4 4.4 57 54-110 140-197 (670)
347 PF01695 IstB_IS21: IstB-like 93.4 0.12 2.6E-06 46.6 4.8 42 52-93 46-89 (178)
348 PRK08506 replicative DNA helic 93.4 0.55 1.2E-05 49.3 10.4 156 44-202 179-351 (472)
349 PRK09112 DNA polymerase III su 93.4 0.9 1.9E-05 45.6 11.4 44 156-205 139-182 (351)
350 COG4185 Uncharacterized protei 93.3 0.18 3.8E-06 43.8 5.3 37 56-93 5-41 (187)
351 PRK07940 DNA polymerase III su 93.3 0.38 8.1E-06 49.1 8.7 52 156-213 115-166 (394)
352 PRK11034 clpA ATP-dependent Cl 93.3 0.7 1.5E-05 51.2 11.4 18 54-71 208-225 (758)
353 PTZ00454 26S protease regulato 93.3 0.85 1.8E-05 46.7 11.3 20 53-72 179-198 (398)
354 COG1200 RecG RecG-like helicas 93.3 0.49 1.1E-05 50.5 9.6 78 257-334 310-392 (677)
355 PHA02244 ATPase-like protein 93.3 0.69 1.5E-05 46.3 10.2 25 47-71 113-137 (383)
356 PRK08699 DNA polymerase III su 93.3 0.5 1.1E-05 47.0 9.3 33 39-71 2-39 (325)
357 PRK07993 DNA polymerase III su 93.3 0.3 6.4E-06 48.7 7.7 136 39-214 3-158 (334)
358 TIGR00064 ftsY signal recognit 93.2 4 8.6E-05 39.5 15.3 53 157-213 153-212 (272)
359 TIGR00580 mfd transcription-re 93.2 0.25 5.4E-06 55.9 7.8 77 258-334 500-581 (926)
360 TIGR00665 DnaB replicative DNA 93.2 0.51 1.1E-05 49.0 9.7 154 45-203 183-355 (434)
361 PRK14969 DNA polymerase III su 93.1 0.3 6.5E-06 51.9 7.9 18 55-72 40-57 (527)
362 PRK08006 replicative DNA helic 93.1 1.2 2.6E-05 46.6 12.3 154 46-202 213-385 (471)
363 TIGR02639 ClpA ATP-dependent C 93.1 0.68 1.5E-05 51.5 11.0 18 54-71 204-221 (731)
364 COG1198 PriA Primosomal protei 93.0 0.28 6E-06 53.5 7.6 81 248-331 237-318 (730)
365 PRK06321 replicative DNA helic 93.0 0.68 1.5E-05 48.5 10.3 155 46-203 215-389 (472)
366 PRK13833 conjugal transfer pro 93.0 0.26 5.6E-06 48.7 6.7 52 39-90 129-186 (323)
367 COG0464 SpoVK ATPases of the A 93.0 0.79 1.7E-05 48.5 10.9 39 54-93 277-315 (494)
368 PF13177 DNA_pol3_delta2: DNA 93.0 0.27 5.8E-06 43.6 6.2 51 157-213 101-151 (162)
369 COG1484 DnaC DNA replication p 93.0 0.24 5.1E-06 47.4 6.3 47 52-98 104-152 (254)
370 PRK14963 DNA polymerase III su 93.0 0.44 9.6E-06 50.3 8.8 17 56-72 39-55 (504)
371 PRK14950 DNA polymerase III su 92.9 0.74 1.6E-05 49.7 10.7 41 157-203 119-159 (585)
372 PRK13822 conjugal transfer cou 92.9 0.11 2.5E-06 56.2 4.5 58 54-111 225-283 (641)
373 TIGR01243 CDC48 AAA family ATP 92.9 1 2.2E-05 50.1 12.1 31 54-84 488-518 (733)
374 CHL00181 cbbX CbbX; Provisiona 92.9 0.87 1.9E-05 44.4 10.2 19 54-72 60-78 (287)
375 TIGR01425 SRP54_euk signal rec 92.9 3.3 7.1E-05 42.6 14.7 122 55-209 102-230 (429)
376 TIGR00635 ruvB Holliday juncti 92.8 0.88 1.9E-05 44.7 10.4 18 54-71 31-48 (305)
377 cd03115 SRP The signal recogni 92.8 4.4 9.5E-05 36.0 14.1 49 157-209 81-130 (173)
378 PRK04328 hypothetical protein; 92.7 0.086 1.9E-06 50.3 3.0 57 46-103 11-75 (249)
379 PF13481 AAA_25: AAA domain; P 92.7 0.93 2E-05 41.1 9.7 118 52-179 31-162 (193)
380 TIGR02880 cbbX_cfxQ probable R 92.7 0.76 1.7E-05 44.8 9.5 17 54-70 59-75 (284)
381 KOG0701 dsRNA-specific nucleas 92.6 0.088 1.9E-06 61.4 3.3 95 259-353 293-399 (1606)
382 PRK12726 flagellar biosynthesi 92.6 3.2 6.9E-05 41.9 13.7 54 157-214 284-338 (407)
383 PHA03333 putative ATPase subun 92.5 2.8 6.1E-05 45.2 13.9 144 49-207 183-336 (752)
384 TIGR01243 CDC48 AAA family ATP 92.5 0.73 1.6E-05 51.3 10.2 19 53-71 212-230 (733)
385 PRK14723 flhF flagellar biosyn 92.5 2.6 5.6E-05 46.5 14.0 54 159-216 264-318 (767)
386 TIGR02767 TraG-Ti Ti-type conj 92.5 0.16 3.4E-06 54.8 4.7 57 54-110 212-270 (623)
387 PRK14965 DNA polymerase III su 92.4 0.62 1.3E-05 50.2 9.2 49 157-211 118-166 (576)
388 PRK03992 proteasome-activating 92.4 1.3 2.7E-05 45.4 11.1 19 54-72 166-184 (389)
389 TIGR00767 rho transcription te 92.4 0.77 1.7E-05 46.5 9.2 22 50-71 165-186 (415)
390 TIGR01074 rep ATP-dependent DN 92.3 0.28 6.1E-06 54.0 6.6 60 39-100 2-68 (664)
391 PF05127 Helicase_RecD: Helica 92.3 0.2 4.4E-06 44.8 4.5 116 57-204 1-124 (177)
392 TIGR01241 FtsH_fam ATP-depende 92.1 1.3 2.9E-05 46.8 11.3 18 54-71 89-106 (495)
393 PRK11054 helD DNA helicase IV; 92.0 0.5 1.1E-05 51.8 8.1 62 37-100 195-263 (684)
394 PRK09354 recA recombinase A; P 92.0 0.94 2E-05 45.2 9.2 96 46-171 47-151 (349)
395 PRK10867 signal recognition pa 91.9 4.9 0.00011 41.6 14.6 51 56-106 103-160 (433)
396 TIGR00959 ffh signal recogniti 91.9 6.1 0.00013 40.8 15.3 52 55-106 101-159 (428)
397 PRK00440 rfc replication facto 91.8 1.2 2.6E-05 43.9 10.1 17 55-71 40-56 (319)
398 PRK10689 transcription-repair 91.8 1.1 2.4E-05 52.0 10.9 77 257-333 648-729 (1147)
399 TIGR02782 TrbB_P P-type conjug 91.7 0.54 1.2E-05 46.1 7.2 52 39-90 117-174 (299)
400 PRK13894 conjugal transfer ATP 91.7 0.37 8.1E-06 47.6 6.1 52 39-90 133-190 (319)
401 TIGR00678 holB DNA polymerase 91.7 1.3 2.7E-05 40.2 9.2 41 156-202 94-134 (188)
402 PTZ00361 26 proteosome regulat 91.6 1.2 2.7E-05 45.9 10.0 22 53-74 217-238 (438)
403 TIGR01073 pcrA ATP-dependent D 91.6 0.33 7.1E-06 54.0 6.2 63 37-101 3-72 (726)
404 PRK13876 conjugal transfer cou 91.5 0.17 3.7E-06 55.0 3.8 55 54-109 145-200 (663)
405 COG2804 PulE Type II secretory 91.5 0.22 4.8E-06 51.4 4.3 31 39-69 242-274 (500)
406 cd01128 rho_factor Transcripti 91.5 1.1 2.4E-05 42.6 8.9 21 50-70 13-33 (249)
407 TIGR03880 KaiC_arch_3 KaiC dom 91.5 2.1 4.6E-05 39.9 10.8 51 53-104 16-69 (224)
408 KOG1513 Nuclear helicase MOP-3 91.5 0.22 4.7E-06 53.5 4.2 74 301-374 850-934 (1300)
409 COG4962 CpaF Flp pilus assembl 91.4 0.49 1.1E-05 46.5 6.4 57 34-90 153-212 (355)
410 PRK07004 replicative DNA helic 91.4 1.4 3.1E-05 46.0 10.3 143 54-202 214-373 (460)
411 PRK05986 cob(I)alamin adenolsy 91.4 1.5 3.3E-05 39.6 9.2 55 151-208 108-162 (191)
412 KOG0734 AAA+-type ATPase conta 91.4 2.4 5.2E-05 44.1 11.3 62 148-209 386-453 (752)
413 PRK14701 reverse gyrase; Provi 91.4 1.1 2.4E-05 53.8 10.5 78 257-334 121-208 (1638)
414 PRK00080 ruvB Holliday junctio 91.3 0.47 1E-05 47.3 6.5 18 54-71 52-69 (328)
415 COG1219 ClpX ATP-dependent pro 91.2 0.15 3.3E-06 49.3 2.6 19 54-72 98-116 (408)
416 PRK06749 replicative DNA helic 91.2 2 4.4E-05 44.4 11.1 41 46-86 175-222 (428)
417 KOG1513 Nuclear helicase MOP-3 91.2 0.32 7E-06 52.2 5.2 161 38-203 264-454 (1300)
418 TIGR02640 gas_vesic_GvpN gas v 91.1 0.37 8E-06 46.4 5.3 40 45-84 13-52 (262)
419 PRK09302 circadian clock prote 91.1 1 2.2E-05 47.9 9.1 109 46-172 261-377 (509)
420 PF03969 AFG1_ATPase: AFG1-lik 91.0 3.9 8.4E-05 41.3 12.6 17 53-69 62-78 (362)
421 TIGR03499 FlhF flagellar biosy 90.9 1.2 2.5E-05 43.4 8.6 17 54-70 195-211 (282)
422 PHA03368 DNA packaging termina 90.9 0.6 1.3E-05 50.0 6.9 75 23-101 228-307 (738)
423 cd00983 recA RecA is a bacter 90.9 1.2 2.5E-05 44.2 8.6 96 46-171 42-146 (325)
424 COG0470 HolB ATPase involved i 90.9 1.8 3.9E-05 42.7 10.2 45 157-207 108-152 (325)
425 PRK09376 rho transcription ter 90.9 1 2.3E-05 45.4 8.2 21 50-70 166-186 (416)
426 PRK13851 type IV secretion sys 90.9 0.38 8.3E-06 48.0 5.3 42 49-90 158-201 (344)
427 COG0513 SrmB Superfamily II DN 90.8 0.76 1.6E-05 48.8 7.8 69 261-333 102-181 (513)
428 TIGR02785 addA_Gpos recombinat 90.8 0.49 1.1E-05 55.7 6.9 61 38-100 1-67 (1232)
429 KOG0339 ATP-dependent RNA heli 90.7 1.8 3.8E-05 44.6 9.6 71 258-332 295-376 (731)
430 cd00561 CobA_CobO_BtuR ATP:cor 90.7 1.7 3.6E-05 38.3 8.5 52 152-206 89-140 (159)
431 TIGR03345 VI_ClpV1 type VI sec 90.7 1.9 4.2E-05 48.6 11.1 29 42-70 570-613 (852)
432 PHA00350 putative assembly pro 90.7 2.2 4.8E-05 43.4 10.5 24 56-79 4-31 (399)
433 COG3973 Superfamily I DNA and 90.6 0.59 1.3E-05 49.1 6.4 57 52-108 225-290 (747)
434 cd01130 VirB11-like_ATPase Typ 90.6 0.63 1.4E-05 42.1 6.1 33 38-70 9-42 (186)
435 KOG0729 26S proteasome regulat 90.6 3.2 6.9E-05 39.3 10.5 75 16-93 175-250 (435)
436 PRK07773 replicative DNA helic 90.5 1.1 2.3E-05 51.1 8.9 157 44-203 204-377 (886)
437 KOG0347 RNA helicase [RNA proc 90.3 0.68 1.5E-05 48.0 6.4 71 260-334 265-348 (731)
438 TIGR02397 dnaX_nterm DNA polym 90.3 3.7 8.1E-05 41.2 12.1 16 55-70 38-53 (355)
439 PRK13900 type IV secretion sys 90.3 0.48 1E-05 47.2 5.4 41 50-90 157-199 (332)
440 TIGR02012 tigrfam_recA protein 90.3 1.4 3E-05 43.6 8.5 96 46-171 42-146 (321)
441 PRK09087 hypothetical protein; 90.3 3.6 7.9E-05 38.5 11.0 19 53-71 44-62 (226)
442 TIGR03346 chaperone_ClpB ATP-d 90.2 2.5 5.5E-05 47.9 11.7 18 54-71 195-212 (852)
443 KOG2543 Origin recognition com 90.0 2.4 5.2E-05 42.3 9.7 61 158-223 115-175 (438)
444 PF01443 Viral_helicase1: Vira 90.0 0.51 1.1E-05 44.2 5.1 37 56-93 1-37 (234)
445 PRK14954 DNA polymerase III su 90.0 1.2 2.7E-05 48.1 8.5 43 156-204 125-167 (620)
446 COG3267 ExeA Type II secretory 89.9 1.7 3.8E-05 40.9 8.3 37 50-86 47-86 (269)
447 TIGR02238 recomb_DMC1 meiotic 89.8 1.3 2.8E-05 43.8 7.9 43 46-88 84-140 (313)
448 CHL00195 ycf46 Ycf46; Provisio 89.8 2.5 5.4E-05 44.4 10.4 18 54-71 260-277 (489)
449 KOG1001 Helicase-like transcri 89.8 0.057 1.2E-06 58.5 -1.7 118 243-360 521-643 (674)
450 TIGR00602 rad24 checkpoint pro 89.7 1.4 3.1E-05 47.6 8.7 18 55-72 112-129 (637)
451 PF10593 Z1: Z1 domain; Inter 89.7 1.4 3.1E-05 41.6 7.8 89 282-375 110-203 (239)
452 TIGR00708 cobA cob(I)alamin ad 89.7 8.4 0.00018 34.4 12.2 54 151-207 90-143 (173)
453 PRK14971 DNA polymerase III su 89.6 1.2 2.5E-05 48.4 8.0 47 157-209 120-166 (614)
454 TIGR02237 recomb_radB DNA repa 89.6 2 4.3E-05 39.5 8.7 35 53-87 12-49 (209)
455 PRK10865 protein disaggregatio 89.6 3 6.5E-05 47.2 11.5 18 54-71 200-217 (857)
456 PF13671 AAA_33: AAA domain; P 89.5 3.2 7E-05 35.3 9.5 15 56-70 2-16 (143)
457 TIGR01242 26Sp45 26S proteasom 89.5 0.71 1.5E-05 46.7 6.0 19 54-72 157-175 (364)
458 PF01637 Arch_ATPase: Archaeal 89.3 1.9 4E-05 40.0 8.4 17 53-69 20-36 (234)
459 PRK13880 conjugal transfer cou 89.3 0.26 5.6E-06 53.6 2.8 56 54-109 176-233 (636)
460 cd01129 PulE-GspE PulE/GspE Th 89.2 0.87 1.9E-05 43.8 6.1 31 39-69 64-96 (264)
461 KOG0742 AAA+-type ATPase [Post 89.1 1.5 3.3E-05 44.0 7.6 17 54-70 385-401 (630)
462 PRK06647 DNA polymerase III su 88.9 1.9 4.1E-05 46.2 8.9 18 55-72 40-57 (563)
463 cd00268 DEADc DEAD-box helicas 88.8 2.6 5.6E-05 38.4 8.8 74 257-334 68-151 (203)
464 PF05729 NACHT: NACHT domain 88.8 2.1 4.6E-05 37.2 8.0 43 160-202 83-129 (166)
465 COG3598 RepA RecA-family ATPas 88.8 1.9 4.2E-05 42.0 7.8 30 42-71 77-107 (402)
466 TIGR00416 sms DNA repair prote 88.7 4.1 8.8E-05 42.5 11.0 58 45-103 81-146 (454)
467 PRK10733 hflB ATP-dependent me 88.6 2.9 6.3E-05 45.8 10.3 19 54-72 186-204 (644)
468 PRK06305 DNA polymerase III su 88.5 2.6 5.6E-05 44.0 9.4 18 55-72 41-58 (451)
469 KOG0991 Replication factor C, 88.4 1.5 3.2E-05 40.8 6.5 19 54-72 49-67 (333)
470 PF00437 T2SE: Type II/IV secr 88.4 0.51 1.1E-05 45.5 4.0 48 43-90 116-167 (270)
471 COG2805 PilT Tfp pilus assembl 88.2 0.44 9.6E-06 45.9 3.2 15 55-69 127-141 (353)
472 KOG0744 AAA+-type ATPase [Post 88.2 1.1 2.3E-05 43.7 5.7 15 54-68 178-192 (423)
473 CHL00095 clpC Clp protease ATP 88.1 3.4 7.4E-05 46.6 10.8 18 54-71 201-218 (821)
474 PRK08058 DNA polymerase III su 87.9 2.6 5.7E-05 42.0 8.8 51 156-212 108-158 (329)
475 cd01394 radB RadB. The archaea 87.8 3.8 8.1E-05 38.0 9.3 40 46-85 7-54 (218)
476 PLN03187 meiotic recombination 87.8 1.7 3.8E-05 43.4 7.3 42 46-87 114-169 (344)
477 PRK11634 ATP-dependent RNA hel 87.7 1.8 3.9E-05 47.1 8.0 72 258-333 74-156 (629)
478 PRK10436 hypothetical protein; 87.6 1.1 2.3E-05 46.8 5.9 31 39-69 202-234 (462)
479 TIGR02533 type_II_gspE general 87.5 0.93 2E-05 47.7 5.5 31 39-69 226-258 (486)
480 PRK14970 DNA polymerase III su 87.5 3.3 7.2E-05 41.9 9.4 16 55-70 41-56 (367)
481 TIGR03345 VI_ClpV1 type VI sec 87.5 5.6 0.00012 45.0 11.9 30 42-71 191-226 (852)
482 PLN00020 ribulose bisphosphate 87.4 0.91 2E-05 45.4 4.9 32 54-85 149-180 (413)
483 PF05673 DUF815: Protein of un 87.4 8 0.00017 36.5 10.9 96 42-137 34-147 (249)
484 COG1223 Predicted ATPase (AAA+ 87.4 6.5 0.00014 37.3 10.1 38 54-93 152-190 (368)
485 TIGR02655 circ_KaiC circadian 87.3 2.5 5.5E-05 44.6 8.6 58 46-104 9-75 (484)
486 PRK07471 DNA polymerase III su 87.3 6.3 0.00014 39.9 11.1 43 157-205 140-182 (365)
487 TIGR00614 recQ_fam ATP-depende 87.2 1.7 3.7E-05 45.6 7.3 77 258-334 51-135 (470)
488 COG0556 UvrB Helicase subunit 87.0 13 0.00029 38.8 12.9 121 77-211 445-565 (663)
489 KOG1806 DEAD box containing he 87.0 0.95 2.1E-05 50.2 5.1 68 38-105 738-810 (1320)
490 PRK08451 DNA polymerase III su 86.9 2.8 6E-05 44.5 8.5 43 157-205 116-158 (535)
491 TIGR01054 rgy reverse gyrase. 86.7 1.4 2.9E-05 51.5 6.6 77 258-334 121-207 (1171)
492 COG0542 clpA ATP-binding subun 86.1 1 2.2E-05 49.4 4.9 28 42-69 495-537 (786)
493 COG3421 Uncharacterized protei 86.1 0.35 7.7E-06 50.5 1.4 58 295-352 315-384 (812)
494 TIGR03819 heli_sec_ATPase heli 86.1 1.3 2.7E-05 44.4 5.3 52 39-90 163-217 (340)
495 PF01078 Mg_chelatase: Magnesi 86.0 0.8 1.7E-05 42.0 3.5 26 50-75 19-45 (206)
496 COG2812 DnaX DNA polymerase II 86.0 0.9 1.9E-05 47.6 4.3 19 154-172 115-133 (515)
497 TIGR02639 ClpA ATP-dependent C 85.9 1.1 2.3E-05 50.0 5.1 18 55-72 486-503 (731)
498 TIGR01547 phage_term_2 phage t 85.8 4.6 9.9E-05 41.4 9.4 34 56-89 4-43 (396)
499 PRK09361 radB DNA repair and r 85.6 5.9 0.00013 36.9 9.4 41 46-86 11-59 (225)
500 TIGR01420 pilT_fam pilus retra 85.6 2.9 6.3E-05 41.9 7.6 18 53-70 122-139 (343)
No 1
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-95 Score=691.90 Aligned_cols=471 Identities=37% Similarity=0.650 Sum_probs=410.0
Q ss_pred hhHHHHHHHHHhcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 010884 22 EKEALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~~-~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
.......+|+++|||+.|. +.|+.|+..+.++ +||+|+||||+|||||||+|+|..++++||++|+++|++||++.|.
T Consensus 3 ~Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~ 82 (641)
T KOG0352|consen 3 MERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLK 82 (641)
T ss_pred hHHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHH
Confidence 3456788999999999987 8999999998877 5999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChH
Q 010884 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (498)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (498)
.+.+++..+++..+..++..+..++...++.+++||.|||+.+|.+|...|..+++.+.+.++|||||||+++|||||||
T Consensus 83 ~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRP 162 (641)
T KOG0352|consen 83 RLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRP 162 (641)
T ss_pred hcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCe-EEecCCCCCceEEEEEeecchhhHHHHHHHHHHhc--
Q 010884 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-- 256 (498)
Q Consensus 180 ~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~-- 256 (498)
+|.+|+.|++.++++|+++||||+++.+++|+...|.+.+|+ ++..+..|.|++|.+.++....+.+..|.++-...
T Consensus 163 DYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 163 DYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLG 242 (641)
T ss_pred chhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999997 57778899999999999988888888887765321
Q ss_pred -----------CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC
Q 010884 257 -----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (498)
Q Consensus 257 -----------~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p 325 (498)
-.+++||||.||++|+++|-.|...|+++..||+||...+|.++++.|++++++||+||..||||+|+|
T Consensus 243 ~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp 322 (641)
T KOG0352|consen 243 KHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKP 322 (641)
T ss_pred ChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCc
Confidence 246899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHH
Q 010884 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDY 405 (498)
Q Consensus 326 ~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 405 (498)
+||+||||++|+|+..|||++|||||||.++.|.+||+.+|...++++++....+. +.....+...+..+..|.+|++|
T Consensus 323 ~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~akl-rek~~ke~~~k~~I~~F~k~~eF 401 (641)
T KOG0352|consen 323 DVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKL-REKAKKEMQIKSIITGFAKMLEF 401 (641)
T ss_pred ceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHH-HHhcchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988654432 11122333446678889999999
Q ss_pred hhccchhHHHHHhhhCCCCCcccCCCCCCCCCChhhhhHHHHHHHHHHhhcCC-ccceeeccCCCCCCCc---ccccccc
Q 010884 406 CEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNH-FSQIFISSQDMTDGGQ---YSEFWNR 481 (498)
Q Consensus 406 ~~~~~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~ 481 (498)
||..+|||+.|.+|||+..+ .|..+||+|+.|....+.++...+.+....- .++---+..+++++|. +..+-.|
T Consensus 402 CE~~~CRH~~ia~fFgD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~~s~~~~~~~~~~~~~~~~~~g~~gg~~~~~ey 479 (641)
T KOG0352|consen 402 CESARCRHVSIASFFDDTEC--PCKTNCDYCRDPTKTIRNVEAFINSEASTGRSMFRKSASSGESGFDSVYGGGKRGGET 479 (641)
T ss_pred HHHcccchHHHHHhcCCCCC--CCCCCccccCCHHHHHHHHHHHHHhhhhccccccccccCccccccccccccccccccc
Confidence 99999999999999999876 6888999999887655555555554422211 1111122333344332 4566666
Q ss_pred CCCCCCCCCCcccc
Q 010884 482 DDEASGSEEDISDC 495 (498)
Q Consensus 482 ~~~~~~~~~~~~~~ 495 (498)
+++..+|+|+.-|+
T Consensus 480 ~~g~~gs~d~s~d~ 493 (641)
T KOG0352|consen 480 EDELLSAASTSKDA 493 (641)
T ss_pred cccccCCCCcchhh
Confidence 66655555554443
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.8e-91 Score=709.89 Aligned_cols=400 Identities=46% Similarity=0.817 Sum_probs=369.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
+.+...|+++||++.|||.|.++|.+++.|+|+++.+|||+|||+|||+|++...|.+|||+|+++||+||+++++..|+
T Consensus 3 ~~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi 82 (590)
T COG0514 3 EEAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGI 82 (590)
T ss_pred hHHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHH
Q 010884 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (498)
.+.+++|..+..++..+...+..+. +++||.+||.+.++.|++.+. ...+.++|||||||+++|||||||+|..
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHH
Confidence 9999999999999999999999886 999999999999999888877 3459999999999999999999999999
Q ss_pred HHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEE
Q 010884 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263 (498)
Q Consensus 184 l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IV 263 (498)
++.++..+|++|+++||||+++.+..+|.+.|++..+.++..+++|||++|.++.+.....++..+.+ +.....+++||
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GII 235 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGII 235 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999988643333433332 22456677999
Q ss_pred EeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHH
Q 010884 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (498)
Q Consensus 264 f~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~ 343 (498)
||.||+.++.++++|...|+.+..|||||+.++|..++++|.+++++|+|||.|||||||+||||+||||++|.|+++|+
T Consensus 236 Yc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYy 315 (590)
T COG0514 236 YCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYY 315 (590)
T ss_pred EEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHHhhccchhHHHHHhhhCCC
Q 010884 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423 (498)
Q Consensus 344 Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~Crr~~~~~~f~~~ 423 (498)
|++|||||||.++.|+++|++.|....+.++....+ ..+..+.....+.+|..||++..|||..+++||||.
T Consensus 316 QE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~ 387 (590)
T COG0514 316 QETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGED 387 (590)
T ss_pred HHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCcc
Confidence 999999999999999999999999999988887543 233445666889999999999999999999999998
Q ss_pred CCcccCCCCCCCCCChh
Q 010884 424 IPVSLCKNSCDACKHPN 440 (498)
Q Consensus 424 ~~~~~c~~~Cd~c~~~~ 440 (498)
.+..|.. ||+|.++.
T Consensus 388 -~~~~c~~-c~~c~~~~ 402 (590)
T COG0514 388 -EPEPCGN-CDNCLDTP 402 (590)
T ss_pred -ccccccC-CCcccCcc
Confidence 6678985 99998865
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.4e-84 Score=691.56 Aligned_cols=420 Identities=41% Similarity=0.728 Sum_probs=373.7
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHH
Q 010884 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l 98 (498)
.+++.+.+...++.+||+..|||.|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||+||+..+
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCCC
Q 010884 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (498)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~f 177 (498)
...|+.+..++++........++..+......++++|+|||.+.... ++..+..+.....+.+||||||||+++|||+|
T Consensus 521 ~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 521 LQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred HhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 99999999999999988888888777664456999999999988654 45555555556679999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhc-
Q 010884 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256 (498)
Q Consensus 178 r~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~- 256 (498)
||+|..|..++..+|++|+++||||+++.+..++...|++..+.++..+++|||++|.+..+. ......+..+++..
T Consensus 601 RpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~~ 678 (1195)
T PLN03137 601 RPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKENH 678 (1195)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999988654 23355677777643
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p 336 (498)
...++||||+|++.|+.++..|...|+.+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++||||++|
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCc------chhhhhhhHHHHHHHHHHHHHhhcc-
Q 010884 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS------FSTRERSSKKSISDFSQMVDYCEGS- 409 (498)
Q Consensus 337 ~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~m~~~~~~~- 409 (498)
+|++.|+||+|||||+|++|.|++||+..|...++.++.......... ........+..++.|.+|+.||++.
T Consensus 759 kSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~ 838 (1195)
T PLN03137 759 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEV 838 (1195)
T ss_pred CCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChH
Confidence 999999999999999999999999999999999999987543221110 0111122345678899999999996
Q ss_pred chhHHHHHhhhCCCCCcccCCCCCCCCCChh
Q 010884 410 GCRRKKILESFGEQIPVSLCKNSCDACKHPN 440 (498)
Q Consensus 410 ~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~~~ 440 (498)
.|||+++|.||||.+....|+..||+|..+.
T Consensus 839 ~CRR~~lL~yFGE~~~~~~C~~~CDnC~~~~ 869 (1195)
T PLN03137 839 DCRRFLQLVHFGEKFDSTNCKKTCDNCSSSK 869 (1195)
T ss_pred hhHHHHHHHHcccccCccCCCCCCCCCCCCC
Confidence 8999999999999876668998899998754
No 4
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-83 Score=691.43 Aligned_cols=434 Identities=48% Similarity=0.820 Sum_probs=390.1
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~g 102 (498)
.++....++..||+..|||.|.++|.+++.|+|++|.||||+|||+|||+|++..++.+|||+|+++||+||+..|...+
T Consensus 249 t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 249 TKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred chHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcC
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCCChHHH
Q 010884 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (498)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (498)
|++.++++.++...+..++..+..+.+.++++|+|||.+...+ +...+..+...+.+.++|||||||+++|||||||+|
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 9999999999999999999999999889999999999887765 445667777778899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccE
Q 010884 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261 (498)
Q Consensus 182 ~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 261 (498)
.+++.++..+|.+|+|+||||++..++.++.+.|++.++.++..+|+|+|++|.|..+......+..+...-...+..++
T Consensus 409 k~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~ 488 (941)
T KOG0351|consen 409 KRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSG 488 (941)
T ss_pred HHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999987534444444444455678899
Q ss_pred EEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHH
Q 010884 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341 (498)
Q Consensus 262 IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~ 341 (498)
||||.++++|++++..|+..|+++..||+||++++|..|++.|..++++|+|||.|||||||+||||+||||++|+|++.
T Consensus 489 IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~ 568 (941)
T KOG0351|consen 489 IIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEG 568 (941)
T ss_pred EEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhH-HHHHHHHHHHHHhhc-cchhHHHHHhh
Q 010884 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK-KSISDFSQMVDYCEG-SGCRRKKILES 419 (498)
Q Consensus 342 y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~m~~~~~~-~~Crr~~~~~~ 419 (498)
|||++|||||||.++.|++||+..|...++.++...... .. ..+ .....+.+|+.||++ +.|||+.++.|
T Consensus 569 YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~-~~-------~~~~~~~~~l~~~~~yCen~t~crr~~~l~~ 640 (941)
T KOG0351|consen 569 YYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRL-SG-------VKKFTRLLELVQVVTYCENETDCRRKQILEY 640 (941)
T ss_pred HHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccc-cc-------hhhccchhhHHHHHHhhcCccchhHHHHHHh
Confidence 999999999999999999999999999999999887211 11 112 356788999999995 68999999999
Q ss_pred hCCCCCcccCC--CCCCCCCChhhhhHHHHHHHHHHhhcCCccceee
Q 010884 420 FGEQIPVSLCK--NSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI 464 (498)
Q Consensus 420 f~~~~~~~~c~--~~Cd~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (498)
||+.+....|. .+||+|.....+...+.+++....+..+....+.
T Consensus 641 fge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~ 687 (941)
T KOG0351|consen 641 FGEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYT 687 (941)
T ss_pred cccccchhhccCCchHHHhhcccccchHHHHHHHHHHHHhhhheeee
Confidence 99999888999 7999999987666666666555544444444443
No 5
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.4e-81 Score=583.89 Aligned_cols=407 Identities=41% Similarity=0.761 Sum_probs=381.5
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~ 96 (498)
.+.+|++.+..+.|++.|.+..|||.|.++|++.+.|.|+++++|||+|||+||++|+|...+.+|||+|+++||++|..
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil 152 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQIL 152 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccC-hhhHHHHHhhhhcCCccEEEEeccccccccCC
Q 010884 97 GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (498)
Q Consensus 97 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (498)
.|+.+||.+..++...+..+...+...+......++++|+|||.++. ..|+++|.+....+.+.+|.|||+||.++|||
T Consensus 153 ~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwgh 232 (695)
T KOG0353|consen 153 QLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGH 232 (695)
T ss_pred HHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCc
Confidence 99999999999999999888888888888888889999999998875 46899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecch-hhHHHHHHHHHH
Q 010884 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLCSVLK 254 (498)
Q Consensus 176 ~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~-~~~~~~l~~~l~ 254 (498)
||||+|..|+-+.+.+++.|+++||||++..+..+....|++.....++.+|+|||++|.|+.++.. ++.++++..+++
T Consensus 233 dfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~ 312 (695)
T KOG0353|consen 233 DFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIK 312 (695)
T ss_pred ccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 456777888875
Q ss_pred h-cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEe
Q 010884 255 A-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333 (498)
Q Consensus 255 ~-~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~ 333 (498)
. ..+..+||||-++++|+.++..|+..|+.+..||+.|.+.+|.-+.+.|..|+++|+|||.+||||||+||||+|||.
T Consensus 313 ~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 313 GDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec
Confidence 4 567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHH-------------------------------------------HHhhcCCCCCCceEEEEEccchHHHH
Q 010884 334 NIPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDRRRM 370 (498)
Q Consensus 334 ~~p~s~~~y~Q-------------------------------------------~~GRagR~g~~~~~~~~~~~~d~~~~ 370 (498)
.+|+|+++||| ++|||||++.++.|++||...|..++
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH
Confidence 99999999999 89999999999999999999998888
Q ss_pred HHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHHhhc-cchhHHHHHhhhCCCCCcccCCCCCCCCCC
Q 010884 371 EFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDACKH 438 (498)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~-~~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~ 438 (498)
..++... ...++.|..|+.||.. +.|||..+.+||+|.+.+..|+.+||+|-.
T Consensus 473 ssmv~~e---------------~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~ 526 (695)
T KOG0353|consen 473 SSMVQME---------------NTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCK 526 (695)
T ss_pred HHHHHHH---------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhcc
Confidence 7766532 2456788999999988 589999999999999999999999999965
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-75 Score=625.01 Aligned_cols=402 Identities=42% Similarity=0.741 Sum_probs=360.6
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 010884 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
++..+.....|++.|||..|||+|+++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~ 86 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLL 86 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHH
Confidence 45556667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChH
Q 010884 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (498)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (498)
..|+.+..+++.........+...+..+. ++++|+|||.+.+..+...+.. ..+++|||||||++++||++|||
T Consensus 87 ~~gi~~~~~~s~~~~~~~~~~~~~~~~g~--~~il~~tPe~l~~~~~~~~l~~----~~l~~iVIDEaH~i~~~G~~fr~ 160 (607)
T PRK11057 87 ANGVAAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERLMMDNFLEHLAH----WNPALLAVDEAHCISQWGHDFRP 160 (607)
T ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEEChHHhcChHHHHHHhh----CCCCEEEEeCccccccccCcccH
Confidence 99999999999988887777777776654 8999999999988776665543 35899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCc
Q 010884 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259 (498)
Q Consensus 180 ~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~ 259 (498)
.|..|..++..+|+.|++++|||+++.+..++...+++.+|.+...+++++|+.|.+.... .....+..++....+.
T Consensus 161 ~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~ 237 (607)
T PRK11057 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRGK 237 (607)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999998876553 3456677777777788
Q ss_pred cEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCH
Q 010884 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSM 339 (498)
Q Consensus 260 ~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~ 339 (498)
++||||+|++.|+.++..|.+.|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++||||++|.|+
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~ 317 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHHhhccchhHHHHHhh
Q 010884 340 EAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILES 419 (498)
Q Consensus 340 ~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~Crr~~~~~~ 419 (498)
+.|+||+|||||+|.+|.|++||++.|...++.++...... .........+..|..||++..|||+++++|
T Consensus 318 ~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~Crr~~~l~y 388 (607)
T PRK11057 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAG---------QQQDIERHKLNAMGAFAEAQTCRRLVLLNY 388 (607)
T ss_pred HHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 99999999999999999999999999999888887653221 111233457889999999999999999999
Q ss_pred hCCCCCcccCCCCCCCCCChhh
Q 010884 420 FGEQIPVSLCKNSCDACKHPNL 441 (498)
Q Consensus 420 f~~~~~~~~c~~~Cd~c~~~~~ 441 (498)
|||... ..|+ .||+|.++..
T Consensus 389 f~e~~~-~~c~-~cd~c~~~~~ 408 (607)
T PRK11057 389 FGEGRQ-EPCG-NCDICLDPPK 408 (607)
T ss_pred hCCCCC-CCCC-CCCCCCCccc
Confidence 999864 3576 7999998653
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-75 Score=606.86 Aligned_cols=394 Identities=47% Similarity=0.822 Sum_probs=349.5
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 010884 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (498)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (498)
.|++.|||.+|||+|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++|+.||+..++.+|+.+..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (498)
++.........+...+..+. ++++|+|||.+.+.. +...+. ....+++|||||||++++||++||+.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 99988887777777775554 899999999988765 444442 456699999999999999999999999999999
Q ss_pred HHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHH-hcCCccEEEEeC
Q 010884 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (498)
Q Consensus 188 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~-~~~~~~~IVf~~ 266 (498)
+..+|++|+++||||+++.+..++...+++..+.++..+++++|+.+.+..+.. ..+..+..++. ..++.++||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999999999999999999999999999999999999999998887642 45667777776 455667799999
Q ss_pred ccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHH
Q 010884 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (498)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (498)
|++.|+.++..|.+.|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++||||++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHHhhccchhHHHHHhhhCCCCC-
Q 010884 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIP- 425 (498)
Q Consensus 347 GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~Crr~~~~~~f~~~~~- 425 (498)
|||||+|.+|.|++||++.|...++.++....... ........++.|..|++...|||+.+++|||+...
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~~ 385 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ---------QRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQLN 385 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHHHhccccCHHHHHHHHcCCcccc
Confidence 99999999999999999999999998887543211 11122345677778888889999999999999532
Q ss_pred ----cccCCCCCCCCCC
Q 010884 426 ----VSLCKNSCDACKH 438 (498)
Q Consensus 426 ----~~~c~~~Cd~c~~ 438 (498)
...|..+||+|..
T Consensus 386 ~~~~~~~~~~~C~~C~~ 402 (470)
T TIGR00614 386 KSFGIMGTEKCCDNCCK 402 (470)
T ss_pred cccccccCCCCCCCCCC
Confidence 2346667888864
No 8
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.7e-75 Score=623.80 Aligned_cols=395 Identities=42% Similarity=0.743 Sum_probs=358.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (498)
...|++.|||++|||+|.++|++++.|+|++++||||+|||+||++|++...+.++||+|+++|+.||+..++.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 010884 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (498)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (498)
.+++.........+...+..+. ++++|+|||.+.++.+...+. ...+++||||||||+++||++|||.|..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l~----~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNMLQ----RIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHHh----cCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9999999888888887777665 899999999998877655443 3469999999999999999999999999999
Q ss_pred HHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeC
Q 010884 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (498)
Q Consensus 187 l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~ 266 (498)
++..+|+.|++++|||+++.+..++...+++..+..+..+++++|+.+.+.... .+...+.+++....+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999988999999999999887653 45667788887776788999999
Q ss_pred ccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHH
Q 010884 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (498)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (498)
|++.++.+++.|...|+++..|||+|+.++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|++.|+|++
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHHhhccchhHHHHHhhhCCCCCc
Q 010884 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPV 426 (498)
Q Consensus 347 GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~Crr~~~~~~f~~~~~~ 426 (498)
|||||+|+++.|+++|++.|...++.++...... ..........+.+|..||++..|||.++++|||+.. .
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~~f~~~~-~ 383 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEAD--------DDYKQIEREKLRAMIAYCETQTCRRAYILRYFGENE-V 383 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCCc--------HHHHHHHHHHHHHHHHHHcccccHhHHHHHhcCCCC-C
Confidence 9999999999999999999999998888653321 112233456788999999999999999999999874 3
Q ss_pred ccCCCCCCCCCChh
Q 010884 427 SLCKNSCDACKHPN 440 (498)
Q Consensus 427 ~~c~~~Cd~c~~~~ 440 (498)
..|+ .||+|.++.
T Consensus 384 ~~c~-~cd~c~~~~ 396 (591)
T TIGR01389 384 EPCG-NCDNCLDPP 396 (591)
T ss_pred CCCC-CCCCCCCCC
Confidence 4686 799998754
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-53 Score=439.44 Aligned_cols=342 Identities=20% Similarity=0.249 Sum_probs=272.7
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-------------CCCeE
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPGIV 81 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-------------~~~~~ 81 (498)
..|..+++++.+.+.|.. +||..|+|+|.++|+.++.|+|++++||||+|||++|++|++. ....+
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 467788999999999997 8999999999999999999999999999999999999999873 13579
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcC
Q 010884 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (498)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~ 157 (498)
||++||++|+.|+.+.+..+ ++.+..+.++........ .+. ...+++++||+.+.... ........
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~---~~~~IlV~TP~~l~~~l----~~~~~~l~ 156 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLE---SGVDILIGTTGRLIDYA----KQNHINLG 156 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hhc---CCCCEEEECHHHHHHHH----HcCCcccc
Confidence 99999999999998877653 677777766655443322 222 13678888877653211 01233456
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC---CCCCc
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPN 231 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~n 231 (498)
.++++||||||++.+|| |...+. .+....| ..+.+++|||++..+.......+ .+|..+... ....+
T Consensus 157 ~v~~lViDEad~l~~~~--f~~~i~---~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~~~~~~~~~ 229 (423)
T PRK04837 157 AIQVVVLDEADRMFDLG--FIKDIR---WLFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVEPEQKTGHR 229 (423)
T ss_pred cccEEEEecHHHHhhcc--cHHHHH---HHHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEcCCCcCCCc
Confidence 69999999999999998 555444 3444454 45579999999998877555544 444433221 11233
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeE
Q 010884 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (498)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (498)
+...+... ....+...|..++......++||||++++.|+.++..|...|+++..+||++++++|..+++.|++|+++|
T Consensus 230 i~~~~~~~-~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~v 308 (423)
T PRK04837 230 IKEELFYP-SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDI 308 (423)
T ss_pred eeEEEEeC-CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcE
Confidence 33333322 23567778888887776788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHH
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
||||+++++|||+|+|++||||++|.+++.|+||+||+||.|+.|.+++|+++.|...+..+.+
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877776644
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-54 Score=432.00 Aligned_cols=343 Identities=26% Similarity=0.378 Sum_probs=278.6
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------------CCeEE
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVL 82 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------------~~~~l 82 (498)
..|..+++++.+...|+. -||..|+|+|.+.|+.++.|+|++..|.||+||||+|++|++.+ .+++|
T Consensus 91 ~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred hhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 367778889999999998 69999999999999999999999999999999999999999742 56799
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhh--hc
Q 010884 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SR 156 (498)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~--~~ 156 (498)
|++|||+|+.|....+.++ ++...++.++.+...... ++..+ +++ .++||+++..+.+.. ++
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~---~l~~g---vdi------viaTPGRl~d~le~g~~~l 237 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLR---DLERG---VDV------VIATPGRLIDLLEEGSLNL 237 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHH---HHhcC---CcE------EEeCChHHHHHHHcCCccc
Confidence 9999999999999988885 444667777766554332 23332 455 566777776665443 45
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC-C----CCC
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F----NRP 230 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~----~r~ 230 (498)
.++.++|+||||+|+++| |++..++| +... -|..|.+++|||++..+.......+. ++..+... . ...
T Consensus 238 ~~v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~~ 311 (519)
T KOG0331|consen 238 SRVTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKANH 311 (519)
T ss_pred cceeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhhc
Confidence 579999999999999998 89877776 3333 24558999999999999887777666 55443332 2 123
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhc---CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcC
Q 010884 231 NLFYEVRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (498)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~---~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (498)
++...+...+ ...+...|..+|... ..+++||||+|++.|++|+..|+..++++..+||+.++.+|..+++.|++|
T Consensus 312 ~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 312 NIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred chhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC
Confidence 3333333333 344555566665443 567899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 308 ~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
+..|||||+++++|+|+|+|++||+||+|.++++|+||+||+||+|+.|.+++||+..+......+.+..
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777665543
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.6e-52 Score=441.11 Aligned_cols=344 Identities=23% Similarity=0.321 Sum_probs=269.6
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----------CCeEEE
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLV 83 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-----------~~~~lv 83 (498)
..|.++.+.+.+.+.|++ .||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. .+.+||
T Consensus 130 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 345556777899999997 79999999999999999999999999999999999999998742 457999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH-HhhhhcCC
Q 010884 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGL 158 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l-~~~~~~~~ 158 (498)
|+||++|+.|+.+.+++++ +......++....... ..+.. ..+++++||+.+.. .+ .....+..
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~---~~~IlVaTPgrL~d-----~l~~~~~~l~~ 277 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRR---GVEILIACPGRLID-----FLESNVTNLRR 277 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHc---CCCEEEECHHHHHH-----HHHcCCCChhh
Confidence 9999999999999988864 4455555554443322 22322 26787777765431 11 12233556
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC-C---CCCceEE
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F---NRPNLFY 234 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~---~r~ni~~ 234 (498)
+++|||||||++.+|| |++.+..+.. ...++.+++++|||++..+...... +....+..+..+ . ...++..
T Consensus 278 v~~lViDEAd~mld~g--f~~~i~~il~--~~~~~~q~l~~SAT~p~~v~~l~~~-l~~~~~v~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 278 VTYLVLDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLMWSATWPKEVQSLARD-LCKEEPVHVNVGSLDLTACHNIKQ 352 (545)
T ss_pred CcEEEeehHHhhhhcc--hHHHHHHHHH--hCCCCCeEEEEEeCCCHHHHHHHHH-HhccCCEEEEECCCccccCCCeeE
Confidence 8999999999999998 7776666532 2336889999999999887654333 333344433221 1 1234443
Q ss_pred EEEeecchhhHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEE
Q 010884 235 EVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (498)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 312 (498)
.+.... ...+...|..++... ...++||||++++.|+.++..|...|+.+..+||++++++|..+++.|++|+.+||
T Consensus 353 ~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~IL 431 (545)
T PTZ00110 353 EVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIM 431 (545)
T ss_pred EEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEE
Confidence 333322 234566666666553 46789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 313 vaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
|||+++++|||+|+|++||||++|.+++.|+||+||+||.|+.|.+++|+++.|...++.+++.
T Consensus 432 VaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 432 IATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred EEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877766554
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.8e-52 Score=432.10 Aligned_cols=343 Identities=22% Similarity=0.285 Sum_probs=275.1
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~~ 88 (498)
..|..+++.+.+.+.|.. +||..|+|+|.+||+.++.|+|++++||||+|||++|++|++.. ...+||++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 457788899999999997 79999999999999999999999999999999999999999853 23689999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEE
Q 010884 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (498)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (498)
+|+.|+.+.++.+ ++.+..+.++........ .+. ...+++++||+.+...-. ........+++||
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~---~~~~IvV~Tp~rl~~~l~----~~~~~l~~l~~lV 152 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLE---HGAHIIVGTPGRILDHLR----KGTLDLDALNTLV 152 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---Hhc---CCCCEEEEChHHHHHHHH----cCCccHHHCCEEE
Confidence 9999999888864 456666666665544322 222 236788777765532110 1122345689999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEec--CCCCCceEEEEEeec
Q 010884 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKD 240 (498)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r~ni~~~v~~~~ 240 (498)
+||||++.++| |.+.+. .+...+| ..+++++|||+++......... +.+|..+.. ....+++...+....
T Consensus 153 iDEad~~l~~g--~~~~l~---~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~i~~~~~~~~ 225 (460)
T PRK11776 153 LDEADRMLDMG--FQDAID---AIIRQAPARRQTLLFSATYPEGIAAISQRF--QRDPVEVKVESTHDLPAIEQRFYEVS 225 (460)
T ss_pred EECHHHHhCcC--cHHHHH---HHHHhCCcccEEEEEEecCcHHHHHHHHHh--cCCCEEEEECcCCCCCCeeEEEEEeC
Confidence 99999999988 665544 4445554 6789999999998876544333 344543322 223333443333333
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc
Q 010884 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (498)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~ 320 (498)
. ..+...+..++......++||||+|++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 226 ~-~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~r 304 (460)
T PRK11776 226 P-DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAAR 304 (460)
T ss_pred c-HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 2 457888888888777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
|||+|++++||+|++|.+++.|+||+||+||.|+.|.+++++.+.|...++.+.+.
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~ 360 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDY 360 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887777554
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.6e-52 Score=439.12 Aligned_cols=345 Identities=16% Similarity=0.213 Sum_probs=275.2
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-------------CCeEE
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVL 82 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-------------~~~~l 82 (498)
.|..+.+.+.+.+.|.+ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.+ ...+|
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 57788899999999997 89999999999999999999999999999999999999998742 25799
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCC
Q 010884 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL 158 (498)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~ 158 (498)
||+||++|+.|+.+.+..+ ++.+..+.++........... ...+|+++||+.+....... .......
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~------~~~dIiV~TP~rL~~~l~~~---~~~~l~~ 159 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ------QGVDVIIATPGRLIDYVKQH---KVVSLHA 159 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh------CCCCEEEECHHHHHHHHHhc---cccchhh
Confidence 9999999999999998875 556667777666554433222 13678888887653211100 1223455
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-CCCCCceEE
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFY 234 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ni~~ 234 (498)
+++|||||||++.+|| |...+. .+...+| ..+++++|||++..+.......+.......+.. .....++..
T Consensus 160 v~~lViDEAh~lld~g--f~~~i~---~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q 234 (572)
T PRK04537 160 CEICVLDEADRMFDLG--FIKDIR---FLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQ 234 (572)
T ss_pred eeeeEecCHHHHhhcc--hHHHHH---HHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeE
Confidence 8899999999999988 554444 4445555 678999999999988776555443221122211 122233333
Q ss_pred EEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEE
Q 010884 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (498)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlva 314 (498)
.+... ....++..+..++......++||||+|++.++.+++.|.+.|+.+..|||+|++.+|..+++.|++|+++||||
T Consensus 235 ~~~~~-~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVa 313 (572)
T PRK04537 235 RIYFP-ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVA 313 (572)
T ss_pred EEEec-CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 33332 23567777888888777788999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
|+++++|||+|+|++||||++|.+++.|+||+||+||.|..|.+++|++..+...+..+.+.
T Consensus 314 Tdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 314 TDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred ehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888777776554
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.3e-52 Score=429.78 Aligned_cols=342 Identities=21% Similarity=0.288 Sum_probs=269.5
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------------CCeEEE
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------------~~~~lv 83 (498)
.|+.+.+++.+.+.|.+ +||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. ...+||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 35677888999999998 79999999999999999999999999999999999999998742 136999
Q ss_pred eCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCc
Q 010884 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l 159 (498)
|+||++|+.|+.+.++.+ ++....+.++........ .+. ...+|+++||+.+..... ........+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~---~~~~IiV~TP~rL~~~~~----~~~~~l~~v 150 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR---GGVDVLVATPGRLLDLEH----QNAVKLDQV 150 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc---CCCcEEEEChHHHHHHHH----cCCcccccc
Confidence 999999999999998874 455555665555443221 111 236888888886633211 122345668
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEe---cCCCCCceEEE
Q 010884 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFYE 235 (498)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~~r~ni~~~ 235 (498)
++|||||||++.+|| |... +..+...+| ..+++++|||+++.+.......+ .++..+. .....+++...
T Consensus 151 ~~lViDEah~ll~~~--~~~~---i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 151 EILVLDEADRMLDMG--FIHD---IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred eEEEeecHHHHhccc--cHHH---HHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEecccccccceeEE
Confidence 999999999999998 4433 344445554 67899999999988765443333 3443322 12233444444
Q ss_pred EEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEe
Q 010884 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (498)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT 315 (498)
+...+. ..+...+..++......++||||+++..++.+++.|.+.|+.+..|||++++++|..+++.|++|+++|||||
T Consensus 224 ~~~~~~-~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 224 VHFVDK-KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEcCH-HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 433322 3445556666666666789999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
+++++|||+|+|++||||++|.+++.|+||+||+||+|..|.+++++...|...++.+.+.
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877766554
No 15
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-52 Score=396.43 Aligned_cols=351 Identities=23% Similarity=0.287 Sum_probs=287.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeE
Q 010884 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIV 81 (498)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~ 81 (498)
++...+...|.++.+.+++.+++++ .|+..|+++|.++||.++.|+||+..|.||||||.+|.+|++++ ...+
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 3446678889999999999999998 79999999999999999999999999999999999999999853 4679
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhh
Q 010884 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIH 154 (498)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~ 154 (498)
+|++|+|+|+.|..+.+..+ |+.+..+.++......... ...+|++ +++|||.+.... +..
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~----L~kkPhi--------lVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ----LSKKPHI--------LVATPGRLWDHLENTKGF 200 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHH----hhcCCCE--------EEeCcHHHHHHHHhccCc
Confidence 99999999999999998885 6677777777665543322 2333333 556777554442 234
Q ss_pred hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC---CC
Q 010884 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RP 230 (498)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ 230 (498)
+...++++|+|||+++++. +|.+....| +..+ +..+.+++|||++..+.+.. ...+.+|..+..+.. -+
T Consensus 201 ~le~lk~LVlDEADrlLd~--dF~~~ld~I---Lk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDM--DFEEELDYI---LKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred cHHHhHHHhhchHHhhhhh--hhHHHHHHH---HHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchH
Confidence 4556889999999999985 477666555 4444 48899999999999998743 556777776654432 12
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCe
Q 010884 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (498)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (498)
++...+.+... ..|-..|..++++..+.++||||+|...+..++-.|+..|+.+..+||.|++..|...++.|++|...
T Consensus 274 ~lkQ~ylfv~~-k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~ 352 (476)
T KOG0330|consen 274 HLKQTYLFVPG-KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS 352 (476)
T ss_pred HhhhheEeccc-cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc
Confidence 22222222211 34556788888888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhccc
Q 010884 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (498)
Q Consensus 311 vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (498)
|||||+++++|+|+|.|++|||||+|.+..+|+||+||+||.|++|.++.+++..|.+.+.+|......
T Consensus 353 iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 353 ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGK 421 (476)
T ss_pred EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999988887765543
No 16
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.2e-51 Score=425.04 Aligned_cols=343 Identities=23% Similarity=0.314 Sum_probs=276.4
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC----------CCeEEEeC
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~----------~~~~lvl~ 85 (498)
.|+.+.+.+.+.+.|++ .||..|+++|.++|++++.|+|++++||||+|||++|++|++.. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 46778899999999998 79999999999999999999999999999999999999999742 35899999
Q ss_pred cHHHHHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccE
Q 010884 86 PLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (498)
Q Consensus 86 P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~ 161 (498)
|+++|+.|+.+.+.. .++.+..+.++.......... .. ..+|+++||+.+.... .........+++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~--~~~IlV~Tp~rl~~~~----~~~~~~~~~v~~ 150 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SE--NQDIVVATPGRLLQYI----KEENFDCRAVET 150 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cC--CCCEEEEChHHHHHHH----HcCCcCcccCCE
Confidence 999999998887766 366777777776665443322 12 3678888877553211 012223456899
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC---CCCCceEEEEEe
Q 010884 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRY 238 (498)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ni~~~v~~ 238 (498)
|||||||++.+|| |...+..+... .....++++||||++.....++...+. .++..+... ..+.++...+..
T Consensus 151 lViDEah~~l~~~--~~~~~~~i~~~--~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~~~~ 225 (434)
T PRK11192 151 LILDEADRMLDMG--FAQDIETIAAE--TRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQWYYR 225 (434)
T ss_pred EEEECHHHHhCCC--cHHHHHHHHHh--CccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEEEEE
Confidence 9999999999998 66666555322 223578999999998776666666553 445443322 233445444444
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc
Q 010884 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (498)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~ 318 (498)
.+....+...|..+++.....++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 226 ~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~ 305 (434)
T PRK11192 226 ADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVA 305 (434)
T ss_pred eCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 44445677788888877667889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHH
Q 010884 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (498)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~ 374 (498)
++|||+|+|++||||++|.|.+.|+||+||+||+|..|.+++++...|...+..+.
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877665544
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-51 Score=429.56 Aligned_cols=348 Identities=18% Similarity=0.243 Sum_probs=274.6
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-------------CC
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PG 79 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-------------~~ 79 (498)
....|.++.+++.+.++|.+ +||..++++|.++|+.++.|+|+++.+|||+|||++|++|++.. ..
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34567778899999999998 89999999999999999999999999999999999999998742 35
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhh
Q 010884 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (498)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~ 155 (498)
++|||+||++|+.|+.+.++.+ ++.+..+.++....... ..+... ..+++++||+++... .. .....
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~Ll~~--~~--~~~~~ 234 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRLLDF--NQ--RGEVH 234 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHHHHH--HH--cCCcc
Confidence 7999999999999999988874 56666666665443322 222222 368888888876321 10 11233
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC---CCCCce
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNL 232 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ni 232 (498)
...+++|||||||++.++| |.+.+..+.......++.+++++|||.+..+.......+ .++..+... ...+++
T Consensus 235 l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 310 (475)
T PRK01297 235 LDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT--TDPAIVEIEPENVASDTV 310 (475)
T ss_pred cccCceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc--cCCEEEEeccCcCCCCcc
Confidence 5668999999999999987 666555554333223357899999999888766444433 344443221 122333
Q ss_pred EEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEE
Q 010884 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (498)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 312 (498)
...+.... ..++...+..++......++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+++||
T Consensus 311 ~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vL 389 (475)
T PRK01297 311 EQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389 (475)
T ss_pred cEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEE
Confidence 33332222 24567777888877777789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHH
Q 010884 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 313 vaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
|||+++++|||+|++++||+|++|.|..+|+||+|||||.|+.|.+++|++.+|...+..+.+
T Consensus 390 vaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 390 VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred EEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988777666544
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.9e-52 Score=433.94 Aligned_cols=343 Identities=22% Similarity=0.315 Sum_probs=264.3
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-------------CCCeE
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPGIV 81 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-------------~~~~~ 81 (498)
..|..+.+.+.+.+.|++ .||..|+|+|.++|+.++.|+|++++||||+|||++|++|++. .++.+
T Consensus 121 ~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred cCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 345567788999999987 7999999999999999999999999999999999999999874 24579
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcC
Q 010884 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (498)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~ 157 (498)
|||+||++|+.|+.+.++.+ ++....+.++....... ..+.. ..+++++||+.+..-. . .......
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~---~~~IiV~TPgrL~~~l--~--~~~~~l~ 269 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ---GVELIVGTPGRLIDLL--S--KHDIELD 269 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC---CCCEEEECHHHHHHHH--H--cCCccch
Confidence 99999999999887777764 34444444444333221 12222 3678777777553210 0 1123456
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-CCCCCc--eEE
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN--LFY 234 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~n--i~~ 234 (498)
.+.+|||||||++.+|| |++.+.. +...+++.|++++|||+++.+.... ..+ +.++..+.. ...+++ +..
T Consensus 270 ~v~~lViDEad~ml~~g--f~~~i~~---i~~~l~~~q~l~~SATl~~~v~~l~-~~~-~~~~~~i~~~~~~~~~~~v~q 342 (518)
T PLN00206 270 NVSVLVLDEVDCMLERG--FRDQVMQ---IFQALSQPQVLLFSATVSPEVEKFA-SSL-AKDIILISIGNPNRPNKAVKQ 342 (518)
T ss_pred heeEEEeecHHHHhhcc--hHHHHHH---HHHhCCCCcEEEEEeeCCHHHHHHH-HHh-CCCCEEEEeCCCCCCCcceeE
Confidence 68999999999999998 7765544 4556688999999999999876533 322 344544332 223332 222
Q ss_pred EEEeecchhhHHHHHHHHHHhcC--CccEEEEeCccchHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHHcCCCeE
Q 010884 235 EVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (498)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~--~~~~IVf~~t~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (498)
.+..... ..+...+.+++.... ..++||||+++..++.++..|.. .|+.+..+||+++.++|..+++.|++|+++|
T Consensus 343 ~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~I 421 (518)
T PLN00206 343 LAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPV 421 (518)
T ss_pred EEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCE
Confidence 2222222 345566677775432 35799999999999999999975 6999999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
||||+++++|||+|+|++||+|++|.++++|+||+|||||.|..|.+++|++.+|...+..+.+.
T Consensus 422 LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~ 486 (518)
T PLN00206 422 IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVAL 486 (518)
T ss_pred EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887766665543
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-50 Score=431.04 Aligned_cols=345 Identities=21% Similarity=0.292 Sum_probs=277.1
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~~ 88 (498)
..|..+.+++.++++|.+ +||.+|+|+|.++|+.++.|+|++++||||+|||++|++|++. ..+.+||++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 357788899999999997 7999999999999999999999999999999999999999874 245799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEE
Q 010884 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (498)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (498)
+|+.|+.+.++.+ ++.+..+.++........ .+. ....|+++||+.+.... .........+.+||
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---~l~---~~~~IVVgTPgrl~d~l----~r~~l~l~~l~~lV 154 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---ALR---QGPQIVVGTPGRLLDHL----KRGTLDLSKLSGLV 154 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---Hhc---CCCCEEEECHHHHHHHH----HcCCcchhhceEEE
Confidence 9999998887764 566666766665443222 222 23678888887653211 11223355689999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEec---CCCCCceEEEEEee
Q 010884 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYK 239 (498)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~~~ 239 (498)
|||||+++.|| |.. .+..+...+| ..++++||||+++.+....... +.++..+.. ....+++...+...
T Consensus 155 lDEAd~ml~~g--f~~---di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~--l~~~~~i~i~~~~~~~~~i~q~~~~v 227 (629)
T PRK11634 155 LDEADEMLRMG--FIE---DVETIMAQIPEGHQTALFSATMPEAIRRITRRF--MKEPQEVRIQSSVTTRPDISQSYWTV 227 (629)
T ss_pred eccHHHHhhcc--cHH---HHHHHHHhCCCCCeEEEEEccCChhHHHHHHHH--cCCCeEEEccCccccCCceEEEEEEe
Confidence 99999999998 543 4455555565 6789999999998876543333 344443322 23345554443333
Q ss_pred cchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc
Q 010884 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (498)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~ 319 (498)
. ...+...|..++......++||||+|+..++.+++.|.+.|+.+..+||+|++.+|..++++|++|+++|||||++++
T Consensus 228 ~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~a 306 (629)
T PRK11634 228 W-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 (629)
T ss_pred c-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHh
Confidence 2 245677788888777677899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcc
Q 010884 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
+|||+|+|++||||++|.+++.|+||+||+||.|+.|.+++|+.+.|...++.+.+...
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999888888876533
No 20
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-51 Score=424.50 Aligned_cols=343 Identities=23% Similarity=0.333 Sum_probs=282.8
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----C--Ce-EEEeCc
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P--GI-VLVVSP 86 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-----~--~~-~lvl~P 86 (498)
..|..+.+.+.+.+.|.+ .||..|+|+|..+|+.++.|+|+++.|+||+|||++|.+|++.+ . .. +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 567788899999999998 79999999999999999999999999999999999999999853 1 12 899999
Q ss_pred HHHHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcCCc
Q 010884 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (498)
Q Consensus 87 ~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (498)
|++|+.|..+.+..+ ++.+..+.++.+...... .+..+ .+++ |+||+++..+.. ......+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~---~~iv------VaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG---VDIV------VATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC---CCEE------EECccHHHHHHHcCCcchhhc
Confidence 999999999998874 455667777766655443 33332 4554 455555444432 3456679
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC---C--CCCceE
Q 010884 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---F--NRPNLF 233 (498)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~--~r~ni~ 233 (498)
.++|+|||++|.++| |.++...+ ....| +.|++++|||++..+.......+. +|..+... . ..+++.
T Consensus 176 ~~lVlDEADrmLd~G--f~~~i~~I---~~~~p~~~qtllfSAT~~~~i~~l~~~~l~--~p~~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 176 ETLVLDEADRMLDMG--FIDDIEKI---LKALPPDRQTLLFSATMPDDIRELARRYLN--DPVEIEVSVEKLERTLKKIK 248 (513)
T ss_pred CEEEeccHhhhhcCC--CHHHHHHH---HHhCCcccEEEEEecCCCHHHHHHHHHHcc--CCcEEEEccccccccccCce
Confidence 999999999999997 77666655 34444 799999999999976654444443 66544333 1 345666
Q ss_pred EEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEE
Q 010884 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (498)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlv 313 (498)
..+........+...|..+++.....++||||+|+..++.++..|...|+++..+||+|++++|..+++.|++|+.+|||
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 66665554445899999999887777899999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccc-hHHHHHHHHHhc
Q 010884 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKN 377 (498)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~-d~~~~~~~~~~~ 377 (498)
||+++++|||+|+|++|||||+|.+++.|+||+||+||.|..|.+++|+++. |...++.+.+..
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~ 393 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRL 393 (513)
T ss_pred EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 888887776654
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2e-49 Score=407.15 Aligned_cols=346 Identities=20% Similarity=0.284 Sum_probs=267.7
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~ 87 (498)
...|..+.+++.+.+.|.. +||..|+|+|.++|+.++.|+|+++.||||+|||++|++|++. ....+||++|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 3567778899999999987 8999999999999999999999999999999999999999874 24579999999
Q ss_pred HHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEE
Q 010884 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (498)
Q Consensus 88 ~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (498)
++|+.|+.+.+..++ +.+....++..... ....+.. ..+++++||+.+..... ........+++||
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~---~~~Ivv~Tp~~l~~~l~----~~~~~l~~i~lvV 175 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKA---GVHMVVGTPGRVYDMID----KRHLRVDDLKLFI 175 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcC---CCCEEEECcHHHHHHHH----hCCcccccccEEE
Confidence 999999988887754 33333333333222 1222222 25788888876532111 1222356689999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec---CCCCCceEEEEEeec
Q 010884 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKD 240 (498)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~~~~ 240 (498)
|||||++.+++ |+..+..+ +....++.+++++|||+++.........+ ..+..+.. .....++...+....
T Consensus 176 iDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (401)
T PTZ00424 176 LDEADEMLSRG--FKGQIYDV--FKKLPPDVQVALFSATMPNEILELTTKFM--RDPKRILVKKDELTLEGIRQFYVAVE 249 (401)
T ss_pred EecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEEEecCCHHHHHHHHHHc--CCCEEEEeCCCCcccCCceEEEEecC
Confidence 99999999987 55443333 33334688999999999987765444433 33332211 122333333333333
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc
Q 010884 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (498)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~ 320 (498)
....+...+..++......++||||+|++.++.+++.|...++.+..+||+++.++|..+++.|++|+++|||||+++++
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~ 329 (401)
T PTZ00424 250 KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLAR 329 (401)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccC
Confidence 33445666777777666778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
|||+|++++||++++|.|...|+||+|||||.|+.|.|++++++.|...++.+.+.
T Consensus 330 GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~ 385 (401)
T PTZ00424 330 GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERH 385 (401)
T ss_pred CcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877766543
No 22
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-50 Score=364.61 Aligned_cols=347 Identities=20% Similarity=0.331 Sum_probs=280.6
Q ss_pred cccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEE
Q 010884 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLV 83 (498)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lv 83 (498)
.......|.++.+++++++.+.. +||+.|..+|+.||+.+++|+||++++..|+|||.+|-+..++ +.-.++|
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~li 100 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALI 100 (400)
T ss_pred CcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEE
Confidence 34456788899999999999998 7999999999999999999999999999999999988776664 3457999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcC
Q 010884 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~ 157 (498)
++||++|+.|....+..+| +.+....++.+..+..+.. ..| ..+ +..||+..-.+.+ .....
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkl---d~G---~hv------VsGtPGrv~dmikr~~L~tr 168 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKL---DYG---QHV------VSGTPGRVLDMIKRRSLRTR 168 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhh---ccc---ceE------eeCCCchHHHHHHhcccccc
Confidence 9999999999888888864 4444444444433322111 111 223 5566776555533 23345
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEec---CCCCCceE
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLF 233 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~ 233 (498)
.+.++|+|||+.+++.| |. ..+..+.+.+| +.|++++|||++.++.+...+ .+.+|+.+-. .....-+.
T Consensus 169 ~vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~k--fmtdpvrilvkrdeltlEgIK 241 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEK--FMTDPVRILVKRDELTLEGIK 241 (400)
T ss_pred ceeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHH--hcCCceeEEEecCCCchhhhh
Confidence 58999999999999987 44 45555666665 999999999999999885544 4566654322 23333344
Q ss_pred EEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEE
Q 010884 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (498)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlv 313 (498)
.-+...+..+.|+..|..+.....-.+++|||||++.+++|.+.+++.++.+...||+|++++|..+++.|++|+-+||+
T Consensus 242 qf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLi 321 (400)
T KOG0328|consen 242 QFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLI 321 (400)
T ss_pred hheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEE
Confidence 44444555567899999988887778899999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
+|+++++|||+|.|.+||+||+|.+.+.|+||+||.||.|+.|.++-|+..+|.+.++.+.+.
T Consensus 322 tTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ 384 (400)
T KOG0328|consen 322 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQY 384 (400)
T ss_pred EechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988877654
No 23
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.2e-50 Score=389.99 Aligned_cols=337 Identities=22% Similarity=0.301 Sum_probs=273.4
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---------------CCCeE
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------------KPGIV 81 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---------------~~~~~ 81 (498)
|++.++..++++.++. .||..++|+|..+|+-.++.+|+|.+|.||||||++|++|++. .++.+
T Consensus 247 wEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpya 325 (673)
T KOG0333|consen 247 WEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYA 325 (673)
T ss_pred hhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCcee
Confidence 3444455788888887 6999999999999999999999999999999999999998873 25789
Q ss_pred EEeCcHHHHHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH--Hhhhh
Q 010884 82 LVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHS 155 (498)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l--~~~~~ 155 (498)
+++.||++|++|...+-.+ +|+.+..+.++....+.. +++--++..+++||+.+... .....
T Consensus 326 iilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~------------fqls~gceiviatPgrLid~Lenr~lv 393 (673)
T KOG0333|consen 326 IILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG------------FQLSMGCEIVIATPGRLIDSLENRYLV 393 (673)
T ss_pred eeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh------------hhhhccceeeecCchHHHHHHHHHHHH
Confidence 9999999999988887666 567777777766655432 22333333366777754433 23444
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHH-------------------hCC----CCCEEEEeecCChHHHHHHH
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-------------------YLP----DVPILALTATAAPKVQKDVM 212 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-------------------~~~----~~~~l~lSAT~~~~~~~~i~ 212 (498)
++...+||+|||+++.++| |.|+|..+..-.. .+. -.+.+.||||+++.+.....
T Consensus 394 l~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar 471 (673)
T KOG0333|consen 394 LNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR 471 (673)
T ss_pred hccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH
Confidence 5668899999999999999 8998887543211 111 15789999999999987444
Q ss_pred HHhCCCCCeEEecCC---CCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeec
Q 010884 213 ESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (498)
Q Consensus 213 ~~l~~~~~~~~~~~~---~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h 289 (498)
. .+..|+++..++ ..|-+...|..... +.+...|.++|.+....++|||+|+++.|+.||+.|.+.|+.+..||
T Consensus 472 ~--ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlH 548 (673)
T KOG0333|consen 472 S--YLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLH 548 (673)
T ss_pred H--HhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEee
Confidence 4 456777665443 34445555555544 56699999999998888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHH
Q 010884 290 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (498)
Q Consensus 290 ~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~ 369 (498)
|+-++++|+.+++.|++|...|||||+++|+|||+|||.+||+||+++|+++|.||+||+||+|+.|.++.|+++.|-..
T Consensus 549 g~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v 628 (673)
T KOG0333|consen 549 GGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAV 628 (673)
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998554
Q ss_pred HH
Q 010884 370 ME 371 (498)
Q Consensus 370 ~~ 371 (498)
+.
T Consensus 629 ~y 630 (673)
T KOG0333|consen 629 FY 630 (673)
T ss_pred HH
Confidence 43
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.2e-48 Score=421.08 Aligned_cols=339 Identities=20% Similarity=0.213 Sum_probs=250.9
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----CCeEEEeCcHHHHHHHH
Q 010884 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQ 94 (498)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-----~~~~lvl~P~~~L~~q~ 94 (498)
..+++.+.+.|++ .||.+|+++|.++|+.+++|+|+++.+|||||||+||++|++.. ..++|||+||++|++||
T Consensus 19 ~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 19 AWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQ 97 (742)
T ss_pred CcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHH
Confidence 3456889999987 79999999999999999999999999999999999999999852 46899999999999999
Q ss_pred HHHHHHc---CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 95 VIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 95 ~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
...++++ ++.+..+.+......+..+ .. ..+++++||+++.................+++|||||||.+.
T Consensus 98 ~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 98 LRAVRELTLRGVRPATYDGDTPTEERRWA----RE---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 9999986 4556666666665443222 22 268999999877432111000001124568999999999986
Q ss_pred c-cCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC--CCceEEEEEee--------
Q 010884 172 S-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--RPNLFYEVRYK-------- 239 (498)
Q Consensus 172 ~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--r~ni~~~v~~~-------- 239 (498)
. +|..+...+..+..+...++ +.|++++|||.++... ....+.. .+..+..... +....+.+...
T Consensus 171 g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 171 GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA--AASRLIG-APVVAVTEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcC-CCeEEECCCCCCcCceEEEEecCCccccccc
Confidence 5 23233333445555555554 5789999999987753 2333322 3333222111 11222211110
Q ss_pred -------cchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC--------CCceEeecCCCCHHHHHHHHHHH
Q 010884 240 -------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDW 304 (498)
Q Consensus 240 -------~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f 304 (498)
.....+...+..+++. +.++||||+|++.|+.++..|++. +..+..|||++++++|..++++|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 0112344455555554 568999999999999999998763 56789999999999999999999
Q ss_pred HcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEc--cchHHHHH
Q 010884 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRME 371 (498)
Q Consensus 305 ~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~--~~d~~~~~ 371 (498)
++|++++||||+++++|||+|++++||+|++|.+.+.|+||+|||||.|+.|.++++.. +.|...+.
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999886 34444444
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-49 Score=371.42 Aligned_cols=337 Identities=21% Similarity=0.336 Sum_probs=278.3
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------------CCeEEEeCcH
Q 010884 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPL 87 (498)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------------~~~~lvl~P~ 87 (498)
+.--+++...+++ .||..|+|+|.+||+-+++|+|++.+|.||+|||++|++|.+.. +..+||++||
T Consensus 225 Fq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 225 FQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPT 303 (629)
T ss_pred HhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEecc
Confidence 5556778888887 69999999999999999999999999999999999999998742 4568999999
Q ss_pred HHHHHHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH--HhhhhcCCccEE
Q 010884 88 IALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLV 162 (498)
Q Consensus 88 ~~L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l--~~~~~~~~l~~i 162 (498)
++|+.|.-....+ .|....++.++....+. .+++..+ ..+ +++||+.+..| .+..++..+.++
T Consensus 304 reLalqie~e~~kysyng~ksvc~ygggnR~eq---ie~lkrg---vei------iiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 304 RELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ---IEDLKRG---VEI------IIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred HHHHHHHHhHHhHhhhcCcceEEEecCCCchhH---HHHHhcC---ceE------EeeCCchHhhhhhcCeeeeeeeEEE
Confidence 9999887777666 46777777776665543 3444444 444 55666766666 345556678999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE-ecCCCCCce---EEEEEe
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNL---FYEVRY 238 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~ni---~~~v~~ 238 (498)
|+|||++|+++| |.|.++++ +....|+++.++.|||+++.+.+.. .-.+.+|.++ ..+.+.... ...+ .
T Consensus 372 VlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa--~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~ 444 (629)
T KOG0336|consen 372 VLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLA--QSYLKEPMIVYVGSLDLVAVKSVKQNI-I 444 (629)
T ss_pred Eecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHH--HHhhhCceEEEecccceeeeeeeeeeE-E
Confidence 999999999999 99999988 7888899999999999999998843 3455677643 344433221 1111 2
Q ss_pred ecchhhHHHHHHHHHHhc-CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc
Q 010884 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (498)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~-~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a 317 (498)
.....+++..+..+++.. ...++||||..+..|+.|...|.-.|+.+..+||+-.+.+|+..++.|++|+++|||||+.
T Consensus 445 v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDL 524 (629)
T ss_pred ecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEech
Confidence 333356777777777654 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
+++|+|+|||.+|++||+|.+++.|+||+||+||+|+.|.++.|++..|....+.+++-
T Consensus 525 aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 525 ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888877654
No 26
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=370.05 Aligned_cols=335 Identities=22% Similarity=0.336 Sum_probs=274.5
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---------CC--eEEEeCcHH
Q 010884 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PG--IVLVVSPLI 88 (498)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~---------~~--~~lvl~P~~ 88 (498)
+++++.+..++.+ +||..++|.|..+|+.++.++||.|.++||||||++|++|++.. ++ -+|||+|||
T Consensus 11 ~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcH
Confidence 4466999999997 89999999999999999999999999999999999999999741 23 579999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhh----hhcCCc
Q 010884 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (498)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~----~~~~~l 159 (498)
+|+.|..+.+..+ .+.+..+.++.+......... ... ..| .++|||++..+... .+...+
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk---ee~--~nI------lVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK---EEG--PNI------LVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH---HhC--CcE------EEeCchhHHHHHhchhhhcccccc
Confidence 9999988776653 556888888866655443332 222 334 55666766666432 334568
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC----CC---c
Q 010884 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN----RP---N 231 (498)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~----r~---n 231 (498)
.++|+||||++.++| |. ..+..++..+| .+..=++|||.+.++.. ....++.+|+.+..... .| .
T Consensus 159 e~LVLDEADrLldmg--Fe---~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 159 EILVLDEADRLLDMG--FE---ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred ceEEecchHhHhccc--HH---HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhc
Confidence 999999999999999 55 45666677777 56678999999999877 55568888876543322 22 3
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCC
Q 010884 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRK 309 (498)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (498)
++|.+... +.++..+.++|......++|||.+|...++..+..|... +..+..+||.|.++.|..+++.|.+..-
T Consensus 232 ~~Y~v~~a---~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~ 308 (567)
T KOG0345|consen 232 LEYLVCEA---DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN 308 (567)
T ss_pred ceeeEecH---HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC
Confidence 34444433 578999999999988899999999999999999988864 6788999999999999999999999888
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 310 ~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
.+|+||+++++|||+|+|++||+||+|.++..|.||+||+||.|+.|.+++|..+.+...+.++.-.
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999888888776443
No 27
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-48 Score=375.19 Aligned_cols=343 Identities=22% Similarity=0.351 Sum_probs=274.3
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---------CCeEEEe
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~---------~~~~lvl 84 (498)
...|..++++..+++++.. +||..|+|+|...||-.+.|+|++.+|.||+|||.+|.+|+|.+ .-++||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 4567889999999999986 89999999999999999999999999999999999999999864 2468999
Q ss_pred CcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhh-HHHHHhh--hhcC
Q 010884 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKI--HSRG 157 (498)
Q Consensus 85 ~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~-~~~l~~~--~~~~ 157 (498)
+||++|+.|.....+++ .|.+.+..++.........+. .. .+| +++|||+ ...+.+. .++.
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~--PDI------VIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SR--PDI------VIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hC--CCE------EEecchhHHHHhccCCCcccc
Confidence 99999998877766653 466666666666655443332 22 445 5556663 3344332 3355
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC---CCce-
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL- 232 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni- 232 (498)
.+.++|+|||++|++-| |+..+ ..+.+.+| ++|.++||||++..+.. ...+.+..|+.+....+ .+.+
T Consensus 327 siEVLvlDEADRMLeeg--Fadem---nEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~Lt 399 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG--FADEM---NEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLT 399 (691)
T ss_pred ceeEEEechHHHHHHHH--HHHHH---HHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhh
Confidence 68899999999999988 76544 45555555 88999999999999876 55577888875443322 2223
Q ss_pred --EEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCe
Q 010884 233 --FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (498)
Q Consensus 233 --~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (498)
++.++... ..++-..|..++...-...+|||+.|++.|.++.-.|--.|+++.-+||.|++.+|.+.++.|++++++
T Consensus 400 QEFiRIR~~r-e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 400 QEFIRIRPKR-EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred HHHheecccc-ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 22232221 112233344555544466799999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 311 vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
|||||+++++|+|+++|..||||.+|.+.+.|+||+||+.|+|+.|.++.|+...|...++.++++.
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 28
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-47 Score=354.11 Aligned_cols=354 Identities=19% Similarity=0.233 Sum_probs=268.7
Q ss_pred cccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeC
Q 010884 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (498)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~ 85 (498)
.....|..+.+.+.+.+.|+. +|+..++|+|..+|+++++|+|++.+|.||||||++|.+|++.+ +--++|++
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred cccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 345778899999999999998 89999999999999999999999999999999999999999975 34589999
Q ss_pred cHHHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccE
Q 010884 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (498)
Q Consensus 86 P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~ 161 (498)
||++|+-|..++|..+| +++..+.++...-.. ...... ...++++||+.++-+..-+.=.......++.+
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~q----a~~L~~--rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQ----AAILSD--RPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhhh----hhhccc--CCCeEecCccccccccccCCccchhhhhceee
Confidence 99999999999998854 555555555433222 122233 36677788876654321110001112345889
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCCC-CCEEEEeecCChHHHHHHHHHhCCCC--CeEEecCCC---CCceEEE
Q 010884 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQN--PLVLKSSFN---RPNLFYE 235 (498)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~l~lSAT~~~~~~~~i~~~l~~~~--~~~~~~~~~---r~ni~~~ 235 (498)
+|+|||+.+.+-. |- ..|..+....|. +|.++||||.+........ ..... +..+..-.+ ...++..
T Consensus 157 lVlDEADrvL~~~--f~---d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~--~~i~k~~a~~~e~~~~vstvetL~q~ 229 (442)
T KOG0340|consen 157 LVLDEADRVLAGC--FP---DILEGIEECLPKPRQTLLFSATITDTIKQLFG--CPITKSIAFELEVIDGVSTVETLYQG 229 (442)
T ss_pred EEecchhhhhccc--hh---hHHhhhhccCCCccceEEEEeehhhHHHHhhc--CCcccccceEEeccCCCCchhhhhhh
Confidence 9999999998854 43 445555666664 5999999999887654221 11122 111111111 1112222
Q ss_pred EEeecchhhHHHHHHHHHHh---cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEE
Q 010884 236 VRYKDLLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (498)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~---~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 312 (498)
+.... .+.+-..+..+|+. .+.+.++||+++..+|+.|+..|+..++.+..+|+-|++++|...+.+|+++.++||
T Consensus 230 yI~~~-~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~il 308 (442)
T KOG0340|consen 230 YILVS-IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARIL 308 (442)
T ss_pred eeecc-hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEE
Confidence 22111 12233344555533 356789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccC
Q 010884 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (498)
Q Consensus 313 vaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~ 380 (498)
|||+++++|+|+|.|..||+|++|..+..|+||+||+.|+|+.|.++.+++..|.+.+..+......+
T Consensus 309 iaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 309 IATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred EEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999887765543
No 29
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.8e-46 Score=364.28 Aligned_cols=345 Identities=19% Similarity=0.245 Sum_probs=271.8
Q ss_pred ccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC----------CCe
Q 010884 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGI 80 (498)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~----------~~~ 80 (498)
......+....+++..++++++ .||..+++.|...|+.++.|+|+++.|-||+|||++|++|+++. +-.
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 4446677889999999999998 89999999999999999999999999999999999999999742 234
Q ss_pred EEEeCcHHHHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH-Hhhh
Q 010884 81 VLVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIH 154 (498)
Q Consensus 81 ~lvl~P~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l-~~~~ 154 (498)
+|||+||++|+.|....++++ ++.+..+.++..... ....+.. ...++++| ||++... .+..
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k---~~niliAT------PGRLlDHlqNt~ 224 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVK---GCNILIAT------PGRLLDHLQNTS 224 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhc---cccEEEeC------CchHHhHhhcCC
Confidence 899999999999999988873 445555555443322 1222323 25565555 5433322 1111
Q ss_pred h--cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCC--
Q 010884 155 S--RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-- 230 (498)
Q Consensus 155 ~--~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-- 230 (498)
. ...+.++|+|||+++++.| ||.++..|..+.. ..+|.+++|||.++.+.+...-.|.- ++..+...-...
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~~di~~Ii~~lp--k~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~ 299 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FEEDVEQIIKILP--KQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERE 299 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cHHHHHHHHHhcc--ccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcc
Confidence 1 1235789999999999999 8876666544443 37899999999999998755555544 565543321111
Q ss_pred ---ceEEEEEeecchhhHHHHHHHHHHhcCC-ccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHc
Q 010884 231 ---NLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (498)
Q Consensus 231 ---ni~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (498)
.+...+...+. +..+..+..+|+++.. .++||||+|...+.-+++.|+...++|..+||++++..|..+..+|.+
T Consensus 300 The~l~Qgyvv~~~-~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k 378 (543)
T KOG0342|consen 300 THERLEQGYVVAPS-DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK 378 (543)
T ss_pred hhhcccceEEeccc-cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh
Confidence 12222222222 3447788888887765 889999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHH
Q 010884 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (498)
Q Consensus 307 g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~ 374 (498)
.+--|||||++.++|+|+|+|++||+||+|.++++|+||+||+||.|..|.++++..+.+...++.+-
T Consensus 379 aesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 379 AESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988888776
No 30
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-46 Score=366.85 Aligned_cols=342 Identities=22% Similarity=0.310 Sum_probs=278.3
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC----------CCeEEE
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLV 83 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~----------~~~~lv 83 (498)
..+|.+++++...++.|++ -+|..++.+|.++|+..+.|+|++..|.|||||||+|++|.|.. +--+||
T Consensus 68 ~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 4588999999999999998 59999999999999999999999999999999999999999853 234899
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcC
Q 010884 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~ 157 (498)
|+|||+|+.|....|.+.| ..+..+.++........-.. .+.|++|||-.+. ..+.. ..+..
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-------~mNILVCTPGRLL-----QHmde~~~f~t~ 214 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-------QMNILVCTPGRLL-----QHMDENPNFSTS 214 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-------cCCeEEechHHHH-----HHhhhcCCCCCC
Confidence 9999999999999999965 34555555544333222111 2667666555332 22322 22345
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC----CC-CCc
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FN-RPN 231 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~-r~n 231 (498)
.+.++|+|||++++++| |+ ..|..+...+| ..|.++||||.+..+.. ...|++.+|..+... .. ..+
T Consensus 215 ~lQmLvLDEADR~LDMG--Fk---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~~ 287 (758)
T KOG0343|consen 215 NLQMLVLDEADRMLDMG--FK---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPSN 287 (758)
T ss_pred cceEEEeccHHHHHHHh--HH---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChhh
Confidence 58899999999999999 66 45666777776 78999999999999977 566788888765432 12 223
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCC
Q 010884 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRK 309 (498)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (498)
+...+.... ..+++..|..+++.+...++|||+.|.+++.-+++.+.+. |++...+||.|++..|.++..+|...+-
T Consensus 288 L~Q~y~~v~-l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~ 366 (758)
T KOG0343|consen 288 LQQSYVIVP-LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA 366 (758)
T ss_pred hhheEEEEe-hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc
Confidence 333332222 2588999999999999999999999999999999999875 8999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHH-HHHHHh
Q 010884 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILSK 376 (498)
Q Consensus 310 ~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~-~~~~~~ 376 (498)
-||+||+++++|+|+|.|++||++|.|.++.+|+||+||+.|.+..|.+++++.+++.+.+ ..+.+.
T Consensus 367 ~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 367 VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999995544 444433
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-45 Score=359.72 Aligned_cols=343 Identities=21% Similarity=0.298 Sum_probs=264.1
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------------CCeE
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIV 81 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------------~~~~ 81 (498)
+..|..+.+++.+...|...++++.++.+|+++|+.+++|+|++|.++||+|||++|++|+++. +.-+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 5667889999999999999999999999999999999999999999999999999999999742 4569
Q ss_pred EEeCcHHHHHHHHHHHHHHcCCcee------EecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH--hh
Q 010884 82 LVVSPLIALMENQVIGLKEKGIAGE------FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KI 153 (498)
Q Consensus 82 lvl~P~~~L~~q~~~~l~~~gi~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~--~~ 153 (498)
|||+|||+|+.|.++.++++.-+.. .+.+.....++.. ++.| +.|+++||-.+. ..|. ..
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKAR----LRKG---iNILIgTPGRLv-----DHLknT~~ 282 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKAR----LRKG---INILIGTPGRLV-----DHLKNTKS 282 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHH----HhcC---ceEEEcCchHHH-----HHHhccch
Confidence 9999999999999999999644332 2222222333333 3333 666666555432 2222 22
Q ss_pred hhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-----------CCCEEEEeecCChHHHHHHHHHhCCCCCeE
Q 010884 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----------DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (498)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-----------~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (498)
....+++++|+|||+++.+.| |..++..|..+....+ ..+-+++|||++..+.+ ...+.+.+|+.
T Consensus 283 i~~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~ 358 (708)
T KOG0348|consen 283 IKFSRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVY 358 (708)
T ss_pred heeeeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCcee
Confidence 334569999999999999999 7777777666553321 24579999999999877 66677888877
Q ss_pred Eec-----CCC----------C-------------Cce--EEEEEeecchhhHHHHHH----HHHHhcCCccEEEEeCcc
Q 010884 223 LKS-----SFN----------R-------------PNL--FYEVRYKDLLDDAYADLC----SVLKANGDTCAIVYCLER 268 (498)
Q Consensus 223 ~~~-----~~~----------r-------------~ni--~~~v~~~~~~~~~~~~l~----~~l~~~~~~~~IVf~~t~ 268 (498)
+.. ..+ . .++ .|.++... -.+-.|. ...+.....++|||..+.
T Consensus 359 I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~~~~k~~~~qk~iVF~S~~ 435 (708)
T KOG0348|consen 359 ISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK---LRLVALAALLLNKVKFEEKQKMIVFFSCS 435 (708)
T ss_pred eeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc---hhHHHHHHHHHHHhhhhhhceeEEEEech
Confidence 751 111 0 011 12222111 1222333 333445667899999999
Q ss_pred chHHHHHHHHHhC----------------------CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCC
Q 010884 269 TTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (498)
Q Consensus 269 ~~~~~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~ 326 (498)
+.++--+..|.+. +.++..+||+|++++|..+++.|...+-.||+||+++++|+|+|+
T Consensus 436 d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~ 515 (708)
T KOG0348|consen 436 DSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPH 515 (708)
T ss_pred hHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCC
Confidence 9999888777642 235688999999999999999999888889999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHH
Q 010884 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 327 v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
|++||.|++|.+.++|+||+||+.|.|..|.+++|..+.+.+.++.+..
T Consensus 516 V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 516 VGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred cCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987776544
No 32
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-46 Score=346.26 Aligned_cols=344 Identities=23% Similarity=0.313 Sum_probs=276.3
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~ 87 (498)
.+.|+++.+..+++..+.+ .||+.|.|+|+++|+.++.|+|+++-|..|+|||.+|.+|.|.+ .-.++|++|+
T Consensus 84 G~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred CccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 4567889999999999888 69999999999999999999999999999999999999999975 2358999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcCCccE
Q 010884 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (498)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (498)
++|+.|..+-++. +|+.+....+++.... ++..-.....+ +++||++...|.+ ........+
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrD------DI~Rl~~~VH~------~vgTPGRIlDL~~KgVa~ls~c~~ 230 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRD------DIMRLNQTVHL------VVGTPGRILDLAKKGVADLSDCVI 230 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCccccc------ceeeecCceEE------EEcCChhHHHHHhcccccchhceE
Confidence 9999988777666 4666666666654332 22222222333 5667776666633 333455779
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEe--cCCCCC--ceEEEE
Q 010884 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRP--NLFYEV 236 (498)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~--ni~~~v 236 (498)
+|+|||+.+++ .+|.+.... +...+| +.|++++|||.+-.+..-+.+.+ .+|..+. ...... .-+|.+
T Consensus 231 lV~DEADKlLs--~~F~~~~e~---li~~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 231 LVMDEADKLLS--VDFQPIVEK---LISFLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYYAF 303 (459)
T ss_pred EEechhhhhhc--hhhhhHHHH---HHHhCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhheee
Confidence 99999999987 457765555 445555 78999999999999887665544 4554432 111111 224444
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
+.. ..|..-|..++.+..-.+.|||||+.+.+|.+|+.+.+.|++|.++|+.|.++.|..+...|++|.++.||||+
T Consensus 304 V~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 304 VEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred ech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 433 35667777777777777899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccC
Q 010884 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (498)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~ 380 (498)
.+.+|||++.|.+||+||+|++.++|+||+||+||.|..|.++.+++.+|...+..+..+....
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999888876543
No 33
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-45 Score=361.36 Aligned_cols=342 Identities=21% Similarity=0.310 Sum_probs=269.7
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC----------------CC
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~----------------~~ 79 (498)
.|..-.+.+.+...++. -|+..++|+|+.+|+.+..|+|++++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 45556677777777776 69999999999999999999999999999999999999999842 36
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--h
Q 010884 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (498)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~ 153 (498)
.+||++||++|+.|...+.+++ ++....+..+..... ........+++++ +||+.+..+.+ .
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~------q~~~~~~gcdIlv------aTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA------QLRFIKRGCDILV------ATPGRLKDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh------hhhhhccCccEEE------ecCchhhhhhhcce
Confidence 7999999999999999999884 344444444422221 1111122366654 55555555532 3
Q ss_pred hhcCCccEEEEeccccccc-cCCCChHHHHHHHHHHHhC--CCCCEEEEeecCChHHHHHHHHHhCCCCCe---EEecCC
Q 010884 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSF 227 (498)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~---~~~~~~ 227 (498)
..+..+.++|+|||+.|.+ +| |.|.++.+..-.... .+.+.++||||-+..........+. .+.. +-+.+.
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~-~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLK-DNYIFLAVGRVGS 298 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhh-ccceEEEEeeecc
Confidence 3345578999999999999 77 888888775444333 3788999999999998884444332 2222 334567
Q ss_pred CCCceEEEEEeecchhhHHHHHHHHHHhcC----Cc-----cEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 010884 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (498)
Q Consensus 228 ~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~----~~-----~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (498)
...|+...+.+... .++...|+++|.... .. .++|||.|++.|..++..|...++++..+||..++.+|.
T Consensus 299 ~~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 299 TSENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred ccccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 78888888877654 356677777775322 22 699999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHH
Q 010884 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (498)
Q Consensus 299 ~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~ 374 (498)
+.++.|++|.+++||||+++++|+|+|+|++||+||+|....+|+||+||+||.|+.|.+..|++..+....+.+.
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999977665555443
No 34
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-45 Score=346.96 Aligned_cols=348 Identities=22% Similarity=0.319 Sum_probs=273.9
Q ss_pred ccccccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---------
Q 010884 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------- 77 (498)
Q Consensus 7 p~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~--------- 77 (498)
|....+....|+++.+++.+++++.+ .||+.++-+|+.||+.+++|+|+++-|.||||||++|++|+++.
T Consensus 11 ~~~ee~~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~ 89 (569)
T KOG0346|consen 11 PQVEESKEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTND 89 (569)
T ss_pred cchhhhhhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccc
Confidence 33445556799999999999999998 79999999999999999999999999999999999999999852
Q ss_pred ---CCeEEEeCcHHHHHHHHHHHHHHc------CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHH
Q 010884 78 ---PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148 (498)
Q Consensus 78 ---~~~~lvl~P~~~L~~q~~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~ 148 (498)
+..++|++||++|++|....+.++ -+.+.-+.+..+..... ....+. .+|+++ ||+.+-
T Consensus 90 ~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~--pdIvV~------TP~~ll 157 (569)
T KOG0346|consen 90 GEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDL--PDIVVA------TPAKLL 157 (569)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccC--CCeEEe------ChHHHH
Confidence 457899999999999888777664 22333333333333222 222333 445444 554333
Q ss_pred HHHhh---hhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEe
Q 010884 149 KLKKI---HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (498)
Q Consensus 149 ~l~~~---~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (498)
.+... .....+.++|+|||+.+..+|+ . ..+..+...+| ..|.++||||++.++.. .+.+.+.+|+++.
T Consensus 158 ~~~~~~~~~~~~~l~~LVvDEADLllsfGY--e---edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLk 230 (569)
T KOG0346|consen 158 RHLAAGVLEYLDSLSFLVVDEADLLLSFGY--E---EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILK 230 (569)
T ss_pred HHHhhccchhhhheeeEEechhhhhhhccc--H---HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEE
Confidence 33211 2345589999999999999994 4 45566666676 67899999999999877 7788899998876
Q ss_pred cCC-C---CCce-EEEEEeecchhhHHHHHHHHHHh-cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 010884 225 SSF-N---RPNL-FYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (498)
Q Consensus 225 ~~~-~---r~ni-~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (498)
..- + ..++ .|.+... ..+++..+..+++- .-.+++|||+||...|-+|.-.|.+.|++.++++|.|+...|.
T Consensus 231 l~e~el~~~dqL~Qy~v~cs--e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~ 308 (569)
T KOG0346|consen 231 LTEGELPNPDQLTQYQVKCS--EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRC 308 (569)
T ss_pred eccccCCCcccceEEEEEec--cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchh
Confidence 432 1 1223 3333333 46788877777753 2356799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEeC-----------------------------------ccccccccCCccEEEEeCCCCCHHHHH
Q 010884 299 SVLDDWISSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (498)
Q Consensus 299 ~~~~~f~~g~~~vlvaT~-----------------------------------a~~~GiD~p~v~~VI~~~~p~s~~~y~ 343 (498)
.++++|..|-+++||||+ -.++|||+.+|..||+||+|.+...|+
T Consensus 309 Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYI 388 (569)
T KOG0346|consen 309 HIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYI 388 (569)
T ss_pred hHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHH
Confidence 999999999999999998 235899999999999999999999999
Q ss_pred HHHhhcCCCCCCceEEEEEccchHH---HHHHHHHh
Q 010884 344 QESGRAGRDQLPSKSLLYYGMDDRR---RMEFILSK 376 (498)
Q Consensus 344 Q~~GRagR~g~~~~~~~~~~~~d~~---~~~~~~~~ 376 (498)
||+||++|.+++|.++.|+.+.+.. .++.+...
T Consensus 389 HRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 389 HRVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred HhccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 9999999999999999999998877 44444443
No 35
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-44 Score=352.68 Aligned_cols=346 Identities=22% Similarity=0.301 Sum_probs=264.1
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHhHhcC-----------------
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK----------------- 77 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l~~l~~----------------- 77 (498)
.|..+.++.+++.+|.. .||+.|+++|...|+++..| .|++..|.|||||||+|-+|++.+
T Consensus 182 AW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 34457788899999997 79999999999999999999 699999999999999999999861
Q ss_pred C--CeEEEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH
Q 010884 78 P--GIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151 (498)
Q Consensus 78 ~--~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~ 151 (498)
. ...||++|||+|+.|....+... ++.+..+.++........++.. .|++ +++|||++..+.
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~I--------VVATPGRlweli 328 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDI--------VVATPGRLWELI 328 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCE--------EEecchHHHHHH
Confidence 2 34899999999999999998873 7788888888776665554433 3333 677888766653
Q ss_pred h-----hhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC------CCCCEEEEeecCChH--------------
Q 010884 152 K-----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILALTATAAPK-------------- 206 (498)
Q Consensus 152 ~-----~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~------~~~~~l~lSAT~~~~-------------- 206 (498)
. +.+...+.++|+|||++|.+-|| | ..|..|+..+ +..|.+.+|||++-.
T Consensus 329 ~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F----~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k 403 (731)
T KOG0347|consen 329 EEDNTHLGNFKKVKCLVLDEADRMVEKGH-F----EELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDK 403 (731)
T ss_pred HhhhhhhhhhhhceEEEEccHHHHhhhcc-H----HHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccch
Confidence 2 33456689999999999999998 4 3444443332 467899999997642
Q ss_pred ------HHHHHHHHhCCCC-CeEEecCCCCCc---eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHH
Q 010884 207 ------VQKDVMESLCLQN-PLVLKSSFNRPN---LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 276 (498)
Q Consensus 207 ------~~~~i~~~l~~~~-~~~~~~~~~r~n---i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~ 276 (498)
..+.+.+.+++.. |.++........ +......... .++--.|..+|..+ ++++|||||+...+.+|+-
T Consensus 404 ~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~ 481 (731)
T KOG0347|consen 404 EDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTV 481 (731)
T ss_pred hhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEeec-CCceEEEechHHHHHHHHH
Confidence 2233444455543 333322111000 0000000000 00000111222333 4679999999999999999
Q ss_pred HHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 010884 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (498)
Q Consensus 277 ~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~ 356 (498)
.|...+++...+|+.|.+++|...+++|++..-.|||||+++++|+|+|+|.+||||.+|.+.+.|+||+||+.|++..|
T Consensus 482 ~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G 561 (731)
T KOG0347|consen 482 LLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG 561 (731)
T ss_pred HHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccchHHHHHHHHHhcccCC
Q 010884 357 KSLLYYGMDDRRRMEFILSKNQSKN 381 (498)
Q Consensus 357 ~~~~~~~~~d~~~~~~~~~~~~~~~ 381 (498)
.+++++++.+...+..+.+....+.
T Consensus 562 vsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 562 VSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred eEEEEeChHHhHHHHHHHHHHhhcc
Confidence 9999999999998888877655443
No 36
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.2e-42 Score=373.24 Aligned_cols=321 Identities=21% Similarity=0.202 Sum_probs=252.5
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHH
Q 010884 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (498)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g------~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~ 89 (498)
.++....+...+.+.|||. ++|.|.+||+.++.+ .|.+++||||+|||.+|+++++ ..+..++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 3555667788888889995 899999999999875 6999999999999999998875 45789999999999
Q ss_pred HHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEe
Q 010884 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (498)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViD 165 (498)
|+.|++..+++ +++.+..+++......+......+..+. .+++++||..+. +......++++|||
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll~---------~~v~f~~L~llVID 580 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLLQ---------KDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHhh---------CCCCcccCCEEEee
Confidence 99999999887 3667778888777777777787777765 678888885432 22234568999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-CCCCCceEEEEEeecchhh
Q 010884 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDD 244 (498)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ni~~~v~~~~~~~~ 244 (498)
|+|++ |... ...+....+++++++||||+.+.+... ...+..++.++.. +..+..+...+..... ..
T Consensus 581 Eahrf---gv~~------~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~ 648 (926)
T TIGR00580 581 EEQRF---GVKQ------KEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSIIATPPEDRLPVRTFVMEYDP-EL 648 (926)
T ss_pred ccccc---chhH------HHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEEEecCCCCccceEEEEEecCH-HH
Confidence 99994 4322 233444446889999999999887653 3345556655543 3344444433332211 11
Q ss_pred HHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccccc
Q 010884 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (498)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~Gi 322 (498)
....+...+. .+++++|||++++.++.+++.|.+. ++++..+||+|++++|..++++|++|+++|||||+++++||
T Consensus 649 i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 1233333333 3567999999999999999999984 78899999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 323 DRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 323 D~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
|+|++++||+++.|. +..+|+|++||+||.|+.|.|++++...
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999875 7889999999999999999999998643
No 37
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-43 Score=328.16 Aligned_cols=349 Identities=19% Similarity=0.259 Sum_probs=276.9
Q ss_pred ccccccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHhcC------C
Q 010884 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------P 78 (498)
Q Consensus 7 p~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l~~------~ 78 (498)
|-+.+.+...|+++.+.+++++.|.. ++|..|+.+|+.|++-++.. +++|.++..|+|||.||.+.+|.+ .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~ 160 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVV 160 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccC
Confidence 44557888999999999999999997 89999999999999999976 689999999999999999999975 5
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHcCCce----eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---
Q 010884 79 GIVLVVSPLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--- 151 (498)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~l~~~gi~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~--- 151 (498)
+.+++|+|+++|+.|..+-+.+.|-.. .+...+........+ .-.|+ +.||+-...|.
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i---------~eqIv------iGTPGtv~Dlm~kl 225 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKL---------TEQIV------IGTPGTVLDLMLKL 225 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcc---------hhhee------eCCCccHHHHHHHH
Confidence 678999999999999999999877544 221111100000111 13344 44555333331
Q ss_pred hhhhcCCccEEEEeccccccc-cCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEe-cCCC
Q 010884 152 KIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFN 228 (498)
Q Consensus 152 ~~~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~ 228 (498)
+......+..+|+|||+.+.+ .| |+. .-..+....| +.+++++|||....+.......+.-.++..++ ....
T Consensus 226 k~id~~kikvfVlDEAD~Mi~tqG--~~D---~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~ 300 (477)
T KOG0332|consen 226 KCIDLEKIKVFVLDEADVMIDTQG--FQD---QSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELA 300 (477)
T ss_pred HhhChhhceEEEecchhhhhhccc--ccc---cchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcc
Confidence 334456689999999999875 34 332 2223444555 89999999999999887666655444454444 3456
Q ss_pred CCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCC
Q 010884 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (498)
Q Consensus 229 r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (498)
..+++.........++|++.|.++.....-++.||||.|++.+.+++..|.+.|..+..+||+|...+|..+.+.|+.|.
T Consensus 301 L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~ 380 (477)
T KOG0332|consen 301 LDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGK 380 (477)
T ss_pred ccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCc
Confidence 67776666666667899999999887777788999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCC------CHHHHHHHHhhcCCCCCCceEEEEEccch-HHHHHHHHHh
Q 010884 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSK 376 (498)
Q Consensus 309 ~~vlvaT~a~~~GiD~p~v~~VI~~~~p~------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d-~~~~~~~~~~ 376 (498)
-+|||+|+++++|||++.|..||+||+|- +.+.|+||+||+||.|+.|.++-+++..+ ...+..|.+.
T Consensus 381 ~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 381 EKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKH 455 (477)
T ss_pred ceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHH
Confidence 99999999999999999999999999995 78999999999999999999999887554 4555555544
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.6e-42 Score=379.75 Aligned_cols=324 Identities=22% Similarity=0.279 Sum_probs=231.0
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------------CCeEEEeCcHHH
Q 010884 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPLIA 89 (498)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------------~~~~lvl~P~~~ 89 (498)
+.+.+.+++++ +|..|+|+|.++|+.+++|++++++||||+|||++|++|++.. ...+|+|+|+++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 34566777776 6778999999999999999999999999999999999998731 236999999999
Q ss_pred HHHHHHHHHHH---------------c-CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhh
Q 010884 90 LMENQVIGLKE---------------K-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (498)
Q Consensus 90 L~~q~~~~l~~---------------~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~ 153 (498)
|++|+.+.+.. . ++.+...++......+...... ...|+++|||.+..-.....+.
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~------~p~IlVtTPE~L~~ll~~~~~~-- 167 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK------PPHILITTPESLAILLNSPKFR-- 167 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC------CCCEEEecHHHHHHHhcChhHH--
Confidence 99999876542 1 4556677777766655443321 2689999999663110000111
Q ss_pred hhcCCccEEEEecccccccc--CCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCC------CCCe-EE
Q 010884 154 HSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNPL-VL 223 (498)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~--g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~------~~~~-~~ 223 (498)
.....+++|||||+|.+.+. |..+...+ .++.... ++.+++++|||+++. ..+..++.. ..+. ++
T Consensus 168 ~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L---~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv 242 (876)
T PRK13767 168 EKLRTVKWVIVDEIHSLAENKRGVHLSLSL---ERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIV 242 (876)
T ss_pred HHHhcCCEEEEechhhhccCccHHHHHHHH---HHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEE
Confidence 12345899999999999753 32233333 3344444 578899999999763 234444432 2222 22
Q ss_pred ecCCCCCceEEEEEe----------ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC------CCceEe
Q 010884 224 KSSFNRPNLFYEVRY----------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GISCAA 287 (498)
Q Consensus 224 ~~~~~r~ni~~~v~~----------~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~------g~~~~~ 287 (498)
...+.+ .+...+.. .......+..+.++++. ++++||||+|++.|+.++..|.+. +..+..
T Consensus 243 ~~~~~k-~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 243 DARFVK-PFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred ccCCCc-cceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 222222 12111111 00111233444444443 467999999999999999999873 467999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCceEEEEEc
Q 010884 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (498)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-g~~~~~~~~~~ 363 (498)
+||+|+.++|..+++.|++|+++|||||+++++|||+|+|++||+++.|.|+..|+||+||+||. |..+.+.++..
T Consensus 320 hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999986 44455555544
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=8.5e-42 Score=373.40 Aligned_cols=330 Identities=21% Similarity=0.290 Sum_probs=242.9
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~ 92 (498)
++++++++.+.+.+++ .|+.+|+|+|.++++. +..|++++++||||+|||++|.+|++. .++++|+++|+++|+.
T Consensus 3 ~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~ 81 (737)
T PRK02362 3 IAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALAS 81 (737)
T ss_pred hhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHH
Confidence 5567788899999987 7999999999999998 778999999999999999999998765 5789999999999999
Q ss_pred HHHHHHHHc---CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc
Q 010884 93 NQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (498)
Q Consensus 93 q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (498)
|+...++.+ |+.+..+.+....... .+ ...+|+++|||.+..-.. ........+++|||||+|.
T Consensus 82 q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV~Tpek~~~llr----~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 82 EKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIVATSEKVDSLLR----NGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEEECHHHHHHHHh----cChhhhhhcCEEEEECccc
Confidence 999999886 7777776665432211 01 135788888886532110 0011234589999999999
Q ss_pred ccccCCCChHHHHH-HHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCC------CeEEecC-CCCCceEEEEE----
Q 010884 170 ISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN------PLVLKSS-FNRPNLFYEVR---- 237 (498)
Q Consensus 170 i~~~g~~fr~~~~~-l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~------~~~~~~~-~~r~ni~~~v~---- 237 (498)
+.+.+ +.+.+.. +..++...++.++++||||++.. .++..+++... |..+... +....+.+...
T Consensus 149 l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~ 224 (737)
T PRK02362 149 IDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREV 224 (737)
T ss_pred cCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccC
Confidence 98743 5566655 34555556789999999999753 34566665321 1110000 00000000000
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCC-----------------------------------
Q 010884 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG----------------------------------- 282 (498)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g----------------------------------- 282 (498)
........+..+.+.+. .++++||||+|++.|+.++..|....
T Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 225 EVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 00011223334444443 45789999999999999998886431
Q ss_pred -CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE----eC-----CCCCHHHHHHHHhhcCCC
Q 010884 283 -ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQESGRAGRD 352 (498)
Q Consensus 283 -~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~----~~-----~p~s~~~y~Q~~GRagR~ 352 (498)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ |+ .|.+..+|.||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 35789999999999999999999999999999999999999999999997 66 688999999999999999
Q ss_pred CCC--ceEEEEEccch
Q 010884 353 QLP--SKSLLYYGMDD 366 (498)
Q Consensus 353 g~~--~~~~~~~~~~d 366 (498)
|.. |.++++....+
T Consensus 383 g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 383 GLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCceEEEEecCch
Confidence 975 88999887653
No 40
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6e-42 Score=389.95 Aligned_cols=333 Identities=16% Similarity=0.213 Sum_probs=260.3
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
-+++.+.+++.+|| +|++.|+++++.++.|+|++++||||+|||++++++++. .+.++|||+||++|+.|++..++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 35677788888999 699999999999999999999999999999987776653 35689999999999999999998
Q ss_pred Hc------CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 010884 100 EK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 100 ~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (498)
.+ ++.+..++++.....+......+..+. ++|+++||+.+... +..+ . ...+++|||||||++++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~~--~~~l---~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLARN--FPEM---K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHHh--HHHH---h-hCCCCEEEEECceecccc
Confidence 84 456677888888877777777776654 78999999865421 1111 1 155999999999999999
Q ss_pred CC---------CChHHHHH----H-------------------HHHHHhCCCCC--EEEEeecCChHHHHHHHHHhCCCC
Q 010884 174 GH---------DFRPSYRK----L-------------------SSLRNYLPDVP--ILALTATAAPKVQKDVMESLCLQN 219 (498)
Q Consensus 174 g~---------~fr~~~~~----l-------------------~~l~~~~~~~~--~l~lSAT~~~~~~~~i~~~l~~~~ 219 (498)
|+ +|++++.. + ......+|..+ .+.+|||.++. .++...+ ..
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 88 89999864 2 11122334433 46689998864 2223322 45
Q ss_pred CeEEecCCCCCceEEEE---EeecchhhHHHHHHHHHHhcCCccEEEEeCccch---HHHHHHHHHhCCCceEeecCCCC
Q 010884 220 PLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 220 ~~~~~~~~~r~ni~~~v---~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~---~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
+..+..+..++++...+ ..... ..+ ..+.++++.. +..+||||+|++. |+++++.|.+.|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 55566666665543322 22221 222 5677777766 4579999999886 589999999999999999995
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeC----ccccccccCC-ccEEEEeCCCC---CHHHHHHHH-------------hhcCCC
Q 010884 294 DKARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRD 352 (498)
Q Consensus 294 ~~~R~~~~~~f~~g~~~vlvaT~----a~~~GiD~p~-v~~VI~~~~p~---s~~~y~Q~~-------------GRagR~ 352 (498)
|...+++|++|+++|||||+ .++||||+|+ |++|||||+|+ |++.|+|.. |||||+
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 88999999999999999995 6789999999 99999999999 999999988 999999
Q ss_pred CCCceEEEEEccchHHHHHHHHHh
Q 010884 353 QLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 353 g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
|.++.+++.+...+...++.+++.
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHHhcc
Confidence 999999988888888888877664
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.4e-41 Score=360.66 Aligned_cols=316 Identities=21% Similarity=0.258 Sum_probs=246.1
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g------~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q 93 (498)
...+.+.+...++|. ||+.|+++++.+..+ .+++++||||||||++|++|++. .+..++|++||++|+.|
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQ 325 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHH
Confidence 356667777779995 999999999999876 37999999999999999998864 56789999999999999
Q ss_pred HHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc
Q 010884 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (498)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (498)
+.+.++++ |+.+..++++.....+......+..+. .+++++||..+... .....++++||||+|+
T Consensus 326 ~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~~~---------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 326 HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQDD---------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhccc---------chhcccceEEEechhh
Confidence 99998874 688999999999888888888888775 77888887655321 2234589999999998
Q ss_pred ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-CCCCCceEEEEEeecchhhHHHH
Q 010884 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (498)
Q Consensus 170 i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ni~~~v~~~~~~~~~~~~ 248 (498)
+ |...|. .+.....+.++++||||+.+..... ...+..+...+.. +..+..+...+.........+..
T Consensus 395 f---g~~qr~------~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~ 463 (681)
T PRK10917 395 F---GVEQRL------ALREKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYER 463 (681)
T ss_pred h---hHHHHH------HHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHH
Confidence 5 333332 2333344688999999998876542 2233333333322 33344555444443333333344
Q ss_pred HHHHHHhcCCccEEEEeCccc--------hHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc
Q 010884 249 LCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (498)
Q Consensus 249 l~~~l~~~~~~~~IVf~~t~~--------~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~ 318 (498)
+...+. .+.+++|||++++ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+++|||||+++
T Consensus 464 i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 464 IREEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 444442 3568999999653 456778888765 5789999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
++|||+|++++||+++.|. +...|.|++||+||.|..|.|++++.
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999997 68899999999999999999999995
No 42
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-42 Score=331.13 Aligned_cols=347 Identities=20% Similarity=0.293 Sum_probs=285.2
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----------CCeEE
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-----------~~~~l 82 (498)
...|..+...+.+...+++ -.|.+++|.|.++++..+.|+||+.+|-||+|||.+|++|++.. ++..|
T Consensus 222 vtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~v 300 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGV 300 (731)
T ss_pred cchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEE
Confidence 4456667777888888887 58999999999999999999999999999999999999999742 56789
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH--hhhhc
Q 010884 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSR 156 (498)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~--~~~~~ 156 (498)
+++||++|+.|....++++ |+....+.++.+..+....++ .+ ..+ +++||+++-.+. +..+.
T Consensus 301 ilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g---~Ei------vVaTPgRlid~VkmKatn~ 368 (731)
T KOG0339|consen 301 ILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EG---AEI------VVATPGRLIDMVKMKATNL 368 (731)
T ss_pred EEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cC---CeE------EEechHHHHHHHHhhcccc
Confidence 9999999999999888774 888888888887766544333 22 444 455566555553 34456
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCe-EEecCCC--CCceE
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFN--RPNLF 233 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~--r~ni~ 233 (498)
.++.++|||||++|.+.| |.+..+.|.. ...|+.|.|+||||....+.+.....|. .|+ ++..+.. -..|.
T Consensus 369 ~rvS~LV~DEadrmfdmG--fe~qVrSI~~--hirpdrQtllFsaTf~~kIe~lard~L~--dpVrvVqg~vgean~dIT 442 (731)
T KOG0339|consen 369 SRVSYLVLDEADRMFDMG--FEPQVRSIKQ--HIRPDRQTLLFSATFKKKIEKLARDILS--DPVRVVQGEVGEANEDIT 442 (731)
T ss_pred eeeeEEEEechhhhhccc--cHHHHHHHHh--hcCCcceEEEeeccchHHHHHHHHHHhc--CCeeEEEeehhccccchh
Confidence 678999999999999999 7777766643 3348999999999999998886666554 444 3333333 33455
Q ss_pred EEEEeecchhhHHHHHHHHHHh-cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEE
Q 010884 234 YEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (498)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 312 (498)
..|......+.|+..|...|-. ...+++|||+.-+..++.++..|...|+++..+||++.+.+|.+++.+|+.+..+||
T Consensus 443 Q~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vl 522 (731)
T KOG0339|consen 443 QTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVL 522 (731)
T ss_pred heeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceE
Confidence 5666666667788887776654 345789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhccc
Q 010884 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (498)
Q Consensus 313 vaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (498)
|||+...+|+|+|+++.||+||+-.+++.|.||+||+||.|..|.+++|++..|....-.+++....
T Consensus 523 vatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ 589 (731)
T KOG0339|consen 523 VATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEG 589 (731)
T ss_pred EEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999988888776543
No 43
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.3e-40 Score=355.01 Aligned_cols=316 Identities=20% Similarity=0.247 Sum_probs=237.9
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHH
Q 010884 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (498)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g------~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~ 92 (498)
....+...+.+.++| +|++.|+++|+.++.+ .+.++++|||+|||++|++|++. .+..++|++||++|+.
T Consensus 220 ~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 220 PSEELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAE 298 (630)
T ss_pred CChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHH
Confidence 333444455556899 6999999999999876 25899999999999999988764 5678999999999999
Q ss_pred HHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 93 q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
|+.+.++++ |+.+..++++.....+......+..+. .+++++||..+.. ......++++||||+|
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~~---------~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQE---------KVEFKRLALVIIDEQH 367 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHhc---------cccccccceEEEechh
Confidence 999998874 688999999988888888888887775 6788888765532 1234568999999999
Q ss_pred cccccCCCChHHHHHHHHHHHhCC---CCCEEEEeecCChHHHHHHHHHhCCCCCeEE-ecCCCCCceEEEEEeecchhh
Q 010884 169 CISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNLFYEVRYKDLLDD 244 (498)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~ni~~~v~~~~~~~~ 244 (498)
++ |...|.. ++...+ +.++++||||+.+..... ...+......+ ..+..+..+...+........
T Consensus 368 ~f---g~~qr~~------l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~ 436 (630)
T TIGR00643 368 RF---GVEQRKK------LREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDEKDI 436 (630)
T ss_pred hc---cHHHHHH------HHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcchHHH
Confidence 84 4333332 333333 678999999998865442 21221122222 122333444444433322222
Q ss_pred HHHHHHHHHHhcCCccEEEEeCcc--------chHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEE
Q 010884 245 AYADLCSVLKANGDTCAIVYCLER--------TTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (498)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IVf~~t~--------~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlva 314 (498)
.+..+.+.+. .+.+++|||++. ..++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+||||
T Consensus 437 ~~~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 437 VYEFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred HHHHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 2333333332 356799999876 4566778888763 788999999999999999999999999999999
Q ss_pred eCccccccccCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEE
Q 010884 315 TVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (498)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~~~~~ 362 (498)
|+++++|||+|++++||+++.|. +...|.|++||+||.|+.|.|++++
T Consensus 515 T~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 515 TTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999999999987 7899999999999999999999999
No 44
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.3e-43 Score=330.50 Aligned_cols=333 Identities=21% Similarity=0.352 Sum_probs=255.7
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc--------------CCC
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------KPG 79 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~--------------~~~ 79 (498)
-..|.++.....+++.|++ -|+.+|+|+|.+.++-++.|+|.+..|-||||||++|.+|.+. .++
T Consensus 169 IksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred hhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 3455666677889999998 6999999999999999999999999999999999999999763 256
Q ss_pred eEEEeCcHHHHHHHHHHHHHH-------cCCc---eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHH
Q 010884 80 IVLVVSPLIALMENQVIGLKE-------KGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149 (498)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~-------~gi~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~ 149 (498)
..|||||+++|+.|..+-+.. .|.+ ...-.++....... ..+..+ +.+ +++||+++..
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql---~~v~~G---vHi------vVATPGRL~D 315 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQL---DVVRRG---VHI------VVATPGRLMD 315 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHH---HHHhcC---eeE------EEcCcchHHH
Confidence 789999999999887655433 3332 22222333333322 222222 444 5667776666
Q ss_pred HH--hhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC-
Q 010884 150 LK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS- 226 (498)
Q Consensus 150 l~--~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~- 226 (498)
+. +..++.-.+++++|||+++.++| |..+++.+-.+-+ ..+|.++||||++...+... .-.+-.|+.+..+
T Consensus 316 mL~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~iF~~FK--~QRQTLLFSATMP~KIQ~FA--kSALVKPvtvNVGR 389 (610)
T KOG0341|consen 316 MLAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTIFSFFK--GQRQTLLFSATMPKKIQNFA--KSALVKPVTVNVGR 389 (610)
T ss_pred HHHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHHHHHHh--hhhheeeeeccccHHHHHHH--HhhcccceEEeccc
Confidence 53 23334446789999999999999 7766665533322 36889999999999887633 3344566655332
Q ss_pred --CCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHH
Q 010884 227 --FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (498)
Q Consensus 227 --~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 304 (498)
...-|+...+.+... +.++-.|++.|++. ..+++|||..+.+++.+.++|--.|..++.+|||-++++|...++.|
T Consensus 390 AGAAsldViQevEyVkq-EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~af 467 (610)
T KOG0341|consen 390 AGAASLDVIQEVEYVKQ-EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAF 467 (610)
T ss_pred ccccchhHHHHHHHHHh-hhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHH
Confidence 222233333333322 45667777777665 45799999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 305 ~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
+.|+.+|||||++++.|+|+|++.+|||||+|..+++|+||+||+||.|+.|.+.+|.+....
T Consensus 468 r~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 468 RAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred hcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999999986543
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.5e-40 Score=366.87 Aligned_cols=319 Identities=21% Similarity=0.202 Sum_probs=246.0
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHHH
Q 010884 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIAL 90 (498)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g------~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~L 90 (498)
++++......+...|+| ++++.|.+||+.++.+ +|+++++|||+|||.+|+.+++ ..+..++|++||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 45556677777778999 5999999999999987 7999999999999998887654 457899999999999
Q ss_pred HHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEec
Q 010884 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (498)
Q Consensus 91 ~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDE 166 (498)
+.|++..+++ +++.+..+++..+...+..++..+..+. .+++++||+.+.. ......++++||||
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~~---------~v~~~~L~lLVIDE 730 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQS---------DVKWKDLGLLIVDE 730 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHhC---------CCCHhhCCEEEEec
Confidence 9999999886 3466777888888888777777776654 7889998865421 12234589999999
Q ss_pred cccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCC-CCCceEEEEEeecchhhH
Q 010884 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKDLLDDA 245 (498)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~ni~~~v~~~~~~~~~ 245 (498)
+|++ |.. ....+....+++++++||||+.+.+.... ..++.++.++..+. .+..+...+...... ..
T Consensus 731 ahrf---G~~------~~e~lk~l~~~~qvLl~SATpiprtl~l~--~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~ 798 (1147)
T PRK10689 731 EHRF---GVR------HKERIKAMRADVDILTLTATPIPRTLNMA--MSGMRDLSIIATPPARRLAVKTFVREYDSL-VV 798 (1147)
T ss_pred hhhc---chh------HHHHHHhcCCCCcEEEEcCCCCHHHHHHH--HhhCCCcEEEecCCCCCCCceEEEEecCcH-HH
Confidence 9995 432 22334444568999999999999886633 33456666654432 233343322222211 11
Q ss_pred HHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccc
Q 010884 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (498)
Q Consensus 246 ~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD 323 (498)
...+...+. .+++++||||+++.++.+++.|.+. +.++..+||+|++++|..++.+|++|+++|||||+++++|||
T Consensus 799 k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 799 REAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 222322222 2567999999999999999999987 788999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCC-CCHHHHHHHHhhcCCCCCCceEEEEEcc
Q 010884 324 RKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 324 ~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
+|+|++||..+.. .++.+|+|++||+||.|+.|.|++++..
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999955443 3567899999999999999999999854
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=351.12 Aligned_cols=323 Identities=25% Similarity=0.317 Sum_probs=258.2
Q ss_pred ChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---C--------CeEEEeCcHHH
Q 010884 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---P--------GIVLVVSPLIA 89 (498)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~---~--------~~~lvl~P~~~ 89 (498)
.+++.+.+++++. |.+|||.|.+||+.+.+|+++++.||||+|||+++.+|++.. . -.+|+|+|++|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 3456788888885 889999999999999999999999999999999999998731 1 25899999999
Q ss_pred HHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccc----cChhhHHHHHhhhhcCCccE
Q 010884 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNL 161 (498)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v----~t~~~~~~l~~~~~~~~l~~ 161 (498)
|.+|+.++|.. +|+++...++.++...+..... ...+||++|||.+ ..+.+...+ ..+.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~------~PPdILiTTPEsL~lll~~~~~r~~l------~~vr~ 152 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK------NPPHILITTPESLAILLNSPKFRELL------RDVRY 152 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC------CCCcEEEeChhHHHHHhcCHHHHHHh------cCCcE
Confidence 99999999766 6899989999988887765432 2389999999943 334443333 34889
Q ss_pred EEEecccccc--ccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCC-CeEEecCCCCCceEEEEEe
Q 010884 162 VAIDEAHCIS--SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRY 238 (498)
Q Consensus 162 iViDEaH~i~--~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~r~ni~~~v~~ 238 (498)
+||||.|.+. ..|... +..|.++....++.|.++||||..+. ..+.++|.... +..+.......+..+.+..
T Consensus 153 VIVDEiHel~~sKRG~~L---sl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~ 227 (814)
T COG1201 153 VIVDEIHALAESKRGVQL---ALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVIS 227 (814)
T ss_pred EEeehhhhhhccccchhh---hhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEe
Confidence 9999999985 456432 24566777777789999999999855 35677776664 4433332222233333332
Q ss_pred ec--------chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCC-CceEeecCCCCHHHHHHHHHHHHcCCC
Q 010884 239 KD--------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRK 309 (498)
Q Consensus 239 ~~--------~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (498)
.. .....+..+.++++++. .+|||+|||..++.++..|.+.+ ..+..+||.++.+.|..+.++|++|+.
T Consensus 228 p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 228 PVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred cCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 21 11345677788887764 79999999999999999999987 889999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCceEEEEEcc
Q 010884 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYGM 364 (498)
Q Consensus 310 ~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-g~~~~~~~~~~~ 364 (498)
+++|||+.++.|||+.+|+.|||++.|+++..++||+||+|+. |..+.++++...
T Consensus 306 ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 306 KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999999999999999974 566778777655
No 47
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-41 Score=326.81 Aligned_cols=354 Identities=22% Similarity=0.292 Sum_probs=250.1
Q ss_pred ccccCCCCChhHHHH----------HHHHHhcCCCCCCHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHh
Q 010884 13 QTQKNKPLHEKEALV----------KLLRWHFGHAQFRDKQLDAIQAVLS---------GRDCFCLMPTGGGKSMCYQIP 73 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~----------~~l~~~fg~~~~~~~Q~~~i~~i~~---------g~dvlv~apTG~GKTl~~~l~ 73 (498)
+...|+.++.++... +.+.+ .+++.+.|.|..+++.++. ++|++|.||||||||++|.+|
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iP 203 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIP 203 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhH
Confidence 344555555554433 33665 6999999999999999862 579999999999999999999
Q ss_pred HhcC-------CCeEEEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCC--cccEEEECccc
Q 010884 74 ALAK-------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKP--SLRLLYVTPEL 140 (498)
Q Consensus 74 ~l~~-------~~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~tpe~ 140 (498)
+++. .-++|||+|++.|+.|.++.+.++ |+.+..+.+....... ...+....+ .++|+++||-.
T Consensus 204 IVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E---~~qL~~~~~~~~~DIlVaTPGR 280 (620)
T KOG0350|consen 204 IVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDE---ARQLASDPPECRIDILVATPGR 280 (620)
T ss_pred HHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHH---HHHHhcCCCccccceEEcCchH
Confidence 9752 246899999999999999999986 4444444433333222 222322222 35666555543
Q ss_pred ccChhhHHHHH--hhhhcCCccEEEEeccccccc-----cC--------CC-------------ChHHHHHHHHHHHh--
Q 010884 141 TATPGFMSKLK--KIHSRGLLNLVAIDEAHCISS-----WG--------HD-------------FRPSYRKLSSLRNY-- 190 (498)
Q Consensus 141 v~t~~~~~~l~--~~~~~~~l~~iViDEaH~i~~-----~g--------~~-------------fr~~~~~l~~l~~~-- 190 (498)
+. ..+. +...+..++++|||||+++.+ |- +. +-+.-..+..+...
T Consensus 281 LV-----DHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~ 355 (620)
T KOG0350|consen 281 LV-----DHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLG 355 (620)
T ss_pred HH-----HhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcC
Confidence 32 1221 223455589999999999865 21 00 00000111122222
Q ss_pred --CCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCC------CCCc-e-EEEEEeecchhhHHHHHHHHHHhcCCcc
Q 010884 191 --LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------NRPN-L-FYEVRYKDLLDDAYADLCSVLKANGDTC 260 (498)
Q Consensus 191 --~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------~r~n-i-~~~v~~~~~~~~~~~~l~~~l~~~~~~~ 260 (498)
+|....+.+|||++..-.. ...+.+..|..+.... ..|. + .+.+.... .-+--.+..+++.....+
T Consensus 356 ~~~~~l~kL~~satLsqdP~K--l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~--~~kpl~~~~lI~~~k~~r 431 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSK--LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP--KFKPLAVYALITSNKLNR 431 (620)
T ss_pred CcCchhHhhhcchhhhcChHH--HhhhhcCCCceEEeecccceeeecChhhhhceeeccc--ccchHhHHHHHHHhhcce
Confidence 2344478888888766544 4555666664433221 1111 1 11111111 123445667777777889
Q ss_pred EEEEeCccchHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCC
Q 010884 261 AIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (498)
Q Consensus 261 ~IVf~~t~~~~~~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p 336 (498)
+|+|+++...+.+++..|. ....++..|.|+++.+.|...++.|..|+++|||||+++++|||+.+|+.||+||+|
T Consensus 432 ~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P 511 (620)
T KOG0350|consen 432 TLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPP 511 (620)
T ss_pred EEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCC
Confidence 9999999999999999887 346677889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhccc
Q 010884 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (498)
Q Consensus 337 ~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (498)
.+...|+||+||++|+|+.|.|+.+....+.+.+..+++....
T Consensus 512 ~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 512 ASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred chhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999886543
No 48
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=329.81 Aligned_cols=340 Identities=19% Similarity=0.258 Sum_probs=262.9
Q ss_pred ChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----------CCeEEEeCcHHH
Q 010884 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLIA 89 (498)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-----------~~~~lvl~P~~~ 89 (498)
..++.+++.+.. .||..++|.|.+|++-++.+++++.++|||+|||++|.+|++.+ +-.++|++|+++
T Consensus 142 ~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptre 220 (593)
T KOG0344|consen 142 SMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRE 220 (593)
T ss_pred hhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHH
Confidence 335667777776 69999999999999999999999999999999999999999853 246899999999
Q ss_pred HHHHHHHHHHHcCCc------eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhh----hhcCCc
Q 010884 90 LMENQVIGLKEKGIA------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (498)
Q Consensus 90 L~~q~~~~l~~~gi~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~----~~~~~l 159 (498)
|+.|...++.++.+. +..+........+..... ...+++++.| |..+-.+... .....+
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~-----~~k~dili~T------P~ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS-----DEKYDILIST------PMRIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH-----HHHHHHHhcC------HHHHHHHhcCCCccchhhee
Confidence 999999999997643 111111111111111111 1124554444 4443333333 245568
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC---CCceEEEE
Q 010884 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEV 236 (498)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~~v 236 (498)
..+|+|||+.+.+. ..|+.....+...+.. |++.+-+||||.+..+.+ +..+.+.++..+..+.. ...+....
T Consensus 290 ~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE--~~~~i~~~~~~vivg~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 290 EWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEE--WAELIKSDLKRVIVGLRNSANETVDQEL 365 (593)
T ss_pred eeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHH--HHHHhhccceeEEEecchhHhhhhhhhh
Confidence 89999999999886 2366555555444333 788899999999999877 33344444443333222 22344455
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHH-HhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEe
Q 010884 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (498)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L-~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT 315 (498)
.+......++-.+.+++...-..+++||+.+.+.|.+|...| .-.++.+..+||..++.+|.+++++|+.|+++||+||
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 555555678888899998877889999999999999999999 6678999999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
+.+++|||+.+|+.||+||+|.+..+|+||+||+||+|+.|.+++||+..|...++-+..-
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999888776553
No 49
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-40 Score=316.16 Aligned_cols=342 Identities=21% Similarity=0.317 Sum_probs=269.8
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCc
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P 86 (498)
-.+.|+++.+++++++.+.. +||+.|+.+|+.||..+.+|.|++.++++|+|||.+|.+++++. ...++++.|
T Consensus 24 vvdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 36789999999999999997 89999999999999999999999999999999999999999875 456899999
Q ss_pred HHHHHHHHHHHHHHcCCc----eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcCCcc
Q 010884 87 LIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (498)
Q Consensus 87 ~~~L~~q~~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~~l~ 160 (498)
+++|+.|.......+|-. +....++....... ..+.... ..+ ++.||++...+.+ ......+.
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~---~~i~~~~--~hi------vvGTpgrV~dml~~~~l~~~~iK 171 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRRED---QALLKDK--PHI------VVGTPGRVFDMLNRGSLSTDGIK 171 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchhhh---hhhhccC--cee------ecCCchhHHHhhcccccccccee
Confidence 999999999887776543 22222222222111 1111111 223 5666766555532 22344589
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC---CCceEEEE
Q 010884 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEV 236 (498)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~~v 236 (498)
++|+|||+.+...| |+..+..+ .+.. ++.|++++|||.++.+..- ..-.+.+|..+....+ ...+....
T Consensus 172 mfvlDEaDEmLs~g--fkdqI~~i---f~~lp~~vQv~l~SAT~p~~vl~v--t~~f~~~pv~i~vkk~~ltl~gikq~~ 244 (397)
T KOG0327|consen 172 MFVLDEADEMLSRG--FKDQIYDI---FQELPSDVQVVLLSATMPSDVLEV--TKKFMREPVRILVKKDELTLEGIKQFY 244 (397)
T ss_pred EEeecchHhhhccc--hHHHHHHH---HHHcCcchhheeecccCcHHHHHH--HHHhccCceEEEecchhhhhhheeeee
Confidence 99999999999987 77666555 3334 4899999999999998773 3334566665433222 22222222
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
..... +.|+..|..+.+ .-.+.+|||||++.+..+...|...|..+..+||.|.+.+|..+++.|++|..+|||.|+
T Consensus 245 i~v~k-~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd 321 (397)
T KOG0327|consen 245 INVEK-EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD 321 (397)
T ss_pred eeccc-cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecc
Confidence 22222 237778888877 345689999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
.+++|+|+.++..||+|++|...++|+||+||+||.|.+|.++.++...|...++.+.+.
T Consensus 322 l~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred ccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHh
Confidence 999999999999999999999999999999999999999999999999999988877653
No 50
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=348.22 Aligned_cols=344 Identities=21% Similarity=0.349 Sum_probs=276.2
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-----------CCCeEEE
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVLV 83 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-----------~~~~~lv 83 (498)
.+|...++...++..+++ +||..++|+|.+|||+|+.|+|||.+|-||+|||++|++|++. .++.+||
T Consensus 365 ~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred chHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 345556777899999965 8999999999999999999999999999999999999999983 2678999
Q ss_pred eCcHHHHHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH--H---hhh
Q 010884 84 VSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--K---KIH 154 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l--~---~~~ 154 (498)
++||++|+.|..+.++. +++.+....++...... ...+..+ ..|+++||- .+-.+ . +..
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg---~eIvV~tpG------RmiD~l~~n~grvt 511 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG---AEIVVCTPG------RMIDILCANSGRVT 511 (997)
T ss_pred EcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC---CceEEeccc------hhhhhHhhcCCccc
Confidence 99999999999888776 47777777766655443 2334443 455555554 33322 1 222
Q ss_pred hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC---CCCCc
Q 010884 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPN 231 (498)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~n 231 (498)
++.++.++|+|||+++.+.| |.|....| +....|..|.+++|||.+..+...-...+. .|+.+... .--..
T Consensus 512 nlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 512 NLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSVVCKE 585 (997)
T ss_pred cccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEccceeEecc
Confidence 33445699999999999888 77776664 444457999999999999987665555555 44433222 12234
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhc-CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCe
Q 010884 232 LFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (498)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (498)
+...+......+.++..|.++|... ...++||||.....|+.+.+.|.+.|+.|..+||+.++.+|..+++.|++|.+.
T Consensus 586 V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 586 VTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred ceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce
Confidence 4455555554578899999998653 467899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 311 vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
+||||+.+++|+|++++.+||||++|...+.|+||.||+||.|+.|.|++|..+.+......|.+..
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998777766666554
No 51
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-39 Score=354.04 Aligned_cols=323 Identities=22% Similarity=0.281 Sum_probs=234.5
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~ 91 (498)
+.++++++.+.+.|++ .|+.+|+|+|.++++. ++.|+++++++|||+|||++|.+|++. .++++|+|+|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4556788999999998 7999999999999986 789999999999999999999998763 467999999999999
Q ss_pred HHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.|++..++. +|+.+..+++....... . + ...+++++|||.+..- .. ........+++|||||+|
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~---~----~~~~IiV~Tpe~~~~l--l~--~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDE--W---L----GKYDIIIATAEKFDSL--LR--HGSSWIKDVKLVVADEIH 148 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchh--h---h----ccCCEEEEcHHHHHHH--Hh--CCchhhhcCCEEEEcCcC
Confidence 999988875 47777777766543211 1 1 1367888888865321 10 011123558999999999
Q ss_pred cccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCc-e----EEEE--Eeec
Q 010884 169 CISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-L----FYEV--RYKD 240 (498)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n-i----~~~v--~~~~ 240 (498)
.+.+++ +.+.+..+ ... .++.+++++|||++.. .++..+++... +. +..+|. + .+.. ....
T Consensus 149 ~l~~~~--rg~~le~i---l~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~-~~~rpv~l~~~~~~~~~~~~~~ 217 (720)
T PRK00254 149 LIGSYD--RGATLEMI---LTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VV-SDWRPVKLRKGVFYQGFLFWED 217 (720)
T ss_pred ccCCcc--chHHHHHH---HHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---cc-CCCCCCcceeeEecCCeeeccC
Confidence 998765 33444433 333 3578999999999753 45666665421 11 111221 1 1100 0000
Q ss_pred c-----hhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC---------------------------------C
Q 010884 241 L-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------G 282 (498)
Q Consensus 241 ~-----~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~---------------------------------g 282 (498)
. .......+.+.++. ++++||||+|++.|+.++..|... .
T Consensus 218 ~~~~~~~~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (720)
T PRK00254 218 GKIERFPNSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR 295 (720)
T ss_pred cchhcchHHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh
Confidence 0 01112333444443 568999999999999888776421 2
Q ss_pred CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE-------eCCCC-CHHHHHHHHhhcCCCC-
Q 010884 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRDQ- 353 (498)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~-------~~~p~-s~~~y~Q~~GRagR~g- 353 (498)
..+.+|||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|. +..+|.||+|||||.|
T Consensus 296 ~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 296 GGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred hCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 35899999999999999999999999999999999999999999999994 45444 6789999999999976
Q ss_pred -CCceEEEEEccch
Q 010884 354 -LPSKSLLYYGMDD 366 (498)
Q Consensus 354 -~~~~~~~~~~~~d 366 (498)
..|.++++....+
T Consensus 376 d~~G~~ii~~~~~~ 389 (720)
T PRK00254 376 DEVGEAIIVATTEE 389 (720)
T ss_pred CCCceEEEEecCcc
Confidence 5688999987655
No 52
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.7e-40 Score=326.64 Aligned_cols=341 Identities=19% Similarity=0.259 Sum_probs=274.9
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCc
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P 86 (498)
.+..|+.+.+-..++..|++ -||..++++|..||++++.+-|+||++..|+|||++|.+.++.. ....+||+|
T Consensus 23 ~~~~fe~l~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 45677778888899999997 59999999999999999999999999999999999998777643 467899999
Q ss_pred HHHHHHHHHHHHHHcCC-----ceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH--hhhhcCCc
Q 010884 87 LIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (498)
Q Consensus 87 ~~~L~~q~~~~l~~~gi-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~--~~~~~~~l 159 (498)
||+|+.|....+.+.++ .+..+.++........-... .+| ++.|||++..|. ...+.+.+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-------~rI------vIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-------TRI------VIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-------ceE------EecCchHHHHHHHhcCCCccce
Confidence 99999999999888644 55556665554433222221 445 556667666663 44556779
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceE----E
Q 010884 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF----Y 234 (498)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~----~ 234 (498)
+++|+|||+.+.+-+. |+. .+..+...+| ..|++++|||-+...-..+.+. |.+|..++.+...+.++ |
T Consensus 169 rlfVLDEADkL~~t~s-fq~---~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~GikQy 242 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTES-FQD---DINIIINSLPQIRQVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIKQY 242 (980)
T ss_pred eEEEeccHHhhhchhh-HHH---HHHHHHHhcchhheeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechhhe
Confidence 9999999999998663 664 4455666666 7899999999999887766554 56777776665555442 1
Q ss_pred EEEeec------chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCC
Q 010884 235 EVRYKD------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (498)
Q Consensus 235 ~v~~~~------~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (498)
.+.... ....++..|-++++..+-.++||||+....|+-++.+|...|+.|.++.|.|++++|..++..++.-.
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce
Confidence 111111 12347788888888888889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH-HHHHHH
Q 010884 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (498)
Q Consensus 309 ~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~-~~~~~~ 373 (498)
++|||+|+..++|||-++|.+||+.|+|.+.++|.||+|||||.|..|.+++|+..... +.+..+
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999886654 443333
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-38 Score=344.55 Aligned_cols=336 Identities=21% Similarity=0.220 Sum_probs=232.9
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q 93 (498)
+.++++.+.+.+.+.. .|+. ++|+|.++++.+..++++++++|||+|||+++.++++. .++++|+++|+++|+.|
T Consensus 3 ~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q 80 (674)
T PRK01172 3 ISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAME 80 (674)
T ss_pred HhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHH
Confidence 4556778899999987 5886 99999999999999999999999999999999887754 47889999999999999
Q ss_pred HHHHHHH---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccc
Q 010884 94 QVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (498)
Q Consensus 94 ~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (498)
+.+.+++ .|..+....+....... . + ...+++++|||.+..-.. ........+++|||||||++
T Consensus 81 ~~~~~~~l~~~g~~v~~~~G~~~~~~~--~---~----~~~dIiv~Tpek~~~l~~----~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 81 KYEELSRLRSLGMRVKISIGDYDDPPD--F---I----KRYDVVILTSEKADSLIH----HDPYIINDVGLIVADEIHII 147 (674)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCCChh--h---h----ccCCEEEECHHHHHHHHh----CChhHHhhcCEEEEecchhc
Confidence 9998875 46666655544322111 0 1 126788888875432110 01112345899999999999
Q ss_pred cccCCCChHHHHHHHH-HHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEe-----ecchhh
Q 010884 171 SSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-----KDLLDD 244 (498)
Q Consensus 171 ~~~g~~fr~~~~~l~~-l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~-----~~~~~~ 244 (498)
.+.+ +.+.+..+.. ++...++.+++++|||+++. .++..+++... +...+....+...+.. .+....
T Consensus 148 ~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~~~~ 220 (674)
T PRK01172 148 GDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDGYER 220 (674)
T ss_pred cCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeeccccc
Confidence 8644 4445554432 33344688999999999753 45566664321 2112211112111111 000000
Q ss_pred HHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCC-------------------------CceEeecCCCCHHHH
Q 010884 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG-------------------------ISCAAYHAGLNDKAR 297 (498)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g-------------------------~~~~~~h~~l~~~~R 297 (498)
....+..++.. ..++++||||+|++.|+.++..|.+.. ..+..+||+|+.++|
T Consensus 221 ~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR 300 (674)
T PRK01172 221 SQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQR 300 (674)
T ss_pred ccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHH
Confidence 00112222322 235789999999999999999886531 247889999999999
Q ss_pred HHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC---------CCCHHHHHHHHhhcCCCCC--CceEEEEEccch
Q 010884 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYGMDD 366 (498)
Q Consensus 298 ~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~---------p~s~~~y~Q~~GRagR~g~--~~~~~~~~~~~d 366 (498)
..+++.|++|.++|||||+++++|||+|+.++|| .+. |-+..+|.||+|||||.|. .|.++++....+
T Consensus 301 ~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 301 RFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999999999999999999865555 443 4589999999999999985 556777755433
Q ss_pred -HHHHHHHHH
Q 010884 367 -RRRMEFILS 375 (498)
Q Consensus 367 -~~~~~~~~~ 375 (498)
...++.++.
T Consensus 380 ~~~~~~~~l~ 389 (674)
T PRK01172 380 SYDAAKKYLS 389 (674)
T ss_pred cHHHHHHHHc
Confidence 455555553
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.1e-37 Score=347.16 Aligned_cols=291 Identities=23% Similarity=0.276 Sum_probs=208.8
Q ss_pred EEcCCCchHHHHHHHhHhcC----------------CCeEEEeCcHHHHHHHHHHHHHH----------------cCCce
Q 010884 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (498)
Q Consensus 58 v~apTG~GKTl~~~l~~l~~----------------~~~~lvl~P~~~L~~q~~~~l~~----------------~gi~~ 105 (498)
|++|||||||++|.+|++.+ ..++|||+|+++|++|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998631 24799999999999999998863 35677
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc--cCCCChHHHHH
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRK 183 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~ 183 (498)
...+++.....+..... . ..+|+++|||.+..- +.. ........+++|||||+|.+.. +|..+...+.+
T Consensus 81 ~vrtGDt~~~eR~rll~----~--ppdILVTTPEsL~~L--Lts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeR 151 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----N--PPDILITTPESLYLM--LTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLER 151 (1490)
T ss_pred EEEECCCCHHHHHHHhc----C--CCCEEEecHHHHHHH--Hhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHH
Confidence 77888877776654332 1 268999999966321 000 0112345699999999999975 67666655555
Q ss_pred HHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC-CCCC-ceEEEEEeecch------------------h
Q 010884 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRP-NLFYEVRYKDLL------------------D 243 (498)
Q Consensus 184 l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~-ni~~~v~~~~~~------------------~ 243 (498)
|..+.. .+.|+|+||||..+. +++.++|+...+..+... ..++ ++.+.+...+.. .
T Consensus 152 L~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~ 227 (1490)
T PRK09751 152 LDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREG 227 (1490)
T ss_pred HHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhh
Confidence 544422 368999999999874 467777876555433322 2222 222222111100 0
Q ss_pred h----HHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCC---------------------------------CceE
Q 010884 244 D----AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------ISCA 286 (498)
Q Consensus 244 ~----~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g---------------------------------~~~~ 286 (498)
. ....+...+. .+.++||||||++.|+.++..|++.. ..+.
T Consensus 228 ~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 305 (1490)
T PRK09751 228 SIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIAR 305 (1490)
T ss_pred hhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeee
Confidence 0 0112222222 35689999999999999999997631 1257
Q ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCC-CCCceEEEEEc
Q 010884 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (498)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-g~~~~~~~~~~ 363 (498)
.|||+|+.++|..+++.|++|++++||||+++++|||+++|++||+++.|.|+..|+||+||+||. |..+.++++..
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred eccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999996 33455664433
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-36 Score=323.73 Aligned_cols=317 Identities=16% Similarity=0.142 Sum_probs=215.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcHHHHHHHHHHH
Q 010884 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~-dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~~~L~~q~~~~ 97 (498)
+....+++..||+ |+|+|.++|+.++.|+ ++++.+|||+|||.++.++.+.. ....++++|+++|+.|..+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 4456677777998 9999999999999998 67888999999999655433321 23455577999999999999
Q ss_pred HHHcC---------------------------CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHH-
Q 010884 98 LKEKG---------------------------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK- 149 (498)
Q Consensus 98 l~~~g---------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~- 149 (498)
+.+++ +.+..+.++...... +..+. ....|+++|++++.+..+...
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~---~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDP---HRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcC---CCCcEEEECHHHHcCCcccccc
Confidence 87754 344555555544322 22222 236899999887765332111
Q ss_pred -----HH--hhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC---CCCEEEEeecCChHHHHHHHHHhCCCC
Q 010884 150 -----LK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (498)
Q Consensus 150 -----l~--~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lSAT~~~~~~~~i~~~l~~~~ 219 (498)
+. +....+.+.++|+|||| .+.| |......|.......+ ..++++||||++..+... ...+ +.+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l-~~~~-~~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDR-TTLL-SAE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHH-HHHH-ccC
Confidence 10 11124668999999999 4445 8877766655321122 268999999998776543 2222 222
Q ss_pred CeEEecC---CCCCceEEEEEeecchhhHHHH----HHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCC
Q 010884 220 PLVLKSS---FNRPNLFYEVRYKDLLDDAYAD----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (498)
Q Consensus 220 ~~~~~~~---~~r~ni~~~v~~~~~~~~~~~~----l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l 292 (498)
+..+... ....++.. +.... ...++.. +..++. ..++++||||||++.|+.+++.|.+.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q-~v~v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVK-LVPPS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEE-EEecC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 3222111 11122222 11111 1223322 223333 3456899999999999999999999887 8999999
Q ss_pred CHHHHH-----HHHHHHHc----CC-------CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 010884 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (498)
Q Consensus 293 ~~~~R~-----~~~~~f~~----g~-------~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~ 356 (498)
++.+|. .++++|++ |+ ..|||||+++++|||++. ++||++..| .+.|+||+||+||.|+.+
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 88999987 44 689999999999999986 888887766 799999999999999854
Q ss_pred e-EEEEE
Q 010884 357 K-SLLYY 362 (498)
Q Consensus 357 ~-~~~~~ 362 (498)
. .+.++
T Consensus 382 ~~~i~vv 388 (844)
T TIGR02621 382 ACQIAVV 388 (844)
T ss_pred CceEEEE
Confidence 3 34444
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.1e-36 Score=336.89 Aligned_cols=307 Identities=20% Similarity=0.252 Sum_probs=220.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
+++.+.+++.+|+ .|+++|.++++.++.|+|++++||||+|||..++++++ ..+..++||+||++|+.|+.+.++.
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 4455677777898 79999999999999999999999999999975443332 2467899999999999999999998
Q ss_pred cCC----ceeEecCCCC--HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccC
Q 010884 101 KGI----AGEFLSSTQT--MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (498)
Q Consensus 101 ~gi----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (498)
++. .+..+.++.. ...+......+..+. .+|+++||+.+. ..........++++||||||+++.|+
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~IlV~Tp~rL~------~~~~~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDILVTTSQFLS------KNFDELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEEEECHHHHH------HHHHhccccccCEEEEEChHHhhhcc
Confidence 643 3333333322 333444444555443 677777766543 22223344559999999999999876
Q ss_pred CC---------Ch------------------HHHHHHHHHHHhCC-----CCCEEEEeecCChHHHH-HHHHHhCCCCCe
Q 010884 175 HD---------FR------------------PSYRKLSSLRNYLP-----DVPILALTATAAPKVQK-DVMESLCLQNPL 221 (498)
Q Consensus 175 ~~---------fr------------------~~~~~l~~l~~~~~-----~~~~l~lSAT~~~~~~~-~i~~~l~~~~~~ 221 (498)
++ |. +.|..+..+...+. ..+++++|||+++.... .+...+. ...
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll--~~~ 295 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL--GFE 295 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc--eEE
Confidence 43 42 33444444444332 57899999999875332 2222110 001
Q ss_pred EEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccch---HHHHHHHHHhCCCceEeecCCCCHHHHH
Q 010884 222 VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKARS 298 (498)
Q Consensus 222 ~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~---~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (498)
+-.......|+...+.... ++...+..+++..+ ..+||||++++. ++.+++.|...|+++..+||+| + .
T Consensus 296 v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~-~ 367 (1176)
T PRK09401 296 VGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E-R 367 (1176)
T ss_pred ecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H-H
Confidence 1111223345544443332 45667777777665 469999999888 9999999999999999999999 2 2
Q ss_pred HHHHHHHcCCCeEEEE----eCccccccccCC-ccEEEEeCCCC------CHHHHHHHHhhcC
Q 010884 299 SVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 350 (498)
Q Consensus 299 ~~~~~f~~g~~~vlva----T~a~~~GiD~p~-v~~VI~~~~p~------s~~~y~Q~~GRag 350 (498)
.+++|++|+++|||| |++++||||+|+ |++||||++|+ ..+.|.+++||+-
T Consensus 368 -~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 368 -KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred -HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 359999999999999 689999999999 89999999998 6788999999995
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.1e-36 Score=305.81 Aligned_cols=302 Identities=17% Similarity=0.107 Sum_probs=192.8
Q ss_pred CEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc-CCceeEecCCCCHHH---------HHH
Q 010884 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQV---------KTK 119 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~-gi~~~~~~~~~~~~~---------~~~ 119 (498)
++++.||||+|||++|++|++. ..+++++++|+++|+.|+.++++.+ |.....+++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999873 4578999999999999999999985 655544444322110 001
Q ss_pred HHHHHhcC---CCcccEEEECcccccChhhH---HHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCC
Q 010884 120 IYEDLDSG---KPSLRLLYVTPELTATPGFM---SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (498)
Q Consensus 120 ~~~~~~~~---~~~~~~l~~tpe~v~t~~~~---~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 193 (498)
........ -....++++||+.+....+. ......... ..++|||||||.+.+++..+ +..+..... ..+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~-~~~~iViDE~h~~~~~~~~~---l~~~l~~l~-~~~ 155 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASI-ANSLLIFDEVHFYDEYTLAL---ILAVLEVLK-DND 155 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHh-cCCEEEEeCCCCCCHHHHHH---HHHHHHHHH-HcC
Confidence 11111110 01245666666654322111 011111111 14789999999998865322 233222222 247
Q ss_pred CCEEEEeecCChHHHHHHHHHhCCC-CCeEEecCCCCCceEEEEEe-ecchhhHHHHHHHHHHh-cCCccEEEEeCccch
Q 010884 194 VPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRY-KDLLDDAYADLCSVLKA-NGDTCAIVYCLERTT 270 (498)
Q Consensus 194 ~~~l~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~~~r~ni~~~v~~-~~~~~~~~~~l~~~l~~-~~~~~~IVf~~t~~~ 270 (498)
.|++++|||++....+ +....... .+..+.....+....+.+.. ......+...+..+++. ..++++||||+|++.
T Consensus 156 ~~~i~~SATlp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKE-YAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHH-HHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 8999999999865533 33222221 11111100000000111111 11111223344444433 245789999999999
Q ss_pred HHHHHHHHHhCCC--ceEeecCCCCHHHHHH----HHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHH
Q 010884 271 CDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (498)
Q Consensus 271 ~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~----~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q 344 (498)
|+.+++.|.+.+. .+..+||++++.+|.. +++.|++|+.+|||||+++++|||++ +++||++..| ++.|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999998776 4899999999999976 48899999999999999999999995 8999998766 889999
Q ss_pred HHhhcCCCCCCc----eEEEEEccc
Q 010884 345 ESGRAGRDQLPS----KSLLYYGMD 365 (498)
Q Consensus 345 ~~GRagR~g~~~----~~~~~~~~~ 365 (498)
|+||+||.|+.. ..++|+...
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecC
Confidence 999999998643 456665543
No 58
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-35 Score=288.26 Aligned_cols=317 Identities=22% Similarity=0.280 Sum_probs=236.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHH-cCCc---ee
Q 010884 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIA---GE 106 (498)
Q Consensus 35 g~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~-~gi~---~~ 106 (498)
+.-++|.+|..+....+.+ ++++++|||-|||+++.+.+.. .++++|+++||+-|+.|+...+.+ .|++ ..
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 4457899999999888776 8999999999999988776542 255899999999999999999988 6774 45
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 010884 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (498)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (498)
.+++......+...|.. .+++++||.++.+... ....+...+.++|+||||+-.. + + +|..+..
T Consensus 91 ~ltGev~p~~R~~~w~~-------~kVfvaTPQvveNDl~----~Grid~~dv~~lifDEAHRAvG-n--y--AYv~Va~ 154 (542)
T COG1111 91 ALTGEVRPEEREELWAK-------KKVFVATPQVVENDLK----AGRIDLDDVSLLIFDEAHRAVG-N--Y--AYVFVAK 154 (542)
T ss_pred eecCCCChHHHHHHHhh-------CCEEEeccHHHHhHHh----cCccChHHceEEEechhhhccC-c--c--hHHHHHH
Confidence 78888888888888764 7899999998876432 3344455689999999999653 1 1 3555544
Q ss_pred -HHHhCCCCCEEEEeecCCh--HHHHHHHHHhCCCCCeEEecCC-C-CCce---EEEEEeecc-----------------
Q 010884 187 -LRNYLPDVPILALTATAAP--KVQKDVMESLCLQNPLVLKSSF-N-RPNL---FYEVRYKDL----------------- 241 (498)
Q Consensus 187 -l~~~~~~~~~l~lSAT~~~--~~~~~i~~~l~~~~~~~~~~~~-~-r~ni---~~~v~~~~~----------------- 241 (498)
....-.+..+++|||||.. +-...+++.|++.+..+-.... + +|.+ .......+.
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 3333346679999999964 4456777888775433321100 0 0000 000000000
Q ss_pred ------------------------------------hh------------------------------------------
Q 010884 242 ------------------------------------LD------------------------------------------ 243 (498)
Q Consensus 242 ------------------------------------~~------------------------------------------ 243 (498)
..
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 00
Q ss_pred ---------------------------------hHHHHHHHHH----HhcCCccEEEEeCccchHHHHHHHHHhCCCceE
Q 010884 244 ---------------------------------DAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (498)
Q Consensus 244 ---------------------------------~~~~~l~~~l----~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~ 286 (498)
.|+..+.+++ +..++.++|||++.|.+++.+.++|.+.|..+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 1222233333 334567899999999999999999999988774
Q ss_pred -e--------ecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCce
Q 010884 287 -A--------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (498)
Q Consensus 287 -~--------~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~ 357 (498)
. ...||+++++.+++++|++|+++|||||++.+.|+|+|++++||.|++-.|...++||.||+||. ++|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 2 34589999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred EEEEEccchHHH
Q 010884 358 SLLYYGMDDRRR 369 (498)
Q Consensus 358 ~~~~~~~~d~~~ 369 (498)
.++++.......
T Consensus 474 v~vLvt~gtrde 485 (542)
T COG1111 474 VVVLVTEGTRDE 485 (542)
T ss_pred EEEEEecCchHH
Confidence 999999884433
No 59
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.8e-35 Score=295.32 Aligned_cols=297 Identities=18% Similarity=0.188 Sum_probs=200.2
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc--------CCceeEecCC
Q 010884 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK--------GIAGEFLSST 111 (498)
Q Consensus 42 ~Q~~~i~~i~~g~d--vlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~--------gi~~~~~~~~ 111 (498)
+|.++++++.++.+ +++.+|||+|||++|++|++.....+++++|+++|++||.+.++++ +..+..+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999999874 7889999999999999999988888999999999999999998874 2233333333
Q ss_pred CCHHHHHHHHH---HHhcC------------CCcccEEEECcccccChhhHHHHH--h----hhhcCCccEEEEeccccc
Q 010884 112 QTMQVKTKIYE---DLDSG------------KPSLRLLYVTPELTATPGFMSKLK--K----IHSRGLLNLVAIDEAHCI 170 (498)
Q Consensus 112 ~~~~~~~~~~~---~~~~~------------~~~~~~l~~tpe~v~t~~~~~~l~--~----~~~~~~l~~iViDEaH~i 170 (498)
.......... ....+ .....+++++|+++..- +.... . ......+++|||||+|.+
T Consensus 81 -~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~l--lr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 81 -TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYL--TRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred -chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHH--HhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 1111111110 00000 11234555555554310 00000 0 001346899999999999
Q ss_pred cccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCC------------C------C--
Q 010884 171 SSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N------R-- 229 (498)
Q Consensus 171 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------------~------r-- 229 (498)
+.|+.++...+.....+.... ...+++++|||+++.+...+...+.+..+.....+. . |
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPV 237 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccccee
Confidence 988876666554444433322 257999999999998877776653334443332222 0 1
Q ss_pred -CceEEEEEeecc-hhhHHHHHHH----HHHhcCCccEEEEeCccchHHHHHHHHHhCC--CceEeecCCCCHHHHHHHH
Q 010884 230 -PNLFYEVRYKDL-LDDAYADLCS----VLKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVL 301 (498)
Q Consensus 230 -~ni~~~v~~~~~-~~~~~~~l~~----~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~ 301 (498)
|++...+..... ....+..+.+ .++..+++++||||+|++.++.++..|++.| +.+..+||.+++.+|..+
T Consensus 238 ~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~- 316 (357)
T TIGR03158 238 LPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA- 316 (357)
T ss_pred ccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh-
Confidence 345444443211 1122222223 3333456789999999999999999999865 578899999999998754
Q ss_pred HHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcC
Q 010884 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (498)
Q Consensus 302 ~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRag 350 (498)
++..|||||+++++|||++++ +|| ++ |.+.+.|+||+||+|
T Consensus 317 -----~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 -----MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -----ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 478899999999999999987 666 45 899999999999997
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=298.04 Aligned_cols=333 Identities=23% Similarity=0.308 Sum_probs=247.0
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHhH---hc-CCCeEEEeCcHHHH
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPA---LA-KPGIVLVVSPLIAL 90 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l~~---l~-~~~~~lvl~P~~~L 90 (498)
....+++.+++...|+. -|+..+.|.|.-++++ +++|.|.+|+.+|+||||++..+.- +. .+++.|+++|+.+|
T Consensus 195 ~vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 195 PVDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred cccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 34457888899999987 6999999999999987 7799999999999999999887643 33 38899999999999
Q ss_pred HHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEec
Q 010884 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (498)
Q Consensus 91 ~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDE 166 (498)
++|..+.++. +|+.+..-.+..--..+... -.....++.+|+++|.|-+-- .+..-...+.++.+||||
T Consensus 274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEGiD~-----lLRtg~~lgdiGtVVIDE 346 (830)
T COG1202 274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEGIDY-----LLRTGKDLGDIGTVVIDE 346 (830)
T ss_pred hcchHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechhHHH-----HHHcCCcccccceEEeee
Confidence 9999999876 56655433322111111100 112334568888888885521 122225567799999999
Q ss_pred cccccc--cCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhh
Q 010884 167 AHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD 244 (498)
Q Consensus 167 aH~i~~--~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~ 244 (498)
+|.+.+ .|+..- --+++++..+|+.|+|.||||..+.. .+.+.|+..... ..-....+...+.......+
T Consensus 347 iHtL~deERG~RLd---GLI~RLr~l~~~AQ~i~LSATVgNp~--elA~~l~a~lV~---y~~RPVplErHlvf~~~e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLD---GLIGRLRYLFPGAQFIYLSATVGNPE--ELAKKLGAKLVL---YDERPVPLERHLVFARNESE 418 (830)
T ss_pred eeeccchhcccchh---hHHHHHHHhCCCCeEEEEEeecCChH--HHHHHhCCeeEe---ecCCCCChhHeeeeecCchH
Confidence 999975 565322 34778888999999999999986652 456666654221 11112234444454544456
Q ss_pred HHHHHHHHHHh--------cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 245 AYADLCSVLKA--------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 245 ~~~~l~~~l~~--------~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
|...+..+.+. .-.+++|||++||+.|+.||..|...|+++.+||+||+..+|..+...|.++++.++|+|-
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 77777776643 1246799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEE---EeCCCC-CHHHHHHHHhhcCCCCC--CceEEEEEcc
Q 010884 317 AFGMGIDRKDVRLVC---HFNIPK-SMEAFYQESGRAGRDQL--PSKSLLYYGM 364 (498)
Q Consensus 317 a~~~GiD~p~v~~VI---~~~~p~-s~~~y~Q~~GRagR~g~--~~~~~~~~~~ 364 (498)
|++.|+|+|.-.+|+ -++.-| |+..|.|+.|||||.+- .|.+++++.+
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 999999999544332 133333 89999999999999875 5666766543
No 61
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-37 Score=291.47 Aligned_cols=341 Identities=19% Similarity=0.238 Sum_probs=266.8
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-------CCeEEEeCc
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSP 86 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-------~~~~lvl~P 86 (498)
.-.|..+.++....+++.+ =||..++|+|+..|+.+++++|+...+-||+|||.||++|++++ +-++++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 4567889999999999988 49999999999999999999999999999999999999999863 348999999
Q ss_pred HHHHHHHHHHHHHHcCCceeE----ecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEE
Q 010884 87 LIALMENQVIGLKEKGIAGEF----LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (498)
Q Consensus 87 ~~~L~~q~~~~l~~~gi~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~i 162 (498)
+++|+.|..+-.+.+|--... +.++.... +.+..+.. +.+++++||-.+..-+. .-...+..+.+|
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~e---eqf~~l~~---npDii~ATpgr~~h~~v----em~l~l~sveyV 168 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIE---EQFILLNE---NPDIIIATPGRLLHLGV----EMTLTLSSVEYV 168 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHH---HHHHHhcc---CCCEEEecCceeeeeeh----heeccccceeee
Confidence 999999999998887543222 22222221 12222221 24555555554332211 111234558899
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC---CCceEEEEEe
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRY 238 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~~v~~ 238 (498)
|+|||+.+.++| |. ..+.++...+| +.|.++||||++..... ...-++.+|..++.... .+.+......
T Consensus 169 VfdEadrlfemg--fq---eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~~ 241 (529)
T KOG0337|consen 169 VFDEADRLFEMG--FQ---EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFFR 241 (529)
T ss_pred eehhhhHHHhhh--hH---HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhheee
Confidence 999999999998 44 45566666666 78999999999988766 55568888877663221 1222222211
Q ss_pred ecchhhHHHHHHHHHHhcC-CccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc
Q 010884 239 KDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (498)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~-~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a 317 (498)
...+++...|+.++.... ..+++|||.|+..++.+...|+..|+.+..++|.|++..|..-...|..++..++|.|+.
T Consensus 242 -~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdv 320 (529)
T KOG0337|consen 242 -VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDV 320 (529)
T ss_pred -eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehh
Confidence 123567788888876643 457999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHH
Q 010884 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (498)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~ 373 (498)
+.+|+|+|-.+.||+||+|....-|+||+||+.|.|+.|.++.++.+.|...+-.+
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 99999999999999999999999999999999999999999999998887765544
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.2e-35 Score=307.93 Aligned_cols=300 Identities=18% Similarity=0.246 Sum_probs=205.4
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHH---------HHHhHhc---------CCCeEEEeCcHHHHHHHHHHHHHH-cC
Q 010884 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPALA---------KPGIVLVVSPLIALMENQVIGLKE-KG 102 (498)
Q Consensus 42 ~Q~~~i~~i~~g~dvlv~apTG~GKTl~---------~~l~~l~---------~~~~~lvl~P~~~L~~q~~~~l~~-~g 102 (498)
.|+++++.+++|++++++|+||+|||.+ |++|.+. ..+.++|++|+++|+.|....+.+ .|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999986 3333322 245899999999999998888765 22
Q ss_pred ------CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCC
Q 010884 103 ------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (498)
Q Consensus 103 ------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (498)
.++....++..... . ..... ...++++|+.+.. .....+++|||||||.++..+.
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~----~-~t~~k--~~~Ilv~T~~L~l-----------~~L~~v~~VVIDEaHEr~~~~D- 308 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDEL----I-NTNPK--PYGLVFSTHKLTL-----------NKLFDYGTVIIDEVHEHDQIGD- 308 (675)
T ss_pred ccccCCceEEEEECCcchHH----h-hcccC--CCCEEEEeCcccc-----------cccccCCEEEccccccCccchh-
Confidence 22334444433110 0 00111 2467777753211 1244589999999999988662
Q ss_pred ChHHHHHHHHHHHhCCC-CCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC-CCceEEEEEeec--------chhhHH
Q 010884 177 FRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKD--------LLDDAY 246 (498)
Q Consensus 177 fr~~~~~l~~l~~~~~~-~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~ni~~~v~~~~--------~~~~~~ 246 (498)
+ -+.-++...+. .++++||||++.++.. +...+ .++..+..+-. ...+........ ......
T Consensus 309 l-----lL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~--~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 309 I-----IIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFF--PNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred H-----HHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHh--cCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHH
Confidence 1 12222222222 4899999999877643 44433 34544433211 122222111110 001111
Q ss_pred HHHHHHHHh---cCCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHH-HcCCCeEEEEeCcccc
Q 010884 247 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAFGM 320 (498)
Q Consensus 247 ~~l~~~l~~---~~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f-~~g~~~vlvaT~a~~~ 320 (498)
..+...+.. ..++++||||+++++++.+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+|||||+.+++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 223333322 23467999999999999999999987 78999999999975 4667777 6899999999999999
Q ss_pred ccccCCccEEEEeC---CCC---------CHHHHHHHHhhcCCCCCCceEEEEEccchHHHHH
Q 010884 321 GIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (498)
Q Consensus 321 GiD~p~v~~VI~~~---~p~---------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~ 371 (498)
|||+|+|++||++| .|. |.++|.||+|||||. ++|.|+.+|+..+...+.
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ 520 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIK 520 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHH
Confidence 99999999999999 665 889999999999999 799999999988765433
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=9.7e-35 Score=304.17 Aligned_cols=298 Identities=16% Similarity=0.105 Sum_probs=205.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhH---hcCC-CeEEEeCcHHHHHHHHHHHHHHcCCc----eeEe
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKP-GIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~---l~~~-~~~lvl~P~~~L~~q~~~~l~~~gi~----~~~~ 108 (498)
-.||++|.++++.++.+++.++++|||+|||+++...+ +... +++||++|+++|+.|+.+.+++++.. ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999998765432 2333 48999999999999999999986531 1112
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (498)
.++... .....++++||+.+.... . .....+++|||||||.+... .+..+.
T Consensus 193 ~~g~~~-------------~~~~~I~VaT~qsl~~~~------~-~~~~~~~~iIvDEaH~~~~~---------~~~~il 243 (501)
T PHA02558 193 YSGTAK-------------DTDAPIVVSTWQSAVKQP------K-EWFDQFGMVIVDECHLFTGK---------SLTSII 243 (501)
T ss_pred ecCccc-------------CCCCCEEEeeHHHHhhch------h-hhccccCEEEEEchhcccch---------hHHHHH
Confidence 121110 123578888877654321 0 12345899999999998751 233444
Q ss_pred HhCC-CCCEEEEeecCChHHHHHH--HHHhCCCCCeEEecCC----C---CCceEEEEEe---e----------c-----
Q 010884 189 NYLP-DVPILALTATAAPKVQKDV--MESLCLQNPLVLKSSF----N---RPNLFYEVRY---K----------D----- 240 (498)
Q Consensus 189 ~~~~-~~~~l~lSAT~~~~~~~~i--~~~l~~~~~~~~~~~~----~---r~ni~~~v~~---~----------~----- 240 (498)
..++ ..++++||||+.......+ ...++ +.....+. . .....+.... . .
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEI 320 (501)
T ss_pred HhhhccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHH
Confidence 4454 4568999999965432111 11111 11111000 0 0000000000 0 0
Q ss_pred ----chhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEE
Q 010884 241 ----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (498)
Q Consensus 241 ----~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlva 314 (498)
....+...+..++.. ..+.+++|||.++++++.+++.|.+.|.++..+||+++.++|..+++.|++|+..||||
T Consensus 321 ~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 321 KYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 000111222222221 23467899999999999999999999999999999999999999999999999999999
Q ss_pred e-CccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccch
Q 010884 315 T-VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (498)
Q Consensus 315 T-~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d 366 (498)
| +.+++|+|+|++++||++.+++|...|+|++||++|.+..+..+++|+.-|
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 8 899999999999999999999999999999999999987666666665544
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.9e-33 Score=293.47 Aligned_cols=325 Identities=22% Similarity=0.199 Sum_probs=232.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (498)
..+.++.+|.. ++|.|..+++.++.|+ ++.|.||+|||++|.+|++. .+..++|++|++.|+.|..+.+..
T Consensus 93 rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 93 REASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 34556677886 6699999999999999 99999999999999999985 367899999999999998888776
Q ss_pred -cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh----------------------hhhcC
Q 010884 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----------------------IHSRG 157 (498)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~----------------------~~~~~ 157 (498)
+|+.+..+.++.....+...+ ..+|+|+|.--+.-.-+...+.. ..-..
T Consensus 170 ~lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 170 ALGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred hcCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 589999888887655443322 26899999874432111111110 01124
Q ss_pred CccEEEEeccccccc-----------cC--CCChHHHHHHHHHHHhC---------------------------------
Q 010884 158 LLNLVAIDEAHCISS-----------WG--HDFRPSYRKLSSLRNYL--------------------------------- 191 (498)
Q Consensus 158 ~l~~iViDEaH~i~~-----------~g--~~fr~~~~~l~~l~~~~--------------------------------- 191 (498)
.+.+.||||+|.++= .+ .+....|..+..+...+
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 478999999998631 00 00001111111100000
Q ss_pred -----------------------------------------------CC-------------------------------
Q 010884 192 -----------------------------------------------PD------------------------------- 193 (498)
Q Consensus 192 -----------------------------------------------~~------------------------------- 193 (498)
++
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 00
Q ss_pred -------CCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceE--EEEEeecchhhHHHHHHHHHHhc--CCccEE
Q 010884 194 -------VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF--YEVRYKDLLDDAYADLCSVLKAN--GDTCAI 262 (498)
Q Consensus 194 -------~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~--~~v~~~~~~~~~~~~l~~~l~~~--~~~~~I 262 (498)
..+.+||||+... ..++.+.+++. ++..+.++|+.. +.........+++..|.+.++.. .+.++|
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~---vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvL 477 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREV-AGELWSVYGLP---VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVL 477 (656)
T ss_pred HHHHHhhHHHhcccCcChHH-HHHHHHHHCCC---eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 0267888888754 45666666654 233445555542 12111122356778888887653 356899
Q ss_pred EEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC---Ccc-----EEEEeC
Q 010884 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFN 334 (498)
Q Consensus 263 Vf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p---~v~-----~VI~~~ 334 (498)
|||+|++.++.++..|.+.|+++..+||+++..+ ..+..++.+...|+|||+++|+|+|++ +|+ +||+++
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 9999999999999999999999999999876554 445555656667999999999999999 777 999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCceEEEEEccchHH
Q 010884 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (498)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~ 368 (498)
+|.|...|.||+||+||.|.+|.++.|++.+|.-
T Consensus 556 ~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 556 RHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 9999999999999999999999999999987743
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=311.82 Aligned_cols=334 Identities=23% Similarity=0.269 Sum_probs=244.0
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~ 97 (498)
.+.+...|.. .|+..|+++|.+|+..+.+|++++|..|||||||+||++|++. ...++|+|.||+||++||+++
T Consensus 56 ~~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHH
Confidence 3444666665 5888899999999999999999999999999999999999985 245789999999999999999
Q ss_pred HHHc----C--CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 98 LKEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 98 l~~~----g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
|+++ + +....+++......+..++. .. .+|+++||+|+-.......-........+++|||||+|..-
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~p--p~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIR----NP--PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHh----CC--CCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 9884 4 55666777777666653332 23 78999999987542211111111222338999999999874
Q ss_pred c-cCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeE-EecCCCCCceEEEEEeecc-------
Q 010884 172 S-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDL------- 241 (498)
Q Consensus 172 ~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~ni~~~v~~~~~------- 241 (498)
. .|.+..-..++|..+.+.++ +.++|+.|||...... ....+....... +..+-......+.+.....
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e--~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE--FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH--HHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhh
Confidence 3 45556666677777776665 6789999999866532 233333333332 3333322233333332220
Q ss_pred -hhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHH----HHHHhCC----CceEeecCCCCHHHHHHHHHHHHcCCCe
Q 010884 242 -LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (498)
Q Consensus 242 -~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~----~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (498)
...+...+..+... ..+-++|+|+.+++.++.++ ..+...+ ..+..|+|++...+|..+...|++|++.
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 01222222222222 23567999999999999998 4444455 5688999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 311 VVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 311 vlvaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
++++|+++.-|||+.+++.||.++.|. +..++.|+.|||||.++.+..++.+..+
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999 9999999999999999777777666533
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.8e-33 Score=303.32 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=211.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCc----eeEecCCCC
Q 010884 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSSTQT 113 (498)
Q Consensus 42 ~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~l~~-~gi~----~~~~~~~~~ 113 (498)
+-.+++.++..+++++++|+||+|||++|.++++.. .++++|+.|++.++.+...++.+ ++.. +.+.....
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~- 84 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE- 84 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc-
Confidence 344677778788999999999999999999888753 56899999999999999998854 4432 22211110
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc-ccccCCCChHHHHHHHHHHHh-C
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-L 191 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~-~ 191 (498)
. ......+|.|+||.++. ..+........+++|||||+|. ..+- ||--.+ +..+... .
T Consensus 85 ---------~--~~s~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~l--l~~i~~~lr 144 (819)
T TIGR01970 85 ---------N--KVSRRTRLEVVTEGILT-----RMIQDDPELDGVGALIFDEFHERSLDA--DLGLAL--ALDVQSSLR 144 (819)
T ss_pred ---------c--ccCCCCcEEEECCcHHH-----HHHhhCcccccCCEEEEeccchhhhcc--chHHHH--HHHHHHhcC
Confidence 0 11123677777775442 2333344567799999999995 4432 222111 2233332 3
Q ss_pred CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhh----HHHHHHHHHHhcCCccEEEEeCc
Q 010884 192 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD----AYADLCSVLKANGDTCAIVYCLE 267 (498)
Q Consensus 192 ~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~----~~~~l~~~l~~~~~~~~IVf~~t 267 (498)
++.++++||||++..... +.++ ..+.+...+...| +...+........ ....+..+++. ..+++|||+++
T Consensus 145 ~dlqlIlmSATl~~~~l~---~~l~-~~~vI~~~gr~~p-Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg 218 (819)
T TIGR01970 145 EDLKILAMSATLDGERLS---SLLP-DAPVVESEGRSFP-VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPG 218 (819)
T ss_pred CCceEEEEeCCCCHHHHH---HHcC-CCcEEEecCccee-eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECC
Confidence 588999999999977532 3222 2333322221111 2111111111111 11233444443 35679999999
Q ss_pred cchHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC-------
Q 010884 268 RTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------- 337 (498)
Q Consensus 268 ~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~------- 337 (498)
+++++.+++.|.+ .++.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 9999999999987 478899999999999999999999999999999999999999999999999999986
Q ss_pred -----------CHHHHHHHHhhcCCCCCCceEEEEEccchHHHH
Q 010884 338 -----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (498)
Q Consensus 338 -----------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~ 370 (498)
|..+|.||+|||||. .+|.|+.+|+..+...+
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 446799999999999 69999999998776543
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.6e-33 Score=305.88 Aligned_cols=299 Identities=19% Similarity=0.231 Sum_probs=209.3
Q ss_pred HHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCc----eeEecCCCCH
Q 010884 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSSTQTM 114 (498)
Q Consensus 43 Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~l~~-~gi~----~~~~~~~~~~ 114 (498)
-.+++.++.++++++++||||||||++|.++++.. .++++|+.|++.++.|..+++.+ ++.. +.+......
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~- 88 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES- 88 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc-
Confidence 34567778788999999999999999999888864 46899999999999999998854 4432 222221110
Q ss_pred HHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCC
Q 010884 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPD 193 (498)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~ 193 (498)
......+|+|+||..+ ...+........+++|||||+|..+-. .|+. +.-+..+... .++
T Consensus 89 -----------~~~~~t~I~v~T~G~L-----lr~l~~d~~L~~v~~IIlDEaHER~l~-~Dl~--L~ll~~i~~~lr~~ 149 (812)
T PRK11664 89 -----------KVGPNTRLEVVTEGIL-----TRMIQRDPELSGVGLVILDEFHERSLQ-ADLA--LALLLDVQQGLRDD 149 (812)
T ss_pred -----------ccCCCCcEEEEChhHH-----HHHHhhCCCcCcCcEEEEcCCCccccc-cchH--HHHHHHHHHhCCcc
Confidence 0112356776666543 222333445677999999999973211 1221 1112233333 357
Q ss_pred CCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHH-----HHHHHHHHhcCCccEEEEeCcc
Q 010884 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLER 268 (498)
Q Consensus 194 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~IVf~~t~ 268 (498)
.++++||||++..... ..+. ..+.+...+...| +...+..... .+++ ..+..++.. ..+.+|||++++
T Consensus 150 lqlilmSATl~~~~l~---~~~~-~~~~I~~~gr~~p-V~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~ 222 (812)
T PRK11664 150 LKLLIMSATLDNDRLQ---QLLP-DAPVIVSEGRSFP-VERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGV 222 (812)
T ss_pred ceEEEEecCCCHHHHH---HhcC-CCCEEEecCcccc-ceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCH
Confidence 8999999999876432 2221 2333322221111 2111111111 1222 133444443 357799999999
Q ss_pred chHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC--------
Q 010884 269 TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (498)
Q Consensus 269 ~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~-------- 337 (498)
++++.+++.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++++
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999987 578899999999999999999999999999999999999999999999999988875
Q ss_pred ----------CHHHHHHHHhhcCCCCCCceEEEEEccchHHH
Q 010884 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (498)
Q Consensus 338 ----------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~ 369 (498)
|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 446899999999999 5999999999876653
No 68
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.4e-32 Score=304.20 Aligned_cols=312 Identities=21% Similarity=0.265 Sum_probs=222.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHc-CC---ceeEe
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFL 108 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~-gi---~~~~~ 108 (498)
-++|++|.+++..++.+ ++++++|||+|||+++++++.. ..+++|||+|+++|+.|+...++++ ++ .+..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 46899999999988877 9999999999999998877653 3689999999999999999999884 44 55666
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHH-HHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSL 187 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l-~~l 187 (498)
++......+...+. ..+++++||+.+.... +........+++|||||||++.... .|..+ ..+
T Consensus 93 ~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~l----~~~~~~~~~~~liVvDEaH~~~~~~-----~~~~i~~~~ 156 (773)
T PRK13766 93 TGEVSPEKRAELWE-------KAKVIVATPQVIENDL----IAGRISLEDVSLLIFDEAHRAVGNY-----AYVYIAERY 156 (773)
T ss_pred eCCCCHHHHHHHHh-------CCCEEEECHHHHHHHH----HcCCCChhhCcEEEEECCccccccc-----cHHHHHHHH
Confidence 66666655444443 2578889888764322 1222334568999999999986421 12222 233
Q ss_pred HHhCCCCCEEEEeecCChH--HHHHHHHHhCCCCCeEEec-------CCCCCceEEEEE---------------------
Q 010884 188 RNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKS-------SFNRPNLFYEVR--------------------- 237 (498)
Q Consensus 188 ~~~~~~~~~l~lSAT~~~~--~~~~i~~~l~~~~~~~~~~-------~~~r~ni~~~v~--------------------- 237 (498)
+...+...+++||||+... ....+...|++....+... .+..+.+.+...
T Consensus 157 ~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 157 HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRL 236 (773)
T ss_pred HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 4444556699999998432 2233344443221110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010884 238 -------------------------------------------------------------------------------- 237 (498)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (498)
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ------------------------eecchhhHHHHHHHHHHh----cCCccEEEEeCccchHHHHHHHHHhCCCceEeec
Q 010884 238 ------------------------YKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (498)
Q Consensus 238 ------------------------~~~~~~~~~~~l~~~l~~----~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h 289 (498)
.......|+..|.++++. .++.++||||+++..|+.|++.|...|+.+..+|
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 000001233344444433 4678899999999999999999999999999998
Q ss_pred CC--------CCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 290 AG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 290 ~~--------l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
|. +++.+|..++++|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.| +|.++++
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l 475 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVL 475 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEE
Confidence 86 99999999999999999999999999999999999999999999999999999999999987 4777777
Q ss_pred Eccch
Q 010884 362 YGMDD 366 (498)
Q Consensus 362 ~~~~d 366 (498)
+....
T Consensus 476 ~~~~t 480 (773)
T PRK13766 476 IAKGT 480 (773)
T ss_pred EeCCC
Confidence 76543
No 69
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-32 Score=293.73 Aligned_cols=326 Identities=20% Similarity=0.191 Sum_probs=236.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 010884 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (498)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (498)
+..+.++.+|+ .+++.|..++..++.|+ ++.|.||+|||++|.+|++. .+..++|++|+..|+.|....+..
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 34556667788 47899998888888776 99999999999999999973 578899999999999999888776
Q ss_pred --cCCceeEecCCCC-HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc--
Q 010884 101 --KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS-- 172 (498)
Q Consensus 101 --~gi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~-- 172 (498)
+|+.+..+.++.. ...+...+ ..+|+|+||-.++-.-+...+. .......+.++||||||.++=
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 6899998888877 55444322 2689999987664322222221 112345589999999998731
Q ss_pred ---------cCCCChHHHHHHHHHHHhCC---------------------------------------------------
Q 010884 173 ---------WGHDFRPSYRKLSSLRNYLP--------------------------------------------------- 192 (498)
Q Consensus 173 ---------~g~~fr~~~~~l~~l~~~~~--------------------------------------------------- 192 (498)
.+..--..|..+..+...+.
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 00000011111111111000
Q ss_pred -----------------------------C--------------------------------------CCEEEEeecCCh
Q 010884 193 -----------------------------D--------------------------------------VPILALTATAAP 205 (498)
Q Consensus 193 -----------------------------~--------------------------------------~~~l~lSAT~~~ 205 (498)
+ ..+.+||+|+..
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 0 015667777643
Q ss_pred HHHHHHHHHhCCCCCeEEecCCCCCceEEEEE--eecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhC
Q 010884 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (498)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~ 281 (498)
.. ..+.+..++ .++..+.++|.+..... .......++..|...+.. ..+.++||||+|++.++.++..|.+.
T Consensus 376 ~~-~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 376 EE-KEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HH-HHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 32 344444433 34445666666554321 111235677888777755 35788999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccccccc---CCcc-----EEEEeCCCCCHHHHHHHHhhcCCCC
Q 010884 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQ 353 (498)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~---p~v~-----~VI~~~~p~s~~~y~Q~~GRagR~g 353 (498)
|+++..+||++.++++..+..++..| .|+|||+++|+|+|+ |+|. +||++++|.|...|.||+||+||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999999988888887766 699999999999999 6999 9999999999999999999999999
Q ss_pred CCceEEEEEccchHH
Q 010884 354 LPSKSLLYYGMDDRR 368 (498)
Q Consensus 354 ~~~~~~~~~~~~d~~ 368 (498)
.+|.++.|++.+|.-
T Consensus 530 ~~G~s~~~is~eD~l 544 (790)
T PRK09200 530 DPGSSQFFISLEDDL 544 (790)
T ss_pred CCeeEEEEEcchHHH
Confidence 999999999987643
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.7e-32 Score=288.00 Aligned_cols=322 Identities=18% Similarity=0.188 Sum_probs=228.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (498)
.+.++.+|. +|+|.+++..+..++..++.|+||+|||++|.+|++. .+..++|++|+++|+.|+.+.+..
T Consensus 61 Ea~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 61 EADKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred HHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 344455564 6667777777666666899999999999999999864 456799999999999999998844
Q ss_pred cCCceeEecCCC-----CHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh---hhhcCCccEEEEeccccccc
Q 010884 101 KGIAGEFLSSTQ-----TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 101 ~gi~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~~ 172 (498)
+|+.+.....+. ....+... . ..+|+|+||..+...-+...+.. ......+.++||||||.++-
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~-----y---~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKI-----Y---NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHh-----C---CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 688877655431 11122111 1 27899999998865544443321 12245688999999999831
Q ss_pred c---------CC--CChHHHHHHHHHHHhCC-------------------------------------------------
Q 010884 173 W---------GH--DFRPSYRKLSSLRNYLP------------------------------------------------- 192 (498)
Q Consensus 173 ~---------g~--~fr~~~~~l~~l~~~~~------------------------------------------------- 192 (498)
- |. .--..|..+..+...+.
T Consensus 210 Deartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al 289 (762)
T TIGR03714 210 DSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLAL 289 (762)
T ss_pred ccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHH
Confidence 0 00 00011111111111100
Q ss_pred -------------------------------C--------------------------------------CCEEEEeecC
Q 010884 193 -------------------------------D--------------------------------------VPILALTATA 203 (498)
Q Consensus 193 -------------------------------~--------------------------------------~~~l~lSAT~ 203 (498)
+ .++.+||+|+
T Consensus 290 ~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa 369 (762)
T TIGR03714 290 RAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTG 369 (762)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCC
Confidence 0 1266777776
Q ss_pred ChHHHHHHHHHhCCCCCeEEecCCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHH
Q 010884 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYL 278 (498)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L 278 (498)
... ..++.+..++ .++..+.++|.+.... .+.. ...|+..+.+.++. ..+.++||||+|++.++.++..|
T Consensus 370 ~~~-~~Ef~~iY~l---~v~~IPt~kp~~r~d~~d~i~~~-~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L 444 (762)
T TIGR03714 370 KVA-EKEFIETYSL---SVVKIPTNKPIIRIDYPDKIYAT-LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELL 444 (762)
T ss_pred hhH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEEC-HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHH
Confidence 443 2344443332 3455566677665442 2222 24677888877755 45788999999999999999999
Q ss_pred HhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC---------CccEEEEeCCCCCHHHHHHHHhhc
Q 010884 279 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGRA 349 (498)
Q Consensus 279 ~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p---------~v~~VI~~~~p~s~~~y~Q~~GRa 349 (498)
.+.|+++..+||++.++++..+.++++.| .|+|||+++|+|+|++ ++.+|+++++|..... .||+||+
T Consensus 445 ~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRt 521 (762)
T TIGR03714 445 LREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRS 521 (762)
T ss_pred HHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcc
Confidence 99999999999999999988887777666 6999999999999999 9999999999988777 9999999
Q ss_pred CCCCCCceEEEEEccchHH
Q 010884 350 GRDQLPSKSLLYYGMDDRR 368 (498)
Q Consensus 350 gR~g~~~~~~~~~~~~d~~ 368 (498)
||.|.+|.++.|++.+|.-
T Consensus 522 GRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 522 GRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred cCCCCceeEEEEEccchhh
Confidence 9999999999999987653
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-32 Score=289.91 Aligned_cols=304 Identities=17% Similarity=0.162 Sum_probs=206.9
Q ss_pred CCCHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcC-Cc---eeEecC
Q 010884 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IA---GEFLSS 110 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~-g--~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~g-i~---~~~~~~ 110 (498)
.+||+|++++.++.. | +..++++|||+|||++.+..+....+.+|||+|+..|+.||.+++.++. +. +..+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 589999999999874 3 3789999999999998876666567889999999999999999999862 22 222222
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhH----HHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 010884 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~----~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (498)
.... . ......++++|+.++...... ...........+++||+||||.+.. +.|..
T Consensus 335 ~~k~----~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr~--- 394 (732)
T TIGR00603 335 DAKE----R-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFRR--- 394 (732)
T ss_pred Cccc----c-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHHH---
Confidence 1100 0 011256888888877542111 1111222234589999999999854 22232
Q ss_pred HHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec--------CCCCCceEEEEEee-------------------
Q 010884 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--------SFNRPNLFYEVRYK------------------- 239 (498)
Q Consensus 187 l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------~~~r~ni~~~v~~~------------------- 239 (498)
+...+.....++||||+...... +.....+-.|.++.. ++-.+.-.+.+...
T Consensus 395 il~~l~a~~RLGLTATP~ReD~~-~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRML 473 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCCc-hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhH
Confidence 33334455689999999754321 111111223333322 11111111111111
Q ss_pred --cchhhHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcC-CCeEEEE
Q 010884 240 --DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVA 314 (498)
Q Consensus 240 --~~~~~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vlva 314 (498)
.....|+..+..+++.+ .+.++||||.+...++.++..|. +..+||+++..+|..++++|++| .+++||+
T Consensus 474 l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 474 LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 01123444555555543 57789999999999999999872 46689999999999999999965 8899999
Q ss_pred eCccccccccCCccEEEEeCCC-CCHHHHHHHHhhcCCCCCCceE-------EEEEccchH
Q 010884 315 TVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDR 367 (498)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~g~~~~~-------~~~~~~~d~ 367 (498)
|.++++|||+|++++||+++.| .|...|+||+||++|.+..+.+ +.+++....
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999999987 5999999999999999876554 556665443
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9.1e-33 Score=296.51 Aligned_cols=322 Identities=20% Similarity=0.241 Sum_probs=229.4
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHhHhc---C-CCeEEEeCcHHHHHHHH
Q 010884 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA---K-PGIVLVVSPLIALMENQ 94 (498)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~-g~dvlv~apTG~GKTl~~~l~~l~---~-~~~~lvl~P~~~L~~q~ 94 (498)
+.+.+.+...++. .|+.++.|.|++++.+... ++++++++|||+|||+++++.++. + ++++|+|+|+++|+++.
T Consensus 14 ~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek 92 (766)
T COG1204 14 VKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHH
Confidence 3456667777765 7898999999999987664 589999999999999999887764 2 47999999999999999
Q ss_pred HHHHH---HcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 95 VIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 95 ~~~l~---~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
+++++ .+|+++...++........ + ..++|+++|||.+..-.+.. ......+++|||||+|.+.
T Consensus 93 ~~~~~~~~~~GirV~~~TgD~~~~~~~-----l----~~~~ViVtT~EK~Dsl~R~~----~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 93 YEEFSRLEELGIRVGISTGDYDLDDER-----L----ARYDVIVTTPEKLDSLTRKR----PSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred HHHhhhHHhcCCEEEEecCCcccchhh-----h----ccCCEEEEchHHhhHhhhcC----cchhhcccEEEEeeeeecC
Confidence 99998 6899999988876543211 1 23789999999775311100 0023458999999999997
Q ss_pred cc--CCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCe-EE-ecCCCCCceE-EEEEeec------
Q 010884 172 SW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VL-KSSFNRPNLF-YEVRYKD------ 240 (498)
Q Consensus 172 ~~--g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~-~~-~~~~~r~ni~-~~v~~~~------ 240 (498)
+. |.-.. .-+.+.+...+.+++++||||.++.. ++..+++-.... .+ ..+..++... ..+....
T Consensus 160 d~~RG~~lE---~iv~r~~~~~~~~rivgLSATlpN~~--evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~ 234 (766)
T COG1204 160 DRTRGPVLE---SIVARMRRLNELIRIVGLSATLPNAE--EVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTW 234 (766)
T ss_pred CcccCceeh---hHHHHHHhhCcceEEEEEeeecCCHH--HHHHHhCCcccccCCCCcccccCCccceEEEEecCccccc
Confidence 63 43211 12444555556789999999998763 567777655331 11 1112222111 1111111
Q ss_pred ---chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC---------------------C--------------
Q 010884 241 ---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------G-------------- 282 (498)
Q Consensus 241 ---~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~---------------------g-------------- 282 (498)
.....+..+.+.++ .++++||||+|++.+...|+.|... +
T Consensus 235 ~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~ 312 (766)
T COG1204 235 PLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAEL 312 (766)
T ss_pred cccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHH
Confidence 11122333333333 3678999999999999999999830 0
Q ss_pred --CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEE----EeC-----CCCCHHHHHHHHhhcCC
Q 010884 283 --ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRAGR 351 (498)
Q Consensus 283 --~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI----~~~-----~p~s~~~y~Q~~GRagR 351 (498)
..++++|+||+.++|..+.+.|+.|.++|||||++++.|+|+|.-++|| -|+ .+-+.-++.|+.|||||
T Consensus 313 v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 313 VLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred HHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 1357899999999999999999999999999999999999999655555 355 45588999999999999
Q ss_pred CCC--CceEEEEE
Q 010884 352 DQL--PSKSLLYY 362 (498)
Q Consensus 352 ~g~--~~~~~~~~ 362 (498)
.|- .|.++++.
T Consensus 393 Pg~d~~G~~~i~~ 405 (766)
T COG1204 393 PGYDDYGEAIILA 405 (766)
T ss_pred CCcCCCCcEEEEe
Confidence 885 45566655
No 73
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8.1e-32 Score=301.91 Aligned_cols=293 Identities=19% Similarity=0.261 Sum_probs=203.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHHHH
Q 010884 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l----~~~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
.++.+.+.+..|+ .|+|+|+.+++.++.|+|++++||||+|||+ |.+|+. ..+.+++||+||++|+.|+.+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3345555555565 6999999999999999999999999999997 555543 246789999999999999999988
Q ss_pred Hc----CCcee---EecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 100 EK----GIAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 100 ~~----gi~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
.+ |+... .++++.+...+......+..+. ++|+++||..+ ......... .++++||||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV~Tp~rL------~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILITTTMFL------SKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH------HHHHHHhcC-CCCEEEEeChHhhhh
Confidence 75 33332 3567777666655566665544 67777777544 222211111 699999999999998
Q ss_pred cC---------CCChHH-HHHH-------------------HHHHHhCC-CCC--EEEEeecCCh-HHHHHHHHHhCCCC
Q 010884 173 WG---------HDFRPS-YRKL-------------------SSLRNYLP-DVP--ILALTATAAP-KVQKDVMESLCLQN 219 (498)
Q Consensus 173 ~g---------~~fr~~-~~~l-------------------~~l~~~~~-~~~--~l~lSAT~~~-~~~~~i~~~l~~~~ 219 (498)
++ -.|.+. ...+ ..+.+..| ..+ ++++|||..+ .+...+...+ ..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l--l~ 291 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL--LG 291 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc--cc
Confidence 65 236653 2221 11222333 333 5678999544 3332222111 01
Q ss_pred CeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCcc---chHHHHHHHHHhCCCceEeecCCCCHHH
Q 010884 220 PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLNDKA 296 (498)
Q Consensus 220 ~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~---~~~~~l~~~L~~~g~~~~~~h~~l~~~~ 296 (498)
..+-.......|+...+.... .+...|.++++..+ ..+||||+|+ +.|+++++.|.+.|+++..+||+++.
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred eEecCccccccceEEEEEecc---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 111111223344443333222 12345667776654 5699999999 99999999999999999999999973
Q ss_pred HHHHHHHHHcCCCeEEEEe----CccccccccCC-ccEEEEeCCCC
Q 010884 297 RSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (498)
Q Consensus 297 R~~~~~~f~~g~~~vlvaT----~a~~~GiD~p~-v~~VI~~~~p~ 337 (498)
.++++|++|+++||||| ++++||||+|+ |++|||||+|+
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 67999999999999995 89999999999 89999999997
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.6e-31 Score=285.86 Aligned_cols=311 Identities=19% Similarity=0.212 Sum_probs=230.9
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecC
Q 010884 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g---~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (498)
.+++.|+++++.+..+ +++++.||||+|||.+|+.++ +..++.+||++|+++|+.|+.+.+++ +|..+..+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999997654 45678999999999999999999987 6888899999
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH--HHHHHHH
Q 010884 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~ 188 (498)
+.+...+...+..+..+. .+++++|+..+.. ...++++|||||+|..+.+..+ .|.| +.+..++
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~~-----------p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALFL-----------PFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhcc-----------cccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 988888888888777765 7888888764422 2355899999999998876643 4444 5666777
Q ss_pred HhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCC---CCCceEEEEEee--------cchhhHHHHHHHHHHhcC
Q 010884 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYK--------DLLDDAYADLCSVLKANG 257 (498)
Q Consensus 189 ~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ni~~~v~~~--------~~~~~~~~~l~~~l~~~~ 257 (498)
....+.|++++|||++.+....+.. +......+...+ ..|.+...-... ......+..+.+.++ .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--R 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--c
Confidence 7788999999999999887654432 110111111111 122222211100 011222333333333 2
Q ss_pred CccEEEEeCcc------------------------------------------------------------chHHHHHHH
Q 010884 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (498)
Q Consensus 258 ~~~~IVf~~t~------------------------------------------------------------~~~~~l~~~ 277 (498)
++++|||+|++ ..++++++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 45688887642 256788888
Q ss_pred HHhC--CCceEeecCCCC--HHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHH
Q 010884 278 LSAG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEA 341 (498)
Q Consensus 278 L~~~--g~~~~~~h~~l~--~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~ 341 (498)
|.+. +.++..+|+++. .++++.+++.|.+|+.+|||+|++++.|+|+|+|.+|+.++... ....
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 9886 788999999986 46789999999999999999999999999999999997665442 3467
Q ss_pred HHHHHhhcCCCCCCceEEEEEccch
Q 010884 342 FYQESGRAGRDQLPSKSLLYYGMDD 366 (498)
Q Consensus 342 y~Q~~GRagR~g~~~~~~~~~~~~d 366 (498)
|.|++||+||.+..|.+++.....+
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCC
Confidence 9999999999999999997655444
No 75
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9.4e-31 Score=285.38 Aligned_cols=315 Identities=18% Similarity=0.188 Sum_probs=218.8
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhH---hc--CCCeEEEeCcHHHHHHHHHHHHH-HcCCceeEec
Q 010884 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPA---LA--KPGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~---l~--~~~~~lvl~P~~~L~~q~~~~l~-~~gi~~~~~~ 109 (498)
.+.|+|.++...++.. ..+++...+|.|||+-+.+.+ +. ..+++|||+|. +|..||..++. ++++....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 4889999999887654 378888999999997654433 12 24689999998 89999999985 5777766665
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccC-hhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (498)
........ ..-...-...+++++|.+.+.. +.....+.. ..++++||||||++..-...--..|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~----~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQALA----AEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHhh----cCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 44322110 0000111235788888887765 333333332 34899999999998621111123477776666
Q ss_pred HhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE---------------------------------------------
Q 010884 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL--------------------------------------------- 223 (498)
Q Consensus 189 ~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~--------------------------------------------- 223 (498)
...+ .+++|||||......+++..+.+-+|..+
T Consensus 303 ~~~~--~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVIP--GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hccC--CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 5443 47999999865333333333333222211
Q ss_pred -------------------------------------ec------CCC-CCceEEEEEe---------------------
Q 010884 224 -------------------------------------KS------SFN-RPNLFYEVRY--------------------- 238 (498)
Q Consensus 224 -------------------------------------~~------~~~-r~ni~~~v~~--------------------- 238 (498)
+. ++. |....+.+..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00 000 0000000000
Q ss_pred -------------ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHH
Q 010884 239 -------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (498)
Q Consensus 239 -------------~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f 304 (498)
....+.|+..|.++++...+.++||||+++..+..+++.|+ ..|+.+..+||+|+..+|..+++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 00011345567777777777899999999999999999994 6799999999999999999999999
Q ss_pred HcC--CCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 305 ~~g--~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||+||.|+.+.+.+++.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 974 59999999999999999999999999999999999999999999999988766654
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=277.85 Aligned_cols=316 Identities=24% Similarity=0.353 Sum_probs=211.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcCCce--eE
Q 010884 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAG--EF 107 (498)
Q Consensus 35 g~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~--~~ 107 (498)
+.-.+|++|.+++...+ |++++|++|||+|||+++...++. ..+++|+++|++-|+.||...+..+|++. ..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 34579999999999988 999999999999999988777763 36899999999999999998888888662 22
Q ss_pred ecCC-CCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH-
Q 010884 108 LSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS- 185 (498)
Q Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~- 185 (498)
..++ .....+..++. ..+++++||.++.+...-..... ++.+.++||||||+-.. .+. |..+-
T Consensus 138 ~l~~~~~~~~r~~i~~-------s~~vff~TpQil~ndL~~~~~~~---ls~fs~iv~DE~Hra~k-n~~----Y~~Vmr 202 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVA-------SKRVFFRTPQILENDLKSGLHDE---LSDFSLIVFDECHRTSK-NHP----YNNIMR 202 (746)
T ss_pred eccCccCCCchhhhhc-------ccceEEeChHhhhhhcccccccc---cceEEEEEEcccccccc-ccc----HHHHHH
Confidence 2222 22222222221 36899999988765421111111 45689999999999764 222 44433
Q ss_pred HHHHh-CCCCCEEEEeecCChHHHH--HHHHHhCCC----CCeEEec---------------------------------
Q 010884 186 SLRNY-LPDVPILALTATAAPKVQK--DVMESLCLQ----NPLVLKS--------------------------------- 225 (498)
Q Consensus 186 ~l~~~-~~~~~~l~lSAT~~~~~~~--~i~~~l~~~----~~~~~~~--------------------------------- 225 (498)
.+... ....++|+||||+...... .++..|... .-..+..
T Consensus 203 ~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~ 282 (746)
T KOG0354|consen 203 EYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPL 282 (746)
T ss_pred HHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHH
Confidence 22222 2244999999999753221 112222111 0000000
Q ss_pred -----------------CCCC----------Cce----E---E---------------EEEe----------------e-
Q 010884 226 -----------------SFNR----------PNL----F---Y---------------EVRY----------------K- 239 (498)
Q Consensus 226 -----------------~~~r----------~ni----~---~---------------~v~~----------------~- 239 (498)
.+.. ++. . + .++. +
T Consensus 283 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k 362 (746)
T KOG0354|consen 283 LQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK 362 (746)
T ss_pred HHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH
Confidence 0000 000 0 0 0000 0
Q ss_pred ----------------------------cchhhHHHHHHHHH----HhcCCccEEEEeCccchHHHHHHHHHh---CCCc
Q 010884 240 ----------------------------DLLDDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSA---GGIS 284 (498)
Q Consensus 240 ----------------------------~~~~~~~~~l~~~l----~~~~~~~~IVf~~t~~~~~~l~~~L~~---~g~~ 284 (498)
.....+++.+.+++ ...+..++|||+.+|+.|..|..+|.+ .|++
T Consensus 363 ~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir 442 (746)
T KOG0354|consen 363 YLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIK 442 (746)
T ss_pred HHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccc
Confidence 00002233333333 223556799999999999999999983 2333
Q ss_pred eE--------eecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 010884 285 CA--------AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (498)
Q Consensus 285 ~~--------~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~ 356 (498)
.. ....+|+++++.+++++|++|+++|||||+++++|+|++.++.||-||...|+...+||.|| ||. +.|
T Consensus 443 ~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns 520 (746)
T KOG0354|consen 443 AEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNS 520 (746)
T ss_pred cceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCC
Confidence 32 33358999999999999999999999999999999999999999999999999999999999 998 488
Q ss_pred eEEEEEccchHH
Q 010884 357 KSLLYYGMDDRR 368 (498)
Q Consensus 357 ~~~~~~~~~d~~ 368 (498)
.++++++..+..
T Consensus 521 ~~vll~t~~~~~ 532 (746)
T KOG0354|consen 521 KCVLLTTGSEVI 532 (746)
T ss_pred eEEEEEcchhHH
Confidence 899998854443
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1e-30 Score=274.28 Aligned_cols=325 Identities=20% Similarity=0.205 Sum_probs=234.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 010884 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (498)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (498)
+..+.++.+|.. +++.|..+...+..|+ ++.|+||+|||++|.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 45 vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 345566677875 6788888888777776 99999999999999999852 466799999999999999988777
Q ss_pred --cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH---HhhhhcCCccEEEEeccccccc---
Q 010884 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (498)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~~--- 172 (498)
+|+.+..+.++.....+...+ ..+|+|+||-.+.-.-+...+ ........+.++||||+|.+.-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 588899888887766554433 168999998866332222221 1123456689999999998742
Q ss_pred ------cCC--CChHHHHHHHHHHHhCC---------C------------------------------------------
Q 010884 173 ------WGH--DFRPSYRKLSSLRNYLP---------D------------------------------------------ 193 (498)
Q Consensus 173 ------~g~--~fr~~~~~l~~l~~~~~---------~------------------------------------------ 193 (498)
-|. .--..|.....+.+.+. .
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 010 00011111111111000 0
Q ss_pred -------------------------------------------------------------------CCEEEEeecCChH
Q 010884 194 -------------------------------------------------------------------VPILALTATAAPK 206 (498)
Q Consensus 194 -------------------------------------------------------------------~~~l~lSAT~~~~ 206 (498)
..+.+||+|+..+
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 0155666666433
Q ss_pred HHHHHHHHhCCCCCeEEecCCCCCceEEEEE---eecchhhHHHHHHHHHH--hcCCccEEEEeCccchHHHHHHHHHhC
Q 010884 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAG 281 (498)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~---~~~~~~~~~~~l~~~l~--~~~~~~~IVf~~t~~~~~~l~~~L~~~ 281 (498)
...+.+..++ .++..+.++|....... +.. ..+++..+.+.+. ...+.|+||||+|++.++.++..|.+.
T Consensus 354 -~~E~~~iY~l---~vv~IPtnkp~~R~d~~d~i~~t-~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 354 -EEEFEKIYNL---EVVVVPTNRPVIRKDLSDLVYKT-EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred -HHHHHHHhCC---CEEEeCCCCCeeeeeCCCeEEcC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 2333443333 23445566665543321 222 2456777766552 235789999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCC-------ccEEEEeCCCCCHHHHHHHHhhcCCCCC
Q 010884 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (498)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~-------v~~VI~~~~p~s~~~y~Q~~GRagR~g~ 354 (498)
|+++..+||+ +.+|+..+..|+.+...|+|||+++|+|+|++. .-+||+++.|.|...|.|+.||+||.|.
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 9999999998 789999999999999999999999999999998 4599999999999999999999999999
Q ss_pred CceEEEEEccchHH
Q 010884 355 PSKSLLYYGMDDRR 368 (498)
Q Consensus 355 ~~~~~~~~~~~d~~ 368 (498)
+|.+..|++.+|.-
T Consensus 507 ~G~s~~~ls~eD~l 520 (745)
T TIGR00963 507 PGSSRFFLSLEDNL 520 (745)
T ss_pred CcceEEEEeccHHH
Confidence 99999999988754
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.4e-31 Score=274.59 Aligned_cols=287 Identities=20% Similarity=0.233 Sum_probs=212.4
Q ss_pred EEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecCCCCHHHHHHHHHHHhcCCCccc
Q 010884 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (498)
Q Consensus 57 lv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (498)
++.+|||+|||.+|+..+ +..++.+||++|+++|+.|+++.+++ +|..+..+++..+..++...+..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 478999999999986433 45678999999999999999999987 6888889999999888888888887765 67
Q ss_pred EEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH--HHHHHHHHhCCCCCEEEEeecCChHHHHH
Q 010884 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (498)
Q Consensus 133 ~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 210 (498)
++++|+..+.. ....+++|||||+|..+.|+.++ |.| +.+..++....+.|++++|||++.+....
T Consensus 79 IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 88888765432 23458999999999999887654 445 45777888888999999999998876654
Q ss_pred HHHHhCCCCCeEEec-----CCCCCceEEEEEeec-----chhhHHHHHHHHHHhcCCccEEEEeCccch----------
Q 010884 211 VMESLCLQNPLVLKS-----SFNRPNLFYEVRYKD-----LLDDAYADLCSVLKANGDTCAIVYCLERTT---------- 270 (498)
Q Consensus 211 i~~~l~~~~~~~~~~-----~~~r~ni~~~v~~~~-----~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~---------- 270 (498)
+.. + ....+.. ....|.+...-.... .....++.+.+.++. ++++|||+|++-.
T Consensus 147 ~~~--g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 147 AKQ--K--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred Hhc--C--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCcCCCeeEhhhCc
Confidence 422 1 1111110 111222222111110 112233344444433 5679999776532
Q ss_pred --------------------------------------------------HHHHHHHHHhC--CCceEeecCCCCHHHH-
Q 010884 271 --------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR- 297 (498)
Q Consensus 271 --------------------------------------------------~~~l~~~L~~~--g~~~~~~h~~l~~~~R- 297 (498)
++++++.|.+. +.++..+|++++...+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 58888999886 7889999999987766
Q ss_pred -HHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 298 -SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 298 -~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
..+++.|.+|+.+|||+|++++.|+|+|+|++|+..+... ....|+|.+|||||.+..|.+++...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8999999999999999999999999999999987554432 35789999999999999999886543
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5.7e-30 Score=261.65 Aligned_cols=324 Identities=20% Similarity=0.260 Sum_probs=258.1
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHH
Q 010884 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (498)
Q Consensus 18 ~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g------~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~ 88 (498)
.+++....+.+.+....+|+ +|..|++++..|... -.=++++..|||||+++++.++ ..+..+.+.+||-
T Consensus 243 ~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTE 321 (677)
T COG1200 243 IPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTE 321 (677)
T ss_pred CCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHH
Confidence 34566666777777778986 999999999998854 2458999999999998887665 4688999999999
Q ss_pred HHHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEE
Q 010884 89 ALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (498)
Q Consensus 89 ~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (498)
-|+.|..+.+.+ +|+.+..+.+....+.+..+...+.+|. ++++++|.-.+.- .....++.++||
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALiQd---------~V~F~~LgLVIi 390 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALIQD---------KVEFHNLGLVII 390 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhhhc---------ceeecceeEEEE
Confidence 999999998777 5889999999999999999999999987 8888777665542 334456899999
Q ss_pred eccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhC-CCCCeEEecCCCCCceEEEEEeecch
Q 010884 165 DEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC-LQNPLVLKSSFNRPNLFYEVRYKDLL 242 (498)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~~~r~ni~~~v~~~~~~ 242 (498)
||=|+..- ..-..|+.+-. ...++.|||||-|.... ....+ +.-..+-..+..|..|.-.+......
T Consensus 391 DEQHRFGV---------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~~ 459 (677)
T COG1200 391 DEQHRFGV---------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHERR 459 (677)
T ss_pred eccccccH---------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccccH
Confidence 99999532 22234555555 56799999999998765 33333 33333344466677776666666555
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccc--------hHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEE
Q 010884 243 DDAYADLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (498)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~t~~--------~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 312 (498)
+..++.+.+-+. .+.++.|.|+-.+ .++.+++.|+.. ++++..+||.|+++++++++++|++|+++||
T Consensus 460 ~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 460 PEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred HHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 566666666665 4678889997664 455677777753 6679999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEEccch
Q 010884 313 VATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (498)
Q Consensus 313 vaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~~~~~~~~d 366 (498)
|||.+.+.|||+||..++|..+.-+ .+++.-|-.||+||.+..+.|+++|.+..
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999998754 78999999999999999999999998765
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=7.7e-30 Score=267.08 Aligned_cols=331 Identities=20% Similarity=0.237 Sum_probs=236.1
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHhHhc-------------CCCeEEEeCcHHHHHHHHHH
Q 010884 31 RWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-------------KPGIVLVVSPLIALMENQVI 96 (498)
Q Consensus 31 ~~~fg~~~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l~~l~-------------~~~~~lvl~P~~~L~~q~~~ 96 (498)
+..|+|..|...|.++++.+.+. .+++++||||+|||-.|++.+|. ...++++|+|++||+.+.++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 46789999999999999987754 69999999999999999887763 24589999999999999998
Q ss_pred HHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccc--cChhhHHHHHhhhhcCCccEEEEeccccc
Q 010884 97 GLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT--ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (498)
Q Consensus 97 ~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v--~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (498)
.+.+ +|+.+.-+++......-. +. ..+++++|||.. .|.... ....-.+.++++||||+|.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~---~d~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSV---GDSALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeec---cchhhhhheeeEEeeeehhh
Confidence 8776 588888888876544322 21 289999999953 232111 00112234899999999999
Q ss_pred cc-cCCCChHHHHHHHHH-HHhCCCCCEEEEeecCChHHHHHHHHHhCCCCC--eE-EecCCCCCceEEEEE---eec--
Q 010884 171 SS-WGHDFRPSYRKLSSL-RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LV-LKSSFNRPNLFYEVR---YKD-- 240 (498)
Q Consensus 171 ~~-~g~~fr~~~~~l~~l-~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~--~~-~~~~~~r~ni~~~v~---~~~-- 240 (498)
-+ +|.-...-..+..++ ......+.+++||||+++- .|+..+|+.+.+ .. +...+..-.+...+. .+.
T Consensus 251 hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~ 328 (1230)
T KOG0952|consen 251 HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNR 328 (1230)
T ss_pred cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeecccch
Confidence 65 453222111222111 1334578999999999876 477888877632 22 222332222322222 110
Q ss_pred -----chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCC-----------------------CceEeecCCC
Q 010884 241 -----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-----------------------ISCAAYHAGL 292 (498)
Q Consensus 241 -----~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g-----------------------~~~~~~h~~l 292 (498)
..+..++.+.+++.+ +.+++|||.+|..+.+.|+.|.+.+ .....+|+||
T Consensus 329 ~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm 406 (1230)
T KOG0952|consen 329 QQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGM 406 (1230)
T ss_pred hhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhccccc
Confidence 112234555666654 6789999999999999999997531 1357899999
Q ss_pred CHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCC-----C------CHHHHHHHHhhcCCCC--CCceEE
Q 010884 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----K------SMEAFYQESGRAGRDQ--LPSKSL 359 (498)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p-----~------s~~~y~Q~~GRagR~g--~~~~~~ 359 (498)
.-.+|..+.+.|..|.++||+||..++.|+|+|.- .||..+.+ + +.-+-+|..|||||.+ ..|.++
T Consensus 407 ~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~gi 485 (1230)
T KOG0952|consen 407 LRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGI 485 (1230)
T ss_pred chhhHHHHHHHHhcCCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEE
Confidence 99999999999999999999999999999999954 55544433 2 6778899999999964 467888
Q ss_pred EEEccchHHHHHHHHHhcc
Q 010884 360 LYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 360 ~~~~~~d~~~~~~~~~~~~ 378 (498)
++.+.+-......++....
T Consensus 486 IiTt~dkl~~Y~sLl~~~~ 504 (1230)
T KOG0952|consen 486 IITTRDKLDHYESLLTGQN 504 (1230)
T ss_pred EEecccHHHHHHHHHcCCC
Confidence 8888777777777766543
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=8.5e-30 Score=261.88 Aligned_cols=296 Identities=20% Similarity=0.256 Sum_probs=206.5
Q ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc---eeEe
Q 010884 36 HAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA---GEFL 108 (498)
Q Consensus 36 ~~~~~~~Q~~~i~~i~~----g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~---~~~~ 108 (498)
.-.+|++|++|+.++.. ++..++++|||+|||.+++..+-.....+|||+|+.+|+.||.+.+...... ...+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~ 113 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY 113 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCcccccee
Confidence 34599999999999998 8899999999999999887766666666999999999999998877764332 1222
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (498)
.++.. ...+ ..+.++|...+.... .......+.+++||+||||++.... |..+....
T Consensus 114 ~~~~~------------~~~~-~~i~vat~qtl~~~~----~l~~~~~~~~~liI~DE~Hh~~a~~------~~~~~~~~ 170 (442)
T COG1061 114 GGGEK------------ELEP-AKVTVATVQTLARRQ----LLDEFLGNEFGLIIFDEVHHLPAPS------YRRILELL 170 (442)
T ss_pred cCcee------------ccCC-CcEEEEEhHHHhhhh----hhhhhcccccCEEEEEccccCCcHH------HHHHHHhh
Confidence 21110 0011 347777766665533 1111222358999999999987622 34443333
Q ss_pred HhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec--------CCCCCceEEEEEeecch------------------
Q 010884 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--------SFNRPNLFYEVRYKDLL------------------ 242 (498)
Q Consensus 189 ~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------~~~r~ni~~~v~~~~~~------------------ 242 (498)
.. ..++++||||+.......+.....+..+.++.. ++-.|..++.+......
T Consensus 171 ~~--~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 171 SA--AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred hc--ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 22 222899999987544222222222222444322 23333333333321100
Q ss_pred ------------------hhHHHHHHHHHHhc-CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHH
Q 010884 243 ------------------DDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (498)
Q Consensus 243 ------------------~~~~~~l~~~l~~~-~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 303 (498)
..+...+...+..+ .+.+++|||.++.++..++..+...|+ +..+.+..+..+|..+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 249 ARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 01122223333333 366899999999999999999999888 8999999999999999999
Q ss_pred HHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCC-CCCCce
Q 010884 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (498)
Q Consensus 304 f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR-~g~~~~ 357 (498)
|+.|.+++||++.++..|+|+|+++++|......|...|+||+||.-| ...++.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999 433443
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=4.1e-30 Score=284.02 Aligned_cols=299 Identities=18% Similarity=0.228 Sum_probs=200.6
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-C-----CCeEEEeCc----HHHHHHHHHHHHHH-cCCceeEecC
Q 010884 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-K-----PGIVLVVSP----LIALMENQVIGLKE-KGIAGEFLSS 110 (498)
Q Consensus 42 ~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-~-----~~~~lvl~P----~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (498)
.-.+++.++..++.++++|+||||||. ++|.+. . .+.+++.-| .++|+.+..+.+.. +|-.+.+-..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 445667777777788899999999998 788542 1 234455557 56888887777764 4433322110
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc-ccccCCCChHHHHHHHHHHH
Q 010884 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRN 189 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~ 189 (498)
.. ... ....+|+|+||-++.. .+.....+..+++|||||||. ..+ .||... .+..+..
T Consensus 156 f~---------~~~---s~~t~I~v~TpG~LL~-----~l~~d~~Ls~~~~IIIDEAHERsLn--~DfLLg--~Lk~lL~ 214 (1294)
T PRK11131 156 FN---------DQV---SDNTMVKLMTDGILLA-----EIQQDRLLMQYDTIIIDEAHERSLN--IDFILG--YLKELLP 214 (1294)
T ss_pred Cc---------ccc---CCCCCEEEEChHHHHH-----HHhcCCccccCcEEEecCccccccc--cchHHH--HHHHhhh
Confidence 00 000 1235676666654432 222233467799999999995 555 346543 2444555
Q ss_pred hCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCC-ceEEEEEeecc---hhhHHHHHHHHH---HhcCCccEE
Q 010884 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVL---KANGDTCAI 262 (498)
Q Consensus 190 ~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-ni~~~v~~~~~---~~~~~~~l~~~l---~~~~~~~~I 262 (498)
..|+.++|++|||++.+. +.+.+ ...|.+...+...| .+.|....... ..+.+..+...+ ...+.+.+|
T Consensus 215 ~rpdlKvILmSATid~e~---fs~~F-~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 215 RRPDLKVIITSATIDPER---FSRHF-NNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred cCCCceEEEeeCCCCHHH---HHHHc-CCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 557899999999998653 33333 33454433222211 22222211110 122333333332 234567899
Q ss_pred EEeCccchHHHHHHHHHhCCCc---eEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC----
Q 010884 263 VYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---- 335 (498)
Q Consensus 263 Vf~~t~~~~~~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~---- 335 (498)
||++++++++.+++.|.+.+++ +..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||++++
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999988765 6789999999999999886 578899999999999999999999999863
Q ss_pred -----------C---CCHHHHHHHHhhcCCCCCCceEEEEEccchHHHH
Q 010884 336 -----------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (498)
Q Consensus 336 -----------p---~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~ 370 (498)
| -|.++|.||+|||||. .+|.|+.+|+..|...+
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh
Confidence 3 4678999999999999 59999999998876543
No 83
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.4e-28 Score=264.53 Aligned_cols=322 Identities=20% Similarity=0.200 Sum_probs=261.0
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEcCCCchHHHHHHHh---HhcCCCeEEEeCcHH
Q 010884 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLI 88 (498)
Q Consensus 18 ~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~----g~--dvlv~apTG~GKTl~~~l~---~l~~~~~~lvl~P~~ 88 (498)
-.++++.+.+..+...|+|. -||-|..||+.+.+ ++ |=++|+..|.|||-+++-+ +++.++.+.|++||.
T Consensus 575 ~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTT 653 (1139)
T COG1197 575 FAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTT 653 (1139)
T ss_pred CCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Confidence 34777788899999999997 58999999999874 33 7899999999999887754 456789999999999
Q ss_pred HHHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEE
Q 010884 89 ALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (498)
Q Consensus 89 ~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (498)
-|++|..+.++. +++++..++.-.+.++...+...+..|. ++|+++|.-++.+. .....++++||
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~kd---------v~FkdLGLlII 722 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSKD---------VKFKDLGLLII 722 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCCC---------cEEecCCeEEE
Confidence 999999999887 6788899999999999999999999997 89988888766543 33455899999
Q ss_pred eccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEe-cCCCCCceEEEEEeecchh
Q 010884 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDLLD 243 (498)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~ni~~~v~~~~~~~ 243 (498)
||=|+..- ..-..++....++-++.|||||-|.+.. ....++.+-.++. .+.+|-.+.-.|...+..
T Consensus 723 DEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~- 790 (1139)
T COG1197 723 DEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL- 790 (1139)
T ss_pred echhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCChH-
Confidence 99999542 2334455555689999999999999887 6666777654443 345666665555544321
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccc
Q 010884 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (498)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~G 321 (498)
-.-+.|..-+. .++++-..+|.++..+++++.|++. ..+++.-||.|++.+-+.++..|.+|+++|||||...+.|
T Consensus 791 ~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtG 868 (1139)
T COG1197 791 LIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETG 868 (1139)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecC
Confidence 11222332222 3566777789999999999999985 5678999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 322 IDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 322 iD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
||+|++..+|..+... .+++.+|-.||+||..+.++|+++|.+.
T Consensus 869 IDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 869 IDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999877654 7999999999999999999999999754
No 84
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.2e-31 Score=237.72 Aligned_cols=298 Identities=17% Similarity=0.288 Sum_probs=217.7
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~ 87 (498)
+..|+++.+++++++++-. .||.+|...|.++|+...-|-|++++|..|.|||.+|.+..|+. .-.++|+|.|
T Consensus 41 ssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 5678889999999999997 79999999999999999999999999999999999999988875 1257999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH--hhhhcCCcc
Q 010884 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (498)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~--~~~~~~~l~ 160 (498)
++|+-|...+..++ .+++..+.++..-+........ .|++ +++|||++..|. +..++..+.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~Phi--------vVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHI--------VVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeE--------EEcCcHHHHHHHHhccCchhhcc
Confidence 99999987776653 4556666666554444433332 2223 677888777663 445567789
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE-ecCCCCCc---e-EEE
Q 010884 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPN---L-FYE 235 (498)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~n---i-~~~ 235 (498)
.+|+||++.+.+|- |.|.+...+ ++..-+..|++.+|||++.+.+.-..+. +++|..+ ...-..-. + .|.
T Consensus 188 hFvlDEcdkmle~l-DMrRDvQEi--fr~tp~~KQvmmfsatlskeiRpvC~kF--mQdPmEi~vDdE~KLtLHGLqQ~Y 262 (387)
T KOG0329|consen 188 HFVLDECDKMLEQL-DMRRDVQEI--FRMTPHEKQVMMFSATLSKEIRPVCHKF--MQDPMEIFVDDEAKLTLHGLQQYY 262 (387)
T ss_pred eeehhhHHHHHHHH-HHHHHHHHH--hhcCcccceeeeeeeecchhhHHHHHhh--hcCchhhhccchhhhhhhhHHHHH
Confidence 99999999998864 456555544 2333347899999999999987644443 4455422 11111101 1 111
Q ss_pred EEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEe
Q 010884 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (498)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT 315 (498)
+..++ ..|-..+.++|....-.+++||+.+... | + | +.+ +|||
T Consensus 263 vkLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat 305 (387)
T KOG0329|consen 263 VKLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVAT 305 (387)
T ss_pred Hhhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHh
Confidence 11111 2344445555555555679999987764 1 0 2 123 8999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccch
Q 010884 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (498)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d 366 (498)
+.||+|+|+..|..||+||+|.+..+|+||+|||||.|..|.++.|++..+
T Consensus 306 ~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 306 DLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred hhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 999999999999999999999999999999999999999999999988654
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=3.2e-28 Score=270.07 Aligned_cols=300 Identities=18% Similarity=0.199 Sum_probs=197.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecCCCCHHH
Q 010884 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (498)
Q Consensus 44 ~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (498)
.+++.++..++.++++|+||||||. ++|.+. ..+.+++.-|.+--+.....++.+ +|.+.....+.....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~- 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF- 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC-
Confidence 4567777777788999999999997 667543 134566677887766666655544 454432221111000
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc-ccccCCCChHHHHHHHHHHHhCCCCC
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVP 195 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~ 195 (498)
.+. ...+.+|.|+|+-++. ..+.....+..+++|||||||. ..+- ||--. .+..+....|+.+
T Consensus 150 -----~~~--~s~~T~I~~~TdGiLL-----r~l~~d~~L~~~~~IIIDEaHERsL~~--D~LL~--lLk~il~~rpdLK 213 (1283)
T TIGR01967 150 -----HDQ--VSSNTLVKLMTDGILL-----AETQQDRFLSRYDTIIIDEAHERSLNI--DFLLG--YLKQLLPRRPDLK 213 (1283)
T ss_pred -----Ccc--cCCCceeeeccccHHH-----HHhhhCcccccCcEEEEcCcchhhccc--hhHHH--HHHHHHhhCCCCe
Confidence 000 0123567666665442 2233333466799999999995 5553 34332 2444555668899
Q ss_pred EEEEeecCChHHHHHHHHHhCCCCCeEEecCCC-CCceEEEEEeecc---hhhHHHHHHHHHH---hcCCccEEEEeCcc
Q 010884 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLER 268 (498)
Q Consensus 196 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~ni~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~IVf~~t~ 268 (498)
+|+||||+.... +.+.++ ..|.+...+.. ...+.|....... ..+....+...+. ....+.+|||++++
T Consensus 214 lIlmSATld~~~---fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPER---FSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHHH---HHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 999999997643 333332 34444333222 1222332111110 0122333333332 22457899999999
Q ss_pred chHHHHHHHHHhCC---CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC--------
Q 010884 269 TTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (498)
Q Consensus 269 ~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~-------- 337 (498)
.+++.+++.|.+.+ +.+..+||+|+.++|..+++.+ +..+|||||+++++|||+|+|++||++++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999999864 4588999999999999886543 3468999999999999999999999999543
Q ss_pred ----------CHHHHHHHHhhcCCCCCCceEEEEEccchHHH
Q 010884 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (498)
Q Consensus 338 ----------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~ 369 (498)
|.++|.||+|||||.| +|.|+.+|+..+...
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6789999999999998 999999999887654
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3e-27 Score=250.39 Aligned_cols=325 Identities=20% Similarity=0.200 Sum_probs=233.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 010884 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (498)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (498)
+..+.++.+|.. +++.|.-+.-.+..|+ ++.|.||.|||+++.+|++. .+..+-|++|+--|+.+..+.+..
T Consensus 69 vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 445667778876 5688877766666776 99999999999999988864 577899999999999998888765
Q ss_pred --cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc---
Q 010884 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (498)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (498)
+|+.+..+.+......+...+. .+|.|+|.--+.-.-+...+. .......+.+.||||+|.++=
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 7999999988888877766553 688998877554332222221 111234578999999998631
Q ss_pred --------cCCCChHHHHHHHHHHHhCC--------------------CC------------------------------
Q 010884 173 --------WGHDFRPSYRKLSSLRNYLP--------------------DV------------------------------ 194 (498)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~--------------------~~------------------------------ 194 (498)
........|..+..+...+. ..
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 11111122222221111100 00
Q ss_pred -------------------------------------------------------------------------------C
Q 010884 195 -------------------------------------------------------------------------------P 195 (498)
Q Consensus 195 -------------------------------------------------------------------------------~ 195 (498)
+
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 1
Q ss_pred EEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEe--ecchhhHHHHHHHHHHh--cCCccEEEEeCccchH
Q 010884 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (498)
Q Consensus 196 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~ 271 (498)
+.+||+|+..+ ...+.+..++ .++..+.++|.+...... -.....++..+.+.+.. ..+.|+||||+|+..+
T Consensus 378 l~GmTGTa~~e-~~Ef~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 378 LSGMTGTAKTE-EEEFREIYNM---EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hhccCCCCHHH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 44555555322 2233333332 233445566655433221 11224677788877744 3678999999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC---Ccc-----EEEEeCCCCCHHHHH
Q 010884 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFY 343 (498)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p---~v~-----~VI~~~~p~s~~~y~ 343 (498)
+.++..|.+.|+++..+||++...++..+.++++.|. |+|||+++|+|+|++ +|. +||+++.|.|...|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888888888887776 999999999999994 899 999999999999999
Q ss_pred HHHhhcCCCCCCceEEEEEccchH
Q 010884 344 QESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 344 Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
|+.||+||.|.+|.+..|++.+|.
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999998864
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=250.29 Aligned_cols=331 Identities=20% Similarity=0.246 Sum_probs=234.4
Q ss_pred hcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHhHhcC--------------CCeEEEeCcHHHHHHHHHHH
Q 010884 33 HFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 33 ~fg~~~~~~~Q~~~i~~i~~g~-dvlv~apTG~GKTl~~~l~~l~~--------------~~~~lvl~P~~~L~~q~~~~ 97 (498)
.+|..+|.+.|..+..+.+.+. +++++||||+|||.++++-+|+. +.++++++|+.+|++.++..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 3588899999999999988874 89999999999999999888742 45799999999999999997
Q ss_pred HHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccc---cChhhHHHHHhhhhcCCccEEEEeccccc
Q 010884 98 LKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT---ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (498)
Q Consensus 98 l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v---~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (498)
+.+ +||.+.-.++........ + ....++++|||.. ...+--....+ .++++||||.|.+
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~q-----i----eeTqVIV~TPEK~DiITRk~gdraY~q-----lvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQ-----I----EETQVIVTTPEKWDIITRKSGDRAYEQ-----LVRLLIIDEIHLL 449 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhh-----h----hcceeEEeccchhhhhhcccCchhHHH-----HHHHHhhhhhhhc
Confidence 655 788888887765543221 1 1278999999943 22211111111 2678999999998
Q ss_pred c-ccCCCChHHHHH-HHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEe--cCCCCCceEEEEEeecc--hhh
Q 010884 171 S-SWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDL--LDD 244 (498)
Q Consensus 171 ~-~~g~~fr~~~~~-l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~ni~~~v~~~~~--~~~ 244 (498)
- ++|+-...--.+ ..+......+..+++||||+++- .|+...|....+.++. .++....+.+++.-... ...
T Consensus 450 hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 4 455321110001 11111122377899999999876 4667766665544433 34444456555543221 111
Q ss_pred HHHH-----HHHHHHhcCCccEEEEeCccchHHHHHHHHHhC-------------------------------------C
Q 010884 245 AYAD-----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-------------------------------------G 282 (498)
Q Consensus 245 ~~~~-----l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~-------------------------------------g 282 (498)
.++. ..++++..+.+++|||+.+|+++-+.|+.++.. .
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 2222 223456667789999999999999988888720 2
Q ss_pred CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEE----EeCC------CCCHHHHHHHHhhcCCC
Q 010884 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKSMEAFYQESGRAGRD 352 (498)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI----~~~~------p~s~~~y~Q~~GRagR~ 352 (498)
+..+++|+||+..+|..+...|.+|+++|+|+|-.+++|+|+|.-.++| .|++ +.|+.+-+||.|||||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 3578999999999999999999999999999999999999999777766 3453 34899999999999997
Q ss_pred CC--CceEEEEEccchHHHHHHHHHhccc
Q 010884 353 QL--PSKSLLYYGMDDRRRMEFILSKNQS 379 (498)
Q Consensus 353 g~--~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (498)
+. .|..++.-+.++......++++..+
T Consensus 688 ~~D~~gegiiit~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLSLMNQQLP 716 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence 64 5667777777777666655554433
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.1e-26 Score=249.92 Aligned_cols=311 Identities=13% Similarity=0.105 Sum_probs=193.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---C--CCeEEEeCcHHHHHHHHHHHHHH-----cC-
Q 010884 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (498)
Q Consensus 34 fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~--~~~~lvl~P~~~L~~q~~~~l~~-----~g- 102 (498)
|+..++||+|..+......+.-+++.+|||+|||.+++..+.. . ...+++..||++++++...++.+ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455799999988554434567899999999999988766532 2 35899999999999999999875 11
Q ss_pred CceeEecCCCCHHHH-HH--------------------HHHHHhcCCCcccEEEECcccccChhhHH--HHHhhhhcCCc
Q 010884 103 IAGEFLSSTQTMQVK-TK--------------------IYEDLDSGKPSLRLLYVTPELTATPGFMS--KLKKIHSRGLL 159 (498)
Q Consensus 103 i~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~~~~~~l~~tpe~v~t~~~~~--~l~~~~~~~~l 159 (498)
..+...++....... .. .........--..+.++|+..+....+.. ...+...+ .-
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L-a~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL-GR 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-cc
Confidence 234445544332110 00 00000000011356666665432111000 00011110 13
Q ss_pred cEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCC--------CeEE--------
Q 010884 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN--------PLVL-------- 223 (498)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~--------~~~~-------- 223 (498)
++|||||+|.+..+. ...+..+.++... .+.++|+||||++...++.+...++... |.+-
T Consensus 441 svvIiDEVHAyD~ym---~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 441 SVLIVDEVHAYDAYM---YGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred CeEEEechhhCCHHH---HHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 589999999964321 1112222222222 3678999999999998887777554321 1110
Q ss_pred --ecCCC----CCceEEEEEee--c---chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCC---CceEeec
Q 010884 224 --KSSFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYH 289 (498)
Q Consensus 224 --~~~~~----r~ni~~~v~~~--~---~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g---~~~~~~h 289 (498)
..... .......+... . .....+..+.+.+ ..+++++|||||++.|+++++.|++.+ ..+..+|
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 00000 00111111111 1 0112223333333 246789999999999999999999865 6799999
Q ss_pred CCCCHHHH----HHHHHHH-HcCC---CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCC
Q 010884 290 AGLNDKAR----SSVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (498)
Q Consensus 290 ~~l~~~~R----~~~~~~f-~~g~---~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~ 354 (498)
|.++..+| .++++.| ++|+ ..|||||+++++|||+ +++++|....| +..++||+||+||.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999 4567778 5665 4799999999999999 68999998888 7899999999999886
No 89
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.95 E-value=2.7e-28 Score=233.54 Aligned_cols=268 Identities=17% Similarity=0.239 Sum_probs=177.9
Q ss_pred eEEEeCcHHHHHHHHHHHHHHcCCce-----e--EecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh
Q 010884 80 IVLVVSPLIALMENQVIGLKEKGIAG-----E--FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (498)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~l~~~gi~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~ 152 (498)
..+|+-|.++|++|....++++.... . .+.++. ..+.....+.. ...| ++.||+++..+.+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv---~~r~Q~~ql~~---g~~i------vvGtpgRl~~~is 355 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGV---LKRTQCKQLKD---GTHI------VVGTPGRLLQPIS 355 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhH---HhHHHHHHhhc---Ccee------eecCchhhhhhhh
Confidence 47999999999999888776643221 1 111110 01111111222 2444 5555665544433
Q ss_pred h--hhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC-------CCCEEEEeecCChHHHHHHH-HHhCCCCCeE
Q 010884 153 I--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVM-ESLCLQNPLV 222 (498)
Q Consensus 153 ~--~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~~l~lSAT~~~~~~~~i~-~~l~~~~~~~ 222 (498)
. ..+...+++|+|||+.++.-|.+ ..|.++...+| ..+.+.+|||+..-....+. +.+.++.-+-
T Consensus 356 ~g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVd 430 (725)
T KOG0349|consen 356 KGLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVD 430 (725)
T ss_pred ccceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEe
Confidence 2 23344789999999999887754 56666666665 46789999997542222121 1112211111
Q ss_pred EecCCC----------------------------------CCceEEEEEeecchhhHHH-----HHHHHHHhcCCccEEE
Q 010884 223 LKSSFN----------------------------------RPNLFYEVRYKDLLDDAYA-----DLCSVLKANGDTCAIV 263 (498)
Q Consensus 223 ~~~~~~----------------------------------r~ni~~~v~~~~~~~~~~~-----~l~~~l~~~~~~~~IV 263 (498)
++..-. +.|+...-...+....... .-...++++...++||
T Consensus 431 LkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 431 LKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred cccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 111100 0111000000000011111 1123345566778999
Q ss_pred EeCccchHHHHHHHHHhCC---CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHH
Q 010884 264 YCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (498)
Q Consensus 264 f~~t~~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~ 340 (498)
||+|+.+|+.|.+++.+.| ++|+.+||+..+.+|.+.++.|+.+.+++||||+++++|+|+.++.++|+..+|....
T Consensus 511 fcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~ 590 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKT 590 (725)
T ss_pred EEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccc
Confidence 9999999999999999864 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCceEEEEEcc
Q 010884 341 AFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 341 ~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
+|+||+||+||+.+-|.++.++..
T Consensus 591 nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 591 NYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhhhhhccchhhhcceeEEEeec
Confidence 999999999999999999988764
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=238.66 Aligned_cols=320 Identities=21% Similarity=0.255 Sum_probs=220.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh--c-CCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--A-KPGIVLVVSPLIALMENQVIGLKEKGIA 104 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l--~-~~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (498)
..+...|+|. +-++|++||-++..|..|+|.|+|.+|||+++..++. + +..++++-+|.++|-+|..+.++..--.
T Consensus 288 pe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 288 PEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred hhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc
Confidence 3344457775 7789999999999999999999999999998765432 3 3568999999999999999999884333
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc--cCCCChHHHH
Q 010884 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYR 182 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~ 182 (498)
+..+++.. .-+|....+++|.|++.+-- +....-...+.+||+||+|-+.+ +|.
T Consensus 367 vgLlTGDv-------------qinPeAsCLIMTTEILRsML----YrgadliRDvE~VIFDEVHYiND~eRGv------- 422 (1248)
T KOG0947|consen 367 VGLLTGDV-------------QINPEASCLIMTTEILRSML----YRGADLIRDVEFVIFDEVHYINDVERGV------- 422 (1248)
T ss_pred cceeecce-------------eeCCCcceEeehHHHHHHHH----hcccchhhccceEEEeeeeecccccccc-------
Confidence 33444332 22456778888887764421 12222234488999999999976 442
Q ss_pred HHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCC-CeE-EecCCCCCce--EEEEEeecc----------------
Q 010884 183 KLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQN-PLV-LKSSFNRPNL--FYEVRYKDL---------------- 241 (498)
Q Consensus 183 ~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~-~~~-~~~~~~r~ni--~~~v~~~~~---------------- 241 (498)
-+.++.-.+| ++.+|+||||.++... +..+.|-.. ..+ +.+...||.- +|-...+..
T Consensus 423 VWEEViIMlP~HV~~IlLSATVPN~~E--FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~ 500 (1248)
T KOG0947|consen 423 VWEEVIIMLPRHVNFILLSATVPNTLE--FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIK 500 (1248)
T ss_pred cceeeeeeccccceEEEEeccCCChHH--HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcch
Confidence 2333333444 8999999999887642 344444321 122 2222233311 000000000
Q ss_pred -------------------------------------h----------h---hHHHHHHHHHHhcCCccEEEEeCccchH
Q 010884 242 -------------------------------------L----------D---DAYADLCSVLKANGDTCAIVYCLERTTC 271 (498)
Q Consensus 242 -------------------------------------~----------~---~~~~~l~~~l~~~~~~~~IVf~~t~~~~ 271 (498)
. . ..+-.+...++...--|+||||-+++.|
T Consensus 501 ~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrC 580 (1248)
T KOG0947|consen 501 DAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRC 580 (1248)
T ss_pred hhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccH
Confidence 0 0 1244556666665666899999999999
Q ss_pred HHHHHHHHhCCC---------------------------------------ceEeecCCCCHHHHHHHHHHHHcCCCeEE
Q 010884 272 DELSAYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (498)
Q Consensus 272 ~~l~~~L~~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 312 (498)
++.|++|....+ .++.+|||+=+--++-+...|..|-++||
T Consensus 581 de~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVL 660 (1248)
T KOG0947|consen 581 DEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVL 660 (1248)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEE
Confidence 999999975322 35789999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCC---------CHHHHHHHHhhcCCCCCC--ceEEEEEcc--chHHHHHHHHH
Q 010884 313 VATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQLP--SKSLLYYGM--DDRRRMEFILS 375 (498)
Q Consensus 313 vaT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q~~GRagR~g~~--~~~~~~~~~--~d~~~~~~~~~ 375 (498)
+||.+|+||||.| .|.||+-.+.+ .+-+|+|++|||||.|.. |+.+++... .+...++.++-
T Consensus 661 FATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 661 FATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred eehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 9999999999999 67777666554 788999999999999974 555555443 34555555544
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.6e-25 Score=235.59 Aligned_cols=324 Identities=21% Similarity=0.195 Sum_probs=234.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (498)
..+.++.+|.. +++.|.-..-.+..|+ ++.|+||+|||+++.+|++. .+..+-|++|+..|+.+..+.+..
T Consensus 71 rEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 71 REASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred HHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 35556667875 5688877666666665 99999999999999999852 355678999999999998888776
Q ss_pred -cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc----
Q 010884 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS---- 172 (498)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~---- 172 (498)
+|+.+..+.++.....+...+. .+|+|+||-.+.-.-+...+. .......+.++||||||.++=
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeAr 219 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEAR 219 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCC
Confidence 6899999998888877665542 689999988764322222221 112245688999999998731
Q ss_pred -------cCCCChHHHHHHHHHHHhCC---------C-------------------------------------------
Q 010884 173 -------WGHDFRPSYRKLSSLRNYLP---------D------------------------------------------- 193 (498)
Q Consensus 173 -------~g~~fr~~~~~l~~l~~~~~---------~------------------------------------------- 193 (498)
....-...|..+..+...+. .
T Consensus 220 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 220 TPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred CceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence 11111112222222222110 0
Q ss_pred ------------------------------------------------------------------CCEEEEeecCChHH
Q 010884 194 ------------------------------------------------------------------VPILALTATAAPKV 207 (498)
Q Consensus 194 ------------------------------------------------------------------~~~l~lSAT~~~~~ 207 (498)
..+.+||+|+..+
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te- 378 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE- 378 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH-
Confidence 0255666666433
Q ss_pred HHHHHHHhCCCCCeEEecCCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCC
Q 010884 208 QKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (498)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g 282 (498)
...+.+..++ .++..+.++|.+... ..+. ...+++..+.+.+.. ..+.|+||||+|++.++.+++.|.+.|
T Consensus 379 ~~E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~-t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g 454 (830)
T PRK12904 379 AEEFREIYNL---DVVVIPTNRPMIRIDHPDLIYK-TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG 454 (830)
T ss_pred HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 2333443333 244455666666544 2222 234678888888855 567899999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCc-----------------------------------
Q 010884 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV----------------------------------- 327 (498)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v----------------------------------- 327 (498)
+++..+||. +.+|+..+.+|+.+...|+|||+++|+|+|++==
T Consensus 455 i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (830)
T PRK12904 455 IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE 532 (830)
T ss_pred CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH
Confidence 999999995 7899999999999999999999999999998631
Q ss_pred ---cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHH
Q 010884 328 ---RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (498)
Q Consensus 328 ---~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~ 368 (498)
=+||....|.|..---|-.|||||.|.||.+..|++.+|.-
T Consensus 533 ~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 533 AGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred cCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 27889999999999999999999999999999999988743
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1.7e-25 Score=249.49 Aligned_cols=317 Identities=19% Similarity=0.217 Sum_probs=193.5
Q ss_pred CCCHHHHHHHHHHH----cC-CCEEEEcCCCchHHHHHHH--hHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCcee-
Q 010884 38 QFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQI--PALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGE- 106 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~----~g-~dvlv~apTG~GKTl~~~l--~~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~- 106 (498)
.+|++|.+||.++. .| +.++++||||+|||.+++. ..+. ..+++|+|+|+++|+.|....++..+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 58999999998876 23 5799999999999976432 2222 246899999999999999999998765332
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH-HhhhhcCCccEEEEeccccccc-----------cC
Q 010884 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS-----------WG 174 (498)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l-~~~~~~~~l~~iViDEaH~i~~-----------~g 174 (498)
.+....... ...... ...+.+++++|...+....+...- ......+.+++|||||||+... |.
T Consensus 493 ~~~~i~~i~---~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 493 TFASIYDIK---GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred chhhhhchh---hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 111100000 000111 122467877777654322111000 0112345688999999999531 11
Q ss_pred CCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHH------------HHhCCC---CCeEEecCCCCCceEEEE---
Q 010884 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM------------ESLCLQ---NPLVLKSSFNRPNLFYEV--- 236 (498)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~------------~~l~~~---~~~~~~~~~~r~ni~~~v--- 236 (498)
++...|.....+...+ +..+|+|||||.......+- ..-.+. .|..+...+....+.+..
T Consensus 568 -~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 568 -DQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred -hhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 1122234444445433 56789999999754322110 000000 112221111111111100
Q ss_pred -----------Eeecchh--------------------hHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC----
Q 010884 237 -----------RYKDLLD--------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---- 281 (498)
Q Consensus 237 -----------~~~~~~~--------------------~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~---- 281 (498)
......+ .....+.+.+....++++||||.++++|+.+++.|.+.
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 0000000 00112233333344578999999999999999988753
Q ss_pred --CC---ceEeecCCCCHHHHHHHHHHHHcCCC-eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCC-
Q 010884 282 --GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL- 354 (498)
Q Consensus 282 --g~---~~~~~h~~l~~~~R~~~~~~f~~g~~-~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~- 354 (498)
++ .+..+||+.+ ++..++++|+++.. .|+|+++++++|+|+|.|..||++.+++|...|.|++||+.|-..
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~ 803 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPE 803 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCcc
Confidence 22 4567899875 46779999999887 689999999999999999999999999999999999999999643
Q ss_pred -CceEEEEEc
Q 010884 355 -PSKSLLYYG 363 (498)
Q Consensus 355 -~~~~~~~~~ 363 (498)
.....++++
T Consensus 804 ~~K~~f~I~D 813 (1123)
T PRK11448 804 IGKTHFRIFD 813 (1123)
T ss_pred CCCceEEEEe
Confidence 233444444
No 93
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1e-25 Score=242.54 Aligned_cols=305 Identities=25% Similarity=0.280 Sum_probs=209.4
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHh---HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCce---
Q 010884 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAG--- 105 (498)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~--- 105 (498)
..+||+ +-++|++++..+..|..|+|+||||+|||++.... ++..+.++++.+|.+||.+|..+.+...-..+
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~ 192 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADM 192 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhh
Confidence 347886 78999999999999999999999999999875433 35567889999999999999999988743322
Q ss_pred -eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHH
Q 010884 106 -EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (498)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (498)
...++. ..-+++..+++.|-|++.+-.. ........+..||+||+|.|.+.. |. ...
T Consensus 193 vGL~TGD-------------v~IN~~A~clvMTTEILRnMly----rg~~~~~~i~~ViFDEvHyi~D~e---RG--~VW 250 (1041)
T COG4581 193 VGLMTGD-------------VSINPDAPCLVMTTEILRNMLY----RGSESLRDIEWVVFDEVHYIGDRE---RG--VVW 250 (1041)
T ss_pred ccceecc-------------eeeCCCCceEEeeHHHHHHHhc----cCcccccccceEEEEeeeeccccc---cc--hhH
Confidence 222211 1223456666666666644321 223345568999999999998743 22 334
Q ss_pred HHHHHhCC-CCCEEEEeecCChHHHH-HHHHHhCCCCCeEEecCCCCCc-eEEEEEee-------cchh----hH-----
Q 010884 185 SSLRNYLP-DVPILALTATAAPKVQK-DVMESLCLQNPLVLKSSFNRPN-LFYEVRYK-------DLLD----DA----- 245 (498)
Q Consensus 185 ~~l~~~~~-~~~~l~lSAT~~~~~~~-~i~~~l~~~~~~~~~~~~~r~n-i~~~v~~~-------~~~~----~~----- 245 (498)
....-.+| ++++++||||.++...- .++.... ..+..+.....||. +...+... +... ..
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~-~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVH-SQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhcc-CCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 44555566 57999999998876433 2233333 44444444444442 21111100 0000 00
Q ss_pred -------------------------------------HHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC-------
Q 010884 246 -------------------------------------YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------- 281 (498)
Q Consensus 246 -------------------------------------~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~------- 281 (498)
.-.+...+.....-++|+|+-+++.|+..+..+...
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 011233333334557999999999999999888621
Q ss_pred ---------------------CC-------------ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCc
Q 010884 282 ---------------------GI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327 (498)
Q Consensus 282 ---------------------g~-------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v 327 (498)
++ .++.+|+||=+..|..+...|..|-++|++||.++++|||.| +
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-a 488 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-A 488 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-c
Confidence 12 235899999999999999999999999999999999999999 6
Q ss_pred cEEEEeCCC---------CCHHHHHHHHhhcCCCCCC--ceEEEE
Q 010884 328 RLVCHFNIP---------KSMEAFYQESGRAGRDQLP--SKSLLY 361 (498)
Q Consensus 328 ~~VI~~~~p---------~s~~~y~Q~~GRagR~g~~--~~~~~~ 361 (498)
+.|+...+- -+...|.|+.|||||.|.. |.+++.
T Consensus 489 rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 489 RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 666655543 3899999999999999985 555555
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=6.6e-25 Score=240.52 Aligned_cols=307 Identities=17% Similarity=0.166 Sum_probs=213.3
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHH--HhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCC--ce
Q 010884 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPALA----KPGIVLVVSPLIALMENQVIGLKEKGI--AG 105 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~~~--l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi--~~ 105 (498)
+++|+|.+++..+. .|...|+.-..|.|||+..+ +..+. ..+++|||+|. +|+.+|.+.+.++.. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999998875 56788999999999997543 22222 24679999997 556889999998643 33
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (498)
..+.+ ....+......... ...++++++|.+++.... .......+++|||||||++.... ..+.
T Consensus 248 ~~~~G--~~~eR~~~~~~~~~-~~~~dVvITSYe~l~~e~------~~L~k~~W~~VIvDEAHrIKN~~-------Skls 311 (1033)
T PLN03142 248 VKFHG--NPEERAHQREELLV-AGKFDVCVTSFEMAIKEK------TALKRFSWRYIIIDEAHRIKNEN-------SLLS 311 (1033)
T ss_pred EEEeC--CHHHHHHHHHHHhc-ccCCCcceecHHHHHHHH------HHhccCCCCEEEEcCccccCCHH-------HHHH
Confidence 33333 22222222222211 224788888888765421 11222348999999999987633 3344
Q ss_pred HHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC---------------------------------------
Q 010884 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------------------------------------- 226 (498)
Q Consensus 186 ~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------------------------------------- 226 (498)
.....+.....++|||||-.+...+++..+.+-.|.++...
T Consensus 312 kalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 312 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 44444555567999999988888888887776655433110
Q ss_pred CCCCceEEEEEeecch--------------------------------------------------------------hh
Q 010884 227 FNRPNLFYEVRYKDLL--------------------------------------------------------------DD 244 (498)
Q Consensus 227 ~~r~ni~~~v~~~~~~--------------------------------------------------------------~~ 244 (498)
...|.....+...... ..
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 0011111111111100 01
Q ss_pred HHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcC---CCeEEEEeCccc
Q 010884 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFG 319 (498)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~vlvaT~a~~ 319 (498)
|+..|..++.. ..+.++|||+......+.|..+|...|+.+..+||+++..+|..+++.|.+. ...+|++|.++|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 11122222221 2356899999999999999999999999999999999999999999999753 345789999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
.|||+..+++||+||+|+|+....|++||+.|.|+...+.+|
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 999999999999999999999999999999999998776655
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=9.5e-25 Score=232.55 Aligned_cols=322 Identities=20% Similarity=0.181 Sum_probs=219.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (498)
.+-++.+|.. +++.|.-.--.+..|+ ++.|+||+|||++|.+|++. .+..++|++|++.|+.|..+.+..
T Consensus 73 Ea~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 73 EVSLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred HHHHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 4445567765 4477765555555555 99999999999999999974 456799999999999999888877
Q ss_pred cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc-----
Q 010884 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS----- 172 (498)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~----- 172 (498)
+|+.+..+.++.....+...+ ..+|+|+||-.+.-..+...+. ...-...+.++||||||.++=
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 588888888887766654443 2688888887763221111110 001124689999999998731
Q ss_pred ------cCCCChHHHHHHHHHHHhCC---------------CCCEEEEeec-----------------------------
Q 010884 173 ------WGHDFRPSYRKLSSLRNYLP---------------DVPILALTAT----------------------------- 202 (498)
Q Consensus 173 ------~g~~fr~~~~~l~~l~~~~~---------------~~~~l~lSAT----------------------------- 202 (498)
....-...|..+..+...+. ....+.||-.
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 11112233433332222110 1122333332
Q ss_pred --------------------------------------------------------------------------------
Q 010884 203 -------------------------------------------------------------------------------- 202 (498)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (498)
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence
Q ss_pred -------CChHHHHHHHHHhCCCCCeEEecCCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeCccch
Q 010884 203 -------AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 270 (498)
Q Consensus 203 -------~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~ 270 (498)
+..+. ..+.+..++ .++..+.++|.+.... .+. ....|+..+.+.+.. ..+.|+||||+|++.
T Consensus 382 LsGMTGTa~te~-~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~v~~-t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 382 LSGMTGTADTEA-YEFQQIYNL---EVVVIPTNRSMIRKDEADLVYL-TQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hccCCCCChhHH-HHHHHHhCC---CEEECCCCCCcceecCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 21110 111111111 1112334444433221 111 224567777666632 357899999999999
Q ss_pred HHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCC------------------------
Q 010884 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------------ 326 (498)
Q Consensus 271 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~------------------------ 326 (498)
++.++..|.+.|++...+||++.+.++..+.++|+.|. |+|||+++|+|+|+.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999995 9999999999999751
Q ss_pred ---------c-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 327 ---------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 327 ---------v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
| =+||-...+.|..---|-.|||||.|.||.+..|++.+|-
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 2788888899999999999999999999999999998774
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=233.92 Aligned_cols=341 Identities=19% Similarity=0.293 Sum_probs=229.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHH--HHHHcCCCEEEEcCCCchHHHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHHH
Q 010884 25 ALVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q~~~i--~~i~~g~dvlv~apTG~GKTl~~~l~~l----~~~~~~lvl~P~~~L~~q~~~~l 98 (498)
.......+.+|+..++.||.+++ +.++++++.+..+||++|||++.-+-++ .+...++.+.|..+.+++....+
T Consensus 210 k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l 289 (1008)
T KOG0950|consen 210 KVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISAL 289 (1008)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhh
Confidence 33444445579999999999998 5788899999999999999999887665 45788999999999999998888
Q ss_pred HHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccC
Q 010884 99 KEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (498)
Q Consensus 99 ~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (498)
..+. +++....+..+... ......+.++|.|+..+ ..+.+........+++|||||-|.+.+-|
T Consensus 290 ~~~~~~~G~~ve~y~g~~~p~~----------~~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 290 SPFSIDLGFPVEEYAGRFPPEK----------RRKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hhhccccCCcchhhcccCCCCC----------cccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 7754 44333332222111 11235677788776654 44556666666678999999999998865
Q ss_pred CCChHHHHHHHHHHHhC--CCCCEEEEeecCChHH-HHHHHHH-hCCC--CCeEEecCCCCCceEEEEEeecchhhHHH-
Q 010884 175 HDFRPSYRKLSSLRNYL--PDVPILALTATAAPKV-QKDVMES-LCLQ--NPLVLKSSFNRPNLFYEVRYKDLLDDAYA- 247 (498)
Q Consensus 175 ~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~~~-~~~i~~~-l~~~--~~~~~~~~~~r~ni~~~v~~~~~~~~~~~- 247 (498)
.+.--. .-+.+++-.. ..+++|+||||.++.- .+++... +... .|+.+......-...|........ ..+.
T Consensus 358 rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~l-r~ia~ 435 (1008)
T KOG0950|consen 358 RGAILE-LLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVL-REIAN 435 (1008)
T ss_pred cchHHH-HHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHH-HHhhh
Confidence 431100 0122222111 2366999999997642 2222221 1111 222222222222233333110000 0011
Q ss_pred ------------HHHHHHHh-c-CCccEEEEeCccchHHHHHHHHHhC--------------------------------
Q 010884 248 ------------DLCSVLKA-N-GDTCAIVYCLERTTCDELSAYLSAG-------------------------------- 281 (498)
Q Consensus 248 ------------~l~~~l~~-~-~~~~~IVf~~t~~~~~~l~~~L~~~-------------------------------- 281 (498)
.+..+..+ . .+.++||||++++.|+.+|..+...
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 11111111 1 2345999999999999998666431
Q ss_pred ------CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC----CCCHHHHHHHHhhcCC
Q 010884 282 ------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----PKSMEAFYQESGRAGR 351 (498)
Q Consensus 282 ------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~----p~s~~~y~Q~~GRagR 351 (498)
...++++|+|++.++|..+...|+.|.+.|++||+.+..|+|.|..|++|-.-. +.+..+|.|++|||||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 124688999999999999999999999999999999999999998888885432 3478999999999999
Q ss_pred CCC--CceEEEEEccchHHHHHHHHHhccc
Q 010884 352 DQL--PSKSLLYYGMDDRRRMEFILSKNQS 379 (498)
Q Consensus 352 ~g~--~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (498)
.|- .|.+++.+...+.++...++.....
T Consensus 596 ~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 596 TGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred cccccCcceEEEeeccchhHHHHHHhcccc
Confidence 985 6789999999999888888775443
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=3.4e-25 Score=224.85 Aligned_cols=315 Identities=20% Similarity=0.237 Sum_probs=212.7
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHH
Q 010884 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 115 (498)
+-|+|..+|..+-++.+|+|.|-|.+|||.++-.++ |....++|+-+|.+||-+|.++.|..---.+...++..
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDV--- 206 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDV--- 206 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecce---
Confidence 678999999999999999999999999998754332 44578999999999999999999887433344433322
Q ss_pred HHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc--cCCCChHHHHHHHHHHHhCC-
Q 010884 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLP- 192 (498)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~- 192 (498)
.-+|+..-|+.|.|++.+-. +....-...+..||+||+|-|-+ .|- -+.+-.-.+|
T Consensus 207 ----------TInP~ASCLVMTTEILRsML----YRGSEvmrEVaWVIFDEIHYMRDkERGV-------VWEETIIllP~ 265 (1041)
T KOG0948|consen 207 ----------TINPDASCLVMTTEILRSML----YRGSEVMREVAWVIFDEIHYMRDKERGV-------VWEETIILLPD 265 (1041)
T ss_pred ----------eeCCCCceeeeHHHHHHHHH----hccchHhheeeeEEeeeehhccccccce-------eeeeeEEeccc
Confidence 12355667777777654321 12223345589999999999865 221 1111111233
Q ss_pred CCCEEEEeecCChHHH-HHHHHHhCCCCCeEEecCCCCCce-EE-----------EEEeec-chhhHHHHH---------
Q 010884 193 DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNL-FY-----------EVRYKD-LLDDAYADL--------- 249 (498)
Q Consensus 193 ~~~~l~lSAT~~~~~~-~~i~~~l~~~~~~~~~~~~~r~ni-~~-----------~v~~~~-~~~~~~~~l--------- 249 (498)
++..++||||.++..+ .+++..+.-++..++-..+....+ +| .|..+. ..++.+...
T Consensus 266 ~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 266 NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 7889999999988653 334444544455444333322222 22 111110 111222221
Q ss_pred -----------------------------HHHHHhcCCccEEEEeCccchHHHHHHHHHhCCC-----------------
Q 010884 250 -----------------------------CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI----------------- 283 (498)
Q Consensus 250 -----------------------------~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~----------------- 283 (498)
...+-.....|+|||+-++++|+.+|-.+.+..+
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 2222223345799999999999999998876422
Q ss_pred ----------------------ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC----
Q 010884 284 ----------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---- 337 (498)
Q Consensus 284 ----------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~---- 337 (498)
.+..+|+||-+--++.+.=.|+.|-+++|+||..|++|+|.| .+.|++...-+
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTAVRKFDGK 504 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEeeccccCCc
Confidence 357899999999999999999999999999999999999999 56666555433
Q ss_pred -----CHHHHHHHHhhcCCCCC--CceEEEEEccc-hHHHHHHHHHhcc
Q 010884 338 -----SMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKNQ 378 (498)
Q Consensus 338 -----s~~~y~Q~~GRagR~g~--~~~~~~~~~~~-d~~~~~~~~~~~~ 378 (498)
|--.|+|++|||||.|. .|.++++++.. +....+.+++...
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~a 553 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSA 553 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCC
Confidence 67789999999999997 56777777643 4445556655433
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=9.9e-23 Score=216.55 Aligned_cols=323 Identities=20% Similarity=0.170 Sum_probs=220.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (498)
..+-++.+|.. +++.|.-.--.+..|+ ++.|+||.|||++|.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 72 rEaa~R~lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 72 REASKRVFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred HHHHHHHhCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 34455677875 4578865444444454 99999999999999999874 356699999999999988877665
Q ss_pred -cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc----
Q 010884 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS---- 172 (498)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~---- 172 (498)
+|+.+..+.++.....+...+ ..+|+|+||--+.-.-+...+. ...-...+.++||||||.++-
T Consensus 149 ~lGlsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEKKAAY--------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred hcCCeEEEecCCCCHHHHHhcC--------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 699998888777664443322 2789999998764322222211 111235588999999998742
Q ss_pred -------cCCCChHHHHHHHHHHHhCC--------------------CCC------------------------------
Q 010884 173 -------WGHDFRPSYRKLSSLRNYLP--------------------DVP------------------------------ 195 (498)
Q Consensus 173 -------~g~~fr~~~~~l~~l~~~~~--------------------~~~------------------------------ 195 (498)
....-...|..+..+...+. ...
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 11111122332221111110 011
Q ss_pred --------------------------------------------------------------------------------
Q 010884 196 -------------------------------------------------------------------------------- 195 (498)
Q Consensus 196 -------------------------------------------------------------------------------- 195 (498)
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence
Q ss_pred ------EEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEE---eecchhhHHHHHHHHHHh--cCCccEEEE
Q 010884 196 ------ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVY 264 (498)
Q Consensus 196 ------~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~---~~~~~~~~~~~l~~~l~~--~~~~~~IVf 264 (498)
+.+||+|+..+. ..+.+..++ .++..+.++|.+..... +. ....|+..+.+.+.. ..+.|+|||
T Consensus 381 Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkp~~R~d~~d~iy~-t~~~K~~Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEA-FEFQHIYGL---DTVVVPTNRPMVRKDMADLVYL-TADEKYQAIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HHhhhHhhcccCCChHHH-HHHHHHhCC---CEEECCCCCCccceeCCCcEEe-CHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 233333333221 112222221 12233444554432211 11 224566666665543 357899999
Q ss_pred eCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCC------------------
Q 010884 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------ 326 (498)
Q Consensus 265 ~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~------------------ 326 (498)
|+|++.++.++..|.+.|+++..+||++++.++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 456 t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 456 TVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred eCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 99999999999999999999999999999999999999999998 9999999999999751
Q ss_pred --------------c-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 327 --------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 327 --------------v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
| =+||-...+.|..---|-.|||||.|.||.+..|++.+|-
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2788899999999999999999999999999999998875
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.3e-22 Score=188.44 Aligned_cols=296 Identities=20% Similarity=0.275 Sum_probs=197.5
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHH-HHHHH--hHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe
Q 010884 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKS-MCYQI--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL 108 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKT-l~~~l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~ 108 (498)
+++|.|+.+-+.++ +.++.+++|-||+||| +.|+. .++..++.+.+.+|....+.+...+|+. .+.....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 68999998876654 5679999999999999 45553 4567889999999999999999999987 34566666
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (498)
++......+ +|-+++|..-+-++.+. ++++||||+|...--. | ...+..+..-
T Consensus 177 yg~S~~~fr-------------------~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~~~-d-~~L~~Av~~a- 229 (441)
T COG4098 177 YGDSDSYFR-------------------APLVVATTHQLLRFKQA-----FDLLIIDEVDAFPFSD-D-QSLQYAVKKA- 229 (441)
T ss_pred ecCCchhcc-------------------ccEEEEehHHHHHHHhh-----ccEEEEeccccccccC-C-HHHHHHHHHh-
Confidence 654433211 33366665544344332 7899999999864211 1 1112222222
Q ss_pred HhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC-----CCceEEEEEeec-chhhHH-HHHHHHHHhc--CCc
Q 010884 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-----RPNLFYEVRYKD-LLDDAY-ADLCSVLKAN--GDT 259 (498)
Q Consensus 189 ~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-----r~ni~~~v~~~~-~~~~~~-~~l~~~l~~~--~~~ 259 (498)
.-++-..|.||||++....+++... -..+..+..-++ .|...+.-.... ....++ ..|..+++.. .+.
T Consensus 230 -rk~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 230 -RKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred -hcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 2246779999999999887765431 111111111122 222111111111 001111 2456666543 457
Q ss_pred cEEEEeCccchHHHHHHHHHhC-C-CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCC-
Q 010884 260 CAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP- 336 (498)
Q Consensus 260 ~~IVf~~t~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p- 336 (498)
+++||+++.+..+++++.|++. + ...+..|+. ...|.+..++|++|++.+||+|..+++|+.+|+|++.+.-.--
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 8999999999999999999553 3 334677773 4678888999999999999999999999999999987754322
Q ss_pred -CCHHHHHHHHhhcCCCCC-CceEEEEEccc
Q 010884 337 -KSMEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (498)
Q Consensus 337 -~s~~~y~Q~~GRagR~g~-~~~~~~~~~~~ 365 (498)
.+-+..+|.+||+||.-. |.--++||...
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 588999999999999654 44455566554
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=8e-23 Score=218.97 Aligned_cols=300 Identities=19% Similarity=0.215 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcHHHHHHHHHHHHHH-cCCc----eeEec
Q 010884 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLS 109 (498)
Q Consensus 41 ~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~~~L~~q~~~~l~~-~gi~----~~~~~ 109 (498)
....+++.++.+++-+++.+|||+|||. ++|... ..+.+.+.-|.+-=+.....++.. +|.+ +.+..
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 4566778888888899999999999996 455432 245778888988555555555544 3332 22211
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhh-HHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~-~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (498)
.. ++.. .+..++-|+ |.|. +..+..-..+..+++|||||||.=+-- .||- +.-+..+.
T Consensus 131 Rf----------e~~~--s~~Trik~m------TdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~-tDil--Lgllk~~~ 189 (845)
T COG1643 131 RF----------ESKV--SPRTRIKVM------TDGILLREIQNDPLLSGYSVVIIDEAHERSLN-TDIL--LGLLKDLL 189 (845)
T ss_pred Ee----------eccC--CCCceeEEe------ccHHHHHHHhhCcccccCCEEEEcchhhhhHH-HHHH--HHHHHHHH
Confidence 10 0111 123455444 4443 334455566778999999999985421 1221 12233334
Q ss_pred HhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC-CCCCceEEEEEe-ecc-hhhHHHHHHHHHHhcCCccEEEE
Q 010884 189 NYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVY 264 (498)
Q Consensus 189 ~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~ni~~~v~~-~~~-~~~~~~~l~~~l~~~~~~~~IVf 264 (498)
...+ +.++|.||||+..+... +.++ ..|++...+ .....++|.... .+. ....+..........+.+.++||
T Consensus 190 ~~rr~DLKiIimSATld~~rfs---~~f~-~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 190 ARRRDDLKLIIMSATLDAERFS---AYFG-NAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred hhcCCCceEEEEecccCHHHHH---HHcC-CCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEE
Confidence 4444 69999999999887543 3222 234433322 223334442221 111 22233333333334567889999
Q ss_pred eCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC---
Q 010884 265 CLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--- 337 (498)
Q Consensus 265 ~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~--- 337 (498)
.+..++.+..++.|.+ ....+..+||.|+.+++..+++.-..|+-+||+||++++.+|-+|+|++||.-+.-+
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~ 345 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccc
Confidence 9999999999999998 347789999999999999888777777777999999999999999999999776543
Q ss_pred ---------------CHHHHHHHHhhcCCCCCCceEEEEEccchHH
Q 010884 338 ---------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (498)
Q Consensus 338 ---------------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~ 368 (498)
|-.+.-||.|||||.+ +|.|+-+|+.++..
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 7889999999999997 99999999987665
No 101
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=5.1e-22 Score=211.42 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc
Q 010884 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (498)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~ 320 (498)
..++..+.+-+.. ..+.|+||-|.|.+..+.++..|.+.|++...+++.-...+-.-+.++-+. -.|.|||+++|+
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGR 628 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccccC
Confidence 3556665554433 256789999999999999999999999999888887554444444333222 459999999999
Q ss_pred ccccC---Cc-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 321 GIDRK---DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 321 GiD~p---~v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
|.|+. .| =+||....|.|..---|-.||+||.|.+|.+..|++.+|.
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 99974 22 2788999999999999999999999999999999998874
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=7.6e-22 Score=210.34 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=113.7
Q ss_pred HHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccccc
Q 010884 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (498)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~Gi 322 (498)
.+..|.+.++. ..+.++||||+|++.++.+++.|.+.|+++..+||+++..+|..+++.|++|++.|||||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 34455544433 2456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeC-----CCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHH
Q 010884 323 DRKDVRLVCHFN-----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 323 D~p~v~~VI~~~-----~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
|+|++++||+++ .|.+...|+|++|||||. ..|.+++|++..+....+.+..
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999998 799999999999999998 5899999998776555544443
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.2e-22 Score=206.23 Aligned_cols=302 Identities=20% Similarity=0.242 Sum_probs=206.4
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcHHHHHHHHHHHHHH-----cCCceeEecC
Q 010884 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLSS 110 (498)
Q Consensus 42 ~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~~~L~~q~~~~l~~-----~gi~~~~~~~ 110 (498)
+-.+++.++.+++-+++.+.||+|||. |+|-+. ..|.+.+.-|.|--+...+.+... +|-.+.+-..
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR 132 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR 132 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE
Confidence 445678888888999999999999996 666543 456677777887555544444332 3333322110
Q ss_pred CCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHh
Q 010884 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (498)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~ 190 (498)
+.+.. ....++.|.|.-++. +.+.....+.+.++|||||||.-+-.. | -.+--|..+.+.
T Consensus 133 ----------Fed~t--s~~TrikymTDG~LL-----RE~l~Dp~LskYsvIIlDEAHERsl~T-D--iLlGlLKki~~~ 192 (674)
T KOG0922|consen 133 ----------FEDST--SKDTRIKYMTDGMLL-----REILKDPLLSKYSVIILDEAHERSLHT-D--ILLGLLKKILKK 192 (674)
T ss_pred ----------ecccC--CCceeEEEecchHHH-----HHHhcCCccccccEEEEechhhhhhHH-H--HHHHHHHHHHhc
Confidence 01111 124778777766553 333344456678999999999743210 1 011234455566
Q ss_pred CCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCC-ceEEEEE-eecchhhHHHHHHHHHHhcCCccEEEEeCcc
Q 010884 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVR-YKDLLDDAYADLCSVLKANGDTCAIVYCLER 268 (498)
Q Consensus 191 ~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-ni~~~v~-~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~ 268 (498)
.++..+|.+|||+..+....++. ..|++...+-.-| .+.|... ..+..+..+..+.++....+.+-++||....
T Consensus 193 R~~LklIimSATlda~kfS~yF~----~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFN----NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQ 268 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhc----CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCH
Confidence 67889999999998776554433 2344433332222 2233221 1223334455555665566777899999999
Q ss_pred chHHHHHHHHHhC----C--C--ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC-----
Q 010884 269 TTCDELSAYLSAG----G--I--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----- 335 (498)
Q Consensus 269 ~~~~~l~~~L~~~----g--~--~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~----- 335 (498)
++.+.+++.|.+. + . .+..+||.|+.+++..+...-..|.-+|++||++++..|-+++|++||.-+.
T Consensus 269 eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 9999999999874 1 1 2468999999999999888888899999999999999999999999996653
Q ss_pred -------------CCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHH
Q 010884 336 -------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (498)
Q Consensus 336 -------------p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~ 370 (498)
|-|.++-.||.|||||.| +|.|+-+|+.++...+
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhc
Confidence 338899999999999998 9999999999887544
No 104
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.2e-21 Score=207.02 Aligned_cols=321 Identities=21% Similarity=0.228 Sum_probs=235.2
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEec
Q 010884 38 QFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g----~dvlv~apTG~GKTl~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (498)
.+.+.|..|+..+... +..++.+.||||||-+|+- ..|..++.+||++|-++|..|.+.+++. +|.++..++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5778999999998765 5789999999999999863 3466788999999999999999999998 799999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCC-ChHHHHHHHHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKLSSLR 188 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~-fr~~~~~l~~l~ 188 (498)
|+.+..++...|.....+. .+++++|---+.+|- .++++|||||=|.-+-.-.+ .|..-+.+..++
T Consensus 278 S~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~Pf-----------~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 278 SGLSPGERYRVWRRARRGE--ARVVIGTRSALFLPF-----------KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ccCChHHHHHHHHHHhcCC--ceEEEEechhhcCch-----------hhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 9999999999999999887 899988877776653 34899999999986532221 233336788889
Q ss_pred HhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC---CCceEEEEEeec-------chhhHHHHHHHHHHhcCC
Q 010884 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKD-------LLDDAYADLCSVLKANGD 258 (498)
Q Consensus 189 ~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ni~~~v~~~~-------~~~~~~~~l~~~l~~~~~ 258 (498)
....++|+|+-|||++-+......+ +...-..+..-+. .|++.+.-.... .....++.+.+.+. .+
T Consensus 345 a~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~g 420 (730)
T COG1198 345 AKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE--RG 420 (730)
T ss_pred HHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh--cC
Confidence 9999999999999999887664421 1111111211122 333332222111 11223333333333 35
Q ss_pred ccEEEEeCcc------------------------------------------------------------chHHHHHHHH
Q 010884 259 TCAIVYCLER------------------------------------------------------------TTCDELSAYL 278 (498)
Q Consensus 259 ~~~IVf~~t~------------------------------------------------------------~~~~~l~~~L 278 (498)
.++|+|.|.| -.++++++.|
T Consensus 421 eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL 500 (730)
T COG1198 421 EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEEL 500 (730)
T ss_pred CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHH
Confidence 6678877666 3457777777
Q ss_pred HhC--CCceEeecCCCCHHH--HHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHHH
Q 010884 279 SAG--GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAF 342 (498)
Q Consensus 279 ~~~--g~~~~~~h~~l~~~~--R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~y 342 (498)
.+. +.++..+.++.+... -...+..|.+|+.+|||.|.++..|.|+|+|..|...+... ....+
T Consensus 501 ~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll 580 (730)
T COG1198 501 KRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLL 580 (730)
T ss_pred HHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHH
Confidence 764 667888888876533 46779999999999999999999999999999988776432 45567
Q ss_pred HHHHhhcCCCCCCceEEEEEccchHHHHHHHHH
Q 010884 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 343 ~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
.|-.|||||.+.+|..++-....|-..++.+..
T Consensus 581 ~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 581 MQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 899999999999998888765555444444433
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=2.7e-22 Score=218.32 Aligned_cols=313 Identities=21% Similarity=0.183 Sum_probs=196.7
Q ss_pred CCHHHHHHHHHHHcC---C-CEEEEcCCCchHHHHHHHhHhc-------CCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 010884 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g---~-dvlv~apTG~GKTl~~~l~~l~-------~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~ 107 (498)
.+++|..++..+... . .+++.||||+|||++.+.+++. ...+++.+.|++++++++.++++...-....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 478999999887754 4 6889999999999998887752 2578999999999999999999873221111
Q ss_pred ----ecCCCCHHHHHHHHH---HHhcCCCc-----ccEEEECcccccC----hhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 108 ----LSSTQTMQVKTKIYE---DLDSGKPS-----LRLLYVTPELTAT----PGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 108 ----~~~~~~~~~~~~~~~---~~~~~~~~-----~~~l~~tpe~v~t----~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
.++............ ........ +.+..++|..+.. +.....+..+. .+++|+||+|.+.
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~S~vIlDE~h~~~ 351 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLL----TSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHH----hhchhhccHHhhc
Confidence 122211111100000 00000001 1222222222111 11111111111 5689999999987
Q ss_pred ccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC----CCCCceEEEEEeecchhhHHH
Q 010884 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDDAYA 247 (498)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~ni~~~v~~~~~~~~~~~ 247 (498)
+.. --.....+..+... -+.++|++|||+++...+.+...+.-........+ .+.+.+.-..... .......
T Consensus 352 ~~~--~~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~ 427 (733)
T COG1203 352 DET--MLAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVD-VEDGPQE 427 (733)
T ss_pred ccc--hHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchh-hhhhhhH
Confidence 742 11112222222222 38899999999999998888877765443333222 1222222111111 0001000
Q ss_pred HHHHHH--HhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHH----cCCCeEEEEeCccccc
Q 010884 248 DLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMG 321 (498)
Q Consensus 248 ~l~~~l--~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~vlvaT~a~~~G 321 (498)
.+.... ....+.+++|.|||+..|.+++..|+..+..+..+|+.+..++|.+.++.+. .+...|+|||++.+.|
T Consensus 428 ~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 428 ELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 111111 1234678999999999999999999998878999999999999988888654 5778899999999999
Q ss_pred cccCCccEEEEeCCCCCHHHHHHHHhhcCCCC--CCceEEEEE
Q 010884 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYY 362 (498)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g--~~~~~~~~~ 362 (498)
+|+ +.+++|-= +..+.+.+||.||++|.| ..|..+++-
T Consensus 508 vDi-dfd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~ 547 (733)
T COG1203 508 VDI-DFDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYN 547 (733)
T ss_pred ecc-ccCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEee
Confidence 998 57777644 445999999999999999 456666653
No 106
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.90 E-value=2.3e-22 Score=186.67 Aligned_cols=182 Identities=19% Similarity=0.216 Sum_probs=136.3
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc--------CCCeEEEeCcHH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLI 88 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~--------~~~~~lvl~P~~ 88 (498)
|..+++.+.+.+.|.+ +|+.+|+++|.++++.+.+|+++++.+|||+|||++|++|++. .+++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 4567788899999998 8999999999999999999999999999999999999998863 245799999999
Q ss_pred HHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEE
Q 010884 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (498)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (498)
+|+.|+...++.+ ++.+..+.++.........+. .+.+++++||+.+..... ........++++|+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~~l~----~~~~~~~~l~~lIv 149 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLLDLLE----RGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHHHHH----cCCCChhhCCEEEE
Confidence 9999999988876 566666666665544332221 236788888876533111 11123445899999
Q ss_pred eccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHH
Q 010884 165 DEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 214 (498)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~ 214 (498)
||+|.+.+++ |...+..+ ...+ ++.+++++|||+++.+...+...
T Consensus 150 DE~h~~~~~~--~~~~~~~~---~~~l~~~~~~~~~SAT~~~~~~~~~~~~ 195 (203)
T cd00268 150 DEADRMLDMG--FEDQIREI---LKLLPKDRQTLLFSATMPKEVRDLARKF 195 (203)
T ss_pred eChHHhhccC--hHHHHHHH---HHhCCcccEEEEEeccCCHHHHHHHHHH
Confidence 9999998655 55444443 3333 37899999999998876554443
No 107
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=3.2e-21 Score=202.91 Aligned_cols=292 Identities=20% Similarity=0.265 Sum_probs=204.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
+++.+.+++..|+ .|+..|.--...++.|+++-+.||||.|||.--++.++ .+++++++|+||..|+.|..+++.+
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 4455666666787 68899999999999999999999999999964444333 3568999999999999999999998
Q ss_pred cC-----CceeE-ecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccC
Q 010884 101 KG-----IAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (498)
Q Consensus 101 ~g-----i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (498)
++ ..+.. .++..+...+....+.+.++. ++++++|. .|+..-......-++++|+||++|.++.-+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIlitTs------~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDILITTS------QFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEEEEeH------HHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 64 22222 566678888889999999886 77766554 444333332333459999999999885422
Q ss_pred CC---------ChH--------------HH------HHHHHHHH---------hCCCCCEEEEeecCChHH-H-HHHHHH
Q 010884 175 HD---------FRP--------------SY------RKLSSLRN---------YLPDVPILALTATAAPKV-Q-KDVMES 214 (498)
Q Consensus 175 ~~---------fr~--------------~~------~~l~~l~~---------~~~~~~~l~lSAT~~~~~-~-~~i~~~ 214 (498)
.. |-. .+ .++.+... ......++..|||..+.- + ..+...
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 10 110 00 11111111 112356899999987653 2 233344
Q ss_pred hCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCc---cchHHHHHHHHHhCCCceEeecCC
Q 010884 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (498)
Q Consensus 215 l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t---~~~~~~l~~~L~~~g~~~~~~h~~ 291 (498)
|++.... ......|+.-..... .....+.++++..+.+ +|||++. ++.+++++++|+..|+++..+|++
T Consensus 300 lgFevG~---~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~G-gLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEVGS---GGEGLRNIVDIYVES----ESLEKVVELVKKLGDG-GLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCccCc---cchhhhheeeeeccC----ccHHHHHHHHHHhCCC-eEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 4443211 112223443332222 4456677788877664 8999999 899999999999999999999983
Q ss_pred CCHHHHHHHHHHHHcCCCeEEEEe----CccccccccCC-ccEEEEeCCCC
Q 010884 292 LNDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (498)
Q Consensus 292 l~~~~R~~~~~~f~~g~~~vlvaT----~a~~~GiD~p~-v~~VI~~~~p~ 337 (498)
- ...++.|..|++++||.. .++-+|||+|. ++++|.|+.|+
T Consensus 372 ~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 K-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 2 567899999999999885 46889999995 89999999993
No 108
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.1e-20 Score=201.82 Aligned_cols=124 Identities=23% Similarity=0.254 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc
Q 010884 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (498)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~ 320 (498)
..|+..|.+.+... .+.|+||||+|++.++.|+..|.+.|+++..+|+ .+.+|+..+..|+.+...|+|||+++|+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 46788888887543 6789999999999999999999999999999997 6889999999999999999999999999
Q ss_pred ccccC---CccE-----EEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHH
Q 010884 321 GIDRK---DVRL-----VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (498)
Q Consensus 321 GiD~p---~v~~-----VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~ 368 (498)
|+|++ .|.. ||++..|.|...|.|++||+||.|.+|.++.|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 5644 499999999999999999999999999999999987754
No 109
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.88 E-value=4.3e-21 Score=195.99 Aligned_cols=308 Identities=19% Similarity=0.209 Sum_probs=226.7
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHH--HHHhHh----cCCCeEEEeCcHHHHHHHHHHHHHHcC--Cc
Q 010884 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMC--YQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKG--IA 104 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~--~~l~~l----~~~~~~lvl~P~~~L~~q~~~~l~~~g--i~ 104 (498)
-.+|++|.+.++.+. .|-++|+.-..|-|||+- .++.-+ -..|+.||++|...| ..|+++++++. ++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 369999999998765 466889999999999952 122222 237899999999888 68999999974 44
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHH
Q 010884 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (498)
+..+.+ ....+.....++.... .++++++|.|++.... ..|.+ -.+.++||||||++.... ..|
T Consensus 245 ~~~~~G--dk~eR~~~~r~~~~~~-~fdV~iTsYEi~i~dk--~~lk~----~~W~ylvIDEaHRiKN~~-------s~L 308 (971)
T KOG0385|consen 245 VVVYHG--DKEERAALRRDIMLPG-RFDVCITSYEIAIKDK--SFLKK----FNWRYLVIDEAHRIKNEK-------SKL 308 (971)
T ss_pred eEEEeC--CHHHHHHHHHHhhccC-CCceEeehHHHHHhhH--HHHhc----CCceEEEechhhhhcchh-------hHH
Confidence 555544 4466666666655443 5899999999876542 12222 238999999999998754 466
Q ss_pred HHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC------CCC-----------------------------
Q 010884 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNR----------------------------- 229 (498)
Q Consensus 185 ~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~r----------------------------- 229 (498)
....+.+...-.+++|+||-.+....++..|++--|.++... |+.
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 677777766678999999999888888888887777666220 000
Q ss_pred -----CceEEEEEe-ecch-----------------------h-------------------------------------
Q 010884 230 -----PNLFYEVRY-KDLL-----------------------D------------------------------------- 243 (498)
Q Consensus 230 -----~ni~~~v~~-~~~~-----------------------~------------------------------------- 243 (498)
|...+.+.. .... .
T Consensus 389 e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 389 EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 000000000 0000 0
Q ss_pred --hHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcC---CCeEEEEeC
Q 010884 244 --DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATV 316 (498)
Q Consensus 244 --~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~vlvaT~ 316 (498)
.|+..|..+|.. ..+.+++||.......+-|..++.-+|+..+.+.|.++.++|...++.|... ..-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 111122222221 2356799999999999999999999999999999999999999999999843 345789999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
|.|.|||+...++||.||-.+++..-+|..-||.|-|+...+++|
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 999999999999999999999999999999999999998766655
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=1.3e-19 Score=194.67 Aligned_cols=108 Identities=24% Similarity=0.362 Sum_probs=102.1
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC-
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI- 335 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~- 335 (498)
.+.++||||+|++.++.+++.|...|+++..+||+++..+|..+++.|+.|++.|+|||+.+++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCCHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 336 ----PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 336 ----p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
|.+...|+||+||+||. ..|.+++|++..
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 78999999999999996 689999999853
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.7e-19 Score=183.93 Aligned_cols=324 Identities=19% Similarity=0.170 Sum_probs=225.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 010884 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (498)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (498)
+..+.++.+|.. +++.|.-+.-.++.|+ ++.|.||.|||++..+|++. .+..+.|++|+.-|+.+-.+.+..
T Consensus 67 vREa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 345556677876 5699998888888886 88999999999999988864 577899999999999998888765
Q ss_pred --cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc---
Q 010884 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (498)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (498)
+|+.+.++.+......+...+. .+|.|+|.--+.-.-+...+. .......+.+.||||++.++=
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA 215 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA 215 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc
Confidence 6999999988888887776663 689999887655433333331 112234588999999998731
Q ss_pred --------cCCCChHHHHHHHHHHHhCC---------CC-----------------------------------------
Q 010884 173 --------WGHDFRPSYRKLSSLRNYLP---------DV----------------------------------------- 194 (498)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~---------~~----------------------------------------- 194 (498)
....- ..|..+..+...+. ..
T Consensus 216 rtPLiISg~~~~~-~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A 294 (764)
T PRK12326 216 LVPLVLAGSTPGE-APRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHA 294 (764)
T ss_pred cCceeeeCCCcch-hHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHH
Confidence 00000 12222222211110 00
Q ss_pred ---------------------------------------------------------------------CEEEEeecCCh
Q 010884 195 ---------------------------------------------------------------------PILALTATAAP 205 (498)
Q Consensus 195 ---------------------------------------------------------------------~~l~lSAT~~~ 205 (498)
.+.+||+|+..
T Consensus 295 ~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t 374 (764)
T PRK12326 295 HALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVA 374 (764)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChh
Confidence 15566666643
Q ss_pred HHHHHHHHHhCCCCCeEEecCCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHh
Q 010884 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA 280 (498)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~ 280 (498)
.. ..+.+..++. ++..+.++|.+.... .+. ....++..+.+.+.. ..+.|+||.+.|.+..+.++..|.+
T Consensus 375 ~~-~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~ 449 (764)
T PRK12326 375 AG-EQLRQFYDLG---VSVIPPNKPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRA 449 (764)
T ss_pred HH-HHHHHHhCCc---EEECCCCCCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 32 2334433332 334455566554321 122 224566666665533 3578999999999999999999999
Q ss_pred CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC----------Cc-----cEEEEeCCCCCHHHHHHH
Q 010884 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK----------DV-----RLVCHFNIPKSMEAFYQE 345 (498)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p----------~v-----~~VI~~~~p~s~~~y~Q~ 345 (498)
.|++...+++.-...+-..+.+.=+. -.|.|||+++|+|.|+. .| =+||-...|.|..---|-
T Consensus 450 ~gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QL 527 (764)
T PRK12326 450 AGVPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQL 527 (764)
T ss_pred CCCcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHH
Confidence 99999999987555443333333223 35999999999999975 22 279999999999999999
Q ss_pred HhhcCCCCCCceEEEEEccchHH
Q 010884 346 SGRAGRDQLPSKSLLYYGMDDRR 368 (498)
Q Consensus 346 ~GRagR~g~~~~~~~~~~~~d~~ 368 (498)
.||+||.|.||.+..|++.+|--
T Consensus 528 rGRaGRQGDpGss~f~lSleDdl 550 (764)
T PRK12326 528 RGRAGRQGDPGSSVFFVSLEDDV 550 (764)
T ss_pred hcccccCCCCCceeEEEEcchhH
Confidence 99999999999999999988743
No 112
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2.9e-20 Score=187.12 Aligned_cols=312 Identities=17% Similarity=0.162 Sum_probs=204.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCe-EEEeCcHHHHHHHHHHHHHH-
Q 010884 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGI-VLVVSPLIALMENQVIGLKE- 100 (498)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~-~lvl~P~~~L~~q~~~~l~~- 100 (498)
.+++.-..-..+++-.+.+.++...+-+++.+.||||||. |+|... ..++ +-+--|.+--+.....+...
T Consensus 256 ~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 256 SIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHH
Confidence 3333323334567788899999999999999999999996 777653 3444 66666888766666555443
Q ss_pred cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHH
Q 010884 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (498)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~ 180 (498)
+|+....-.+..- -+++..+. ...+-|.|.-++ +..+..-..+...++|||||||.-.-- ---.
T Consensus 334 MgvkLG~eVGYsI------RFEdcTSe--kTvlKYMTDGmL-----lREfL~epdLasYSViiiDEAHERTL~---TDIL 397 (902)
T KOG0923|consen 334 MGVKLGHEVGYSI------RFEDCTSE--KTVLKYMTDGML-----LREFLSEPDLASYSVIIVDEAHERTLH---TDIL 397 (902)
T ss_pred hCcccccccceEE------EeccccCc--ceeeeeecchhH-----HHHHhccccccceeEEEeehhhhhhhh---hhHH
Confidence 4443211111000 01111121 134444444333 334445555667899999999973210 1111
Q ss_pred HHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeec---chhhHHHHHHHHHHhcC
Q 010884 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD---LLDDAYADLCSVLKANG 257 (498)
Q Consensus 181 ~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~---~~~~~~~~l~~~l~~~~ 257 (498)
+.-+..+.+..|+..+++.|||+..+-...+ +.+..++..+-.|-.+...+...+ ..+..+..+.++....+
T Consensus 398 fgLvKDIar~RpdLKllIsSAT~DAekFS~f-----FDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp 472 (902)
T KOG0923|consen 398 FGLVKDIARFRPDLKLLISSATMDAEKFSAF-----FDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQP 472 (902)
T ss_pred HHHHHHHHhhCCcceEEeeccccCHHHHHHh-----ccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccC
Confidence 2344556666689999999999987754433 234445554444433333222222 22223333334334456
Q ss_pred CccEEEEeCccchHHHHHHHHHh----C-----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCcc
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----G-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~ 328 (498)
.+-+|||....++.+...+.|.+ . .+-+.++|++|+...+..|++.--.|--+|++||+++...|.+++|.
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~ 552 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIK 552 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeE
Confidence 67799999888877776666654 2 34578999999999999999888899999999999999999999999
Q ss_pred EEEEeCCC------------------CCHHHHHHHHhhcCCCCCCceEEEEEcc
Q 010884 329 LVCHFNIP------------------KSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 329 ~VI~~~~p------------------~s~~~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
+||.-+.. -|..+-.||.|||||.| ||.|+-+|+.
T Consensus 553 yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 553 YVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred EEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 99966533 37788899999999999 9999999984
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=2.4e-19 Score=193.34 Aligned_cols=313 Identities=17% Similarity=0.142 Sum_probs=186.4
Q ss_pred ChhHHHHHHHHHhcCC---------CCCCHHHHHHHHHHH----c------CCCEEEEcCCCchHHHHHHHhH--h---c
Q 010884 21 HEKEALVKLLRWHFGH---------AQFRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPA--L---A 76 (498)
Q Consensus 21 ~~~~~~~~~l~~~fg~---------~~~~~~Q~~~i~~i~----~------g~dvlv~apTG~GKTl~~~l~~--l---~ 76 (498)
...+.+++.++...=| .-+|++|.+|+..+. . .+..++++|||||||++....+ + .
T Consensus 212 ~~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~ 291 (667)
T TIGR00348 212 LKKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL 291 (667)
T ss_pred cCHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc
Confidence 3445666666541111 126789999998764 2 2468999999999998765332 2 2
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~ 156 (498)
..+++|||+|+.+|..|+.+.+..++..... ...+... +...+.. .+..++++|...+... ....+......
T Consensus 292 ~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~--~~~s~~~---L~~~l~~--~~~~iivtTiQk~~~~-~~~~~~~~~~~ 363 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQLMKEFQSLQKDCAE--RIESIAE---LKRLLEK--DDGGIIITTIQKFDKK-LKEEEEKFPVD 363 (667)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhhCCCCCc--ccCCHHH---HHHHHhC--CCCCEEEEEhHHhhhh-HhhhhhccCCC
Confidence 4578999999999999999999998753211 1111111 1122222 2357888887766541 01111111111
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCC-CCCeEEe--------cCC
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLK--------SSF 227 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~-~~~~~~~--------~~~ 227 (498)
..-.+||+||||+... | .....++..+|+..+++|||||-......-...++. ....+.. .++
T Consensus 364 ~~~~lvIvDEaHrs~~-~-------~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~ 435 (667)
T TIGR00348 364 RKEVVVIFDEAHRSQY-G-------ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGL 435 (667)
T ss_pred CCCEEEEEEcCccccc-h-------HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCC
Confidence 1112899999998532 2 112335578899999999999964311111111211 0111111 111
Q ss_pred CCCceEEEEEeecc-h-----h----------------------------------------hHHHHHHHHHHh---cCC
Q 010884 228 NRPNLFYEVRYKDL-L-----D----------------------------------------DAYADLCSVLKA---NGD 258 (498)
Q Consensus 228 ~r~ni~~~v~~~~~-~-----~----------------------------------------~~~~~l~~~l~~---~~~ 258 (498)
..| +.|..+.... . + .....+.+.+.. ..+
T Consensus 436 ~~~-i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~ 514 (667)
T TIGR00348 436 TVK-IDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFK 514 (667)
T ss_pred eee-EEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhccc
Confidence 111 2222111100 0 0 000011111111 124
Q ss_pred ccEEEEeCccchHHHHHHHHHhC-----CCceEeecCCCCHH---------------------HHHHHHHHHHc-CCCeE
Q 010884 259 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQV 311 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~v 311 (498)
.+++|+|.++..|..+++.|.+. +..++.+++..+.. ....++++|++ +.++|
T Consensus 515 ~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~i 594 (667)
T TIGR00348 515 FKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKL 594 (667)
T ss_pred CceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceE
Confidence 78999999999999999998764 34556676654332 22468888975 68899
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCC
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR 351 (498)
||+++++..|+|.|.+.+++...+-++. .++|.+||+.|
T Consensus 595 lIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 595 LIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred EEEEcccccccCCCccceEEEecccccc-HHHHHHHHhcc
Confidence 9999999999999999999988766654 58999999999
No 114
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.85 E-value=7.4e-21 Score=171.09 Aligned_cols=156 Identities=30% Similarity=0.399 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---C--CCeEEEeCcHHHHHHHHHHHHHHcCC----ceeEecC
Q 010884 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKGI----AGEFLSS 110 (498)
Q Consensus 40 ~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~--~~~~lvl~P~~~L~~q~~~~l~~~gi----~~~~~~~ 110 (498)
+|+|.++++.+.+|+++++.||||+|||++|+++++. . ...+++++|+++|++|+...+..++. ....+..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999988864 2 34999999999999999999998643 5666666
Q ss_pred CCCHH-HHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 010884 111 TQTMQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (498)
Q Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (498)
+.... ...... . ...+++++||+.+...... ... ....+++|||||+|.+..|+ ++..+..+.....
T Consensus 81 ~~~~~~~~~~~~----~--~~~~ilv~T~~~l~~~~~~---~~~-~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 81 GQSISEDQREVL----S--NQADILVTTPEQLLDLISN---GKI-NISRLSLIVIDEAHHLSDET--FRAMLKSILRRLK 148 (169)
T ss_dssp TSCHHHHHHHHH----H--TTSSEEEEEHHHHHHHHHT---TSS-TGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSH
T ss_pred cccccccccccc----c--ccccccccCcchhhccccc---ccc-ccccceeeccCccccccccc--HHHHHHHHHHHhc
Confidence 66543 222222 1 1378888888875421110 111 33448999999999999984 7777777776666
Q ss_pred hCCCCCEEEEeecCChHH
Q 010884 190 YLPDVPILALTATAAPKV 207 (498)
Q Consensus 190 ~~~~~~~l~lSAT~~~~~ 207 (498)
..++.+++++|||+++.+
T Consensus 149 ~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TTTTSEEEEEESSSTHHH
T ss_pred CCCCCcEEEEeeCCChhH
Confidence 666899999999999444
No 115
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=188.59 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHH--HHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCC
Q 010884 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~--~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (498)
+-.||.+.+..+-.+..++++|||.+|||.+ |.+-... ..+.+|++.|+.+|++|........- ....+..+.+
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF-~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARF-DTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhh-ccCccccchh
Confidence 4469999999999999999999999999964 2333333 36899999999999999877766531 1112222222
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccc----cChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v----~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (498)
.. ....++........+++++.||.+ .+|.... ....+++++|+||+|++.+...+ .-+..+.-
T Consensus 591 l~--g~ltqEYsinp~nCQVLITvPecleslLlspp~~q-----~~cerIRyiIfDEVH~iG~~ed~-----l~~Eqll~ 658 (1330)
T KOG0949|consen 591 LL--GDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQ-----KFCERIRYIIFDEVHLIGNEEDG-----LLWEQLLL 658 (1330)
T ss_pred hH--hhhhHHhcCCchhceEEEEchHHHHHHhcCchhhh-----hhhhcceEEEechhhhccccccc-----hHHHHHHH
Confidence 11 112223333334689999999954 3322111 12334899999999999774322 11122222
Q ss_pred hCCCCCEEEEeecCChH
Q 010884 190 YLPDVPILALTATAAPK 206 (498)
Q Consensus 190 ~~~~~~~l~lSAT~~~~ 206 (498)
+-.+|++++|||..+.
T Consensus 659 -li~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 -LIPCPFLVLSATIGNP 674 (1330)
T ss_pred -hcCCCeeEEecccCCH
Confidence 2368899999998653
No 116
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.1e-19 Score=180.01 Aligned_cols=336 Identities=16% Similarity=0.115 Sum_probs=221.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh-----cCCCeEEEeCcHHHHHHHHHHHHHH-
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKE- 100 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l-----~~~~~~lvl~P~~~L~~q~~~~l~~- 100 (498)
...++. .-.+++..+|.++|+.+.+|+.+++.-.|.+||++||++.+. ......++++|+.++++++.+.+.-
T Consensus 276 ~~~~~~-~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 276 RSLLNK-NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HHHHhc-ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEE
Confidence 333443 456789999999999999999999999999999999997664 2456789999999999887554321
Q ss_pred ------cCCceeEecCC-CCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 010884 101 ------KGIAGEFLSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 101 ------~gi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (498)
+.- +..-.+. .+..... .+ ++ -..+++|..|.++.|..+-+.+...+..-.+.++++||+|...-.
T Consensus 355 ~~~I~~~K~-A~V~~~D~~sE~~~~-A~--~R---~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 355 VEVIKARKS-AYVEMSDKLSETTKS-AL--KR---IGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred EEehhhhhc-ceeecccCCCchhHH-HH--Hh---cCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 111 1111111 1111111 11 11 137899999988766554433322222222557899999986531
Q ss_pred -CCCChHHHHHHHHHHHhC---CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecc--------
Q 010884 174 -GHDFRPSYRKLSSLRNYL---PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-------- 241 (498)
Q Consensus 174 -g~~fr~~~~~l~~l~~~~---~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~-------- 241 (498)
|.--...++.|..+..-+ .+.+++-.+||.-..++. .....++.....+...-....-..-|.+.+.
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhh
Confidence 111122234454444433 377888888888776643 3444556555444432222222222222211
Q ss_pred hhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHh----CCC----ceEeecCCCCHHHHHHHHHHHHcCCCeE
Q 010884 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQV 311 (498)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (498)
...++.....++.+ ..+-++|-||.+|+-|+.+-...++ -|- .+..|.||-..++|..+......|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 12233333333322 1356799999999999877655443 221 2467999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEc--cchHHHHH
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRME 371 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~--~~d~~~~~ 371 (498)
+|||+|++.|||+...+.|++.++|.|+.++.|..|||||.++++.++.... +-|...+.
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhc
Confidence 9999999999999999999999999999999999999999999887665543 44544443
No 117
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.83 E-value=2.7e-18 Score=190.76 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=110.2
Q ss_pred CCEEEEeecCChH-HHHHHHHHhCCCCCeE--E-ecCCC-CCceEEEEEe-ec-----chhhHHHH----HHHHHHhcCC
Q 010884 194 VPILALTATAAPK-VQKDVMESLCLQNPLV--L-KSSFN-RPNLFYEVRY-KD-----LLDDAYAD----LCSVLKANGD 258 (498)
Q Consensus 194 ~~~l~lSAT~~~~-~~~~i~~~l~~~~~~~--~-~~~~~-r~ni~~~v~~-~~-----~~~~~~~~----l~~~l~~~~~ 258 (498)
.++|++|||++.. ....+.+.+|+.+... + ..+|+ ..+....+.. .. ..+..... |.+++.. .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 3589999999743 3456677888865432 2 23344 2232222211 10 11122223 3333333 34
Q ss_pred ccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCcc--EEEE
Q 010884 259 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCH 332 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~--~VI~ 332 (498)
++++||++|.+..+.++..|.. .++. .+..+.. ..|..++++|++++..||++|..|++|||+|+.. .||.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 6799999999999999999975 2333 3333333 5789999999999999999999999999999865 6777
Q ss_pred eCCCC------------------------------CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 333 FNIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 333 ~~~p~------------------------------s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
..+|. .+..+.|.+||.-|.....-++++++..
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 88774 1123588999999987655566666543
No 118
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7e-20 Score=187.56 Aligned_cols=301 Identities=17% Similarity=0.211 Sum_probs=195.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-----------CCCeEEEeCcHHHHHHH----HHHHHHHcCCceeEe
Q 010884 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVLVVSPLIALMEN----QVIGLKEKGIAGEFL 108 (498)
Q Consensus 44 ~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-----------~~~~~lvl~P~~~L~~q----~~~~l~~~gi~~~~~ 108 (498)
++++++|..+--||+++.||+|||. |+|.+. .++.+-|--|.|--+.. ...+|..+|-.+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 4567778777789999999999996 566542 14566677787754333 333343334333332
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (498)
....+ ...++.+|.++|.-++ +..+..-.-+.+.+.|||||||.-+-...-.-..+.++..|+
T Consensus 340 IRfd~------------ti~e~T~IkFMTDGVL-----LrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 340 IRFDG------------TIGEDTSIKFMTDGVL-----LREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred EEecc------------ccCCCceeEEecchHH-----HHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 21100 1123355655554443 334444444566899999999985542211122233444555
Q ss_pred HhCC-------CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEee---cchhhHHHHHHHHHHhcCC
Q 010884 189 NYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGD 258 (498)
Q Consensus 189 ~~~~-------~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~---~~~~~~~~~l~~~l~~~~~ 258 (498)
..+. ...+|+||||+.-.....-...+.+..| ++......-.+.+.+... +...+.+...+.+.+..+.
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 5442 3568999999866544322333334444 443333222222222222 3345667777778888899
Q ss_pred ccEEEEeCccchHHHHHHHHHhC-----C-C-------------------------------------------------
Q 010884 259 TCAIVYCLERTTCDELSAYLSAG-----G-I------------------------------------------------- 283 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~-----g-~------------------------------------------------- 283 (498)
+.++||+-..+++++|.+.|++. + .
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999863 0 0
Q ss_pred --------------------------------------------ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc
Q 010884 284 --------------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (498)
Q Consensus 284 --------------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~ 319 (498)
-|..+++-|+.+++..++..--.|.--++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 135567777788888887777788888999999999
Q ss_pred cccccCCccEEEEeCCCC------------------CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 320 MGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
..+.+|+|++||..+.-+ |-.+--||+|||||.| +|.|+-+|+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999776443 4555689999999998 99999999854
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.6e-18 Score=169.00 Aligned_cols=164 Identities=21% Similarity=0.317 Sum_probs=123.0
Q ss_pred CCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEee-cchhhHHHHHHHHHHhcCCccEEEEeCccchHH
Q 010884 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (498)
Q Consensus 194 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~ 272 (498)
.|++.+|||+.+.-...-.. ..-.-++-..+.-.|.+ .++.. ...++.+..+....+. +.+++|-+-|++.|+
T Consensus 387 ~q~i~VSATPg~~E~e~s~~--~vveQiIRPTGLlDP~i--evRp~~~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmAE 460 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGG--NVVEQIIRPTGLLDPEI--EVRPTKGQVDDLLSEIRKRVAK--NERVLVTTLTKKMAE 460 (663)
T ss_pred CCEEEEECCCChHHHHhccC--ceeEEeecCCCCCCCce--eeecCCCcHHHHHHHHHHHHhc--CCeEEEEeehHHHHH
Confidence 46999999998764331100 00000111112222322 33332 2224444444444433 578999999999999
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCC-----CCHHHHHHHHh
Q 010884 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQESG 347 (498)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p-----~s~~~y~Q~~G 347 (498)
.|.++|.+.|+++..+|++...-+|.+++..++.|.+.|||.-+.+-.|+|+|.|.+|..+|.. .|-.+.+|-+|
T Consensus 461 dLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIG 540 (663)
T COG0556 461 DLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIG 540 (663)
T ss_pred HHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999854 58999999999
Q ss_pred hcCCCCCCceEEEEEcc
Q 010884 348 RAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 348 RagR~g~~~~~~~~~~~ 364 (498)
||.|.- .|.+++|.+.
T Consensus 541 RAARN~-~GkvIlYAD~ 556 (663)
T COG0556 541 RAARNV-NGKVILYADK 556 (663)
T ss_pred HHhhcc-CCeEEEEchh
Confidence 999974 7888887654
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=2.2e-20 Score=193.95 Aligned_cols=324 Identities=20% Similarity=0.219 Sum_probs=191.1
Q ss_pred CcccccccccccCCCCChhHHHH-HHHHH--hcCCCCCCHHHHHHHHHHH----cCC-CEEEEcCCCchHHHHHH--HhH
Q 010884 5 PLAMQSTSQTQKNKPLHEKEALV-KLLRW--HFGHAQFRDKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQ--IPA 74 (498)
Q Consensus 5 ~~p~~~~~~~~~~~~~~~~~~~~-~~l~~--~fg~~~~~~~Q~~~i~~i~----~g~-dvlv~apTG~GKTl~~~--l~~ 74 (498)
|.|++++.+...++-+....... ..+.. .++-..+|.+|..||..+. +|+ .++++|.||+|||.++. +-.
T Consensus 129 pr~~e~f~~~~~le~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~r 208 (875)
T COG4096 129 PRPVEGFYSQEELEGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDR 208 (875)
T ss_pred CcchhhccCHHHHHHHhccccccccccccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHH
Confidence 67777776665554433322222 11111 1123458999999997655 443 69999999999995432 233
Q ss_pred hc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHH-HH
Q 010884 75 LA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KL 150 (498)
Q Consensus 75 l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~-~l 150 (498)
|. ..+++|+++-+++|+.|....+..+-......+.... ..+..+.++.+.|...+....... .-
T Consensus 209 L~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~-----------~~~~~s~~i~lsTyqt~~~~~~~~~~~ 277 (875)
T COG4096 209 LIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIED-----------KKGDTSSEIYLSTYQTMTGRIEQKEDE 277 (875)
T ss_pred HHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeec-----------ccCCcceeEEEeehHHHHhhhhccccc
Confidence 43 3578999999999999999888885433222221111 111124677776665443221111 11
Q ss_pred HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCe---------
Q 010884 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL--------- 221 (498)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~--------- 221 (498)
......+.+++|||||||+= .|.+...+...+... .+++|||+......+-...+. ..|.
T Consensus 278 ~~~f~~g~FDlIvIDEaHRg---------i~~~~~~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~-g~Pt~~YsleeAV 346 (875)
T COG4096 278 YRRFGPGFFDLIVIDEAHRG---------IYSEWSSILDYFDAA-TQGLTATPKETIDRSTYGFFN-GEPTYAYSLEEAV 346 (875)
T ss_pred cccCCCCceeEEEechhhhh---------HHhhhHHHHHHHHHH-HHhhccCcccccccccccccC-CCcceeecHHHHh
Confidence 11223345899999999963 234444444444333 345699987744332222221 1111
Q ss_pred ---------E--EecCCCCCceEE---------------------EEEe-------ecchhhHHHHHHHHHHh--cC--C
Q 010884 222 ---------V--LKSSFNRPNLFY---------------------EVRY-------KDLLDDAYADLCSVLKA--NG--D 258 (498)
Q Consensus 222 ---------~--~~~~~~r~ni~~---------------------~v~~-------~~~~~~~~~~l~~~l~~--~~--~ 258 (498)
+ +...+.+.-+.+ .... ....+.....+.+.++. .+ .
T Consensus 347 ~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~ 426 (875)
T COG4096 347 EDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEI 426 (875)
T ss_pred hccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCcc
Confidence 1 111111110100 0000 00001122334455555 33 4
Q ss_pred ccEEEEeCccchHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHHc--CCCeEEEEeCccccccccCCccEEE
Q 010884 259 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVC 331 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~vlvaT~a~~~GiD~p~v~~VI 331 (498)
+++||||.+..+|+.+...|... |--+..+.|+-...+ ..+..|.. .-.+|.|+.+++..|||+|.|..++
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 68999999999999999999874 333556666554333 33556654 3356889999999999999999999
Q ss_pred EeCCCCCHHHHHHHHhhcCCC
Q 010884 332 HFNIPKSMEAFYQESGRAGRD 352 (498)
Q Consensus 332 ~~~~p~s~~~y~Q~~GRagR~ 352 (498)
.+..-.|...|.|++||+-|.
T Consensus 505 F~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999993
No 121
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.6e-19 Score=180.58 Aligned_cols=302 Identities=16% Similarity=0.174 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh------cCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecCCCC
Q 010884 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQT 113 (498)
Q Consensus 41 ~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l------~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~ 113 (498)
..+.+.+.-+..++-+++++.||||||. |+|.. ...|.+-+--|.+.-+...+.+... +|.....-.+.
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY-- 434 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY-- 434 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce--
Confidence 5677788888888889999999999996 45442 2467777777998877777776654 43321111000
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCC
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 193 (498)
.. -+++... +...|-|+|.-++....+. -..+.+.+.||+||||.-+-- -| -.+--+..+.....+
T Consensus 435 -sI---RFEdvT~--~~T~IkymTDGiLLrEsL~-----d~~L~kYSviImDEAHERslN-tD--ilfGllk~~larRrd 500 (1042)
T KOG0924|consen 435 -SI---RFEDVTS--EDTKIKYMTDGILLRESLK-----DRDLDKYSVIIMDEAHERSLN-TD--ILFGLLKKVLARRRD 500 (1042)
T ss_pred -EE---EeeecCC--CceeEEEeccchHHHHHhh-----hhhhhheeEEEechhhhcccc-hH--HHHHHHHHHHHhhcc
Confidence 00 0111111 3466777776665433322 223345789999999985431 11 112233344445568
Q ss_pred CCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC-CCceEEEEEee-cchhhHHHHHHHHHHhcCCccEEEEeCccchH
Q 010884 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYK-DLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271 (498)
Q Consensus 194 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~ni~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~ 271 (498)
..+|.+|||+...-. ...++ ..|.....+-. ..++.|.-... +..+........+-...+.+-++||....+..
T Consensus 501 lKliVtSATm~a~kf---~nfFg-n~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqedi 576 (1042)
T KOG0924|consen 501 LKLIVTSATMDAQKF---SNFFG-NCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDI 576 (1042)
T ss_pred ceEEEeeccccHHHH---HHHhC-CCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcch
Confidence 999999999977643 34343 23332222111 11122211111 11111111111222233556799999888766
Q ss_pred HHHHHH----HHh------CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC------
Q 010884 272 DELSAY----LSA------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------ 335 (498)
Q Consensus 272 ~~l~~~----L~~------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~------ 335 (498)
+-.... |.+ .++.+..+++.|+...+..+++.-..|--++||||++++..+.+|++++||..+.
T Consensus 577 E~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvy 656 (1042)
T KOG0924|consen 577 ECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVY 656 (1042)
T ss_pred hHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeec
Confidence 554444 433 2678899999999999988888877888899999999999999999999997663
Q ss_pred ------------CCCHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 336 ------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 336 ------------p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
|-|-.+--||.|||||.| +|.|+-+|+..
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 347788899999999998 99999999864
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3.5e-18 Score=182.28 Aligned_cols=322 Identities=21% Similarity=0.182 Sum_probs=214.2
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (498)
.+-++..|.. +++.|.-.--.+..|+ ++.|.||.|||+++.+|++. .+..+.|++|+..|+.+....+..
T Consensus 73 Ea~~R~lGm~-~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 73 EAGKRVMGMR-HFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred HHHHHHhCCC-cchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4445566754 4577765544454444 99999999999999998863 577899999999999999988876
Q ss_pred cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc-----
Q 010884 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS----- 172 (498)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~----- 172 (498)
+|+.+.++.+......+...+. .+|+|+|.-.+.=.-+...+. ...-...+.++||||+|.++=
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 6899999988888888777664 789999987653222121111 111235689999999998731
Q ss_pred ------cCCCChHHHHHHHHHHHhC--------------------CCC--------------------------------
Q 010884 173 ------WGHDFRPSYRKLSSLRNYL--------------------PDV-------------------------------- 194 (498)
Q Consensus 173 ------~g~~fr~~~~~l~~l~~~~--------------------~~~-------------------------------- 194 (498)
....-...|..+..+...+ ...
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 1111111222211111111 000
Q ss_pred --------------------------------------------------------------------------------
Q 010884 195 -------------------------------------------------------------------------------- 194 (498)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (498)
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence
Q ss_pred ----CEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEe
Q 010884 195 ----PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYC 265 (498)
Q Consensus 195 ----~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~ 265 (498)
.+.+||+|+..+. ..+.+..++ .++..+.++|.+.... .+. ....|+..+.+-+.. ..+.|+||-+
T Consensus 382 r~Y~kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~vy~-t~~eK~~Ai~~ei~~~~~~GrPVLVGT 456 (913)
T PRK13103 382 RLYNKLSGMTGTADTEA-FEFRQIYGL---DVVVIPPNKPLARKDFNDLVYL-TAEEKYAAIITDIKECMALGRPVLVGT 456 (913)
T ss_pred HhcchhccCCCCCHHHH-HHHHHHhCC---CEEECCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 1344444443322 222332222 2334455555543221 122 224677777666643 3578999999
Q ss_pred CccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC--------------------
Q 010884 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK-------------------- 325 (498)
Q Consensus 266 ~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p-------------------- 325 (498)
.|++..+.|+..|.+.|++...+++.....+-.-+.++=+ .-.|.|||+++|+|.|+.
T Consensus 457 ~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~ 534 (913)
T PRK13103 457 ATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQI 534 (913)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHH
Confidence 9999999999999999999888888755444343333322 335999999999999984
Q ss_pred ------------Cc-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 326 ------------DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 326 ------------~v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
.| =+||-...+.|..---|-.|||||.|.||.+..|++.+|-
T Consensus 535 ~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 535 AQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 2788899999999999999999999999999999998774
No 123
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.82 E-value=3.4e-19 Score=190.35 Aligned_cols=314 Identities=22% Similarity=0.257 Sum_probs=223.6
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHH---HHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHc-CCce
Q 010884 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEK-GIAG 105 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl---~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~-gi~~ 105 (498)
.++|.+|.+.++.++ .++++|+.-.-|-|||+ +|+ .-.....|..|||+|+..+ ..|.+.+..+ .+++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHhhhce
Confidence 579999999998766 57899999999999993 333 3334457899999999776 5677776663 5666
Q ss_pred eEecCCCCHHHHHHHHHHHhcC---CCcccEEEECcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSG---KPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (498)
..+.+..........+.-.... .-.+.++++|.|++... .++. .. .+.+++|||||++..-.
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~---~i----~w~~~~vDeahrLkN~~------- 513 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELS---KI----PWRYLLVDEAHRLKNDE------- 513 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhc---cC----CcceeeecHHhhcCchH-------
Confidence 6666666555444444443333 22578899999977543 2322 22 37899999999997532
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC------CC---------------------------
Q 010884 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN--------------------------- 228 (498)
Q Consensus 182 ~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~--------------------------- 228 (498)
..+...+..+.--..+++|+||-.+..+.++..+++..|.-+... ++
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 233334444555557999999999888888888877655433110 00
Q ss_pred --CC---ceEEEEEeecch-----------------------------------------------h---hHH------H
Q 010884 229 --RP---NLFYEVRYKDLL-----------------------------------------------D---DAY------A 247 (498)
Q Consensus 229 --r~---ni~~~v~~~~~~-----------------------------------------------~---~~~------~ 247 (498)
.| .-.+.|...... + ..+ .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 00 001111100000 0 001 1
Q ss_pred HHHHHHHh---------------cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHH---cCCC
Q 010884 248 DLCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI---SSRK 309 (498)
Q Consensus 248 ~l~~~l~~---------------~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~---~g~~ 309 (498)
.|..++.. .++.++|||-..++..+-|+++|..++++.-.+.|.+..+.|++.+..|. +...
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 12222211 24678999999999999999999999999999999999999999999998 3567
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE--Eccc
Q 010884 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YGMD 365 (498)
Q Consensus 310 ~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~--~~~~ 365 (498)
.+|+||.|.|.|||+...+.||+||-.+++.+-+|..-||.|-|+...+-+| ++..
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 7999999999999999999999999999999999999999999998865444 5543
No 124
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=2e-18 Score=171.24 Aligned_cols=281 Identities=20% Similarity=0.248 Sum_probs=189.7
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccE
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (498)
+-++-++||.||||--+ +--+......++..|++-|+.+..+++++.|+++..+++..... ....++ ....
T Consensus 192 kIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~-------~~~~~~-~a~h 262 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRF-------VLDNGN-PAQH 262 (700)
T ss_pred eEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeee-------cCCCCC-cccc
Confidence 45677899999999643 33455677889999999999999999999999998887643211 111122 3677
Q ss_pred EEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc--cCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHH
Q 010884 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (498)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 211 (498)
+-+|.|++.+.. .+++.||||.+.|.+ .|+.+-.++..+ ... . |-|.+- |.+...+
T Consensus 263 vScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAWTrALLGl--~Ad---E---iHLCGe--psvldlV 320 (700)
T KOG0953|consen 263 VSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAWTRALLGL--AAD---E---IHLCGE--PSVLDLV 320 (700)
T ss_pred eEEEEEEeecCC------------ceEEEEehhHHhhcCcccchHHHHHHHhh--hhh---h---hhccCC--chHHHHH
Confidence 888999887643 278999999999976 343222211111 111 1 112222 3344444
Q ss_pred HHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc-eEeecC
Q 010884 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHA 290 (498)
Q Consensus 212 ~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~ 290 (498)
.+.+.+....+....+.|-+ +. ...+.+..-+.....+- .|.|-|++..-.+...+.+.|.. ++.++|
T Consensus 321 ~~i~k~TGd~vev~~YeRl~--------pL--~v~~~~~~sl~nlk~GD-CvV~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 321 RKILKMTGDDVEVREYERLS--------PL--VVEETALGSLSNLKPGD-CVVAFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred HHHHhhcCCeeEEEeecccC--------cc--eehhhhhhhhccCCCCC-eEEEeehhhHHHHHHHHHHhcCcceEEEec
Confidence 44444433322222222111 10 01112333333333332 34467899999999999998776 999999
Q ss_pred CCCHHHHHHHHHHHHc--CCCeEEEEeCccccccccCCccEEEEeCCCC---------CHHHHHHHHhhcCCCCC--Cce
Q 010884 291 GLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQL--PSK 357 (498)
Q Consensus 291 ~l~~~~R~~~~~~f~~--g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q~~GRagR~g~--~~~ 357 (498)
+++++.|.+-...|.+ ++++|||||+|+|||+|+ +|+.||.+++-+ +..+..|..|||||.|. +.-
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G 468 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQG 468 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCc
Confidence 9999999999999996 899999999999999999 799999998653 78899999999999874 233
Q ss_pred EEEEEccchHHHHHHHHHhc
Q 010884 358 SLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 358 ~~~~~~~~d~~~~~~~~~~~ 377 (498)
-++-+..+|...++.+++..
T Consensus 469 ~vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 469 EVTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred eEEEeeHhhHHHHHHHHhCC
Confidence 44455577888888887743
No 125
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=6.4e-18 Score=173.83 Aligned_cols=308 Identities=18% Similarity=0.132 Sum_probs=211.3
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHH--HHHHhHhcC----CCeEEEeCcHHHHHHHHHHHHHHcCCc--e
Q 010884 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKGIA--G 105 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl--~~~l~~l~~----~~~~lvl~P~~~L~~q~~~~l~~~gi~--~ 105 (498)
.+.|+|++.++.+. .+...|+--..|-|||+ +..+.+|.. .+++|||||. .|+.||+.++..+..+ +
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 57799999998875 34566788899999994 334555543 3789999998 5668999999997655 4
Q ss_pred eEecCCCCHHH---------HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCC
Q 010884 106 EFLSSTQTMQV---------KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (498)
Q Consensus 106 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (498)
..+++...... +..+... ...+...++++|.+.+.. .........++++|+||.|.|-..+
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r--~~~~~~~ilitty~~~r~------~~d~l~~~~W~y~ILDEGH~IrNpn-- 353 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIR--KVATDGGILITTYDGFRI------QGDDLLGILWDYVILDEGHRIRNPN-- 353 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhhee--eecccCcEEEEehhhhcc------cCcccccccccEEEecCcccccCCc--
Confidence 44554444211 1111100 111123344444443322 2223334458999999999998765
Q ss_pred ChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE------ecCCC----------------------
Q 010884 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSSFN---------------------- 228 (498)
Q Consensus 177 fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~~---------------------- 228 (498)
.++......++....+.||+|+-.+...+++..+.+..|-.+ ...|.
T Consensus 354 -----s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 354 -----SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred -----cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 455556667778889999999887777777665544332111 00000
Q ss_pred ------------------------CCceEEEEEeec--------------------------------------------
Q 010884 229 ------------------------RPNLFYEVRYKD-------------------------------------------- 240 (498)
Q Consensus 229 ------------------------r~ni~~~v~~~~-------------------------------------------- 240 (498)
.|.-.-.|.+..
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 000000000000
Q ss_pred -------------c-----hhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHH-hCCCceEeecCCCCHHHHHH
Q 010884 241 -------------L-----LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSS 299 (498)
Q Consensus 241 -------------~-----~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~ 299 (498)
. ...++..+..+++. ..+.++|+|..++...+-|...|. ..|+.+..+.|..+...|..
T Consensus 509 l~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 509 LDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred ccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 0 01234444444432 234589999999999999999999 68999999999999999999
Q ss_pred HHHHHHcCCC--eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 300 VLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 300 ~~~~f~~g~~--~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
+..+|.+++. -+|++|.+.|.|+|+-..+.||.||+.|++..-.|..-||-|-|+...+++|
T Consensus 589 lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 589 LVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 9999997764 3689999999999999999999999999999999999999999998876665
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.7e-17 Score=173.71 Aligned_cols=322 Identities=17% Similarity=0.159 Sum_probs=214.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (498)
..+.++.+|.. +++.|.-.--.+..|+ +..|.||-||||++.+|+.. .+..+-||+...-|+..-.+.+..
T Consensus 68 REA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 68 REATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred HHHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHH
Confidence 45556677875 5688876666666664 89999999999999999863 466788888888898766555544
Q ss_pred -cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc----
Q 010884 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS---- 172 (498)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~---- 172 (498)
+|+.+....+......+...+. .+|.|+|.--+.-.-+...+. ...-...+.+.||||++.++=
T Consensus 145 fLGLsvG~i~~~~~~~~rr~aY~--------~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEAr 216 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREAYA--------CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAK 216 (925)
T ss_pred HhCCceeeeCCCCChHHHHHhcc--------CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccC
Confidence 7999998888877777766553 688888876554332222221 112235588999999998731
Q ss_pred -------cCCCChHHHHHHHHHHHhCC--------CC-------------------------------------------
Q 010884 173 -------WGHDFRPSYRKLSSLRNYLP--------DV------------------------------------------- 194 (498)
Q Consensus 173 -------~g~~fr~~~~~l~~l~~~~~--------~~------------------------------------------- 194 (498)
....--..|..+..+...+. ..
T Consensus 217 TPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 217 TPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred CcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 11111123333333332211 01
Q ss_pred ------------------------------------------------------------------CEEEEeecCChHHH
Q 010884 195 ------------------------------------------------------------------PILALTATAAPKVQ 208 (498)
Q Consensus 195 ------------------------------------------------------------------~~l~lSAT~~~~~~ 208 (498)
++.+||+|+..+.
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~- 375 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE- 375 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH-
Confidence 1344444443322
Q ss_pred HHHHHHhCCCCCeEEecCCCCCceEEEEE---eecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCC
Q 010884 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (498)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~r~ni~~~v~---~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~ 283 (498)
..+.+..++ .++..+.++|.+..... +. ....++..+.+.+.. ..+.|+||.|.|.+.++.|+..|.+.|+
T Consensus 376 ~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi 451 (925)
T PRK12903 376 QEFIDIYNM---RVNVVPTNKPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANI 451 (925)
T ss_pred HHHHHHhCC---CEEECCCCCCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 222222222 23344556665543321 12 224566666665543 3578999999999999999999999999
Q ss_pred ceEeecCCCCHHHHHHHHHHHHcC-CCeEEEEeCccccccccCCcc--------EEEEeCCCCCHHHHHHHHhhcCCCCC
Q 010884 284 SCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQL 354 (498)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g-~~~vlvaT~a~~~GiD~p~v~--------~VI~~~~p~s~~~y~Q~~GRagR~g~ 354 (498)
+...+++.-...+-.-+. ..| .-.|.|||+++|+|.|+.--. +||....|.|..---|-.||+||.|.
T Consensus 452 ~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 452 PHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred CceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 999999875444433332 234 346999999999999986322 89999999999989999999999999
Q ss_pred CceEEEEEccchH
Q 010884 355 PSKSLLYYGMDDR 367 (498)
Q Consensus 355 ~~~~~~~~~~~d~ 367 (498)
||.+..|++.+|-
T Consensus 529 pGss~f~lSLeD~ 541 (925)
T PRK12903 529 VGESRFFISLDDQ 541 (925)
T ss_pred CCcceEEEecchH
Confidence 9999999987774
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=2.2e-18 Score=147.87 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccc
Q 010884 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (498)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~G 321 (498)
.+...+.+++... .++++||||+++..++.+++.|.+.+..+..+||+++..+|..+++.|.++...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5677777777665 36789999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
+|+|+++.||++++|++...|.|++||++|.|+.|.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998877654
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.78 E-value=3.7e-17 Score=172.26 Aligned_cols=310 Identities=18% Similarity=0.112 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHHHHc---C-------CCEEEEcCCCchHHHHH--HHhHhcC---C-----CeEEEeCcHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLS---G-------RDCFCLMPTGGGKSMCY--QIPALAK---P-----GIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~---g-------~dvlv~apTG~GKTl~~--~l~~l~~---~-----~~~lvl~P~~~L~~q~~~~ 97 (498)
.++|+|.+++.-+.+ | ..+|+.-..|+|||+-. ++..+.+ . .+.|||+|. +|+..|..+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999987642 1 24566668999999632 2233322 2 578999997 677999999
Q ss_pred HHHcCCc----eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 010884 98 LKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 98 l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (498)
+.++.++ ...+.+.... .......+..- .--.+.+|..+.+...+...........++++|.||.|.+-.-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~---~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS--SWIKLKSILFL---GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHhccccccceeeeecccch--hhhhhHHHHHh---hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccch
Confidence 9997553 2222222221 00001111100 1112334444444443333334444566999999999997653
Q ss_pred CCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC------CC-------------------
Q 010884 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN------------------- 228 (498)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~------------------- 228 (498)
. ..+-..+..+.-...|+||+|+-.+...++.+.+++-+|.++... +.
T Consensus 392 ~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 392 D-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred h-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 2 223233333344557999999999988888888888777654211 00
Q ss_pred -------------------------CCceEEEEEe-ecch--hhHH----------------------------------
Q 010884 229 -------------------------RPNLFYEVRY-KDLL--DDAY---------------------------------- 246 (498)
Q Consensus 229 -------------------------r~ni~~~v~~-~~~~--~~~~---------------------------------- 246 (498)
.|..+..+.. +... ...+
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 0111111111 0000 0001
Q ss_pred ------------------------------------HHHHHHHHhcCCccEE---EEeCc-cchHHHHHHHHHhCCCceE
Q 010884 247 ------------------------------------ADLCSVLKANGDTCAI---VYCLE-RTTCDELSAYLSAGGISCA 286 (498)
Q Consensus 247 ------------------------------------~~l~~~l~~~~~~~~I---Vf~~t-~~~~~~l~~~L~~~g~~~~ 286 (498)
..|..++... ..+++ ||... +...+.+...++-.|+.+.
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhcCceEE
Confidence 1111111000 11122 33333 3344444444555699999
Q ss_pred eecCCCCHHHHHHHHHHHHcCC---CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 287 AYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~---~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
.+||.|+.++|+.+++.|.+-. .-.|.+|-|.|.||++-+...||.||++++++.-.|.++||-|+||+..|++|
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 9999999999999999999532 33678899999999999999999999999999999999999999999988887
No 129
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.78 E-value=1.2e-17 Score=178.63 Aligned_cols=304 Identities=17% Similarity=0.187 Sum_probs=200.4
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------C--CCeEEEeCcHHHHHHHHHHHHHH-----cCCce
Q 010884 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVVSPLIALMENQVIGLKE-----KGIAG 105 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~--~~~~lvl~P~~~L~~q~~~~l~~-----~gi~~ 105 (498)
....+.++++++.+++-+++.+.||+|||. |+|.+. . ...+++--|.|-=+....++... .|-.+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 456888899999999999999999999996 444431 1 33466666886555455544433 22111
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (498)
.+-.... . ......+++|+|.-+ ++..+........+..||+||+|.-+.. .||--. -+.
T Consensus 252 GYqvrl~----------~--~~s~~t~L~fcTtGv-----LLr~L~~~~~l~~vthiivDEVHER~i~-~DflLi--~lk 311 (924)
T KOG0920|consen 252 GYQVRLE----------S--KRSRETRLLFCTTGV-----LLRRLQSDPTLSGVTHIIVDEVHERSIN-TDFLLI--LLK 311 (924)
T ss_pred eEEEeee----------c--ccCCceeEEEecHHH-----HHHHhccCcccccCceeeeeeEEEccCC-cccHHH--HHH
Confidence 1111000 0 011125555554332 3445555556677899999999997653 345432 334
Q ss_pred HHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCce-------------------EEE-----------
Q 010884 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-------------------FYE----------- 235 (498)
Q Consensus 186 ~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni-------------------~~~----------- 235 (498)
.++...|+.++|+||||...+...+... ..|++...++.-|.. .+.
T Consensus 312 ~lL~~~p~LkvILMSAT~dae~fs~YF~----~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 312 DLLPRNPDLKVILMSATLDAELFSDYFG----GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHhhhCCCceEEEeeeecchHHHHHHhC----CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 4666669999999999998665443322 333333222211100 000
Q ss_pred --EEeecchhhHHHHHHHHHHh-cCCccEEEEeCccchHHHHHHHHHhC-------CCceEeecCCCCHHHHHHHHHHHH
Q 010884 236 --VRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWI 305 (498)
Q Consensus 236 --v~~~~~~~~~~~~l~~~l~~-~~~~~~IVf~~t~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~ 305 (498)
+...+..-+.+..+...+.. ...+.+|||.+...+...+.+.|... .+-+..+|+.|+..+++.+.+.--
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp 467 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPP 467 (924)
T ss_pred chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCC
Confidence 00000111233444444433 34678999999999999999999742 255789999999999999999988
Q ss_pred cCCCeEEEEeCccccccccCCccEEEEeCCCC------------------CHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 306 ~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
.|.-+||+||+.++.+|-++||-+||..+.-+ |..+-.||.|||||. ++|.|+.+|+....
T Consensus 468 ~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 468 KGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred CCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 99999999999999999999999999665332 566779999999999 59999999987655
Q ss_pred HH
Q 010884 368 RR 369 (498)
Q Consensus 368 ~~ 369 (498)
..
T Consensus 547 ~~ 548 (924)
T KOG0920|consen 547 EK 548 (924)
T ss_pred hh
Confidence 43
No 130
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.1e-18 Score=135.76 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.8
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 010884 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (498)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g 353 (498)
+.|+..|+.+..+||+++.++|..+++.|.+++..|||||+++++|||+|++++||++++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999987
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=1.1e-18 Score=170.78 Aligned_cols=290 Identities=17% Similarity=0.168 Sum_probs=196.2
Q ss_pred CCCCHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcC-C---ceeEec
Q 010884 37 AQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-I---AGEFLS 109 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g---~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~g-i---~~~~~~ 109 (498)
.++||+|+..+..+..+ +..+++.|+|+|||++-.-.+..-.+.+||++.+---+.||..+++.+. + ....++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 46899999999998854 5889999999999998766666667889999998888899999888752 1 122233
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhH----HHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~----~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (498)
+... ........+++.|.-+++..+.. ..+........++++++||+|.+...- ||....-+.
T Consensus 381 sd~K-----------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRVlsiv~ 447 (776)
T KOG1123|consen 381 SDAK-----------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRVLSIVQ 447 (776)
T ss_pred cccc-----------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHHHHHHH
Confidence 2211 11122467999999998865432 233445556679999999999997643 664433332
Q ss_pred HHHHhCCCCCEEEEeecCChHHHHHHHHHhC-CCCCeEEecCC-------CCCceEEEEEeec-----------------
Q 010884 186 SLRNYLPDVPILALTATAAPKVQKDVMESLC-LQNPLVLKSSF-------NRPNLFYEVRYKD----------------- 240 (498)
Q Consensus 186 ~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~~-------~r~ni~~~v~~~~----------------- 240 (498)
. .-.++||||+..+.-+ +..|+ +..|..+..+. ...++...-++..
T Consensus 448 a-------HcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 448 A-------HCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred H-------HhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 2 2258999998665322 22121 11222221110 0011111111111
Q ss_pred -----chhhHHHH---HHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHH-cCCCeE
Q 010884 241 -----LLDDAYAD---LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SSRKQV 311 (498)
Q Consensus 241 -----~~~~~~~~---l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~g~~~v 311 (498)
....|+.. |..+.. ..+.++|||..++-...++|-.|.+ -+++|..++.+|..+++.|+ +..++.
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred heeeecCcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 11233333 333323 3567899999999888888887754 57889999999999999999 667889
Q ss_pred EEEeCccccccccCCccEEEEeCCC-CCHHHHHHHHhhcCCCCC
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQL 354 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~g~ 354 (498)
|+-+-+....||+|...++|+...- .|-.+-.||.||.-|+.+
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 9999999999999999999987653 478888999999998754
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=3.4e-16 Score=166.48 Aligned_cols=282 Identities=17% Similarity=0.107 Sum_probs=179.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 010884 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (498)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~-- 100 (498)
+..+.++.+|.. +++.|.-+.-.+ .+.-++.|.||-|||+++.+|+.. .+..+-||+++..|+..-.+.+..
T Consensus 65 vrEa~~R~lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 345566677876 568886554444 445699999999999999999853 477889999999999987777655
Q ss_pred --cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH---hhhhcCCccEEEEeccccccc---
Q 010884 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (498)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (498)
+|+.+..+..+.....+...+. .+|.|+|.--++-.-+...+. .......+.+.||||+|.++=
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 7999999888888877776653 688998876554333322221 111234588999999998731
Q ss_pred --------cCCCChHHHHHHHHHHHhCC----------------------------------------------------
Q 010884 173 --------WGHDFRPSYRKLSSLRNYLP---------------------------------------------------- 192 (498)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~---------------------------------------------------- 192 (498)
....--..|..+..+...+.
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 00000011111111111000
Q ss_pred ---------------------------C--------------------------------------CCEEEEeecCChHH
Q 010884 193 ---------------------------D--------------------------------------VPILALTATAAPKV 207 (498)
Q Consensus 193 ---------------------------~--------------------------------------~~~l~lSAT~~~~~ 207 (498)
+ ..+.+||+|+..+
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te- 372 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE- 372 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-
Confidence 0 0256677776543
Q ss_pred HHHHHHHhCCCCCeEEecCCCCCceEEEEEe--ecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCC
Q 010884 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (498)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~ 283 (498)
...+.+..++ .++..+.++|........ -.....|+..+.+-+.. ..+.|+||-|.|.+..+.++..|.+.|+
T Consensus 373 ~~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 373 ELEFEKIYNL---EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHhCC---CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 2334443333 344456666665443321 11224566666554432 3578999999999999999999999999
Q ss_pred ceEeecCCC-C-HHHHHHHHHHHHcCCCeEEEEeCcccccccc
Q 010884 284 SCAAYHAGL-N-DKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (498)
Q Consensus 284 ~~~~~h~~l-~-~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~ 324 (498)
+...+++.- . ..+-.-|.++=+ .-.|.|||+++|+|.|+
T Consensus 450 ~h~vLNAk~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 450 PHQLLNAKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDI 490 (870)
T ss_pred ccceeeCCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCe
Confidence 999999974 2 334333333222 23599999999999886
No 133
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.77 E-value=3e-17 Score=168.75 Aligned_cols=321 Identities=19% Similarity=0.191 Sum_probs=232.5
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHH--HHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 010884 35 GHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (498)
Q Consensus 35 g~~~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~--~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (498)
|+. +.++|.-.++.+. .+-+.|+.-.-|-|||.- +.+..|. ..|.-|||+|...| +.|.+++.++....
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl 474 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSL 474 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCce
Confidence 443 8899999998754 334678888999999942 1222222 36788999999777 78999999998777
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (498)
.......+..++..+...+....++++++++|.-++++..--..+ ....+++++|+||+|.+...+. ..|..|-
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsf---lk~~~~n~viyDEgHmLKN~~S---eRy~~LM 548 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSF---LKNQKFNYVIYDEGHMLKNRTS---ERYKHLM 548 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHH---HHhccccEEEecchhhhhccch---HHHHHhc
Confidence 777777777899999999999988999999999988764322222 2223489999999999988663 1244443
Q ss_pred HHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC-------------------------------------
Q 010884 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN------------------------------------- 228 (498)
Q Consensus 186 ~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~------------------------------------- 228 (498)
.+ +.-..++||+||-.+...+++..|.+--|.++..+..
T Consensus 549 ~I----~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 549 SI----NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred cc----cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 33 3455799999998877777777665544443311100
Q ss_pred -----------CCceEEEEEeecch-------------------------------------------------------
Q 010884 229 -----------RPNLFYEVRYKDLL------------------------------------------------------- 242 (498)
Q Consensus 229 -----------r~ni~~~v~~~~~~------------------------------------------------------- 242 (498)
.|.-...+.+....
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 00000000000000
Q ss_pred -------------------------------------------------------hhHHHHHHHHHHh--cCCccEEEEe
Q 010884 243 -------------------------------------------------------DDAYADLCSVLKA--NGDTCAIVYC 265 (498)
Q Consensus 243 -------------------------------------------------------~~~~~~l~~~l~~--~~~~~~IVf~ 265 (498)
..|+..|..+|.+ ..+.+++||-
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 0233334444432 2347899999
Q ss_pred CccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCC--CeEEEEeCccccccccCCccEEEEeCCCCCHHHHH
Q 010884 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (498)
Q Consensus 266 ~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~ 343 (498)
.-....+-|...|.-.++....+.|...-..|+.++..|..++ .-+|++|-|.|.|||+-....||.+|+..++-.-.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999999999999999999999999999999999999554 34689999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCce--EEEEEccchH
Q 010884 344 QESGRAGRDQLPSK--SLLYYGMDDR 367 (498)
Q Consensus 344 Q~~GRagR~g~~~~--~~~~~~~~d~ 367 (498)
|.--||.|.|+... .+.+++..-+
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999998654 4455665543
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.76 E-value=2.2e-16 Score=173.35 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=105.1
Q ss_pred CEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEe--ec-----chhhHHHHHHHHHHh--cCCccEEEEe
Q 010884 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KD-----LLDDAYADLCSVLKA--NGDTCAIVYC 265 (498)
Q Consensus 195 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~-----~~~~~~~~l~~~l~~--~~~~~~IVf~ 265 (498)
++|++|||++-.-...+.+.+|+........++...+-...+.. .. ..+.....+.+.+.. ..+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 57999999962111236778888644333222222111111111 11 111222233332211 2356799999
Q ss_pred CccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC--CccEEEEeCCCC------
Q 010884 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK------ 337 (498)
Q Consensus 266 ~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p--~v~~VI~~~~p~------ 337 (498)
+|.+..+.+++.|....+.+ ...|.-. .|..++++|++++-.||++|..|.+|||+| +...||...+|.
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997665444 4444222 256689999998889999999999999997 456677777773
Q ss_pred ------------------------CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 338 ------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 338 ------------------------s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
-+..+.|-+||.-|.....-++++++..
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 1234689999999987654456666644
No 135
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=3.7e-16 Score=152.82 Aligned_cols=322 Identities=16% Similarity=0.187 Sum_probs=202.1
Q ss_pred ccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh------cCCCeEEEe
Q 010884 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVV 84 (498)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l------~~~~~~lvl 84 (498)
....+.|...+.++...+.|++.-... .+..+.+.++.+.+++-+++++.||+|||. |+|.. ...+.+..-
T Consensus 21 ~k~~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CT 97 (699)
T KOG0925|consen 21 AKAINPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACT 97 (699)
T ss_pred hhhcCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeec
Confidence 344677888888899999999864443 234555566677778889999999999995 33332 223556666
Q ss_pred CcHHHHHHHHHHHHHH-c----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhh-HHHHHhhhhcCC
Q 010884 85 SPLIALMENQVIGLKE-K----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGL 158 (498)
Q Consensus 85 ~P~~~L~~q~~~~l~~-~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~-~~~l~~~~~~~~ 158 (498)
-|.+.-+.+...+... + |-.+.+-. .++++.+. +.-+ ..+|.+. +......+..+.
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysI----------rfEdC~~~--~T~L------ky~tDgmLlrEams~p~l~~ 159 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSI----------RFEDCTSP--NTLL------KYCTDGMLLREAMSDPLLGR 159 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccc----------cccccCCh--hHHH------HHhcchHHHHHHhhCccccc
Confidence 6888766666555433 2 22111100 00111110 0111 2234432 233344555677
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEE-
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR- 237 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~- 237 (498)
+++||+||||.-+--. --.+--|..+....|+.++|.+|||+...-.+. .....|.+-..+.....++|.-.
T Consensus 160 y~viiLDeahERtlAT---DiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~----yf~n~Pll~vpg~~PvEi~Yt~e~ 232 (699)
T KOG0925|consen 160 YGVIILDEAHERTLAT---DILMGLLKEVVRNRPDLKLVVMSATLDAEKFQR----YFGNAPLLAVPGTHPVEIFYTPEP 232 (699)
T ss_pred ccEEEechhhhhhHHH---HHHHHHHHHHHhhCCCceEEEeecccchHHHHH----HhCCCCeeecCCCCceEEEecCCC
Confidence 9999999999743100 011123555666669999999999997765432 22233443333333333333322
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC---------CCceEeecCCCCHHHHHHHHHHHH---
Q 010884 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWI--- 305 (498)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~--- 305 (498)
.++..+..+..+.++......+-++||....++.+..++.+... .+++..+| ++++..+.+.-.
T Consensus 233 erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~ 308 (699)
T KOG0925|consen 233 ERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKR 308 (699)
T ss_pred ChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCccc
Confidence 23344455666666666556777999999999988888888743 24677787 444444333322
Q ss_pred cC--CCeEEEEeCccccccccCCccEEEEeCC------------------CCCHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 306 SS--RKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 306 ~g--~~~vlvaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
+| .-+|+|+|+.+...+-+++|.+||.-++ |-|..+-.||.|||||. ++|.|+.+|+++
T Consensus 309 ~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 309 NGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 12 2479999999999999999999997664 33788899999999998 499999999864
No 136
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.8e-14 Score=153.21 Aligned_cols=281 Identities=19% Similarity=0.152 Sum_probs=177.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (498)
..+.++.+|.. +++.|.-.--.+..|+ ++.|.||-||||++.+|+.. .+..+-||++..-|+..-.+.+..
T Consensus 75 REa~~R~lG~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 75 REASKRVLGMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred HHHHHHHhCCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 34555667875 4577755555554454 99999999999999999875 567799999999999876666554
Q ss_pred -cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh---hhhcCCccEEEEeccccccc----
Q 010884 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS---- 172 (498)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~~---- 172 (498)
+|+.+..+.+......+...+. .+|+|+|+--+.=.-+...+.. ......+.+.||||+|.++=
T Consensus 152 ~LGLtvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEAr 223 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEERKKNYA--------CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEAR 223 (939)
T ss_pred HhCCeEEEECCCCChHHHHHhcC--------CCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCC
Confidence 7999999888877777666553 7899999886654443443321 11235588999999998731
Q ss_pred -------cCCCChHHHHHHHHHHHhCC---------------CC------------------------------------
Q 010884 173 -------WGHDFRPSYRKLSSLRNYLP---------------DV------------------------------------ 194 (498)
Q Consensus 173 -------~g~~fr~~~~~l~~l~~~~~---------------~~------------------------------------ 194 (498)
....-...|.....+...+. ..
T Consensus 224 TPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~A 303 (939)
T PRK12902 224 TPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNA 303 (939)
T ss_pred CcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHH
Confidence 11111122222222221110 01
Q ss_pred ------------------------------------------------------------------------CEEEEeec
Q 010884 195 ------------------------------------------------------------------------PILALTAT 202 (498)
Q Consensus 195 ------------------------------------------------------------------------~~l~lSAT 202 (498)
.+.+||+|
T Consensus 304 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGT 383 (939)
T PRK12902 304 LKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGT 383 (939)
T ss_pred HHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 13445555
Q ss_pred CChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEe--ecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHH
Q 010884 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYL 278 (498)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L 278 (498)
+..+. ..+.+..++ .++..+.++|.+...... -.....++..+.+-+.. ..+.|+||-+.|++..+.++..|
T Consensus 384 a~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L 459 (939)
T PRK12902 384 AKTEE-VEFEKTYKL---EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALL 459 (939)
T ss_pred CHHHH-HHHHHHhCC---cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHH
Confidence 43322 222332222 233445555555433221 11224566666655543 35789999999999999999999
Q ss_pred HhCCCceEeecCC-CC-HHHHHHHHHHHHcCC-CeEEEEeCccccccccC
Q 010884 279 SAGGISCAAYHAG-LN-DKARSSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (498)
Q Consensus 279 ~~~g~~~~~~h~~-l~-~~~R~~~~~~f~~g~-~~vlvaT~a~~~GiD~p 325 (498)
.+.|++...+++. .. ..+-.-+.+ .|+ -.|-|||+++|+|-|+.
T Consensus 460 ~~~gi~h~vLNAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 460 QEQGIPHNLLNAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHcCCchheeeCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCEe
Confidence 9999999999997 33 333333333 333 35899999999998863
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.71 E-value=1.3e-14 Score=162.31 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=109.6
Q ss_pred CEEEEeecCChHH-HHHHHHHhCCCCC----eEEecCCCCC-ceEEEEEe-ec----c-hhhHHHHHH----HHHHhcCC
Q 010884 195 PILALTATAAPKV-QKDVMESLCLQNP----LVLKSSFNRP-NLFYEVRY-KD----L-LDDAYADLC----SVLKANGD 258 (498)
Q Consensus 195 ~~l~lSAT~~~~~-~~~i~~~l~~~~~----~~~~~~~~r~-ni~~~v~~-~~----~-~~~~~~~l~----~~l~~~~~ 258 (498)
++|++|||++... ...+.+.+++.+. ..+.++|+.. +....+.. .. . .+.....+. +++.. .+
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~-~~ 752 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA-TK 752 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-CC
Confidence 4789999987532 3445677888642 2334445532 22222211 11 0 112223333 33333 34
Q ss_pred ccEEEEeCccchHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCC--ccEEEEeC
Q 010884 259 TCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFN 334 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~--v~~VI~~~ 334 (498)
++++|+++|.+..+.+++.|..... ....+.=+++...|..++++|++++-.||++|..|.+|||+|+ ++.||...
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 6799999999999999999976432 1222222444456888999999988889999999999999997 48899888
Q ss_pred CCC------------------------------CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 335 IPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 335 ~p~------------------------------s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
+|. -+..+.|.+||.-|.....-++++++..
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 774 1223488899999987655566666544
No 138
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=4.8e-16 Score=163.59 Aligned_cols=322 Identities=20% Similarity=0.206 Sum_probs=237.2
Q ss_pred CCCHHHHHHHHHHHc---CC-CEEEEcCCCchHHH------HHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 010884 38 QFRDKQLDAIQAVLS---GR-DCFCLMPTGGGKSM------CYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~---g~-dvlv~apTG~GKTl------~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~ 107 (498)
.++++|...++.+.. ++ +.|+.-.+|-|||. +|++-.....|.-+||+|+-.|. .|..++..+...+..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~-NW~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLV-NWSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccC-Cchhhccccccceee
Confidence 689999999988763 33 67888899999994 34444445678999999999886 688899888888888
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH
Q 010884 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (498)
+....+...+......+..++ +.||.+|.|.+..+ .++..+ .+.++||||.|+|..-- .+|..
T Consensus 473 i~YkGtp~~R~~l~~qir~gK--FnVLlTtyEyiikdk~lLsKI-------~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHGK--FNVLLTTYEYIIKDKALLSKI-------SWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhccc--ceeeeeeHHHhcCCHHHHhcc-------CCcceeecccccccchh-------hHHHH
Confidence 888888999998888888866 99999999977664 333222 37899999999997621 44444
Q ss_pred HHH-hCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC------CCCC-----------------------------
Q 010884 187 LRN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNRP----------------------------- 230 (498)
Q Consensus 187 l~~-~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~r~----------------------------- 230 (498)
-+. .+.....+++|+|+-.+....++..|++--|.++.+. |+.|
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 444 4445557899999888877777777776666655210 1100
Q ss_pred ----------------------------------------------------------------------ceE----EEE
Q 010884 231 ----------------------------------------------------------------------NLF----YEV 236 (498)
Q Consensus 231 ----------------------------------------------------------------------ni~----~~v 236 (498)
.++ ..+
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 000 000
Q ss_pred Eee--c----chhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcC-
Q 010884 237 RYK--D----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS- 307 (498)
Q Consensus 237 ~~~--~----~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g- 307 (498)
... . ....|+..|..++.+ ..++.++.||....-...+..+|.-.++....+.|.....+|...++.|..-
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 000 0 000222333333322 2356799999999999999999999999999999999999999999999843
Q ss_pred --CCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 308 --RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 308 --~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
-..+|.+|.+.|.|+|+...+.||.||..+++..+.|+.-||.|.|+...+.++....-...-+.|++.
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 245789999999999999999999999999999999999999999998888887655444444444443
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.68 E-value=2.3e-14 Score=150.95 Aligned_cols=168 Identities=14% Similarity=0.042 Sum_probs=111.3
Q ss_pred CEEEEeecCChHH------HHHHHHHhCCCCCe-EEecCCC----CCc--eEEEEEe------ecc--------------
Q 010884 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVRY------KDL-------------- 241 (498)
Q Consensus 195 ~~l~lSAT~~~~~------~~~i~~~l~~~~~~-~~~~~~~----r~n--i~~~v~~------~~~-------------- 241 (498)
++|+.|||+.-.. ...+.+.+++.... .+.++|+ +.. +.|.... ...
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5899999997643 67788899986442 3345677 444 2332211 001
Q ss_pred --hhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHc----CCCeEEEEe
Q 010884 242 --LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (498)
Q Consensus 242 --~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~vlvaT 315 (498)
.+.....+..++...+ +.++|.+.|.+..+.+++.|...---.....|..+ .|..++++|+. |.-.||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 0113345556665554 46999999999999999999764223345555432 45667888886 468899999
Q ss_pred Ccccccccc----------CCccEEEEeCCCC-------------------------CHHHHHHHHhhcCCCCCC--ceE
Q 010884 316 VAFGMGIDR----------KDVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (498)
Q Consensus 316 ~a~~~GiD~----------p~v~~VI~~~~p~-------------------------s~~~y~Q~~GRagR~g~~--~~~ 358 (498)
..|..|||+ ..++.||+..+|. ..-.+.|-+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2488999988883 123457888888887665 344
Q ss_pred EEEEccc
Q 010884 359 LLYYGMD 365 (498)
Q Consensus 359 ~~~~~~~ 365 (498)
++++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 4555543
No 140
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.65 E-value=6.5e-15 Score=144.51 Aligned_cols=309 Identities=16% Similarity=0.133 Sum_probs=191.7
Q ss_pred CCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHhH--hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCC
Q 010884 37 AQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPA--LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (498)
Q Consensus 37 ~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l~~--l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (498)
+.+-|+|.+.+.. +..|..+++.-..|-|||+-++..+ .......|||+|..- --.|.+.|..+--....++.-..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsv-rftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASV-RFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHH-hHHHHHHHHHhcccccceEEEec
Confidence 4578999998875 5567788888899999998665433 245788999999854 46888888875221111110000
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCC
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 193 (498)
.. ..+........+.+++.| .+..+.+......++++|+||.|.+..--. -| ......+.+. -
T Consensus 276 ~~------D~~~~~~t~~~v~ivSye------~ls~l~~~l~~~~~~vvI~DEsH~Lk~skt-kr--~Ka~~dllk~--a 338 (689)
T KOG1000|consen 276 SS------DPLPDVCTSNTVAIVSYE------QLSLLHDILKKEKYRVVIFDESHMLKDSKT-KR--TKAATDLLKV--A 338 (689)
T ss_pred cc------CCccccccCCeEEEEEHH------HHHHHHHHHhcccceEEEEechhhhhccch-hh--hhhhhhHHHH--h
Confidence 00 000000011234444444 444455555566699999999999865211 01 1111122221 2
Q ss_pred CCEEEEeecCChHHHHHHHHHhCCCCCeE------------------E----ecCC------------------------
Q 010884 194 VPILALTATAAPKVQKDVMESLCLQNPLV------------------L----KSSF------------------------ 227 (498)
Q Consensus 194 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~------------------~----~~~~------------------------ 227 (498)
..+|+||+|+.-.--.++...+..-++.+ + ....
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999974211000000000000000 0 0000
Q ss_pred CCCceEEEEEee--cch-----------------------------------hhHHHHHHHHHHh------cCCccEEEE
Q 010884 228 NRPNLFYEVRYK--DLL-----------------------------------DDAYADLCSVLKA------NGDTCAIVY 264 (498)
Q Consensus 228 ~r~ni~~~v~~~--~~~-----------------------------------~~~~~~l~~~l~~------~~~~~~IVf 264 (498)
..|.-.-.|... ... ..|...+.+++.. .++.+.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 001111111110 000 0122223333333 356789999
Q ss_pred eCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHH-cCCCeE-EEEeCccccccccCCccEEEEeCCCCCHHHH
Q 010884 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SSRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSMEAF 342 (498)
Q Consensus 265 ~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~g~~~v-lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y 342 (498)
|......+.+...+.+.++....+.|..++.+|....+.|+ +.++.| +++-.|.|+|+++...+.|++..+++++.-.
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 99999999999999999999999999999999999999999 455555 5667899999999999999999999999999
Q ss_pred HHHHhhcCCCCCCceEEEEEc
Q 010884 343 YQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 343 ~Q~~GRagR~g~~~~~~~~~~ 363 (498)
+|.-.|+.|-|+.+.+.++|-
T Consensus 579 lQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred EechhhhhhccccceeeEEEE
Confidence 999999999999887666553
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.65 E-value=9.5e-14 Score=148.22 Aligned_cols=289 Identities=15% Similarity=0.043 Sum_probs=187.7
Q ss_pred EEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cC-CceeEecCCCCHHHHHHHHHHHhcCCCccc
Q 010884 58 CLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (498)
Q Consensus 58 v~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~l~~-~g-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (498)
..+.+|+|||.+|+-.+ +..++.+||++|.++|..|....|++ +| ..+..+++..+...+...|..+..+. .+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~ 242 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--AR 242 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--Cc
Confidence 33446999999997433 56788999999999999999999998 55 67889999999999999999998876 78
Q ss_pred EEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHH
Q 010884 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (498)
Q Consensus 133 ~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 211 (498)
|+++|---+..|- .++++|||||=|.-+-... ..+..-+.+..++....++++|+-|||++-+.....
T Consensus 243 IViGtRSAvFaP~-----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 243 VVVGTRSAVFAPV-----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred EEEEcceeEEecc-----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 9988887776653 3589999999997643211 122233668888888889999999999998876543
Q ss_pred HHH-hC-CC-CCeEEecCCCCCceEEEEEee------------cchhhHHHHHHHHHHhcCCccEEEEeCcc--------
Q 010884 212 MES-LC-LQ-NPLVLKSSFNRPNLFYEVRYK------------DLLDDAYADLCSVLKANGDTCAIVYCLER-------- 268 (498)
Q Consensus 212 ~~~-l~-~~-~~~~~~~~~~r~ni~~~v~~~------------~~~~~~~~~l~~~l~~~~~~~~IVf~~t~-------- 268 (498)
..- +. +. ..... ....|.+...-... ......+..+.+.++. + ++|||.|.+
T Consensus 312 ~~g~~~~~~~~~~~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~--g-qvll~lnRrGyap~l~C 386 (665)
T PRK14873 312 ESGWAHDLVAPRPVV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEH--G-PVLVQVPRRGYVPSLAC 386 (665)
T ss_pred hcCcceeeccccccc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhc--C-cEEEEecCCCCCCeeEh
Confidence 221 00 00 00011 11223332221110 0112334444444442 3 788888766
Q ss_pred ---------------------------------------------------chHHHHHHHHHhC--CCceEeecCCCCHH
Q 010884 269 ---------------------------------------------------TTCDELSAYLSAG--GISCAAYHAGLNDK 295 (498)
Q Consensus 269 ---------------------------------------------------~~~~~l~~~L~~~--g~~~~~~h~~l~~~ 295 (498)
-.++++++.|.+. +.++....
T Consensus 387 ~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d------ 460 (665)
T PRK14873 387 ARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG------ 460 (665)
T ss_pred hhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC------
Confidence 2234444444432 23333322
Q ss_pred HHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 296 ~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
+..+++.|. ++..|||+|..+..=+. +++..|+..|... ....+.|-+||+||.+.+|..++.+.
T Consensus 461 -~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~ 537 (665)
T PRK14873 461 -GDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAE 537 (665)
T ss_pred -hHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 234677885 58999999983222222 4678887766432 34556889999999999999988865
Q ss_pred cchHHHHHHHH
Q 010884 364 MDDRRRMEFIL 374 (498)
Q Consensus 364 ~~d~~~~~~~~ 374 (498)
++. ..++.+.
T Consensus 538 p~~-~~~~~l~ 547 (665)
T PRK14873 538 SSL-PTVQALI 547 (665)
T ss_pred CCC-HHHHHHH
Confidence 543 3344333
No 142
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.64 E-value=4.1e-15 Score=136.48 Aligned_cols=167 Identities=31% Similarity=0.386 Sum_probs=113.9
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHhHhc---C--CCeEEEeCcHHHHHHHHHHHHHHcCC----
Q 010884 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKGI---- 103 (498)
Q Consensus 34 fg~~~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l~~l~---~--~~~~lvl~P~~~L~~q~~~~l~~~gi---- 103 (498)
+++..++++|.+++..+... +.+++.+|||+|||.++..+++. . ...++|++|+.+++.|+...+.....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 99999999999999987776653 2 36799999999999999999988652
Q ss_pred -ceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHH
Q 010884 104 -AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (498)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (498)
....+.+..... .+...... ...++++|++.+........ .....++++||||||.+..+. +...+.
T Consensus 84 ~~~~~~~~~~~~~----~~~~~~~~--~~~v~~~t~~~l~~~~~~~~----~~~~~~~~iIiDE~h~~~~~~--~~~~~~ 151 (201)
T smart00487 84 KVVGLYGGDSKRE----QLRKLESG--KTDILVTTPGRLLDLLENDL----LELSNVDLVILDEAHRLLDGG--FGDQLE 151 (201)
T ss_pred EEEEEeCCcchHH----HHHHHhcC--CCCEEEeChHHHHHHHHcCC----cCHhHCCEEEEECHHHHhcCC--cHHHHH
Confidence 222333322211 22222222 14777777765543221100 233458899999999998642 444343
Q ss_pred HHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHh
Q 010884 183 KLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (498)
Q Consensus 183 ~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l 215 (498)
. +.... +..+++++|||++...........
T Consensus 152 ~---~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 152 K---LLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred H---HHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 3 33333 578899999999977666444433
No 143
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.2e-15 Score=119.37 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 010884 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (498)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (498)
.+++.|...++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 57788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 010884 353 Q 353 (498)
Q Consensus 353 g 353 (498)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 144
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=1.8e-13 Score=149.21 Aligned_cols=166 Identities=20% Similarity=0.188 Sum_probs=107.3
Q ss_pred CEEEEeecCChHH-HHHHHHHhCCCCCe---EEecCCCCCceEEEEEee---c-----chhhHHHHHHHHHHhcCCccEE
Q 010884 195 PILALTATAAPKV-QKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYK---D-----LLDDAYADLCSVLKANGDTCAI 262 (498)
Q Consensus 195 ~~l~lSAT~~~~~-~~~i~~~l~~~~~~---~~~~~~~r~ni~~~v~~~---~-----~~~~~~~~l~~~l~~~~~~~~I 262 (498)
.+|++|||+++.. ...+...+++.... .+..+++........... . ...+....+.++++..++ .++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEE
Confidence 4899999987753 33455555554433 122233333221111111 1 112233444555555554 799
Q ss_pred EEeCccchHHHHHHHHHhCCCc-eEeecCCCCHHHHHHHHHHHHcCCC-eEEEEeCccccccccCCc--cEEEEeCCCC-
Q 010884 263 VYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDV--RLVCHFNIPK- 337 (498)
Q Consensus 263 Vf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~-~vlvaT~a~~~GiD~p~v--~~VI~~~~p~- 337 (498)
||++|.+..+.+++.|...... ....+|..+ +..+++.|..+.- .++|+|..|++|||+|+= +.||..++|.
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999876652 455555544 4478888886544 899999999999999874 8899888875
Q ss_pred -----------------------------CHHHHHHHHhhcCCCCCCceEEEEEcc
Q 010884 338 -----------------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 338 -----------------------------s~~~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
-+....|.+||+-|.....-.+++++.
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 334569999999997655445555554
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=7.2e-13 Score=143.87 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=104.9
Q ss_pred EEEEeecCChH-HHHHHHHHhCCCC---Ce--EEecCCCCCceEEEEEee----c-chh----hHHHHHHHHHHhcCCcc
Q 010884 196 ILALTATAAPK-VQKDVMESLCLQN---PL--VLKSSFNRPNLFYEVRYK----D-LLD----DAYADLCSVLKANGDTC 260 (498)
Q Consensus 196 ~l~lSAT~~~~-~~~~i~~~l~~~~---~~--~~~~~~~r~ni~~~v~~~----~-~~~----~~~~~l~~~l~~~~~~~ 260 (498)
+|++|||+++. ....+.+.+|+.. .. .+..+|+..+-...+... . ..+ .....|.+++. .+ +.
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~-gg 536 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KH-KG 536 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cC-CC
Confidence 78999998763 3455667788863 22 233445432221111111 0 111 22233444445 33 34
Q ss_pred EEEEeCccchHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHHc----CCCeEEEEeCccccccccCC--ccEEEEe
Q 010884 261 AIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVATVAFGMGIDRKD--VRLVCHF 333 (498)
Q Consensus 261 ~IVf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~vlvaT~a~~~GiD~p~--v~~VI~~ 333 (498)
++|+++|.+..+.++..|... +.. ...+|. ..|..+++.|++ |+-.||++|..|.+|||+|+ ++.||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 899999999999999999743 333 344553 356778877774 67789999999999999987 7899999
Q ss_pred CCCC----CH--------------------------HHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 334 NIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 334 ~~p~----s~--------------------------~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
.+|. ++ ..+.|.+||.-|....--.+++++..
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 8774 11 12478889999986554455555543
No 146
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.59 E-value=9e-14 Score=148.94 Aligned_cols=306 Identities=14% Similarity=0.127 Sum_probs=199.8
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEcCCCchHHHHHHHh-H---hcC--------CCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQIP-A---LAK--------PGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~--~--g~dvlv~apTG~GKTl~~~l~-~---l~~--------~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
.+|.+|++.++.+. + +-+.|++-.-|-|||+--+.. + ..+ ....|||||. .|.--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 47889999998754 2 347799999999999743221 1 112 2348999997 6778899999886
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH
Q 010884 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (498)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (498)
--....+........+........ +..+++++.+++.+. +..+. ...+.++|+||.|.|.+- -
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~----~~~iiVtSYDv~RnD-----~d~l~-~~~wNYcVLDEGHVikN~-------k 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYK----NANIIVTSYDVVRND-----VDYLI-KIDWNYCVLDEGHVIKNS-------K 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhcc----ccceEEeeHHHHHHH-----HHHHH-hcccceEEecCcceecch-------H
Confidence 433222333334444444443332 257877777776542 21111 223889999999997652 1
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE------ecCCC---------------------------
Q 010884 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSSFN--------------------------- 228 (498)
Q Consensus 182 ~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~~--------------------------- 228 (498)
.++.+..+.+..-..+.||+|+-.+..-+++..+.+--|-.+ ...|-
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 444444444445557999999876655555554433222111 00000
Q ss_pred -------------------CCceEEEEE----------------------------------------------------
Q 010884 229 -------------------RPNLFYEVR---------------------------------------------------- 237 (498)
Q Consensus 229 -------------------r~ni~~~v~---------------------------------------------------- 237 (498)
.|.+...+.
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 000000000
Q ss_pred -----eec---c-------------------hhhHHHHHHHHHHhc----------------CCccEEEEeCccchHHHH
Q 010884 238 -----YKD---L-------------------LDDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (498)
Q Consensus 238 -----~~~---~-------------------~~~~~~~l~~~l~~~----------------~~~~~IVf~~t~~~~~~l 274 (498)
..+ . ...|+..|.++|... .+.+++|||.-+...+.+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 000 0 002334444555331 235799999999999999
Q ss_pred HHHHHhCCC---ceEeecCCCCHHHHHHHHHHHHcC-CCeEE-EEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhc
Q 010884 275 SAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISS-RKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (498)
Q Consensus 275 ~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g-~~~vl-vaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRa 349 (498)
.+-|-+.-. ....+.|..++.+|.++.++|.++ .++|| .+|.+.|.|+|+-+.+.||+++-.|++..-+|.+-||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 998877533 344799999999999999999988 78875 6788999999999999999999999999999999999
Q ss_pred CCCCCCceEEEE
Q 010884 350 GRDQLPSKSLLY 361 (498)
Q Consensus 350 gR~g~~~~~~~~ 361 (498)
.|-|++..+-+|
T Consensus 1437 HRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVY 1448 (1549)
T ss_pred HhhcCceeeeee
Confidence 999987754443
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.58 E-value=2.6e-14 Score=148.35 Aligned_cols=309 Identities=19% Similarity=0.256 Sum_probs=175.2
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHHhH-hcCCCeEEEeCcHHHHHHHHHHHHHH---cCCceeEe
Q 010884 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA-LAKPGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g----~dvlv~apTG~GKTl~~~l~~-l~~~~~~lvl~P~~~L~~q~~~~l~~---~gi~~~~~ 108 (498)
..|||+|++||++..++ ...=+.|.+|+|||++.+-.+ -....++|+++|+++|..|..+.+.. +.+.+..+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aV 239 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAV 239 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEE
Confidence 46999999999998876 234677889999998876322 22348899999999999999998876 44444444
Q ss_pred cCCCCHHH-----------------HHHHHHHHhc--CCCcccEEEECcccccChhhHHHHHhh--hhcCCccEEEEecc
Q 010884 109 SSTQTMQV-----------------KTKIYEDLDS--GKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEA 167 (498)
Q Consensus 109 ~~~~~~~~-----------------~~~~~~~~~~--~~~~~~~l~~tpe~v~t~~~~~~l~~~--~~~~~l~~iViDEa 167 (498)
++...... ...+...... .....-++++|...+- .+... .....+++||-|||
T Consensus 240 cSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~------~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 240 CSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP------RIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH------HHHHHHHcCCCCccEEEecch
Confidence 44432111 1111111111 1122445555554332 22222 23456899999999
Q ss_pred ccccc---cCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH---HHHH----HHHhCCCCCeEEecCCCCCce-----
Q 010884 168 HCISS---WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV---QKDV----MESLCLQNPLVLKSSFNRPNL----- 232 (498)
Q Consensus 168 H~i~~---~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~---~~~i----~~~l~~~~~~~~~~~~~r~ni----- 232 (498)
|+-.. -|.+ ...+.++.. -........+.||||+.--. .... .....|.+..++-..|.|-+.
T Consensus 314 HRTtGa~~a~dd-~saFt~vHs-~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~ 391 (1518)
T COG4889 314 HRTTGATLAGDD-KSAFTRVHS-DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVE 391 (1518)
T ss_pred hccccceecccC-cccceeecC-cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHH
Confidence 98632 1110 000110000 00001234578999973211 0000 001112221112112222110
Q ss_pred -----EEEEEeecch-----------------hhHHHHHHHH------H-Hhc--------------CCccEEEEeCccc
Q 010884 233 -----FYEVRYKDLL-----------------DDAYADLCSV------L-KAN--------------GDTCAIVYCLERT 269 (498)
Q Consensus 233 -----~~~v~~~~~~-----------------~~~~~~l~~~------l-~~~--------------~~~~~IVf~~t~~ 269 (498)
.|.|...... .-.++....+ | ++. +..++|-||.+.+
T Consensus 392 rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~ 471 (1518)
T COG4889 392 RDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIK 471 (1518)
T ss_pred hhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhH
Confidence 1222111000 0011111111 1 111 1235789999998
Q ss_pred hHHHHHHHHHh-------------CCC--ceEeecCCCCHHHHHHHHHH---HHcCCCeEEEEeCccccccccCCccEEE
Q 010884 270 TCDELSAYLSA-------------GGI--SCAAYHAGLNDKARSSVLDD---WISSRKQVVVATVAFGMGIDRKDVRLVC 331 (498)
Q Consensus 270 ~~~~l~~~L~~-------------~g~--~~~~~h~~l~~~~R~~~~~~---f~~g~~~vlvaT~a~~~GiD~p~v~~VI 331 (498)
+.+++++.+.. .++ ++....|.|+..+|...++. |...+++||--...+++|||+|.++.||
T Consensus 472 tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi 551 (1518)
T COG4889 472 TSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI 551 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE
Confidence 88888877653 233 44566778999999554433 3456788998888999999999999999
Q ss_pred EeCCCCCHHHHHHHHhhcCCCC
Q 010884 332 HFNIPKSMEAFYQESGRAGRDQ 353 (498)
Q Consensus 332 ~~~~p~s~~~y~Q~~GRagR~g 353 (498)
++++-.|+.+.+|.+||+.|-.
T Consensus 552 Ff~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 552 FFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred EecCchhHHHHHHHHHHHHHhC
Confidence 9999999999999999999954
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=7.1e-13 Score=144.90 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=60.2
Q ss_pred HhcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHhHhc----CC--CeEEEeCcHHHHHHHHHHHHHHc
Q 010884 32 WHFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~~~l~~l~----~~--~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
-.|.|..+||.|.+.+..+. .++.+++.+|||+|||++.+.|+|. .+ .++++.+.|.+=+.|.++++++.
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 36899999999999887654 5789999999999999999888874 23 58999999999999999999884
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=1.6e-15 Score=137.92 Aligned_cols=156 Identities=26% Similarity=0.252 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecC
Q 010884 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~-------g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (498)
+||++|.+++..+.. .+.+++.||||+|||.++...+......+++++|+.+|++|+...+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 479999999999884 5789999999999998877444332229999999999999999999664433221110
Q ss_pred CCC-----------HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHH-------HHhhhhcCCccEEEEeccccccc
Q 010884 111 TQT-----------MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 111 ~~~-----------~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~-------l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
... ......... ........+++++...+........ ..........++||+||||....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKS--ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHH--HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred ccccccccccccccccccccccc--ccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 000 000000001 1112235666666655443221100 00112234478999999999754
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010884 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (498)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 204 (498)
-. .|..+ .. ++...+++||||+.
T Consensus 161 ~~-----~~~~i---~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 161 DS-----SYREI---IE-FKAAFILGLTATPF 183 (184)
T ss_dssp HH-----HHHHH---HH-SSCCEEEEEESS-S
T ss_pred HH-----HHHHH---Hc-CCCCeEEEEEeCcc
Confidence 11 13333 22 67788999999985
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=8.8e-13 Score=141.88 Aligned_cols=123 Identities=23% Similarity=0.226 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc
Q 010884 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (498)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~ 320 (498)
..|+..+.+-+.. ..+.|+||-+.|++..+.|+..|.+.|++...+++.....+-.-+.++=+.| .|-|||+++|+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCC
Confidence 4567776665543 3578999999999999999999999999988888876655555444443344 48999999999
Q ss_pred ccccC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 321 GIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 321 GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
|-|+. +==+||-...+.|..---|-.||+||.|.||.+..|++.+|-
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99986 224788899999999999999999999999999999998774
No 151
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.57 E-value=2.3e-13 Score=146.24 Aligned_cols=396 Identities=19% Similarity=0.212 Sum_probs=239.6
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHhHhcC--CCeEEEeCcHHHHHHHHHHHHHH-----cCCceeEec
Q 010884 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLS 109 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l~~l~~--~~~~lvl~P~~~L~~q~~~~l~~-----~gi~~~~~~ 109 (498)
.+.|.|.++++.+.+. .+++|.+|+|+|||.|+.+..+.. .++++++.|.-+.+..+.+.+.+ .|.....+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 3578999999988765 478999999999999998877753 57899999999988777666655 355566666
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHH------HH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY------RK 183 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~------~~ 183 (498)
+..+...+-.. .-++++.|||... .+. ....++++|.||.|.+..- .-+.| +.
T Consensus 1223 ge~s~~lkl~~---------~~~vii~tpe~~d------~lq---~iQ~v~l~i~d~lh~igg~---~g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1223 GETSLDLKLLQ---------KGQVIISTPEQWD------LLQ---SIQQVDLFIVDELHLIGGV---YGAVYEVICSMRY 1281 (1674)
T ss_pred CccccchHHhh---------hcceEEechhHHH------HHh---hhhhcceEeeehhhhhccc---CCceEEEEeeHHH
Confidence 65554433211 1456667766543 232 2334899999999998742 12222 23
Q ss_pred HHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC-CCc-eEEEEEeec--chh--------hHHHHHHH
Q 010884 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPN-LFYEVRYKD--LLD--------DAYADLCS 251 (498)
Q Consensus 184 l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~n-i~~~v~~~~--~~~--------~~~~~l~~ 251 (498)
+..... .++.++++|...+.. +++ ++.....++..+.. ||+ +...+...+ ..+ ..+..+..
T Consensus 1282 ia~q~~--k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1282 IASQLE--KKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHH--hheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 322222 278899999887664 222 66666556655443 332 222222221 111 11222222
Q ss_pred HHHhcCCccEEEEeCccchHHHHHHHHHhC----------------------CCceEeecCCCCHHHHHHHHHHHHcCCC
Q 010884 252 VLKANGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRK 309 (498)
Q Consensus 252 ~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (498)
.. ..++++|||+++++.|..+|..|-.. .++...=|-+++..+..-+...|..|.+
T Consensus 1355 ~a--~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i 1432 (1674)
T KOG0951|consen 1355 HA--GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAI 1432 (1674)
T ss_pred Hh--cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcE
Confidence 22 24678999999999998887665321 1122223889999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeC-----------CCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcc
Q 010884 310 QVVVATVAFGMGIDRKDVRLVCHFN-----------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 310 ~vlvaT~a~~~GiD~p~v~~VI~~~-----------~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
+|+|...- -+|+-.. ...||..+ .+-++....|+.|+|.| .|.|+++....+....+..+.+..
T Consensus 1433 ~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~l 1507 (1674)
T KOG0951|consen 1433 QVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPL 1507 (1674)
T ss_pred EEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcC
Confidence 99998777 7787664 34444332 34578999999999998 578999999888888777665543
Q ss_pred cCCCCcc-----hhhhhhhHHHHHHHHHHHHHhhcc--chhHHHHHhhhCCCCCcccCCCCCCCCCChhhhhHHHHHHHH
Q 010884 379 SKNSQSF-----STRERSSKKSISDFSQMVDYCEGS--GCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTS 451 (498)
Q Consensus 379 ~~~~~~~-----~~~~~~~~~~~~~~~~m~~~~~~~--~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~~~~~~~~~~~~~~ 451 (498)
+-..... ..+.+...+.+++-+.-++|.-.+ .||-.+--.||+-. =.....+...|.++.+
T Consensus 1508 Pves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~------------~v~~~~~S~~lS~lve 1575 (1674)
T KOG0951|consen 1508 PVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQ------------GVSHRHLSDFLSELVE 1575 (1674)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceeccc------------ccchhhhhhHHHHHHH
Confidence 3221100 011122222333333333333322 12222211222111 0123456677777777
Q ss_pred HHhhcCCccceee-ccCCCCCCCccccccccCC
Q 010884 452 AVLQKNHFSQIFI-SSQDMTDGGQYSEFWNRDD 483 (498)
Q Consensus 452 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 483 (498)
..+.....|+.+. ...|+ +..+++|-|..
T Consensus 1576 t~l~dl~~s~~i~v~dad~---~l~~Ias~y~i 1605 (1674)
T KOG0951|consen 1576 TTLNDLEESKCIEVDDEDD---SLGMIASYYYI 1605 (1674)
T ss_pred HHHHHhhcCceEEeecccc---ccchhhhhcee
Confidence 7765555555553 24444 36778888764
No 152
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.51 E-value=1.4e-12 Score=132.88 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=94.1
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCC-eEEEEeCccccccccCCccEEEEeCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNI 335 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~-~vlvaT~a~~~GiD~p~v~~VI~~~~ 335 (498)
.+.++++|+...+..+-+.++|...|+....+.|.....+|..+...|+..++ -+|++|.|.|.|||+-..+.||+|+.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 45678999999999999999999999999999999999999999999996554 56899999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCCceEEE
Q 010884 336 PKSMEAFYQESGRAGRDQLPSKSLL 360 (498)
Q Consensus 336 p~s~~~y~Q~~GRagR~g~~~~~~~ 360 (498)
.+++..-.|...||.|-|+...+.+
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceee
Confidence 9999999999999999998665333
No 153
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.42 E-value=1.2e-11 Score=131.79 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=95.5
Q ss_pred CccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCC--CeEEEEeCccccccccCCccEEEEeCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNI 335 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~vlvaT~a~~~GiD~p~v~~VI~~~~ 335 (498)
+.+++||....+..+-|..+|.-+|+..+.+.|...-++|+.++++|..+. ..+|++|...|.|||+-+.+.||+||-
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 567999999999999999999999999999999999999999999999654 457899999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 336 PKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 336 p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
.+++..-.|.--|+.|-|+-....+|
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEE
Confidence 99999999999999999987666555
No 154
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=1.2e-12 Score=113.00 Aligned_cols=136 Identities=29% Similarity=0.315 Sum_probs=88.2
Q ss_pred CCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcC---CceeEecCCCCHHHHHHHHHHHh
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~g---i~~~~~~~~~~~~~~~~~~~~~~ 125 (498)
+.+++.+|||+|||.++...+.. ..++++|++|+..|++++...+.... +............... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 46899999999999887665542 45889999999999999999888755 5555555544333222 111
Q ss_pred cCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecC
Q 010884 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 126 ~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 203 (498)
.....++++|++.+..... ........++++||||+|.+.... +.... ........+..+++++|||+
T Consensus 77 --~~~~~i~i~t~~~~~~~~~----~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 --SGKTDIVVGTPGRLLDELE----RLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --cCCCCEEEECcHHHHHHHH----cCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 1236777787775532111 111123458899999999987632 21111 12233345678899999996
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.38 E-value=3.9e-11 Score=122.75 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=79.0
Q ss_pred HHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHH--cCCCeE-EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHh
Q 010884 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 347 (498)
Q Consensus 271 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~--~g~~~v-lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~G 347 (498)
..-+...|.+.|.....+||....++|+.+++.|. +|..+| |++-.+.|.|+|+-+..++|..|+-|++.--.|..-
T Consensus 759 Lniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcD 838 (901)
T KOG4439|consen 759 LNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACD 838 (901)
T ss_pred HHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHH
Confidence 34455667777888999999999999999999998 455565 566788999999999999999999999999999999
Q ss_pred hcCCCCCCceEEEE
Q 010884 348 RAGRDQLPSKSLLY 361 (498)
Q Consensus 348 RagR~g~~~~~~~~ 361 (498)
|.-|.|+...++++
T Consensus 839 RIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 839 RIYRMGQKKDVFIH 852 (901)
T ss_pred HHHHhcccCceEEE
Confidence 99999998877665
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.36 E-value=3.6e-11 Score=118.46 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=92.6
Q ss_pred CccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcC-CCe-EEEEeCccccccccCCccEEEEeCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGIDRKDVRLVCHFNI 335 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-vlvaT~a~~~GiD~p~v~~VI~~~~ 335 (498)
..+.|||..-....+-+.-.|.+.|++|+-+-|+|++..|...++.|+++ .++ +||+-.|.|..+|+-....|+.+|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34678888888888888888999999999999999999999999999975 344 4788899999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCC--CceEEEEEccc
Q 010884 336 PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (498)
Q Consensus 336 p~s~~~y~Q~~GRagR~g~--~~~~~~~~~~~ 365 (498)
=+++.--.|...|..|-|+ |-..+.|+-..
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 9999999999999999997 44555555433
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.34 E-value=8.9e-11 Score=127.29 Aligned_cols=92 Identities=25% Similarity=0.243 Sum_probs=72.2
Q ss_pred EEEEeCccchHHHHHHHHHhC----C--CceEeecCCCCHHHHHHHHHHH----------------------Hc----CC
Q 010884 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW----------------------IS----SR 308 (498)
Q Consensus 261 ~IVf~~t~~~~~~l~~~L~~~----g--~~~~~~h~~l~~~~R~~~~~~f----------------------~~----g~ 308 (498)
++|-.++++.+-.+|..|-.. + +.+..||+..+...|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 578888898888888888754 2 3478899999888877766553 11 46
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC
Q 010884 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (498)
Q Consensus 309 ~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~ 355 (498)
..|+|||.+.+.|+|+ |.+++| .-|.++...+|++||+.|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccccC
Confidence 7899999999999997 566655 3467899999999999998863
No 158
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.20 E-value=1.5e-09 Score=122.77 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=94.6
Q ss_pred cEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcC--CCeEEEEeCccccccccCCccEEEEeCCCC
Q 010884 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (498)
Q Consensus 260 ~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~ 337 (498)
+++||.+.....+-+...|...++....++|+++.+.|..++..|.++ ..-++++|.+.|.|+|+-..+.||++|+.+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 799999999999999999999998899999999999999999999985 455778888999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCceEEEE
Q 010884 338 SMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 338 s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
++....|...||.|.|+...+.+|
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999988766555
No 159
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.20 E-value=2.8e-09 Score=113.77 Aligned_cols=327 Identities=19% Similarity=0.181 Sum_probs=197.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (498)
.+-++.+|.. |+=.+.+-.+.-...-+.-|.||=||||+..+|+.. .+..+.|++..--||.--..++..
T Consensus 71 Ea~~Rvlg~~---~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLGMR---HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcCCC---hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 3444555654 444556666666666799999999999999999863 467788888888888754444433
Q ss_pred cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH---HhhhhcCCccEEEEecccccc------
Q 010884 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS------ 171 (498)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~------ 171 (498)
+|+.+....+.....++...+. .++.|+|.--+.-.-....+ ..-.-...+.+.||||++-+.
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred cCCceeeccCCCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 7999999999998888887775 67788876655433222212 111112347888999998763
Q ss_pred ----ccCCCCh-HHHHHHHHHHHhCC---------CCCEEEEeecCChHH-----------------HHHHHH-----Hh
Q 010884 172 ----SWGHDFR-PSYRKLSSLRNYLP---------DVPILALTATAAPKV-----------------QKDVME-----SL 215 (498)
Q Consensus 172 ----~~g~~fr-~~~~~l~~l~~~~~---------~~~~l~lSAT~~~~~-----------------~~~i~~-----~l 215 (498)
.|...++ ..|..+..+...+. ....+.||-.--... ...+.. .+
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 3422221 33555544443221 111222222100000 000000 00
Q ss_pred CC------------------------------------------------------------------------------
Q 010884 216 CL------------------------------------------------------------------------------ 217 (498)
Q Consensus 216 ~~------------------------------------------------------------------------------ 217 (498)
..
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~ 379 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE 379 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh
Confidence 00
Q ss_pred -----CCCeEEecCCCCCceEEEEEee--cchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEee
Q 010884 218 -----QNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (498)
Q Consensus 218 -----~~~~~~~~~~~r~ni~~~v~~~--~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~ 288 (498)
.+-.++..+.++|.+....... .....|+..+.+.+.. ..+.|+||-+.+.+..+.+.+.|.+.|++-..+
T Consensus 380 EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VL 459 (822)
T COG0653 380 EFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVL 459 (822)
T ss_pred hhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceee
Confidence 0111112233334332211110 1123566666655543 357899999999999999999999999998777
Q ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC---Ccc--------EEEEeCCCCCHHHHHHHHhhcCCCCCCce
Q 010884 289 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR--------LVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (498)
Q Consensus 289 h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p---~v~--------~VI~~~~p~s~~~y~Q~~GRagR~g~~~~ 357 (498)
.+.-...+-..+.+.-+.| -|=|||+++|+|-|+. +.. +||-..--.|-.---|--||+||.|-+|.
T Consensus 460 NAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~ 537 (822)
T COG0653 460 NAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGS 537 (822)
T ss_pred ccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcch
Confidence 7766655544444443333 4779999999999974 211 35544444455555699999999999999
Q ss_pred EEEEEccchH
Q 010884 358 SLLYYGMDDR 367 (498)
Q Consensus 358 ~~~~~~~~d~ 367 (498)
+..|++.+|-
T Consensus 538 S~F~lSleD~ 547 (822)
T COG0653 538 SRFYLSLEDD 547 (822)
T ss_pred hhhhhhhHHH
Confidence 9988887664
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.13 E-value=3.8e-08 Score=99.45 Aligned_cols=241 Identities=15% Similarity=0.191 Sum_probs=160.8
Q ss_pred EECcccccChhhHHHHHh--------hhhcCCccEEEEeccccccc--cCCCChHHHH------------HHHHHHHhCC
Q 010884 135 YVTPELTATPGFMSKLKK--------IHSRGLLNLVAIDEAHCISS--WGHDFRPSYR------------KLSSLRNYLP 192 (498)
Q Consensus 135 ~~tpe~v~t~~~~~~l~~--------~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~------------~l~~l~~~~~ 192 (498)
|.+..++++|--+..+.. ...+..+.++|||.||.+.- |.| ....+. .+.+++..+-
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~L 208 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYL 208 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 455567778754443322 22245588999999998753 443 111110 1111111110
Q ss_pred ------CCCEEEEeecCChHHHHHHHHHhC-CCCCeEEecC-----------CCCCceEEEEEeec---chhhHHHH---
Q 010884 193 ------DVPILALTATAAPKVQKDVMESLC-LQNPLVLKSS-----------FNRPNLFYEVRYKD---LLDDAYAD--- 248 (498)
Q Consensus 193 ------~~~~l~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~-----------~~r~ni~~~v~~~~---~~~~~~~~--- 248 (498)
-+|.|++|+..+++....+...+. ....+.+... ...+.++..+.... ..+..++.
T Consensus 209 dg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred cCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 268999999999998765554222 1111111111 11222333322211 11223332
Q ss_pred -HHHHHH-hcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc--ccccccc
Q 010884 249 -LCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDR 324 (498)
Q Consensus 249 -l~~~l~-~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a--~~~GiD~ 324 (498)
++..+. ....+.+|||++|--+--.|..+|++.++..+.+|-..+.++-...-..|..|+.+||+-|.- +=+-..+
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 333344 445677999999999999999999999999999999999999999999999999999999974 4556778
Q ss_pred CCccEEEEeCCCCCHHHHHHHHhhcCCCCC------CceEEEEEccchHHHHHHHHHh
Q 010884 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQL------PSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~------~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
.+|+.||.|++|..+.-|-..++-.+.... ...|.++|+.-|.-+++.|+..
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 899999999999999888777755554433 5789999999999999888764
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.11 E-value=5.4e-09 Score=110.92 Aligned_cols=282 Identities=16% Similarity=0.166 Sum_probs=169.2
Q ss_pred CEEEEcCCCchHHHHHHHhH---h-cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCc
Q 010884 55 DCFCLMPTGGGKSMCYQIPA---L-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~---l-~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (498)
-.++.+|.|+|||....-+. + .....+|+|+-.++|+.+...+++..++............ .+ . ...
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~-------~i-~-~~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDY-------II-D-GRP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccc-------cc-c-ccc
Confidence 35789999999996543332 1 2468999999999999999999998776422222111100 00 0 011
Q ss_pred ccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHH-------HHHHHHHHHhCCCCCEEEEeecC
Q 010884 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS-------YRKLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 131 ~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~-------~~~l~~l~~~~~~~~~l~lSAT~ 203 (498)
++-+.++.+.+. ++.. ...+..++|||||+-.+.. +-|-+. +..+..+... ...+|++-||+
T Consensus 122 ~~rLivqIdSL~------R~~~-~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~l 190 (824)
T PF02399_consen 122 YDRLIVQIDSLH------RLDG-SLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADL 190 (824)
T ss_pred cCeEEEEehhhh------hccc-ccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCC
Confidence 344555444331 1111 1133478999999987654 223233 3334444443 44589999999
Q ss_pred ChHHHHHHHHHhCCCCCeEEecCCCCCce-----EEEEE-----------e-----------------------ecchhh
Q 010884 204 APKVQKDVMESLCLQNPLVLKSSFNRPNL-----FYEVR-----------Y-----------------------KDLLDD 244 (498)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~r~ni-----~~~v~-----------~-----------------------~~~~~~ 244 (498)
.....+-+...-+-.+..++...+..++. .+.-. . ......
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 99988755553322222233222111110 00000 0 000011
Q ss_pred HHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccccccc
Q 010884 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (498)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~ 324 (498)
-+..|..-|. .+.++-||+.|...++.+++.....+.++..+++.-+..+- +.| ++++|++=|.+.+.|+++
T Consensus 271 F~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 271 FFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred HHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEecc
Confidence 2223333333 35667899999999999999999999999999887766632 334 678999999999999998
Q ss_pred CCccE--EEEeCCC----CCHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 325 KDVRL--VCHFNIP----KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 325 p~v~~--VI~~~~p----~s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
....+ |.-|=-| .++.+.+|++||+-.-. ....++|++..
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 65433 3333112 35677899999996554 56677777654
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.09 E-value=1e-08 Score=108.21 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=91.3
Q ss_pred CccEEEEeCccchHHHHHHHHHh----------------------CCCceEeecCCCCHHHHHHHHHHHHcC---CC-eE
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISS---RK-QV 311 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~-~v 311 (498)
+.+.|||..+-...+-+..+|.. .|.....+.|.....+|..+.+.|.+- .. -.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 56799999999999999888863 144567899999999999999999852 22 37
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
||+|.|.+.|||+-....||+||..|++.--.|-+=|+-|.|+..-+++|
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999999999999999999999999999999999999999998888876
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.07 E-value=6.1e-10 Score=109.53 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=95.1
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCchHHHHHHHhHh--c-C-----CCeEEEeCcHHHHHHHHHHHHHH
Q 010884 42 KQLDAIQAVL-------------SGRDCFCLMPTGGGKSMCYQIPAL--A-K-----PGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 42 ~Q~~~i~~i~-------------~g~dvlv~apTG~GKTl~~~l~~l--~-~-----~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
+|.+++..++ ..+.+++...+|+|||+..+..+. . . ...+|||+|. +++.+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5788887663 224678888999999977654332 1 1 1259999999 888999999999
Q ss_pred cC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECccccc---ChhhHHHHHhhhhcCCccEEEEecccccccc
Q 010884 101 KG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 101 ~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~---t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (498)
+. .++....+.. ..............++++|.+.+. .+.....+.. ..+++|||||+|.+...
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 65 2333333333 111122333445788888888776 2222333333 23899999999999654
Q ss_pred CCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCC
Q 010884 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 219 (498)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~ 219 (498)
+. ........+....+++||||+......++...+.+-.
T Consensus 150 ~s-------~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~ 188 (299)
T PF00176_consen 150 DS-------KRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLN 188 (299)
T ss_dssp TS-------HHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHC
T ss_pred cc-------cccccccccccceEEeeccccccccccccccchheee
Confidence 42 2222333344667899999998877677666555433
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.96 E-value=1.9e-07 Score=104.69 Aligned_cols=281 Identities=19% Similarity=0.181 Sum_probs=156.1
Q ss_pred CCEEEEcCCCchHHHHHHHhH-----hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~-----l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (498)
+..+++--||||||++....+ +...+.+++|+-.+.|-.|..+.+.+++..........+..... ..+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk---~~l~~~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELK---ELLEDG- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHH---HHHhcC-
Confidence 458999999999998754332 23578899999999999999999998765433322222333322 233333
Q ss_pred CcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH
Q 010884 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (498)
Q Consensus 129 ~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 208 (498)
.-+++++|...+.....-. ......++--+||+||||+ ++.| ..-..+...+++...++||+||....-
T Consensus 350 -~~~ii~TTIQKf~~~~~~~--~~~~~~~~~ivvI~DEaHR-SQ~G-------~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 350 -KGKIIVTTIQKFNKAVKED--ELELLKRKNVVVIIDEAHR-SQYG-------ELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred -CCcEEEEEecccchhhhcc--cccccCCCcEEEEEechhh-cccc-------HHHHHHHHHhccceEEEeeCCcccccc
Confidence 3578888877665432111 0001122234799999998 6666 233445777888999999999854322
Q ss_pred HHH-HHHhCCC-CCeEEec----CCCCCceEEEEE-eecchh--------------------------------------
Q 010884 209 KDV-MESLCLQ-NPLVLKS----SFNRPNLFYEVR-YKDLLD-------------------------------------- 243 (498)
Q Consensus 209 ~~i-~~~l~~~-~~~~~~~----~~~r~ni~~~v~-~~~~~~-------------------------------------- 243 (498)
..- ....+-. ....+.. +... .+.|..+ ..+...
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 497 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVL-PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAML 497 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCcee-eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcc
Confidence 210 0001100 0000000 0001 2222222 100000
Q ss_pred -----hHHHHHHHHHH--hcCCccEEEEeCccchHHHHHHHHHhCCC---------c-eEe-------------ecCCCC
Q 010884 244 -----DAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAGGI---------S-CAA-------------YHAGLN 293 (498)
Q Consensus 244 -----~~~~~l~~~l~--~~~~~~~IVf~~t~~~~~~l~~~L~~~g~---------~-~~~-------------~h~~l~ 293 (498)
.....+..... ...+.++.+.+.+++.+..+++....... . +.. .|....
T Consensus 498 ~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 577 (962)
T COG0610 498 AVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLK 577 (962)
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHH
Confidence 00011111111 22345677777787755555544432100 0 000 122222
Q ss_pred HHHHHHHHHHH--HcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 010884 294 DKARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (498)
Q Consensus 294 ~~~R~~~~~~f--~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (498)
. .+.....+| .....++||.++++-.|.|.|-...+. .|-|----..+|.+-|+.|.
T Consensus 578 ~-~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 D-EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred H-HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 2 223333443 256789999999999999999766554 67778888999999999994
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.92 E-value=2.3e-10 Score=96.72 Aligned_cols=133 Identities=18% Similarity=0.147 Sum_probs=72.6
Q ss_pred cCCCEEEEcCCCchHHHHHHH----hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcC
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l----~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (498)
+|+-.++-+.+|+|||--.+. -.+.+..++||+.|||.++.+..+.|+...+ .+-....... ..+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~--~~~t~~~~~~---------~~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPV--RFHTNARMRT---------HFG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSE--EEESTTSS-------------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCc--ccCceeeecc---------ccC
Confidence 344567889999999964322 2456789999999999999999999976543 2222221110 001
Q ss_pred CCcccEEEECcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChH
Q 010884 128 KPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (498)
Q Consensus 128 ~~~~~~l~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 206 (498)
. ++..+.+.. +...+.+-.....+++||+||||....+...+|..+..+ ..-....+|++|||++..
T Consensus 72 ~--------~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~----~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 S--------SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLREL----AESGEAKVIFMTATPPGS 139 (148)
T ss_dssp S--------SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHH----HHTTS-EEEEEESS-TT-
T ss_pred C--------CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHh----hhccCeeEEEEeCCCCCC
Confidence 1 111333443 333344445566799999999998765443333322222 222456799999999875
Q ss_pred H
Q 010884 207 V 207 (498)
Q Consensus 207 ~ 207 (498)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.70 E-value=1.5e-07 Score=89.51 Aligned_cols=133 Identities=21% Similarity=0.229 Sum_probs=94.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (498)
.+.++.+|+. |++.|.-++=.+..|+ ++.+.||-|||++..+|+.. .+..+-|++....|+..-.+.+..
T Consensus 68 ea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 68 EAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 4455667775 7789988888887777 99999999999998887753 577888999999999877777554
Q ss_pred cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh---hhhcCCccEEEEecccccc
Q 010884 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~ 171 (498)
+|+.+...........+...+. .+|+|+|..-+.-.-+...+.. ......+.++||||+|.+.
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7999999998888777666664 6799998876654333333321 1113568999999999874
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.57 E-value=3.3e-07 Score=89.43 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=60.2
Q ss_pred hcCCCCCCHHHHHHHH----HHHcCCCEEEEcCCCchHHHHHHHhHhc----CCC-----eEEEeCcHHHHHHHHHHHHH
Q 010884 33 HFGHAQFRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 33 ~fg~~~~~~~Q~~~i~----~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~-----~~lvl~P~~~L~~q~~~~l~ 99 (498)
.|.|. +||.|.+.+. .+..|.++++.||||+|||++|++|++. ... +++++++|.++..+....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37887 4999999554 4557889999999999999999999873 222 79999999999988888888
Q ss_pred HcCCceeEecC
Q 010884 100 EKGIAGEFLSS 110 (498)
Q Consensus 100 ~~gi~~~~~~~ 110 (498)
+......++.+
T Consensus 83 ~~~~~~~~~~~ 93 (289)
T smart00488 83 KLMQKVEYESD 93 (289)
T ss_pred hcccccceecc
Confidence 76544333433
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.57 E-value=3.3e-07 Score=89.43 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=60.2
Q ss_pred hcCCCCCCHHHHHHHH----HHHcCCCEEEEcCCCchHHHHHHHhHhc----CCC-----eEEEeCcHHHHHHHHHHHHH
Q 010884 33 HFGHAQFRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 33 ~fg~~~~~~~Q~~~i~----~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~-----~~lvl~P~~~L~~q~~~~l~ 99 (498)
.|.|. +||.|.+.+. .+..|.++++.||||+|||++|++|++. ... +++++++|.++..+....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37887 4999999554 4557889999999999999999999873 222 79999999999988888888
Q ss_pred HcCCceeEecC
Q 010884 100 EKGIAGEFLSS 110 (498)
Q Consensus 100 ~~gi~~~~~~~ 110 (498)
+......++.+
T Consensus 83 ~~~~~~~~~~~ 93 (289)
T smart00489 83 KLMQKVEYESD 93 (289)
T ss_pred hcccccceecc
Confidence 76544333433
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.7e-06 Score=84.51 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=97.5
Q ss_pred CccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc--cccccccCCccEEEEeCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNI 335 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a--~~~GiD~p~v~~VI~~~~ 335 (498)
...++||.++.-+--++..++++.++..+.+|--.+...-.+.-+-|..|...||+-|.- +-+--++.+|+.||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 445799999999999999999999988888877777776677778899999999999975 556788999999999999
Q ss_pred CCCHHHH---HHHHhhcCCCC----CCceEEEEEccchHHHHHHHHHh
Q 010884 336 PKSMEAF---YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 336 p~s~~~y---~Q~~GRagR~g----~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
|..+.-| +-+++|+.-.| ....|.++|+.-|...++.++..
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 9998766 56667765444 34579999999998888877653
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.39 E-value=2.1e-06 Score=90.91 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=87.4
Q ss_pred CccEEEEeCccchHHHHHHHHHhC-------CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEE
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~V 330 (498)
.+-++||.+-....-.|..+|... .+.....|+-+...+...+.+....|..++|++|+.....|-+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 355788888888877777777643 3567889999988888888888888999999999999999999999998
Q ss_pred EEeCCCC------------------CHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 331 CHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 331 I~~~~p~------------------s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
|..+.-. |..+..|+.||+||. ++|.|..+.+..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 8665432 667789999999998 589998887643
No 171
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.37 E-value=1.3e-06 Score=78.04 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=76.5
Q ss_pred HHHHHhcCCccEEEEeCccchHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC--ccccccccC
Q 010884 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (498)
Q Consensus 250 ~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~--a~~~GiD~p 325 (498)
.++++..+ +.++||++|.+..+.+.+.+...+. ....+.- +..++..+++.|++++-.||+++. .+..|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34555554 6799999999999999999987542 1122222 356788899999999999999999 999999999
Q ss_pred C--ccEEEEeCCCC----CH--------------------------HHHHHHHhhcCCCCCCceEEEEEcc
Q 010884 326 D--VRLVCHFNIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 326 ~--v~~VI~~~~p~----s~--------------------------~~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
+ ++.||..++|. ++ ....|.+||+-|....--++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 6 88999999884 11 1237889999998765555555554
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.32 E-value=1.2e-05 Score=88.48 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=42.3
Q ss_pred CCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCC
Q 010884 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (498)
Q Consensus 308 ~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (498)
..+.|++-+|+..|.|-|+|=.++-..-..|...-.|.+||.-|-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999899999999999999994
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.31 E-value=4.9e-05 Score=83.42 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=52.0
Q ss_pred ccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHH-HHHhCCCCCEEEEeecCChH---
Q 010884 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPK--- 206 (498)
Q Consensus 131 ~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~-l~~~~~~~~~l~lSAT~~~~--- 206 (498)
-.++++||.++.... |........+..|||||||++..-. .|.-+.+ ++...+..-+.+|||.|...
T Consensus 8 ggi~~~T~rIl~~Dl----L~~ri~~~~itgiiv~~Ahr~~~~~-----~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g 78 (814)
T TIGR00596 8 GGIFSITSRILVVDL----LTGIIPPELITGILVLRADRIIESS-----QEAFILRLYRQKNKTGFIKAFSDNPEAFTMG 78 (814)
T ss_pred CCEEEEechhhHhHH----hcCCCCHHHccEEEEeecccccccc-----cHHHHHHHHHHhCCCcceEEecCCCcccccc
Confidence 468888888776543 3444455568999999999986521 1233333 34444555689999998763
Q ss_pred --HHHHHHHHhCCCC
Q 010884 207 --VQKDVMESLCLQN 219 (498)
Q Consensus 207 --~~~~i~~~l~~~~ 219 (498)
-...+++.|++..
T Consensus 79 ~~~l~~vmk~L~i~~ 93 (814)
T TIGR00596 79 FSPLETKMRNLFLRH 93 (814)
T ss_pred hHHHHHHHHHhCcCe
Confidence 3566677776654
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.23 E-value=0.00034 Score=73.56 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=93.5
Q ss_pred ccEEEEeCccchHHHHHHHHHhCCC------------------ceEeecCCCCHHHHHHHHHHHHcC---CCeEEEEeCc
Q 010884 259 TCAIVYCLERTTCDELSAYLSAGGI------------------SCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVA 317 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~g~------------------~~~~~h~~l~~~~R~~~~~~f~~g---~~~vlvaT~a 317 (498)
.++|||..+.-..+.+.+.|.+..+ +...+.|..+..+|+.++++|.+. ..-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 4578888888888888888876422 234678888999999999999842 2458899999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHH
Q 010884 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (498)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~ 373 (498)
...|||+-....+|.|+.-+++.--.|.+-|+-|.|+...|++|=--.|...-+.|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 99999998888899999999999999999999999999999998665554444433
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.03 E-value=5.2e-07 Score=97.04 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHH----cCCceeE
Q 010884 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE----KGIAGEF 107 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~-g~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~l~~----~gi~~~~ 107 (498)
.+.|.|.+++..+.. ..++++.+|||+|||++|.+.... ...++++++|..+|+..-++.+.+ -|++..-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 455677666655433 357889999999999999876643 257899999999998877666655 3566665
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
..+....... .+ .+..++++|||...--.+ .+....-...++++|+||.||+.+
T Consensus 1007 ~tgd~~pd~~-----~v----~~~~~~ittpek~dgi~R--sw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1007 LTGDVTPDVK-----AV----READIVITTPEKWDGISR--SWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred ccCccCCChh-----he----ecCceEEcccccccCccc--cccchhhhccccceeecccccccC
Confidence 5555433311 11 236788888886543211 111112223478899999999876
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.98 E-value=8.9e-05 Score=71.07 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEcCCCchHHHHH--HH-hHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 38 QFRDKQLDAIQAVLS----------GRDCFCLMPTGGGKSMCY--QI-PALAK-PGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~----------g~dvlv~apTG~GKTl~~--~l-~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.+...|.|++-...+ +.-+++--.||.||--.. ++ -...+ ..+.|+++.+..|..|-.+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 467899998854431 234555559999998432 22 22234 44699999999999999999999876
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccCh--------hhHHHHHhhhhcCCccEEEEeccccccccCC
Q 010884 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~--------~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (498)
....+......... . .......++++|.-.+... .++..+.+......=.+||+||||....-..
T Consensus 117 ~~i~v~~l~~~~~~-----~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-----D--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-----c--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 64333322211100 0 0111345777777654332 2333333332223345899999999865321
Q ss_pred C---ChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 176 ~---fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
. -...=.....|.+.+|+.+++.+|||...+.
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 0 0111134556778899999999999976543
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.91 E-value=0.00071 Score=72.29 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCC--CCCceE-----------EEEEccchHHHHHHH
Q 010884 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD--QLPSKS-----------LLYYGMDDRRRMEFI 373 (498)
Q Consensus 307 g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~--g~~~~~-----------~~~~~~~d~~~~~~~ 373 (498)
...+.|++-.++-.|.|-|||=.++-.....|..+=.|++||.-|- .+.|.- .++++.++...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999993 333432 245566666666666
Q ss_pred HHhc
Q 010884 374 LSKN 377 (498)
Q Consensus 374 ~~~~ 377 (498)
.++.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5543
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.88 E-value=0.00013 Score=75.57 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=65.5
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH--hH--hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 010884 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--PA--LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (498)
Q Consensus 33 ~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l--~~--l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (498)
.+|+.++..-|..|+.+++...-.++++|+|+|||.+-.- .- -...+.+||++|+.--+.|..+.+.+.|+++.-+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 3688999999999999999999999999999999964321 11 1357899999999999999999999999887766
Q ss_pred cCC
Q 010884 109 SST 111 (498)
Q Consensus 109 ~~~ 111 (498)
.+.
T Consensus 485 ~ak 487 (935)
T KOG1802|consen 485 CAK 487 (935)
T ss_pred ehh
Confidence 543
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.84 E-value=6.5e-05 Score=69.00 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHH--hHh-cCCCeEEEeCcHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQV 95 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~--dvlv~apTG~GKTl~~~l--~~l-~~~~~~lvl~P~~~L~~q~~ 95 (498)
+|++.|.+++..++.+. -+++.+|.|+|||.+... .++ ..+..+++++||...+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~ 63 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELR 63 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHH
Confidence 37899999999997654 467789999999964321 222 24678999999988776533
No 180
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.69 E-value=8.6e-05 Score=69.85 Aligned_cols=63 Identities=33% Similarity=0.432 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchHHH--HHHHhHh---------cCCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSM--CYQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~d-vlv~apTG~GKTl--~~~l~~l---------~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
++.+.|.+|+..++.... .++.||+|+|||. +.++..+ ...+.+||++|+.+-+.+.+..+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 9999999999993 3333333 4578899999999999999999877
No 181
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.59 E-value=0.00014 Score=74.86 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 010884 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~d-vlv~apTG~GKTl~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
..+.+-|.+|+......++ .++++|+|+|||.+... -++.++.++||+.|+..-+...++++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4577899999999888865 67899999999955432 345678999999999999999988755
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.55 E-value=0.00018 Score=65.84 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHH
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIAL 90 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L 90 (498)
...++.|..++++++...-+++.+|.|+|||+.++..++. ...+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 4567899999999998888999999999999887765543 23577888888754
No 183
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.55 E-value=0.0005 Score=74.30 Aligned_cols=127 Identities=26% Similarity=0.230 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHH--HHHhHh-cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCC
Q 010884 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMC--YQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~d-vlv~apTG~GKTl~--~~l~~l-~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (498)
.+..-|++|+..++..+| .++.+-+|+|||.+ .++-+| ..++++|+.+=|.+-+......|+..++...-+.+...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 477899999998888775 57889999999954 344444 46788899999998889999999999888766655543
Q ss_pred HHHHHHH-----------HHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 114 MQVKTKI-----------YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 114 ~~~~~~~-----------~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
.....+. +.++...-.+..++.+|.--+..|-| ..+.+++.|||||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--------~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--------VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--------hccccCEEEEcccccccc
Confidence 3221111 11222222234555555444444433 234489999999999876
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=97.53 E-value=0.00023 Score=54.35 Aligned_cols=53 Identities=28% Similarity=0.328 Sum_probs=36.2
Q ss_pred HHHHHHcCCC-EEEEcCCCchHHHHHH-H-hH-hcC----CCeEEEeCcHHHHHHHHHHHH
Q 010884 46 AIQAVLSGRD-CFCLMPTGGGKSMCYQ-I-PA-LAK----PGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 46 ~i~~i~~g~d-vlv~apTG~GKTl~~~-l-~~-l~~----~~~~lvl~P~~~L~~q~~~~l 98 (498)
++...+.+.. ++|.+|+|+|||.+.. . .. +.. +..++|++|++..+.+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4553333545 4559999999994432 1 11 222 678999999999998887777
No 185
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.51 E-value=0.001 Score=57.47 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCC------ceEeecCCCCHHHHHHHHHHHHcCC-CeEEEEeCccccccccCC--ccEEEEeCCCC----C
Q 010884 272 DELSAYLSAGGI------SCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPK----S 338 (498)
Q Consensus 272 ~~l~~~L~~~g~------~~~~~h~~l~~~~R~~~~~~f~~g~-~~vlvaT~a~~~GiD~p~--v~~VI~~~~p~----s 338 (498)
+.++..+...+. ....+.-+.+..+...+++.|+... ..||++|..+++|||+|+ .+.||..++|. +
T Consensus 5 ~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d 84 (141)
T smart00492 5 ESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDS 84 (141)
T ss_pred HHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCC
Confidence 444555544433 1233444455556788899998654 379999988999999997 57899988874 1
Q ss_pred ---------------------------HHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 339 ---------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 339 ---------------------------~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
.....|.+||+-|....--++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 85 PILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1223678889988765444555544
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.47 E-value=0.0018 Score=61.19 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=41.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh---cC--CCeEEEeCcHHHH
Q 010884 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIAL 90 (498)
Q Consensus 34 fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l---~~--~~~~lvl~P~~~L 90 (498)
+++...+..|...+.++..+.-+++.+|+|+|||+.....++ .. -.++++.-|....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 456667789999999998888889999999999976554333 22 2446666677654
No 187
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.44 E-value=0.001 Score=57.53 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCC---ceEeecCCCCHHHHHHHHHHHHcCCC---eEEEEeCc--cccccccCC--ccEEEEeCCCC---
Q 010884 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPK--- 337 (498)
Q Consensus 271 ~~~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g~~---~vlvaT~a--~~~GiD~p~--v~~VI~~~~p~--- 337 (498)
.+.+++.+.+.+. ....+.-+....+...+++.|++..- .||+++.. +++|||+|+ .+.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3455555555432 12222222333344678888886433 69998887 999999998 68899998874
Q ss_pred -C---------------------------HHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 338 -S---------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 338 -s---------------------------~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
+ +....|.+||+-|....--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1223788899999876554555554
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.37 E-value=0.0018 Score=71.20 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=46.1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHhHhcC-C--CeEEEeCcHHHHHH
Q 010884 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALME 92 (498)
Q Consensus 30 l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~--~l~~l~~-~--~~~lvl~P~~~L~~ 92 (498)
+...+|+ .+++.|++|+..+..++-+++.++.|+|||.+. ++-++.. + ..+++++||-.-+.
T Consensus 316 ~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 316 VEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 3444564 589999999999998888999999999999643 2333333 2 46788899976654
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.37 E-value=0.0016 Score=69.84 Aligned_cols=76 Identities=21% Similarity=0.109 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCCC-CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHhHhcC-----CCeEEEeCcHHHHHHHHH
Q 010884 24 EALVKLLRWHFGHAQ-FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQV 95 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~-~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~--~l~~l~~-----~~~~lvl~P~~~L~~q~~ 95 (498)
..+...|.+.|+... ..++|++|+...+.++-+++.+++|+|||.+. ++..+.. ...++++.||.--+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 567777888887642 35899999999999999999999999999653 2333321 246888899987666555
Q ss_pred HHHH
Q 010884 96 IGLK 99 (498)
Q Consensus 96 ~~l~ 99 (498)
+.+.
T Consensus 217 e~~~ 220 (615)
T PRK10875 217 ESLG 220 (615)
T ss_pred HHHH
Confidence 5443
No 190
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.34 E-value=8.2e-05 Score=79.10 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=56.1
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHH---cCCCeEEEEeCccccc
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI---SSRKQVVVATVAFGMG 321 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~---~g~~~vlvaT~a~~~G 321 (498)
.+.+++||..-.+..+-+..++...+ ....+.|.....+|+....+|. +.....|.+|.+.|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 46779999999999999999999888 8889999999999999999998 3456789999998876
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.34 E-value=0.00077 Score=67.96 Aligned_cols=46 Identities=17% Similarity=0.022 Sum_probs=34.0
Q ss_pred CEEEEcCCCchHHHHHHHh--Hh---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQIP--AL---AKPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~--~l---~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
-++|.+..|||||+..+-- .+ .....++++++..+|+......+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 3688999999999765422 22 3467889999999998766666654
No 192
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.27 E-value=0.001 Score=56.45 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=12.4
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
+++-+++.||+|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3457899999999999654
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.18 E-value=0.0044 Score=66.30 Aligned_cols=70 Identities=19% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHhHhcC------CCeEEEeCcHHHHHHHHHHHH
Q 010884 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~--~l~~l~~------~~~~lvl~P~~~L~~q~~~~l 98 (498)
.+.+.|+...-.++|++|+..++.++-+++.++.|+|||.+. ++..+.. ...+++.+||---+....+.+
T Consensus 136 ~l~~~~~~~~~~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~ 213 (586)
T TIGR01447 136 ILENLFPLLNEQNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESL 213 (586)
T ss_pred HHHHhhccccccHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHH
Confidence 344444433234899999999999999999999999999643 2333321 146899999976665544444
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.02 Score=58.00 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCEEEEcCCCchHHHHHH-HhH-hc-----CCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEecCCCCHHHHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ-IPA-LA-----KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYED 123 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~-l~~-l~-----~~~~~lvl~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~ 123 (498)
+.+++++|||+|||.+.. +.+ +. .+..+.+++ +.+.-+.+|...+.. +|++...... .
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~--------- 242 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F--------- 242 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H---------
Confidence 457889999999997653 222 21 233444443 445555555555444 5555322210 0
Q ss_pred HhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CC-CCEEEEee
Q 010884 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PD-VPILALTA 201 (498)
Q Consensus 124 ~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~-~~~l~lSA 201 (498)
..+...+.. ....++|+||++.+... + ...+.++..+.... +. -.++.++|
T Consensus 243 --------------------~~l~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVlsa 295 (388)
T PRK12723 243 --------------------KDLKEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred --------------------HHHHHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 011111221 23478999999998642 1 11234555555543 23 46799999
Q ss_pred cCChHHHHHHHHHhC
Q 010884 202 TAAPKVQKDVMESLC 216 (498)
Q Consensus 202 T~~~~~~~~i~~~l~ 216 (498)
|.......++.....
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999888777776654
No 195
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.96 E-value=0.0034 Score=68.05 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHH--H-hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 010884 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~--l-~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (498)
..+.+.|.+|+..++.. ..+++.+|+|+|||.+.. + .++..+.++||++|+..-+.+..+.+...++.+..+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg 232 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLG 232 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeC
Confidence 35788999999998877 567899999999995432 2 2344577999999999999999999988666555444
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.94 E-value=0.0036 Score=61.16 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcHHHHHH
Q 010884 30 LRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALME 92 (498)
Q Consensus 30 l~~~fg~~~~~~~Q~~~i~~i~~g~--dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~~~L~~ 92 (498)
-++.||+....-.|.-|+..++... =|.+.++-|+|||+.++...+. ...++||.=|+..+-+
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 3478999988889999999998764 4677889999999877766664 2467888888877653
No 197
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.93 E-value=0.0079 Score=51.43 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
++.+++.+|+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999644
No 198
>PRK08181 transposase; Validated
Probab=96.90 E-value=0.0096 Score=57.28 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=32.3
Q ss_pred CHHHHHHHH----HHHcCCCEEEEcCCCchHHHHH-HH-hHhcCCCeEEEeCcHHHHHHH
Q 010884 40 RDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCY-QI-PALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 40 ~~~Q~~~i~----~i~~g~dvlv~apTG~GKTl~~-~l-~~l~~~~~~lvl~P~~~L~~q 93 (498)
.+.|..++. .+-.++++++.+|+|+|||-.. .+ -.+...+..++..+...|+.+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 456665553 2336678999999999999432 22 122333444455556666654
No 199
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.90 E-value=0.0033 Score=67.64 Aligned_cols=73 Identities=26% Similarity=0.261 Sum_probs=52.8
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHhHhc-----------------C-----------
Q 010884 30 LRWHFGHAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALA-----------------K----------- 77 (498)
Q Consensus 30 l~~~fg~~~~~~~Q~~~i~~i~~----g~dvlv~apTG~GKTl~~~l~~l~-----------------~----------- 77 (498)
+.-.|.|. ++|.|...+..++. ..+.++..|||+||||+.+...|. +
T Consensus 14 v~V~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 14 VPVEFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred ceeeccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 34456665 68999998877664 468999999999999876644431 0
Q ss_pred -----------------CCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 78 -----------------PGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 78 -----------------~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.+++++-+-|.+=+.|.++++++.+.
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 13466667777777899999988543
No 200
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.83 E-value=0.0046 Score=59.16 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCeEEEEeCccccccccCC--------ccEEEEeCCCCCHHHHHHHHhhcCCCCCCc
Q 010884 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (498)
Q Consensus 299 ~~~~~f~~g~~~vlvaT~a~~~GiD~p~--------v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~ 356 (498)
...+.|++|+..|+|-|.+.+.||-+.. -|+-|...+|+|....+|..||+.|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4467899999999999999999998763 356778899999999999999999999854
No 201
>PRK08727 hypothetical protein; Validated
Probab=96.78 E-value=0.0091 Score=56.42 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=13.0
Q ss_pred CCEEEEcCCCchHHH
Q 010884 54 RDCFCLMPTGGGKSM 68 (498)
Q Consensus 54 ~dvlv~apTG~GKTl 68 (498)
..+++.+|+|+|||-
T Consensus 42 ~~l~l~G~~G~GKTh 56 (233)
T PRK08727 42 DWLYLSGPAGTGKTH 56 (233)
T ss_pred CeEEEECCCCCCHHH
Confidence 358999999999994
No 202
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.0067 Score=62.62 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.9
Q ss_pred CEEEEcCCCchHHHHHHHhH
Q 010884 55 DCFCLMPTGGGKSMCYQIPA 74 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~ 74 (498)
.+++.||.|+|||.++.+-+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999997765433
No 203
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.71 E-value=0.029 Score=51.45 Aligned_cols=127 Identities=20% Similarity=0.132 Sum_probs=66.5
Q ss_pred EEEEcCCCchHHHHHH-HhH--hcCCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEecCCCCHHHHHHHHHHHhcCCC
Q 010884 56 CFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (498)
Q Consensus 56 vlv~apTG~GKTl~~~-l~~--l~~~~~~lvl~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (498)
+++++|||+|||.+.. +.+ ..++.++.+++ ..|.=+.+|.+.+.+ +|++...........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~-------------- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA-------------- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH--------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH--------------
Confidence 6789999999996542 222 11244444443 344444555555443 555543322111111
Q ss_pred cccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHH
Q 010884 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (498)
Q Consensus 130 ~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~ 208 (498)
...............++|+||-+.+... -.....++..+.... |....+.++||...+..
T Consensus 70 ---------------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 70 ---------------EIAREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ---------------HHHHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ---------------HHHHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0111111112233478999999876422 233345565555554 56678999999988876
Q ss_pred HHHHHHh
Q 010884 209 KDVMESL 215 (498)
Q Consensus 209 ~~i~~~l 215 (498)
..+....
T Consensus 131 ~~~~~~~ 137 (196)
T PF00448_consen 131 EQALAFY 137 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555543
No 204
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.70 E-value=0.027 Score=52.31 Aligned_cols=102 Identities=25% Similarity=0.324 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHc---CCCEEEEcCCCchHHHHHHHhHh----cCC-CeEEEeCcHHHHHHHHHHHHHHc-----CC
Q 010884 37 AQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPAL----AKP-GIVLVVSPLIALMENQVIGLKEK-----GI 103 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~---g~dvlv~apTG~GKTl~~~l~~l----~~~-~~~lvl~P~~~L~~q~~~~l~~~-----gi 103 (498)
--+|+.|.++...+.+ |++.+.++-.|.|||.+ ++|++ ..+ ..+.+++|. +|..|....|.+. +-
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHHHHHHHhCC
Confidence 3589999999999886 46899999999999976 45554 233 455566664 6777777776662 22
Q ss_pred ceeEe--cCCCC--HHH---HHHHHHHHhcCCCcccEEEECcccccC
Q 010884 104 AGEFL--SSTQT--MQV---KTKIYEDLDSGKPSLRLLYVTPELTAT 143 (498)
Q Consensus 104 ~~~~~--~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~tpe~v~t 143 (498)
++..+ +.... ... ....+..+.. .-.+++++||.+.+
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~---~~gill~~PEhilS 143 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMR---SGGILLATPEHILS 143 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHH---cCCEEEeChHHHHH
Confidence 22222 22211 222 2222233332 35689999996543
No 205
>PRK06526 transposase; Provisional
Probab=96.68 E-value=0.0065 Score=58.04 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=25.4
Q ss_pred HHcCCCEEEEcCCCchHHHHHH--HhHhcCCCeEEEeCcHHHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~~--l~~l~~~~~~lvl~P~~~L~~q 93 (498)
+..++++++.+|+|+|||.... .-.+...+..++......|+.+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 3456799999999999995433 1222233333343444445443
No 206
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0079 Score=59.63 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=31.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcH
Q 010884 29 LLRWHFGHAQFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (498)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~i~~-g--~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~ 87 (498)
.|.++.|-.++-.- -..+..+++ | .+.|+++|+|+|||..+.+.+-.......-++.+
T Consensus 22 ~lde~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 22 SLDEVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred CHHHhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 44444454333211 223444443 4 3799999999999987766544433333434333
No 207
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.0045 Score=56.50 Aligned_cols=32 Identities=28% Similarity=0.144 Sum_probs=21.3
Q ss_pred CEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCc
Q 010884 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P 86 (498)
-.++.+|+|+|||...+--+ ...+.+++++.|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999996543212 234567777766
No 208
>PRK06893 DNA replication initiation factor; Validated
Probab=96.60 E-value=0.0086 Score=56.43 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=26.8
Q ss_pred ccEEEEeccccccccCCCCh-HHHHHHHHHHHhCCCCCEEEEeecCChHHH
Q 010884 159 LNLVAIDEAHCISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr-~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 208 (498)
.++++|||+|.+..... +. ..+.-+..+.. .+.+++++|++.++...
T Consensus 92 ~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEE-WELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred CCEEEEeChhhhcCChH-HHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 67999999998753211 11 11122222222 24567788888877654
No 209
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.58 E-value=0.0035 Score=61.75 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHh---Hhc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~---~l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
+++-|.+++.. ..+.++|.|+.|||||.+.+-- .+. .+..+|++++|++.+.+...++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 46889999998 7779999999999999765421 222 346799999999999988888776
No 210
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.57 E-value=0.034 Score=50.33 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=32.1
Q ss_pred EEEEcCCCchHHHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 010884 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (498)
Q Consensus 56 vlv~apTG~GKTl~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (498)
+++.+|+|+|||...+ ...+..+..+++++.- +-..+..+.+..+|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6889999999996432 2334556778877653 3345666677776654
No 211
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.072 Score=53.64 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=34.9
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHH-hCCCCCEEEEeecCChHHHHHHHHHhC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVMESLC 216 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~~~~~~~l~lSAT~~~~~~~~i~~~l~ 216 (498)
..++|+||-+-+... -...+..+..+.. ..|...++.+|||........+.+.+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 478999999876442 1233445555443 335555788999988776666666554
No 212
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.54 E-value=0.024 Score=53.58 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHH
Q 010884 54 RDCFCLMPTGGGKSMC 69 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~ 69 (498)
..+++.+|+|+|||-.
T Consensus 46 ~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 46 GYIYLWSREGAGRSHL 61 (235)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5789999999999943
No 213
>PRK12377 putative replication protein; Provisional
Probab=96.50 E-value=0.016 Score=55.13 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.1
Q ss_pred CCEEEEcCCCchHHHHH-HH-hHhcCCCeEEEeCcHHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY-QI-PALAKPGIVLVVSPLIALMENQ 94 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~-~l-~~l~~~~~~lvl~P~~~L~~q~ 94 (498)
..+++.+|+|+|||-.. .+ -.+...+..+++++..+|+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 57899999999999432 22 2233445555666666776543
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.47 E-value=0.044 Score=51.93 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHc-------C-CCEEEEcCCCchHHHHHH--HhHhcCCCeEEEeCcHHHHHHH
Q 010884 41 DKQLDAIQAVLS-------G-RDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 41 ~~Q~~~i~~i~~-------g-~dvlv~apTG~GKTl~~~--l~~l~~~~~~lvl~P~~~L~~q 93 (498)
+.|..++..+.. + ..+++.+++|+|||.... .-.+...+..+++.+...|+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 456556554331 1 468999999999994332 2223333444444555555543
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=96.44 E-value=0.1 Score=51.94 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=33.0
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHHHHHH
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVM 212 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~ 212 (498)
..++|+||.|+++.. -...+..|..+... .|+..++.++||..........
T Consensus 222 ~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 222 GIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred CCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 368999999998753 22333445544432 3677789999988766554443
No 216
>PLN03025 replication factor C subunit; Provisional
Probab=96.41 E-value=0.016 Score=57.63 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=29.4
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHH
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 212 (498)
...+++|||+|.+.... -..|......+++.-.++++++........+.
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 36799999999986532 13444445555554456666665544433333
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.34 E-value=0.0083 Score=50.80 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCchHHHHHHHhHhcC-CC--eEEEeCcHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l~~l~~-~~--~~lvl~P~~~L 90 (498)
++.+++.+|+|+|||.....-+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4578999999999997654333222 22 46676665543
No 218
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.28 E-value=0.018 Score=58.37 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEcCCCchHHHHHHH--hHhc-CCCeEEEeCcHHHHH
Q 010884 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (498)
Q Consensus 38 ~~~~~Q~~~i~~i------~~g~dvlv~apTG~GKTl~~~l--~~l~-~~~~~lvl~P~~~L~ 91 (498)
++.+-|+++++.+ ..+..+++.+|-|+|||..+-. -.+. .+..+++++||-.-+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 3678899998887 5678899999999999965422 1222 345788888885443
No 219
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.24 E-value=0.12 Score=51.82 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=36.0
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCC-CCEEEEeecCChHHHHHHHHHhCCCC
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQN 219 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~l~lSAT~~~~~~~~i~~~l~~~~ 219 (498)
.++|.||=+-+= +. -......|..+....++ .-.+.+|||.-..+...+...+..-+
T Consensus 282 ~d~ILVDTaGrs-~~---D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~ 339 (407)
T COG1419 282 CDVILVDTAGRS-QY---DKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFP 339 (407)
T ss_pred CCEEEEeCCCCC-cc---CHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCC
Confidence 578999888652 11 11122344444443333 34689999999999999988876543
No 220
>PRK08116 hypothetical protein; Validated
Probab=96.22 E-value=0.089 Score=50.77 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.5
Q ss_pred CEEEEcCCCchHHHHHHH--hHhcCCCeEEEeCcHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l--~~l~~~~~~lvl~P~~~L~~q 93 (498)
.+++.+++|+|||..+.. -.+...+..++..+...|+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 499999999999954322 122223444455555666544
No 221
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.21 E-value=0.083 Score=51.04 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHcCCCEEEEcCCCchHHHH-HHHhH--hcC-CCeEEEeCcHHHHHHHHHHHHHHc--CCceeEec--CCCCHHHHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMC-YQIPA--LAK-PGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS--STQTMQVKTKIY 121 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~-~~l~~--l~~-~~~~lvl~P~~~L~~q~~~~l~~~--gi~~~~~~--~~~~~~~~~~~~ 121 (498)
+..|.-+++.||||+|||.. .++.. ... +..+++++--. -..+...++.+. ++...... ............
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 34556788999999999953 33322 223 56777776321 123333333321 33222111 111122222222
Q ss_pred HHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 122 ~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
..+.. .+.+ .++-.+..+.-......+........+++||||..+.+..
T Consensus 106 ~~~~~-~~~l-~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEG-TGRL-FMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcC-CCcE-EEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 22221 1112 2222222222233444444444445689999999998864
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.19 E-value=0.097 Score=50.43 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCchHHHHHH--HhHhcCC-CeEEEeCcHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ--IPALAKP-GIVLVVSPLIALMEN 93 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~--l~~l~~~-~~~lvl~P~~~L~~q 93 (498)
+..+++.+|||+|||.... .-.+... +..++..+...++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5679999999999994322 2223332 444455555555543
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.16 E-value=0.069 Score=46.65 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=22.4
Q ss_pred EEEEcCCCchHHHHHHHh---HhcCCCeEEEeCcHHHH
Q 010884 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIAL 90 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l~---~l~~~~~~lvl~P~~~L 90 (498)
+++.+|+|+|||...... ....++.++++..-..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 578999999999644322 12245677777654443
No 224
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.11 E-value=0.23 Score=51.17 Aligned_cols=55 Identities=22% Similarity=0.158 Sum_probs=35.1
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHH-h-CCCCCEEEEeecCChHHHHHHHHHhC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-Y-LPDVPILALTATAAPKVQKDVMESLC 216 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~-~~~~~~l~lSAT~~~~~~~~i~~~l~ 216 (498)
..++|+||.+-.... -......+..+.. . .|....+.++||........+...+.
T Consensus 299 ~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 478999999976321 1122334545544 1 23344789999999888887777664
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.09 E-value=0.082 Score=52.50 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCCEEEEcCCCchHHHHHH--HhHhcCCCeEEEeCcHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~--l~~l~~~~~~lvl~P~~~L~~q 93 (498)
++.+++.||||+|||.... ...+...+..++..+...|+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 4789999999999994322 2223344555555666666544
No 226
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.028 Score=55.51 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHH
Q 010884 36 HAQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 36 ~~~~~~~Q~~~i~~i~----~g~---dvlv~apTG~GKTl~~ 70 (498)
++.++|||..++..+. .|+ -.++.+|.|.||+..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 4678999999998765 333 4889999999999644
No 227
>PF13173 AAA_14: AAA domain
Probab=96.04 E-value=0.037 Score=46.90 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=27.7
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
-.+|+|||+|.+.+|. ..+..+....++.+ +.+|++.....
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~-ii~tgS~~~~l 102 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIK-IILTGSSSSLL 102 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCce-EEEEccchHHH
Confidence 5689999999998876 55666666655665 44555544433
No 228
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.03 E-value=0.03 Score=51.76 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.2
Q ss_pred CEEEEcCCCchHHHHHHHhH
Q 010884 55 DCFCLMPTGGGKSMCYQIPA 74 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~ 74 (498)
++++.+|+|.|||..+.+-+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHH
Confidence 68999999999997655533
No 229
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.02 E-value=0.019 Score=55.00 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=23.7
Q ss_pred HHHHHHHHHHc---C---CCEEEEcCCCchHHHHHHHhHh
Q 010884 42 KQLDAIQAVLS---G---RDCFCLMPTGGGKSMCYQIPAL 75 (498)
Q Consensus 42 ~Q~~~i~~i~~---g---~dvlv~apTG~GKTl~~~l~~l 75 (498)
.|..++..+.+ + -..++.+|.|+|||-+..+-+-
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 56666655432 2 3689999999999988766443
No 230
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.074 Score=55.90 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.4
Q ss_pred CCEEEEcCCCchHHHHHHHh
Q 010884 54 RDCFCLMPTGGGKSMCYQIP 73 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~ 73 (498)
+.+++.+|.|+|||.++.+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999776543
No 231
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.96 E-value=0.037 Score=62.45 Aligned_cols=54 Identities=24% Similarity=0.107 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH--HhHhc-CCCeEEEeCcHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALM 91 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~d-vlv~apTG~GKTl~~~--l~~l~-~~~~~lvl~P~~~L~ 91 (498)
.|++.|.+|+..++.+++ +++.++.|+|||.... .-++. .+..+++++||-.-+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 589999999999998765 6789999999996422 11222 356788899987654
No 232
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.93 E-value=0.059 Score=52.13 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
.+++++++||-|||.+.
T Consensus 62 p~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII 78 (302)
T ss_pred CceEEecCCCCcHHHHH
Confidence 47999999999999754
No 233
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.89 E-value=0.11 Score=48.68 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchHHH
Q 010884 53 GRDCFCLMPTGGGKSM 68 (498)
Q Consensus 53 g~dvlv~apTG~GKTl 68 (498)
++.+++.+|+|+|||.
T Consensus 42 ~~~~~l~G~~G~GKT~ 57 (227)
T PRK08903 42 DRFFYLWGEAGSGRSH 57 (227)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4579999999999994
No 234
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.028 Score=59.98 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=30.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHH
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMES 214 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~ 214 (498)
.++.+++||||+|.|+.-. ...|.+.++..|..-+++|..|-...+...|...
T Consensus 122 ~gr~KViIIDEah~Ls~~A------aNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA------FNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred cCCceEEEEEChHhcCHHH------HHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 4557899999999997522 2333333333344335566666555555444443
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.13 Score=51.70 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=31.0
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHh
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l 215 (498)
..++|+||.+-.... . ......+..+.... +...++.++||.......++...+
T Consensus 215 ~~DlVLIDTaG~~~~-d---~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 215 NKHMVLIDTIGMSQR-D---RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCCEEEEcCCCCCcc-c---HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 358899999964321 0 11112333332221 234489999999888777665544
No 236
>PRK05973 replicative DNA helicase; Provisional
Probab=95.76 E-value=0.15 Score=48.06 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=49.6
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHH-----HHH----HcCCCEEEEcCCCchHHHHHH---HhHhcCCCeEEEeC
Q 010884 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAI-----QAV----LSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVS 85 (498)
Q Consensus 18 ~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i-----~~i----~~g~dvlv~apTG~GKTl~~~---l~~l~~~~~~lvl~ 85 (498)
...++++.+.+.-.+ -||..+.-....+- +.+ ..|.-+++.|++|+|||...+ .-+...+..+++++
T Consensus 21 ~~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 21 QNIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred cCCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666555555444 58876544443332 122 234567889999999996433 22334566777776
Q ss_pred cHHHHHHHHHHHHHHcCCc
Q 010884 86 PLIALMENQVIGLKEKGIA 104 (498)
Q Consensus 86 P~~~L~~q~~~~l~~~gi~ 104 (498)
---. .++..+++.++|+.
T Consensus 100 lEes-~~~i~~R~~s~g~d 117 (237)
T PRK05973 100 LEYT-EQDVRDRLRALGAD 117 (237)
T ss_pred EeCC-HHHHHHHHHHcCCC
Confidence 4333 35666777777653
No 237
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.76 E-value=0.073 Score=60.59 Aligned_cols=68 Identities=28% Similarity=0.241 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHH--hHh-cCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEe
Q 010884 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l--~~l-~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (498)
..|++.|.+|+..+..+ +-+++.++.|+|||...-. -++ ..+..++.+.|+-.-+. .|.+ .|+.+..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~----~L~e~~Gi~a~TI 452 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAE----GLEKEAGIQSRTL 452 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHH----HHHHhhCCCeeeH
Confidence 35899999999998654 5678899999999964322 222 24667888999865543 3332 46655444
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.75 E-value=0.044 Score=64.35 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHH--HHhHh---c--CCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 010884 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPAL---A--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~--~l~~l---~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (498)
.|++.|.+|+..++.+ +-+++.+..|+|||... ++.++ . .+..++.++||-.-+. .|.+.|+.+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~----~L~e~Gi~A~ 908 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG----EMRSAGVDAQ 908 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH----HHHHhCchHh
Confidence 5899999999999965 56889999999999653 22222 1 2356888999966543 3444565543
No 239
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.079 Score=58.59 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=26.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 208 (498)
++..++||||||.|.. .....|.+.....|..-++++..|-...+.
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 4578999999999864 223344444444443334444445444443
No 240
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.73 E-value=0.34 Score=46.70 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=67.1
Q ss_pred CCEEEEcCCCchHHHHHHHhH--hc-CCCeEEEeCc--H-HHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPA--LA-KPGIVLVVSP--L-IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~--l~-~~~~~lvl~P--~-~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (498)
..+.+.+|+|+|||..+..-+ +. ....+.+++- . .+.+.|+.......+++....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~------------------- 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV------------------- 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-------------------
Confidence 467889999999997665332 22 2334444432 2 245555544444444332211
Q ss_pred CCcccEEEECcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCCh
Q 010884 128 KPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAP 205 (498)
Q Consensus 128 ~~~~~~l~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~ 205 (498)
.++. +...+.........++++||-+-+... -......+..+.... |...++.++||...
T Consensus 137 --------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 137 --------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred --------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 1111 111222222233579999999976432 123344454444432 44457889999887
Q ss_pred HHHHHHHHHhC
Q 010884 206 KVQKDVMESLC 216 (498)
Q Consensus 206 ~~~~~i~~~l~ 216 (498)
.....+.+.+.
T Consensus 199 ~d~~~~~~~f~ 209 (270)
T PRK06731 199 KDMIEIITNFK 209 (270)
T ss_pred HHHHHHHHHhC
Confidence 66666666543
No 241
>PRK04195 replication factor C large subunit; Provisional
Probab=95.73 E-value=0.086 Score=55.56 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
.+.+++.||+|+|||.....
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35799999999999976543
No 242
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.058 Score=53.63 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g----~dvlv~apTG~GKTl~~~ 71 (498)
..+|||...+..+... +-.++.+|.|.|||..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 3579999999988754 257899999999996543
No 243
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.72 E-value=0.068 Score=55.15 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
..+++.||+|+|||.....
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3789999999999976544
No 244
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.047 Score=60.13 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC----C-CceEe-ecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~----g-~~~~~-~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
...+..+..+.-...+.++++.++|.--+.+.++.|.+. | ..+.. ||+.|+.++|..++++|.+|..+|||+|+
T Consensus 110 KTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 110 KTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 444555555555555678889999998888888888763 2 33333 99999999999999999999999999999
Q ss_pred ccccc-cc-cC--CccEEEEeC
Q 010884 317 AFGMG-ID-RK--DVRLVCHFN 334 (498)
Q Consensus 317 a~~~G-iD-~p--~v~~VI~~~ 334 (498)
.|-.- .+ +. ..++|+.-|
T Consensus 190 ~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 190 QFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHHHhhHHHhcccCCCEEEEcc
Confidence 87532 22 12 355666554
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.64 E-value=0.27 Score=54.18 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHH----cC---CCE-EEEcCCCchHHHHH
Q 010884 39 FRDKQLDAIQAVL----SG---RDC-FCLMPTGGGKSMCY 70 (498)
Q Consensus 39 ~~~~Q~~~i~~i~----~g---~dv-lv~apTG~GKTl~~ 70 (498)
-|.-|.+.|..++ .+ ..+ ++.|+||+|||++.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3456666554433 22 234 59999999999864
No 246
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.64 E-value=0.11 Score=53.86 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=26.5
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHH
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 209 (498)
..++++|||+|.+..+...-...+.-+..+.. .+. .+++|++.++....
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k-~IIlts~~~p~~l~ 250 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGK-LIVISSTCAPQDLK 250 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCC-cEEEecCCCHHHHh
Confidence 37899999999987543222222333333332 234 45666665554433
No 247
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.61 E-value=0.06 Score=50.29 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=28.2
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChH---HHHHHHHHhC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK---VQKDVMESLC 216 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~---~~~~i~~~l~ 216 (498)
..++++||+.|.+......-...+.-+..+... +.++|+.|..++.. ...++...+.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhhhHh
Confidence 378999999999865210001111222223322 55666555555543 2345555553
No 248
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.60 E-value=0.076 Score=58.30 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=66.1
Q ss_pred CccEEEEeCccchHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~ 335 (498)
+.++||.++++.-+.++++.|++ .|..+..+||+++.++|.....+..+|+.+|+|+|...-. +.+.++.+||..+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 56799999999999999999987 4788999999999999999999999999999999974332 56778898887663
No 249
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.57 E-value=0.021 Score=48.16 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l 72 (498)
+++.+|+|+|||.....
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999975543
No 250
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.56 E-value=0.35 Score=51.31 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred HHHHhcCCccEEEEeCccchHHHHHHHHHhCCC-------ceEeecCCCCHHHHHHHHHHHH----cCCCeEEEEe--Cc
Q 010884 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSRKQVVVAT--VA 317 (498)
Q Consensus 251 ~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~----~g~~~vlvaT--~a 317 (498)
++...-+ +-+++|+++.+-...+.+.+.+.|+ +.+++-..-+ -..++..|. .|.-.+|+|. --
T Consensus 623 nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGK 698 (821)
T KOG1133|consen 623 NLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGK 698 (821)
T ss_pred HHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 3334445 4599999999999999999987765 2344444333 345666665 4555677664 46
Q ss_pred cccccccCC--ccEEEEeCCCCC--------------------------------HHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 318 FGMGIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 318 ~~~GiD~p~--v~~VI~~~~p~s--------------------------------~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
++.|||+.| .|.||..++|.. +..--|-+|||-|.-+.=.++++++
T Consensus 699 lSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 699 LSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 789999987 689999998841 1123589999999876555666654
No 251
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.54 E-value=0.095 Score=57.58 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.3
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
.+++.+|+|+|||.....
T Consensus 54 slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 54 SLILYGPPGVGKTTLARI 71 (725)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 789999999999976544
No 252
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.52 E-value=0.096 Score=54.69 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCEEEEcCCCchHHHHHHHhH--hc-C-CCeEEEeCcHHHHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQIPA--LA-K-PGIVLVVSPLIALMENQVI 96 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~--l~-~-~~~~lvl~P~~~L~~q~~~ 96 (498)
+.+++.||+|+|||......+ +. . .+..++.++...++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 458999999999995433211 21 2 1333334455555554333
No 253
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.49 E-value=0.14 Score=51.76 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
..+++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999654
No 254
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.46 E-value=0.041 Score=60.45 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-cccccccCCccEEE
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-~~~GiD~p~v~~VI 331 (498)
.+.+++|.++|+.-|.+.++.+++ .|+++..+||+++.++|..+++.+.+|+.+|+|+|.+ +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 356799999999999888877765 4789999999999999999999999999999999986 44457788999988
Q ss_pred EeC
Q 010884 332 HFN 334 (498)
Q Consensus 332 ~~~ 334 (498)
.-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 543
No 255
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.13 Score=55.01 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+|+.+|.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578899999999987654
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.62 Score=47.52 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=66.3
Q ss_pred CEEEEcCCCchHHHHHH-HhH---hcCCCeEEEeC--cHHHHHHHHHHHH-HHcCCceeEecCCCCHHHHHHHHHHHhcC
Q 010884 55 DCFCLMPTGGGKSMCYQ-IPA---LAKPGIVLVVS--PLIALMENQVIGL-KEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~~---l~~~~~~lvl~--P~~~L~~q~~~~l-~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (498)
-+++++|||+|||.... +.. +..+.++.++. +.++.+.+|.... ...|++..... .
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~------~----------- 287 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------D----------- 287 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH------H-----------
Confidence 36789999999996543 322 22334444444 4556555555554 33444332110 0
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC----CCCCEEEEeecC
Q 010884 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATA 203 (498)
Q Consensus 128 ~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~----~~~~~l~lSAT~ 203 (498)
...+.........++|+||=+..... -......+..+.... |.-.++.++||.
T Consensus 288 -------------------~~~l~~~l~~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 288 -------------------IKKFKETLARDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred -------------------HHHHHHHHHhCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 00111111123478899997654321 123345555555443 335689999999
Q ss_pred ChHHHHHHHHHhC
Q 010884 204 APKVQKDVMESLC 216 (498)
Q Consensus 204 ~~~~~~~i~~~l~ 216 (498)
.......+...+.
T Consensus 345 ~~~~~~~~~~~f~ 357 (432)
T PRK12724 345 SYHHTLTVLKAYE 357 (432)
T ss_pred CHHHHHHHHHHhc
Confidence 9977777766553
No 257
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.12 Score=54.68 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=25.6
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 205 (498)
.++.+++||||+|.++.- ....|.+.....|..-+++|.+|-+.
T Consensus 117 ~~~~kV~iIDE~~~ls~~------a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGH------SFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred cCCcEEEEEEChHhcCHH------HHHHHHHHHhccCCCeEEEEEECChH
Confidence 345789999999998752 23444444454443334444445433
No 258
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.43 E-value=0.081 Score=50.88 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
.++++.+|+|+|||..+.+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999976543
No 259
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.12 Score=53.04 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCccEEEEeccccccccCCCChHHHH-----HHHHHHHhCC--CCCEEEEeecCChHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYR-----KLSSLRNYLP--DVPILALTATAAPKVQK 209 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~-----~l~~l~~~~~--~~~~l~lSAT~~~~~~~ 209 (498)
..++.||||+..++.+|.. .-|.|. .|.-+.+..| +..++.+..|-...+.+
T Consensus 597 S~lsiivvDdiErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred CcceEEEEcchhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 3488999999999999864 333333 2334444444 23455555554444433
No 260
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.34 E-value=0.089 Score=55.59 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=65.0
Q ss_pred CccEEEEeCccchHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~ 334 (498)
+.++||.++++.-+.++++.|++. |..+..+||+++.++|.....+..+|+.+|+|+|...-. ..++++.+||..+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 567999999999999999999864 778999999999999999998889999999999975433 4577888888655
No 261
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.051 Score=58.92 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=27.3
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
++.+++||||+|.|..-. ...|.+.+...|..-+++|++|-...+
T Consensus 118 gr~KVIIIDEah~LT~~A------~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA------FNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred CCceEEEEeChhhCCHHH------HHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 457899999999997622 234444455545444556666654443
No 262
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.33 Score=49.03 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
.++++.+|||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 36999999999999764
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=95.30 E-value=0.11 Score=49.14 Aligned_cols=15 Identities=20% Similarity=0.157 Sum_probs=13.0
Q ss_pred CCEEEEcCCCchHHH
Q 010884 54 RDCFCLMPTGGGKSM 68 (498)
Q Consensus 54 ~dvlv~apTG~GKTl 68 (498)
..+++.||+|+|||-
T Consensus 46 ~~l~l~G~~G~GKTH 60 (234)
T PRK05642 46 SLIYLWGKDGVGRSH 60 (234)
T ss_pred CeEEEECCCCCCHHH
Confidence 467899999999994
No 264
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.23 E-value=0.062 Score=51.60 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=75.8
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHHH---hHhcC-CCeEEEeCc---HHHHHHHHHHHHHHcCCceeEecCCC-C
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAK-PGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSSTQ-T 113 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~l---~~l~~-~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~~~~~-~ 113 (498)
.++.++.| .=+++.|+||.|||...+- -+... +..+++++. -..++...+..+. +++...+..+. .
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s--~v~~~~i~~g~l~ 85 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS--GVPYNKIRSGDLS 85 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH--TSTHHHHHCCGCH
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh--cchhhhhhccccC
Confidence 34455443 3356778999999954332 12233 467888874 3455544444443 33332232222 2
Q ss_pred HHHHHHHHHHHhcCCCcccEEE-ECcccccChhhHHHHHhhhhc-CCccEEEEeccccccccC--CCChHHHH----HHH
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWG--HDFRPSYR----KLS 185 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~-~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g--~~fr~~~~----~l~ 185 (498)
..+...+......-. ...+.+ .+| .+........+...... ..+++||||=.|.+.... .+-+..+. .|.
T Consensus 86 ~~e~~~~~~~~~~l~-~~~l~i~~~~-~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk 163 (259)
T PF03796_consen 86 DEEFERLQAAAEKLS-DLPLYIEDTP-SLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELK 163 (259)
T ss_dssp HHHHHHHHHHHHHHH-TSEEEEEESS-S-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hCcEEEECCC-CCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 222222222111111 123333 333 23333344444444444 678999999999997742 11222222 233
Q ss_pred HHHHhCCCCCEEEEeecCC
Q 010884 186 SLRNYLPDVPILALTATAA 204 (498)
Q Consensus 186 ~l~~~~~~~~~l~lSAT~~ 204 (498)
.+... -++|++++|..-.
T Consensus 164 ~lA~~-~~i~vi~~sQlnr 181 (259)
T PF03796_consen 164 ALAKE-LNIPVIALSQLNR 181 (259)
T ss_dssp HHHHH-HTSEEEEEEEBSG
T ss_pred HHHHH-cCCeEEEccccCh
Confidence 33322 2889999888643
No 265
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.21 E-value=0.087 Score=62.80 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHH--HhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 010884 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~--l~~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~ 107 (498)
.|++.|++|+..++.+ +-+++.+..|+|||.... +.++. .+..++.++||-.-+. .|+..|+.+..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk----~L~e~Gi~A~T 1041 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG----EMRSAGVDAQT 1041 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH----HHHhcCcchhh
Confidence 5899999999999976 467889999999996532 22221 1346788899976543 44455665443
No 266
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.20 E-value=0.14 Score=52.75 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=25.4
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHH
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 209 (498)
.++++|||+|.+......-...+..+..+... +.+ +++|++.++....
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~-iiits~~~p~~l~ 247 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQ-IVLTSDRPPKELP 247 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCC-EEEecCCCHHHHh
Confidence 67999999998764211111122223333222 344 5667776666543
No 267
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.18 E-value=0.095 Score=49.63 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=55.7
Q ss_pred cCCCEEEEcCCCchHHHHHH-H--hHhcC-CCeEEEeC---cHHHHHHHHHHHHHHcCCceeEecCC-CCHHHHH---HH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSST-QTMQVKT---KI 120 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~-l--~~l~~-~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~~~-~~~~~~~---~~ 120 (498)
.|.-+++.|+||+|||...+ + -.... +..+++++ |...++....... .++....+... ....... ..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE--SGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHH
Confidence 44567889999999995322 2 22233 67788887 4445544433222 23332211111 1111111 11
Q ss_pred HHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 121 ~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
...+.. ..+.+.....+.-......+........+++||||=.+.+..
T Consensus 90 ~~~~~~----~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 90 IGELKE----LPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HHHHhc----CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 112211 233332222222233444454444445789999999998754
No 268
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.16 E-value=0.085 Score=64.29 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHH------HHhHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 010884 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~------~l~~l~-~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (498)
..|++.|++|+..++.+ +-+++.++.|+|||... +..++. .+..++.++||-.-+ ..|+..|+.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa----~~L~~~g~~a~ 1092 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV----GELKSAGVQAQ 1092 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH----HHHHhcCCchH
Confidence 36899999999999876 45677899999999654 111222 355788889996544 44445566543
No 269
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.12 E-value=0.017 Score=59.00 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=45.1
Q ss_pred CEEEEcCCCchHHHHHHHhHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecC
Q 010884 55 DCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~l~-~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (498)
++++.||||+|||.++.+|.+. ..+.+||+-|--++.......+++.|-++..++-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcC
Confidence 4789999999999999888765 4678899999999987777666777776666654
No 270
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.7 Score=48.53 Aligned_cols=54 Identities=28% Similarity=0.212 Sum_probs=32.2
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHh
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l 215 (498)
..++|+||.+-.... + ......+..+........+++++++........+.+.+
T Consensus 428 ~~DLVLIDTaG~s~~---D-~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 428 DYKLVLIDTAGMGQR---D-RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cCCEEEecCCCcchh---h-HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 478999999976421 1 11122333344333456688999998776666555544
No 271
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.05 E-value=0.81 Score=50.83 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHH--HhHhc-CCCeEEEeCcHHHHH
Q 010884 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALM 91 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~--l~~l~-~~~~~lvl~P~~~L~ 91 (498)
.|++.|.+|+..++.+ +-+++.++.|+|||...- .-++. .+..+++++||-.-+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAA 409 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 4889999999999875 567889999999995432 22222 366788889996554
No 272
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.16 Score=53.19 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
.+++.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999976654
No 273
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.98 E-value=0.12 Score=50.73 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHH-cCC--CEEEEcCCCchHHHHHHHhHh
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVL-SGR--DCFCLMPTGGGKSMCYQIPAL 75 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~-~g~--dvlv~apTG~GKTl~~~l~~l 75 (498)
+.|..++|-+++- .|.-.+..++ .++ .+++++|.|+|||..+-+.+-
T Consensus 135 ktL~dyvGQ~hlv-~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 135 KTLDDYVGQSHLV-GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred chHHHhcchhhhc-CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 3445555544432 2334444444 343 789999999999976655443
No 274
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.96 E-value=0.21 Score=49.40 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=24.0
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
.++|||||+|.+... .....+..+....+..-.+.+|++.....
T Consensus 101 ~~vliiDe~d~l~~~-----~~~~~L~~~le~~~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 101 GKVIIIDEFDRLGLA-----DAQRHLRSFMEAYSKNCSFIITANNKNGI 144 (316)
T ss_pred CeEEEEECcccccCH-----HHHHHHHHHHHhcCCCceEEEEcCChhhc
Confidence 578999999987321 11234444455544433455555543333
No 275
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.90 E-value=0.14 Score=54.76 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+-.++.||.|+|||.++-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478899999999976644
No 276
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.89 E-value=0.34 Score=50.10 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=69.9
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-Hh---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEecC-CCC
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSS-TQT 113 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~-l~---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~~-~~~ 113 (498)
.++.++.| .=+++.|+||+|||...+ +. ++..+..+++++ |...|+...... ..|++...+.. ...
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~ 260 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLAS--KSGINTGNIRTGRFN 260 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhcCCCC
Confidence 44554443 446778899999995433 22 123456777776 344444333222 13443322222 222
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc-CCccEEEEeccccccc-cCCCChHHHHHHHHHHH--
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRN-- 189 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~-- 189 (498)
......+......-. ...+.+.....+.-......+...... +.+++||||=.|.+.. .+.+ | +..+..+.+
T Consensus 261 ~~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~-~--~~~~~~i~~~L 336 (421)
T TIGR03600 261 DSDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRD-R--NEELGGISRGL 336 (421)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC-H--HHHHHHHHHHH
Confidence 222222222111110 123333222222222333344433332 2589999999998864 2222 2 232222222
Q ss_pred -hC---CCCCEEEEeecC
Q 010884 190 -YL---PDVPILALTATA 203 (498)
Q Consensus 190 -~~---~~~~~l~lSAT~ 203 (498)
.+ -++|++++|-.-
T Consensus 337 k~lAke~~i~Vi~lsQln 354 (421)
T TIGR03600 337 KALAKELDVPVVLLAQLN 354 (421)
T ss_pred HHHHHHhCCcEEEecccC
Confidence 11 278888887653
No 277
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.88 E-value=0.11 Score=55.92 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=26.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
.+...++||||+|.|+.-. ...|.+.....|..-+++|..|-...+
T Consensus 117 ~g~~KV~IIDEah~Ls~~a------~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHS------FNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred cCCCEEEEEechHhCCHHH------HHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 3567899999999987522 234444444444433445555544433
No 278
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.86 E-value=0.2 Score=54.48 Aligned_cols=90 Identities=26% Similarity=0.225 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhC-C-CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc
Q 010884 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (498)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~ 319 (498)
.|.+...+++.. ..++++||.++....+.++.+.|++. | ..+..||+++++.+|.+...+..+|+.+|+|.|..+
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 344444444432 13567999999999999999999864 4 678999999999999999999999999999999763
Q ss_pred cccccCCccEEEEeC
Q 010884 320 MGIDRKDVRLVCHFN 334 (498)
Q Consensus 320 ~GiD~p~v~~VI~~~ 334 (498)
.=.-++|...||..+
T Consensus 251 vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 VFAPVEDLGLVAIWD 265 (665)
T ss_pred EEeccCCCCEEEEEc
Confidence 234556777777554
No 279
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.15 Score=51.66 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.7
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999976544
No 280
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.85 E-value=0.11 Score=54.64 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=68.4
Q ss_pred HHHHHHHHcC-----CCEEEEcCCCchHHHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHH
Q 010884 44 LDAIQAVLSG-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (498)
Q Consensus 44 ~~~i~~i~~g-----~dvlv~apTG~GKTl~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 115 (498)
...++.++.| .-+++.+|+|+|||+..+ .-.+.++.++++++-- +-..|...++.++|+...
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e-Es~~~i~~~~~~lg~~~~--------- 318 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE-ESRAQLLRNAYSWGIDFE--------- 318 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee-CCHHHHHHHHHHcCCChH---------
Confidence 3456776654 468899999999995432 2233456688888743 344677777888776421
Q ss_pred HHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccc
Q 010884 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (498)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (498)
.....+ .+.++...|+...-..++..+.........+++|||=.-.+
T Consensus 319 ------~~~~~g--~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 319 ------EMEQQG--LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred ------HHhhCC--cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 111122 15555555655544556666666666666889999988765
No 281
>PRK08760 replicative DNA helicase; Provisional
Probab=94.80 E-value=0.13 Score=53.91 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=71.8
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHHHhH----hcCCCeEEEeCcHHHHHHHHHHHHHHcC--CceeEecC-CCCH
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKG--IAGEFLSS-TQTM 114 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~l~~----l~~~~~~lvl~P~~~L~~q~~~~l~~~g--i~~~~~~~-~~~~ 114 (498)
.++.+..| .=+++.|.||.|||...+--+ ...+..+++++.--.- .|.+.++.... ++...+.. ....
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~-~ql~~Rl~a~~s~i~~~~i~~g~l~~ 296 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA-SQLAMRLISSNGRINAQRLRTGALED 296 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH-HHHHHHHHHhhCCCcHHHHhcCCCCH
Confidence 44455443 335667899999996443211 2234567777543222 34555554432 33222222 2223
Q ss_pred HHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CChH-HHHH----HHHHH
Q 010884 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-SYRK----LSSLR 188 (498)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-~~~~----l~~l~ 188 (498)
.+...+......-. ...+.+....-+.-......+........+++||||=.+.+..-+. +-|. .+.. |..+.
T Consensus 297 ~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lA 375 (476)
T PRK08760 297 EDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLA 375 (476)
T ss_pred HHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHH
Confidence 32222222221111 1334333222233233444455444455689999999998864332 1121 1222 22222
Q ss_pred HhCCCCCEEEEeec
Q 010884 189 NYLPDVPILALTAT 202 (498)
Q Consensus 189 ~~~~~~~~l~lSAT 202 (498)
+. -++|++++|-.
T Consensus 376 ke-l~ipVi~lsQL 388 (476)
T PRK08760 376 KE-LNVPVIALSQL 388 (476)
T ss_pred HH-hCCEEEEeecc
Confidence 22 27888888743
No 282
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.2 Score=53.97 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=27.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 208 (498)
++.+++||||+|.++.-. +..|.+.....|..-+++|.+|-+..+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA------FNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCceEEEEEChhhCCHHH------HHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 457899999999987522 2334334444344445555556544443
No 283
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.78 E-value=0.75 Score=47.02 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
..+++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999754
No 284
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.12 Score=51.02 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=31.7
Q ss_pred hhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHH
Q 010884 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (498)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 213 (498)
...+..+++|||+||.|..-. -..|.+....-|.--+++|+++-+..+...|..
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred cccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 334668899999999987622 133333333334444666666665555544443
No 285
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.24 Score=51.85 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=29.9
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 213 (498)
+..+++||||+|.++.. ....|.+.....|..-++.|.+|-...+...+..
T Consensus 115 ~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S 165 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS 165 (491)
T ss_pred CCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH
Confidence 45789999999998762 2344444444444443555555655554444433
No 286
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.70 E-value=0.084 Score=57.20 Aligned_cols=137 Identities=17% Similarity=0.106 Sum_probs=80.7
Q ss_pred CEEEEcCCCchHHHHHHHhHh-c-----------CCCeEEEeCcHHHHHHHHHHHHHHcCC----ceeEecCCCCHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQIPAL-A-----------KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKT 118 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~l-~-----------~~~~~lvl~P~~~L~~q~~~~l~~~gi----~~~~~~~~~~~~~~~ 118 (498)
-.|+.-.-|-|||..-+...+ . ..+.+|+++|+ +++.||..++.+..- .+.++++ +.
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g------r~ 226 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG------RT 226 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc------cc
Confidence 456677899999965433222 1 23467888888 555789998844322 2233332 11
Q ss_pred HHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEE
Q 010884 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198 (498)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~ 198 (498)
.....+ ..++++++|+.++.+..+.. -.+-.+|+||||.+..+.- ........+.....-.
T Consensus 227 kd~~el----~~~dVVltTy~il~~~~l~~--------i~w~Riildea~~ikn~~t-------q~~~a~~~L~a~~RWc 287 (674)
T KOG1001|consen 227 KDKSEL----NSYDVVLTTYDILKNSPLVK--------IKWLRIVLDEAHTIKNKDT-------QIFKAVCQLDAKYRWC 287 (674)
T ss_pred cccchh----cCCceEEeeHHHhhcccccc--------eeEEEEEeccccccCCcch-------Hhhhhheeeccceeee
Confidence 111111 23779999999888633221 1256799999999988652 2211111222333567
Q ss_pred EeecCChHHHHHHHHHhCC
Q 010884 199 LTATAAPKVQKDVMESLCL 217 (498)
Q Consensus 199 lSAT~~~~~~~~i~~~l~~ 217 (498)
||+|+......++...+..
T Consensus 288 LtgtPiqn~~~~lysl~~f 306 (674)
T KOG1001|consen 288 LTGTPIQNNLDELYSLFKF 306 (674)
T ss_pred ecCChhhhhHHHHHHHHHH
Confidence 8999988887777665543
No 287
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.70 E-value=0.12 Score=57.60 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 209 (498)
+..+++||||+|.|..-+ ...|.++++..|..-+++|..|-...+..
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 457899999999997632 34555566655544444554454444333
No 288
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.69 E-value=0.12 Score=49.65 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=20.8
Q ss_pred HHHHHHHHHHH----cCC-CEEEEcCCCchHHHHHH
Q 010884 41 DKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 41 ~~Q~~~i~~i~----~g~-dvlv~apTG~GKTl~~~ 71 (498)
+.+.+++..+. .+. -+++.||+|+|||....
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 44555555443 233 57899999999997654
No 289
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.62 E-value=0.79 Score=56.21 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHH--HhHhc-CCCeEEEeCcHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~--l~~l~-~~~~~lvl~P~~~L~~ 92 (498)
.+.+.|.+|+..++.. +-.++.++.|+|||.... +-++. .+..+++++|+-.-+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 4789999999998876 457889999999996432 22222 3668999999976443
No 290
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.26 Score=53.32 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=25.7
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
++.+++||||+|.++.- .+..|.+.....|..-.++|++|-....
T Consensus 118 gk~KVIIIDEad~Ls~~------A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKS------AFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred CCcEEEEEECccccCHH------HHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 45789999999987641 2334444444444333445555544433
No 291
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.56 E-value=0.83 Score=42.98 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=32.5
Q ss_pred cCCCEEEEcCCCchHHHHH-HHh--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 52 SGRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~-~l~--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.|.-+++.+|+|+|||... ++. .+..+..+++++..... .+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~-~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT-TEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHhCC
Confidence 4667899999999999652 332 23456677887743322 455555555554
No 292
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.56 E-value=0.39 Score=50.04 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=24.7
Q ss_pred CCEEEEcCCCchHHHHHH-Hh-Hhc--CCCeEEEeCcHHHHHHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ-IP-ALA--KPGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~-l~-~l~--~~~~~lvl~P~~~L~~q~~~~l 98 (498)
+.+++.|++|+|||-... +. .+. ..+..++.++...++.+.+..+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 458999999999993222 11 111 2233333444456665555444
No 293
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.55 E-value=0.2 Score=46.88 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+..+++.||+|+|||...
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999654
No 294
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.4 Score=47.19 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~ 92 (498)
+.|++.+|+|+||||.+-..|-+... +.+=+.-.+|++
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSElVq 223 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSELVQ 223 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHHHH
Confidence 68999999999999865443333333 333334445553
No 295
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.16 Score=54.53 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=26.6
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
++.+++||||+|.++.-+ ...|.+.....|+.-.++|++|-....
T Consensus 117 gk~KV~IIDEVh~LS~~A------~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS------FNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred CCcEEEEEechHhcCHHH------HHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 457899999999987522 234444444444433455555654443
No 296
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.54 E-value=0.093 Score=57.22 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=65.3
Q ss_pred CccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc-ccccCCccEEEE
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-GIDRKDVRLVCH 332 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~-GiD~p~v~~VI~ 332 (498)
+.+++|.++|+.-|.++++.+++ .|+++..+||+++.++|..+++...+|+.+|||+|.+.-. .+.+.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 55799999999999988877765 3789999999999999999999999999999999986443 577788888884
Q ss_pred eC
Q 010884 333 FN 334 (498)
Q Consensus 333 ~~ 334 (498)
-.
T Consensus 364 DE 365 (630)
T TIGR00643 364 DE 365 (630)
T ss_pred ec
Confidence 43
No 297
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.52 E-value=0.4 Score=48.49 Aligned_cols=58 Identities=29% Similarity=0.278 Sum_probs=34.1
Q ss_pred HHHHHHHcC-----CCEEEEcCCCchHHHHHH-HhH-h-cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 45 ~~i~~i~~g-----~dvlv~apTG~GKTl~~~-l~~-l-~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.-++.++.| .-+++.+++|+|||...+ +.. + ..++++++++--.+. .|...++.++|+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~-~qi~~Ra~rlg~ 134 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP-EQIKLRADRLGI 134 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH-HHHHHHHHHcCC
Confidence 355666654 457889999999996433 222 2 234678887654332 344444555543
No 298
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.51 E-value=0.14 Score=49.20 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=31.0
Q ss_pred CCCEEEEcCCCchHHH-HHHHh--HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCC
Q 010884 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVS---PLIALMENQVIGLKEKGI 103 (498)
Q Consensus 53 g~dvlv~apTG~GKTl-~~~l~--~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi 103 (498)
|.-+++.+|+|+|||. |.++. .+..+.++++++ |...+.++.......+|.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 4568899999999995 33332 234566788887 333344444444455554
No 299
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.50 E-value=0.029 Score=58.96 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=46.9
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (498)
.+++++||||+|||..+.+|.+.. .+.+||.-|--+|.......+++.|-++..++-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeec
Confidence 369999999999999999998754 568888889999988888888887776666654
No 300
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.48 E-value=1.1 Score=42.29 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=58.8
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHH-HH--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHH
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl~~-~l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~ 117 (498)
.++.++. |.-+++.+++|+|||... ++ -.+..+.++++++--... .+.++.+.++|+...-
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~-~~~~~~~~~~g~~~~~---------- 81 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS-KSYLKQMESVKIDISD---------- 81 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH-HHHHHHHHHCCCChhH----------
Confidence 4455554 356788999999999432 33 224456777777654333 5666777777654211
Q ss_pred HHHHHHHhcCCCcccEEEECcccccC-----hhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 118 TKIYEDLDSGKPSLRLLYVTPELTAT-----PGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~~tpe~v~t-----~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
.+..+. ..++-..++.+.. ...+..+.........+++||||.-.+..
T Consensus 82 -----~~~~g~--l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 82 -----FFLWGY--LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred -----HHhCCC--ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 011111 2222222222211 22344444444444678999999986543
No 301
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.46 E-value=0.35 Score=52.64 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHh---HhcC--CCeEEEeCcHHHHHHHHHHH-
Q 010884 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIP---ALAK--PGIVLVVSPLIALMENQVIG- 97 (498)
Q Consensus 26 ~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~--dvlv~apTG~GKTl~~~l~---~l~~--~~~~lvl~P~~~L~~q~~~~- 97 (498)
....+.. ...++...-|.+.+..++.++ -+++.|.=|=|||.+.-+. +-.. ...++|.+|+.+=++.....
T Consensus 203 ~~~~l~~-l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 203 FPRELYE-LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred CCHHHhh-hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHH
Confidence 3334444 233334344444555666553 5788999999999654322 1122 34899999998765444333
Q ss_pred ---HHHcCCceeEecCCCCHHHHHHHHHHHh-cCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 010884 98 ---LKEKGIAGEFLSSTQTMQVKTKIYEDLD-SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 98 ---l~~~gi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (498)
|..+|.+-....... ..+. .....++|-|.+|.... .. -+++|||||-.|.-
T Consensus 282 ~~~l~~lg~~~~v~~d~~---------g~~~~~~~~~~~i~y~~P~~a~-~~-------------~DllvVDEAAaIpl- 337 (758)
T COG1444 282 GKGLEFLGYKRKVAPDAL---------GEIREVSGDGFRIEYVPPDDAQ-EE-------------ADLLVVDEAAAIPL- 337 (758)
T ss_pred HHhHHHhCCccccccccc---------cceeeecCCceeEEeeCcchhc-cc-------------CCEEEEehhhcCCh-
Confidence 444554321111110 0011 11122556677776553 11 47899999987642
Q ss_pred CCCChHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010884 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (498)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 204 (498)
--|..+... -+.++||.|..
T Consensus 338 --------plL~~l~~~---~~rv~~sTTIh 357 (758)
T COG1444 338 --------PLLHKLLRR---FPRVLFSTTIH 357 (758)
T ss_pred --------HHHHHHHhh---cCceEEEeeec
Confidence 233344433 35788999964
No 302
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.16 Score=50.57 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEcCCCchHHHHHH
Q 010884 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~--g---~dvlv~apTG~GKTl~~~ 71 (498)
++|||...++.+.. + +-.++.+|.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 46899998887764 3 357899999999996543
No 303
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.38 E-value=0.29 Score=52.69 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.2
Q ss_pred CCEEEEcCCCchHHHHHHHh
Q 010884 54 RDCFCLMPTGGGKSMCYQIP 73 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~ 73 (498)
+.+++.+|.|+|||.++.+-
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35899999999999776543
No 304
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.36 E-value=0.18 Score=47.23 Aligned_cols=130 Identities=25% Similarity=0.255 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCchHHHH-HH--HhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010884 53 GRDCFCLMPTGGGKSMC-YQ--IPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~-~~--l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (498)
|.-+++.+|+|+|||+- ++ ...+.+ +..+++++- .+-..+..+.++++|.... .....+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~---------------~~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLE---------------EYEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HH---------------HHHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHH---------------HHhhcC-
Confidence 35789999999999953 33 334556 777777773 3333666777777765321 111111
Q ss_pred CcccEEEECccccc----C-hhhHHHHHhhhhcCCccEEEEeccccccccC--CCChHHHHHHHHHHHhCCCCCEEEEee
Q 010884 129 PSLRLLYVTPELTA----T-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDVPILALTA 201 (498)
Q Consensus 129 ~~~~~l~~tpe~v~----t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--~~fr~~~~~l~~l~~~~~~~~~l~lSA 201 (498)
.+.++-..++... . ..+...+.........+++|||-...+.... ..+|..+..+....+.. +. ..++|+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-~~-t~llt~ 158 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-GV-TTLLTS 158 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-TE-EEEEEE
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-CC-EEEEEE
Confidence 1444444444331 1 2244445444443345899999998882222 12444444444444433 23 344555
Q ss_pred c
Q 010884 202 T 202 (498)
Q Consensus 202 T 202 (498)
+
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 4
No 305
>PRK05748 replicative DNA helicase; Provisional
Probab=94.36 E-value=0.24 Score=51.63 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=69.9
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-Hh---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-cCCCCH
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTM 114 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~-l~---~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~~~ 114 (498)
.++.+..| .-+++.|+||.|||...+ +. +...+..+++++.-- -..|.+.++-. -+++...+ .+....
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEm-s~~~l~~R~l~~~~~v~~~~i~~~~l~~ 270 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM-GAESLVMRMLCAEGNIDAQRLRTGQLTD 270 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCC-CHHHHHHHHHHHhcCCCHHHhhcCCCCH
Confidence 45555444 346778899999995332 21 122355666665321 12233333321 12322211 122222
Q ss_pred HHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcC-CccEEEEeccccccccCC--CChHHHHHHHHHHHhC
Q 010884 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYL 191 (498)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g~--~fr~~~~~l~~l~~~~ 191 (498)
.............. +..+.+.-...+........+.+..... .+++||||=.|.+...+. +-| ...+..+.+.+
T Consensus 271 ~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r--~~~i~~i~~~L 347 (448)
T PRK05748 271 DDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENR--QQEVSEISRSL 347 (448)
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCH--HHHHHHHHHHH
Confidence 22222222222111 1233332111222233444444444333 689999999999864332 112 12222222222
Q ss_pred ------CCCCEEEEeecCC
Q 010884 192 ------PDVPILALTATAA 204 (498)
Q Consensus 192 ------~~~~~l~lSAT~~ 204 (498)
-++|++++|-...
T Consensus 348 K~lAke~~i~vi~lsQlnr 366 (448)
T PRK05748 348 KALAKELKVPVIALSQLSR 366 (448)
T ss_pred HHHHHHhCCeEEEecccCh
Confidence 2788888877643
No 306
>PRK09183 transposase/IS protein; Provisional
Probab=94.34 E-value=0.47 Score=45.51 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHcCCCEEEEcCCCchHHHHHHHh---HhcCCCeEEEeCcHHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALME 92 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~~l~---~l~~~~~~lvl~P~~~L~~ 92 (498)
+..+..+++.+|+|+|||.....- +...+..++++ +...|+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHH
Confidence 446778999999999999543321 12334444444 4445543
No 307
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.32 E-value=0.28 Score=52.43 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=24.4
Q ss_pred CEEEEcCCCchHHHHHH-H-hHhcC--CCeEEEeCcHHHHHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ-I-PALAK--PGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l-~~l~~--~~~~lvl~P~~~L~~q~~~~ 97 (498)
.+++.+++|+|||-... + -.+.. .+..++.++...++++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH
Confidence 48999999999994322 1 11211 23444555566666554433
No 308
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.32 E-value=0.76 Score=43.43 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=38.0
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHH-HHHH--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl-~~~l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (498)
.++.++. |.-+++.+|+|+|||. +.++ ..+..+.++++++- -+-..+..+.+.++|.+
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGWD 74 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCCC
Confidence 4455554 4578899999999996 3332 33456777888873 34445666667776654
No 309
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.22 Score=53.87 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+|+.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4679999999999976543
No 310
>PRK09165 replicative DNA helicase; Provisional
Probab=94.29 E-value=0.28 Score=51.74 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=71.2
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHHHhH--h--c--------------CCCeEEEeCcHHHHHHHHHHHHHH--c
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQIPA--L--A--------------KPGIVLVVSPLIALMENQVIGLKE--K 101 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~l~~--l--~--------------~~~~~lvl~P~~~L~~q~~~~l~~--~ 101 (498)
.++.++.| .=+++.|+||.|||...+--+ . . .+..+++++.--. ..|.+.++.. .
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ql~~R~la~~s 284 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSEQS 284 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HHHHHHHHHHHhc
Confidence 34455443 336778899999995432111 1 1 1356777753222 2344444433 2
Q ss_pred CCceeEecC-CCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC---CC
Q 010884 102 GIAGEFLSS-TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DF 177 (498)
Q Consensus 102 gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~f 177 (498)
+++...+.. .........+........ ...+.+...--+.-......+.+......+++||||=.|.+..-+. +-
T Consensus 285 ~v~~~~i~~~~l~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~~~~~~~~ 363 (497)
T PRK09165 285 EISSSKIRRGKISEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRGSSKRSSDN 363 (497)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccCCCCCCCCc
Confidence 444322222 223333333333222111 1233333221222223444444444445689999999998864331 22
Q ss_pred hH-HHHHHHHHHHhC---CCCCEEEEeec
Q 010884 178 RP-SYRKLSSLRNYL---PDVPILALTAT 202 (498)
Q Consensus 178 r~-~~~~l~~l~~~~---~~~~~l~lSAT 202 (498)
|. .+..+.+-++.+ -++|++++|--
T Consensus 364 r~~ev~~is~~LK~lAkel~ipVi~lsQL 392 (497)
T PRK09165 364 RVQEISEITQGLKALAKELNIPVIALSQL 392 (497)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 21 222222211211 27777777763
No 311
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.28 E-value=0.14 Score=52.34 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=47.6
Q ss_pred HhcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHH--hHh-----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 32 WHFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQI--PAL-----AKPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~~~l--~~l-----~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
-+|.|+..+|.|.+-+..+. .+.+.++.||+|+|||.+.+- .+. ....+.|+.+-|..=++-.+.+|+.
T Consensus 10 v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 10 VYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred EecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 36899999999998775544 345899999999999965331 111 2356788888777655555555544
No 312
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.21 Score=52.96 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=24.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecC
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 203 (498)
.+...++||||||.+..-. ...|.......|+.-++++..|-
T Consensus 117 ~g~~kViIIDEa~~ls~~a------~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS------FNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred cCCcEEEEEechhhccHHH------HHHHHHHHhcCCCCceEEEEECC
Confidence 3457899999999987522 23444455554444344444453
No 313
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.18 Score=49.78 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=32.9
Q ss_pred hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHH
Q 010884 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (498)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 213 (498)
..+..+++|||+||.|..-. -..|.+....-|..-+++|.++-+..+...|..
T Consensus 105 ~~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNESA------SNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred ccCCceEEEecchhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 34568899999999987522 133444444444444677777766666555544
No 314
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.22 E-value=0.29 Score=51.53 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEcCCCchHHHHHHHhH---h-c---CCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 41 DKQLDAIQAVLS-----G----RDCFCLMPTGGGKSMCYQIPA---L-A---KPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 41 ~~Q~~~i~~i~~-----g----~dvlv~apTG~GKTl~~~l~~---l-~---~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
|||+-++..++. | +.+++..|=|-|||......+ + . .+..++++++++.-+......++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 688888777762 2 358899999999995432221 1 1 2467899999999888888777664
No 315
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.22 E-value=0.29 Score=53.37 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=25.6
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChH
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 206 (498)
.+...++||||||.+..- ....|.......|..-++.+.+|-+..
T Consensus 116 ~g~~KV~IIDEa~~LT~~------A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS------AFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred cCCCEEEEEEChhhCCHH------HHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 355789999999998642 233444444444443345555554333
No 316
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.18 E-value=0.042 Score=58.95 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=49.3
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (498)
+++++.||||+|||..+.+|.+.. ++.+||+=|--++........++.|-++..++-.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999999999999999998764 6788999999999988888888888777766543
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=1.1 Score=45.91 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=33.2
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~ 216 (498)
..++++||.+-+. +.-......+..+.... +...++.++||.......++...+.
T Consensus 269 ~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 269 GKHMVLIDTVGMS----QRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred CCCEEEecCCCCC----cchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 3578899986321 11112234455554322 3455789999998888887777654
No 318
>PRK05595 replicative DNA helicase; Provisional
Probab=94.16 E-value=0.24 Score=51.66 Aligned_cols=157 Identities=16% Similarity=0.108 Sum_probs=72.9
Q ss_pred HHHHHHHcC----CCEEEEcCCCchHHHHHH-Hh---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecC-CCC
Q 010884 45 DAIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQT 113 (498)
Q Consensus 45 ~~i~~i~~g----~dvlv~apTG~GKTl~~~-l~---~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~~-~~~ 113 (498)
..++.+..| .=+++.|.||.|||...+ +. +...+..+++++.--+ ..+.+.++-. .+++...+.. ...
T Consensus 189 ~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms-~~~l~~R~~a~~~~v~~~~~~~~~l~ 267 (444)
T PRK05595 189 RELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS-KEQLAYKLLCSEANVDMLRLRTGNLE 267 (444)
T ss_pred HHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC-HHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 355665544 335668899999996433 22 2234566777764321 1333333322 2444332222 222
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CChH-HHHHHHHHHHhC
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-SYRKLSSLRNYL 191 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-~~~~l~~l~~~~ 191 (498)
......+........ ...+.+--+.-+.-......+........+++||||=.|.+..-+. +-|. .+..+.+-++.+
T Consensus 268 ~~e~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~l 346 (444)
T PRK05595 268 DKDWENIARASGPLA-AAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKAL 346 (444)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHH
Confidence 223222222221111 1233332221222233444444444445699999999999974321 2221 222222212111
Q ss_pred ---CCCCEEEEeecC
Q 010884 192 ---PDVPILALTATA 203 (498)
Q Consensus 192 ---~~~~~l~lSAT~ 203 (498)
-++|++++|-.-
T Consensus 347 Ake~~i~vi~lsQLn 361 (444)
T PRK05595 347 AKEMECPVIALSQLS 361 (444)
T ss_pred HHHhCCeEEEeeccC
Confidence 278888887553
No 319
>PHA02533 17 large terminase protein; Provisional
Probab=94.14 E-value=0.31 Score=51.78 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhH----h-cCCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----L-AKPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~----l-~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
.++|+|++++..+..++-.++..+=..|||.+....+ + ..+..+++++|+..-+....+.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4778999999988767766788888999996554222 2 3456899999998877777666654
No 320
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.11 E-value=0.096 Score=57.51 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
.+++-|.+|+.+ ....++|.|+.|||||.+.. +.- +. .+..+|+++.|+.-+.+..+++.+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 378999999876 35689999999999996533 222 22 2457999999999999988888763
No 321
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.10 E-value=0.063 Score=56.65 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=32.8
Q ss_pred cCCC-CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHhHh
Q 010884 34 FGHA-QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL 75 (498)
Q Consensus 34 fg~~-~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~~~l~~l 75 (498)
|+|. +|+.+|.+.+..+. +|+-.|+..|||+||||..+..++
T Consensus 10 F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 10 FPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred cCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 4443 47789999887754 688889999999999987766655
No 322
>CHL00176 ftsH cell division protein; Validated
Probab=94.05 E-value=0.8 Score=49.74 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 217 ~gVLL~GPpGTGKT~LAra 235 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKA 235 (638)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 323
>PRK06904 replicative DNA helicase; Validated
Probab=94.05 E-value=1.2 Score=46.61 Aligned_cols=145 Identities=20% Similarity=0.202 Sum_probs=64.1
Q ss_pred CEEEEcCCCchHHHHHH-Hh---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecC--CCCHHHHHHHHHHHhc
Q 010884 55 DCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS--TQTMQVKTKIYEDLDS 126 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~---~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~~--~~~~~~~~~~~~~~~~ 126 (498)
=+++.|.||.|||...+ +. +...+..+++++.--+ ..|.+.++-+ .+++...+.. .....+...+......
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~ 301 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP-AEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGM 301 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45667799999996432 11 1223556777764322 2333333332 2333322222 2333333333222211
Q ss_pred CCCcccEEEECcc-cccChhhHHHHHhhhhc-CCccEEEEeccccccccCC-CChH-HHHHHHHHHHhC---CCCCEEEE
Q 010884 127 GKPSLRLLYVTPE-LTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYRKLSSLRNYL---PDVPILAL 199 (498)
Q Consensus 127 ~~~~~~~l~~tpe-~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~~l~~l~~~~---~~~~~l~l 199 (498)
-..... +|.... -+..........+.... +.+++||||=.+.+..-+. +-|. .+..+.+-++.+ -++|++++
T Consensus 302 l~~~~~-l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~l 380 (472)
T PRK06904 302 FKQKPN-LYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVAL 380 (472)
T ss_pred HhcCCC-EEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 110111 222221 12222233334333322 3589999999998864332 1221 222222222111 27888888
Q ss_pred ee
Q 010884 200 TA 201 (498)
Q Consensus 200 SA 201 (498)
|-
T Consensus 381 sQ 382 (472)
T PRK06904 381 SQ 382 (472)
T ss_pred Ee
Confidence 73
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.01 E-value=1.8 Score=44.71 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=30.0
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHHHH
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKD 210 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~ 210 (498)
.++||||.+-+... -......+..+... .|+..++.+.||........
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~ 224 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQ 224 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHH
Confidence 38899999966432 12233445555443 36777888899887655443
No 325
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.01 E-value=0.54 Score=48.94 Aligned_cols=57 Identities=30% Similarity=0.283 Sum_probs=34.9
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHH-HHhH-h-cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY-QIPA-L-AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 46 ~i~~i~~g-----~dvlv~apTG~GKTl~~-~l~~-l-~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
-++.++.| .-+++.+++|+|||... ++.. + ..+.++++++---. ..|...++.++|.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~ 132 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGL 132 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCC
Confidence 45666653 45788999999999533 3322 2 24667888875433 3455555555554
No 326
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.3 Score=52.29 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=29.6
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 212 (498)
+...++||||+|.+..- .+..|.+.....|..-+++|..|-...+...+.
T Consensus 117 ~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~ 166 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPTIR 166 (584)
T ss_pred CCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHH
Confidence 45789999999999753 234454555554544444444465554444443
No 327
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.98 E-value=0.11 Score=51.03 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.9
Q ss_pred CCCEEEEcCCCchHHH
Q 010884 53 GRDCFCLMPTGGGKSM 68 (498)
Q Consensus 53 g~dvlv~apTG~GKTl 68 (498)
++.+++.||+|+|||.
T Consensus 156 ~~gl~L~G~~G~GKTh 171 (306)
T PRK08939 156 VKGLYLYGDFGVGKSY 171 (306)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3579999999999994
No 328
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.92 E-value=0.34 Score=49.14 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=29.1
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH----HHHHHHHhC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV----QKDVMESLC 216 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~----~~~i~~~l~ 216 (498)
.+++++||.++.+..+...-..-+..+..++.. +. .|++|+.-+|.. ..++...+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~k-qIvltsdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GK-QIVLTSDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CC-EEEEEcCCCchhhccccHHHHHHHh
Confidence 388999999999876532212222333334332 23 455555444432 234455443
No 329
>PRK08840 replicative DNA helicase; Provisional
Probab=93.90 E-value=0.77 Score=47.97 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=63.8
Q ss_pred CCEEEEcCCCchHHHHHH-H---hHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-cCCCCHHHHHHHHHHHhc
Q 010884 54 RDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDS 126 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~-l---~~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~~~~ 126 (498)
.=+++.|.||.|||.-.+ + .+...+..+++++.--. ..|.+.++-. .+++...+ .+.....+...+......
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 296 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345667899999996432 1 12234556777764322 2333333332 23332222 222333333333222111
Q ss_pred CCCcccEEEECcc-cccChhhHHHHHhhhhc-CCccEEEEeccccccccCC-CChH-HHHHHHHHHHhC---CCCCEEEE
Q 010884 127 GKPSLRLLYVTPE-LTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYRKLSSLRNYL---PDVPILAL 199 (498)
Q Consensus 127 ~~~~~~~l~~tpe-~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~~l~~l~~~~---~~~~~l~l 199 (498)
-.....+ |..+. -+.-........+.... +.+++||||=.|.+...+. +-|. .+..+.+-++.+ -++|++++
T Consensus 297 l~~~~~l-~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~L 375 (464)
T PRK08840 297 LMEKKNM-YIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVAL 375 (464)
T ss_pred HHhcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 0001122 22221 12112233333333322 3589999999999864342 1121 122222111111 27888888
Q ss_pred ee
Q 010884 200 TA 201 (498)
Q Consensus 200 SA 201 (498)
|-
T Consensus 376 sQ 377 (464)
T PRK08840 376 SQ 377 (464)
T ss_pred Ee
Confidence 73
No 330
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.83 E-value=0.066 Score=60.14 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=88.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHhHhc---------------------CCCeEEEeCcHHHHHHHHHHHHHH---cCCceeE
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIPALA---------------------KPGIVLVVSPLIALMENQVIGLKE---KGIAGEF 107 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~~l~---------------------~~~~~lvl~P~~~L~~q~~~~l~~---~gi~~~~ 107 (498)
.|+++++.-..|.|||.+-+...+. ..|.+|||+|.--| .||..++.. .++++.+
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl-~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL-MQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH-HHHHHHHHHhccccceEEE
Confidence 3567788889999999775533321 15789999998655 589988876 2334333
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHH---------HHHhhh-h------cCCccEEEEecccccc
Q 010884 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS---------KLKKIH-S------RGLLNLVAIDEAHCIS 171 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~---------~l~~~~-~------~~~l~~iViDEaH~i~ 171 (498)
.-+......... .. -.+++|+++|...+.+.-... +..+.+ . .-.+-.|++|||+.+-
T Consensus 452 Y~Girk~~~~~~--~e----l~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 452 YFGIRKTFWLSP--FE----LLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred EechhhhcccCc--hh----hhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 322211111000 11 124899999988776532211 111000 0 0013459999999875
Q ss_pred ccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHH
Q 010884 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMES 214 (498)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~ 214 (498)
.-. ....+....+|.+-.-++|+||-.. ..++.-.
T Consensus 526 sss-------S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~L 560 (1394)
T KOG0298|consen 526 SSS-------SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPL 560 (1394)
T ss_pred chH-------HHHHHHHHHhhhhceeeecCCchhh-hhhhHHH
Confidence 511 4566677777888899999998777 4544433
No 331
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.88 Score=43.69 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=61.1
Q ss_pred CEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccE
Q 010884 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (498)
.+++.+|+|+||| |+.-++.. ...+.+-+.+..|+.-|+-+-.+
T Consensus 168 giLLyGPPGTGKS--YLAKAVATEAnSTFFSvSSSDLvSKWmGESEk--------------------------------- 212 (439)
T KOG0739|consen 168 GILLYGPPGTGKS--YLAKAVATEANSTFFSVSSSDLVSKWMGESEK--------------------------------- 212 (439)
T ss_pred eEEEeCCCCCcHH--HHHHHHHhhcCCceEEeehHHHHHHHhccHHH---------------------------------
Confidence 5899999999999 45444432 33666666777777654432211
Q ss_pred EEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChH-HHHHHH-H-HHHhC----CCCCEEEEeecCChH
Q 010884 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP-SYRKLS-S-LRNYL----PDVPILALTATAAPK 206 (498)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~-~~~~l~-~-l~~~~----~~~~~l~lSAT~~~~ 206 (498)
+...|..+...+.-+.|.|||++.+...+.+-.. +-++|. + |.+.. -+--++.|-||-.|-
T Consensus 213 ------------LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 213 ------------LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred ------------HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 1222333333445778999999977543221111 111111 1 11111 134588999998776
Q ss_pred HHHHHH
Q 010884 207 VQKDVM 212 (498)
Q Consensus 207 ~~~~i~ 212 (498)
+....+
T Consensus 281 ~LDsAI 286 (439)
T KOG0739|consen 281 VLDSAI 286 (439)
T ss_pred hHHHHH
Confidence 655433
No 332
>PRK05636 replicative DNA helicase; Provisional
Probab=93.78 E-value=0.35 Score=50.97 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=58.0
Q ss_pred HHHHHHcC---CC-EEEEcCCCchHHHHHH-Hh---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-CCCC
Q 010884 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQT 113 (498)
Q Consensus 46 ~i~~i~~g---~d-vlv~apTG~GKTl~~~-l~---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~ 113 (498)
.++.+..| .+ +++.|.||.|||...+ +. ++..+..+++++ |...|+...+.... +++...+. +..+
T Consensus 254 ~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s--~v~~~~i~~g~l~ 331 (505)
T PRK05636 254 DLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEA--EVRLSDMRGGKMD 331 (505)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhc--CCCHHHHhcCCCC
Confidence 45555544 34 4668899999995333 21 223345666764 44445444333221 23222222 2223
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcc-cccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe-~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
......+...+.... +..+.+- .. -+.-...............+++||||=.|.|..
T Consensus 332 ~~e~~~~~~a~~~l~-~~~l~I~-d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 332 EDAWEKLVQRLGKIA-QAPIFID-DSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEE-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 333333333222111 1223222 11 111122333444444445689999999999864
No 333
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.74 E-value=0.74 Score=47.83 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
+.+++.||+|+|||...
T Consensus 131 n~l~lyG~~G~GKTHLl 147 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_pred CeEEEEcCCCCcHHHHH
Confidence 36899999999999543
No 334
>PHA02542 41 41 helicase; Provisional
Probab=93.70 E-value=0.56 Score=49.08 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=70.3
Q ss_pred HHHHHHHH-cC---CC-EEEEcCCCchHHHHHHHh---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEecCCC
Q 010884 44 LDAIQAVL-SG---RD-CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSSTQ 112 (498)
Q Consensus 44 ~~~i~~i~-~g---~d-vlv~apTG~GKTl~~~l~---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~~~~ 112 (498)
...++.+. .| .+ +++.|++|.|||...+-- +...+..+++++ |...|+....... .+++...+.. .
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~--~~i~~~~l~~-l 252 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANL--LDVSLDDIDD-L 252 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHH--cCCCHHHHhh-c
Confidence 44666666 33 23 566789999999654321 123455677775 4444433322222 2333222211 2
Q ss_pred CHHHHHHHHHHHhcCCCcccEE-EECcc-cccChhhHHHHHhhhhcC--CccEEEEecccccccc--CCCChHHHHHHHH
Q 010884 113 TMQVKTKIYEDLDSGKPSLRLL-YVTPE-LTATPGFMSKLKKIHSRG--LLNLVAIDEAHCISSW--GHDFRPSYRKLSS 186 (498)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l-~~tpe-~v~t~~~~~~l~~~~~~~--~l~~iViDEaH~i~~~--g~~fr~~~~~l~~ 186 (498)
...........+.... ...+. +..|. .+....+...+.+..... .+++||||=.+.+..- .......+..+..
T Consensus 253 ~~~~~~~~~~~~~~~~-~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~ 331 (473)
T PHA02542 253 SKAEYKAKMEKLRSKT-QGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKA 331 (473)
T ss_pred CHHHHHHHHHHHHHHh-CCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHH
Confidence 2222222222221110 12222 22222 222233444444433222 3899999999998521 0001112233333
Q ss_pred HHHhC------CCCCEEEEeecC
Q 010884 187 LRNYL------PDVPILALTATA 203 (498)
Q Consensus 187 l~~~~------~~~~~l~lSAT~ 203 (498)
+.+.+ -++|++++|-.-
T Consensus 332 Isr~LK~lAkel~vpVi~lsQLn 354 (473)
T PHA02542 332 IAEELRGLAVEHDVVVWTAAQTT 354 (473)
T ss_pred HHHHHHHHHHHhCCeEEEEEeeC
Confidence 32221 278888888664
No 335
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.68 E-value=0.11 Score=57.66 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
..|+|-|.+|+.+ ....++|.|..|||||.+.. +.- +. .+..+|+|+.|+..+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999875 34689999999999995532 222 22 2457999999999998888888764
No 336
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.67 E-value=3.5 Score=40.84 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHH----hCCCCCEEEEeecCChHHHHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN----YLPDVPILALTATAAPKVQKDVMES 214 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~----~~~~~~~l~lSAT~~~~~~~~i~~~ 214 (498)
...++|+||=+-++..-. .....+.++.++.. ..|.-.++.++||............
T Consensus 195 ~~~D~ViIDTaGr~~~~~-~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKT-NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCH-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 447899999888754211 11122233322221 2345568999999877655544443
No 337
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.65 E-value=2.9 Score=43.70 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=30.3
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~ 216 (498)
..++++||.+-+... -......+..+.... |...++.++||.......++.+.+.
T Consensus 334 d~d~VLIDTaGr~~~----d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~ 389 (484)
T PRK06995 334 NKHIVLIDTIGMSQR----DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR 389 (484)
T ss_pred CCCeEEeCCCCcChh----hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc
Confidence 357899999654211 111112222222221 3446799999998887776666554
No 338
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.63 E-value=0.71 Score=45.99 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.7
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
.+++.+|+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997553
No 339
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.19 Score=47.90 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHHh
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIP 73 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g----~dvlv~apTG~GKTl~~~l~ 73 (498)
+.|.++.|-.+.+..=.-.|.+.... .++++.+|+|.|||..+.+-
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~II 72 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHII 72 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHH
Confidence 34445445444432222234444332 36999999999999765543
No 340
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.57 E-value=0.12 Score=57.43 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
..|+|-|++|+.+. ...++|.|..|||||.+.. +.- +. .+..+|+|+.|+..+.+..+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35899999998753 4689999999999995532 222 21 3467999999999999988888774
No 341
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.56 E-value=0.22 Score=53.26 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l----~~~~~~lvl~P~~~L~~q~~~~ 97 (498)
..+|+|.+.++++... +.|.+..++-+|||.+.+..+. ..+..+|++.|+..++.+.+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKE 81 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHH
Confidence 4679999999998765 5788899999999985443322 3578899999999999988744
No 342
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=1.5 Score=43.71 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=34.1
Q ss_pred ccccCCCCChhHHHHHHHHHhc--CCCCC-----------CHHHHHHH------HHHHcC-----CCEEEEcCCCchHHH
Q 010884 13 QTQKNKPLHEKEALVKLLRWHF--GHAQF-----------RDKQLDAI------QAVLSG-----RDCFCLMPTGGGKSM 68 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~f--g~~~~-----------~~~Q~~~i------~~i~~g-----~dvlv~apTG~GKTl 68 (498)
....|....+...+...|++-. +.... ...=+||+ +...+| +.++..+|+|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 4566777777777777776632 11111 11111221 223344 689999999999997
Q ss_pred HH
Q 010884 69 CY 70 (498)
Q Consensus 69 ~~ 70 (498)
.+
T Consensus 261 LA 262 (491)
T KOG0738|consen 261 LA 262 (491)
T ss_pred HH
Confidence 54
No 343
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.78 Score=48.25 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecC
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 203 (498)
+...++||||||.+..- ....|.......|...++++.+|-
T Consensus 118 ~~~KVvIIDEad~Lt~~------a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKE------AFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred CCeeEEEEEChhhcCHH------HHHHHHHHHhcCCCCeEEEEEECC
Confidence 44679999999988642 223444444444444455555553
No 344
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.4 Score=49.12 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=26.5
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 208 (498)
.+...++||||+|.+... ....+.......|...++.+.++-...+.
T Consensus 125 ~~~~kvvIIdea~~l~~~------~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA------AFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCeEEEEEeChhhCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 345679999999998752 12334444444444445555555433333
No 345
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.45 E-value=0.76 Score=49.12 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=27.4
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 208 (498)
..+++||||||.+..- ....|.......|...++.+.+|-...+.
T Consensus 119 ~~KVIIIDEad~Lt~~------A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS------AWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred CcEEEEEechHhCCHH------HHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 3578999999998642 23445555555555556666556544443
No 346
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.43 E-value=0.083 Score=57.39 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=46.8
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (498)
+++++.||||+|||..+.+|.+.. .+.+||+=|--++........++.|-.+..++-
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 489999999999999999998764 678888889999987777777777776665554
No 347
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.42 E-value=0.12 Score=46.56 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=24.9
Q ss_pred cCCCEEEEcCCCchHHHHHHH--hHhcCCCeEEEeCcHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l--~~l~~~~~~lvl~P~~~L~~q 93 (498)
.++++++.+|+|+|||..+.. -.+...+..+..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 457899999999999954322 223335555555667677654
No 348
>PRK08506 replicative DNA helicase; Provisional
Probab=93.42 E-value=0.55 Score=49.26 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=70.2
Q ss_pred HHHHHHHHcC----CCEEEEcCCCchHHHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEec-CCCC
Q 010884 44 LDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQT 113 (498)
Q Consensus 44 ~~~i~~i~~g----~dvlv~apTG~GKTl~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~-~~~~ 113 (498)
...++.+..| .=+++.|.||.|||...+- -+...+..+++++.-- =..|.+.++-+ .+++...+. +...
T Consensus 179 ~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEM-s~~ql~~Rlla~~s~v~~~~i~~~~l~ 257 (472)
T PRK08506 179 FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEM-PAEQLMLRMLSAKTSIPLQNLRTGDLD 257 (472)
T ss_pred hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcC-CHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 3355555544 3456778999999954331 1223455677775321 12333444432 233322221 2223
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc-CCccEEEEeccccccccCCCChHHHHHHHHHHHhC-
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL- 191 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~- 191 (498)
......+......-. ...+.+-...-+........+.+.... +.+++||||=.+.+..-+. +......+..+.+.+
T Consensus 258 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ev~~isr~LK 335 (472)
T PRK08506 258 DDEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN-FKDRHLQISEISRGLK 335 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC-CCCHHHHHHHHHHHHH
Confidence 333322222222111 122322211122222333344433332 3589999999998864332 222222333222111
Q ss_pred -----CCCCEEEEeec
Q 010884 192 -----PDVPILALTAT 202 (498)
Q Consensus 192 -----~~~~~l~lSAT 202 (498)
-++|++++|-.
T Consensus 336 ~lAkel~ipVi~lsQL 351 (472)
T PRK08506 336 LLARELDIPIIALSQL 351 (472)
T ss_pred HHHHHhCCcEEEEeec
Confidence 27888888854
No 349
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.36 E-value=0.9 Score=45.64 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=25.9
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 205 (498)
.+...++||||||.+..-. -..|.......|...++++.++.+.
T Consensus 139 ~g~~rVviIDeAd~l~~~a------anaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA------ANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCHHH------HHHHHHHHhcCCCCceEEEEECChh
Confidence 4568899999999986421 2334444444444445555555443
No 350
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.34 E-value=0.18 Score=43.82 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=23.4
Q ss_pred EEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q 93 (498)
.++.+|.|+|||..|......-.+ .++++...+++.|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 467799999999877542222222 5566666666544
No 351
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.34 E-value=0.38 Score=49.11 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHH
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 213 (498)
.+...+++|||+|.+..-. -..|.+.....|...++++++|-+..+...+..
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llpTIrS 166 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRS 166 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChHHHHh
Confidence 3557899999999986522 123444444445555677777765555444443
No 352
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.33 E-value=0.7 Score=51.20 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.++++.+|+|+|||....
T Consensus 208 ~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997654
No 353
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.31 E-value=0.85 Score=46.65 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
.+.+++.+|+|+|||+..-.
T Consensus 179 pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999986543
No 354
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.30 E-value=0.49 Score=50.49 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=65.5
Q ss_pred CCccEEEEeCccc----hHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-cccccccCCccEEE
Q 010884 257 GDTCAIVYCLERT----TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (498)
Q Consensus 257 ~~~~~IVf~~t~~----~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-~~~GiD~p~v~~VI 331 (498)
.+.++..-++|.= +.+.+.++|...|+.+..+.|.+..+.|.++++...+|+++++|.|-| +...+++.+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 3567888999964 445556666667999999999999999999999999999999999998 56689999998888
Q ss_pred EeC
Q 010884 332 HFN 334 (498)
Q Consensus 332 ~~~ 334 (498)
.-.
T Consensus 390 iDE 392 (677)
T COG1200 390 IDE 392 (677)
T ss_pred Eec
Confidence 543
No 355
>PHA02244 ATPase-like protein
Probab=93.30 E-value=0.69 Score=46.35 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHcCCCEEEEcCCCchHHHHHH
Q 010884 47 IQAVLSGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 47 i~~i~~g~dvlv~apTG~GKTl~~~ 71 (498)
...+..+.++++.+|||+|||....
T Consensus 113 ~r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 113 AKIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3445567899999999999996543
No 356
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.28 E-value=0.5 Score=46.95 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEcCCCchHHHHHH
Q 010884 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~--g---~dvlv~apTG~GKTl~~~ 71 (498)
++|||...+..+.. + +-.++.+|.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 36899999988773 3 357899999999996544
No 357
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.27 E-value=0.3 Score=48.75 Aligned_cols=136 Identities=11% Similarity=0.060 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHH----cC---CCEEEEcCCCchHHHHHHH-h--HhcCCCe---EEEeCcHHHHHHHHHHHHHHcCCce
Q 010884 39 FRDKQLDAIQAVL----SG---RDCFCLMPTGGGKSMCYQI-P--ALAKPGI---VLVVSPLIALMENQVIGLKEKGIAG 105 (498)
Q Consensus 39 ~~~~Q~~~i~~i~----~g---~dvlv~apTG~GKTl~~~l-~--~l~~~~~---~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (498)
++|||..++..+. .| +-.++.+|.|.||+..+.. . .+...+. .-=.|+.-.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~---------------- 66 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQ---------------- 66 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHH----------------
Confidence 5788888887765 33 3578999999999965432 1 1221110 000011111
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccc----cChh---hHHHHHhhhhcCCccEEEEeccccccccCCCCh
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPG---FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v----~t~~---~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (498)
.+..+ .+.++.+..||.- .-.. ....+......+..+++|||+||.|..-.
T Consensus 67 -----------------~~~~g-~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~A---- 124 (334)
T PRK07993 67 -----------------LMQAG-THPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA---- 124 (334)
T ss_pred -----------------HHHcC-CCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHH----
Confidence 11111 2356667777632 1111 22222223334668999999999987522
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHH
Q 010884 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMES 214 (498)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~ 214 (498)
-..|.+.+..-|..-+++|.++-+..+...|...
T Consensus 125 --aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 125 --ANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred --HHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 1333334444344446777777666666555543
No 358
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.23 E-value=4 Score=39.46 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=30.4
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-------CCCCCEEEEeecCChHHHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LPDVPILALTATAAPKVQKDVME 213 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-------~~~~~~l~lSAT~~~~~~~~i~~ 213 (498)
...++|+||=+-.... -......|..+... .|+-.++.++||...........
T Consensus 153 ~~~D~ViIDT~G~~~~----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 212 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN----KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV 212 (272)
T ss_pred CCCCEEEEeCCCCCcc----hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH
Confidence 3478899998876542 11112233333322 25666899999977665554433
No 359
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.19 E-value=0.25 Score=55.91 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=65.0
Q ss_pred CccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc-cccccCCccEEEE
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-MGIDRKDVRLVCH 332 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~-~GiD~p~v~~VI~ 332 (498)
+.+++|.++|+.-|.+.++.+++ .++++..++|+.+.+++..+++.+.+|+++|||+|..+- ..+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 46799999999999999888775 367788999999999999999999999999999998543 4577888888884
Q ss_pred eC
Q 010884 333 FN 334 (498)
Q Consensus 333 ~~ 334 (498)
-.
T Consensus 580 DE 581 (926)
T TIGR00580 580 DE 581 (926)
T ss_pred ec
Confidence 33
No 360
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.15 E-value=0.51 Score=49.02 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=68.4
Q ss_pred HHHHHHHcC----CCEEEEcCCCchHHHHHH-Hh--Hh-cCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEecC-CC
Q 010884 45 DAIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--AL-AKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSS-TQ 112 (498)
Q Consensus 45 ~~i~~i~~g----~dvlv~apTG~GKTl~~~-l~--~l-~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~~-~~ 112 (498)
..++.++.| .=+++.|+||+|||...+ +. +. ..+..+++++ |...++....... .+++...+.. ..
T Consensus 183 ~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~--~~v~~~~~~~g~l 260 (434)
T TIGR00665 183 TDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSE--SRVDSQKLRTGKL 260 (434)
T ss_pred hhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHh--cCCCHHHhccCCC
Confidence 345555543 346778899999995433 21 11 2345677776 3334433322211 2333222211 12
Q ss_pred CHHHHHHHHHHHhcCCCcccEEE-ECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CCh-HHHHH----HH
Q 010884 113 TMQVKTKIYEDLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSYRK----LS 185 (498)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~-~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-~~~~~----l~ 185 (498)
................ ...+.+ -+|. +.-......+........+++||||=.+.+..-+. +-| ..+.. |.
T Consensus 261 ~~~~~~~~~~a~~~l~-~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk 338 (434)
T TIGR00665 261 SDEDWEKLTSAAGKLS-EAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLK 338 (434)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 2222222222111111 122222 2222 11123344444444444589999999988854221 112 12222 22
Q ss_pred HHHHhCCCCCEEEEeecC
Q 010884 186 SLRNYLPDVPILALTATA 203 (498)
Q Consensus 186 ~l~~~~~~~~~l~lSAT~ 203 (498)
.+... -++|++++|-..
T Consensus 339 ~lA~e-~~i~vi~lsqln 355 (434)
T TIGR00665 339 ALAKE-LNVPVIALSQLS 355 (434)
T ss_pred HHHHH-hCCeEEEEeccC
Confidence 22222 278888887653
No 361
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.3 Score=51.90 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
-+++.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976654
No 362
>PRK08006 replicative DNA helicase; Provisional
Probab=93.09 E-value=1.2 Score=46.59 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=68.8
Q ss_pred HHHHHHcC---CC-EEEEcCCCchHHHHHHHh----HhcCCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEec-CCCC
Q 010884 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFLS-STQT 113 (498)
Q Consensus 46 ~i~~i~~g---~d-vlv~apTG~GKTl~~~l~----~l~~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~~-~~~~ 113 (498)
.++.+..| .+ +++.|.||.|||.-.+-- +...+..+++++. ...|+....... .+++...+. +..+
T Consensus 213 ~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~--~~v~~~~i~~~~l~ 290 (471)
T PRK08006 213 DLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASL--SRVDQTRIRTGQLD 290 (471)
T ss_pred HHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHh--cCCCHHHhhcCCCC
Confidence 44554444 24 566779999999543311 2233556777763 444443333222 223322222 2233
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcc-cccChhhHHHHHhhhhc-CCccEEEEeccccccccCC-CChH-HHHHHHHHHH
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYRKLSSLRN 189 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe-~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~~l~~l~~ 189 (498)
......+......-.....+ |..+. -+..........+.... +.+++||||=.|.+...+. +-|. .+..+.+-++
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l-~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK 369 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNM-YIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLK 369 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHH
Confidence 33333333222111001222 22222 12222233334333332 3589999999999864321 2222 2222222111
Q ss_pred hC---CCCCEEEEeec
Q 010884 190 YL---PDVPILALTAT 202 (498)
Q Consensus 190 ~~---~~~~~l~lSAT 202 (498)
.+ -++|++++|-.
T Consensus 370 ~lAkel~ipVi~LsQL 385 (471)
T PRK08006 370 ALAKELQVPVVALSQL 385 (471)
T ss_pred HHHHHhCCeEEEEEec
Confidence 11 27888888843
No 363
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.07 E-value=0.68 Score=51.47 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.++++.+|+|+|||....
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997643
No 364
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.05 E-value=0.28 Score=53.54 Aligned_cols=81 Identities=23% Similarity=0.230 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCC
Q 010884 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (498)
Q Consensus 248 ~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~ 326 (498)
.+.+.|.. ++++||.++......++.+.|+.. |.++..+|+++++.+|.....+..+|+.+|+|.|-.+- -.=+++
T Consensus 237 ~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~ 313 (730)
T COG1198 237 AIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKN 313 (730)
T ss_pred HHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhh
Confidence 33344443 578999999999999999998864 88999999999999999999999999999999986432 223345
Q ss_pred ccEEE
Q 010884 327 VRLVC 331 (498)
Q Consensus 327 v~~VI 331 (498)
.-.||
T Consensus 314 LGLII 318 (730)
T COG1198 314 LGLII 318 (730)
T ss_pred ccEEE
Confidence 55555
No 365
>PRK06321 replicative DNA helicase; Provisional
Probab=93.03 E-value=0.68 Score=48.46 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=72.8
Q ss_pred HHHHHHcC---CC-EEEEcCCCchHHHHHHHhH----hcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-CCCC
Q 010884 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQT 113 (498)
Q Consensus 46 ~i~~i~~g---~d-vlv~apTG~GKTl~~~l~~----l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~ 113 (498)
.++.+..| .+ +++.|.||.|||.-.+--+ ...+..+++++ |...|+...... ..+++...+. ....
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~--~s~v~~~~i~~~~l~ 292 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICS--RSEVESKKISVGDLS 292 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHh--hcCCCHHHhhcCCCC
Confidence 45566554 34 4667899999995433111 12355677775 444454433221 1234332222 2223
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC--CChHHHHHHHHHHHhC
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYL 191 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~--~fr~~~~~l~~l~~~~ 191 (498)
......+......-. ...+.+--...+........+........+++||||=.+.+..-+. ........+..+.+.+
T Consensus 293 ~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~L 371 (472)
T PRK06321 293 GRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRML 371 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHH
Confidence 333333333222111 1233332111222223444444544455689999999999864331 1111122333332222
Q ss_pred ------CCCCEEEEeecC
Q 010884 192 ------PDVPILALTATA 203 (498)
Q Consensus 192 ------~~~~~l~lSAT~ 203 (498)
-++|++++|...
T Consensus 372 K~lAkel~vpVi~lsQLn 389 (472)
T PRK06321 372 KNLARELNIPILCLSQLS 389 (472)
T ss_pred HHHHHHhCCcEEEEeecC
Confidence 278888887753
No 366
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.97 E-value=0.26 Score=48.75 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHH--HHhHh---cCCCeEEEeCcHHHH
Q 010884 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (498)
Q Consensus 39 ~~~~Q~~~i~~i~-~g~dvlv~apTG~GKTl~~--~l~~l---~~~~~~lvl~P~~~L 90 (498)
+.+.|.+.+..+. .+.+++++++||||||... ++..+ ....+++++=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 6688888877655 4568999999999999532 22222 123456665555555
No 367
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.79 Score=48.52 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q 93 (498)
+-+++.+|+|+|||+.+...+...+...+-+... +|+..
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 4689999999999988776666544444433333 66543
No 368
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.96 E-value=0.27 Score=43.56 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=33.0
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 213 (498)
+..+++||||||.|..- +...|.+.....|..-+++|+++-...+...+..
T Consensus 101 ~~~KviiI~~ad~l~~~------a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE------AQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SSSEEEEEETGGGS-HH------HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred CCceEEEeehHhhhhHH------HHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 45789999999998752 2345556666666666777777776666655544
No 369
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.95 E-value=0.24 Score=47.42 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=34.0
Q ss_pred cCCCEEEEcCCCchHHHHHH--HhHhcCCCeEEEeCcHHHHHHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~--l~~l~~~~~~lvl~P~~~L~~q~~~~l 98 (498)
.+.++++.||+|+|||..+. .-.+.+.+.-+.++++.+|+.+....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 56799999999999994332 222346678888888988887755444
No 370
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.95 E-value=0.44 Score=50.27 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.1
Q ss_pred EEEEcCCCchHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l 72 (498)
+++.+|+|+|||.+..+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999976543
No 371
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.92 E-value=0.74 Score=49.73 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecC
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 203 (498)
....+|||||+|.+..- ....|.......|..-++++.+|-
T Consensus 119 ~~~kVvIIDEa~~L~~~------a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTA------AFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCeEEEEEeChHhCCHH------HHHHHHHHHhcCCCCeEEEEEeCC
Confidence 44679999999998651 223444444444444455555553
No 372
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.91 E-value=0.11 Score=56.16 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (498)
.++++.||||+|||..+.+|.+.. ++.++|+=|--++..-.....++.|-++..+.-.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~ 283 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPT 283 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 588999999999999999999765 6788888899998877777667777777666543
No 373
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.90 E-value=1 Score=50.14 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=20.0
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcCCCeEEEe
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl 84 (498)
+.+++.+|+|+|||+....-+-..+...+.+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 4689999999999976544333333333333
No 374
>CHL00181 cbbX CbbX; Provisional
Probab=92.90 E-value=0.87 Score=44.41 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
.++++.+|+|+|||.++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999976644
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.89 E-value=3.3 Score=42.61 Aligned_cols=122 Identities=11% Similarity=0.066 Sum_probs=62.2
Q ss_pred CEEEEcCCCchHHHHHH-HhH-hc-CCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010884 55 DCFCLMPTGGGKSMCYQ-IPA-LA-KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~~-l~-~~~~~lvl~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (498)
-+.+++++|+|||.+.. +.. +. .+.++++++ |.+.-+.+|.+.+.. .+++...........
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~------------- 168 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPV------------- 168 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHH-------------
Confidence 36789999999996543 322 22 234555554 456555566554443 444433222111110
Q ss_pred CcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHH
Q 010884 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 207 (498)
Q Consensus 129 ~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~ 207 (498)
.++ ...+.... ....++|+||=+.+... -......+..+.... |...++.++||.....
T Consensus 169 -----------~i~----~~~l~~~~-~~~~DvViIDTaGr~~~----d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 169 -----------KIA----SEGVEKFK-KENFDIIIVDTSGRHKQ----EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA 228 (429)
T ss_pred -----------HHH----HHHHHHHH-hCCCCEEEEECCCCCcc----hHHHHHHHHHHhhhcCCcEEEEEeccccChhH
Confidence 000 00111111 12378899998876432 223345555555443 5666888888876554
Q ss_pred HH
Q 010884 208 QK 209 (498)
Q Consensus 208 ~~ 209 (498)
..
T Consensus 229 ~~ 230 (429)
T TIGR01425 229 EA 230 (429)
T ss_pred HH
Confidence 33
No 376
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.83 E-value=0.88 Score=44.69 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
..+++.+|+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999996543
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.79 E-value=4.4 Score=35.98 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~ 209 (498)
...+++|||....... -......+..+... .+...++.+.|+.......
T Consensus 81 ~~~d~viiDt~g~~~~----~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~ 130 (173)
T cd03115 81 ENFDVVIVDTAGRLQI----DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN 130 (173)
T ss_pred CCCCEEEEECcccchh----hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH
Confidence 3467899999876432 11223344444432 2555667777765554443
No 378
>PRK04328 hypothetical protein; Provisional
Probab=92.73 E-value=0.086 Score=50.32 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHH-HHHH--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl-~~~l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.++.++. |.-+++.+|+|+|||. +.++ -.+.++..+++++ +-+-..+..+.+.++|.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 4455554 4568889999999984 4433 3345666777776 32333445556666665
No 379
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.68 E-value=0.93 Score=41.07 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=48.6
Q ss_pred cCCCEEEEcCCCchHHHHHH-H-hHhc-----------CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ-I-PALA-----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~-l-~~l~-----------~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~ 118 (498)
.|.-+++.||+|+|||...+ + ..+. ....++++..-.. ..+..+++....... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 35568899999999995432 2 1122 3457788765444 345555555532111 111111
Q ss_pred HHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc-CCccEEEEeccccccccCCCChH
Q 010884 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRP 179 (498)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~ 179 (498)
... ..... ...++..........+..+..+.+.... ..+++||||=...+..-+.+...
T Consensus 103 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~ 162 (193)
T PF13481_consen 103 FFV-DLSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNS 162 (193)
T ss_dssp HHH-HH--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HH
T ss_pred EEe-ecccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHH
Confidence 111 11110 0111111110011123344555554444 56999999999888765444444
No 380
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.68 E-value=0.76 Score=44.75 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
.++++.+|+|+|||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999766
No 381
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.63 E-value=0.088 Score=61.41 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=78.0
Q ss_pred ccEEEEeCccchHHHHHHHHHhCCC-ceEeecCCCC-----------HHHHHHHHHHHHcCCCeEEEEeCccccccccCC
Q 010884 259 TCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l~-----------~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~ 326 (498)
-++|+|++.+..+..+.+.++..+. .+..+.|.+. +..+.+++..|....+.+|++|.++..|+|.+-
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 4689999999999988888876422 2223444332 233678899999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHhhcCCCC
Q 010884 327 VRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (498)
Q Consensus 327 v~~VI~~~~p~s~~~y~Q~~GRagR~g 353 (498)
+..|++++.|.....|+|..||+-+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997754
No 382
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.62 E-value=3.2 Score=41.94 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=30.4
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 214 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~ 214 (498)
...++|+||=+-+... -...+..+..+.... |...++.+|||........+.+.
T Consensus 284 ~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 284 NCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred CCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHh
Confidence 3468899998866431 133344555554433 34445677887766555555443
No 383
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.50 E-value=2.8 Score=45.23 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=72.2
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHHh---Hhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCcee--EecCCCCHHHHHHHHH
Q 010884 49 AVLSGRDCFCLMPTGGGKSMCYQIP---ALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGE--FLSSTQTMQVKTKIYE 122 (498)
Q Consensus 49 ~i~~g~dvlv~apTG~GKTl~~~l~---~l~-~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~--~~~~~~~~~~~~~~~~ 122 (498)
...+.+-.++.+|=|-|||.+..+. .+. .+..++|.+|...-+++..+.++..-.... .+..... . ..
T Consensus 183 ~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~-----~-iv 256 (752)
T PHA03333 183 DEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEF-----K-IV 256 (752)
T ss_pred HHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCc-----e-EE
Confidence 3345667888999999999653321 122 456799999988777776666554211000 0000000 0 00
Q ss_pred HHhcCCCcccEEEECccccc----ChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEE
Q 010884 123 DLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198 (498)
Q Consensus 123 ~~~~~~~~~~~l~~tpe~v~----t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~ 198 (498)
....+ ...+.|..|.-.. +-.|...-.+...-...+++|||||+-+.. +.+..+.-+... .+.|+++
T Consensus 257 ~vkgg--~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~------~~l~aIlP~l~~-~~~k~Ii 327 (752)
T PHA03333 257 TLKGT--DENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP------GALLSVLPLMAV-KGTKQIH 327 (752)
T ss_pred EeeCC--eeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH------HHHHHHHHHHcc-CCCceEE
Confidence 01111 1234444443222 000111001111112368999999998754 223333333333 3678888
Q ss_pred EeecCChHH
Q 010884 199 LTATAAPKV 207 (498)
Q Consensus 199 lSAT~~~~~ 207 (498)
+|.+-+...
T Consensus 328 ISS~~~~~s 336 (752)
T PHA03333 328 ISSPVDADS 336 (752)
T ss_pred EeCCCCcch
Confidence 888875543
No 384
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.49 E-value=0.73 Score=51.34 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
++.+++.+|+|+|||....
T Consensus 212 ~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 4679999999999996543
No 385
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.48 E-value=2.6 Score=46.47 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=33.8
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHH-hCCCCCEEEEeecCChHHHHHHHHHhC
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVMESLC 216 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~~~~~~~l~lSAT~~~~~~~~i~~~l~ 216 (498)
.++|+||=+-+... -......+..+.. ..|...++.++||.......++.+.+.
T Consensus 264 ~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 264 KHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred CCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 57888888876432 2223344444443 235566899999988777776765553
No 386
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=92.47 E-value=0.16 Score=54.84 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=45.5
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcC-CceeEecC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLSS 110 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~g-i~~~~~~~ 110 (498)
.++++.||||+|||..+.+|.+.. ++.++|+=|--++..-.....++.| -++..+..
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP 270 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDP 270 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 589999999999999999998765 7789999999999776665555666 55655544
No 387
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.38 E-value=0.62 Score=50.18 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 211 (498)
...+++||||+|.++... ...|.+.....|..-+++|.+|-+..+...+
T Consensus 118 ~~~KVvIIdev~~Lt~~a------~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA------FNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCceEEEEEChhhCCHHH------HHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 457899999999987522 2445445555444334445556544444333
No 388
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.37 E-value=1.3 Score=45.35 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 166 ~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CceEEECCCCCChHHHHHH
Confidence 5699999999999976543
No 389
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.36 E-value=0.77 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHcCCCEEEEcCCCchHHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~~ 71 (498)
+-.|+-+++++|+|+|||....
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHH
Confidence 3367889999999999997544
No 390
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.28 E-value=0.28 Score=54.01 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--Hh-Hhc----CCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~-~l~----~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
|+|-|++++.+ ...+++|.|+.|||||.+.. +. .+. .+..+|+|+.|+.-+.+..+++.+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 68899999875 35689999999999996533 21 121 246789999999888888877765
No 391
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.27 E-value=0.2 Score=44.80 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=48.4
Q ss_pred EEEcCCCchHHHHHHHhH--hcCC--CeEEEeCcHHHHHHHHHHHHH----HcCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010884 57 FCLMPTGGGKSMCYQIPA--LAKP--GIVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (498)
Q Consensus 57 lv~apTG~GKTl~~~l~~--l~~~--~~~lvl~P~~~L~~q~~~~l~----~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (498)
++.|+-|-|||.+.-+.+ +... ..++|.+|..+=++...+.+. .++.+. ...........+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~-- 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-------EKKKRIGQIIKLRF-- 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc-------cccccccccccccc--
Confidence 478899999997644432 2222 368999998875544433322 222211 00000000000111
Q ss_pred CcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010884 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (498)
Q Consensus 129 ~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 204 (498)
....+-|..|+.+.... ...+++|||||=.+.- ..|..+. ...+.++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~~-----------~~~DlliVDEAAaIp~---------p~L~~ll---~~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK-----------PQADLLIVDEAAAIPL---------PLLKQLL---RRFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT---------------SCEEECTGGGS-H---------HHHHHHH---CCSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc-----------CCCCEEEEechhcCCH---------HHHHHHH---hhCCEEEEEeecc
Confidence 12455555555443211 1258999999988743 2333443 3566788888864
No 392
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.14 E-value=1.3 Score=46.82 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||+...
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997654
No 393
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.01 E-value=0.5 Score=51.78 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhH---h----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---L----AKPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~---l----~~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
..+++-|.+|+.. ....++|.|..|||||.+..--+ + ..+..+|+++.++..+....+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999864 33578999999999997643221 2 2356899999999999888888765
No 394
>PRK09354 recA recombinase A; Provisional
Probab=91.97 E-value=0.94 Score=45.18 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=55.6
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHH
Q 010884 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (498)
Q Consensus 46 ~i~~i~~-g-----~dvlv~apTG~GKTl~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (498)
.++.++. | +-+.+.+|+|+|||...+. .+...++.+++|..--++-. ..++.+|+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvdl----------- 112 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVDI----------- 112 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCCH-----------
Confidence 4566676 3 4577999999999954332 22345778888887666643 3455555431
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
-++++..|... ...+..+..+.....+++||||=+-.+.
T Consensus 113 --------------d~lli~qp~~~--Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDTG--EQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 12334434321 1122333334444568999999876553
No 395
>PRK10867 signal recognition particle protein; Provisional
Probab=91.94 E-value=4.9 Score=41.55 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=28.6
Q ss_pred EEEEcCCCchHHHHHH-HhH-h-cC-CCeEEEeC--cHHHHHHHHHHHH-HHcCCcee
Q 010884 56 CFCLMPTGGGKSMCYQ-IPA-L-AK-PGIVLVVS--PLIALMENQVIGL-KEKGIAGE 106 (498)
Q Consensus 56 vlv~apTG~GKTl~~~-l~~-l-~~-~~~~lvl~--P~~~L~~q~~~~l-~~~gi~~~ 106 (498)
+++++|+|+|||.+.. +.. + .. +.+++++. +.+.-+.+|...+ ...|++..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 6788999999996543 222 2 23 44455544 4555555555443 34555543
No 396
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.87 E-value=6.1 Score=40.80 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=29.5
Q ss_pred CEEEEcCCCchHHHHHH-HhH-hc--CCCeEEEeC--cHHHHHHHHHHHH-HHcCCcee
Q 010884 55 DCFCLMPTGGGKSMCYQ-IPA-LA--KPGIVLVVS--PLIALMENQVIGL-KEKGIAGE 106 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~~-l~--~~~~~lvl~--P~~~L~~q~~~~l-~~~gi~~~ 106 (498)
-+++++++|+|||.+.. +.. +. .+.+++++. +.+.-+.+|...+ ...|++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~ 159 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF 159 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE
Confidence 36789999999997643 222 22 344555554 3444455555544 34555543
No 397
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.82 E-value=1.2 Score=43.89 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.5
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
.+++.||+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 398
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.79 E-value=1.1 Score=52.02 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=63.9
Q ss_pred CCccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-ccccccCCccEEE
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-~~GiD~p~v~~VI 331 (498)
.+.+++|.++|+.-|.++++.+.+. ++.+..++++.+.+++..+++...+|.++|||+|..+ ...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3567999999999999999888753 5678889999999999999999999999999999753 3346677888887
Q ss_pred Ee
Q 010884 332 HF 333 (498)
Q Consensus 332 ~~ 333 (498)
.-
T Consensus 728 ID 729 (1147)
T PRK10689 728 VD 729 (1147)
T ss_pred Ee
Confidence 43
No 399
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.75 E-value=0.54 Score=46.15 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHH--HHhHhcC---CCeEEEeCcHHHH
Q 010884 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (498)
Q Consensus 39 ~~~~Q~~~i~~i~-~g~dvlv~apTG~GKTl~~--~l~~l~~---~~~~lvl~P~~~L 90 (498)
+.+.|.+.+..+. .++.+++++|||+|||... ++..+.. ..+++++=...+|
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 5667777776555 4568999999999999542 2222222 4567777666665
No 400
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.67 E-value=0.37 Score=47.65 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHH-HcCCCEEEEcCCCchHHHHHH--HhHh---cCCCeEEEeCcHHHH
Q 010884 39 FRDKQLDAIQAV-LSGRDCFCLMPTGGGKSMCYQ--IPAL---AKPGIVLVVSPLIAL 90 (498)
Q Consensus 39 ~~~~Q~~~i~~i-~~g~dvlv~apTG~GKTl~~~--l~~l---~~~~~~lvl~P~~~L 90 (498)
+.+.|.+.+..+ ..++.+++.++||+|||.... +..+ ....+++++-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 567888888754 456789999999999995322 1111 223456666666555
No 401
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.66 E-value=1.3 Score=40.16 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=23.6
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeec
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 202 (498)
.+...++||||+|.+..-. ...|.......|...++.++++
T Consensus 94 ~~~~kviiide~~~l~~~~------~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA------ANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEEC
Confidence 3456799999999986521 2334444444344445555554
No 402
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.64 E-value=1.2 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHhH
Q 010884 53 GRDCFCLMPTGGGKSMCYQIPA 74 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l~~ 74 (498)
.+.+++.+|+|+|||+.+..-+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA 238 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVA 238 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999998765433
No 403
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.55 E-value=0.33 Score=54.02 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
..|+|-|.+|+.+ ...+++|.|..|||||.+.. +.- +. .+..+|+++-|+.-+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4589999999975 35689999999999995432 222 22 2457999999988888887777653
No 404
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=91.54 E-value=0.17 Score=54.97 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=44.0
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (498)
.++++.||||+|||..+.+|.|.. .+.+||+=|--++........++.| .+..++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 589999999999999999998764 6788999999999876666666666 455443
No 405
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.53 E-value=0.22 Score=51.37 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHcCC--CEEEEcCCCchHHHH
Q 010884 39 FRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMC 69 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g~--dvlv~apTG~GKTl~ 69 (498)
+.+.|.+.+..++... =++|.+|||||||.+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 4688888888887664 467899999999965
No 406
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.52 E-value=1.1 Score=42.58 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+..|+.+++.+|.|+|||...
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 447889999999999999643
No 407
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.49 E-value=2.1 Score=39.90 Aligned_cols=51 Identities=22% Similarity=0.134 Sum_probs=33.6
Q ss_pred CCCEEEEcCCCchHHH-HHHHh--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 010884 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (498)
Q Consensus 53 g~dvlv~apTG~GKTl-~~~l~--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (498)
|.-+++.+++|+|||. +.++. .+..+..+++++.-.. ..+..+.+.++|..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~-~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER-EERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHcCCC
Confidence 4567889999999984 34332 3456667777765443 45666667776643
No 408
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.46 E-value=0.22 Score=53.54 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=55.5
Q ss_pred HHHHHcCCCeEEEEeCccccccccCCcc--------EEEEeCCCCCHHHHHHHHhhcCCCCC---CceEEEEEccchHHH
Q 010884 301 LDDWISSRKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQL---PSKSLLYYGMDDRRR 369 (498)
Q Consensus 301 ~~~f~~g~~~vlvaT~a~~~GiD~p~v~--------~VI~~~~p~s~~~y~Q~~GRagR~g~---~~~~~~~~~~~d~~~ 369 (498)
-++|++|+..|-|-+.+++-||-+..-+ +=|...+|||...-+|..||+.|.++ |.+.+++-...-.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4678999999999999999999876544 34567899999999999999999887 334555544444455
Q ss_pred HHHHH
Q 010884 370 MEFIL 374 (498)
Q Consensus 370 ~~~~~ 374 (498)
+..++
T Consensus 930 FAS~V 934 (1300)
T KOG1513|consen 930 FASIV 934 (1300)
T ss_pred HHHHH
Confidence 44443
No 409
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.44 E-value=0.49 Score=46.50 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHH-HHHhH-hcCCCeEEEeCcHHHH
Q 010884 34 FGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC-YQIPA-LAKPGIVLVVSPLIAL 90 (498)
Q Consensus 34 fg~~~~~~~Q~~~i~~i~~g~-dvlv~apTG~GKTl~-~~l~~-l~~~~~~lvl~P~~~L 90 (498)
..|..+++-|.+.+-.+...+ ++++++.||||||.. ..+.+ +....++|.+=-+.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 345578899999998877766 999999999999953 22222 2234578887777776
No 410
>PRK07004 replicative DNA helicase; Provisional
Probab=91.44 E-value=1.4 Score=46.03 Aligned_cols=143 Identities=20% Similarity=0.161 Sum_probs=65.9
Q ss_pred CCEEEEcCCCchHHHHHH-Hh---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEe-cCCCCHHHHHHHHHHHh
Q 010884 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLD 125 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~-l~---~l~~~~~~lvl~---P~~~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~ 125 (498)
.=+++.|.||.|||...+ +. ++..+..+++++ |...|+...+.... +++...+ .+.....+...+.....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 346778899999996433 21 223456677775 34445444332221 2332222 22233333333222222
Q ss_pred cCCCcccEEEE-CcccccChhhHHHHHhhhhc-CCccEEEEeccccccccCC-CChHHHHHHHHHHHhC------CCCCE
Q 010884 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYL------PDVPI 196 (498)
Q Consensus 126 ~~~~~~~~l~~-tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~~~~~l~~l~~~~------~~~~~ 196 (498)
.-. +..+.+. +| .+..........+.... +.+++||||=.+.+...+. .-| ...+..+.+.+ -++|+
T Consensus 292 ~l~-~~~l~I~d~~-~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r--~~ei~~Isr~LK~lAkel~ipV 367 (460)
T PRK07004 292 KMS-EAQLFIDETG-GLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENR--ATEISEISRSLKSLAKELDVPV 367 (460)
T ss_pred HHh-cCCEEEECCC-CCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcH--HHHHHHHHHHHHHHHHHhCCeE
Confidence 111 1233332 22 12222233333333332 3589999999999964331 112 22233322221 27888
Q ss_pred EEEeec
Q 010884 197 LALTAT 202 (498)
Q Consensus 197 l~lSAT 202 (498)
+++|--
T Consensus 368 i~lsQL 373 (460)
T PRK07004 368 IALSQL 373 (460)
T ss_pred EEEecc
Confidence 888754
No 411
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.41 E-value=1.5 Score=39.65 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=36.9
Q ss_pred HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH
Q 010884 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (498)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 208 (498)
......+..++||+||+-....+|.--. ..+..++...|.-.-+.+|+.-.+...
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~---eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDV---EEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccH---HHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 3444456799999999999998884222 344455566666657888887665543
No 412
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=2.4 Score=44.11 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=36.4
Q ss_pred HHHHhhhhcCCccEEEEeccccccccCCCChHHHH--HHHHHHHh----CCCCCEEEEeecCChHHHH
Q 010884 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR--KLSSLRNY----LPDVPILALTATAAPKVQK 209 (498)
Q Consensus 148 ~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~--~l~~l~~~----~~~~~~l~lSAT~~~~~~~ 209 (498)
..|.......--..|.|||.+.+..--..---.|. .|..++.. -++-.+|.+-||--++...
T Consensus 386 RdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 386 RDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 34433333444678999999998652211111132 24444332 2477899999998887655
No 413
>PRK14701 reverse gyrase; Provisional
Probab=91.36 E-value=1.1 Score=53.75 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=60.6
Q ss_pred CCccEEEEeCccchHHHHHHHHHh------CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccc-cc---cCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG-ID---RKD 326 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~G-iD---~p~ 326 (498)
.+.+++|.++|+.-+.++++.|+. .++.+..+||+++.+++..+++.+.+|+.+|||+|+.+-.- ++ ..+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~ 200 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLK 200 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCC
Confidence 355799999999999999998886 25677899999999999999999999999999999854321 11 134
Q ss_pred ccEEEEeC
Q 010884 327 VRLVCHFN 334 (498)
Q Consensus 327 v~~VI~~~ 334 (498)
++++|.-+
T Consensus 201 i~~iVVDE 208 (1638)
T PRK14701 201 FDFIFVDD 208 (1638)
T ss_pred CCEEEEEC
Confidence 66666433
No 414
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.34 E-value=0.47 Score=47.30 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 479999999999997654
No 415
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.15 Score=49.26 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.4
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
.++++.+|||||||+.++-
T Consensus 98 SNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred ccEEEECCCCCcHHHHHHH
Confidence 4789999999999987764
No 416
>PRK06749 replicative DNA helicase; Provisional
Probab=91.18 E-value=2 Score=44.42 Aligned_cols=41 Identities=17% Similarity=0.049 Sum_probs=23.6
Q ss_pred HHHHHHcC---CC-EEEEcCCCchHHHHHHHh---HhcCCCeEEEeCc
Q 010884 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP 86 (498)
Q Consensus 46 ~i~~i~~g---~d-vlv~apTG~GKTl~~~l~---~l~~~~~~lvl~P 86 (498)
.++.+..| .+ +++.|.||.|||...+-- +...+..+++++.
T Consensus 175 ~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSl 222 (428)
T PRK06749 175 SLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSL 222 (428)
T ss_pred HHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEe
Confidence 45555544 24 566789999999543311 1223456677753
No 417
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.16 E-value=0.32 Score=52.25 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHcC---------C-CEEEEcCCCchHH--HHHHH-h-HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 38 QFRDKQLDAIQAVLSG---------R-DCFCLMPTGGGKS--MCYQI-P-ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g---------~-dvlv~apTG~GKT--l~~~l-~-~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.+...|.+++-...+. + .+++--..|.||- .+-++ - -|.-.+++|+++-+..|--|--+.|+..|.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 4677899998655432 2 2334335555554 33222 1 133467899999999987777777777543
Q ss_pred ---ceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECccccc-----Ch-h---hHHHHHhhhhcCCccEEEEecccccc
Q 010884 104 ---AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-----TP-G---FMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~-----t~-~---~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
.+..++--.... + ..-..+..+--++++|.--+. +. . ++..|........=++||+||||...
T Consensus 344 ~~I~V~alnK~KYak----I-ss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAK----I-SSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred CCccceehhhccccc----c-cccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 343333211111 1 111122333567777765321 11 1 22333333333334789999999875
Q ss_pred ccC----CCChHHHHHHHHHHHhCCCCCEEEEeecC
Q 010884 172 SWG----HDFRPSYRKLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 172 ~~g----~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 203 (498)
..- ..--..=..+..|.+.+|+..++.-|||-
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATG 454 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCCCceEEEeeccC
Confidence 410 00011114566788899999999999994
No 418
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.12 E-value=0.37 Score=46.37 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEe
Q 010884 45 DAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (498)
Q Consensus 45 ~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl 84 (498)
+++..+..|+++++.+|+|+|||.+...-+-..+...+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3455566789999999999999976543332223344433
No 419
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.10 E-value=1 Score=47.92 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=59.6
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHH-HH--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHH
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl~~-~l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~ 117 (498)
.++.++. |.-+++.+++|+|||... ++ -.+..+..+++++-.. -..+..+.+..+|.+...
T Consensus 261 ~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~-~~~~i~~~~~~~g~~~~~---------- 329 (509)
T PRK09302 261 DLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE-SRAQLIRNARSWGIDLEK---------- 329 (509)
T ss_pred HHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC-CHHHHHHHHHHcCCChHH----------
Confidence 4556554 356788999999999532 22 2344566777776443 345666667777654211
Q ss_pred HHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
....+. ..+....|....-..+...+.......+.+++|||=.--+..
T Consensus 330 -----~~~~g~--l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 330 -----MEEKGL--LKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred -----HhhcCC--ceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 011111 223333333322223444454444445678999998876543
No 420
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.00 E-value=3.9 Score=41.28 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHH
Q 010884 53 GRDCFCLMPTGGGKSMC 69 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~ 69 (498)
.+.+.+.||.|.|||+.
T Consensus 62 ~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML 78 (362)
T ss_pred CceEEEECCCCCchhHH
Confidence 36789999999999963
No 421
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.94 E-value=1.2 Score=43.42 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=13.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
+.+++++|||+|||.+.
T Consensus 195 ~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTL 211 (282)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778999999999654
No 422
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.94 E-value=0.6 Score=49.95 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHhHhc---CCCeEEEeCcHHHHHHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~--~l~~l~---~~~~~lvl~P~~~L~~q~~~~ 97 (498)
-+.+...|+.+|++..+.. ++-...+.+-.++..|==.|||.+. ++..+. .+-.+++++|.+..++...++
T Consensus 228 a~r~~~~lk~~Fdi~~~s~----~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~e 303 (738)
T PHA03368 228 AERVERFLRTVFNTPLFSD----AAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEE 303 (738)
T ss_pred HHHHHHHHHHHcCCccccH----HHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHH
Confidence 4567788899999877643 3334456677788889999999643 233222 467899999999998888888
Q ss_pred HHHc
Q 010884 98 LKEK 101 (498)
Q Consensus 98 l~~~ 101 (498)
+...
T Consensus 304 I~~~ 307 (738)
T PHA03368 304 IGAR 307 (738)
T ss_pred HHHH
Confidence 7763
No 423
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.93 E-value=1.2 Score=44.16 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=54.8
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHH
Q 010884 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (498)
Q Consensus 46 ~i~~i~~-g-----~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (498)
.++.++. | +-+.+.+|+|+|||...+-.+ ...++.+++|.+--++-.+ .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~----------- 107 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL----------- 107 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH-----------
Confidence 5666666 3 467899999999995443222 2356788888876666432 344455421
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
-++++..|... ...+..+..+...+.+++||||=+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 108 --------------DNLLISQPDTG--EQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred --------------HHheecCCCCH--HHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 12333333321 1122333333444568999999876553
No 424
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.88 E-value=1.8 Score=42.71 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
+...+++||||+.+.. ..-..+.......|..-.++|++..+..+
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCChhhc
Confidence 4588999999999875 22234444444445444555555544443
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.87 E-value=1 Score=45.44 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=17.4
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+-.|+..++.+|.|+|||...
T Consensus 166 IGkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cccCceEEEeCCCCCChhHHH
Confidence 347889999999999999643
No 426
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.87 E-value=0.38 Score=48.04 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=27.2
Q ss_pred HHHcCCCEEEEcCCCchHHHHH--HHhHhcCCCeEEEeCcHHHH
Q 010884 49 AVLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (498)
Q Consensus 49 ~i~~g~dvlv~apTG~GKTl~~--~l~~l~~~~~~lvl~P~~~L 90 (498)
++..++++++.+|||||||... ++..+....+++.+=.+.+|
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 3446679999999999999532 22222334566666666665
No 427
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.84 E-value=0.76 Score=48.80 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=56.1
Q ss_pred EEEEeCccchHHHHHHHHHh----C-CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC-----ccccc-cccCCccE
Q 010884 261 AIVYCLERTTCDELSAYLSA----G-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 329 (498)
Q Consensus 261 ~IVf~~t~~~~~~l~~~L~~----~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~-----a~~~G-iD~p~v~~ 329 (498)
+||.++||+-|.++++.+.. . ++.+..++||++...+...++ .| .+|||||+ .+.+| +|+..+++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999888875 2 577899999999887765444 46 99999996 46666 88889999
Q ss_pred EEEe
Q 010884 330 VCHF 333 (498)
Q Consensus 330 VI~~ 333 (498)
+|.-
T Consensus 178 lVlD 181 (513)
T COG0513 178 LVLD 181 (513)
T ss_pred EEec
Confidence 8853
No 428
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.80 E-value=0.49 Score=55.70 Aligned_cols=61 Identities=23% Similarity=0.265 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH---hHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALA---KPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l---~~l~---~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
++++-|.+||.+ .+++++|.|.-|||||.+..- -.+. ....++||+=|++-+.+...++.+
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 378999999984 688999999999999976532 2222 224589999999988776666554
No 429
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.71 E-value=1.8 Score=44.56 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=51.8
Q ss_pred Ccc-EEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC-----cccc-ccccCC
Q 010884 258 DTC-AIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKD 326 (498)
Q Consensus 258 ~~~-~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~-----a~~~-GiD~p~ 326 (498)
.+| ++|.|+|++-|.++....++ .|+.++..|||.+..++..-++ -...+||||. +.-| ++|+.+
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 344 46678999988887665554 4889999999999888765554 3467999995 2333 578888
Q ss_pred ccEEEE
Q 010884 327 VRLVCH 332 (498)
Q Consensus 327 v~~VI~ 332 (498)
|.+++.
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 887763
No 430
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=90.69 E-value=1.7 Score=38.29 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=33.3
Q ss_pred hhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChH
Q 010884 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (498)
Q Consensus 152 ~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 206 (498)
.....+..+++|+||+-....+|.--. ..+..+.+..|...-+.+|+--.+.
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~---~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDV---EEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCH---HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 344456789999999999888874322 3455555656655556666654443
No 431
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.67 E-value=1.9 Score=48.62 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=21.1
Q ss_pred HHHHHHHHHHc-------C-----C---CEEEEcCCCchHHHHH
Q 010884 42 KQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 42 ~Q~~~i~~i~~-------g-----~---dvlv~apTG~GKTl~~ 70 (498)
+|.+|+..+.. | + .+++.+|||+|||..+
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 78888776532 1 1 2789999999999655
No 432
>PHA00350 putative assembly protein
Probab=90.67 E-value=2.2 Score=43.36 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.1
Q ss_pred EEEEcCCCchHHHHHH----HhHhcCCC
Q 010884 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (498)
Q Consensus 56 vlv~apTG~GKTl~~~----l~~l~~~~ 79 (498)
.++.+..|+|||+..+ +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999997543 45555554
No 433
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.65 E-value=0.59 Score=49.08 Aligned_cols=57 Identities=23% Similarity=0.172 Sum_probs=42.1
Q ss_pred cCCCEEEEcCCCchHHHHHHH--hH-h------cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI--PA-L------AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l--~~-l------~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (498)
.++-++|++..|||||.+++- +- + ...+.+||+.|.+-++.=..+-|-++|......
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~~V~q 290 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEEGVVQ 290 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccCceee
Confidence 456789999999999976541 11 1 124559999999999888888888888765543
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.58 E-value=0.63 Score=42.14 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHH
Q 010884 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~-~g~dvlv~apTG~GKTl~~ 70 (498)
.+.+.|.+.+.... .+..+++.+|||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 46788888887655 5678999999999999643
No 435
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=3.2 Score=39.31 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=39.8
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHH
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q 93 (498)
.+.+..--++-...|+++....-+.|.- .+.. +--.+.+++.+|+|+|||+|+-..+ .+..-+.+-+--.+|++-
T Consensus 175 ty~dvggckeqieklrevve~pll~per--fv~lgidppkgvllygppgtgktl~arava-nrtdacfirvigselvqk 250 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPER--FVNLGIDPPKGVLLYGPPGTGKTLCARAVA-NRTDACFIRVIGSELVQK 250 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHH--HhhcCCCCCCceEEeCCCCCchhHHHHHHh-cccCceEEeehhHHHHHH
Confidence 3344444445555555554443333322 1110 1112679999999999999875433 333444444445566543
No 436
>PRK07773 replicative DNA helicase; Validated
Probab=90.47 E-value=1.1 Score=51.10 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=70.0
Q ss_pred HHHHHHHHcC----CCEEEEcCCCchHHHHHHHhH----hcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecC-CC
Q 010884 44 LDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQ 112 (498)
Q Consensus 44 ~~~i~~i~~g----~dvlv~apTG~GKTl~~~l~~----l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~~-~~ 112 (498)
...++.+..| .=+++.|++|+|||...+--+ ...+..+++++-- .=..|.+.++.. .+++...+.. ..
T Consensus 204 ~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlE-ms~~ql~~R~~s~~~~i~~~~i~~g~l 282 (886)
T PRK07773 204 FTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLE-MSKEQLVMRLLSAEAKIKLSDMRSGRM 282 (886)
T ss_pred hhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecC-CCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 3445555443 236778899999995433211 2234566666521 112344444443 2333222222 12
Q ss_pred CHHHHHHHHHHHhcCCCcccEEEE-CcccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CCh-HHHHHHHHHHH
Q 010884 113 TMQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSYRKLSSLRN 189 (498)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-~~~~~l~~l~~ 189 (498)
.......+......-. ...+.+. +| .+.-......+........+++||||=.+.|..-+. +-| ..+..+.+-++
T Consensus 283 ~~~~~~~~~~a~~~l~-~~~i~i~d~~-~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK 360 (886)
T PRK07773 283 SDDDWTRLARAMGEIS-EAPIFIDDTP-NLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLK 360 (886)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEECCC-CCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHH
Confidence 2222222222111110 1223221 22 122223444444444445699999999999864211 112 12222222111
Q ss_pred hC---CCCCEEEEeecC
Q 010884 190 YL---PDVPILALTATA 203 (498)
Q Consensus 190 ~~---~~~~~l~lSAT~ 203 (498)
.+ -++|++++|-.-
T Consensus 361 ~lAkel~vpvi~lsQLn 377 (886)
T PRK07773 361 LLAKELEVPVVALSQLS 377 (886)
T ss_pred HHHHHHCCcEEEecccC
Confidence 11 278888888653
No 437
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=90.35 E-value=0.68 Score=47.97 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=55.4
Q ss_pred cEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-----cccc----cccCC
Q 010884 260 CAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG----IDRKD 326 (498)
Q Consensus 260 ~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-----~~~G----iD~p~ 326 (498)
-++|+++||+-|.++.++|.. -++.+..+.|||....+++++++ ..+|+|||+- +..+ =++.+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 489999999999999999976 48999999999999888877776 6779999962 1111 14556
Q ss_pred ccEEEEeC
Q 010884 327 VRLVCHFN 334 (498)
Q Consensus 327 v~~VI~~~ 334 (498)
|+++|.-.
T Consensus 341 vkcLVlDE 348 (731)
T KOG0347|consen 341 VKCLVLDE 348 (731)
T ss_pred ceEEEEcc
Confidence 77777443
No 438
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.33 E-value=3.7 Score=41.17 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
.+++.||+|+|||...
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 439
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.33 E-value=0.48 Score=47.22 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=25.6
Q ss_pred HHcCCCEEEEcCCCchHHHH--HHHhHhcCCCeEEEeCcHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~--~~l~~l~~~~~~lvl~P~~~L 90 (498)
+..+++++++++||||||.. +++..+....+++++=-+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 44567999999999999953 223333344555555444444
No 440
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.29 E-value=1.4 Score=43.55 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHH-H--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHH
Q 010884 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (498)
Q Consensus 46 ~i~~i~~-g-----~dvlv~apTG~GKTl~~~-l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (498)
.++.++. | +-+.+.+|+|+|||...+ + -+...++.++++..--++-.. .++++|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~----------- 107 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI----------- 107 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH-----------
Confidence 4566665 3 457889999999995433 1 222356778888665555332 344455431
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
-++++..|... ...+..+........+++||||=+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 --------------DNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 12333333321 1122333333444568999999887654
No 441
>PRK09087 hypothetical protein; Validated
Probab=90.25 E-value=3.6 Score=38.53 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
+..+++.+|+|+|||-..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3458999999999995433
No 442
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.22 E-value=2.5 Score=47.85 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.+.++++|+|+|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 588999999999996543
No 443
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.99 E-value=2.4 Score=42.29 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=40.1
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
.--++|+|-|+.+-+.+...-+.+.++..+... +.-.+.++++..+... ...++...+.++
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~y---~~n~g~~~i~~l 175 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQY---LINTGTLEIVVL 175 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccccHHHh---hcccCCCCceEE
Confidence 345799999999998876655666666655543 2446889999877653 333455555443
No 444
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.99 E-value=0.51 Score=44.24 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q 93 (498)
++|.|+.|+|||.. +...+...-.+.+..|+..+..+
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~~~~~~~~~~~~~~~~~~~ 37 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLLKDRLVVTVISPTIELYTE 37 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHHHhccccccccccceeccc
Confidence 37899999999963 33333333222333455555443
No 445
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.99 E-value=1.2 Score=48.06 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=25.7
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 204 (498)
.+..+++||||+|.+..-. ...|.......|..-++.|.+|-.
T Consensus 125 ~~~~KVvIIdEad~Lt~~a------~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA------FNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred cCCCEEEEEeChhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCCh
Confidence 3456799999999987521 234444445444444555555543
No 446
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.92 E-value=1.7 Score=40.90 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred HHcCC-CEEEEcCCCchHHHHHH--HhHhcCCCeEEEeCc
Q 010884 50 VLSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSP 86 (498)
Q Consensus 50 i~~g~-dvlv~apTG~GKTl~~~--l~~l~~~~~~lvl~P 86 (498)
+..|+ -+.++++.|||||.... +..+.....++|+.|
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~ 86 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID 86 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec
Confidence 44555 67889999999997765 222333444544443
No 447
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=89.84 E-value=1.3 Score=43.78 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHH-HHHHhH-hc-------CCCeEEEeCcHH
Q 010884 46 AIQAVLSG-----RDCFCLMPTGGGKSM-CYQIPA-LA-------KPGIVLVVSPLI 88 (498)
Q Consensus 46 ~i~~i~~g-----~dvlv~apTG~GKTl-~~~l~~-l~-------~~~~~lvl~P~~ 88 (498)
.++.++.| .-+.+.+|+|+|||. |.++.. .+ .++.+++|.---
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 45666654 456799999999994 433322 11 246788886443
No 448
>CHL00195 ycf46 Ycf46; Provisional
Probab=89.80 E-value=2.5 Score=44.42 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||+..-
T Consensus 260 kGILL~GPpGTGKTllAk 277 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999997653
No 449
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.79 E-value=0.057 Score=58.46 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHhc---CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCC-Ce-EEEEeCc
Q 010884 243 DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVA 317 (498)
Q Consensus 243 ~~~~~~l~~~l~~~---~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~-vlvaT~a 317 (498)
..++..+..++... ...++|||+.-..-+..+...|...|+....|.|.|+.+.|...+..|..+. .. .+++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 34555565555421 1248999999999999999999999999999999999999999999999543 22 4678999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEE
Q 010884 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (498)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~ 360 (498)
.+.|+|+--..+|+..|+=+|+..--|.+-||.|-|+...+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999998765554
No 450
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.72 E-value=1.4 Score=47.64 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
-+++.+|+|+|||.++.+
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 388999999999976544
No 451
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.69 E-value=1.4 Score=41.56 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=65.6
Q ss_pred CCceEeecCCCCHHHHHHHHHHHHcCC----CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcC-CCCCCc
Q 010884 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (498)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRag-R~g~~~ 356 (498)
++.+...+++.+... -.|.++. ..|+|.-+.+++|+-+++........-++...++.|+.=-.| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455556665443322 2344333 679999999999999999999999999999999999877677 667678
Q ss_pred eEEEEEccchHHHHHHHHH
Q 010884 357 KSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 357 ~~~~~~~~~d~~~~~~~~~ 375 (498)
.|-+|.+++-...+..+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 8888887765555555543
No 452
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.68 E-value=8.4 Score=34.38 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.7
Q ss_pred HhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
......+..++||+||+-....+|.--. ..+..+.+..|.--=+.+|+.-.|..
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~p~~ 143 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGCPQD 143 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 3334456799999999998888884222 34445556666655677777765553
No 453
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.63 E-value=1.2 Score=48.39 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=30.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 209 (498)
+..+++||||||.++.. ....|.......|..-+++|++|-...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred CCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 45679999999998752 234555555555655566777765444433
No 454
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.57 E-value=2 Score=39.53 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=22.4
Q ss_pred CCCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcH
Q 010884 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~ 87 (498)
|+-+.+.+|+|+|||...+-.+ ...+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4567899999999996443222 2344566666553
No 455
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.56 E-value=3 Score=47.25 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.+.++.+|+|+|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997543
No 456
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.53 E-value=3.2 Score=35.28 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 010884 56 CFCLMPTGGGKSMCY 70 (498)
Q Consensus 56 vlv~apTG~GKTl~~ 70 (498)
++++||+|+|||...
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999644
No 457
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.48 E-value=0.71 Score=46.75 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 157 ~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 458
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.31 E-value=1.9 Score=40.02 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHH
Q 010884 53 GRDCFCLMPTGGGKSMC 69 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~ 69 (498)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36788899999999953
No 459
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=89.30 E-value=0.26 Score=53.58 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=42.1
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEec
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (498)
.++++.||||+|||..+.+|.+.. ++.+||+=|--++..-.....++ .|-.+..++
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 579999999999999999998764 67888888999987555444433 455555444
No 460
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.17 E-value=0.87 Score=43.82 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHcC-C-CEEEEcCCCchHHHH
Q 010884 39 FRDKQLDAIQAVLSG-R-DCFCLMPTGGGKSMC 69 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g-~-dvlv~apTG~GKTl~ 69 (498)
+.+.|.+.+..++.. + -+++.+|||+|||..
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 457788888776643 3 578999999999964
No 461
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=1.5 Score=44.00 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
+++++.+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999865
No 462
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.86 E-value=1.9 Score=46.22 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.9
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
-.++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976644
No 463
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.78 E-value=2.6 Score=38.45 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=51.3
Q ss_pred CCccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-----cccc-cccCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 326 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-----~~~G-iD~p~ 326 (498)
.+.++||.++++.-+.+.++.+... ++.+..++|+.+..++.... .+..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999888887776553 67888999999876654332 266789999952 2222 45566
Q ss_pred ccEEEEeC
Q 010884 327 VRLVCHFN 334 (498)
Q Consensus 327 v~~VI~~~ 334 (498)
++++|.-.
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 67666433
No 464
>PF05729 NACHT: NACHT domain
Probab=88.77 E-value=2.1 Score=37.24 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=23.6
Q ss_pred cEEEEeccccccccCCC--ChHHHHHHHHHHHh--CCCCCEEEEeec
Q 010884 160 NLVAIDEAHCISSWGHD--FRPSYRKLSSLRNY--LPDVPILALTAT 202 (498)
Q Consensus 160 ~~iViDEaH~i~~~g~~--fr~~~~~l~~l~~~--~~~~~~l~lSAT 202 (498)
-++|||=.+.+..-... -.+....+..+... .++.+++..|.+
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 45999999998763221 11222335455554 556665555443
No 465
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=88.75 E-value=1.9 Score=41.97 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=20.9
Q ss_pred HHHHHHHHHH-cCCCEEEEcCCCchHHHHHH
Q 010884 42 KQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 42 ~Q~~~i~~i~-~g~dvlv~apTG~GKTl~~~ 71 (498)
.|-+.|+... +|..+++.++.|.|||+..+
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL 107 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLL 107 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHH
Confidence 4555666544 45567888999999996543
No 466
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.70 E-value=4.1 Score=42.54 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHHcC-----CCEEEEcCCCchHHHHHH-HhH-h-cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 45 ~~i~~i~~g-----~dvlv~apTG~GKTl~~~-l~~-l-~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.-++.++.| .-+++.+++|+|||...+ +.. + ..++++++++.--. ..|...++.++|+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~ 146 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGL 146 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCC
Confidence 356666653 457889999999996433 211 2 33467888876433 3455555555553
No 467
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=88.60 E-value=2.9 Score=45.75 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 186 ~gill~G~~G~GKt~~~~~ 204 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKA 204 (644)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 468
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.51 E-value=2.6 Score=43.99 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
.+++.||.|+|||.++..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999976543
No 469
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.39 E-value=1.5 Score=40.76 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.3
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
-++++.+|+|+|||.+.+.
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 3799999999999987654
No 470
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.37 E-value=0.51 Score=45.51 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHH-HHcCCCEEEEcCCCchHHHHH--HHhHhcCC-CeEEEeCcHHHH
Q 010884 43 QLDAIQA-VLSGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (498)
Q Consensus 43 Q~~~i~~-i~~g~dvlv~apTG~GKTl~~--~l~~l~~~-~~~lvl~P~~~L 90 (498)
..+.+.. +..+..+++.||||||||... ++..+... ..++++-...++
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred HHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3334443 334678999999999999542 33334445 667776655554
No 471
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.16 E-value=0.44 Score=45.85 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=12.7
Q ss_pred CEEEEcCCCchHHHH
Q 010884 55 DCFCLMPTGGGKSMC 69 (498)
Q Consensus 55 dvlv~apTG~GKTl~ 69 (498)
=++|.+|||||||.+
T Consensus 127 LILVTGpTGSGKSTT 141 (353)
T COG2805 127 LILVTGPTGSGKSTT 141 (353)
T ss_pred eEEEeCCCCCcHHHH
Confidence 378899999999954
No 472
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=1.1 Score=43.69 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.8
Q ss_pred CCEEEEcCCCchHHH
Q 010884 54 RDCFCLMPTGGGKSM 68 (498)
Q Consensus 54 ~dvlv~apTG~GKTl 68 (498)
+=+++.+|+|+|||.
T Consensus 178 RliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTS 192 (423)
T ss_pred eEEEEeCCCCCChhH
Confidence 457899999999993
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.11 E-value=3.4 Score=46.63 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+++++++|+|.|||....
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997654
No 474
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.94 E-value=2.6 Score=41.98 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=30.0
Q ss_pred cCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHH
Q 010884 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 212 (498)
.+..+++||||||.+..-. -..|.+....-|+.-+++|+++-...+...+.
T Consensus 108 ~~~~kvviI~~a~~~~~~a------~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA------ANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred ccCceEEEeehHhhhCHHH------HHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 4557899999999986522 23444444444544456666665444444333
No 475
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.85 E-value=3.8 Score=37.98 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHHH-HhH--hcCCCeEEEeC
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVS 85 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl~~~-l~~--l~~~~~~lvl~ 85 (498)
.++.++. |.-+++.+++|+|||...+ +.. ...+..++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566664 3457899999999995432 221 23456777773
No 476
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=87.81 E-value=1.7 Score=43.36 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=25.8
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHH-HHHHhH-hc-------CCCeEEEeCcH
Q 010884 46 AIQAVLSG-----RDCFCLMPTGGGKSM-CYQIPA-LA-------KPGIVLVVSPL 87 (498)
Q Consensus 46 ~i~~i~~g-----~dvlv~apTG~GKTl-~~~l~~-l~-------~~~~~lvl~P~ 87 (498)
.++.++.| .-+.+.+|+|+|||. |.++.. .+ ..+.+++|..-
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 35555554 346799999999994 444432 11 13578888653
No 477
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.72 E-value=1.8 Score=47.12 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=53.0
Q ss_pred CccEEEEeCccchHHHHHHHHHh-----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC-----ccccc-cccCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA-----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~-----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~-----a~~~G-iD~p~ 326 (498)
...+||.|+|++-+.++++.+.. .++.+..+||+.+...+...+ ....+|||+|. .+.++ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 45689999999999999887764 278889999998766543332 34578999994 33333 77888
Q ss_pred ccEEEEe
Q 010884 327 VRLVCHF 333 (498)
Q Consensus 327 v~~VI~~ 333 (498)
+++||.-
T Consensus 150 l~~lVlD 156 (629)
T PRK11634 150 LSGLVLD 156 (629)
T ss_pred ceEEEec
Confidence 8888843
No 478
>PRK10436 hypothetical protein; Provisional
Probab=87.59 E-value=1.1 Score=46.82 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEcCCCchHHHH
Q 010884 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~ 69 (498)
+.+.|.+.+..++.. .-+++.+|||||||.+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 457788888876643 3588999999999975
No 479
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.55 E-value=0.93 Score=47.67 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHcCC--CEEEEcCCCchHHHH
Q 010884 39 FRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMC 69 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g~--dvlv~apTG~GKTl~ 69 (498)
+.+.|.+.+..+.... -+++.+|||||||.+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4578888888877543 368999999999965
No 480
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.53 E-value=3.3 Score=41.90 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
.+++.||.|+|||...
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 481
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.52 E-value=5.6 Score=45.01 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHHHHHc----C--CCEEEEcCCCchHHHHHH
Q 010884 42 KQLDAIQAVLS----G--RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 42 ~Q~~~i~~i~~----g--~dvlv~apTG~GKTl~~~ 71 (498)
.|.+.|..+.. + .+.++++|.|+|||....
T Consensus 191 Gr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 36666666542 2 489999999999997553
No 482
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=87.41 E-value=0.91 Score=45.40 Aligned_cols=32 Identities=19% Similarity=-0.073 Sum_probs=20.0
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeC
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~ 85 (498)
+-+++.+|.|+|||+..-..+-..+-..++++
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 35788999999999865443333333333333
No 483
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=87.40 E-value=8 Score=36.49 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=55.4
Q ss_pred HHHHHHH----HHHcC---CCEEEEcCCCchHHHHH--HHhHhcCCCeEEEeCcHHHHH--HHHHHHHHHcCCceeEecC
Q 010884 42 KQLDAIQ----AVLSG---RDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIALM--ENQVIGLKEKGIAGEFLSS 110 (498)
Q Consensus 42 ~Q~~~i~----~i~~g---~dvlv~apTG~GKTl~~--~l~~l~~~~~~lvl~P~~~L~--~q~~~~l~~~gi~~~~~~~ 110 (498)
.|++.+- +.+.| .++++.++-|+|||... ++..+...+.-||=++...|. .+.++.++....+...+..
T Consensus 34 ~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~D 113 (249)
T PF05673_consen 34 RQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCD 113 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEec
Confidence 4665553 34555 58999999999999542 344455667777777776663 3556666655555444433
Q ss_pred CCC-------HHHHHHHHHHHhcCCCcccEEEEC
Q 010884 111 TQT-------MQVKTKIYEDLDSGKPSLRLLYVT 137 (498)
Q Consensus 111 ~~~-------~~~~~~~~~~~~~~~~~~~~l~~t 137 (498)
..+ ...-+.+.++.....|+--++|+|
T Consensus 114 DLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 114 DLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred CCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 322 233333444444445555555554
No 484
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.38 E-value=6.5 Score=37.29 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=25.1
Q ss_pred CCEEEEcCCCchHHHHHHHhHhcC-CCeEEEeCcHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMEN 93 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~l~~-~~~~lvl~P~~~L~~q 93 (498)
++|+..+|+|+|||+.+ -+|.. ....++.+-..+|+-.
T Consensus 152 knVLFyGppGTGKTm~A--kalane~kvp~l~vkat~liGe 190 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA--KALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred ceeEEECCCCccHHHHH--HHHhcccCCceEEechHHHHHH
Confidence 78999999999999743 33332 3344555555566544
No 485
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.33 E-value=2.5 Score=44.55 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHHH-H--hHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVSPLIALMENQVIGLKEKGIA 104 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl~~~-l--~~l~~-~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (498)
.++.++. |+-+++.+|+|+|||+-.+ + -.+.+ +..+++++-- +-..+..+.+.++|..
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGWD 75 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCCC
Confidence 3455554 4678999999999995432 2 22344 5677777743 4446667777777654
No 486
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.28 E-value=6.3 Score=39.87 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=26.3
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 205 (498)
+...++||||+|.+.. .....|.+.....|...++++++.-+.
T Consensus 140 ~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 4577999999998754 222445455555555555556555443
No 487
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.16 E-value=1.7 Score=45.63 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=63.1
Q ss_pred CccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc-------ccc-ccCCccE
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-------MGI-DRKDVRL 329 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~-------~Gi-D~p~v~~ 329 (498)
.+.+||.+++++-+.+....|...|+.+..++++.+..++..++.....|+.+++++|.-.- ..+ ...++.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 34689999999999999999999999999999999999999999999999999999997421 122 4556777
Q ss_pred EEEeC
Q 010884 330 VCHFN 334 (498)
Q Consensus 330 VI~~~ 334 (498)
||.-.
T Consensus 131 iViDE 135 (470)
T TIGR00614 131 IAVDE 135 (470)
T ss_pred EEEeC
Confidence 77433
No 488
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=87.02 E-value=13 Score=38.83 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=87.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~ 156 (498)
++.++||.+=|+-++++..+.|...|+++.+++|....-++..+..+++.|. ++++++- +.|..-...
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~DvLVGI----------NLLREGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGI----------NLLREGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--ccEEEee----------hhhhccCCC
Confidence 4678999999999999999999999999999999999999999999999987 7776652 223333445
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 211 (498)
..+++|.|=+|+.-.-. ..-|..+..+++..+.. +-.+|+..-..+..+.+.+
T Consensus 513 PEVsLVAIlDADKeGFL-Rse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 513 PEVSLVAILDADKEGFL-RSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAI 565 (663)
T ss_pred cceeEEEEeecCccccc-cccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHH
Confidence 56889999889873211 01234445555544433 4456776666676655444
No 489
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=86.95 E-value=0.95 Score=50.19 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH-HH----hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY-QI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~-~l----~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (498)
.++|-|.++|.+-....+..+++|+|+|||-.. ++ ..-....+++|++-..+-+++..+.+.++.+..
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d~ 810 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVDE 810 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccch
Confidence 468899999988888889999999999999433 22 222346889999998888888877776654443
No 490
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.93 E-value=2.8 Score=44.50 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 205 (498)
+...++||||||.+..- ....|.+.....|..-.+.|++|-+.
T Consensus 116 ~~~KVvIIDEad~Lt~~------A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE------AFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred CCeEEEEEECcccCCHH------HHHHHHHHHhhcCCceEEEEEECChh
Confidence 45789999999998652 22344444444444334445555433
No 491
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=86.69 E-value=1.4 Score=51.50 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=58.4
Q ss_pred CccEEEEeCccchHHHHHHHHHhC----CCce---EeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc-ccc-cC-Cc
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-GID-RK-DV 327 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~-GiD-~p-~v 327 (498)
+.+++|.++|+.-+.++++.+.+. |+.+ ..|||+++..+|....+.+.+|..+|||+|...-. .++ +. .+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 567999999999999998888763 4443 36899999999999899999999999999985322 111 12 57
Q ss_pred cEEEEeC
Q 010884 328 RLVCHFN 334 (498)
Q Consensus 328 ~~VI~~~ 334 (498)
+++|.-+
T Consensus 201 ~~iVvDE 207 (1171)
T TIGR01054 201 DFIFVDD 207 (1171)
T ss_pred CEEEEeC
Confidence 7777544
No 492
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=1 Score=49.45 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=21.4
Q ss_pred HHHHHHHHHHc-------C--------CCEEEEcCCCchHHHH
Q 010884 42 KQLDAIQAVLS-------G--------RDCFCLMPTGGGKSMC 69 (498)
Q Consensus 42 ~Q~~~i~~i~~-------g--------~dvlv~apTG~GKTl~ 69 (498)
.|.+|+.++.. | ..+++.+|||.|||..
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 68888877653 1 2578899999999954
No 493
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.11 E-value=0.35 Score=50.48 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH--cCCCeEEEEeCccccccccCCc---cEEE---EeCCCCC----HHHHHHHHhhcCCC
Q 010884 295 KARSSVLDDWI--SSRKQVVVATVAFGMGIDRKDV---RLVC---HFNIPKS----MEAFYQESGRAGRD 352 (498)
Q Consensus 295 ~~R~~~~~~f~--~g~~~vlvaT~a~~~GiD~p~v---~~VI---~~~~p~s----~~~y~Q~~GRagR~ 352 (498)
++-+.++.... ++-+++|.+.+.+..|.|+-+. |.+. ...-.+. ...-.|-+||..|.
T Consensus 315 ~e~~lllnsled~dnpir~if~vd~lnegwdvlnlfdmr~i~rrk~~an~kk~~~~TikekQLIGRGaRY 384 (812)
T COG3421 315 EESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVLNLFDMRGIKRRKKMANDKKLAAATIKEKQLIGRGARY 384 (812)
T ss_pred HHHHHHHhhhhhcCCCeEEEEEeecccccchhhhhhhHHHHHHHHhhhcccchhhhhhhHHHHHhcccee
Confidence 33344445444 4668999999999999997543 1110 0001112 33347888888884
No 494
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.10 E-value=1.3 Score=44.39 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHH--HhHhcCCCeEEEeCcHHHH
Q 010884 39 FRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIAL 90 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~-g~dvlv~apTG~GKTl~~~--l~~l~~~~~~lvl~P~~~L 90 (498)
+.+.+.+.+..+.. +..+++.++||+|||.... +..+.....++++--..+|
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 55778888876665 4689999999999996332 2222334455665555555
No 495
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=86.00 E-value=0.8 Score=41.99 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=17.3
Q ss_pred HHcCCCEEEEcCCCchHHHHHH-HhHh
Q 010884 50 VLSGRDCFCLMPTGGGKSMCYQ-IPAL 75 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~~-l~~l 75 (498)
+..++++++.+|.|+|||+... ++.+
T Consensus 19 AaG~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 19 AAGGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp HHCC--EEEES-CCCTHHHHHHHHHHC
T ss_pred HcCCCCeEEECCCCCCHHHHHHHHHHh
Confidence 3466899999999999997654 4444
No 496
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=85.96 E-value=0.9 Score=47.63 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=15.7
Q ss_pred hhcCCccEEEEeccccccc
Q 010884 154 HSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~ 172 (498)
...++..++||||+|.++.
T Consensus 115 P~~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSK 133 (515)
T ss_pred CccccceEEEEecHHhhhH
Confidence 3356688999999999986
No 497
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.93 E-value=1.1 Score=50.00 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=14.3
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
.+++.+|||+|||..+..
T Consensus 486 ~~lf~Gp~GvGKT~lA~~ 503 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQ 503 (731)
T ss_pred eEEEECCCCccHHHHHHH
Confidence 368999999999965543
No 498
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=85.79 E-value=4.6 Score=41.36 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=24.3
Q ss_pred EEEEcCCCchHHHHHHHhH----hc--CCCeEEEeCcHHH
Q 010884 56 CFCLMPTGGGKSMCYQIPA----LA--KPGIVLVVSPLIA 89 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l~~----l~--~~~~~lvl~P~~~ 89 (498)
.++.++.|||||.+..+-+ +. .+..++|+-|+..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 43 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQN 43 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhh
Confidence 5788999999996554322 33 5667888888776
No 499
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.61 E-value=5.9 Score=36.87 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=25.3
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHH-HHhH--hcCCCeEEEeCc
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QIPA--LAKPGIVLVVSP 86 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl~~-~l~~--l~~~~~~lvl~P 86 (498)
.++.++. |.-+++.+|+|+|||... ++.. +..+..++++.-
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4556664 356789999999999543 3321 234556666643
No 500
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.57 E-value=2.9 Score=41.94 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+.-+++.+|||+|||...
T Consensus 122 ~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457889999999999643
Done!