Query 010884
Match_columns 498
No_of_seqs 360 out of 2897
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 6.3E-76 2.2E-80 626.0 43.9 407 18-439 24-434 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 8.6E-75 2.9E-79 611.1 45.0 405 15-439 2-406 (523)
3 2db3_A ATP-dependent RNA helic 100.0 2.5E-52 8.7E-57 431.3 37.0 339 15-371 56-414 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 1.2E-51 4E-56 441.7 32.7 347 21-378 27-411 (579)
5 3i5x_A ATP-dependent RNA helic 100.0 2.6E-51 9E-56 438.1 32.3 345 22-377 79-461 (563)
6 2i4i_A ATP-dependent RNA helic 100.0 1.2E-50 4.1E-55 416.6 34.4 345 15-376 15-394 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 7.1E-50 2.4E-54 410.2 39.5 345 14-377 36-395 (410)
8 1s2m_A Putative ATP-dependent 100.0 1.1E-49 3.9E-54 407.2 35.4 345 14-378 20-378 (400)
9 1xti_A Probable ATP-dependent 100.0 2.4E-49 8.2E-54 403.3 36.7 344 15-375 8-368 (391)
10 3eiq_A Eukaryotic initiation f 100.0 9.9E-50 3.4E-54 409.3 29.4 346 15-377 40-399 (414)
11 1hv8_A Putative ATP-dependent 100.0 4.9E-48 1.7E-52 389.8 38.3 340 16-378 7-358 (367)
12 3pey_A ATP-dependent RNA helic 100.0 2.1E-48 7.1E-53 396.4 34.5 338 15-375 5-367 (395)
13 3fht_A ATP-dependent RNA helic 100.0 3.2E-48 1.1E-52 397.6 35.9 345 11-377 21-392 (412)
14 2z0m_A 337AA long hypothetical 100.0 3.3E-48 1.1E-52 386.6 32.2 324 23-374 2-331 (337)
15 1fuu_A Yeast initiation factor 100.0 1E-49 3.5E-54 406.3 19.6 344 14-375 20-376 (394)
16 3oiy_A Reverse gyrase helicase 100.0 1.8E-47 6.3E-52 393.0 29.0 328 23-375 7-373 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 4.1E-48 1.4E-52 405.3 14.7 340 12-373 89-455 (479)
18 4gl2_A Interferon-induced heli 100.0 1.2E-47 4.2E-52 420.0 17.5 376 38-424 7-585 (699)
19 4a4z_A Antiviral helicase SKI2 100.0 1.7E-45 6E-50 411.9 32.0 390 22-438 24-576 (997)
20 2ykg_A Probable ATP-dependent 100.0 1.7E-45 5.9E-50 402.8 23.4 391 28-439 4-587 (696)
21 3fho_A ATP-dependent RNA helic 100.0 1.5E-46 5.1E-51 395.5 14.4 340 18-376 122-482 (508)
22 4a2p_A RIG-I, retinoic acid in 100.0 9.4E-43 3.2E-47 371.0 27.2 320 35-370 4-513 (556)
23 3l9o_A ATP-dependent RNA helic 100.0 5.5E-43 1.9E-47 394.9 25.8 338 17-377 164-610 (1108)
24 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-42 3.7E-47 380.3 27.1 328 17-368 3-391 (702)
25 4a2w_A RIG-I, retinoic acid in 100.0 8.5E-43 2.9E-47 390.2 25.7 318 33-369 243-753 (936)
26 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-41 3.9E-46 373.2 32.5 325 16-367 9-410 (715)
27 4ddu_A Reverse gyrase; topoiso 100.0 9.7E-42 3.3E-46 384.7 31.3 292 24-337 65-388 (1104)
28 2zj8_A DNA helicase, putative 100.0 3.4E-42 1.2E-46 377.4 25.9 326 17-368 3-390 (720)
29 3tbk_A RIG-I helicase domain; 100.0 8.7E-42 3E-46 363.2 26.0 316 38-371 4-513 (555)
30 2xgj_A ATP-dependent RNA helic 100.0 5.6E-41 1.9E-45 375.5 32.1 322 31-377 80-512 (1010)
31 1wp9_A ATP-dependent RNA helic 100.0 2.6E-40 8.7E-45 345.2 34.7 314 38-369 9-479 (494)
32 1gm5_A RECG; helicase, replica 100.0 3.5E-42 1.2E-46 374.1 21.0 315 23-364 354-696 (780)
33 4a2q_A RIG-I, retinoic acid in 100.0 4.3E-41 1.5E-45 372.3 29.6 323 31-370 241-754 (797)
34 2eyq_A TRCF, transcription-rep 100.0 5E-39 1.7E-43 364.8 37.7 322 19-366 585-923 (1151)
35 1tf5_A Preprotein translocase 100.0 1E-38 3.4E-43 340.9 36.0 319 32-367 78-547 (844)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 7.9E-41 2.7E-45 377.4 19.7 323 24-376 44-465 (1054)
37 4f92_B U5 small nuclear ribonu 100.0 4.9E-38 1.7E-42 366.2 32.7 328 35-378 923-1321(1724)
38 2oca_A DAR protein, ATP-depend 100.0 1.4E-39 4.6E-44 343.4 16.6 301 38-365 113-455 (510)
39 2jlq_A Serine protease subunit 100.0 2.2E-39 7.4E-44 335.7 14.0 284 35-364 1-310 (451)
40 2fwr_A DNA repair protein RAD2 100.0 4.3E-39 1.5E-43 336.2 15.7 288 38-361 93-448 (472)
41 4f92_B U5 small nuclear ribonu 100.0 1.9E-38 6.5E-43 369.7 21.3 337 25-378 65-486 (1724)
42 2wv9_A Flavivirin protease NS2 100.0 2.2E-39 7.6E-44 348.0 9.6 285 38-371 215-542 (673)
43 1yks_A Genome polyprotein [con 100.0 5.5E-39 1.9E-43 331.3 10.8 277 49-374 4-311 (440)
44 2whx_A Serine protease/ntpase/ 100.0 1.6E-38 5.4E-43 339.3 12.7 306 22-375 157-491 (618)
45 1nkt_A Preprotein translocase 100.0 3.8E-35 1.3E-39 312.8 35.5 325 29-367 103-619 (922)
46 2fsf_A Preprotein translocase 100.0 4.1E-36 1.4E-40 319.9 27.2 323 28-367 65-585 (853)
47 3h1t_A Type I site-specific re 100.0 4.5E-36 1.5E-40 321.9 25.4 305 38-364 178-557 (590)
48 2xau_A PRE-mRNA-splicing facto 100.0 1.5E-36 5.1E-41 331.9 21.6 327 14-367 71-445 (773)
49 2z83_A Helicase/nucleoside tri 100.0 9.2E-38 3.1E-42 324.1 10.9 269 47-365 15-313 (459)
50 3o8b_A HCV NS3 protease/helica 100.0 1.6E-37 5.5E-42 329.0 12.4 278 38-369 217-518 (666)
51 2v6i_A RNA helicase; membrane, 100.0 1.3E-36 4.6E-41 312.8 15.9 267 52-363 1-288 (431)
52 3dmq_A RNA polymerase-associat 100.0 6E-35 2.1E-39 327.2 29.8 316 37-363 152-611 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 1.2E-34 4E-39 310.5 26.3 289 48-379 150-458 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 3.6E-33 1.2E-37 293.5 24.2 299 37-361 36-447 (500)
55 3jux_A Protein translocase sub 100.0 1.3E-30 4.6E-35 272.2 36.7 322 28-367 66-589 (822)
56 1z3i_X Similar to RAD54-like; 100.0 3.5E-30 1.2E-34 277.7 33.1 310 38-361 55-522 (644)
57 3mwy_W Chromo domain-containin 100.0 1.5E-30 5.3E-35 287.3 22.1 311 37-361 235-678 (800)
58 1c4o_A DNA nucleotide excision 100.0 1.2E-28 4E-33 265.8 28.9 201 160-374 327-559 (664)
59 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 7.7E-28 2.6E-32 268.1 21.8 324 21-363 248-707 (1038)
60 2hjv_A ATP-dependent RNA helic 100.0 3.3E-27 1.1E-31 210.1 20.0 151 226-377 4-154 (163)
61 2d7d_A Uvrabc system protein B 100.0 1.3E-26 4.4E-31 249.7 28.5 169 193-373 386-564 (661)
62 3fe2_A Probable ATP-dependent 100.0 4.6E-27 1.6E-31 223.1 20.6 194 14-224 28-236 (242)
63 3iuy_A Probable ATP-dependent 99.9 7.3E-27 2.5E-31 219.6 18.7 187 20-223 25-226 (228)
64 2rb4_A ATP-dependent RNA helic 99.9 1.2E-26 4.2E-31 208.9 19.3 148 230-377 6-159 (175)
65 3ly5_A ATP-dependent RNA helic 99.9 1.7E-26 6E-31 221.7 19.5 184 15-215 52-254 (262)
66 1q0u_A Bstdead; DEAD protein, 99.9 2E-26 6.8E-31 215.3 18.2 197 16-231 5-217 (219)
67 3eaq_A Heat resistant RNA depe 99.9 2.1E-26 7.1E-31 213.9 17.9 137 242-378 15-151 (212)
68 2pl3_A Probable ATP-dependent 99.9 3.3E-26 1.1E-30 216.3 19.4 191 14-224 24-231 (236)
69 1t5i_A C_terminal domain of A 99.9 3.3E-26 1.1E-30 205.4 18.3 145 231-376 5-150 (172)
70 1fuk_A Eukaryotic initiation f 99.9 1.7E-26 5.8E-31 205.9 15.6 145 232-376 4-148 (165)
71 3ber_A Probable ATP-dependent 99.9 4.5E-26 1.5E-30 217.2 19.0 193 13-224 41-246 (249)
72 1vec_A ATP-dependent RNA helic 99.9 7.3E-26 2.5E-30 209.2 19.8 189 15-222 3-204 (206)
73 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.4E-26 1.5E-30 207.0 17.1 148 228-376 16-164 (185)
74 2oxc_A Probable ATP-dependent 99.9 9.5E-26 3.3E-30 212.3 18.5 191 14-223 23-226 (230)
75 1t6n_A Probable ATP-dependent 99.9 1.5E-25 5.2E-30 209.4 19.2 192 15-223 14-218 (220)
76 1qde_A EIF4A, translation init 99.9 1.4E-25 4.7E-30 210.2 18.0 190 14-223 13-214 (224)
77 2gxq_A Heat resistant RNA depe 99.9 3.5E-25 1.2E-29 204.7 20.0 189 17-223 3-203 (207)
78 3bor_A Human initiation factor 99.9 2E-25 6.9E-30 211.1 17.9 192 14-223 29-232 (237)
79 2p6n_A ATP-dependent RNA helic 99.9 2E-25 6.9E-30 203.5 17.1 144 229-374 27-171 (191)
80 3dkp_A Probable ATP-dependent 99.9 7.9E-26 2.7E-30 215.0 13.5 190 21-225 35-240 (245)
81 1wrb_A DJVLGB; RNA helicase, D 99.9 1.8E-25 6.2E-30 213.5 15.1 195 14-224 22-238 (253)
82 3i32_A Heat resistant RNA depe 99.9 1.1E-24 3.7E-29 212.0 18.9 136 243-378 13-148 (300)
83 3fmo_B ATP-dependent RNA helic 99.9 4.4E-25 1.5E-29 216.0 15.0 190 12-224 89-296 (300)
84 2yjt_D ATP-dependent RNA helic 99.9 3.9E-27 1.3E-31 211.1 0.0 146 230-375 2-147 (170)
85 2ipc_A Preprotein translocase 99.9 4.3E-22 1.5E-26 211.9 35.5 319 27-367 69-700 (997)
86 2vl7_A XPD; helicase, unknown 99.9 1.4E-22 4.9E-27 213.9 22.2 316 33-364 3-520 (540)
87 3crv_A XPD/RAD3 related DNA he 99.8 1.6E-19 5.3E-24 191.3 26.6 313 38-364 3-530 (551)
88 3b6e_A Interferon-induced heli 99.8 6.1E-20 2.1E-24 170.3 9.4 162 34-202 29-216 (216)
89 1z5z_A Helicase of the SNF2/RA 99.8 6.1E-19 2.1E-23 169.3 10.2 123 243-365 95-224 (271)
90 4a15_A XPD helicase, ATP-depen 99.8 3.4E-17 1.2E-21 174.9 24.1 162 195-364 377-583 (620)
91 1rif_A DAR protein, DNA helica 99.8 3E-18 1E-22 166.1 12.0 145 38-207 113-266 (282)
92 2fz4_A DNA repair protein RAD2 99.7 6.6E-18 2.3E-22 159.2 13.1 139 38-207 93-232 (237)
93 3llm_A ATP-dependent RNA helic 99.7 3.5E-16 1.2E-20 147.3 10.9 152 38-207 61-222 (235)
94 1w36_D RECD, exodeoxyribonucle 98.5 9.1E-07 3.1E-11 94.2 14.3 77 23-99 134-217 (608)
95 4b3f_X DNA-binding protein smu 98.1 1.6E-05 5.4E-10 85.5 13.3 71 38-108 189-263 (646)
96 2gk6_A Regulator of nonsense t 98.1 3.1E-05 1.1E-09 82.8 14.0 71 36-106 178-252 (624)
97 2xzl_A ATP-dependent helicase 97.9 6.3E-05 2.1E-09 82.4 13.0 69 37-105 359-431 (802)
98 2wjy_A Regulator of nonsense t 97.9 7.2E-05 2.5E-09 81.8 12.8 70 37-106 355-428 (800)
99 3upu_A ATP-dependent DNA helic 97.7 0.00011 3.9E-09 75.4 10.4 64 34-97 21-93 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.6 0.00016 5.6E-09 76.1 9.6 59 38-96 189-250 (574)
101 3hgt_A HDA1 complex subunit 3; 97.5 0.0012 4E-08 63.6 13.1 126 244-374 109-246 (328)
102 3lfu_A DNA helicase II; SF1 he 97.4 0.03 1E-06 59.7 24.0 63 37-101 8-77 (647)
103 3ec2_A DNA replication protein 96.8 0.0052 1.8E-07 54.0 9.7 30 41-70 17-55 (180)
104 3vkw_A Replicase large subunit 96.8 0.0031 1.1E-07 63.5 8.3 45 55-101 163-207 (446)
105 2o0j_A Terminase, DNA packagin 96.4 0.036 1.2E-06 55.0 13.0 63 38-100 163-230 (385)
106 2qby_B CDC6 homolog 3, cell di 96.1 0.038 1.3E-06 54.6 12.2 17 54-70 46-62 (384)
107 3te6_A Regulatory protein SIR3 96.1 0.08 2.7E-06 51.0 13.7 18 53-70 45-62 (318)
108 2chg_A Replication factor C sm 95.9 0.083 2.8E-06 47.2 12.0 17 54-70 39-55 (226)
109 1a5t_A Delta prime, HOLB; zinc 95.7 0.0092 3.1E-07 58.3 5.1 33 39-71 3-42 (334)
110 2b8t_A Thymidine kinase; deoxy 95.7 0.0082 2.8E-07 54.9 4.3 36 53-88 12-50 (223)
111 3vfd_A Spastin; ATPase, microt 95.6 0.039 1.3E-06 55.0 9.4 22 53-74 148-169 (389)
112 3cpe_A Terminase, DNA packagin 95.5 0.092 3.2E-06 55.4 12.2 63 38-100 163-230 (592)
113 3eie_A Vacuolar protein sortin 95.4 0.056 1.9E-06 52.3 9.7 57 13-72 13-70 (322)
114 2kjq_A DNAA-related protein; s 95.4 0.013 4.6E-07 49.8 4.6 18 52-69 35-52 (149)
115 3bos_A Putative DNA replicatio 95.4 0.034 1.2E-06 50.7 7.8 18 53-70 52-69 (242)
116 4a1f_A DNAB helicase, replicat 95.4 0.032 1.1E-06 54.3 7.8 150 46-203 35-206 (338)
117 3syl_A Protein CBBX; photosynt 95.3 0.19 6.6E-06 47.8 13.1 17 54-70 68-84 (309)
118 3co5_A Putative two-component 95.3 0.078 2.7E-06 44.5 9.1 20 51-70 25-44 (143)
119 3u61_B DNA polymerase accessor 95.3 0.055 1.9E-06 52.2 9.0 42 158-205 105-147 (324)
120 2r6a_A DNAB helicase, replicat 95.2 0.059 2E-06 54.9 9.4 125 46-172 192-327 (454)
121 2q6t_A DNAB replication FORK h 95.2 0.038 1.3E-06 56.1 8.0 153 46-202 189-362 (444)
122 1d2n_A N-ethylmaleimide-sensit 95.1 0.057 1.9E-06 50.7 8.2 18 54-71 65-82 (272)
123 1fnn_A CDC6P, cell division co 95.0 0.17 5.8E-06 49.8 12.0 16 55-70 46-61 (389)
124 1l8q_A Chromosomal replication 95.0 0.086 2.9E-06 50.9 9.4 19 53-71 37-55 (324)
125 2p65_A Hypothetical protein PF 94.9 0.12 4E-06 44.9 9.4 18 53-70 43-60 (187)
126 2w58_A DNAI, primosome compone 94.9 0.18 6.2E-06 44.7 10.7 17 54-70 55-71 (202)
127 3h4m_A Proteasome-activating n 94.9 0.064 2.2E-06 50.6 8.0 55 15-72 14-70 (285)
128 1jbk_A CLPB protein; beta barr 94.9 0.23 7.9E-06 43.0 11.2 17 54-70 44-60 (195)
129 1sxj_A Activator 1 95 kDa subu 94.8 0.065 2.2E-06 55.5 8.6 43 158-204 148-190 (516)
130 1gm5_A RECG; helicase, replica 94.8 0.067 2.3E-06 58.2 8.8 79 258-336 417-500 (780)
131 2v1u_A Cell division control p 94.8 0.17 5.8E-06 49.7 11.2 18 53-70 44-61 (387)
132 3cf0_A Transitional endoplasmi 94.8 0.2 6.9E-06 47.8 11.4 20 53-72 49-68 (301)
133 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.15 5.3E-06 49.2 10.5 19 54-72 46-64 (322)
134 2zpa_A Uncharacterized protein 94.7 0.048 1.6E-06 57.7 7.2 54 38-91 175-230 (671)
135 1sxj_B Activator 1 37 kDa subu 94.7 0.11 3.6E-06 49.9 9.2 16 55-70 44-59 (323)
136 3pvs_A Replication-associated 94.7 0.048 1.6E-06 55.4 6.9 19 54-72 51-69 (447)
137 2qp9_X Vacuolar protein sortin 94.5 0.11 3.7E-06 51.0 8.8 19 54-72 85-103 (355)
138 2orw_A Thymidine kinase; TMTK, 94.5 0.093 3.2E-06 46.2 7.5 36 53-88 3-41 (184)
139 2zan_A Vacuolar protein sortin 94.4 0.15 5.1E-06 51.7 10.0 19 54-72 168-186 (444)
140 3b9p_A CG5977-PA, isoform A; A 94.4 0.23 7.9E-06 47.0 10.8 20 53-72 54-73 (297)
141 1uaa_A REP helicase, protein ( 94.2 0.039 1.3E-06 59.3 5.4 62 38-101 2-70 (673)
142 1pjr_A PCRA; DNA repair, DNA r 94.1 0.059 2E-06 58.4 6.5 63 37-101 10-79 (724)
143 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.19 6.4E-06 46.6 9.1 19 53-71 39-57 (262)
144 2dr3_A UPF0273 protein PH0284; 93.9 0.53 1.8E-05 42.9 11.9 51 52-103 22-75 (247)
145 3bh0_A DNAB-like replicative h 93.8 0.8 2.7E-05 43.9 13.4 123 45-172 56-195 (315)
146 1njg_A DNA polymerase III subu 93.8 0.46 1.6E-05 42.7 11.3 16 55-70 47-62 (250)
147 2r2a_A Uncharacterized protein 93.8 0.031 1.1E-06 50.1 2.9 17 55-71 7-23 (199)
148 2qgz_A Helicase loader, putati 93.8 0.094 3.2E-06 50.4 6.5 18 53-70 152-169 (308)
149 1g5t_A COB(I)alamin adenosyltr 93.8 0.15 5.1E-06 45.3 7.3 132 54-207 29-166 (196)
150 2gno_A DNA polymerase III, gam 93.7 0.059 2E-06 51.7 5.1 44 157-206 81-124 (305)
151 2qby_A CDC6 homolog 1, cell di 93.7 0.25 8.6E-06 48.4 9.9 18 53-70 45-62 (386)
152 3u4q_A ATP-dependent helicase/ 93.7 0.082 2.8E-06 60.8 7.0 61 38-100 10-79 (1232)
153 2chq_A Replication factor C sm 93.6 0.13 4.5E-06 49.1 7.3 51 6-70 5-55 (319)
154 3d8b_A Fidgetin-like protein 1 93.5 0.22 7.5E-06 48.8 8.9 20 53-72 117-136 (357)
155 3oiy_A Reverse gyrase helicase 93.5 0.17 5.6E-06 50.6 8.1 79 257-335 63-148 (414)
156 1xx6_A Thymidine kinase; NESG, 93.4 0.07 2.4E-06 47.4 4.5 36 53-88 8-46 (191)
157 1sxj_C Activator 1 40 kDa subu 93.2 0.28 9.6E-06 47.6 9.1 41 159-205 111-151 (340)
158 2z4s_A Chromosomal replication 93.2 0.23 8E-06 50.2 8.8 18 54-71 131-148 (440)
159 1iqp_A RFCS; clamp loader, ext 93.2 0.38 1.3E-05 45.9 10.0 43 158-206 110-152 (327)
160 2j9r_A Thymidine kinase; TK1, 93.2 0.16 5.4E-06 45.8 6.6 36 54-89 29-67 (214)
161 1sxj_D Activator 1 41 kDa subu 93.2 0.91 3.1E-05 43.8 12.8 17 54-70 59-75 (353)
162 3pfi_A Holliday junction ATP-d 93.1 0.4 1.4E-05 46.3 10.0 19 54-72 56-74 (338)
163 1xp8_A RECA protein, recombina 93.0 0.75 2.6E-05 45.2 11.7 86 1-87 4-111 (366)
164 1w5s_A Origin recognition comp 92.9 0.81 2.8E-05 45.2 12.3 17 54-70 51-69 (412)
165 3kl4_A SRP54, signal recogniti 92.9 1.1 3.9E-05 44.9 13.1 50 157-208 178-228 (433)
166 2cvh_A DNA repair and recombin 92.9 0.13 4.5E-06 46.1 5.8 40 46-85 8-52 (220)
167 1lv7_A FTSH; alpha/beta domain 92.7 0.57 2E-05 43.2 10.0 19 53-71 45-63 (257)
168 1jr3_A DNA polymerase III subu 92.6 1.2 4E-05 43.4 12.8 43 157-205 118-160 (373)
169 3t15_A Ribulose bisphosphate c 92.5 0.21 7.3E-06 47.5 6.9 18 54-71 37-54 (293)
170 3bgw_A DNAB-like replicative h 92.5 1 3.5E-05 45.5 12.3 152 46-203 186-360 (444)
171 3hu3_A Transitional endoplasmi 92.5 0.42 1.4E-05 49.0 9.4 19 54-72 239-257 (489)
172 4b4t_J 26S protease regulatory 92.4 0.23 7.9E-06 49.3 7.1 55 14-72 144-201 (405)
173 3dm5_A SRP54, signal recogniti 92.3 1.8 6.1E-05 43.5 13.5 122 55-209 102-230 (443)
174 4ddu_A Reverse gyrase; topoiso 92.2 0.24 8.2E-06 56.1 7.8 79 257-335 120-205 (1104)
175 2w0m_A SSO2452; RECA, SSPF, un 92.0 1.8 6.3E-05 38.6 12.5 33 53-85 23-58 (235)
176 4b4t_L 26S protease subunit RP 91.9 0.38 1.3E-05 48.4 8.1 57 13-72 176-234 (437)
177 2orv_A Thymidine kinase; TP4A 91.3 0.5 1.7E-05 43.0 7.5 38 52-89 18-58 (234)
178 4b4t_H 26S protease regulatory 91.2 0.26 9E-06 49.7 6.1 57 13-72 204-262 (467)
179 1sxj_E Activator 1 40 kDa subu 91.2 0.61 2.1E-05 45.2 8.8 17 55-71 38-54 (354)
180 4b4t_I 26S protease regulatory 91.2 0.33 1.1E-05 48.5 6.7 55 13-72 177-235 (437)
181 1vma_A Cell division protein F 90.8 3.5 0.00012 39.2 13.4 32 54-85 105-139 (306)
182 1v5w_A DMC1, meiotic recombina 90.6 0.44 1.5E-05 46.4 7.0 43 46-88 110-166 (343)
183 2hjv_A ATP-dependent RNA helic 90.5 0.94 3.2E-05 38.6 8.3 59 77-137 34-92 (163)
184 2eyq_A TRCF, transcription-rep 90.5 1.2 4.2E-05 50.6 11.4 78 257-334 651-733 (1151)
185 2rb4_A ATP-dependent RNA helic 90.5 0.91 3.1E-05 39.2 8.3 79 57-138 12-92 (175)
186 1r6b_X CLPA protein; AAA+, N-t 90.5 1.2 4E-05 48.4 10.9 18 53-70 207-224 (758)
187 1nlf_A Regulatory protein REPA 90.4 2.5 8.6E-05 39.4 12.0 21 50-70 27-47 (279)
188 2p6n_A ATP-dependent RNA helic 90.1 2.3 7.7E-05 37.3 10.7 72 63-137 39-111 (191)
189 2qen_A Walker-type ATPase; unk 89.8 4.8 0.00016 38.4 13.8 17 53-69 31-47 (350)
190 3cf2_A TER ATPase, transitiona 89.8 0.51 1.8E-05 51.2 7.2 69 14-83 473-541 (806)
191 1n0w_A DNA repair protein RAD5 89.8 2.5 8.5E-05 38.2 11.1 19 53-71 24-42 (243)
192 1ixz_A ATP-dependent metallopr 89.6 0.89 3.1E-05 41.8 8.0 18 54-71 50-67 (254)
193 1t5i_A C_terminal domain of A 89.3 1.3 4.5E-05 38.1 8.3 60 77-138 30-89 (172)
194 2zts_A Putative uncharacterize 89.0 0.077 2.6E-06 48.8 -0.0 56 146-202 123-181 (251)
195 3ber_A Probable ATP-dependent 88.8 1.8 6.1E-05 39.7 9.4 72 257-332 110-192 (249)
196 3eaq_A Heat resistant RNA depe 88.8 3.9 0.00013 36.4 11.4 61 76-138 29-89 (212)
197 1fuk_A Eukaryotic initiation f 88.7 1.2 4.1E-05 37.9 7.6 60 77-138 29-88 (165)
198 1t6n_A Probable ATP-dependent 88.3 1.4 4.9E-05 39.2 8.2 72 258-332 82-164 (220)
199 1cr0_A DNA primase/helicase; R 88.3 6.9 0.00024 36.6 13.4 40 46-85 24-71 (296)
200 2fna_A Conserved hypothetical 88.0 7.2 0.00025 37.2 13.7 27 42-69 20-46 (357)
201 3cf2_A TER ATPase, transitiona 88.0 1.2 4.1E-05 48.3 8.5 19 54-72 239-257 (806)
202 1u94_A RECA protein, recombina 87.9 3.4 0.00012 40.2 11.1 62 25-86 16-99 (356)
203 3cmu_A Protein RECA, recombina 87.9 0.83 2.8E-05 54.3 7.6 96 46-171 1414-1518(2050)
204 2ce7_A Cell division protein F 87.7 1.1 3.8E-05 45.5 7.7 18 54-71 50-67 (476)
205 2jgn_A DBX, DDX3, ATP-dependen 87.7 1.2 4E-05 39.0 6.9 73 62-137 28-103 (185)
206 3fe2_A Probable ATP-dependent 87.6 1.4 4.8E-05 40.1 7.7 71 258-332 102-182 (242)
207 3n70_A Transport activator; si 87.5 0.42 1.4E-05 40.0 3.7 21 52-72 23-43 (145)
208 3hws_A ATP-dependent CLP prote 87.4 1.4 4.8E-05 43.0 8.1 23 52-74 50-72 (363)
209 1oyw_A RECQ helicase, ATP-depe 87.3 1.2 4E-05 46.1 7.7 75 258-332 65-145 (523)
210 2v1x_A ATP-dependent DNA helic 87.0 0.9 3.1E-05 47.7 6.7 59 258-316 84-144 (591)
211 2z43_A DNA repair and recombin 86.7 0.56 1.9E-05 45.2 4.6 58 46-103 95-167 (324)
212 1qvr_A CLPB protein; coiled co 86.6 1.9 6.7E-05 47.3 9.5 18 54-71 192-209 (854)
213 2ehv_A Hypothetical protein PH 86.5 0.97 3.3E-05 41.1 6.0 20 52-71 29-48 (251)
214 2dhr_A FTSH; AAA+ protein, hex 86.5 5.2 0.00018 40.9 11.9 19 54-72 65-83 (499)
215 3b85_A Phosphate starvation-in 86.3 0.73 2.5E-05 41.3 4.9 35 36-70 5-39 (208)
216 1q57_A DNA primase/helicase; d 85.7 6.7 0.00023 40.0 12.5 153 46-203 231-404 (503)
217 3e2i_A Thymidine kinase; Zn-bi 85.5 0.68 2.3E-05 41.6 4.1 38 52-89 27-67 (219)
218 2oxc_A Probable ATP-dependent 85.5 1.3 4.6E-05 39.9 6.3 55 257-316 91-150 (230)
219 2i1q_A DNA repair and recombin 85.1 0.99 3.4E-05 43.3 5.5 24 46-69 86-114 (322)
220 1sky_E F1-ATPase, F1-ATP synth 84.7 4.3 0.00015 41.0 10.0 25 46-70 141-168 (473)
221 2yhs_A FTSY, cell division pro 84.4 8.2 0.00028 39.2 12.0 30 55-84 295-327 (503)
222 3i32_A Heat resistant RNA depe 84.0 3.6 0.00012 39.0 8.8 60 77-138 27-86 (300)
223 2vhj_A Ntpase P4, P4; non- hyd 83.7 1 3.6E-05 43.2 4.8 18 53-70 123-140 (331)
224 2zr9_A Protein RECA, recombina 83.6 4.7 0.00016 39.1 9.7 42 45-86 47-97 (349)
225 1e9r_A Conjugal transfer prote 83.3 0.58 2E-05 47.1 3.1 41 52-92 52-95 (437)
226 1qvr_A CLPB protein; coiled co 82.9 1.4 4.9E-05 48.4 6.2 17 55-71 590-606 (854)
227 1ypw_A Transitional endoplasmi 82.8 2.1 7.1E-05 46.8 7.4 21 53-73 238-258 (806)
228 2oap_1 GSPE-2, type II secreti 82.4 1.6 5.6E-05 44.8 6.0 31 39-69 245-276 (511)
229 3cmw_A Protein RECA, recombina 82.3 5.8 0.0002 46.6 11.0 96 46-171 719-823 (1706)
230 1vec_A ATP-dependent RNA helic 82.2 3 0.0001 36.6 7.1 55 258-316 71-130 (206)
231 3tb6_A Arabinose metabolism tr 82.2 30 0.001 31.6 15.3 181 89-284 32-226 (298)
232 2gxq_A Heat resistant RNA depe 82.2 3.1 0.00011 36.4 7.2 56 257-316 71-128 (207)
233 3iuy_A Probable ATP-dependent 82.0 2.6 8.9E-05 37.8 6.7 72 257-332 93-173 (228)
234 3e70_C DPA, signal recognition 81.8 18 0.00061 34.6 12.9 48 159-210 212-260 (328)
235 2i4i_A ATP-dependent RNA helic 81.8 5.6 0.00019 39.1 9.7 60 77-138 275-334 (417)
236 2r8r_A Sensor protein; KDPD, P 81.7 13 0.00044 33.6 11.0 17 55-71 8-24 (228)
237 3bor_A Human initiation factor 81.6 4.1 0.00014 36.8 7.9 57 257-316 97-157 (237)
238 3io5_A Recombination and repai 81.5 1.6 5.5E-05 41.8 5.1 47 55-104 30-81 (333)
239 2r44_A Uncharacterized protein 81.2 1.7 5.9E-05 41.6 5.4 24 48-71 41-64 (331)
240 3ly5_A ATP-dependent RNA helic 80.6 7.4 0.00025 35.8 9.5 71 258-332 126-207 (262)
241 1ofh_A ATP-dependent HSL prote 79.9 3.6 0.00012 38.6 7.2 19 53-71 50-68 (310)
242 3hr8_A Protein RECA; alpha and 79.6 7.5 0.00026 37.8 9.4 45 45-89 47-100 (356)
243 2d7d_A Uvrabc system protein B 79.2 25 0.00086 37.2 14.1 82 77-170 444-525 (661)
244 1p9r_A General secretion pathw 78.8 1.8 6E-05 43.3 4.7 31 39-69 151-183 (418)
245 3cmu_A Protein RECA, recombina 78.6 13 0.00044 44.5 12.3 97 45-171 369-474 (2050)
246 1um8_A ATP-dependent CLP prote 78.5 6.3 0.00022 38.4 8.7 20 53-72 72-91 (376)
247 2x8a_A Nuclear valosin-contain 78.4 1 3.6E-05 42.1 2.7 54 14-71 6-62 (274)
248 3lda_A DNA repair protein RAD5 78.0 12 0.00041 36.9 10.5 26 46-71 166-196 (400)
249 3nbx_X ATPase RAVA; AAA+ ATPas 78.0 2.8 9.4E-05 43.0 5.9 28 45-72 33-60 (500)
250 3egc_A Putative ribose operon 77.9 41 0.0014 30.7 14.5 177 89-284 25-211 (291)
251 2pl3_A Probable ATP-dependent 77.6 5.5 0.00019 35.8 7.4 55 257-316 96-154 (236)
252 1hv8_A Putative ATP-dependent 77.5 15 0.00051 35.0 11.0 60 77-138 237-296 (367)
253 4b4t_M 26S protease regulatory 77.5 1.4 4.7E-05 44.2 3.4 56 13-72 176-234 (434)
254 3gk5_A Uncharacterized rhodane 77.4 1.7 6E-05 34.1 3.4 37 257-293 54-90 (108)
255 3fht_A ATP-dependent RNA helic 77.3 6.3 0.00021 38.5 8.3 60 77-138 265-324 (412)
256 3eme_A Rhodanese-like domain p 77.1 1.7 5.9E-05 33.7 3.3 37 257-293 55-91 (103)
257 1qde_A EIF4A, translation init 76.9 2.1 7.2E-05 38.2 4.3 55 257-316 81-139 (224)
258 3a8t_A Adenylate isopentenyltr 76.8 1.7 5.7E-05 42.0 3.7 18 54-71 41-58 (339)
259 3foj_A Uncharacterized protein 76.8 1.7 5.9E-05 33.5 3.2 37 257-293 55-91 (100)
260 2v9p_A Replication protein E1; 76.8 1.4 4.9E-05 41.9 3.2 42 44-86 113-159 (305)
261 1lvg_A Guanylate kinase, GMP k 76.7 1.4 4.7E-05 39.0 2.9 19 52-70 3-21 (198)
262 1kgd_A CASK, peripheral plasma 76.6 1.4 5E-05 38.0 3.0 20 52-71 4-23 (180)
263 1xti_A Probable ATP-dependent 76.5 7.4 0.00025 37.7 8.5 60 77-138 249-308 (391)
264 1s2m_A Putative ATP-dependent 76.4 6.8 0.00023 38.2 8.3 60 77-138 257-316 (400)
265 3hjh_A Transcription-repair-co 76.4 3.5 0.00012 41.9 6.2 50 52-101 13-62 (483)
266 3pey_A ATP-dependent RNA helic 76.2 7.1 0.00024 37.8 8.3 59 78-138 243-301 (395)
267 1ls1_A Signal recognition part 76.0 47 0.0016 31.0 13.7 33 53-85 98-133 (295)
268 2gza_A Type IV secretion syste 75.3 1.9 6.4E-05 42.2 3.7 22 49-70 171-192 (361)
269 4b4t_K 26S protease regulatory 74.9 1.8 6.2E-05 43.3 3.5 56 14-72 168-225 (428)
270 1tue_A Replication protein E1; 74.9 3.7 0.00013 36.6 5.1 44 24-70 28-75 (212)
271 4fcw_A Chaperone protein CLPB; 74.7 1.5 5.3E-05 41.4 2.9 17 55-71 49-65 (311)
272 2j0s_A ATP-dependent RNA helic 74.4 8 0.00027 37.9 8.2 60 77-138 275-334 (410)
273 2xxa_A Signal recognition part 74.4 45 0.0015 33.2 13.7 41 55-95 102-148 (433)
274 2bjv_A PSP operon transcriptio 74.2 2.3 7.7E-05 39.3 3.8 21 52-72 28-48 (265)
275 3iwh_A Rhodanese-like domain p 74.2 2.3 7.8E-05 33.2 3.3 36 257-292 55-90 (103)
276 3exa_A TRNA delta(2)-isopenten 74.1 2.1 7.3E-05 40.8 3.6 17 55-71 5-21 (322)
277 1q0u_A Bstdead; DEAD protein, 73.7 1.8 6.1E-05 38.6 2.9 55 258-316 72-134 (219)
278 1gvn_B Zeta; postsegregational 73.5 16 0.00053 34.2 9.6 32 55-86 35-66 (287)
279 3tau_A Guanylate kinase, GMP k 73.4 1.9 6.5E-05 38.3 3.0 20 52-71 7-26 (208)
280 2p5t_B PEZT; postsegregational 73.2 16 0.00055 33.2 9.4 18 55-72 34-51 (253)
281 2eyu_A Twitching motility prot 73.2 1.6 5.4E-05 40.6 2.4 20 51-70 23-42 (261)
282 3foz_A TRNA delta(2)-isopenten 73.1 2.2 7.6E-05 40.6 3.4 16 55-70 12-27 (316)
283 3vaa_A Shikimate kinase, SK; s 73.1 2 6.8E-05 37.8 3.0 21 52-72 24-44 (199)
284 3dbi_A Sugar-binding transcrip 72.6 63 0.0022 30.2 18.0 177 89-284 80-267 (338)
285 2pt7_A CAG-ALFA; ATPase, prote 72.5 2.2 7.5E-05 41.1 3.4 21 50-70 168-188 (330)
286 1wrb_A DJVLGB; RNA helicase, D 72.5 8.3 0.00028 35.0 7.3 55 258-316 100-158 (253)
287 1wv9_A Rhodanese homolog TT165 72.5 2.5 8.5E-05 32.1 3.0 35 259-293 54-88 (94)
288 3tr0_A Guanylate kinase, GMP k 72.0 1.9 6.5E-05 37.8 2.6 20 52-71 6-25 (205)
289 3g5j_A Putative ATP/GTP bindin 71.3 3.7 0.00013 33.2 4.1 37 259-295 90-127 (134)
290 2j37_W Signal recognition part 71.0 46 0.0016 33.8 13.0 32 55-86 103-137 (504)
291 3a00_A Guanylate kinase, GMP k 71.0 2.7 9.1E-05 36.5 3.3 18 54-71 2-19 (186)
292 1z6g_A Guanylate kinase; struc 70.9 2.7 9.3E-05 37.6 3.4 21 50-70 20-40 (218)
293 1ex7_A Guanylate kinase; subst 70.8 2.2 7.6E-05 37.3 2.7 17 54-70 2-18 (186)
294 2jtq_A Phage shock protein E; 70.3 7.1 0.00024 28.7 5.2 36 257-293 40-76 (85)
295 3ney_A 55 kDa erythrocyte memb 69.7 2.7 9.2E-05 37.2 3.0 19 52-70 18-36 (197)
296 1u0j_A DNA replication protein 69.6 4.1 0.00014 37.8 4.3 45 23-71 72-122 (267)
297 3trf_A Shikimate kinase, SK; a 69.6 2.6 9E-05 36.2 2.9 20 53-72 5-24 (185)
298 2qmh_A HPR kinase/phosphorylas 69.5 1.8 6.2E-05 38.4 1.8 17 53-69 34-50 (205)
299 2ffh_A Protein (FFH); SRP54, s 69.3 53 0.0018 32.5 12.7 48 157-208 179-227 (425)
300 1tf7_A KAIC; homohexamer, hexa 69.2 25 0.00086 35.9 10.7 36 52-87 280-318 (525)
301 2db3_A ATP-dependent RNA helic 69.1 12 0.0004 37.3 8.1 59 78-138 300-358 (434)
302 1c4o_A DNA nucleotide excision 68.9 17 0.00058 38.5 9.6 81 77-169 438-518 (664)
303 2j41_A Guanylate kinase; GMP, 68.8 2.5 8.5E-05 37.1 2.6 21 51-71 4-24 (207)
304 2ze6_A Isopentenyl transferase 68.8 2.6 9E-05 38.8 2.9 15 56-70 4-18 (253)
305 4a2p_A RIG-I, retinoic acid in 68.7 5.8 0.0002 40.6 5.8 73 258-334 55-138 (556)
306 3lw7_A Adenylate kinase relate 68.6 2.3 7.7E-05 36.0 2.2 17 56-72 4-20 (179)
307 3uk6_A RUVB-like 2; hexameric 68.5 2.5 8.5E-05 41.0 2.8 18 54-71 71-88 (368)
308 1kag_A SKI, shikimate kinase I 68.5 3.4 0.00011 35.1 3.4 20 53-72 4-23 (173)
309 1znw_A Guanylate kinase, GMP k 68.4 2.9 0.0001 37.0 3.0 23 49-71 16-38 (207)
310 2qor_A Guanylate kinase; phosp 68.3 2.4 8.1E-05 37.4 2.4 21 50-70 9-29 (204)
311 3hix_A ALR3790 protein; rhodan 68.2 3.6 0.00012 32.0 3.2 37 257-293 51-88 (106)
312 3nwn_A Kinesin-like protein KI 68.2 3.6 0.00012 40.1 3.8 25 46-70 96-122 (359)
313 3tbk_A RIG-I helicase domain; 68.2 4.5 0.00015 41.4 4.8 72 258-333 52-134 (555)
314 3crm_A TRNA delta(2)-isopenten 68.1 3.3 0.00011 39.7 3.4 17 55-71 7-23 (323)
315 2fsx_A RV0390, COG0607: rhodan 68.1 5.7 0.0002 33.0 4.6 37 257-293 79-116 (148)
316 4a2q_A RIG-I, retinoic acid in 68.1 7.2 0.00025 42.4 6.6 72 258-333 296-378 (797)
317 3cmw_A Protein RECA, recombina 68.0 7.7 0.00026 45.6 7.0 97 46-172 1418-1523(1706)
318 2r62_A Cell division protease 67.5 2 6.9E-05 39.6 1.8 19 53-71 44-62 (268)
319 2yjt_D ATP-dependent RNA helic 70.8 1.1 3.8E-05 38.4 0.0 58 78-137 30-87 (170)
320 1zp6_A Hypothetical protein AT 67.3 2.5 8.6E-05 36.6 2.3 21 52-72 8-28 (191)
321 4akg_A Glutathione S-transfera 67.2 6.6 0.00023 48.4 6.5 50 23-74 891-944 (2695)
322 2l82_A Designed protein OR32; 67.2 21 0.00073 27.5 7.1 50 261-310 5-54 (162)
323 3vkg_A Dynein heavy chain, cyt 67.1 6.8 0.00023 48.9 6.6 62 23-86 874-945 (3245)
324 1bg2_A Kinesin; motor protein, 67.1 4.1 0.00014 39.1 3.9 25 46-70 69-95 (325)
325 3flh_A Uncharacterized protein 67.0 2.9 9.8E-05 33.7 2.4 37 257-293 70-108 (124)
326 4ag6_A VIRB4 ATPase, type IV s 66.6 4.8 0.00016 39.6 4.5 38 52-89 34-74 (392)
327 3qk7_A Transcriptional regulat 66.5 78 0.0027 28.9 15.8 179 89-284 27-212 (294)
328 3iij_A Coilin-interacting nucl 66.4 3.9 0.00013 35.0 3.4 20 52-71 10-29 (180)
329 3nhv_A BH2092 protein; alpha-b 66.3 3.9 0.00013 33.9 3.2 36 258-293 72-109 (144)
330 1ojl_A Transcriptional regulat 65.9 3.2 0.00011 39.4 2.9 21 52-72 24-44 (304)
331 1qhx_A CPT, protein (chloramph 65.8 3.5 0.00012 35.1 2.9 20 53-72 3-22 (178)
332 3o74_A Fructose transport syst 65.8 74 0.0025 28.4 19.9 179 89-283 19-204 (272)
333 1qxn_A SUD, sulfide dehydrogen 65.7 4.4 0.00015 33.3 3.4 37 257-293 81-118 (137)
334 2k0z_A Uncharacterized protein 65.5 6 0.0002 31.0 4.0 38 256-293 54-91 (110)
335 1hqc_A RUVB; extended AAA-ATPa 65.3 5.2 0.00018 37.9 4.3 18 54-71 39-56 (324)
336 1s96_A Guanylate kinase, GMP k 65.2 3.6 0.00012 37.0 3.0 21 50-70 13-33 (219)
337 3dc4_A Kinesin-like protein NO 65.2 4.6 0.00016 39.1 3.8 25 46-70 86-112 (344)
338 3jvv_A Twitching mobility prot 65.1 3.3 0.00011 40.3 2.9 18 53-70 123-140 (356)
339 3kb2_A SPBC2 prophage-derived 65.1 3.7 0.00012 34.7 2.9 17 55-71 3-19 (173)
340 2bdt_A BH3686; alpha-beta prot 65.1 5.4 0.00018 34.4 4.1 18 55-72 4-21 (189)
341 2vvg_A Kinesin-2; motor protei 65.0 4.8 0.00016 39.0 3.9 24 47-70 82-107 (350)
342 2y65_A Kinesin, kinesin heavy 65.0 4.8 0.00016 39.3 3.9 24 47-70 77-102 (365)
343 3l49_A ABC sugar (ribose) tran 64.9 46 0.0016 30.3 10.9 183 89-283 22-215 (291)
344 3d3q_A TRNA delta(2)-isopenten 64.9 4.1 0.00014 39.3 3.4 16 55-70 9-24 (340)
345 3b6u_A Kinesin-like protein KI 64.9 4.6 0.00016 39.5 3.8 25 46-70 93-119 (372)
346 1g41_A Heat shock protein HSLU 64.8 6 0.00021 39.7 4.8 20 53-72 50-69 (444)
347 3i5x_A ATP-dependent RNA helic 64.7 24 0.00082 36.2 9.6 60 77-138 338-400 (563)
348 3nwj_A ATSK2; P loop, shikimat 64.5 4.7 0.00016 37.0 3.7 21 52-72 47-67 (250)
349 4gp7_A Metallophosphoesterase; 64.5 2.6 8.9E-05 36.1 1.8 21 52-72 8-28 (171)
350 2h58_A Kinesin-like protein KI 64.5 5.3 0.00018 38.4 4.1 26 45-70 71-98 (330)
351 1v8k_A Kinesin-like protein KI 64.4 4.7 0.00016 40.0 3.8 26 46-71 146-173 (410)
352 3sqw_A ATP-dependent RNA helic 64.3 25 0.00085 36.4 9.7 60 77-138 287-349 (579)
353 4a14_A Kinesin, kinesin-like p 64.3 5 0.00017 38.8 3.9 24 47-70 76-101 (344)
354 2ewv_A Twitching motility prot 64.2 3.1 0.0001 40.8 2.4 19 52-70 135-153 (372)
355 1t5c_A CENP-E protein, centrom 64.1 5.1 0.00018 38.8 4.0 25 46-70 69-95 (349)
356 3gbj_A KIF13B protein; kinesin 64.0 5.1 0.00018 38.9 4.0 25 46-70 84-110 (354)
357 1goj_A Kinesin, kinesin heavy 63.8 4.7 0.00016 39.2 3.6 24 47-70 73-98 (355)
358 1gku_B Reverse gyrase, TOP-RG; 63.7 7.8 0.00027 43.6 5.9 76 257-334 98-183 (1054)
359 4etp_A Kinesin-like protein KA 63.7 5.6 0.00019 39.4 4.3 26 46-71 132-159 (403)
360 2nr8_A Kinesin-like protein KI 63.6 5.3 0.00018 38.8 4.0 25 46-70 95-121 (358)
361 1y63_A LMAJ004144AAA protein; 63.6 4.1 0.00014 35.2 3.0 21 52-72 9-29 (184)
362 3fmo_B ATP-dependent RNA helic 63.3 5.3 0.00018 37.7 3.9 70 258-334 162-243 (300)
363 1gmx_A GLPE protein; transfera 63.3 4.4 0.00015 31.6 2.8 38 257-294 57-95 (108)
364 2fsf_A Preprotein translocase 63.2 21 0.00073 38.6 8.8 71 256-332 113-200 (853)
365 2zfi_A Kinesin-like protein KI 63.2 5.7 0.00019 38.8 4.1 25 46-70 81-107 (366)
366 1tf5_A Preprotein translocase 63.0 24 0.00082 38.2 9.2 73 254-332 120-209 (844)
367 3lre_A Kinesin-like protein KI 63.0 4.9 0.00017 39.1 3.6 24 47-70 98-123 (355)
368 3dkp_A Probable ATP-dependent 63.0 2.4 8.1E-05 38.5 1.3 72 258-332 98-181 (245)
369 1tq1_A AT5G66040, senescence-a 62.7 4.6 0.00016 32.7 2.9 37 257-293 81-118 (129)
370 1ly1_A Polynucleotide kinase; 62.6 4.3 0.00015 34.5 2.9 16 56-71 5-20 (181)
371 4eun_A Thermoresistant glucoki 62.4 4.4 0.00015 35.5 3.0 20 52-71 28-47 (200)
372 2c9o_A RUVB-like 1; hexameric 62.4 3.9 0.00013 41.3 2.9 18 54-71 64-81 (456)
373 2wbe_C Bipolar kinesin KRP-130 62.4 4.9 0.00017 39.3 3.5 24 47-70 93-118 (373)
374 1kht_A Adenylate kinase; phosp 61.9 4.5 0.00015 34.8 2.9 19 53-71 3-21 (192)
375 3eiq_A Eukaryotic initiation f 61.7 8.8 0.0003 37.5 5.4 59 78-138 280-338 (414)
376 1x88_A Kinesin-like protein KI 61.7 5.3 0.00018 38.9 3.6 25 46-70 80-106 (359)
377 3cm0_A Adenylate kinase; ATP-b 61.4 3.3 0.00011 35.6 2.0 21 52-72 3-23 (186)
378 1in4_A RUVB, holliday junction 60.9 4.8 0.00016 38.6 3.2 19 54-72 52-70 (334)
379 3u06_A Protein claret segregat 60.9 5.8 0.0002 39.4 3.8 25 46-70 130-156 (412)
380 2heh_A KIF2C protein; kinesin, 60.7 5.9 0.0002 38.9 3.7 25 46-70 126-152 (387)
381 3d1p_A Putative thiosulfate su 60.6 5.8 0.0002 32.5 3.2 37 257-293 90-127 (139)
382 1c9k_A COBU, adenosylcobinamid 60.5 7 0.00024 33.9 3.8 31 56-87 2-32 (180)
383 3h75_A Periplasmic sugar-bindi 60.5 1.1E+02 0.0038 28.6 19.2 181 90-284 22-230 (350)
384 1iy2_A ATP-dependent metallopr 60.4 6.7 0.00023 36.3 4.0 18 54-71 74-91 (278)
385 1g8p_A Magnesium-chelatase 38 60.4 6.1 0.00021 37.8 3.8 19 53-71 45-63 (350)
386 1knq_A Gluconate kinase; ALFA/ 60.4 4.3 0.00015 34.5 2.4 19 53-71 8-26 (175)
387 2owm_A Nckin3-434, related to 60.3 6 0.0002 39.7 3.8 24 47-70 129-154 (443)
388 3eph_A TRNA isopentenyltransfe 60.1 4.4 0.00015 40.0 2.7 15 56-70 5-19 (409)
389 3lnc_A Guanylate kinase, GMP k 60.0 3.6 0.00012 37.0 1.9 19 52-70 26-44 (231)
390 3k1j_A LON protease, ATP-depen 59.7 7.6 0.00026 40.7 4.7 26 47-72 54-79 (604)
391 1f2t_A RAD50 ABC-ATPase; DNA d 59.3 4.4 0.00015 33.8 2.3 15 55-69 25-39 (149)
392 3cob_A Kinesin heavy chain-lik 59.3 5.5 0.00019 38.9 3.2 25 46-70 71-97 (369)
393 3tqc_A Pantothenate kinase; bi 59.2 11 0.00038 35.9 5.4 15 56-70 95-109 (321)
394 3t0q_A AGR253WP; kinesin, alph 59.2 5.1 0.00017 38.9 2.9 26 46-71 77-104 (349)
395 2hhg_A Hypothetical protein RP 59.1 5 0.00017 32.8 2.6 37 257-293 85-122 (139)
396 3uie_A Adenylyl-sulfate kinase 59.0 4.7 0.00016 35.3 2.5 20 52-71 24-43 (200)
397 3t61_A Gluconokinase; PSI-biol 58.9 5.4 0.00018 34.9 2.9 18 54-71 19-36 (202)
398 1wp9_A ATP-dependent RNA helic 58.8 22 0.00075 35.1 7.9 59 77-137 360-426 (494)
399 3jy6_A Transcriptional regulat 58.7 1E+02 0.0035 27.6 20.2 177 89-284 24-206 (276)
400 1f9v_A Kinesin-like protein KA 58.7 5.1 0.00017 38.8 2.9 25 47-71 77-103 (347)
401 1fuu_A Yeast initiation factor 58.2 16 0.00056 35.1 6.6 73 257-334 88-170 (394)
402 1ry6_A Internal kinesin; kines 57.9 6.9 0.00024 38.1 3.6 23 49-71 78-103 (360)
403 3qf7_A RAD50; ABC-ATPase, ATPa 57.6 4.4 0.00015 39.5 2.3 16 55-70 25-40 (365)
404 3bfn_A Kinesin-like protein KI 57.3 5.8 0.0002 39.0 3.0 30 41-70 77-116 (388)
405 1cke_A CK, MSSA, protein (cyti 57.2 5.8 0.0002 35.3 2.9 19 54-72 6-24 (227)
406 3kta_A Chromosome segregation 56.9 4.7 0.00016 34.5 2.1 17 55-71 28-44 (182)
407 1ye8_A Protein THEP1, hypothet 56.9 6.2 0.00021 34.0 2.9 16 55-70 2-17 (178)
408 3k4h_A Putative transcriptiona 56.8 1.1E+02 0.0038 27.5 18.4 180 89-284 30-217 (292)
409 1via_A Shikimate kinase; struc 56.7 6.8 0.00023 33.3 3.1 18 55-72 6-23 (175)
410 1vee_A Proline-rich protein fa 56.4 8.1 0.00028 31.4 3.4 37 257-293 73-110 (134)
411 1nkt_A Preprotein translocase 56.4 30 0.001 37.7 8.5 73 254-332 148-237 (922)
412 3c8u_A Fructokinase; YP_612366 56.3 4.9 0.00017 35.5 2.1 18 53-70 22-39 (208)
413 1nij_A Hypothetical protein YJ 56.1 8 0.00027 36.8 3.8 31 56-86 7-38 (318)
414 2qt1_A Nicotinamide riboside k 55.8 9.9 0.00034 33.3 4.1 20 53-72 21-40 (207)
415 2i3b_A HCR-ntpase, human cance 55.7 7.7 0.00026 33.8 3.3 42 157-203 104-145 (189)
416 3fb4_A Adenylate kinase; psych 55.7 6.5 0.00022 34.7 2.9 17 56-72 3-19 (216)
417 3ilm_A ALR3790 protein; rhodan 55.4 7.8 0.00027 31.9 3.1 37 257-293 55-92 (141)
418 2c95_A Adenylate kinase 1; tra 55.1 6.6 0.00023 33.9 2.8 20 52-71 8-27 (196)
419 2rep_A Kinesin-like protein KI 54.9 6.2 0.00021 38.6 2.8 23 48-70 109-133 (376)
420 1tev_A UMP-CMP kinase; ploop, 54.9 6.8 0.00023 33.6 2.9 18 54-71 4-21 (196)
421 3asz_A Uridine kinase; cytidin 54.7 5.8 0.0002 34.9 2.4 18 53-70 6-23 (211)
422 3zvl_A Bifunctional polynucleo 54.7 42 0.0014 33.1 9.0 17 55-71 260-276 (416)
423 1zuh_A Shikimate kinase; alpha 54.6 6.9 0.00024 32.9 2.8 19 54-72 8-26 (168)
424 2rhm_A Putative kinase; P-loop 54.5 6.8 0.00023 33.7 2.8 18 54-71 6-23 (193)
425 3dl0_A Adenylate kinase; phosp 54.2 7.1 0.00024 34.5 2.9 17 56-72 3-19 (216)
426 1zd8_A GTP:AMP phosphotransfer 54.2 6.8 0.00023 35.0 2.8 19 53-71 7-25 (227)
427 2bwj_A Adenylate kinase 5; pho 54.0 9.1 0.00031 33.0 3.5 22 50-71 9-30 (199)
428 1e6c_A Shikimate kinase; phosp 54.0 7.4 0.00025 32.8 2.9 19 54-72 3-21 (173)
429 3b6e_A Interferon-induced heli 53.9 8.6 0.00029 33.6 3.4 56 258-317 82-141 (216)
430 3f9v_A Minichromosome maintena 53.8 5.2 0.00018 41.9 2.2 17 55-71 329-345 (595)
431 2iyv_A Shikimate kinase, SK; t 53.6 7.5 0.00026 33.2 2.9 19 54-72 3-21 (184)
432 3bs4_A Uncharacterized protein 53.4 19 0.00064 33.2 5.6 59 46-105 9-75 (260)
433 3pxg_A Negative regulator of g 53.2 8.4 0.00029 38.9 3.6 18 54-71 202-219 (468)
434 4a74_A DNA repair and recombin 53.2 6.1 0.00021 35.1 2.3 19 53-71 25-43 (231)
435 1nks_A Adenylate kinase; therm 53.0 7.3 0.00025 33.4 2.7 16 56-71 4-19 (194)
436 3dr5_A Putative O-methyltransf 53.0 1.2E+02 0.004 26.6 17.5 127 34-169 32-166 (221)
437 4akg_A Glutathione S-transfera 52.9 10 0.00035 46.8 4.7 21 50-70 1264-1284(2695)
438 3m6a_A ATP-dependent protease 52.8 9.1 0.00031 39.5 3.8 20 53-72 108-127 (543)
439 3tif_A Uncharacterized ABC tra 52.8 7.2 0.00025 35.3 2.7 20 52-71 30-49 (235)
440 2ipc_A Preprotein translocase 52.6 29 0.00098 38.0 7.6 59 253-317 115-177 (997)
441 3a4m_A L-seryl-tRNA(SEC) kinas 52.6 12 0.0004 34.3 4.2 18 54-71 5-22 (260)
442 1qf9_A UMP/CMP kinase, protein 52.4 7.7 0.00026 33.2 2.8 17 55-71 8-24 (194)
443 1jjv_A Dephospho-COA kinase; P 52.4 7.9 0.00027 33.8 2.9 17 56-72 5-21 (206)
444 2f1r_A Molybdopterin-guanine d 52.2 6.1 0.00021 33.9 2.0 16 55-70 4-19 (171)
445 3nh6_A ATP-binding cassette SU 52.1 6.8 0.00023 37.2 2.5 20 52-71 79-98 (306)
446 3auy_A DNA double-strand break 52.1 5.9 0.0002 38.7 2.1 16 55-70 27-42 (371)
447 3dmq_A RNA polymerase-associat 52.1 33 0.0011 38.1 8.4 61 77-137 502-563 (968)
448 1urh_A 3-mercaptopyruvate sulf 52.0 16 0.00056 33.7 5.2 38 257-294 229-267 (280)
449 2oca_A DAR protein, ATP-depend 52.0 84 0.0029 31.5 11.0 98 78-192 347-444 (510)
450 1zu4_A FTSY; GTPase, signal re 51.2 1.6E+02 0.0055 27.6 14.9 30 55-84 107-139 (320)
451 4e22_A Cytidylate kinase; P-lo 51.1 8.4 0.00029 35.2 2.9 21 52-72 26-46 (252)
452 3sr0_A Adenylate kinase; phosp 51.1 8.7 0.0003 34.0 2.9 16 56-71 3-18 (206)
453 2ius_A DNA translocase FTSK; n 51.0 8.5 0.00029 39.4 3.1 19 52-70 166-184 (512)
454 2if2_A Dephospho-COA kinase; a 50.9 8.2 0.00028 33.6 2.7 18 55-72 3-20 (204)
455 2v6i_A RNA helicase; membrane, 50.9 21 0.00071 35.5 6.0 55 78-138 171-225 (431)
456 2cdn_A Adenylate kinase; phosp 50.4 8.9 0.0003 33.4 2.9 18 54-71 21-38 (201)
457 2ykg_A Probable ATP-dependent 50.4 16 0.00054 38.8 5.3 72 259-334 62-144 (696)
458 3umf_A Adenylate kinase; rossm 50.4 8.9 0.0003 34.3 2.8 19 53-71 29-47 (217)
459 1zak_A Adenylate kinase; ATP:A 50.3 9.8 0.00034 33.7 3.2 20 53-72 5-24 (222)
460 1j8m_F SRP54, signal recogniti 50.1 83 0.0028 29.3 9.8 31 55-85 100-133 (297)
461 3huu_A Transcription regulator 49.9 1.5E+02 0.0052 27.0 17.6 173 89-284 44-227 (305)
462 2bbw_A Adenylate kinase 4, AK4 49.9 8.9 0.0003 34.7 2.9 19 53-71 27-45 (246)
463 3tg1_B Dual specificity protei 49.8 12 0.00041 31.4 3.5 35 258-292 93-136 (158)
464 3kke_A LACI family transcripti 49.7 1.5E+02 0.0052 26.9 16.8 178 88-284 31-222 (303)
465 2jaq_A Deoxyguanosine kinase; 49.4 9.3 0.00032 33.1 2.9 16 56-71 3-18 (205)
466 1htw_A HI0065; nucleotide-bind 49.4 13 0.00044 31.3 3.6 19 52-70 32-50 (158)
467 2pt5_A Shikimate kinase, SK; a 49.4 9.7 0.00033 31.9 2.8 16 56-71 3-18 (168)
468 2cy8_A D-phgat, D-phenylglycin 49.1 1.4E+02 0.0049 29.2 12.1 39 130-169 201-245 (453)
469 2cbz_A Multidrug resistance-as 49.1 8.9 0.00031 34.8 2.7 19 52-70 30-48 (237)
470 1sgw_A Putative ABC transporte 49.1 10 0.00035 33.8 3.1 20 52-71 34-53 (214)
471 1uf9_A TT1252 protein; P-loop, 48.8 9.3 0.00032 33.1 2.7 18 55-72 10-27 (203)
472 2plr_A DTMP kinase, probable t 48.7 7.5 0.00026 33.9 2.1 18 53-70 4-21 (213)
473 3m9w_A D-xylose-binding peripl 48.7 1.6E+02 0.0055 26.9 17.3 183 88-284 18-213 (313)
474 1aky_A Adenylate kinase; ATP:A 48.7 10 0.00035 33.6 3.0 19 53-71 4-22 (220)
475 2v54_A DTMP kinase, thymidylat 48.7 10 0.00035 32.9 3.0 20 52-71 3-22 (204)
476 2px0_A Flagellar biosynthesis 48.6 9.1 0.00031 36.1 2.8 19 53-71 105-123 (296)
477 2pez_A Bifunctional 3'-phospho 48.6 8.8 0.0003 32.7 2.5 18 53-70 5-22 (179)
478 1xjc_A MOBB protein homolog; s 48.5 23 0.00079 30.2 5.1 15 55-69 6-20 (169)
479 1m7g_A Adenylylsulfate kinase; 48.5 9.9 0.00034 33.5 2.9 30 41-71 14-43 (211)
480 1svm_A Large T antigen; AAA+ f 48.4 10 0.00035 37.1 3.2 20 52-71 168-187 (377)
481 1ukz_A Uridylate kinase; trans 48.4 10 0.00034 33.0 2.9 16 55-70 17-32 (203)
482 3miz_A Putative transcriptiona 48.3 1.6E+02 0.0054 26.7 13.0 178 89-284 31-222 (301)
483 3qks_A DNA double-strand break 48.2 8.2 0.00028 34.0 2.3 16 55-70 25-40 (203)
484 1w4r_A Thymidine kinase; type 48.1 14 0.00046 32.5 3.6 35 52-87 19-57 (195)
485 1rj9_A FTSY, signal recognitio 48.0 9.9 0.00034 36.0 2.9 33 53-85 102-137 (304)
486 2z0m_A 337AA long hypothetical 48.0 29 0.001 32.4 6.4 72 258-334 56-137 (337)
487 3uug_A Multiple sugar-binding 47.8 1.7E+02 0.0058 26.9 12.6 188 89-284 20-229 (330)
488 1yks_A Genome polyprotein [con 47.6 12 0.00043 37.3 3.8 56 78-139 177-232 (440)
489 4gl2_A Interferon-induced heli 47.4 17 0.00058 38.5 5.0 59 78-138 400-472 (699)
490 3gfo_A Cobalt import ATP-bindi 47.4 9.6 0.00033 35.5 2.7 20 52-71 33-52 (275)
491 1e4v_A Adenylate kinase; trans 47.1 10 0.00035 33.4 2.8 16 56-71 3-18 (214)
492 2ff7_A Alpha-hemolysin translo 46.8 10 0.00035 34.6 2.8 20 52-71 34-53 (247)
493 3mwy_W Chromo domain-containin 46.8 1.6E+02 0.0054 31.7 12.7 130 77-221 571-704 (800)
494 3b9q_A Chloroplast SRP recepto 46.7 9.2 0.00031 36.2 2.5 32 54-85 101-135 (302)
495 4g1u_C Hemin import ATP-bindin 46.7 10 0.00035 35.1 2.7 20 52-71 36-55 (266)
496 3tlx_A Adenylate kinase 2; str 46.5 11 0.00037 34.2 2.9 18 54-71 30-47 (243)
497 2yvu_A Probable adenylyl-sulfa 46.2 10 0.00034 32.6 2.5 19 53-71 13-31 (186)
498 2vli_A Antibiotic resistance p 46.2 9 0.00031 32.6 2.2 20 53-72 5-24 (183)
499 3pxi_A Negative regulator of g 46.2 14 0.00047 39.9 4.0 18 54-71 202-219 (758)
500 4a2w_A RIG-I, retinoic acid in 46.1 11 0.00037 41.8 3.3 73 258-334 296-379 (936)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.3e-76 Score=626.00 Aligned_cols=407 Identities=39% Similarity=0.715 Sum_probs=369.3
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHH
Q 010884 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 18 ~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~ 97 (498)
..+++.+.+.+.|++.|||.+|||+|.++|++++.|+|+++.||||+|||+||++|++...+.+|||+|+++|+.||++.
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccCCC
Q 010884 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (498)
Q Consensus 98 l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (498)
++++|+.+..++++.........+..+.......+++|+|||.+.++ .++..+........+++|||||||++++|||+
T Consensus 104 l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~d 183 (591)
T 2v1x_A 104 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHD 183 (591)
T ss_dssp HHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTT
T ss_pred HHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccc
Confidence 99999999999999998888777777755555699999999998764 56666766666778999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecc-hhhHHHHHHHHHHh
Q 010884 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKA 255 (498)
Q Consensus 177 fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~-~~~~~~~l~~~l~~ 255 (498)
||+.|..+..++..+|+.|+++||||+++.+..++...+++..+..+..+++++|+.|.+..... ...++..|.++++.
T Consensus 184 fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~ 263 (591)
T 2v1x_A 184 FRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 263 (591)
T ss_dssp CCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887643 34567778888864
Q ss_pred -cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeC
Q 010884 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (498)
Q Consensus 256 -~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~ 334 (498)
..+.++||||+|++.++.+++.|.+.|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++||||+
T Consensus 264 ~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 264 RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESS
T ss_pred hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeC
Confidence 3677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHHhh-ccchhH
Q 010884 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-GSGCRR 413 (498)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~-~~~Crr 413 (498)
+|.|++.|+||+|||||+|++|.|++||++.|...++.++... ......+..|+.||+ ...|||
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~Crr 408 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNISKCRR 408 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCSSSCHH
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhcccccHH
Confidence 9999999999999999999999999999999999888776432 123456889999999 579999
Q ss_pred HHHHhhhCCCCCcccCCCCCCCCCCh
Q 010884 414 KKILESFGEQIPVSLCKNSCDACKHP 439 (498)
Q Consensus 414 ~~~~~~f~~~~~~~~c~~~Cd~c~~~ 439 (498)
+.+++|||+...+..|+.+||+|..+
T Consensus 409 ~~ll~~f~e~~~~~~c~~~Cd~C~~~ 434 (591)
T 2v1x_A 409 VLMAQHFDEVWNSEACNKMCDNCCKD 434 (591)
T ss_dssp HHHHHHHTCCC---CCCSCBHHHHCC
T ss_pred HHHHHHcCCCCCccccCCCCCCCCCC
Confidence 99999999987667898889999876
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.6e-75 Score=611.12 Aligned_cols=405 Identities=41% Similarity=0.732 Sum_probs=369.2
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~ 94 (498)
..|+.+.+.+.+.+.|++.|||.+|||+|.++|++++.|+|+++.||||+|||+||++|++...+.+|||+|+++|++||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccC
Q 010884 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (498)
Q Consensus 95 ~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (498)
++.++++|+.+..+++.............+..+. .+++|+|||.+.++.+...+. ...+++|||||||++++||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l~----~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLA----HWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHHT----TSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHHh----hCCCCEEEEeCccccCcCC
Confidence 9999999999999999988887777777776664 899999999998776655443 3569999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHH
Q 010884 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (498)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~ 254 (498)
++||+.|..+..++..+|+.|+++||||+++.+..++...+++.++.++..++.++|+.+.+.... .+...+.++++
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888653 56777888888
Q ss_pred hcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeC
Q 010884 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (498)
Q Consensus 255 ~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~ 334 (498)
...+.++||||+|++.++.+++.|.+.|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++|||++
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 87778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHHHHHHHHHHHHhhccchhHH
Q 010884 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414 (498)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~Crr~ 414 (498)
+|.|++.|+||+|||||+|++|.|+++|++.|...++.++..... .+........+++|+.||++..|||+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~m~~~~~~~~crr~ 383 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQ---------GQLQDIERHKLNAMGAFAEAQTCRRL 383 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCC---------SHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHHhccccHhh
Confidence 999999999999999999999999999999999999888876211 11223455678999999999999999
Q ss_pred HHHhhhCCCCCcccCCCCCCCCCCh
Q 010884 415 KILESFGEQIPVSLCKNSCDACKHP 439 (498)
Q Consensus 415 ~~~~~f~~~~~~~~c~~~Cd~c~~~ 439 (498)
++++|||+..+ ..|+ .||+|..+
T Consensus 384 ~l~~~f~e~~~-~~c~-~cd~c~~~ 406 (523)
T 1oyw_A 384 VLLNYFGEGRQ-EPCG-NCDICLDP 406 (523)
T ss_dssp HHHHHTTCCCC-SCCS-CBHHHHSC
T ss_pred hhHhhcCCCCC-CCCC-CCCCCCCC
Confidence 99999999864 5787 59999874
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-52 Score=431.32 Aligned_cols=339 Identities=19% Similarity=0.277 Sum_probs=273.5
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----------CCeEEE
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLV 83 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-----------~~~~lv 83 (498)
..|.++.+.+.+.+.|++ +||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. .+.+||
T Consensus 56 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 356667888999999987 79999999999999999999999999999999999999998742 458999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCC
Q 010884 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGL 158 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~ 158 (498)
++||++|+.|+.+.+++++ +.+..+.++........ .+.. ..+++++||+.+.. .+. .......
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ivv~Tp~~l~~-----~l~~~~~~l~~ 203 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITR---GCHVVIATPGRLLD-----FVDRTFITFED 203 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTT---CCSEEEECHHHHHH-----HHHTTSCCCTT
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hhhc---CCCEEEEChHHHHH-----HHHhCCccccc
Confidence 9999999999999999854 55666666665543322 2222 36787777765522 111 1223566
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCC---CCCceEEE
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYE 235 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ni~~~ 235 (498)
++++|+||||++.+|| |++.+..+.......++.+++++|||+++.+...... .+.++..+.... ...++...
T Consensus 204 ~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~i~~~ 279 (434)
T 2db3_A 204 TRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE--FLKNYVFVAIGIVGGACSDVKQT 279 (434)
T ss_dssp CCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEEEESSTTCCCTTEEEE
T ss_pred CCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH--hccCCEEEEeccccccccccceE
Confidence 8999999999999998 8888877755444457899999999999988764443 344555544322 23445444
Q ss_pred EEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEe
Q 010884 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (498)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT 315 (498)
+.... ...+...|.+++.....+ +||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 280 ~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 280 IYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 44333 246778888888876554 9999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccc-hHHHHH
Q 010884 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRME 371 (498)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~-d~~~~~ 371 (498)
+++++|||+|+|++||+|++|.+++.|+||+||+||.|+.|.+++|+++. |...++
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~ 414 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAA 414 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHH
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHH
Confidence 99999999999999999999999999999999999999999999999954 444333
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.2e-51 Score=441.71 Aligned_cols=347 Identities=18% Similarity=0.239 Sum_probs=268.3
Q ss_pred ChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHhHhcC----------CCeEEEeCcHH
Q 010884 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (498)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~--~g~dvlv~apTG~GKTl~~~l~~l~~----------~~~~lvl~P~~ 88 (498)
.+.+.+.+.|+. +||..|||+|.++|+.++ .++++++.||||+|||++|++|++.. ..++|||+|++
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 367889999986 899999999999999999 77899999999999999999998742 24899999999
Q ss_pred HHHHHHHHHHHHc-----C---CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCcc
Q 010884 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (498)
Q Consensus 89 ~L~~q~~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~ 160 (498)
+|+.|+.+.++++ + +....+.++...... ...+... ..+|+++||+.+... +... .......++
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~--~~~IlV~Tp~~l~~~--l~~~-~~~~~~~~~ 177 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL--RPNIVIATPGRLIDV--LEKY-SNKFFRFVD 177 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH--CCSEEEECHHHHHHH--HHHH-HHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH---HHHHhcC--CCCEEEECHHHHHHH--HHhc-cccccccCC
Confidence 9999999999874 2 334444554443322 2222222 267888888866321 1111 122356689
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCC-----CCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-C----CCCC
Q 010884 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-S----FNRP 230 (498)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-----~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~----~~r~ 230 (498)
+|||||||++++|| |++.+..+........ ++|+++||||+++.+...+...+.......+.. . ....
T Consensus 178 ~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 178 YKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp EEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred EEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc
Confidence 99999999999999 9999988877665432 789999999999987664444333222222211 1 1223
Q ss_pred ceEEEEEeecchhh----HHHHHHHHHHh-cCCccEEEEeCccchHHHHHHHHHhC---CCceEeecCCCCHHHHHHHHH
Q 010884 231 NLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLD 302 (498)
Q Consensus 231 ni~~~v~~~~~~~~----~~~~l~~~l~~-~~~~~~IVf~~t~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~ 302 (498)
.+...+........ .+..+...+.. .++.++||||+|++.++.+++.|.+. |+.+..+||+|++++|..+++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 256 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred ccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 34433333332222 23334444443 45678999999999999999999986 899999999999999999999
Q ss_pred HHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcc
Q 010884 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 303 ~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
.|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+|||||+|+.|.|++|+++.|...++.+.+...
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877543
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.6e-51 Score=438.08 Aligned_cols=345 Identities=17% Similarity=0.226 Sum_probs=266.1
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHhHhcC----------CCeEEEeCcHHH
Q 010884 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLIA 89 (498)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~--~g~dvlv~apTG~GKTl~~~l~~l~~----------~~~~lvl~P~~~ 89 (498)
+.+.+.+.|++ +||..|+|+|.++|+.++ .++++++.||||+|||++|++|++.. ..++|||+|+++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 66788889976 799999999999999999 67899999999999999999998742 248999999999
Q ss_pred HHHHHHHHHHHc--------CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccE
Q 010884 90 LMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (498)
Q Consensus 90 L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~ 161 (498)
|+.|+.+.++++ +.....+.++...... ...+... ..+|+++||+.+.... ... .......+++
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~--~~~Iiv~Tp~~l~~~l--~~~-~~~~~~~~~~ 229 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL--RPNIVIATPGRLIDVL--EKY-SNKFFRFVDY 229 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH--CCSEEEECHHHHHHHH--HHH-HHHHCTTCCE
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcC--CCCEEEECcHHHHHHH--Hhc-cccccccceE
Confidence 999999999873 2334555555444332 2222222 2678888888663211 111 1223556899
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhC-----CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-----CCCCCc
Q 010884 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-----SFNRPN 231 (498)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-----~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-----~~~r~n 231 (498)
|||||||++++|| |++.+..+....... +++|+++||||+++.+...+...+.......+.. ......
T Consensus 230 lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 230 KVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp EEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred EEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 9999999999998 999998887665432 3788999999999987664444333222222211 112233
Q ss_pred eEEEEEeecchhhH----HHHHHHHHHh-cCCccEEEEeCccchHHHHHHHHHhC---CCceEeecCCCCHHHHHHHHHH
Q 010884 232 LFYEVRYKDLLDDA----YADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDD 303 (498)
Q Consensus 232 i~~~v~~~~~~~~~----~~~l~~~l~~-~~~~~~IVf~~t~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~ 303 (498)
+...+......... ...+...+.. ..+.++||||+|++.|+.++..|.+. |+.+..|||+|++.+|..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 44333333322222 3333344433 45678999999999999999999986 8999999999999999999999
Q ss_pred HHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 304 f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
|++|+.+|||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+.+.|...++.+.+..
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887653
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-50 Score=416.62 Aligned_cols=345 Identities=20% Similarity=0.294 Sum_probs=275.7
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----------------
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------- 77 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~----------------- 77 (498)
..|.++.+.+.+.+.|.. +||..|+|+|.++|+.++.|+++++.||||+|||++|++|++..
T Consensus 15 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp SSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 346677888999999987 79999999999999999999999999999999999999998742
Q ss_pred -------CCeEEEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhh
Q 010884 78 -------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146 (498)
Q Consensus 78 -------~~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~ 146 (498)
.+++||++|+++|+.|+.+.++++ ++.+..+.++........ .+.. ..+++++||+.+..
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~I~v~Tp~~l~~--- 164 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER---GCHLLVATPGRLVD--- 164 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT---CCSEEEECHHHHHH---
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC---CCCEEEEChHHHHH---
Confidence 156999999999999999999874 566777777665544322 2222 36788888876532
Q ss_pred HHHHH-hhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC--CCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 147 MSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 147 ~~~l~-~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
.+. .......+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.+...+...+ .++..+
T Consensus 165 --~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~ 238 (417)
T 2i4i_A 165 --MMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL--DEYIFL 238 (417)
T ss_dssp --HHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC--SSCEEE
T ss_pred --HHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEE
Confidence 111 12234568999999999999988 8877776643222222 57899999999988766544443 344433
Q ss_pred ec---CCCCCceEEEEEeecchhhHHHHHHHHHHhc-CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHH
Q 010884 224 KS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (498)
Q Consensus 224 ~~---~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (498)
.. ....+++...+..... ..+...+.++++.. .+.++||||++++.++.+++.|.+.|+.+..+||+++.++|..
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 239 AVGRVGSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EEC----CCSSEEEEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EeCCCCCCccCceEEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHH
Confidence 22 2345566655554433 46777888888776 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 300 ~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
+++.|++|+.+|||||+++++|||+|++++||+|++|.|+..|+||+||+||.|+.|.|++|+++.|...++.+.+.
T Consensus 318 ~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 394 (417)
T 2i4i_A 318 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 394 (417)
T ss_dssp HHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHH
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777766554
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.1e-50 Score=410.21 Aligned_cols=345 Identities=19% Similarity=0.320 Sum_probs=278.2
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~ 87 (498)
...|..+.+.+.+.+.|+. +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++. ..+++||++|+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 4567778889999999987 8999999999999999999999999999999999999999874 35789999999
Q ss_pred HHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEE
Q 010884 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (498)
Q Consensus 88 ~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (498)
++|+.|+.+.+++++ +.+....++......... +..+ .+++++||+.+.. .+. .......+++|
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~---~~ivv~Tp~~l~~-----~l~~~~~~~~~~~~v 183 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDYG---QHVVAGTPGRVFD-----MIRRRSLRTRAIKML 183 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHHC---CSEEEECHHHHHH-----HHHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhcC---CCEEEcCHHHHHH-----HHHhCCccHhheeEE
Confidence 999999999998864 555666665554443222 2222 5677777765532 111 12334568999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec---CCCCCceEEEEEe
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRY 238 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~~ 238 (498)
||||||++.+++ |+..+.. +...+ ++.+++++|||+++.....+.. .+.++..+.. ....+++...+..
T Consensus 184 ViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (410)
T 2j0s_A 184 VLDEADEMLNKG--FKEQIYD---VYRYLPPATQVVLISATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQFFVA 256 (410)
T ss_dssp EEETHHHHTSTT--THHHHHH---HHTTSCTTCEEEEEESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEEEEE
T ss_pred EEccHHHHHhhh--hHHHHHH---HHHhCccCceEEEEEcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEEEEE
Confidence 999999999987 6654444 44444 4789999999999876543222 2345544332 2334455555555
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc
Q 010884 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (498)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~ 318 (498)
......+...+.+++.....+++||||++++.++.+++.|.+.|+.+..+||++++++|..+++.|++|+.+|||||+++
T Consensus 257 ~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 336 (410)
T 2j0s_A 257 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 336 (410)
T ss_dssp ESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGG
T ss_pred eCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 54445578888888888777899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
++|||+|++++||+|++|.+...|+||+||+||.|++|.+++|++..|...++.+.+..
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888776643
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.1e-49 Score=407.23 Aligned_cols=345 Identities=19% Similarity=0.258 Sum_probs=278.8
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~ 87 (498)
...|+++++.+.+.+.|.+ +||.+|+|+|.++++.++.++++++.+|||+|||++|++|++. ...++||++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 3568889999999999997 7999999999999999999999999999999999999999874 34589999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEE
Q 010884 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (498)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (498)
++|+.|+.+.++++ ++.+....++........ . .....+++++||+.+.. .+. .......+++|
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~---~~~~~~Ivv~T~~~l~~-----~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---R---LNETVHILVGTPGRVLD-----LASRKVADLSDCSLF 167 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---H---TTSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---H---hcCCCCEEEEchHHHHH-----HHHhCCcccccCCEE
Confidence 99999999999885 566666666655433211 1 12347888888876532 111 22335668999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEE--ecCCCCCceEEEEEee
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYK 239 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~ni~~~v~~~ 239 (498)
||||||++.+.+ |+..+ ..+...+ +..+++++|||++..+...+...+. .+..+ ......+++...+...
T Consensus 168 IiDEaH~~~~~~--~~~~~---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 168 IMDEADKMLSRD--FKTII---EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp EEESHHHHSSHH--HHHHH---HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEEC
T ss_pred EEeCchHhhhhc--hHHHH---HHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEEe
Confidence 999999987743 44433 3344444 4788999999999988776666554 33322 2233445554444333
Q ss_pred cchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc
Q 010884 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (498)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~ 319 (498)
. ...+...+..++.....+++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||++++
T Consensus 241 ~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (400)
T 1s2m_A 241 E-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319 (400)
T ss_dssp C-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred c-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 2 246677888888887788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcc
Q 010884 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
+|+|+|++++||++++|.|...|+||+||+||.|++|.|++|+++.|...++.+.+...
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998888877543
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.4e-49 Score=403.32 Aligned_cols=344 Identities=15% Similarity=0.210 Sum_probs=273.8
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~~ 88 (498)
..|+++.+.+.+.+.|+. +||.+|+|+|.++++.++.++++++.+|||+|||++|++|++.. ..++||++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 357778889999999987 79999999999999999999999999999999999999998753 45899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEE
Q 010884 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (498)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (498)
+|+.|+.+.++++ ++.+..+.++.......... ..+ ..+++++||+.+..... ........+++||
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~--~~~iiv~T~~~l~~~~~----~~~~~~~~~~~vV 157 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILALAR----NKSLNLKHIKHFI 157 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHS--CCSEEEECHHHHHHHHH----TTSSCCTTCSEEE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcC--CCCEEEECHHHHHHHHH----cCCccccccCEEE
Confidence 9999999999886 67788888777655443322 222 25788888876542110 1122345689999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC----CCCCceEEEEEe
Q 010884 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRY 238 (498)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~ni~~~v~~ 238 (498)
|||||++.+|. .|+..+..+ .... ++.+++++|||+++.....+...+. .+..+... ....++...+..
T Consensus 158 iDEaH~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 231 (391)
T 1xti_A 158 LDECDKMLEQL-DMRRDVQEI---FRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQQYYVK 231 (391)
T ss_dssp ECSHHHHTSSH-HHHHHHHHH---HHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCEEEEEE
T ss_pred EeCHHHHhhcc-chHHHHHHH---HhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccceEEEEE
Confidence 99999998862 355554443 3444 4788999999999987765555443 44433221 122334333333
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc
Q 010884 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (498)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~ 318 (498)
. ....+...+.++++....+++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||+++
T Consensus 232 ~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 310 (391)
T 1xti_A 232 L-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 310 (391)
T ss_dssp C-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred c-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChh
Confidence 2 235677888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHH-HHHHHHH
Q 010884 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR-RMEFILS 375 (498)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~-~~~~~~~ 375 (498)
++|+|+|++++||++++|.|+..|+||+||+||.|++|.+++++++.+.. .++.+.+
T Consensus 311 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999977543 3444443
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.9e-50 Score=409.28 Aligned_cols=346 Identities=19% Similarity=0.265 Sum_probs=262.9
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~~ 88 (498)
..|..+++.+.+.+.|++ +|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++. ..+++||++|++
T Consensus 40 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 456678888999999997 8999999999999999999999999999999999999999875 457899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEE
Q 010884 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (498)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (498)
+|+.|+.+.++++ +..+....++...... ...+... ..+++++||+.+.... .........+++|||
T Consensus 119 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~iiv~T~~~l~~~l----~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME--APHIIVGTPGRVFDML----NRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT--CCSEEEECHHHHHHHH----HHTSSCSTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC--CCCEEEECHHHHHHHH----HcCCcccccCcEEEE
Confidence 9999999999885 4555555554443322 2223322 3678888887653211 112233456899999
Q ss_pred eccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec---CCCCCceEEEEEeec
Q 010884 165 DEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKD 240 (498)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~~~~ 240 (498)
||||++.+|+ |...+.. +...+ ++.++++||||+++.....+... +.++..+.. .....++...+....
T Consensus 190 DEah~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (414)
T 3eiq_A 190 DEADEMLSRG--FKDQIYD---IFQKLNSNTQVVLLSATMPSDVLEVTKKF--MRDPIRILVKKEELTLEGIRQFYINVE 262 (414)
T ss_dssp CSHHHHHHTT--THHHHHH---HHTTSCTTCEEEEECSCCCHHHHHHHTTT--CSSCEEECCCCCCCCTTSCCEEEEECS
T ss_pred ECHHHhhccC--cHHHHHH---HHHhCCCCCeEEEEEEecCHHHHHHHHHH--cCCCEEEEecCCccCCCCceEEEEEeC
Confidence 9999999887 5544443 44444 68899999999998876644332 334444322 223344444444444
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc
Q 010884 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (498)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~ 320 (498)
....+...+..++.....+++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||+++++
T Consensus 263 ~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 342 (414)
T 3eiq_A 263 REEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342 (414)
T ss_dssp SSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC-
T ss_pred hHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcccc
Confidence 44568888999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
|||+|++++||++++|.|...|+||+||+||.|++|.|++++++.|...++.+.+..
T Consensus 343 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3eiq_A 343 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399 (414)
T ss_dssp -CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHT
T ss_pred CCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887776543
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.9e-48 Score=389.76 Aligned_cols=340 Identities=19% Similarity=0.295 Sum_probs=272.7
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHH
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIA 89 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~ 89 (498)
.|.++++.+.+.+.|++ +|+..|+|+|.++++.++.+ +++++.+|||+|||++|++|++. ...++||++|+++
T Consensus 7 ~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred chhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 46678888999999997 79999999999999999988 69999999999999999998874 2568999999999
Q ss_pred HHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEEEE
Q 010884 90 LMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAI 164 (498)
Q Consensus 90 L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~iVi 164 (498)
|+.|+.+.++++ ++.+....++........... ..+++++||+.+.. .+. .......+++|||
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~iiv~T~~~l~~-----~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-------NANIVVGTPGRILD-----HINRGTLNLKNVKYFIL 153 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-------TCSEEEECHHHHHH-----HHHTTCSCTTSCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-------CCCEEEecHHHHHH-----HHHcCCcccccCCEEEE
Confidence 999999999884 455666666655443322221 26788888876532 111 1223456899999
Q ss_pred eccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchh
Q 010884 165 DEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (498)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~ 243 (498)
||||++.+|+ |+..+.. +.... ++.+++++|||+++.....+...++ .+..+.... ..++...+... ...
T Consensus 154 DEah~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~-~~~ 224 (367)
T 1hv8_A 154 DEADEMLNMG--FIKDVEK---ILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKI-NANIEQSYVEV-NEN 224 (367)
T ss_dssp ETHHHHHTTT--THHHHHH---HHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCS-SSSSEEEEEEC-CGG
T ss_pred eCchHhhhhc--hHHHHHH---HHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecC-CCCceEEEEEe-ChH
Confidence 9999999987 5544444 44443 5789999999999988776555443 333333222 22343333322 234
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccc
Q 010884 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (498)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD 323 (498)
.+...+..+++ ..+.++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||+++++|+|
T Consensus 225 ~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 303 (367)
T 1hv8_A 225 ERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGID 303 (367)
T ss_dssp GHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCC
T ss_pred HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCC
Confidence 67777888776 34677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcc
Q 010884 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
+|++++||++++|.|+..|+||+||+||.|++|.+++++++.|...++.+.+...
T Consensus 304 ~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 358 (367)
T 1hv8_A 304 VNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMK 358 (367)
T ss_dssp CSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHT
T ss_pred cccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998888776543
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.1e-48 Score=396.43 Aligned_cols=338 Identities=17% Similarity=0.256 Sum_probs=268.4
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCc
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P 86 (498)
..|+.+++.+.+.+.|++ +|+..|+|+|.++++.++.+ +++++.+|||+|||++|++|++. ..+++||++|
T Consensus 5 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 567888999999999998 89999999999999999998 89999999999999999998874 3568999999
Q ss_pred HHHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH-HhhhhcCCccE
Q 010884 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNL 161 (498)
Q Consensus 87 ~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l-~~~~~~~~l~~ 161 (498)
+++|+.|+.+.+++++ +......+..... ......+++++||+.+.. .+ ........+++
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l~~-----~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEK----------NKQINAQVIVGTPGTVLD-----LMRRKLMQLQKIKI 148 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT----------TSCBCCSEEEECHHHHHH-----HHHTTCBCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhh----------hccCCCCEEEEcHHHHHH-----HHHcCCcccccCCE
Confidence 9999999999999854 3333333322111 111236788888776532 11 12233556899
Q ss_pred EEEeccccccc-cCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEe---cCCCCCceEEEE
Q 010884 162 VAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFYEV 236 (498)
Q Consensus 162 iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~~r~ni~~~v 236 (498)
|||||||++.+ ++ |+..+..+ .... ++.+++++|||+++.+.......+. .+..+. .....+++...+
T Consensus 149 iIiDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 221 (395)
T 3pey_A 149 FVLDEADNMLDQQG--LGDQCIRV---KRFLPKDTQLVLFSATFADAVRQYAKKIVP--NANTLELQTNEVNVDAIKQLY 221 (395)
T ss_dssp EEEETHHHHHHSTT--HHHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHSC--SCEEECCCGGGCSCTTEEEEE
T ss_pred EEEEChhhhcCccc--cHHHHHHH---HHhCCCCcEEEEEEecCCHHHHHHHHHhCC--CCeEEEccccccccccccEEE
Confidence 99999999987 44 55544443 3333 4789999999999887665544433 333222 233445555555
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
........+...+..++.....+++||||++++.++.+++.|++.|+.+..+||+++.++|..+++.|++|+.+|||||+
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 222 MDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp EECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred EEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 55555566777888888877788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCC------CHHHHHHHHhhcCCCCCCceEEEEEccchHHHH-HHHHH
Q 010884 317 AFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILS 375 (498)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~------s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~-~~~~~ 375 (498)
++++|||+|++++||+|++|. |+..|+||+|||||.|+.|.+++++...+...+ +.+.+
T Consensus 302 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 302 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp GGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999987665444 44333
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-48 Score=397.60 Aligned_cols=345 Identities=19% Similarity=0.246 Sum_probs=271.1
Q ss_pred ccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHhc------CCCeEE
Q 010884 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVL 82 (498)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l~------~~~~~l 82 (498)
......|+.+++.+.+.+.|++ +|+..|+|+|.++++.++.+ +++++.||||+|||++|++|++. ..+++|
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred ccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 3445668888999999999997 89999999999999999987 89999999999999999998874 234899
Q ss_pred EeCcHHHHHHHHHHHHHHcC-----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhh
Q 010884 83 VVSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHS 155 (498)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~ 155 (498)
|++|+++|+.|+.+.+++++ +......++..... ......+++++||+.+.. .+.+ ...
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ivv~T~~~l~~-----~~~~~~~~~ 165 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFID 165 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCSSC
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh---------hhcCCCCEEEECchHHHH-----HHHhcCCcC
Confidence 99999999999999888853 33343333322110 011235787777776522 1111 222
Q ss_pred cCCccEEEEeccccccc-cCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec---CCCCC
Q 010884 156 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRP 230 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ 230 (498)
...+++|||||||++.+ ++ |...+..+ .... ++.+++++|||+++.........+ ..+..+.. .....
T Consensus 166 ~~~~~~iViDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 238 (412)
T 3fht_A 166 PKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLD 238 (412)
T ss_dssp GGGCCEEEEETHHHHHSTTT--THHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSCT
T ss_pred hhhCcEEEEeCHHHHhhcCC--cHHHHHHH---HhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeecccccccc
Confidence 35589999999999987 44 55544443 3333 478999999999998877555443 34444432 23344
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCe
Q 010884 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (498)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (498)
++...+........+...+..++.....+++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 318 (412)
T 3fht_A 239 TIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 318 (412)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc
Confidence 55555555555567888888888887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEEccch-HHHHHHHHHhc
Q 010884 311 VVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKN 377 (498)
Q Consensus 311 vlvaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d-~~~~~~~~~~~ 377 (498)
|||||+++++|||+|++++||+|++| .+...|+||+||+||.|+.|.++++++..+ ...++.+.+..
T Consensus 319 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 392 (412)
T ss_dssp EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHH
T ss_pred EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHH
Confidence 99999999999999999999999999 578999999999999999999999998765 55565555543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-48 Score=386.56 Aligned_cols=324 Identities=18% Similarity=0.233 Sum_probs=259.2
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc-
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK- 101 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~- 101 (498)
++.+.+.|++ +|+.+|+|+|.++++.+++++++++.+|||+|||++|++|++....++||++|+++|+.|+.+.++++
T Consensus 2 ~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 2 NEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678899987 89999999999999999999999999999999999999999998999999999999999999999975
Q ss_pred ---CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEEEEeccccccccCCCC
Q 010884 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDF 177 (498)
Q Consensus 102 ---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~i~~~g~~f 177 (498)
++.+..+.++......... +. ..+++++||+.+... +. .......+++||+||||++.+|+ |
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---~~----~~~i~v~T~~~l~~~-----~~~~~~~~~~~~~iViDEah~~~~~~--~ 146 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINR---VR----NADIVVATPGRLLDL-----WSKGVIDLSSFEIVIIDEADLMFEMG--F 146 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHH---HT----TCSEEEECHHHHHHH-----HHTTSCCGGGCSEEEEESHHHHHHTT--C
T ss_pred hhcCCcEEEEECCcchHHHHhh---cC----CCCEEEECHHHHHHH-----HHcCCcchhhCcEEEEEChHHhhccc--c
Confidence 4666667766655433222 11 267888888866321 11 12234558999999999999988 5
Q ss_pred hHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhc
Q 010884 178 RPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256 (498)
Q Consensus 178 r~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~ 256 (498)
...+ ..+....+ ..+++++|||+++.....+...+ .++..+......+++...+...... .......+...
T Consensus 147 ~~~~---~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 218 (337)
T 2z0m_A 147 IDDI---KIILAQTSNRKITGLFSATIPEEIRKVVKDFI--TNYEEIEACIGLANVEHKFVHVKDD---WRSKVQALREN 218 (337)
T ss_dssp HHHH---HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHS--CSCEEEECSGGGGGEEEEEEECSSS---SHHHHHHHHTC
T ss_pred HHHH---HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhc--CCceeeecccccCCceEEEEEeChH---HHHHHHHHHhC
Confidence 5444 44444454 56678899999998877666544 3444454445555665555443321 22333566667
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p 336 (498)
.++++||||++++.++.+++.|. .+..+||+++..+|..++++|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC
Confidence 78899999999999999999886 58899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHH
Q 010884 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (498)
Q Consensus 337 ~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~ 374 (498)
.|+..|+||+||+||.|++|.+++|+. .|...++.+.
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC
T ss_pred CCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHH
Confidence 999999999999999999999999999 7766665553
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1e-49 Score=406.31 Aligned_cols=344 Identities=19% Similarity=0.258 Sum_probs=147.0
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~ 87 (498)
...|+++++.+.+.+.|.. +|+.+|+|+|.++++.++.++++++.+|||+|||++|++|++. ..+++||++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 4557788999999999997 8999999999999999999999999999999999999999874 35689999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEE
Q 010884 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (498)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (498)
++|+.|+.+.+.++ ++.+..+.++........... ..+++++||+.+..... ........+++||
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~~~~~----~~~~~~~~~~~vI 167 (394)
T 1fuu_A 99 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVFDNIQ----RRRFRTDKIKMFI 167 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHHHHHH----TTSSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHHHHHH----hCCcchhhCcEEE
Confidence 99999999998874 566777777766554433322 26788888876532110 1122345689999
Q ss_pred EeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC---CCCCceEEEEEeec
Q 010884 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKD 240 (498)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ni~~~v~~~~ 240 (498)
+||||++.+|+ |+..+..+... ..++.+++++|||+++.....+...+ ..+..+... ...+++...+....
T Consensus 168 iDEah~~~~~~--~~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 1fuu_A 168 LDEADEMLSSG--FKEQIYQIFTL--LPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRILVKKDELTLEGIKQFYVNVE 241 (394)
T ss_dssp EETHHHHHHTT--CHHHHHHHHHH--SCTTCEEEEECSSCCHHHHHHHHHHC--CSCEEEEECC----------------
T ss_pred EEChHHhhCCC--cHHHHHHHHHh--CCCCceEEEEEEecCHHHHHHHHHhc--CCCeEEEecCccccCCCceEEEEEcC
Confidence 99999999887 67665554322 22578899999999998776555544 344433221 22223322222222
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccc
Q 010884 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (498)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~ 320 (498)
....+...+..+++....+++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||+++++
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 321 (394)
T 1fuu_A 242 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 321 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhc
Confidence 22335566666776666778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHH
Q 010884 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
|+|+|++++||++++|.|+..|+||+||+||.|++|.|++|+++.|...++.+.+
T Consensus 322 Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 322 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp -------------------------------------------------------
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877766654
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.8e-47 Score=392.97 Aligned_cols=328 Identities=16% Similarity=0.213 Sum_probs=255.8
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
.+++.+.+++.||+ +|+|+|.++++.++.|+++++.||||+|||++|++|++. .++++||++|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 35678889999999 689999999999999999999999999999999998875 67899999999999999999999
Q ss_pred H---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccC--
Q 010884 100 E---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (498)
Q Consensus 100 ~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-- 174 (498)
+ .++.+..+.++.....+......+..+. .+++++||+.+.. +........+++|||||||++++||
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~Tp~~l~~------~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSK------NREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEEEHHHHHH------CHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEECHHHHHH------HHHHhccccccEEEEeChHhhhhccch
Confidence 9 4778999999988877666666666654 6788888776542 1122445579999999999999887
Q ss_pred -------CCChHH-HHHHHHHHH------h---CCCCCEEEEeecC-ChHHHHHHHHH-hCCCCCeEEecCCCCCceEEE
Q 010884 175 -------HDFRPS-YRKLSSLRN------Y---LPDVPILALTATA-APKVQKDVMES-LCLQNPLVLKSSFNRPNLFYE 235 (498)
Q Consensus 175 -------~~fr~~-~~~l~~l~~------~---~~~~~~l~lSAT~-~~~~~~~i~~~-l~~~~~~~~~~~~~r~ni~~~ 235 (498)
..|++. +..+..... . .++.+++++|||+ +......+... +.... .......+++...
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCS---SCCCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCc---Cccccccccchhe
Confidence 678887 455444332 1 1578999999994 44433233332 22111 1112333455444
Q ss_pred EEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceE-eecCCCCHHHHHHHHHHHHcCCCeEEEE
Q 010884 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (498)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~vlva 314 (498)
+... ++...+.++++.. +.++||||++++.++.++..|.+.|+.+. .+||. +|. ++.|++|+++||||
T Consensus 235 ~~~~----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 4433 2345566666664 47899999999999999999999999998 99994 444 99999999999999
Q ss_pred ----eCccccccccCC-ccEEEEeCCC--CCHHHHHHHHhhcCCCC----CCceEEEEEccchHHHHHHHHH
Q 010884 315 ----TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 315 ----T~a~~~GiD~p~-v~~VI~~~~p--~s~~~y~Q~~GRagR~g----~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
|+++++|||+|+ |++||+|++| .++..|+||+|||||.| +.|.+++++ .|...++.+.+
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 999999999999 9999999999 99999999999999988 478999998 45555444433
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.1e-48 Score=405.28 Aligned_cols=340 Identities=19% Similarity=0.254 Sum_probs=135.7
Q ss_pred cccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHhcC------CCeEEE
Q 010884 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (498)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l~~------~~~~lv 83 (498)
.+...|..+.+++.+.+.|+. +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. .+++||
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li 167 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEE
Confidence 345567778899999999998 89999999999999999987 899999999999999999999753 238999
Q ss_pred eCcHHHHHHHHHHHHHHcC-----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhc
Q 010884 84 VSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~ 156 (498)
++|+++|+.|+.+.+++++ +.......+..... ......+++++||+.+.. .+.+ ....
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Ivv~Tp~~l~~-----~l~~~~~~~~ 233 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFIDP 233 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCCCCG
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---------cccCCCCEEEECchHHHH-----HHHhcCCcCc
Confidence 9999999999988877742 33333333221110 011234677777765521 1111 2233
Q ss_pred CCccEEEEeccccccc-cCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCC---CCc
Q 010884 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPN 231 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~n 231 (498)
..+++|||||||++.+ ++ |...+.. +...+ ++.+++++|||++..+....... +..+..+..... ..+
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHHHHH---HHTTSCTTSEEEEEESCCCHHHHHHHHHH--SSSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHHHHH---HHhhCCccceEEEEeCCCCHHHHHHHHHH--cCCCeEEeccccccCcCC
Confidence 5689999999999987 44 4443333 33333 47899999999999887644443 344544432221 222
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeE
Q 010884 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (498)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (498)
+...+........+...+..++......++||||++++.++.++..|...|+.+..+||+++..+|..+++.|++|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222222223456667777777666778999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEEccch-HHHHHHH
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFI 373 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d-~~~~~~~ 373 (498)
||||+++++|||+|++++||+|++| .+...|+||+|||||.|+.|.+++|++..+ ...++.+
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i 455 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 455 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHH
Confidence 9999999999999999999999999 467899999999999999999999998765 4444444
No 18
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=420.04 Aligned_cols=376 Identities=18% Similarity=0.198 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC-----C----CeEEEeCcHHHHHHHH-HHHHHHcC---Cc
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~-----~----~~~lvl~P~~~L~~q~-~~~l~~~g---i~ 104 (498)
+|||+|.++++.++.|+++++.+|||+|||++|++|++.. . +++|||+|+++|+.|| ++.+++++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 5899999999999999999999999999999999998752 2 7899999999999999 99999865 67
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHH--HHhhhhcCCccEEEEeccccccccCCCChHHHH
Q 010884 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~--l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (498)
+..++++........... ...+++++||+.+........ .........+++|||||||++.. ++.++....
T Consensus 87 v~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVV------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHHHHH------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHH
T ss_pred EEEEeCCcchhhHHHhhh------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHH
Confidence 777776654322111111 137899999987753221000 11122345589999999999853 333433332
Q ss_pred HHHH--HHHhC---------CCCCEEEEeecCChH-------HHHHHH---HHhCCCCCe-------EEecCCCCCceEE
Q 010884 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQKDVM---ESLCLQNPL-------VLKSSFNRPNLFY 234 (498)
Q Consensus 183 ~l~~--l~~~~---------~~~~~l~lSAT~~~~-------~~~~i~---~~l~~~~~~-------~~~~~~~r~ni~~ 234 (498)
.+.. +.... |..++++||||+... ....+. ..+...... .+.....+|+..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2211 11221 678899999999873 333333 333321000 0111123444433
Q ss_pred EEEeecch------------------------------------------------------------------------
Q 010884 235 EVRYKDLL------------------------------------------------------------------------ 242 (498)
Q Consensus 235 ~v~~~~~~------------------------------------------------------------------------ 242 (498)
........
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221000
Q ss_pred ------------------------------------------------------------hhHHHHHHHHH----HhcC-
Q 010884 243 ------------------------------------------------------------DDAYADLCSVL----KANG- 257 (498)
Q Consensus 243 ------------------------------------------------------------~~~~~~l~~~l----~~~~- 257 (498)
..++..|.+++ ...+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 00011112222 2223
Q ss_pred CccEEEEeCccchHHHHHHHHHhC------CCceEeecCC--------CCHHHHHHHHHHHHcCCCeEEEEeCccccccc
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~------g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD 323 (498)
+.++||||++++.++.+++.|.+. |+.+..+||+ |+..+|..++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 688999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHH--------HHHHHhcccCCCCcchhhhhhhH-H
Q 010884 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM--------EFILSKNQSKNSQSFSTRERSSK-K 394 (498)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~ 394 (498)
+|+|++|||||+|+|+..|+||+|||||.| +.+++++...+.... +.++....... +... ..+..+ .
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i 555 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCV-QNMK-PEEYAHKI 555 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHT-TSSC-HHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHh-ccCC-HHHHHHHH
Confidence 999999999999999999999999988776 444444443331111 11111111110 1111 111111 2
Q ss_pred HHHHHHHHHHHhhccchhHHHHHhhhCCCC
Q 010884 395 SISDFSQMVDYCEGSGCRRKKILESFGEQI 424 (498)
Q Consensus 395 ~~~~~~~m~~~~~~~~Crr~~~~~~f~~~~ 424 (498)
....++.+..+++...|++...+.||++..
T Consensus 556 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (699)
T 4gl2_A 556 LELQMQSIMEKKMKTKRNIAKHYKNNPSLI 585 (699)
T ss_dssp HHHHHHHHHHCCSCCC----------CCSE
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhcCccee
Confidence 223457788899999999999999999864
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.7e-45 Score=411.89 Aligned_cols=390 Identities=18% Similarity=0.233 Sum_probs=270.1
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHH
Q 010884 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~l 98 (498)
.-.++...+...|+|. |+|+|.++|++++.|+++++.||||+|||++|++++. ..++++||++|+++|+.|+++.+
T Consensus 24 ~f~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 24 NFDELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp THHHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHH
T ss_pred chhhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 3344445556678886 8999999999999999999999999999999887765 35678999999999999999999
Q ss_pred HHc--CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCC
Q 010884 99 KEK--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (498)
Q Consensus 99 ~~~--gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (498)
++. ++.+..++++.. ..+..+++|+||+.+..... ........+++|||||||++.+|++
T Consensus 103 ~~~~~~~~v~~l~G~~~-------------~~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~lvViDEaH~l~d~~~- 164 (997)
T 4a4z_A 103 KETFDDVNIGLITGDVQ-------------INPDANCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYVNDQDR- 164 (997)
T ss_dssp HTTC--CCEEEECSSCE-------------ECTTSSEEEEEHHHHHHHHH----HTCSGGGGEEEEEECCTTCCCTTCT-
T ss_pred HHHcCCCeEEEEeCCCc-------------cCCCCCEEEECHHHHHHHHH----hCchhhcCCCEEEEECcccccccch-
Confidence 985 567777776543 12347899999987733211 1222345689999999999999984
Q ss_pred ChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCC---CCCeEEecCCCCCceEEEEEee-------------
Q 010884 177 FRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRYK------------- 239 (498)
Q Consensus 177 fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~r~ni~~~v~~~------------- 239 (498)
...+..+ ...+ +++++++||||+++.. ++..+++. ....++.......++...+...
T Consensus 165 -g~~~e~i---i~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~ 238 (997)
T 4a4z_A 165 -GVVWEEV---IIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 238 (997)
T ss_dssp -TCCHHHH---HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCB
T ss_pred -HHHHHHH---HHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhh
Confidence 4344444 3333 4799999999987653 34444432 2222333333322332222100
Q ss_pred -------------------------------------------------------------------------------c
Q 010884 240 -------------------------------------------------------------------------------D 240 (498)
Q Consensus 240 -------------------------------------------------------------------------------~ 240 (498)
.
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (997)
T 4a4z_A 239 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDG 318 (997)
T ss_dssp CHHHHHHHHHHHC-----------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCC-------------------------------------
Q 010884 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------------------------------- 283 (498)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~------------------------------------- 283 (498)
....++..+...+...+..++||||+|++.|+.++..|...|+
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 0123455677778777778999999999999999999987665
Q ss_pred --ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCC---------CHHHHHHHHhhcCCC
Q 010884 284 --SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRD 352 (498)
Q Consensus 284 --~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q~~GRagR~ 352 (498)
.+..|||+|++.+|..+++.|.+|.++|||||+++++|||+|+ +.||++++|+ |+.+|+||+|||||.
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 4789999999999999999999999999999999999999999 7777777776 999999999999999
Q ss_pred CC--CceEEEEE--ccchHHHHHHHHHhcccCCCCcc-hhhhh---hhHHHHHHHHHHHHHh------hccchhHHHHHh
Q 010884 353 QL--PSKSLLYY--GMDDRRRMEFILSKNQSKNSQSF-STRER---SSKKSISDFSQMVDYC------EGSGCRRKKILE 418 (498)
Q Consensus 353 g~--~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~m~~~~------~~~~Crr~~~~~ 418 (498)
|. .|.+++++ ...+...++.++........... ...+. ..+.....++.|++++ +...|++...++
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~ 557 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIK 557 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 94 66777777 34466667777654433221111 00000 0011112234555554 446799999999
Q ss_pred hhCCCCCcccCCCCCCCCCC
Q 010884 419 SFGEQIPVSLCKNSCDACKH 438 (498)
Q Consensus 419 ~f~~~~~~~~c~~~Cd~c~~ 438 (498)
+|++......|. .||+|..
T Consensus 558 ~l~~~~~~~~~~-~c~~c~~ 576 (997)
T 4a4z_A 558 VLQEELQTIEYK-SCEICDN 576 (997)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHhhhh-ccccccc
Confidence 998765444565 6999954
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.7e-45 Score=402.80 Aligned_cols=391 Identities=18% Similarity=0.221 Sum_probs=227.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHH
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
..|.. +|+..|||+|.++++.++.|+++++++|||+|||++|++|++.. .+++||++|+++|+.||.+.++
T Consensus 4 ~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Ccccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34554 89999999999999999999999999999999999999998732 2789999999999999999999
Q ss_pred Hc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhh-h-hcCCccEEEEecccccccc
Q 010884 100 EK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-H-SRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 100 ~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~-~-~~~~l~~iViDEaH~i~~~ 173 (498)
++ ++.+..+.++......... +.. ..+++++||+.+.. .+... . ....+++|||||||++..+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~~L~~-----~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQ---IVE---NNDIIILTPQILVN-----NLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHH---HHH---TCSEEEECHHHHHH-----HHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHhccCCceEEEEeCCccccccHHH---hcc---CCCEEEECHHHHHH-----HHhcCcccccccccEEEEeCCCcccCc
Confidence 86 6788777776543221111 111 27888888887633 12111 1 3455899999999999865
Q ss_pred CCCChHHHHHHHHHHHh-----CCCCCEEEEeecCC-------hHHHHHHHHHhCCCCCeEEecCC----------CCCc
Q 010884 174 GHDFRPSYRKLSSLRNY-----LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSSF----------NRPN 231 (498)
Q Consensus 174 g~~fr~~~~~l~~l~~~-----~~~~~~l~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~~~----------~r~n 231 (498)
. .++.....+ +... .+..++++||||+. ......+...+...+...+.... ..|.
T Consensus 152 ~-~~~~i~~~~--l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~ 228 (696)
T 2ykg_A 152 H-PYNMIMFNY--LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ 228 (696)
T ss_dssp C-HHHHHHHHH--HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCE
T ss_pred c-cHHHHHHHH--HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCc
Confidence 3 232222111 2221 25788999999998 44455554443211111110000 0000
Q ss_pred eEEEEE---------------------------------------------------------------e----------
Q 010884 232 LFYEVR---------------------------------------------------------------Y---------- 238 (498)
Q Consensus 232 i~~~v~---------------------------------------------------------------~---------- 238 (498)
..+... .
T Consensus 229 ~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (696)
T 2ykg_A 229 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 308 (696)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHH
T ss_pred eeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHH
Confidence 000000 0
Q ss_pred ------------------------------------------------------------------ecchhhHHHHHHHH
Q 010884 239 ------------------------------------------------------------------KDLLDDAYADLCSV 252 (498)
Q Consensus 239 ------------------------------------------------------------------~~~~~~~~~~l~~~ 252 (498)
......++..|.++
T Consensus 309 l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~l 388 (696)
T 2ykg_A 309 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 388 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 00012355566666
Q ss_pred HHhc----CCccEEEEeCccchHHHHHHHHHhCC----CceEee--------cCCCCHHHHHHHHHHHHc-CCCeEEEEe
Q 010884 253 LKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVAT 315 (498)
Q Consensus 253 l~~~----~~~~~IVf~~t~~~~~~l~~~L~~~g----~~~~~~--------h~~l~~~~R~~~~~~f~~-g~~~vlvaT 315 (498)
+... ++.++||||++++.++.+++.|.+.| +.+..+ ||+|++++|..++++|++ |+.+|||||
T Consensus 389 l~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp HHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred HHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 6554 56789999999999999999999988 888888 559999999999999998 999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcccCCCCcchhhhhhhHHH
Q 010884 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKS 395 (498)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (498)
+++++|||+|+|++|||||+|.|++.|+||+|| ||. ++|.++++++..+......+.......... ...+.....
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~ 543 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND---SILRLQTWD 543 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHH---HHHHHTTSC
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHH---HHHHhhccC
Confidence 999999999999999999999999999999999 998 689999999988875544331100000000 000000000
Q ss_pred HHHH-HHHHHHhhccchhHHHHHhhhCCCCCcccCCCCCCCCCCh
Q 010884 396 ISDF-SQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHP 439 (498)
Q Consensus 396 ~~~~-~~m~~~~~~~~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~~ 439 (498)
.+.+ .++.++.+...+.+.....+... .....|...|++|..+
T Consensus 544 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~~c~~~ 587 (696)
T 2ykg_A 544 EAVFREKILHIQTHEKFIRDSQEKPKPV-PDKENKKLLCRKCKAL 587 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCC-CCCSCEEEEESSSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCc-ccccchhhhccCCCce
Confidence 1112 44556666655555554444322 2234555679999875
No 21
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-46 Score=395.53 Aligned_cols=340 Identities=17% Similarity=0.226 Sum_probs=219.8
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcHHH
Q 010884 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIA 89 (498)
Q Consensus 18 ~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~~~ 89 (498)
.+..+.+.+.+.|.+ .|+..|+++|.+++++++.+ +++++.||||+|||++|+++++.. .+++||++|+++
T Consensus 122 ~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~ 200 (508)
T 3fho_A 122 XXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRE 200 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHH
T ss_pred ccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHH
Confidence 344556677777876 69999999999999999998 899999999999999999888742 458999999999
Q ss_pred HHHHHHHHHHHcCCceeEe-cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 90 LMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 90 L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
|+.|+.+.+++++...... ......... .......+++++||+.+.... .........+++|||||||
T Consensus 201 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~T~~~l~~~l----~~~~~~~~~~~lIIiDEaH 269 (508)
T 3fho_A 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVP-------KGAKIDAQIVIGTPGTVMDLM----KRRQLDARDIKVFVLDEAD 269 (508)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEC-----------------CCCCSEEEECHHHHHHHH----HTTCSCCTTCCEEEECCHH
T ss_pred HHHHHHHHHHHhCCccCeeEEEEeCCccc-------ccccCCCCEEEECHHHHHHHH----HcCCccccCCCEEEEechh
Confidence 9999999999864321111 111100000 001124788888887663311 1122235668999999999
Q ss_pred cccc-cCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec---CCCCCceEEEEEeecchh
Q 010884 169 CISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLLD 243 (498)
Q Consensus 169 ~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~ni~~~v~~~~~~~ 243 (498)
++++ ++ |...+..+ ...+ ++.+++++|||+++.........+ ..+..+.. ....+++...+.......
T Consensus 270 ~~~~~~~--~~~~~~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 270 NMLDQQG--LGDQSMRI---KHLLPRNTQIVLFSATFSERVEKYAERFA--PNANEIRLKTEELSVEGIKQLYMDCQSEE 342 (508)
T ss_dssp HHTTC----CHHHHHHH---HHHSCTTCEEEEEESCCSTHHHHHHHHHS--TTCEEECCCCCC----CCCCEEEEC--CH
T ss_pred hhcccCC--cHHHHHHH---HHhCCcCCeEEEEeCCCCHHHHHHHHHhc--CCCeEEEeccccCCcccceEEEEECCchH
Confidence 9987 44 66555544 3333 478999999999987765444333 33333221 222333333333333345
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccc
Q 010884 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (498)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD 323 (498)
.+...+..++.....+++||||++++.++.++..|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|||
T Consensus 343 ~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiD 422 (508)
T 3fho_A 343 HKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 422 (508)
T ss_dssp HHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CC
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCC
Confidence 67777888887777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEEcc-chHHHHHHHHHh
Q 010884 324 RKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGM-DDRRRMEFILSK 376 (498)
Q Consensus 324 ~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~~~~~~~-~d~~~~~~~~~~ 376 (498)
+|++++||++++| .|+..|+||+|||||.|++|.+++|+.. .+...++.+.+.
T Consensus 423 ip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~ 482 (508)
T 3fho_A 423 VSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEY 482 (508)
T ss_dssp CTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHH
T ss_pred ccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHH
Confidence 9999999999999 8899999999999999999999999984 444555555443
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.4e-43 Score=370.99 Aligned_cols=320 Identities=19% Similarity=0.257 Sum_probs=184.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----C
Q 010884 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (498)
Q Consensus 35 g~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~----g 102 (498)
+.-+|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+.+.++++ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3457999999999999999999999999999999999998653 788999999999999999999986 8
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh-hh-hcCCccEEEEeccccccccCCCChHH
Q 010884 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFRPS 180 (498)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~fr~~ 180 (498)
+.+..+.++........... . ..+++++||+.+.. .+.. .. ....+++|||||||++..|+. +...
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~ 151 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVL 151 (556)
T ss_dssp CCEEECCCC-----CHHHHH---H---HCSEEEECHHHHHH-----HHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHH
T ss_pred ceEEEEeCCCCcchhHHHhh---C---CCCEEEECHHHHHH-----HHHhCcccccccCCEEEEECCcccCCcch-HHHH
Confidence 88888877764443221111 1 26788888876532 1211 11 455689999999999998873 2222
Q ss_pred HHHHHHHHH----hCCCCCEEEEeecCChH----------HHHHHHHHhCCCCCeEE-------ecCCCCCceEEEEEee
Q 010884 181 YRKLSSLRN----YLPDVPILALTATAAPK----------VQKDVMESLCLQNPLVL-------KSSFNRPNLFYEVRYK 239 (498)
Q Consensus 181 ~~~l~~l~~----~~~~~~~l~lSAT~~~~----------~~~~i~~~l~~~~~~~~-------~~~~~r~ni~~~v~~~ 239 (498)
...+ +.. ..+..++++||||+... ....+...+........ .....++...+.....
T Consensus 152 ~~~~--~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (556)
T 4a2p_A 152 MTRY--LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 229 (556)
T ss_dssp HHHH--HHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC
T ss_pred HHHH--HHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC
Confidence 1111 111 13568899999999542 22223333332110000 0011222222211110
Q ss_pred c-------------------------------------------------------------------------------
Q 010884 240 D------------------------------------------------------------------------------- 240 (498)
Q Consensus 240 ~------------------------------------------------------------------------------- 240 (498)
.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (556)
T 4a2p_A 230 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 309 (556)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----------------------------------------------------------chhhHHHHHHHHHHh----cC
Q 010884 241 -----------------------------------------------------------LLDDAYADLCSVLKA----NG 257 (498)
Q Consensus 241 -----------------------------------------------------------~~~~~~~~l~~~l~~----~~ 257 (498)
....++..|.+++.. .+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~ 389 (556)
T 4a2p_A 310 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 389 (556)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC
Confidence 002244445555543 46
Q ss_pred CccEEEEeCccchHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHHc-CCCeEEEEeCcccccccc
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGIDR 324 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vlvaT~a~~~GiD~ 324 (498)
+.++||||+++..++.+++.|.+. |.....+||+|+.++|..++++|++ |+++|||||+++++|||+
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDi 469 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 469 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCc
Confidence 788999999999999999999876 5566677889999999999999999 999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHH
Q 010884 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (498)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~ 370 (498)
|+|++|||||+|+|+..|+||+|| ||. ++|.++++++..+....
T Consensus 470 p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 470 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp ---CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999999999999999 999 79999999998876543
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-43 Score=394.93 Aligned_cols=338 Identities=16% Similarity=0.120 Sum_probs=243.1
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q 93 (498)
+...++.+.+...+...|+| .|+|+|.++|+++..|++++++||||+|||++|++|++. .++++||++|+++|++|
T Consensus 164 ~~~~~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q 242 (1108)
T 3l9o_A 164 YDYTPIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQ 242 (1108)
T ss_dssp CCSSTTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred cccCCCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 34444444444455555555 599999999999999999999999999999999998875 48899999999999999
Q ss_pred HHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 010884 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 94 ~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (498)
+.+.+.+....+..+.+... ..+..+++++||+.+..... ........+++|||||||++.+|
T Consensus 243 ~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe~L~~~L~----~~~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 243 KYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTEILRSMLY----RGSEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp HHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHHHHHHHHH----HCSSHHHHEEEEEEETGGGTTSH
T ss_pred HHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChHHHHHHHH----cCccccccCCEEEEhhhhhcccc
Confidence 99999997667777766543 22347888888886643211 11112334899999999999988
Q ss_pred CCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHH-HHHHHHHhCCCCCeEEecCCCCCceEEEEEe------------e
Q 010884 174 GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV-QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY------------K 239 (498)
Q Consensus 174 g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~-~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~------------~ 239 (498)
+ |...+..+ ...+ +++++++||||++... ...+..........++........+...+.. .
T Consensus 306 ~--rg~~~e~i---i~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 306 E--RGVVWEET---IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp H--HHHHHHHH---HHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETT
T ss_pred c--hHHHHHHH---HHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccc
Confidence 6 55555544 3333 4789999999987642 2222222222222233332222222211110 0
Q ss_pred cc------------------------------------------hhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHH
Q 010884 240 DL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277 (498)
Q Consensus 240 ~~------------------------------------------~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~ 277 (498)
.. ....+..+...+...+..++||||++++.|+.++..
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHH
Confidence 00 022334455555566677899999999999999999
Q ss_pred HHhCCCc---------------------------------------eEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc
Q 010884 278 LSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (498)
Q Consensus 278 L~~~g~~---------------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~ 318 (498)
|...++. +..+||+|++.+|..+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653322 7899999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCC--------CCCHHHHHHHHhhcCCCC--CCceEEEEEccc-hHHHHHHHHHhc
Q 010884 319 GMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (498)
Q Consensus 319 ~~GiD~p~v~~VI~~~~--------p~s~~~y~Q~~GRagR~g--~~~~~~~~~~~~-d~~~~~~~~~~~ 377 (498)
++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++++. +...++.++...
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 99999999999997665 348889999999999999 688899998866 455566666543
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-42 Score=380.28 Aligned_cols=328 Identities=22% Similarity=0.245 Sum_probs=245.1
Q ss_pred CCCCC--hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHHHH
Q 010884 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALM 91 (498)
Q Consensus 17 ~~~~~--~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~L~ 91 (498)
|.+++ +++.+.+.+++ +||.+|+|+|.++++.+..++++++++|||+|||++|.++++ ..+++++|++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 44455 77888888887 899999999999999999999999999999999999998887 4578999999999999
Q ss_pred HHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhh-hhcCCccEEEEecc
Q 010884 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEA 167 (498)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~-~~~~~l~~iViDEa 167 (498)
.|+++.++. +|+.+..+.+....... .....+++++|||.+.. .+.+. .....+++||||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~-----~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKADS-----LIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHHH-----HHHTTCSGGGGCCEEEETTG
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHHH-----HHHcChhHHhhcCEEEEeee
Confidence 999999854 46777776665433211 01247888888887632 11111 12456899999999
Q ss_pred ccccccCCCChHHHHHH-HHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEE------eec
Q 010884 168 HCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (498)
Q Consensus 168 H~i~~~g~~fr~~~~~l-~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~------~~~ 240 (498)
|++.+|+ +.+.+..+ ..++...++.++++||||+++ ..++..+++. ..+..+.....+...+. ...
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 148 HLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEEE
T ss_pred eecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeeccC
Confidence 9999876 44444443 344445578999999999985 3556666652 22322222112211111 000
Q ss_pred ------chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC------------------------------CCc
Q 010884 241 ------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GIS 284 (498)
Q Consensus 241 ------~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~------------------------------g~~ 284 (498)
........+.+.+. +++++||||++++.++.++..|.+. +..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 00114555555554 3578999999999999999998753 235
Q ss_pred eEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE----eC---CCCCHHHHHHHHhhcCCCC--CC
Q 010884 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--LP 355 (498)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~----~~---~p~s~~~y~Q~~GRagR~g--~~ 355 (498)
+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.| .+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999 66 7899999999999999998 47
Q ss_pred ceEEEEEccchHH
Q 010884 356 SKSLLYYGMDDRR 368 (498)
Q Consensus 356 ~~~~~~~~~~d~~ 368 (498)
|.|+++++..+..
T Consensus 379 G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 379 GEAIIIVGKRDRE 391 (702)
T ss_dssp EEEEEECCGGGHH
T ss_pred ceEEEEecCccHH
Confidence 8999999988744
No 25
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.5e-43 Score=390.24 Aligned_cols=318 Identities=19% Similarity=0.267 Sum_probs=191.8
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc---
Q 010884 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (498)
Q Consensus 33 ~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~--- 101 (498)
.+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+...++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999999754 778999999999999999999885
Q ss_pred -CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcCCccEEEEeccccccccCCCCh
Q 010884 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFR 178 (498)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDEaH~i~~~g~~fr 178 (498)
++.+..+.++............ ..+++++||+.+.. .+.. ......+++|||||||++...+. ++
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~------~~~IvI~Tp~~L~~-----~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~ 390 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIE------DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YN 390 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHH------HCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEEETGGGCSTTCH-HH
T ss_pred cCceEEEEECCcchhhHHHHhcc------CCCEEEecHHHHHH-----HHHcCccccccCCCEEEEECccccCCCcc-HH
Confidence 8888888877644332111111 26788888876532 1111 11234589999999999988652 33
Q ss_pred HHHHHHHHHHHh-----CCCCCEEEEeecCCh----------HHHHHHHHHhCCCCCeEEe---------cCCCCCceEE
Q 010884 179 PSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLVLK---------SSFNRPNLFY 234 (498)
Q Consensus 179 ~~~~~l~~l~~~-----~~~~~~l~lSAT~~~----------~~~~~i~~~l~~~~~~~~~---------~~~~r~ni~~ 234 (498)
.... .+... .+..++++||||+.. .....+...+... .+.. ....++...+
T Consensus 391 ~i~~---~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~~ 465 (936)
T 4a2w_A 391 VLMT---RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDV 465 (936)
T ss_dssp HHHH---HHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEEE
T ss_pred HHHH---HHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcceE
Confidence 2222 22222 456889999999953 1222333333321 1110 0112222222
Q ss_pred EEEee---------------------------------------c-----------------------------------
Q 010884 235 EVRYK---------------------------------------D----------------------------------- 240 (498)
Q Consensus 235 ~v~~~---------------------------------------~----------------------------------- 240 (498)
..... .
T Consensus 466 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~ 545 (936)
T 4a2w_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (936)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 11110 0
Q ss_pred ----------------------------------------------------------------chhhHHHHHHHHHHh-
Q 010884 241 ----------------------------------------------------------------LLDDAYADLCSVLKA- 255 (498)
Q Consensus 241 ----------------------------------------------------------------~~~~~~~~l~~~l~~- 255 (498)
....++..|.++|..
T Consensus 546 ~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (936)
T 4a2w_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (936)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 001233445555544
Q ss_pred ---cCCccEEEEeCccchHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHHc-CCCeEEEEeCccc
Q 010884 256 ---NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFG 319 (498)
Q Consensus 256 ---~~~~~~IVf~~t~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vlvaT~a~~ 319 (498)
.++.++||||++++.++.|++.|.+. |..+..+||+|+..+|..++++|++ |+++|||||++++
T Consensus 626 ~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~ 705 (936)
T 4a2w_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (936)
T ss_dssp TTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchh
Confidence 35688999999999999999999986 5566778999999999999999998 9999999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHH
Q 010884 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (498)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~ 369 (498)
+|||+|+|++|||||+|+|+..|+||+|| ||. +.|.++++++..+...
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999999999999999999 999 6899999998876643
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-41 Score=373.20 Aligned_cols=325 Identities=20% Similarity=0.256 Sum_probs=242.9
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHH
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L 90 (498)
.|.++++++.+.+.+++ +||.+|+|+|.++++. +..+++++++||||+|||++|.++++. .+++++|++|+++|
T Consensus 9 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 9 PIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 46677888999999987 8999999999999999 788999999999999999999988862 57899999999999
Q ss_pred HHHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh-hhhcCCccEEEEec
Q 010884 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDE 166 (498)
Q Consensus 91 ~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDE 166 (498)
+.|+++.++. +|+.+....+....... .+ ...+++++|||.+.. .+.. ......+++|||||
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTYEKLDS-----LWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECHHHHHH-----HHHHCCGGGGGEEEEEECS
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcHHHHHH-----HHhCChhHhhccCEEEEec
Confidence 9999999854 47777776665433221 01 137888888887643 1111 11245689999999
Q ss_pred cccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceE------------E
Q 010884 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF------------Y 234 (498)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~------------~ 234 (498)
||++.+++ +.+.+..+ ....++.++++||||+++. .++..+++. ..+..+.....+. +
T Consensus 154 ~H~l~~~~--~~~~l~~i---~~~~~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 154 LHYLNDPE--RGPVVESV---TIRAKRRNLLALSATISNY--KQIAKWLGA---EPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp GGGGGCTT--THHHHHHH---HHHHHTSEEEEEESCCTTH--HHHHHHHTC---EEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred hhhcCCcc--cchHHHHH---HHhcccCcEEEEcCCCCCH--HHHHHHhCC---CccCCCCCCCCceEEEEecCCcccce
Confidence 99998755 44444443 3333489999999999752 456666652 1222211111111 1
Q ss_pred EEEeec-------chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCC-------------------------
Q 010884 235 EVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG------------------------- 282 (498)
Q Consensus 235 ~v~~~~-------~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g------------------------- 282 (498)
.+...+ .....+..+.+.+. .++++||||++++.++.++..|.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 111111 01344555555554 45789999999999999999998642
Q ss_pred -----------CceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE----eC-------CCCCHH
Q 010884 283 -----------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKSME 340 (498)
Q Consensus 283 -----------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~----~~-------~p~s~~ 340 (498)
..+..+||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+ .|.|..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24899999999999999999999999999999999999999999999999 99 899999
Q ss_pred HHHHHHhhcCCCCC--CceEEEEEccchH
Q 010884 341 AFYQESGRAGRDQL--PSKSLLYYGMDDR 367 (498)
Q Consensus 341 ~y~Q~~GRagR~g~--~~~~~~~~~~~d~ 367 (498)
+|.||+|||||.|. +|.|+++++..+.
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999984 7899999987763
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.7e-42 Score=384.67 Aligned_cols=292 Identities=16% Similarity=0.201 Sum_probs=221.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 010884 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
+.+.+.++..+|| +|+|+|.++++.++.|+|++++||||+|||++|+++++. .++.+||++|+++|+.|+.+.+++
T Consensus 65 ~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 3455677777899 599999999999999999999999999999988888765 678899999999999999999999
Q ss_pred ---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccC---
Q 010884 101 ---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--- 174 (498)
Q Consensus 101 ---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--- 174 (498)
.++.+..++++.....+......+..+. .+|+++||+.+.. +........+++|||||||+++.++
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV~Tp~rL~~------~l~~l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSK------NREKLSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEEEEHHHHHH------SHHHHHTSCCSEEEESCHHHHTTSSHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEEECHHHHHH------HHHhhcccCcCEEEEeCCCccccccccc
Confidence 4678888888887766666666666654 6787777765532 2222445679999999999987633
Q ss_pred ------CCChHH-HHHHHHHHH------h---CCCCCEEEEeecCCh-HHHHHHHHHhCCCCCeEEecCCCCCceEEEEE
Q 010884 175 ------HDFRPS-YRKLSSLRN------Y---LPDVPILALTATAAP-KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 237 (498)
Q Consensus 175 ------~~fr~~-~~~l~~l~~------~---~~~~~~l~lSAT~~~-~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~ 237 (498)
..|++. +..+..... . .++.+++++|||+.+ .+...+...+.. ..+.......+++...+.
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~--i~v~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN--FTVGRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--CCCCBCCCCCCCEEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--EEeccCCCCcCCceeEEE
Confidence 236665 555443332 0 147899999999544 333222322211 111222344556655554
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceE-eecCCCCHHHHHHHHHHHHcCCCeEEEE--
Q 010884 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA-- 314 (498)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~vlva-- 314 (498)
.. ++...|.++++.. ++++||||++++.++.++..|...|+.+. .+|| +|.+ +++|++|+++||||
T Consensus 294 ~~----~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 294 SS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp SC----CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEET
T ss_pred ec----CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEec
Confidence 44 2445566666664 37899999999999999999999999998 9999 2555 99999999999999
Q ss_pred --eCccccccccCC-ccEEEEeCCCC
Q 010884 315 --TVAFGMGIDRKD-VRLVCHFNIPK 337 (498)
Q Consensus 315 --T~a~~~GiD~p~-v~~VI~~~~p~ 337 (498)
|+++++|||+|+ |++|||||+|.
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.4e-42 Score=377.38 Aligned_cols=326 Identities=21% Similarity=0.266 Sum_probs=246.4
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~ 91 (498)
|.++++++.+.+.+++ +||.+|+|+|.++++. +..++++++++|||+|||++|.+|++. .+++++|++|+++|+
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 5667888999999988 8999999999999998 889999999999999999999988863 478999999999999
Q ss_pred HHHHHHHHH---cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh-hhhcCCccEEEEecc
Q 010884 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEA 167 (498)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEa 167 (498)
.|+++++++ +|+.+..+.+........ . ...+++++|||.+.. .+.. ......+++||||||
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-----~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDEW-----L----GKYDIIIATAEKFDS-----LLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCGG-----G----GGCSEEEECHHHHHH-----HHHHTCTTGGGEEEEEEETG
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCccccc-----c----CCCCEEEECHHHHHH-----HHHcChhhhhcCCEEEEECC
Confidence 999999864 477887777654332210 1 137898888887632 1111 122456899999999
Q ss_pred ccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEE------eec-
Q 010884 168 HCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD- 240 (498)
Q Consensus 168 H~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~------~~~- 240 (498)
|++.+|+ +.+.+..+..... ++.++++||||+++. .++..+++. ..+..+.....+...+. ...
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~rp~~l~~~~~~~~~~~~~~~ 218 (720)
T 2zj8_A 148 HLIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP--EELAEWLNA---ELIVSDWRPVKLRRGVFYQGFVTWEDG 218 (720)
T ss_dssp GGGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--HHHHHHTTE---EEEECCCCSSEEEEEEEETTEEEETTS
T ss_pred cccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--HHHHHHhCC---cccCCCCCCCcceEEEEeCCeeecccc
Confidence 9998765 4444444322222 378999999999753 456666642 12222221111111111 100
Q ss_pred ---chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC------------------C---------------Cc
Q 010884 241 ---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------G---------------IS 284 (498)
Q Consensus 241 ---~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~------------------g---------------~~ 284 (498)
....+...+.+.+.. ++++||||++++.++.++..|.+. + ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 296 (720)
T 2zj8_A 219 SIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGG 296 (720)
T ss_dssp CEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTT
T ss_pred chhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcC
Confidence 012344555555543 578999999999999999999753 1 24
Q ss_pred eEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE----eC----CCCCHHHHHHHHhhcCCCC--C
Q 010884 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ--L 354 (498)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~----~~----~p~s~~~y~Q~~GRagR~g--~ 354 (498)
+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.| .
T Consensus 297 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~ 376 (720)
T 2zj8_A 297 VAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDE 376 (720)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCC
Confidence 899999999999999999999999999999999999999999999998 66 6899999999999999998 4
Q ss_pred CceEEEEEccchHH
Q 010884 355 PSKSLLYYGMDDRR 368 (498)
Q Consensus 355 ~~~~~~~~~~~d~~ 368 (498)
.|.|+++++..+..
T Consensus 377 ~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 377 VGEGIIVSTSDDPR 390 (720)
T ss_dssp EEEEEEECSSSCHH
T ss_pred CceEEEEecCccHH
Confidence 78899999988744
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.7e-42 Score=363.20 Aligned_cols=316 Identities=20% Similarity=0.254 Sum_probs=209.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----CCce
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~----gi~~ 105 (498)
+|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+.+.++++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5899999999999999999999999999999999998643 778999999999999999999986 8888
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcCCccEEEEeccccccccCCCChHHHHH
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (498)
..+.++........... . ..+++++||+.+.. .+.. ......+++|||||||++..++. ++.....
T Consensus 84 ~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~ 151 (555)
T 3tbk_A 84 ASISGATSDSVSVQHII---E---DNDIIILTPQILVN-----NLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFR 151 (555)
T ss_dssp EEECTTTGGGSCHHHHH---H---HCSEEEECHHHHHH-----HHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHH
T ss_pred EEEcCCCcchhhHHHHh---c---CCCEEEECHHHHHH-----HHhcCcccccccCCEEEEECccccCCcch-HHHHHHH
Confidence 88887764432211111 1 26788888876532 1111 11345589999999999988652 3322211
Q ss_pred HHHHHHh-----CCCCCEEEEeecCChH----------HHHHHHHHhCCCCCeEEe---------cCCCCCceEEEEEee
Q 010884 184 LSSLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK---------SSFNRPNLFYEVRYK 239 (498)
Q Consensus 184 l~~l~~~-----~~~~~~l~lSAT~~~~----------~~~~i~~~l~~~~~~~~~---------~~~~r~ni~~~v~~~ 239 (498)
+ +... .+..++++||||+... ....+...++. ..+.. ....++...+.....
T Consensus 152 ~--~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (555)
T 3tbk_A 152 Y--LDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA--SVIATVRDNVAELEQVVYKPQKISRKVAS 227 (555)
T ss_dssp H--HHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC--SEEECCCSCHHHHHTTCCCCCEEEEECCC
T ss_pred H--HHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC--eeeeccccCHHHHHhhcCCCceEEEEecC
Confidence 1 2222 1567899999999652 12223333332 11111 112233333222110
Q ss_pred c-------------------------------------------------------------------------------
Q 010884 240 D------------------------------------------------------------------------------- 240 (498)
Q Consensus 240 ~------------------------------------------------------------------------------- 240 (498)
.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (555)
T 3tbk_A 228 RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHL 307 (555)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------------------------------------------------------chhhHHHHHHHHHHh----c
Q 010884 241 ------------------------------------------------------------LLDDAYADLCSVLKA----N 256 (498)
Q Consensus 241 ------------------------------------------------------------~~~~~~~~l~~~l~~----~ 256 (498)
....++..+.+++.. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 387 (555)
T 3tbk_A 308 RKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLK 387 (555)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccC
Confidence 001234444445533 4
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCC------------CceEeecCCCCHHHHHHHHHHHHc-CCCeEEEEeCccccccc
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGID 323 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g------------~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vlvaT~a~~~GiD 323 (498)
+..++||||+++..++.++..|...| .....+||+|++++|..++++|++ |+++|||||+++++|||
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGID 467 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCc
Confidence 56889999999999999999999864 344556679999999999999998 99999999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHH
Q 010884 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (498)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~ 371 (498)
+|++++|||||+|+|+..|+||+|| ||. ++|.+++|+++.+.....
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 9999999999999999999999999 999 899999999988766553
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-41 Score=375.50 Aligned_cols=322 Identities=17% Similarity=0.189 Sum_probs=239.3
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 010884 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (498)
Q Consensus 31 ~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~ 107 (498)
...|||. |+|+|.++++++..|+++++++|||+|||++|+++++. .++++||++|+++|++|+.+.+.+....+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 4458886 99999999999999999999999999999999887764 5789999999999999999999986446666
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHH
Q 010884 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (498)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (498)
+.++... .+..+++++|||++.... .........+++|||||||++.+|+. ...+ ..+
T Consensus 159 ltGd~~~-------------~~~~~IvV~Tpe~L~~~L----~~~~~~l~~l~lVViDEaH~l~d~~r--g~~~---e~i 216 (1010)
T 2xgj_A 159 MTGDITI-------------NPDAGCLVMTTEILRSML----YRGSEVMREVAWVIFDEVHYMRDKER--GVVW---EET 216 (1010)
T ss_dssp ECSSCEE-------------CTTCSEEEEEHHHHHHHH----HHTCTTGGGEEEEEEETGGGGGCTTT--HHHH---HHH
T ss_pred EeCCCcc-------------CCCCCEEEEcHHHHHHHH----HcCcchhhcCCEEEEechhhhcccch--hHHH---HHH
Confidence 6655431 124788889888764211 11223345689999999999998863 3333 333
Q ss_pred HHhC-CCCCEEEEeecCChHHHHHHHHHhC--CCCCe-EEecCCCCCceEEEEEeec-----------------------
Q 010884 188 RNYL-PDVPILALTATAAPKVQKDVMESLC--LQNPL-VLKSSFNRPNLFYEVRYKD----------------------- 240 (498)
Q Consensus 188 ~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~--~~~~~-~~~~~~~r~ni~~~v~~~~----------------------- 240 (498)
...+ ++.++++||||+++.. ++..++. ...+. ++........+...+....
T Consensus 217 l~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 4444 4789999999997643 2222221 12222 2222222222211111100
Q ss_pred ------------------------ch-------hhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc-----
Q 010884 241 ------------------------LL-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS----- 284 (498)
Q Consensus 241 ------------------------~~-------~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~----- 284 (498)
.. ...+..+...+...+..++||||++++.|+.++..|...++.
T Consensus 295 ~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 374 (1010)
T 2xgj_A 295 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 374 (1010)
T ss_dssp HTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHH
T ss_pred HHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHH
Confidence 00 122344555555556678999999999999999999775542
Q ss_pred ----------------------------------eEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEE
Q 010884 285 ----------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (498)
Q Consensus 285 ----------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~V 330 (498)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 375 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 375 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEE
Confidence 7889999999999999999999999999999999999999999999
Q ss_pred EE----eCC----CCCHHHHHHHHhhcCCCCC--CceEEEEEccc-hHHHHHHHHHhc
Q 010884 331 CH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (498)
Q Consensus 331 I~----~~~----p~s~~~y~Q~~GRagR~g~--~~~~~~~~~~~-d~~~~~~~~~~~ 377 (498)
|+ |+. |.|+..|+||+|||||.|. .|.|++++++. +...++.++...
T Consensus 455 I~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 455 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp ESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 99 999 8999999999999999997 59999999866 666666666543
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-40 Score=345.16 Aligned_cols=314 Identities=19% Similarity=0.242 Sum_probs=236.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHc-CC---ceeEec
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~-gi---~~~~~~ 109 (498)
+|+|+|.++++.++.+ ++++.+|||+|||++++++++. ..+++|||+|+++|+.||.+.+.++ +. .+..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 5899999999999999 9999999999999999988765 4789999999999999999999986 65 677777
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHH-HHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLR 188 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l-~~l~ 188 (498)
+..........+. ..+++++||+.+..... ........+++|||||||++.... .|..+ ..+.
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l~~~~~----~~~~~~~~~~~vIiDEaH~~~~~~-----~~~~~~~~~~ 151 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTIENDLL----AGRISLEDVSLIVFDEAHRAVGNY-----AYVFIAREYK 151 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHHHHHHH----TTSCCTTSCSEEEEETGGGCSTTC-----HHHHHHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHHHHHHh----cCCcchhhceEEEEECCcccCCCC-----cHHHHHHHHH
Confidence 7776665444332 26788888886643211 112235568999999999997532 12222 3344
Q ss_pred HhCCCCCEEEEeecCCh--HHHHHHHHHhCCCCCeEEecC-------CCCCceEEEEEeec-------------------
Q 010884 189 NYLPDVPILALTATAAP--KVQKDVMESLCLQNPLVLKSS-------FNRPNLFYEVRYKD------------------- 240 (498)
Q Consensus 189 ~~~~~~~~l~lSAT~~~--~~~~~i~~~l~~~~~~~~~~~-------~~r~ni~~~v~~~~------------------- 240 (498)
...+..++++||||+.. .....+...++...+...... +......+......
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999983 344555666554332221110 00111111000000
Q ss_pred --------------------------------------------------------------------------------
Q 010884 241 -------------------------------------------------------------------------------- 240 (498)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (498)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ----------------------------chhhHHHHHHHHHHh----cCCccEEEEeCccchHHHHHHHHHhCCCceEee
Q 010884 241 ----------------------------LLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (498)
Q Consensus 241 ----------------------------~~~~~~~~l~~~l~~----~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~ 288 (498)
....++..+.+++.. .++.++||||++++.++.+++.|.+.|+.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 112244555566655 467899999999999999999999999999999
Q ss_pred cC--------CCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEE
Q 010884 289 HA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (498)
Q Consensus 289 h~--------~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~ 360 (498)
|| +++.++|..++++|++|+.+|||||+++++|||+|++++||++++|+|+..|.||+||+||.|+ |.++.
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred EEccchHHH
Q 010884 361 YYGMDDRRR 369 (498)
Q Consensus 361 ~~~~~d~~~ 369 (498)
++...+.+.
T Consensus 471 l~~~~t~ee 479 (494)
T 1wp9_A 471 LMAKGTRDE 479 (494)
T ss_dssp EEETTSHHH
T ss_pred EEecCCHHH
Confidence 999876543
No 32
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-42 Score=374.13 Aligned_cols=315 Identities=20% Similarity=0.192 Sum_probs=241.7
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g------~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q 93 (498)
...+.+.+.+.+|| +|+++|.++++.++.+ .++++++|||+|||++|++|++. .+..++|++||++|+.|
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQ 432 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHH
Confidence 33455566566999 8999999999998875 58999999999999999999875 37899999999999999
Q ss_pred HHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc
Q 010884 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (498)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (498)
+.+.++++ |+.+..++++.....+...+..+..+. .+++++||+.+. .......+++|||||+|+
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~---------~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALIQ---------EDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHHH---------HCCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHh---------hhhhccCCceEEecccch
Confidence 99998874 788999999999888888888887765 788888886542 223456689999999999
Q ss_pred ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-CCCCCceEEEEEeecchhhHHHH
Q 010884 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (498)
Q Consensus 170 i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ni~~~v~~~~~~~~~~~~ 248 (498)
+ |...| ..++...++.++++||||+.+..... ...+..+..++.. +..+..+...+.... ....
T Consensus 502 ~---g~~qr------~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----~~~~ 566 (780)
T 1gm5_A 502 F---GVKQR------EALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPMD----RVNE 566 (780)
T ss_dssp C--------------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCSS----THHH
T ss_pred h---hHHHH------HHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEeccc----hHHH
Confidence 5 43322 12333345789999999998876552 2233223333322 233444433332222 2233
Q ss_pred HHHHHHh--cCCccEEEEeCcc--------chHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEe
Q 010884 249 LCSVLKA--NGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (498)
Q Consensus 249 l~~~l~~--~~~~~~IVf~~t~--------~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT 315 (498)
+.+.+.. ..+.+++|||++. +.++.+++.|.+ .++.+..+||+|++++|..++++|++|+++|||||
T Consensus 567 l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 567 VYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp HHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS
T ss_pred HHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 3344432 2456799999966 457889999988 47899999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCC-CHHHHHHHHhhcCCCCCCceEEEEEcc
Q 010884 316 VAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
+++++|||+|++++||++++|. +...|.||+||+||.|++|.|++++++
T Consensus 647 ~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 9999999999999999999996 789999999999999999999999984
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.3e-41 Score=372.33 Aligned_cols=323 Identities=19% Similarity=0.246 Sum_probs=191.7
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc-
Q 010884 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK- 101 (498)
Q Consensus 31 ~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~l~~~- 101 (498)
...+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+...++++
T Consensus 241 ~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999998753 788999999999999999999986
Q ss_pred ---CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh-hh-hcCCccEEEEeccccccccCCC
Q 010884 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHD 176 (498)
Q Consensus 102 ---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~ 176 (498)
++.+..+.++.......... .. ..+++++||+.+.. .+.. .. ....+++|||||||++...+.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~---~~---~~~Ivv~Tp~~l~~-----~l~~~~~~~~~~~~~iViDEaH~~~~~~~- 388 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKV---IE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP- 388 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHH---HH---TCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEETTGGGCSTTSH-
T ss_pred ccCCceEEEEeCCcchhhhHHHh---hC---CCCEEEEchHHHHH-----HHHhccccccccCCEEEEECccccCCCcc-
Confidence 88888888876544322211 11 26788888886532 1211 11 344589999999999987542
Q ss_pred ChHHHHHHHHHHHh-----CCCCCEEEEeecCCh----------HHHHHHHHHhCCCCCeE-------EecCCCCCceEE
Q 010884 177 FRPSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLV-------LKSSFNRPNLFY 234 (498)
Q Consensus 177 fr~~~~~l~~l~~~-----~~~~~~l~lSAT~~~----------~~~~~i~~~l~~~~~~~-------~~~~~~r~ni~~ 234 (498)
++.... .+... .+..++++||||+.. .....+...++...... +.....++...+
T Consensus 389 ~~~i~~---~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~ 465 (797)
T 4a2q_A 389 YNVLMT---RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (797)
T ss_dssp HHHHHH---HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEE
T ss_pred HHHHHH---HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEE
Confidence 222221 22222 467889999999963 22223333333210000 000112222222
Q ss_pred EEEee---------------------------------------c-----------------------------------
Q 010884 235 EVRYK---------------------------------------D----------------------------------- 240 (498)
Q Consensus 235 ~v~~~---------------------------------------~----------------------------------- 240 (498)
..... .
T Consensus 466 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 545 (797)
T 4a2q_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (797)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 11110 0
Q ss_pred ----------------------------------------------------------------chhhHHHHHHHHHHh-
Q 010884 241 ----------------------------------------------------------------LLDDAYADLCSVLKA- 255 (498)
Q Consensus 241 ----------------------------------------------------------------~~~~~~~~l~~~l~~- 255 (498)
....++..|.+++..
T Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (797)
T 4a2q_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (797)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Confidence 001234445555543
Q ss_pred ---cCCccEEEEeCccchHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHHc-CCCeEEEEeCccc
Q 010884 256 ---NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFG 319 (498)
Q Consensus 256 ---~~~~~~IVf~~t~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vlvaT~a~~ 319 (498)
.++.++||||++++.++.++..|.+. |..+..+||+|+.++|..++++|++ |+++|||||++++
T Consensus 626 ~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~ 705 (797)
T 4a2q_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (797)
T ss_dssp HHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchh
Confidence 56688999999999999999999874 5566778999999999999999999 9999999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHH
Q 010884 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (498)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~ 370 (498)
+|||+|+|++||||++|+|+..|+||+|| ||. ++|.++++++..+....
T Consensus 706 ~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp -----CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 99999999999999999999999999999 999 79999999998776543
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5e-39 Score=364.75 Aligned_cols=322 Identities=20% Similarity=0.202 Sum_probs=252.0
Q ss_pred CCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHH
Q 010884 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (498)
Q Consensus 19 ~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~----g~--dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~ 89 (498)
.+.+.....+.+...|||. +||+|.++++.++. ++ ++++++|||+|||++|+++++ ..++.++|++||++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 663 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHH
Confidence 3556667778888889997 69999999999886 65 899999999999999987764 45789999999999
Q ss_pred HHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEe
Q 010884 90 LMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (498)
Q Consensus 90 L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViD 165 (498)
|++|+.+.+++. ++.+..+++..+..........+..+. .+++++||+.+.. ......+++||||
T Consensus 664 La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll~~---------~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLLQS---------DVKFKDLGLLIVD 732 (1151)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHHHS---------CCCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhC---------CccccccceEEEe
Confidence 999999999863 577888888888888777888887765 7888888865532 2335668999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec-CCCCCceEEEEEeecchhh
Q 010884 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDD 244 (498)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~ni~~~v~~~~~~~~ 244 (498)
|||++ |... +.. +....++.++++||||+.+....... .++.++.++.. +..+..+...+..... ..
T Consensus 733 EaH~~---g~~~---~~~---l~~l~~~~~vl~lSATp~p~~l~~~~--~~~~~~~~i~~~~~~r~~i~~~~~~~~~-~~ 800 (1151)
T 2eyq_A 733 EEHRF---GVRH---KER---IKAMRANVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYDS-MV 800 (1151)
T ss_dssp SGGGS---CHHH---HHH---HHHHHTTSEEEEEESSCCCHHHHHHH--TTTSEEEECCCCCCBCBCEEEEEEECCH-HH
T ss_pred chHhc---ChHH---HHH---HHHhcCCCCEEEEcCCCChhhHHHHH--hcCCCceEEecCCCCccccEEEEecCCH-HH
Confidence 99994 4221 122 33333578899999999988765333 34444333322 2334444443333221 22
Q ss_pred HHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccccc
Q 010884 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (498)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~Gi 322 (498)
....+...+. .+++++|||++++.++.+++.|++. +..+..+||+|++.+|..++++|.+|+++|||||+++++||
T Consensus 801 i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 801 VREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 2333333332 4678999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeCC-CCCHHHHHHHHhhcCCCCCCceEEEEEccch
Q 010884 323 DRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (498)
Q Consensus 323 D~p~v~~VI~~~~-p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d 366 (498)
|+|++++||+++. +.++.+|+|++||+||.|+.|.|++++...+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999998 5699999999999999999999999987653
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1e-38 Score=340.91 Aligned_cols=319 Identities=18% Similarity=0.188 Sum_probs=233.7
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----cCCc
Q 010884 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIA 104 (498)
Q Consensus 32 ~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~----~gi~ 104 (498)
+.+|+ .++|.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+.+.. +|+.
T Consensus 78 r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~ 154 (844)
T 1tf5_A 78 RVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLT 154 (844)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 46899 89999999999999999 99999999999999999973 467899999999999988777665 5899
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH---HhhhhcCCccEEEEecccccc-ccCCC----
Q 010884 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD---- 176 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~~---- 176 (498)
+..+.++.....+...+. .+|+|+||-.+.-..+...+ ........+.++||||||.|+ +.+..
T Consensus 155 v~~i~gg~~~~~r~~~~~--------~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 155 VGLNLNSMSKDEKREAYA--------ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp EEECCTTSCHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred EEEEeCCCCHHHHHHhcC--------CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 998888877665443321 57877777655322112221 112335678999999999987 54311
Q ss_pred ------ChHHHHHHHHHHHhCC----------CCCEE-----------------EEeecCCh---HHH------------
Q 010884 177 ------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQ------------ 208 (498)
Q Consensus 177 ------fr~~~~~l~~l~~~~~----------~~~~l-----------------~lSAT~~~---~~~------------ 208 (498)
-...|..+..+...+| ..+++ ++|||.+. .+.
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 0123455555555554 23444 55666432 111
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q 010884 209 ---------------------------------------------------------------------------KDVME 213 (498)
Q Consensus 209 ---------------------------------------------------------------------------~~i~~ 213 (498)
..+.+
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 11122
Q ss_pred HhCCCCCeEEecCCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEee
Q 010884 214 SLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (498)
Q Consensus 214 ~l~~~~~~~~~~~~~r~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~ 288 (498)
.+++. ++..+.++|.+... +.+. ...+|+..|...+.. ..+.++||||+|++.++.|+..|.+.|+++..+
T Consensus 387 iY~l~---vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vL 462 (844)
T 1tf5_A 387 IYNMQ---VVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVL 462 (844)
T ss_dssp HHCCC---EEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEE
T ss_pred HhCCc---eEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 22211 11223444444321 2222 235678888877754 246789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEE
Q 010884 289 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (498)
Q Consensus 289 h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~ 360 (498)
||++.+.+|..+.++++.| .|+|||+++|+|+|++ ++.+||+|++|.|.+.|.||+||+||.|.+|.++.
T Consensus 463 hg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~ 540 (844)
T 1tf5_A 463 NAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 540 (844)
T ss_dssp CSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred eCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEE
Confidence 9999888887776666655 6999999999999999 78899999999999999999999999999999999
Q ss_pred EEccchH
Q 010884 361 YYGMDDR 367 (498)
Q Consensus 361 ~~~~~d~ 367 (498)
|++.+|.
T Consensus 541 ~vs~eD~ 547 (844)
T 1tf5_A 541 YLSMEDE 547 (844)
T ss_dssp EEETTSS
T ss_pred EecHHHH
Confidence 9998774
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.9e-41 Score=377.38 Aligned_cols=323 Identities=15% Similarity=0.213 Sum_probs=240.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHH
Q 010884 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~ 99 (498)
+.+.+.+.+.+||. | |+|.++|+.++.|+|++++||||+|||+ |++|++. .++.+||++||++|+.|+.+.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 45667788889999 9 9999999999999999999999999998 8888764 46789999999999999999998
Q ss_pred Hc----CC----ceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 100 EK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 100 ~~----gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
++ ++ .+..+.++.....+......+.. .+|+++||+.+.. +.. .+..+++|||||||++.
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~TP~~L~~------~l~--~L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITTTQFLSK------HYR--ELGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEEHHHHHH------CST--TSCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEcHHHHHH------HHH--HhccCCEEEEeChhhhh
Confidence 74 45 66777777766655444444443 6787777765532 111 14468999999999999
Q ss_pred ccCCCChHHHHHHHHHH----Hh-CCCCCEEEEeecCChHHHH---HHHH-HhCCCCCeEEecCCCCCceEEEEEeecch
Q 010884 172 SWGHDFRPSYRKLSSLR----NY-LPDVPILALTATAAPKVQK---DVME-SLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (498)
Q Consensus 172 ~~g~~fr~~~~~l~~l~----~~-~~~~~~l~lSAT~~~~~~~---~i~~-~l~~~~~~~~~~~~~r~ni~~~v~~~~~~ 242 (498)
+||+++++.+..++-.. .. .+..+++++|||+++. .. .+.. ..... +.......+++...+..
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~---- 260 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN---- 260 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES----
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec----
Confidence 99877766665543110 01 1367899999999886 21 1121 11111 11112233455544442
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEE----eCcc
Q 010884 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAF 318 (498)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlva----T~a~ 318 (498)
..+...|.++++.. +.++||||+|++.|+.+++.|.+. +.+..+||++ ..+++.|++|+++|||| |+++
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 23445566677665 467999999999999999999988 9999999998 37789999999999999 8999
Q ss_pred ccccccCCc-cEEEEeCCC-------------------------------------------------------------
Q 010884 319 GMGIDRKDV-RLVCHFNIP------------------------------------------------------------- 336 (498)
Q Consensus 319 ~~GiD~p~v-~~VI~~~~p------------------------------------------------------------- 336 (498)
++|||+|+| ++|||+++|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999995 999999999
Q ss_pred ----------CCHHHHHHHHhhcCCCCCCc--eEEEEEccchHHHHHHHHHh
Q 010884 337 ----------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 337 ----------~s~~~y~Q~~GRagR~g~~~--~~~~~~~~~d~~~~~~~~~~ 376 (498)
.+..+|+||+|||||.|..| .+++++...|...++.+.+.
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 79999999999999988775 47777777777776666554
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.9e-38 Score=366.21 Aligned_cols=328 Identities=19% Similarity=0.224 Sum_probs=239.1
Q ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHH-----cCC
Q 010884 35 GHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE-----KGI 103 (498)
Q Consensus 35 g~~~~~~~Q~~~i~~i~~g-~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~l~~-----~gi 103 (498)
+|..|+|+|.++++.++.+ ++++++||||||||++|.+|++. .++++|+++|+++|++|.++.+++ +|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 7899999999999999865 68999999999999999999864 357899999999999999999875 366
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHH
Q 010884 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (498)
.+..+.+......+ ... ..+++++|||.+.. ....+........+++|||||+|++.+. ..+.+..
T Consensus 1003 ~V~~ltGd~~~~~~--~~~-------~~~IiV~TPEkld~--llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le~ 1068 (1724)
T 4f92_B 1003 KVVLLTGETSTDLK--LLG-------KGNIIISTPEKWDI--LSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLEV 1068 (1724)
T ss_dssp CEEECCSCHHHHHH--HHH-------HCSEEEECHHHHHH--HHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHHH
T ss_pred EEEEEECCCCcchh--hcC-------CCCEEEECHHHHHH--HHhCcccccccceeeEEEeechhhcCCC---CCccHHH
Confidence 67766665432221 111 26788888886521 1111111122345899999999999763 3444443
Q ss_pred ----HHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEe-cCCCCCc-eEEEEEeecc--hhhHH----HHHH
Q 010884 184 ----LSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPN-LFYEVRYKDL--LDDAY----ADLC 250 (498)
Q Consensus 184 ----l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~n-i~~~v~~~~~--~~~~~----~~l~ 250 (498)
+..+.... +++++|+||||.++. .++.++++......+. .+..||. +...+..... ..... ..+.
T Consensus 1069 il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~ 1146 (1724)
T 4f92_B 1069 ICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVY 1146 (1724)
T ss_dssp HHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHH
Confidence 22223333 478999999999764 5778888876544432 2333443 3333322211 11111 1222
Q ss_pred HHH-HhcCCccEEEEeCccchHHHHHHHHHhC----------------------------------CCceEeecCCCCHH
Q 010884 251 SVL-KANGDTCAIVYCLERTTCDELSAYLSAG----------------------------------GISCAAYHAGLNDK 295 (498)
Q Consensus 251 ~~l-~~~~~~~~IVf~~t~~~~~~l~~~L~~~----------------------------------g~~~~~~h~~l~~~ 295 (498)
..+ +..+++++||||+|++.|+.+|..|... ...++.|||||++.
T Consensus 1147 ~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~ 1226 (1724)
T 4f92_B 1147 HAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPM 1226 (1724)
T ss_dssp HHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHH
T ss_pred HHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHH
Confidence 233 3345678999999999999988777431 12578999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE----------eCCCCCHHHHHHHHhhcCCCCC--CceEEEEEc
Q 010884 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (498)
Q Consensus 296 ~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~----------~~~p~s~~~y~Q~~GRagR~g~--~~~~~~~~~ 363 (498)
+|..+++.|++|.++|||||+++++|||+|.+++||. ...|.++.+|.||+|||||.|. .|.|++++.
T Consensus 1227 ~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1227 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEec
Confidence 9999999999999999999999999999999999983 3346799999999999999997 789999999
Q ss_pred cchHHHHHHHHHhcc
Q 010884 364 MDDRRRMEFILSKNQ 378 (498)
Q Consensus 364 ~~d~~~~~~~~~~~~ 378 (498)
..+...++.++....
T Consensus 1307 ~~~~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1307 GSKKDFFKKFLYEPL 1321 (1724)
T ss_dssp GGGHHHHHHHTTSCB
T ss_pred chHHHHHHHHhCCCC
Confidence 999888888876544
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.4e-39 Score=343.36 Aligned_cols=301 Identities=13% Similarity=0.074 Sum_probs=219.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCC----ceeEec
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi----~~~~~~ 109 (498)
+|||+|.++++.++.++++++++|||+|||++|++++.. ..+++|||+|+++|+.|+.+.+++++. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999988764 345999999999999999999998633 345555
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (498)
++...... .....+++++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~-------~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhchh-------hhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 54332221 12347899999997665421 1223489999999999875 23444555
Q ss_pred hC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecC--------CCCCceEEEEEeec-----------chh------
Q 010884 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKD-----------LLD------ 243 (498)
Q Consensus 190 ~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------~~r~ni~~~v~~~~-----------~~~------ 243 (498)
.+ +..++++||||++..... ......+..+.++..+ ...+.....+.... ...
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 55 577899999999655322 1111111122222111 11111111111100 000
Q ss_pred ----hHHHHHHHHHHhc---CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEe-
Q 010884 244 ----DAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (498)
Q Consensus 244 ----~~~~~l~~~l~~~---~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT- 315 (498)
.+...+.+++... ++.++||||+ ++.++.+++.|.+.+..+..+||+++.++|..+++.|.+|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 1222344444433 4566777777 888999999999998899999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
+++++|||+|++++||++++|.|+..|+|++||+||.|+.+.++++|+..
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEee
Confidence 99999999999999999999999999999999999999888666776643
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.2e-39 Score=335.70 Aligned_cols=284 Identities=13% Similarity=0.091 Sum_probs=204.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 010884 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (498)
Q Consensus 35 g~~~~~~~Q~~~i~~i~~g~dv-lv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (498)
|+.+++|.|+ +|+.++.++++ ++.+|||+|||++|++|++. .++++||++|+++|+.|+.+.+... ......
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 7889999985 79999999887 88999999999999999864 4678999999999999999988643 322222
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (498)
..... ...+...+.++|+..+ ...+........+++|||||||++ +++ +......+ ..+.
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~l-----~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~ 137 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHATF-----TTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRV 137 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHHH-----HHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHH
T ss_pred ccccc-----------cCCCCceEEEEChHHH-----HHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhh
Confidence 11100 1122344555554433 333444445667999999999987 222 22222222 2233
Q ss_pred hCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccc
Q 010884 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269 (498)
Q Consensus 190 ~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~ 269 (498)
..++.++++||||+++.... +...++.++......|... +..+..++... .+++||||+|++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~-----~~~~~~~~~~~~~~~p~~~------------~~~~~~~l~~~-~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPERS------------WNTGFDWITDY-QGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCSSC------------CSSSCHHHHHC-CSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchh-----hhcCCCceEecCccCCchh------------hHHHHHHHHhC-CCCEEEEcCCHH
Confidence 45689999999999875432 1122222222111111110 01122333343 458999999999
Q ss_pred hHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeC---------------
Q 010884 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--------------- 334 (498)
Q Consensus 270 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~--------------- 334 (498)
.++.+++.|.+.|+.+..+||++. ..+++.|++|+.+|||||+++++|||+|+ ++||+|+
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHHhhcCCCCC-CceEEEEEcc
Q 010884 335 -----IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (498)
Q Consensus 335 -----~p~s~~~y~Q~~GRagR~g~-~~~~~~~~~~ 364 (498)
.|.|.++|+||+|||||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888753
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.3e-39 Score=336.23 Aligned_cols=288 Identities=18% Similarity=0.178 Sum_probs=217.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eeEecCCCCHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (498)
+|+|+|.+++++++.++++++.+|||+|||++|+.++....+.+||++|+++|+.||.+++.++++. +..++++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 5899999999999999999999999999999999998888899999999999999999999999988 7777765431
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCE
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 196 (498)
..+++++||+.+.... ... ...+++|||||||++...+ |+ . +...++..++
T Consensus 171 -------------~~~Ivv~T~~~l~~~~-----~~~--~~~~~liIvDEaH~~~~~~--~~----~---~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAYVNA-----EKL--GNRFMLLIFDEVHHLPAES--YV----Q---IAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHHHHTH-----HHH--TTTCSEEEEETGGGTTSTT--TH----H---HHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHHHHHH-----HHh--cCCCCEEEEECCcCCCChH--HH----H---HHHhcCCCeE
Confidence 2578888877654321 111 1348999999999998754 43 2 4556678889
Q ss_pred EEEeecCChHHHH--HHHHHhC---------------CCCCeEE--ecCCC-------------------CCceE-----
Q 010884 197 LALTATAAPKVQK--DVMESLC---------------LQNPLVL--KSSFN-------------------RPNLF----- 233 (498)
Q Consensus 197 l~lSAT~~~~~~~--~i~~~l~---------------~~~~~~~--~~~~~-------------------r~ni~----- 233 (498)
++||||+...... .+...++ +..+... ..... ..++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999732100 0111110 1111110 00000 00000
Q ss_pred -EE-E-E----e----------------ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecC
Q 010884 234 -YE-V-R----Y----------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (498)
Q Consensus 234 -~~-v-~----~----------------~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~ 290 (498)
+. . . . ......+...+.++++...+.++||||++++.++.+++.|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 00 0 0 0 00012456777888888778899999999999999999983 678999
Q ss_pred CCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC-ceEEEE
Q 010884 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (498)
Q Consensus 291 ~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~-~~~~~~ 361 (498)
+++..+|..++++|++|+++|||||+++++|+|+|++++||++++|+|+..|+|++||+||.|+. +.+++|
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999965 455543
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-38 Score=369.71 Aligned_cols=337 Identities=19% Similarity=0.222 Sum_probs=239.7
Q ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHhHhc--------------CCCeEEEeCcHH
Q 010884 25 ALVKLLRWHF-GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSPLI 88 (498)
Q Consensus 25 ~~~~~l~~~f-g~~~~~~~Q~~~i~~i~~-g~dvlv~apTG~GKTl~~~l~~l~--------------~~~~~lvl~P~~ 88 (498)
++....+..| ||.+|+++|.++++.++. +++++++||||+|||++|.++++. .+.++|+++|++
T Consensus 65 ~Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~k 144 (1724)
T 4f92_B 65 KLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMR 144 (1724)
T ss_dssp TSCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSH
T ss_pred hcCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHH
Confidence 3444555667 799999999999998875 679999999999999999999863 245799999999
Q ss_pred HHHHHHHHHHHH----cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEE
Q 010884 89 ALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (498)
Q Consensus 89 ~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (498)
||++|+++.|++ +|+.+..+.++...... . ....+|+++|||.+.. .............+++|||
T Consensus 145 ALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~-----~----~~~~~IlVtTpEkld~--llr~~~~~~~l~~v~~vIi 213 (1724)
T 4f92_B 145 SLVQEMVGSFGKRLATYGITVAELTGDHQLCKE-----E----ISATQIIVCTPEKWDI--ITRKGGERTYTQLVRLIIL 213 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT-----T----GGGCSEEEECHHHHHH--HTTSSTTHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc-----c----cCCCCEEEECHHHHHH--HHcCCccchhhcCcCEEEE
Confidence 999999999876 57888877766543211 0 1237899999996421 0000001112345899999
Q ss_pred eccccccccCCCChHHH-HH-HHHH----HHhCCCCCEEEEeecCChHHHHHHHHHhCCCCC--eEEecCCCCC-ceEEE
Q 010884 165 DEAHCISSWGHDFRPSY-RK-LSSL----RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRP-NLFYE 235 (498)
Q Consensus 165 DEaH~i~~~g~~fr~~~-~~-l~~l----~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~~r~-ni~~~ 235 (498)
||+|.+.+ -|... .. +.++ ....+++++|+||||.++. .++.++|+...+ ..+..+..|| .+...
T Consensus 214 DEvH~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~ 287 (1724)
T 4f92_B 214 DEIHLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQT 287 (1724)
T ss_dssp TTGGGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEE
T ss_pred ecchhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEE
Confidence 99999864 24332 22 2222 2234688999999999763 467777765422 2222233344 23222
Q ss_pred EEee--cchhhHHHHHH----HHHHh-cCCccEEEEeCccchHHHHHHHHHhC---------------------------
Q 010884 236 VRYK--DLLDDAYADLC----SVLKA-NGDTCAIVYCLERTTCDELSAYLSAG--------------------------- 281 (498)
Q Consensus 236 v~~~--~~~~~~~~~l~----~~l~~-~~~~~~IVf~~t~~~~~~l~~~L~~~--------------------------- 281 (498)
+... .........+. ..+.. ..++++||||+||+.|+.+|+.|.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1724)
T 4f92_B 288 YVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQ 367 (1724)
T ss_dssp CCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSC
T ss_pred EeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcc
Confidence 2111 11112222222 22222 34578999999999999999888631
Q ss_pred ----------CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE----eC------CCCCHHH
Q 010884 282 ----------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSMEA 341 (498)
Q Consensus 282 ----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~----~~------~p~s~~~ 341 (498)
...++++||||+.++|..+.+.|++|.++|||||+++++|||+|.+++||+ |+ .|-++.+
T Consensus 368 ~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~ 447 (1724)
T 4f92_B 368 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 447 (1724)
T ss_dssp CSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHH
T ss_pred cccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHH
Confidence 124789999999999999999999999999999999999999999999996 44 3568999
Q ss_pred HHHHHhhcCCCCC--CceEEEEEccchHHHHHHHHHhcc
Q 010884 342 FYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 342 y~Q~~GRagR~g~--~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
|.||+|||||.|. .|.++++.+..+......++....
T Consensus 448 ~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~ 486 (1724)
T 4f92_B 448 ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQL 486 (1724)
T ss_dssp HHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCS
T ss_pred HHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCC
Confidence 9999999999875 788999999988887777766543
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.2e-39 Score=348.03 Aligned_cols=285 Identities=13% Similarity=0.080 Sum_probs=201.0
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcC
Q 010884 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (498)
Q Consensus 38 ~~~~~Q~-----~~i~~i~------~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~g 102 (498)
.++|+|+ ++|+.++ .+++++++||||+|||++|++|++. .+.++||++||++|+.|+.+.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 7899999 9999888 8999999999999999999988874 45789999999999999999998765
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECccccc---Chh-hHHHHHhhhhcCCccEEEEeccccccccCCCCh
Q 010884 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (498)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~---t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (498)
+.. .... .. .+.||..+. +.+ +...+........+++|||||||++. ..+.
T Consensus 295 i~~--~~~~-------------------l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VRY--LTPA-------------------VQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CEE--CCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred eee--eccc-------------------cc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 431 1100 00 034444221 222 22233333346779999999999982 1122
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCC
Q 010884 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (498)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (498)
..+..+..+.. .++.++++||||+++.+.. ......+... +..... ......+...+.. .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~----------v~~~~~---~~~~~~~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVHD----------VSSEIP---DRAWSSGFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEE----------EECCCC---SSCCSSCCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceEE----------EeeecC---HHHHHHHHHHHHh-CC
Confidence 22233333322 2578999999999876321 0000111110 000000 0111112233333 36
Q ss_pred ccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE------
Q 010884 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~------ 332 (498)
+++||||++++.++.+++.|.+.|+.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 789999999999999999999999999999993 789999999999999999999999999999 999998
Q ss_pred --------------eCCCCCHHHHHHHHhhcCCC-CCCceEEEEE---ccchHHHHH
Q 010884 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRME 371 (498)
Q Consensus 333 --------------~~~p~s~~~y~Q~~GRagR~-g~~~~~~~~~---~~~d~~~~~ 371 (498)
|++|.+.++|+||+||+||. |+.|.|++|+ ++.|...++
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~ 542 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAH 542 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHH
Confidence 56899999999999999999 7899999996 455544333
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.5e-39 Score=331.29 Aligned_cols=277 Identities=13% Similarity=0.111 Sum_probs=189.1
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHH
Q 010884 49 AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (498)
Q Consensus 49 ~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~ 124 (498)
++++|+++++++|||+|||++|++|++. .+..++|++||++|+.|+.+.++.+++. .....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~------------- 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQA------------- 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSC-------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eeccc-------------
Confidence 3567899999999999999999988874 4568999999999999999998865432 11100
Q ss_pred hcCCCcccEEEECccccc---Chh-hHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEe
Q 010884 125 DSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (498)
Q Consensus 125 ~~~~~~~~~l~~tpe~v~---t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lS 200 (498)
.. .++||..+. +.+ +...+........+++|||||||++ + ..|...+..+..+.. .++.++++||
T Consensus 69 ------~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 69 ------FS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp ------CC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred ------ce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHhc-cCCceEEEEe
Confidence 00 245554332 111 2222333333567999999999998 2 223333333333332 3578999999
Q ss_pred ecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHh
Q 010884 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (498)
Q Consensus 201 AT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~ 280 (498)
||+++.+.. ......+..... .... ......+...+.+. ++++||||++++.++.+++.|++
T Consensus 138 AT~~~~~~~----~~~~~~~~~~~~----------~~~~---~~~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 138 ATPPGTSDE----FPHSNGEIEDVQ----------TDIP---SEPWNTGHDWILAD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp SSCTTCCCS----SCCCSSCEEEEE----------CCCC---SSCCSSSCHHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCchhhh----hhhcCCCeeEee----------eccC---hHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 999876432 111111111100 0000 00111122333333 56899999999999999999999
Q ss_pred CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE-------------------eCCCCCHHH
Q 010884 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEA 341 (498)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~-------------------~~~p~s~~~ 341 (498)
.|+.+..+|| ++|..+++.|++|+++|||||+++++|||+| +++||| ++.|.+.++
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688999999999999999999999999999 999997 889999999
Q ss_pred HHHHHhhcCCC-CCCceEEEEE---ccchHHHHHHHH
Q 010884 342 FYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFIL 374 (498)
Q Consensus 342 y~Q~~GRagR~-g~~~~~~~~~---~~~d~~~~~~~~ 374 (498)
|+||+||+||. |++|.|++|+ ++.|...++.+.
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~ 311 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLE 311 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhh
Confidence 99999999998 6899999997 566655555443
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.6e-38 Score=339.31 Aligned_cols=306 Identities=13% Similarity=0.090 Sum_probs=211.3
Q ss_pred hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHH
Q 010884 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIG 97 (498)
Q Consensus 22 ~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~ 97 (498)
.++.+.+.|.. ....++|.|+.+++.+++++++++.||||+|||++|++|++. .+.++||++||++|+.|+.+.
T Consensus 157 ~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~ 234 (618)
T 2whx_A 157 KSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEA 234 (618)
T ss_dssp -----CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred chHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHH
Confidence 44444444433 146677888778999999999999999999999999998874 466899999999999999988
Q ss_pred HHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChh-hHHHHHhhhhcCCccEEEEeccccccccCCC
Q 010884 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (498)
Q Consensus 98 l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (498)
++... +.+...... ....+...+.++ +.+ +...+........+++|||||||++ +. .
T Consensus 235 l~~~~--v~~~~~~l~-----------~~~tp~~~i~~~------t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~--~ 292 (618)
T 2whx_A 235 LRGLP--IRYQTPAVK-----------SDHTGREIVDLM------CHATFTTRLLSSTRVPNYNLIVMDEAHFT-DP--C 292 (618)
T ss_dssp TTTSC--EEECCTTSS-----------CCCCSSSCEEEE------EHHHHHHHHHHCSSCCCCSEEEEESTTCC-SH--H
T ss_pred hcCCc--eeEecccce-----------eccCCCceEEEE------ChHHHHHHHhccccccCCeEEEEECCCCC-Cc--c
Confidence 87432 221111000 011111222222 333 2223333344677999999999998 32 2
Q ss_pred ChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhc
Q 010884 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256 (498)
Q Consensus 177 fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~ 256 (498)
|...+..+..... .++.++++||||++..+.. +...++..+......+. ..+..+...+.+.
T Consensus 293 ~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~-----~~~~~~~~~~v~~~~~~------------~~~~~ll~~l~~~ 354 (618)
T 2whx_A 293 SVAARGYISTRVE-MGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPE------------RSWNTGFDWITDY 354 (618)
T ss_dssp HHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCS------------SCCSSSCHHHHHC
T ss_pred HHHHHHHHHHHhc-ccCccEEEEECCCchhhhh-----hhccCCceeeecccCCH------------HHHHHHHHHHHhC
Confidence 4444444443332 1689999999999876431 11122222211111110 1111223334333
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEE------
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV------ 330 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~V------ 330 (498)
.+++||||+|++.++.+++.|.+.|+.+..+||+ +|..+++.|++|+.+|||||+++++|||+| |++|
T Consensus 355 -~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 355 -QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp -CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred -CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 5689999999999999999999999999999984 788899999999999999999999999997 9888
Q ss_pred --------------EEeCCCCCHHHHHHHHhhcCCCCC-CceEEEEEc---cchHHHHHHHHH
Q 010884 331 --------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFILS 375 (498)
Q Consensus 331 --------------I~~~~p~s~~~y~Q~~GRagR~g~-~~~~~~~~~---~~d~~~~~~~~~ 375 (498)
|+++.|.|.++|+||+||+||.|. +|.|++|++ +.|...++.+.+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 777889999999999999999965 899999997 666655554443
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.8e-35 Score=312.77 Aligned_cols=325 Identities=17% Similarity=0.134 Sum_probs=238.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----c
Q 010884 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----K 101 (498)
Q Consensus 29 ~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~----~ 101 (498)
+.++.+|+ .++|.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+|++.|+.|..+.+.. +
T Consensus 103 a~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 103 AAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 45567899 79999999999999998 99999999999999999963 467899999999999888777665 6
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH---HhhhhcCCccEEEEecccccc-ccC---
Q 010884 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWG--- 174 (498)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g--- 174 (498)
|+.+..+.++.....+...+. .+|+|+||-.+.-..+...+ ........+.++||||||.|+ +.+
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~--------~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYN--------ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred CCeEEEEeCCCCHHHHHHhcC--------CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 899999888887665544331 57877777655311111111 112335668999999999987 322
Q ss_pred -------CCChHHHHHHHHHHHhCC----------CCCEE-----------------EEeecCCh---HHHHHHHHH-hC
Q 010884 175 -------HDFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVMES-LC 216 (498)
Q Consensus 175 -------~~fr~~~~~l~~l~~~~~----------~~~~l-----------------~lSAT~~~---~~~~~i~~~-l~ 216 (498)
.+-...|..+..+...+| ..+++ ++|||.+. .+...+... +.
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~ 331 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELF 331 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHC
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHh
Confidence 111345667777777775 45566 77888764 222111111 10
Q ss_pred CCC-------Ce--------------------------------------------------------------------
Q 010884 217 LQN-------PL-------------------------------------------------------------------- 221 (498)
Q Consensus 217 ~~~-------~~-------------------------------------------------------------------- 221 (498)
..+ ..
T Consensus 332 ~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~E 411 (922)
T 1nkt_A 332 SRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAE 411 (922)
T ss_dssp CBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHH
Confidence 000 00
Q ss_pred --------EEecCCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEee
Q 010884 222 --------VLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (498)
Q Consensus 222 --------~~~~~~~r~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~ 288 (498)
++..+.++|..... +.+. ....|+..|...+.. ..+.++||||+|++.++.|+..|.+.|+++..+
T Consensus 412 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vL 490 (922)
T 1nkt_A 412 LHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL 490 (922)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 11112222322211 1122 235678888777754 246789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCc-----------------------------------------
Q 010884 289 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV----------------------------------------- 327 (498)
Q Consensus 289 h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v----------------------------------------- 327 (498)
||++.+.++..+.++|+.| .|+|||+++|+|+|++.+
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 568 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999888888888888877 599999999999999975
Q ss_pred -----------cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 328 -----------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 328 -----------~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
.+||+++.|.|...|.|++||+||.|.+|.++.|++.+|.
T Consensus 569 ~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 569 KEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.1e-36 Score=319.92 Aligned_cols=323 Identities=18% Similarity=0.140 Sum_probs=217.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (498)
.+-++.+|. .++|.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++|++||++|+.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 344556786 68999999999999998 99999999999999999873 466899999999999988887766
Q ss_pred cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHH---HhhhhcCCccEEEEecccccc-ccCCC
Q 010884 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD 176 (498)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~~ 176 (498)
+|+.+..+.++.....+...+ ..+|+|+||-.+.-..+...+ ........+.++||||||.++ +.|..
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY--------AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 589998888887765443322 156766665543211111111 012334679999999999998 44310
Q ss_pred ----------ChHHHHHHHHHHHhCC---------------------CCCEE------------------------EEee
Q 010884 177 ----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------ALTA 201 (498)
Q Consensus 177 ----------fr~~~~~l~~l~~~~~---------------------~~~~l------------------------~lSA 201 (498)
--..|..+..+...+| ..+++ ++||
T Consensus 214 pLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsa 293 (853)
T 2fsf_A 214 PLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293 (853)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCc
Confidence 0012333333333332 22322 6777
Q ss_pred cCCh---HHHHH--------------------------------------------------------------------
Q 010884 202 TAAP---KVQKD-------------------------------------------------------------------- 210 (498)
Q Consensus 202 T~~~---~~~~~-------------------------------------------------------------------- 210 (498)
|.+. .+...
T Consensus 294 t~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 7542 11000
Q ss_pred -------------------HHHHhCCCCCeEEecCCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEeC
Q 010884 211 -------------------VMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCL 266 (498)
Q Consensus 211 -------------------i~~~l~~~~~~~~~~~~~r~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~ 266 (498)
+.+..+ ..++..+.++|..... +.+. ....|+..|.+.+.. ..+.++||||+
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~---l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYK---LDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHC---CEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhC---CcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 000000 0011122333333221 1122 235788888887754 35678999999
Q ss_pred ccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCC--------------------
Q 010884 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------------------- 326 (498)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~-------------------- 326 (498)
|++.++.|+..|.+.|+++..+||++.+.++..+.++|+.| .|+|||+++|+|+|++.
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999999998888889888 59999999999999987
Q ss_pred ------------c-----cEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 327 ------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 327 ------------v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
| .+||+++.|.|...|.|++||+||.|.+|.++.|++.+|.
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 4 5999999999999999999999999999999999998773
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.5e-36 Score=321.89 Aligned_cols=305 Identities=17% Similarity=0.174 Sum_probs=194.8
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEcCCCchHHHHHHHhHh---c---------CCCeEEEeCcHHHHHHHHH-HHHH
Q 010884 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPAL---A---------KPGIVLVVSPLIALMENQV-IGLK 99 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~----g-~dvlv~apTG~GKTl~~~l~~l---~---------~~~~~lvl~P~~~L~~q~~-~~l~ 99 (498)
.+||+|.++++.++. + +++++++|||+|||++++..+. . ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998876 4 5689999999999998654432 1 4578999999999999999 7888
Q ss_pred HcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChH
Q 010884 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (498)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (498)
.++.....+.... .....+++++||+.+........+........+++|||||||++...+.
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~---- 319 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN---- 319 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch----
Confidence 8877655544221 1234789999999876532111112223345589999999999876431
Q ss_pred HHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE------ecCCCCCceEEEEEee--------------
Q 010884 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSSFNRPNLFYEVRYK-------------- 239 (498)
Q Consensus 180 ~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~~r~ni~~~v~~~-------------- 239 (498)
..+..+...+++.++++||||+...........++... ..+ ...+..+...+.+...
T Consensus 320 --~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 320 --SNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPI-YTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCS-EEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred --HHHHHHHHhCCcceEEEeccccccccchhHHHHcCCce-EecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 33445666778889999999998655444444433210 000 0011111111111110
Q ss_pred -------------cch----------hhHHHHHHHHHHh-cCCccEEEEeCccchHHHHHHHHHhCCC--------ceEe
Q 010884 240 -------------DLL----------DDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGI--------SCAA 287 (498)
Q Consensus 240 -------------~~~----------~~~~~~l~~~l~~-~~~~~~IVf~~t~~~~~~l~~~L~~~g~--------~~~~ 287 (498)
... ......+.++++. ...+++||||++++.|+.+++.|.+.+. .+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 0111233444443 3457899999999999999999987543 2678
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCe---EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCC--CceEEEEE
Q 010884 288 YHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLYY 362 (498)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~---vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~--~~~~~~~~ 362 (498)
+||+++. +|..++++|++|+.+ |||+|+++++|||+|++++||++++|.|+..|+|++||+||.+. .+..++++
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 8998764 799999999998766 88899999999999999999999999999999999999999875 34444455
Q ss_pred cc
Q 010884 363 GM 364 (498)
Q Consensus 363 ~~ 364 (498)
+.
T Consensus 556 D~ 557 (590)
T 3h1t_A 556 DY 557 (590)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.5e-36 Score=331.90 Aligned_cols=327 Identities=16% Similarity=0.146 Sum_probs=233.8
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHhHhc------C--CCeEEEe
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVV 84 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~-g~dvlv~apTG~GKTl~~~l~~l~------~--~~~~lvl 84 (498)
...|..+++++.+.+.++.. | ..|.+.|+++|..++. +++++++||||+|||+ ++|++. . +..++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 45688888999999999885 5 5677888888877665 5679999999999998 444432 1 4569999
Q ss_pred CcHHHHHHHHHHHHHH-cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEE
Q 010884 85 SPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (498)
Q Consensus 85 ~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (498)
+|+++|+.|+...+.. ++..+....+.... .. .......+++++||+.+.. .+........+++||
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~------~~--~~~~~~~~I~v~T~G~l~r-----~l~~~~~l~~~~~lI 213 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR------FE--NKTSNKTILKYMTDGMLLR-----EAMEDHDLSRYSCII 213 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEET------TE--EECCTTCSEEEEEHHHHHH-----HHHHSTTCTTEEEEE
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceec------cc--cccCCCCCEEEECHHHHHH-----HHhhCccccCCCEEE
Confidence 9999999999887755 44332211111000 00 0112246677777664422 222333466799999
Q ss_pred Eecccc-ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecc-
Q 010884 164 IDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL- 241 (498)
Q Consensus 164 iDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~- 241 (498)
|||+|. ..+ ....+..+..+....++.+++++|||++... +...++ ..+.+...+.. ..+...+.....
T Consensus 214 lDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~---l~~~~~-~~~vi~v~gr~-~pv~~~~~~~~~~ 284 (773)
T 2xau_A 214 LDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAEK---FQRYFN-DAPLLAVPGRT-YPVELYYTPEFQR 284 (773)
T ss_dssp ECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCHH---HHHHTT-SCCEEECCCCC-CCEEEECCSSCCS
T ss_pred ecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHHH---HHHHhc-CCCcccccCcc-cceEEEEecCCch
Confidence 999996 322 1112334555666678899999999997643 333332 23333322222 222222211111
Q ss_pred --hhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHh-----------CCCceEeecCCCCHHHHHHHHHHHH---
Q 010884 242 --LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI--- 305 (498)
Q Consensus 242 --~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~-----------~g~~~~~~h~~l~~~~R~~~~~~f~--- 305 (498)
....+..+..++....++++||||++++.++.+++.|.+ .++.+..+||+|++++|..+++.|.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 122344455555555678999999999999999999985 5788999999999999999999999
Q ss_pred --cCCCeEEEEeCccccccccCCccEEEEeCC------------------CCCHHHHHHHHhhcCCCCCCceEEEEEccc
Q 010884 306 --SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (498)
Q Consensus 306 --~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~ 365 (498)
+|..+|||||+++++|||+|+|++||++++ |.|.++|+||+|||||. .+|.|+.+|++.
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 88999999999999999 799999999887
Q ss_pred hH
Q 010884 366 DR 367 (498)
Q Consensus 366 d~ 367 (498)
+.
T Consensus 444 ~~ 445 (773)
T 2xau_A 444 AF 445 (773)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=9.2e-38 Score=324.06 Aligned_cols=269 Identities=14% Similarity=0.120 Sum_probs=186.8
Q ss_pred HHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHH
Q 010884 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (498)
Q Consensus 47 i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 122 (498)
...+..++++++.||||+|||++|++|++. .+.++||++|+++|+.|+.+.++.. ............
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~------- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQRE------- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC-------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccC-------
Confidence 344567889999999999999999999875 5678999999999999999998743 332222111000
Q ss_pred HHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccc-----cccCCCChHHHHHHHHHHHhCCCCCEE
Q 010884 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (498)
Q Consensus 123 ~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i-----~~~g~~fr~~~~~l~~l~~~~~~~~~l 197 (498)
..+...+.++|.. .+...+........+++|||||||+. ..+| .+.. +...++.+++
T Consensus 86 ----~t~~~~i~~~~~~-----~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~~-~~~~~~~~~i 147 (459)
T 2z83_A 86 ----HQGNEIVDVMCHA-----TLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIAT-KVELGEAAAI 147 (459)
T ss_dssp ------CCCSEEEEEHH-----HHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHHH-HHHTTSCEEE
T ss_pred ----CCCCcEEEEEchH-----HHHHHhhccccccCCcEEEEECCccCCchhhHHHH--------HHHH-HhccCCccEE
Confidence 0112223222222 13333444445667999999999984 3322 1111 2234689999
Q ss_pred EEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHH
Q 010884 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277 (498)
Q Consensus 198 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~ 277 (498)
+||||++..+.. ......|...... ......+..+..++... .+++||||++++.++.+++.
T Consensus 148 l~SAT~~~~~~~----~~~~~~pi~~~~~-------------~~~~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 148 FMTATPPGTTDP----FPDSNAPIHDLQD-------------EIPDRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp EECSSCTTCCCS----SCCCSSCEEEEEC-------------CCCSSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHH
T ss_pred EEEcCCCcchhh----hccCCCCeEEecc-------------cCCcchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHH
Confidence 999999865321 1111222221110 00001111122334444 56899999999999999999
Q ss_pred HHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEE--------------------eCCCC
Q 010884 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPK 337 (498)
Q Consensus 278 L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~--------------------~~~p~ 337 (498)
|.+.|+.+..+||. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6888999999999999999999999999999 99999 77999
Q ss_pred CHHHHHHHHhhcCCCCC-CceEEEEEccc
Q 010884 338 SMEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (498)
Q Consensus 338 s~~~y~Q~~GRagR~g~-~~~~~~~~~~~ 365 (498)
|..+|+||+|||||.|. +|.+++|+...
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 99999999875
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.6e-37 Score=328.96 Aligned_cols=278 Identities=22% Similarity=0.212 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecCCCCHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (498)
.+++.|+++++.+..+++++++||||+|||++|.+|++.++.++||++|+++|+.|..+.+.+ ++.......+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 356778888888888899999999999999999999999888999999999999999988765 5665555444322
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCE
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 196 (498)
.....+++++||+.+.. ........+++|||||||++.. +|++.+..+.......+...+
T Consensus 294 ----------~~~~~~IlV~TPGrLl~-------~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 294 ----------ITTGAPVTYSTYGKFLA-------DGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp ----------ECCCCSEEEEEHHHHHH-------TTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEE
T ss_pred ----------ccCCCCEEEECcHHHHh-------CCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceE
Confidence 12347888888876521 1123345699999999998653 355555554444333333347
Q ss_pred EEEeecCChHHHHHHHHHhCCCCCeEE--ecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHH
Q 010884 197 LALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDEL 274 (498)
Q Consensus 197 l~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l 274 (498)
+++|||++..+ ....+.+. ...+... +.+. .... . +.....+++||||+|++.++.+
T Consensus 354 il~SAT~~~~i--------~~~~p~i~~v~~~~~~~-i~~~--~~~~--~--------l~~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 354 VLATATPPGSV--------TVPHPNIEEVALSNTGE-IPFY--GKAI--P--------IEAIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp EEEESSCTTCC--------CCCCTTEEEEECBSCSS-EEET--TEEE--C--------GGGSSSSEEEEECSCHHHHHHH
T ss_pred EEECCCCCccc--------ccCCcceEEEeecccch-hHHH--Hhhh--h--------hhhccCCcEEEEeCCHHHHHHH
Confidence 88899998742 12222211 1111111 1110 0000 0 1223567899999999999999
Q ss_pred HHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEE----------EeC----------
Q 010884 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN---------- 334 (498)
Q Consensus 275 ~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI----------~~~---------- 334 (498)
++.|++.|+.+..+||++++++ |.++..+|||||+++++|||+| |++|| |||
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 9999999999999999999875 4556679999999999999996 99999 566
Q ss_pred -CCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHH
Q 010884 335 -IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (498)
Q Consensus 335 -~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~ 369 (498)
+|.+.++|+||+||+|| |++|. +.||++.|...
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 99998876543
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.3e-36 Score=312.79 Aligned_cols=267 Identities=15% Similarity=0.105 Sum_probs=182.0
Q ss_pred cCCCEEEEcCCCchHHHHHHHhHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcC
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~~l----~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (498)
+|+++++++|||+|||++|++|++ ..+.+++|++||++|+.|+.+.+. +..+....+... .. .
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~---------~~--~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQ---------SE--R 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCcc---------cc--C
Confidence 478999999999999999988887 456799999999999999888886 444444332211 01 1
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 128 ~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
.+...+.+++... +...+........+++|||||||++..+ +......+..+. ..++.++++||||+++..
T Consensus 68 ~~~~~~~~~~~~~-----l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 68 TGNEIVDFMCHST-----FTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -CCCSEEEEEHHH-----HHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCC
T ss_pred CCCceEEEEchHH-----HHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcch
Confidence 1112232222222 2233333344677999999999997432 222222333322 236899999999998742
Q ss_pred HHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEe
Q 010884 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (498)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~ 287 (498)
.. +... ++.+....... ....+..+..++... ++++||||++++.++.+++.|++.|+.+..
T Consensus 139 ~~-----~~~~----------~~~i~~~~~~~--~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 139 EA-----FPPS----------NSPIIDEETRI--PDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CS-----SCCC----------SSCCEEEECCC--CSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hh-----hcCC----------CCceeeccccC--CHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 11 1111 11111100000 011122233445444 467999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccE-----------------EEEeCCCCCHHHHHHHHhhcC
Q 010884 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRAG 350 (498)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~-----------------VI~~~~p~s~~~y~Q~~GRag 350 (498)
+||+ +|..+++.|++|+++|||||+++++|||+| +.. ||+++.|.+.++|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 688899999999999999999
Q ss_pred CCCCCceEEEEEc
Q 010884 351 RDQLPSKSLLYYG 363 (498)
Q Consensus 351 R~g~~~~~~~~~~ 363 (498)
|.|..+.++++|.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9996555555554
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6e-35 Score=327.23 Aligned_cols=316 Identities=16% Similarity=0.173 Sum_probs=226.8
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHh---cC--CCeEEEeCcHHHHHHHHHHHH-HHcCCceeEe
Q 010884 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGL-KEKGIAGEFL 108 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l---~~--~~~~lvl~P~~~L~~q~~~~l-~~~gi~~~~~ 108 (498)
.+++|+|.+++..++.. ..+++.++||+|||++++..+. .. .+++|||+|+ +|+.||...+ +.+++++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 36899999999998864 4789999999999998765553 22 3489999999 9999999999 4577777666
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccCh-hhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (498)
.+.... .............+++++|++.+... .....+. ...+++|||||||++..++......|..+..+
T Consensus 231 ~~~~~~----~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~----~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 231 DDERYA----EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC----EAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp CHHHHH----HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH----TSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred ccchhh----hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhh----hcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 433211 11111112223478999999987543 2222232 33589999999999987766555567777766
Q ss_pred HHhCCCCCEEEEeecCChHHHHHHHHHhCCCC------------------------------------------------
Q 010884 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQN------------------------------------------------ 219 (498)
Q Consensus 188 ~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~------------------------------------------------ 219 (498)
... ...+++|||||.+....++...+.+..
T Consensus 303 ~~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 303 AEH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HTT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred hhc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 543 345899999985421111111000000
Q ss_pred ----------------------------------CeEEec------CCCCCce-EEEEE---------------------
Q 010884 220 ----------------------------------PLVLKS------SFNRPNL-FYEVR--------------------- 237 (498)
Q Consensus 220 ----------------------------------~~~~~~------~~~r~ni-~~~v~--------------------- 237 (498)
...+.. .+..... .+.+.
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 000000 0000000 00000
Q ss_pred ----------------------eecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHh-CCCceEeecCCCCH
Q 010884 238 ----------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLND 294 (498)
Q Consensus 238 ----------------------~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~-~g~~~~~~h~~l~~ 294 (498)
.......|...+.++++..++.++||||+++..++.++..|.+ .|+++..+||+|+.
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 0011134677888888887788999999999999999999995 69999999999999
Q ss_pred HHHHHHHHHHHcCC--CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEc
Q 010884 295 KARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (498)
Q Consensus 295 ~~R~~~~~~f~~g~--~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~ 363 (498)
.+|..+++.|++|+ ++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+.+.+++++.
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999998 9999999999999999999999999999999999999999999999987666643
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.2e-34 Score=310.54 Aligned_cols=289 Identities=16% Similarity=0.214 Sum_probs=204.8
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcC
Q 010884 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (498)
Q Consensus 48 ~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (498)
...+++++++++||||+|||+ ..+..+...+..+|++|+++|+.|+.+.+++.|+.+..+.++... .....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~Tp 220 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPN 220 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTT
T ss_pred HHhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCC
Confidence 344678899999999999998 444445445667999999999999999999999998887765432 00000
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChH
Q 010884 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPK 206 (498)
Q Consensus 128 ~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~ 206 (498)
....+++.+|+|.+.. ...++++||||||++.+.+ |...+..+ +.... ++++++++|||. .
T Consensus 221 Gr~~~il~~T~e~~~l------------~~~v~lvVIDEaH~l~d~~--~g~~~~~~--l~~l~~~~i~il~~SAT~--~ 282 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSV------------TTPYEVAVIDEIQMIRDPA--RGWAWTRA--LLGLCAEEVHLCGEPAAI--D 282 (677)
T ss_dssp CCCCSEEEEEGGGCCS------------SSCEEEEEECSGGGGGCTT--THHHHHHH--HHHCCEEEEEEEECGGGH--H
T ss_pred CcccceeEecHhHhhh------------cccCCEEEEecceecCCcc--chHHHHHH--HHccCccceEEEeccchH--H
Confidence 1125677777765531 2347999999999998754 55444432 22222 367888888883 3
Q ss_pred HHHHHHHHhCCCCCeEEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceE
Q 010884 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (498)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~ 286 (498)
....+....+ ....+. .+.+..- ..+.... + ..+... ....||||+|++.++.+++.|.+.|+.+.
T Consensus 283 ~i~~l~~~~~--~~~~v~-~~~r~~~-l~~~~~~-----l----~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~ 348 (677)
T 3rc3_A 283 LVMELMYTTG--EEVEVR-DYKRLTP-ISVLDHA-----L----ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESA 348 (677)
T ss_dssp HHHHHHHHHT--CCEEEE-ECCCSSC-EEECSSC-----C----CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhcC--CceEEE-Eeeecch-HHHHHHH-----H----HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCee
Confidence 3344444332 222222 1222211 1111110 0 011122 23458999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHHc--CCCeEEEEeCccccccccCCccEEEEeCC--------------CCCHHHHHHHHhhcC
Q 010884 287 AYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRAG 350 (498)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~--g~~~vlvaT~a~~~GiD~p~v~~VI~~~~--------------p~s~~~y~Q~~GRag 350 (498)
.+||+|++++|..+++.|++ |+++|||||+++++|||+ +|++||++++ |.|..+|+||+||||
T Consensus 349 ~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 349 VIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAG 427 (677)
T ss_dssp EECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBT
T ss_pred eeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCC
Confidence 99999999999999999999 889999999999999999 9999999999 779999999999999
Q ss_pred CCCCC---ceEEEEEccchHHHHHHHHHhccc
Q 010884 351 RDQLP---SKSLLYYGMDDRRRMEFILSKNQS 379 (498)
Q Consensus 351 R~g~~---~~~~~~~~~~d~~~~~~~~~~~~~ 379 (498)
|.|.. |.|+. +...+...++.++.....
T Consensus 428 R~g~~g~~G~v~~-l~~~d~~~~~~~~~~~~~ 458 (677)
T 3rc3_A 428 RFSSRFKEGEVTT-MNHEDLSLLKEILKRPVD 458 (677)
T ss_dssp CTTSSCSSEEEEE-SSTTHHHHHHHHHHSCCC
T ss_pred CCCCCCCCEEEEE-EecchHHHHHHHHhcCcc
Confidence 99965 54444 445566666666665443
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.6e-33 Score=293.54 Aligned_cols=299 Identities=15% Similarity=0.138 Sum_probs=209.5
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHhHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcC--Cce
Q 010884 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~l~~~g--i~~ 105 (498)
..|+|+|.++++.+. .++++++.++||+|||++++..+.. ..+++|||+| .+|+.||.++++++. ..+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 369999999998763 5789999999999999876543321 2468999999 578899999999974 344
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHH
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (498)
..+.+.... ......+++++|++.+..... + ....+++||+||||.+...+. ...
T Consensus 115 ~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~---l----~~~~~~~vIvDEaH~~kn~~~-------~~~ 169 (500)
T 1z63_A 115 AVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR---L----KEVEWKYIVIDEAQNIKNPQT-------KIF 169 (500)
T ss_dssp EECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH---H----HTCCEEEEEEETGGGGSCTTS-------HHH
T ss_pred EEEecCchh-----------ccccCCcEEEeeHHHHhccch---h----cCCCcCEEEEeCccccCCHhH-------HHH
Confidence 444433210 111247899999998766432 1 223589999999999976542 222
Q ss_pred HHHHhCCCCCEEEEeecCChHHHHHHHHHhCCC----------------------------------CCeEEecC-----
Q 010884 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSS----- 226 (498)
Q Consensus 186 ~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~----------------------------------~~~~~~~~----- 226 (498)
.....++...+++||||+......++...+.+- .+..++..
T Consensus 170 ~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 170 KAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp HHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHH
T ss_pred HHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccc
Confidence 333345666789999999765444443322211 12222211
Q ss_pred --CCCCceEEEEEeecch--------------------------------------------------------hhHHHH
Q 010884 227 --FNRPNLFYEVRYKDLL--------------------------------------------------------DDAYAD 248 (498)
Q Consensus 227 --~~r~ni~~~v~~~~~~--------------------------------------------------------~~~~~~ 248 (498)
...|............ ..|+..
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 1223322222221110 123334
Q ss_pred HHHHHHhc--CCccEEEEeCccchHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHHcC-CCe-EEEEeCccccccc
Q 010884 249 LCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGID 323 (498)
Q Consensus 249 l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-vlvaT~a~~~GiD 323 (498)
+.+++... .+.++||||+++..++.++..|.+. |+.+..+||+++.++|..++++|++| ..+ +|++|.++++|+|
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 44555432 5678999999999999999999985 99999999999999999999999988 555 7999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
+++++.||++++|+|+..|.|++||++|.|+...+.+|
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999999999999999999999998766544
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.3e-30 Score=272.17 Aligned_cols=322 Identities=18% Similarity=0.192 Sum_probs=229.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 010884 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (498)
Q Consensus 28 ~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~l~~---- 100 (498)
.+-++.+|.. +++.|.-..-.+..|+ +..|.||.|||+++.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 66 EAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 66 EAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp HHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 3446677876 5699988888888888 99999999999999999873 567799999999999988777665
Q ss_pred cCCceeEecCC--------------------------------------------------CCHHHHHHHHHHHhcCCCc
Q 010884 101 KGIAGEFLSST--------------------------------------------------QTMQVKTKIYEDLDSGKPS 130 (498)
Q Consensus 101 ~gi~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~ 130 (498)
+|+.+.++.+. .....+...+.
T Consensus 143 Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~-------- 214 (822)
T 3jux_A 143 LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL-------- 214 (822)
T ss_dssp TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH--------
T ss_pred hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc--------
Confidence 69998887762 11222222222
Q ss_pred ccEEEECcccccChhhHHHHH---hhhhcCCccEEEEecccccc-----------ccCCCChHHHHHHHH----------
Q 010884 131 LRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS-----------SWGHDFRPSYRKLSS---------- 186 (498)
Q Consensus 131 ~~~l~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~-----------~~g~~fr~~~~~l~~---------- 186 (498)
.+|.|+|.--+.-.-+...+. ...-...+.+.||||++.++ ....+-...|..+..
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~d 294 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKD 294 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTT
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCc
Confidence 467777755432211111110 11123458899999999763 111011111111111
Q ss_pred --------------------------------------------HHHh--CC----------------------------
Q 010884 187 --------------------------------------------LRNY--LP---------------------------- 192 (498)
Q Consensus 187 --------------------------------------------l~~~--~~---------------------------- 192 (498)
++.. +.
T Consensus 295 y~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 295 FTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 1110 00
Q ss_pred ----------------------------------CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEE--
Q 010884 193 ----------------------------------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV-- 236 (498)
Q Consensus 193 ----------------------------------~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v-- 236 (498)
-..+.+||||+..+. ..+.+.+++. ++..+.++|......
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~d 450 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHDD 450 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECCC
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecCc
Confidence 012899999998754 4556655543 455566777654433
Q ss_pred -EeecchhhHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEE
Q 010884 237 -RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (498)
Q Consensus 237 -~~~~~~~~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlv 313 (498)
.+. ....++..+.+.+... .+.++||||+|++.++.++..|.+.|+++..+||+..+.++..+.++++.| .|+|
T Consensus 451 ~vy~-t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 451 LVFR-TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp EEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred EEEe-cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 222 3457888888877652 467899999999999999999999999999999997777776666666666 5999
Q ss_pred EeCccccccccC--------CccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 314 ATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 314 aT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
||+++|+|+|++ ++.+||++++|.|...|.||+||+||.|.+|.++.|++.+|.
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999999998 556999999999999999999999999999999999998883
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=3.5e-30 Score=277.67 Aligned_cols=310 Identities=14% Similarity=0.141 Sum_probs=206.1
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEcCCCchHHHHHHHhHh---cC-------CCeEEEeCcHHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL---AK-------PGIVLVVSPLIALMENQVIGL 98 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~---------~g~dvlv~apTG~GKTl~~~l~~l---~~-------~~~~lvl~P~~~L~~q~~~~l 98 (498)
.+||+|.+++..+. .++.+|+..+||+|||+..+..+. .. .+++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999874 345789999999999987654332 11 2468999997 8889999999
Q ss_pred HHcC---CceeEecCCCCHHHHHHHHHHHhcC--CCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccccc
Q 010884 99 KEKG---IAGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (498)
Q Consensus 99 ~~~g---i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (498)
.++. +....+.++................ .....++++|++.+.. .........+++||+||||++...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~------~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRL------HAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH------HTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHh------hHHHhhcCCccEEEEECceecCCh
Confidence 8852 3344444433222222222222211 1236787777776532 122223345899999999999764
Q ss_pred CCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCC------------------------------------
Q 010884 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------------------------------------ 217 (498)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~------------------------------------ 217 (498)
. .........+.....++||||+-.+...++...+.+
T Consensus 208 ~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 222222233355678999999965432221111100
Q ss_pred ----------CCCeEEecC-----CCCCceEEEEEeecc-----------------------------------------
Q 010884 218 ----------QNPLVLKSS-----FNRPNLFYEVRYKDL----------------------------------------- 241 (498)
Q Consensus 218 ----------~~~~~~~~~-----~~r~ni~~~v~~~~~----------------------------------------- 241 (498)
-.+.+++.. ...|.....+.....
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 000111100 011111111111000
Q ss_pred ------------------------------------hhhHHHHHHHHH---HhcCCccEEEEeCccchHHHHHHHHHhCC
Q 010884 242 ------------------------------------LDDAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGG 282 (498)
Q Consensus 242 ------------------------------------~~~~~~~l~~~l---~~~~~~~~IVf~~t~~~~~~l~~~L~~~g 282 (498)
...|+..+..++ +..++.++||||+++..++.++..|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 011222233333 33456789999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHHHHHcCCC---eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEE
Q 010884 283 ISCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (498)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~---~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~ 359 (498)
+.+..+||+++.++|..++++|++|.. .+|++|.++|+|||++++++||+||+|+|+..|.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 999999999999999999999998865 48999999999999999999999999999999999999999999987655
Q ss_pred EE
Q 010884 360 LY 361 (498)
Q Consensus 360 ~~ 361 (498)
+|
T Consensus 521 v~ 522 (644)
T 1z3i_X 521 IY 522 (644)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=287.29 Aligned_cols=311 Identities=19% Similarity=0.185 Sum_probs=215.4
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHhHh------cCCCeEEEeCcHHHHHHHHHHHHHHcC--Cc
Q 010884 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEKG--IA 104 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~----~g~dvlv~apTG~GKTl~~~l~~l------~~~~~~lvl~P~~~L~~q~~~~l~~~g--i~ 104 (498)
.++||+|.+++..+. .++.+|+..+||+|||+..+..+. ...+++|||+| .+|+.||.+++.++. +.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 369999999998776 778999999999999987644332 23678999999 788899999999864 44
Q ss_pred eeEecCCCCHHHHHHHHHHH------hcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCCh
Q 010884 105 GEFLSSTQTMQVKTKIYEDL------DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (498)
+....+.............. ......++++++|++.+.... ..+. ...+++|||||||++...+.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--~~l~----~~~w~~vIvDEaH~lkn~~s--- 384 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--AELG----SIKWQFMAVDEAHRLKNAES--- 384 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--HHHH----TSEEEEEEETTGGGGCCSSS---
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH--HHHh----cCCcceeehhhhhhhcCchh---
Confidence 44444443322211111100 012335789999998775421 1122 23489999999999976442
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCC-------------------------------eEEecC-
Q 010884 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP-------------------------------LVLKSS- 226 (498)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~-------------------------------~~~~~~- 226 (498)
.+......+.....++|||||..+...++...+.+-.| .+++..
T Consensus 385 ----~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 385 ----SLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ----HHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ----HHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 33333444555668999999965544444443332211 111100
Q ss_pred ----CCCCceEEEEEeecc-------------------------------------------------------------
Q 010884 227 ----FNRPNLFYEVRYKDL------------------------------------------------------------- 241 (498)
Q Consensus 227 ----~~r~ni~~~v~~~~~------------------------------------------------------------- 241 (498)
...|.....+.....
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 011211111111100
Q ss_pred -------------hhhHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHc
Q 010884 242 -------------LDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (498)
Q Consensus 242 -------------~~~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (498)
...|+..|.+++... .+.++||||..+..++.|+..|...|+.+..+||+++.++|..+++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 012334445555442 45789999999999999999999999999999999999999999999998
Q ss_pred CCC---eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEE
Q 010884 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (498)
Q Consensus 307 g~~---~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~ 361 (498)
+.. .+|++|.++|.|||++.++.||+|++|+|+..+.|++||++|.|+...+.+|
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 654 4999999999999999999999999999999999999999999987765554
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=1.2e-28 Score=265.76 Aligned_cols=201 Identities=21% Similarity=0.282 Sum_probs=150.3
Q ss_pred cEEEEeccccc-cccCCCChHHHHHHHHHHHhC-------------------CCCCEEEEeecCChHHHHHHHHHhCCCC
Q 010884 160 NLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (498)
Q Consensus 160 ~~iViDEaH~i-~~~g~~fr~~~~~l~~l~~~~-------------------~~~~~l~lSAT~~~~~~~~i~~~l~~~~ 219 (498)
.+|||||+|++ .+|+..++..+..+..+...- ...+++++|||+++..... .
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~-----~--- 398 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH-----S--- 398 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH-----C---
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh-----h---
Confidence 57899999986 456655555555444443210 1467899999998764321 0
Q ss_pred CeEEec-----CCCCCceEEEEEeecchhhHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCC
Q 010884 220 PLVLKS-----SFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (498)
Q Consensus 220 ~~~~~~-----~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l 292 (498)
..++.. +...|. +.+... ......+...+.. ..+.++||||+|++.++.+++.|.+.|+.+..+||++
T Consensus 399 ~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPL--VRVKPT---ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp SEEEEECSCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hCeeeeeeccCCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 011111 112222 222211 2333444444432 2456899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC-----CCCHHHHHHHHhhcCCCCCCceEEEEEccchH
Q 010884 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (498)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~ 367 (498)
++.+|..+++.|++|+++|||||+++++|+|+|+|++||+++. |.|..+|+||+|||||.| .|.+++|++..+.
T Consensus 474 ~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 474 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 9999999999999999999999999999999999999999998 999999999999999996 8999999998776
Q ss_pred HHHHHHH
Q 010884 368 RRMEFIL 374 (498)
Q Consensus 368 ~~~~~~~ 374 (498)
...+.+.
T Consensus 553 ~~~~~i~ 559 (664)
T 1c4o_A 553 AMQRAIE 559 (664)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=7.7e-28 Score=268.09 Aligned_cols=324 Identities=11% Similarity=0.074 Sum_probs=202.2
Q ss_pred ChhHHHHHHHHHhcC------CCCCCHHHHHHHHHHHc--------------CCCEEEEcCCCchHHHHHHHhHh---c-
Q 010884 21 HEKEALVKLLRWHFG------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPAL---A- 76 (498)
Q Consensus 21 ~~~~~~~~~l~~~fg------~~~~~~~Q~~~i~~i~~--------------g~dvlv~apTG~GKTl~~~l~~l---~- 76 (498)
...+.++..+....- ...+||+|.+|++.++. +++++++++||||||+++ ++++ .
T Consensus 248 ~~~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~ 326 (1038)
T 2w00_A 248 FQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE 326 (1038)
T ss_dssp TSHHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT
T ss_pred hchHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh
Confidence 344566677765221 22499999999999875 368999999999999987 3332 1
Q ss_pred --CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhh
Q 010884 77 --KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH 154 (498)
Q Consensus 77 --~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~ 154 (498)
...++|||+|+++|+.|+...+..++... +........ ....+.. ...+++++||..+... ........
T Consensus 327 ~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~---l~~~L~~--~~~~IiVtTiqkl~~~--l~~~~~~~ 397 (1038)
T 2w00_A 327 LDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAG---LKRNLDK--DDNKIIVTTIQKLNNL--MKAESDLP 397 (1038)
T ss_dssp CTTCCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHH---HHHHHHC--SSCCEEEEEHHHHHHH--HHHCCCCG
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHH---HHHHhcC--CCCCEEEEEHHHHHHH--Hhcccchh
Confidence 13589999999999999999999875432 122222221 1122222 2367877777665321 00000011
Q ss_pred hcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH----HHHHHHhC--------------
Q 010884 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLC-------------- 216 (498)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i~~~l~-------------- 216 (498)
......+||+||||+... | .....++..+|+.++++|||||..... ......++
T Consensus 398 ~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~d 469 (1038)
T 2w00_A 398 VYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRD 469 (1038)
T ss_dssp GGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHH
T ss_pred ccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhC
Confidence 223578999999999642 2 123456778899999999999975321 01111111
Q ss_pred -CCCCeEEecCCCCCceE-----EE------EEe--ecchhhHHHHHHH----HHHhc--------CCccEEEEeCccch
Q 010884 217 -LQNPLVLKSSFNRPNLF-----YE------VRY--KDLLDDAYADLCS----VLKAN--------GDTCAIVYCLERTT 270 (498)
Q Consensus 217 -~~~~~~~~~~~~r~ni~-----~~------v~~--~~~~~~~~~~l~~----~l~~~--------~~~~~IVf~~t~~~ 270 (498)
...|..+......+.+. .. ... .-..+.....+.. ..... .+.++||||+|+..
T Consensus 470 g~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~ 549 (1038)
T 2w00_A 470 EKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDA 549 (1038)
T ss_dssp TSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHH
T ss_pred CCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHH
Confidence 11111110000000000 00 000 0001112223322 22111 23579999999999
Q ss_pred HHHHHHHHHhCC------------Cce-EeecCC----------C----------CH-----------------------
Q 010884 271 CDELSAYLSAGG------------ISC-AAYHAG----------L----------ND----------------------- 294 (498)
Q Consensus 271 ~~~l~~~L~~~g------------~~~-~~~h~~----------l----------~~----------------------- 294 (498)
|..+++.|.+.+ +++ ..+|++ + ++
T Consensus 550 A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~ 629 (1038)
T 2w00_A 550 AKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFST 629 (1038)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccc
Confidence 999999998754 444 566653 2 22
Q ss_pred ------HHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCC----ceEEEEEc
Q 010884 295 ------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP----SKSLLYYG 363 (498)
Q Consensus 295 ------~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~----~~~~~~~~ 363 (498)
..|..++++|++|+++|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |..+.|.+
T Consensus 630 ~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 630 DSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred cchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 148889999999999999999999999999999 678899999999999999999998753 44444443
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=3.3e-27 Score=210.09 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=137.1
Q ss_pred CCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHH
Q 010884 226 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (498)
Q Consensus 226 ~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (498)
+..++++...+..... ..|+..|.++++..+++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 4556777766665543 678899999998888889999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 306 ~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
+|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.+++|+.+.|...++.+.+..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988887776543
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.3e-26 Score=249.72 Aligned_cols=169 Identities=21% Similarity=0.291 Sum_probs=130.4
Q ss_pred CCCEEEEeecCChHHHHHHHHHhCCCCCe-EEec--CCCCCceEEEEEeecchhhHHHHHHHHHHh--cCCccEEEEeCc
Q 010884 193 DVPILALTATAAPKVQKDVMESLCLQNPL-VLKS--SFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLE 267 (498)
Q Consensus 193 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~-~~~~--~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~t 267 (498)
..+++++|||+++..... . .... .... +...|. +.+... ......+...+.. ..+.++||||+|
T Consensus 386 ~~q~i~~SAT~~~~~~~~-----~-~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-----T-DEMVEQIIRPTGLLDPL--IDVRPI---EGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-----C-SSCEEECCCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCCEEEEecCCChhHHHh-----h-hCeeeeeecccCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 567899999998764321 0 1111 1111 112222 222221 2334444444432 245689999999
Q ss_pred cchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCccEEEEeCC-----CCCHHHH
Q 010884 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAF 342 (498)
Q Consensus 268 ~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y 342 (498)
+..++.+++.|.+.|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||+++. |.|...|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhhcCCCCCCceEEEEEccchHHHHHHH
Q 010884 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (498)
Q Consensus 343 ~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~ 373 (498)
+||+|||||. ..|.+++|++..+....+.+
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 9999999998 68999999998776554443
No 62
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=4.6e-27 Score=223.12 Aligned_cols=194 Identities=19% Similarity=0.203 Sum_probs=150.7
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-----------CCCeEE
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVL 82 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-----------~~~~~l 82 (498)
...|.++.+.+.+.+.|++ +||..|+|+|.++++.++.|+++++.||||+|||++|++|++. .++.+|
T Consensus 28 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 3456778888999999997 8999999999999999999999999999999999999999874 256799
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCC
Q 010884 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL 158 (498)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~ 158 (498)
|++|+++|+.|+.+.++++ ++.+..+.++........... . ..+++++||+.+.... .........
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~~I~v~Tp~~l~~~l----~~~~~~~~~ 176 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R---GVEICIATPGRLIDFL----ECGKTNLRR 176 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H---CCSEEEECHHHHHHHH----HHTSCCCTT
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C---CCCEEEECHHHHHHHH----HcCCCCccc
Confidence 9999999999998888774 778888877776655433322 2 2678888877653211 012234566
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEe
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (498)
++++||||||++.+|| |++.+..+ +....++.|+++||||+++.+...+...+ .+|..+.
T Consensus 177 ~~~lViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~ 236 (242)
T 3fe2_A 177 TTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHIN 236 (242)
T ss_dssp CCEEEETTHHHHHHTT--CHHHHHHH--HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEE
T ss_pred ccEEEEeCHHHHhhhC--cHHHHHHH--HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 8999999999999998 88777765 22233588999999999999887665554 4665543
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=7.3e-27 Score=219.63 Aligned_cols=187 Identities=20% Similarity=0.303 Sum_probs=139.4
Q ss_pred CChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------------CCCeEEEeCcH
Q 010884 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPL 87 (498)
Q Consensus 20 ~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------------~~~~~lvl~P~ 87 (498)
+.+.+.+.+.|++ +||.+|+|+|.++++.+++|+++++.||||+|||++|++|++. .++++||++|+
T Consensus 25 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 25 FQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred hccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 4566889999987 7999999999999999999999999999999999999999874 45679999999
Q ss_pred HHHHHHHHHHHHHc---CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEE
Q 010884 88 IALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (498)
Q Consensus 88 ~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (498)
++|+.|+.+.++++ ++....+.++........ .+.. ..+++++||+.+.... .........+++|||
T Consensus 104 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~iiv~Tp~~l~~~~----~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 104 RELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK---GVDIIIATPGRLNDLQ----MNNSVNLRSITYLVI 173 (228)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS---CCSEEEECHHHHHHHH----HTTCCCCTTCCEEEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC---CCCEEEECHHHHHHHH----HcCCcCcccceEEEE
Confidence 99999999999985 556666665544332221 2222 2678888887653210 112233566899999
Q ss_pred eccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
||||++.+|| |++.+..+ +....++.+++++|||+++.+...+.. .+.+|..+
T Consensus 174 DEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~--~l~~p~~i 226 (228)
T 3iuy_A 174 DEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALS--YLKDPMIV 226 (228)
T ss_dssp CCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEE
T ss_pred ECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHH--HCCCCEEE
Confidence 9999999987 88777766 333345889999999999998775444 34566543
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=208.92 Aligned_cols=148 Identities=21% Similarity=0.336 Sum_probs=132.0
Q ss_pred CceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCC
Q 010884 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (498)
Q Consensus 230 ~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (498)
+++...+...+....|+..|.++++..+.+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|++
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 46666666655555689999999988888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCC------CCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhc
Q 010884 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (498)
Q Consensus 310 ~vlvaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~ 377 (498)
+|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.+++|+++.+...+..+.+..
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 159 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHh
Confidence 999999999999999999999999999 99999999999999999999999999999988887776654
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=221.70 Aligned_cols=184 Identities=24% Similarity=0.313 Sum_probs=139.0
Q ss_pred ccCCCCC--hhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----------CCCeEE
Q 010884 15 QKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (498)
Q Consensus 15 ~~~~~~~--~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----------~~~~~l 82 (498)
..|..+. +.+.+.+.|+. +||..|+|+|.++++.++.|++++++||||+|||++|++|++. .+..+|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 3444444 78899999997 8999999999999999999999999999999999999999874 367899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhc
Q 010884 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (498)
Q Consensus 83 vl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~ 156 (498)
|++|+++|+.|+.+.++++ ++....+.++........ .+..+ .+++++||+.+.. .+.. ....
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~---~~Iiv~Tp~~l~~-----~~~~~~~~~~ 199 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG---INIIVATPGRLLD-----HMQNTPGFMY 199 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC---CSEEEECHHHHHH-----HHHHCTTCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC---CCEEEEcHHHHHH-----HHHccCCccc
Confidence 9999999999999999985 445555666555443322 22222 6788888876532 1211 1235
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHh
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l 215 (498)
..+++|||||||++.+|| |++.+..+ ...+ ++.|+++||||+++.+.......+
T Consensus 200 ~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp TTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred ccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 668999999999999998 77766665 3344 468899999999999877554443
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=2e-26 Score=215.30 Aligned_cols=197 Identities=16% Similarity=0.214 Sum_probs=145.1
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcHHH
Q 010884 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIA 89 (498)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~~~ 89 (498)
.|+++++++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ..++||++|+++
T Consensus 5 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46678888999999987 89999999999999999999999999999999999999998753 468999999999
Q ss_pred HHHHHHHHHHHc--------CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCcc
Q 010884 90 LMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (498)
Q Consensus 90 L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~ 160 (498)
|+.|+.+.++++ ++.+..+.++..... .........+++++||+.+.. .+. .......++
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Iiv~Tp~~l~~-----~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK------ALEKLNVQPHIVIGTPGRIND-----FIREQALDVHTAH 152 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH------TTCCCSSCCSEEEECHHHHHH-----HHHTTCCCGGGCC
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH------HHHHcCCCCCEEEeCHHHHHH-----HHHcCCCCcCcce
Confidence 999999998875 455555555543221 111112246788888876542 111 122345589
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCc
Q 010884 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN 231 (498)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n 231 (498)
++||||||++.+|| |.. .+..+...++ +.+++++|||+++.+.+.+... +.+|..+....++++
T Consensus 153 ~lViDEah~~~~~~--~~~---~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 153 ILVVDEADLMLDMG--FIT---DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp EEEECSHHHHHHTT--CHH---HHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred EEEEcCchHHhhhC--hHH---HHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 99999999999988 544 4445555554 7889999999999887655443 467777766655544
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2.1e-26 Score=213.88 Aligned_cols=137 Identities=27% Similarity=0.404 Sum_probs=128.0
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccc
Q 010884 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (498)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~G 321 (498)
...|+..|.++++..+++++||||++++.++.+++.|.+.|+.+..+||+|++++|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35788999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcc
Q 010884 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
||+|++++||+|++|.+...|+||+||+||.|++|.|++++++.|...++.+.+...
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999888888776544
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=216.29 Aligned_cols=191 Identities=21% Similarity=0.303 Sum_probs=144.8
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----------CCCeEEE
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVLV 83 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----------~~~~~lv 83 (498)
...|.++++.+.+.+.|++ +|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++. .+.++||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 4457788899999999987 7999999999999999999999999999999999999999874 2568999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcC
Q 010884 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~ 157 (498)
++|+++|+.|+.+.+++++ +.+..+.++......... + ...+++++||+.+.. .+.. .....
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~----~~~~iiv~Tp~~l~~-----~l~~~~~~~~~ 170 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---I----NNINILVCTPGRLLQ-----HMDETVSFHAT 170 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---H----TTCSEEEECHHHHHH-----HHHHCSSCCCT
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---C----CCCCEEEECHHHHHH-----HHHhcCCcccc
Confidence 9999999999999999865 556666655443332221 1 136788888876632 1222 12345
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEe
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (498)
.+++|||||||++.+|| |.+.+. .+...++ +.++++||||+++.+.. .....+.+|..+.
T Consensus 171 ~~~~lViDEah~~~~~~--~~~~~~---~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMG--FADTMN---AVIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVW 231 (236)
T ss_dssp TCCEEEETTHHHHHHTT--THHHHH---HHHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEE
T ss_pred cccEEEEeChHHHhcCC--cHHHHH---HHHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEE
Confidence 68999999999999988 565444 4455554 77899999999998876 3334566776554
No 69
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3.3e-26 Score=205.39 Aligned_cols=145 Identities=17% Similarity=0.306 Sum_probs=129.0
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCe
Q 010884 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (498)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (498)
++...+.... ...|+..|.++++..+..++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 5 ~i~q~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 5 GLQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp CCEEEEEECC-GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CeEEEEEECC-hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 3433333333 357889999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccc-hHHHHHHHHHh
Q 010884 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (498)
Q Consensus 311 vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~-d~~~~~~~~~~ 376 (498)
|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+.|.+++|+++. +...++.+.+.
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~ 150 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 150 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876 44555555543
No 70
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=1.7e-26 Score=205.91 Aligned_cols=145 Identities=19% Similarity=0.316 Sum_probs=126.5
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeE
Q 010884 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (498)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 311 (498)
+...+........|...|.++++..+.+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 33333333333448899999998888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 312 lvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.+++|+++.|...+..+.+.
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 148 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 148 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHH
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888777654
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=4.5e-26 Score=217.15 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=149.2
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCc
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P 86 (498)
....|..+.+.+.+.+.|++ +|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. ..++||++|
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 34568888899999999987 89999999999999999999999999999999999999998752 457999999
Q ss_pred HHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh--hhhcCCcc
Q 010884 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (498)
Q Consensus 87 ~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~--~~~~~~l~ 160 (498)
+++|+.|+.+.++++ ++.+..+.++.......... .. ..+++++||+.+.. .+.. ......++
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~~I~v~Tp~~l~~-----~l~~~~~~~l~~~~ 188 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK---KPHIIIATPGRLID-----HLENTKGFNLRALK 188 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT---CCSEEEECHHHHHH-----HHHHSTTCCCTTCC
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC---CCCEEEECHHHHHH-----HHHcCCCcCccccC
Confidence 999999999998885 77777777776654432221 11 36788888876532 1221 22356689
Q ss_pred EEEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEEe
Q 010884 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (498)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (498)
+|||||||++.+|+ |++.+..+ ...++ +.++++||||+++.+.+.+... +.+|..+.
T Consensus 189 ~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~v~~~~~~~--l~~p~~i~ 246 (249)
T 3ber_A 189 YLVMDEADRILNMD--FETEVDKI---LKVIPRDRKTFLFSATMTKKVQKLQRAA--LKNPVKCA 246 (249)
T ss_dssp EEEECSHHHHHHTT--CHHHHHHH---HHSSCSSSEEEEEESSCCHHHHHHHHHH--CSSCEEEE
T ss_pred EEEEcChhhhhccC--hHHHHHHH---HHhCCCCCeEEEEeccCCHHHHHHHHHH--CCCCEEEE
Confidence 99999999999986 77766655 33443 7899999999999887744443 45666543
No 72
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=7.3e-26 Score=209.21 Aligned_cols=189 Identities=22% Similarity=0.224 Sum_probs=145.1
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~~ 88 (498)
..|+++++++.+.+.|++ +||..|+|+|.++++.++.++++++.+|||+|||++|++|++.. ..++||++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 357778899999999997 89999999999999999999999999999999999999998753 45799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEE
Q 010884 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (498)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (498)
+|+.|+.+.++++ ++.+....++........ .+ ....+++++||+.+.. .+. .......++++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL---DDTVHVVIATPGRILD-----LIKKGVAKVDHVQMI 150 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc---CCCCCEEEeCHHHHHH-----HHHcCCcCcccCCEE
Confidence 9999999999875 456666666665443221 12 2247888888886532 111 12234568999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeE
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (498)
||||||++.+++ |++.+.. +...++ +.+++++|||+++.+.+.+...+ .+|..
T Consensus 151 ViDEah~~~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 204 (206)
T 1vec_A 151 VLDEADKLLSQD--FVQIMED---IILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYE 204 (206)
T ss_dssp EEETHHHHTSTT--THHHHHH---HHHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred EEEChHHhHhhC--cHHHHHH---HHHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeE
Confidence 999999998865 6655544 444555 78999999999998877666554 45543
No 73
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=4.4e-26 Score=206.98 Aligned_cols=148 Identities=22% Similarity=0.390 Sum_probs=120.4
Q ss_pred CCCceEEEEEeecchhhHHHHHHHHHHhc-CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHc
Q 010884 228 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (498)
Q Consensus 228 ~r~ni~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (498)
..+++...+..... ..|+..|.++++.. ++.++||||++++.++.++..|...|+.+..+||++++.+|..+++.|++
T Consensus 16 ~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 16 TSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 35677766665543 57888899999876 46789999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHh
Q 010884 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (498)
Q Consensus 307 g~~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~ 376 (498)
|+++|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+.|.+++|+++.|...++.+.+.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 164 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 164 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777666554
No 74
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=9.5e-26 Score=212.34 Aligned_cols=191 Identities=17% Similarity=0.224 Sum_probs=144.9
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~ 87 (498)
...|..+.+.+.+.+.|++ +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. ..++||++|+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 3557778888999999987 89999999999999999999999999999999999999988642 4689999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccE
Q 010884 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (498)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~ 161 (498)
++|+.|+.+.++++ ++.+..+.++.......... ...+++++||+.+... +. .......+++
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~~~-----~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIKQL-----IELDYLNPGSIRL 169 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHHHH-----HHTTSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHHHH-----HhcCCcccccCCE
Confidence 99999999999986 45666677666654432221 1367888888765321 11 1223445889
Q ss_pred EEEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
|||||||++.+|| .|++.+..+ ...++ +.+++++|||+++.+.+.+.. .+.+|..+
T Consensus 170 lViDEah~~~~~~-~~~~~~~~i---~~~~~~~~~~l~lSAT~~~~~~~~~~~--~~~~p~~i 226 (230)
T 2oxc_A 170 FILDEADKLLEEG-SFQEQINWI---YSSLPASKQMLAVSATYPEFLANALTK--YMRDPTFV 226 (230)
T ss_dssp EEESSHHHHHSTT-SSHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHTT--TCSSCEEE
T ss_pred EEeCCchHhhcCc-chHHHHHHH---HHhCCCCCeEEEEEeccCHHHHHHHHH--HcCCCeEE
Confidence 9999999999987 377665554 44555 788999999999887654333 34566554
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.5e-25 Score=209.36 Aligned_cols=192 Identities=15% Similarity=0.203 Sum_probs=145.5
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC------CCeEEEeCcHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~------~~~~lvl~P~~ 88 (498)
..|.++.+++.+.+.|++ +|+..|+|+|.++++.+++++++++.+|||+|||++|++|++.. ..++||++|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 458889999999999987 89999999999999999999999999999999999999998753 34899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEE
Q 010884 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (498)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (498)
+|+.|+.+.++++ ++.+..+.++.......... ..+ ..+++++||+.+... +. .......++++
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~-----~~~~~~~~~~~~~l 162 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILAL-----ARNKSLNLKHIKHF 162 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHS--CCSEEEECHHHHHHH-----HHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcC--CCCEEEeCHHHHHHH-----HHhCCCCcccCCEE
Confidence 9999999999886 67777777776655443322 222 257888888765321 11 12234568999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhCC-CCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
||||||++.++. .|+..+. .+....+ +.+++++|||+++.+.+.... .+.+|..+
T Consensus 163 ViDEah~~~~~~-~~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~p~~i 218 (220)
T 1t6n_A 163 ILDECDKMLEQL-DMRRDVQ---EIFRMTPHEKQVMMFSATLSKEIRPVCRK--FMQDPMEI 218 (220)
T ss_dssp EEESHHHHHSSH-HHHHHHH---HHHHTSCSSSEEEEEESCCCTTTHHHHHT--TCSSCEEE
T ss_pred EEcCHHHHhccc-CcHHHHH---HHHHhCCCcCeEEEEEeecCHHHHHHHHH--HcCCCeEE
Confidence 999999998741 2554444 4444444 789999999999987663333 44566543
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=1.4e-25 Score=210.24 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=140.6
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~ 87 (498)
...|..+++.+.+.+.|++ +|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++. ..+++||++|+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 3457778889999999987 7999999999999999999999999999999999999999874 35689999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEE
Q 010884 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (498)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (498)
++|+.|+.+.++++ ++.+....++........ .+ ...+++++||+.+.. .+. .......+++|
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~----~~~~iiv~Tp~~l~~-----~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL----RDAQIVVGTPGRVFD-----NIQRRRFRTDKIKMF 159 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHHHHHH-----HHHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC----CCCCEEEECHHHHHH-----HHHhCCcchhhCcEE
Confidence 99999999999885 455555555543322211 11 126788888876532 111 22334568999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
||||||++.+|+ |+..+..+ ...+ ++.+++++|||+++.+...+...+ .+|..+
T Consensus 160 ViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i 214 (224)
T 1qde_A 160 ILDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRI 214 (224)
T ss_dssp EEETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEcChhHHhhhh--hHHHHHHH---HHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEE
Confidence 999999999987 66555544 3334 478899999999998877555543 456544
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=3.5e-25 Score=204.67 Aligned_cols=189 Identities=18% Similarity=0.192 Sum_probs=141.6
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc---------CCCeEEEeCcH
Q 010884 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSPL 87 (498)
Q Consensus 17 ~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~---------~~~~~lvl~P~ 87 (498)
|.++++++.+.+.|++ +|+..|+|+|.++++.+++++++++.+|||+|||++|++|++. ..+++||++|+
T Consensus 3 f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 3 FKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred hhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 5677888999999987 7999999999999999999999999999999999999998864 24679999999
Q ss_pred HHHHHHHHHHHHHcC--CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEe
Q 010884 88 IALMENQVIGLKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (498)
Q Consensus 88 ~~L~~q~~~~l~~~g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViD 165 (498)
++|+.|+.+.++++. +....+.++.......... .. ..+++++||+.+..... ........++++|+|
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~v~T~~~l~~~~~----~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 82 RELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR---GADAVVATPGRALDYLR----QGVLDLSRVEVAVLD 151 (207)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH---CCSEEEECHHHHHHHHH----HTSSCCTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC---CCCEEEECHHHHHHHHH----cCCcchhhceEEEEE
Confidence 999999999999874 4555566555433322221 11 26788888776532110 122335668999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 166 EAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
|||++.+++ |+..+..+ .... ++.+++++|||+++.+....... +.+|..+
T Consensus 152 Eah~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~p~~i 203 (207)
T 2gxq_A 152 EADEMLSMG--FEEEVEAL---LSATPPSRQTLLFSATLPSWAKRLAERY--MKNPVLI 203 (207)
T ss_dssp SHHHHHHTT--CHHHHHHH---HHTSCTTSEEEEECSSCCHHHHHHHHHH--CSSCEEE
T ss_pred ChhHhhccc--hHHHHHHH---HHhCCccCeEEEEEEecCHHHHHHHHHH--cCCCeEE
Confidence 999999876 66555544 4444 47889999999999876644443 4566554
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=2e-25 Score=211.12 Aligned_cols=192 Identities=19% Similarity=0.264 Sum_probs=139.5
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc------CCCeEEEeCcH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~------~~~~~lvl~P~ 87 (498)
...|+++++.+.+.+.|+. +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++. ...++||++|+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 4557788899999999987 8999999999999999999999999999999999999999875 34689999999
Q ss_pred HHHHHHHHHHHHHcC----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hhhhcCCccEE
Q 010884 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (498)
Q Consensus 88 ~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (498)
++|+.|+.+.+++++ +.+....++..... ....+..+ ..+++++||+.+.. .+. .......+++|
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~--~~~Ilv~Tp~~l~~-----~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAE--APHIVVGTPGRVFD-----MLNRRYLSPKWIKMF 177 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECC----------------C--CCSEEEECHHHHHH-----HHHTTSSCSTTCCEE
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcC--CCCEEEECHHHHHH-----HHHhCCcCcccCcEE
Confidence 999999999998864 44444444432221 11222222 25777777765432 111 12334568999
Q ss_pred EEeccccccccCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEE
Q 010884 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (498)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (498)
||||||++.+|| |+..+..+ ...+ ++.+++++|||+++.+.+.+...+ .+|..+
T Consensus 178 ViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i 232 (237)
T 3bor_A 178 VLDEADEMLSRG--FKDQIYEI---FQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRI 232 (237)
T ss_dssp EEESHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred EECCchHhhccC--cHHHHHHH---HHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEE
Confidence 999999999987 66555444 3444 478999999999999877655544 466554
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=203.49 Aligned_cols=144 Identities=19% Similarity=0.361 Sum_probs=124.3
Q ss_pred CCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCC
Q 010884 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (498)
Q Consensus 229 r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (498)
.+++...+..... ..|+..|.+++...+ +++||||++++.++.+++.|...|+.+..+||++++++|..+++.|++|+
T Consensus 27 ~~~i~q~~~~~~~-~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 27 SLDVIQEVEYVKE-EAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp -CCSEEEEEECCG-GGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CcCceEEEEEcCh-HHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4566655555443 578888999887754 57999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccc-hHHHHHHHH
Q 010884 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFIL 374 (498)
Q Consensus 309 ~~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~-d~~~~~~~~ 374 (498)
.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++|+++. |...++.+.
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~ 171 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLK 171 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976 555444443
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.93 E-value=7.9e-26 Score=214.95 Aligned_cols=190 Identities=22% Similarity=0.256 Sum_probs=136.5
Q ss_pred ChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc-------CCCeEEEeCcHHHHHHH
Q 010884 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMEN 93 (498)
Q Consensus 21 ~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~-------~~~~~lvl~P~~~L~~q 93 (498)
.+.+.+.+.|.+ +||..|+|+|.++++.++.|+++++.||||+|||++|++|++. .+.++||++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 567889999987 7999999999999999999999999999999999999999874 34579999999999999
Q ss_pred HHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHh---hhhcCCccEEEEec
Q 010884 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDE 166 (498)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDE 166 (498)
+.+.++++ ++.+..+.++. ....... .......+++++||+.+.. .+.. ......+++|||||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~I~v~Tp~~l~~-----~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAA---VAAKKFG--PKSSKKFDILVTTPNRLIY-----LLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHH---HHHTTTS--TTSCCCCCEEEECHHHHHH-----HHHSSSCSCCCTTCCEEEESS
T ss_pred HHHHHHHHhcccCceEEEEecCc---cHHHHhh--hhhcCCCCEEEECHHHHHH-----HHHhCCCCcccccCcEEEEeC
Confidence 99999986 33333332211 1000000 1112346788887776532 1111 12355689999999
Q ss_pred cccccccC-CCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHHHHHHHHhCCCCCeEEec
Q 010884 167 AHCISSWG-HDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (498)
Q Consensus 167 aH~i~~~g-~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (498)
||++.+|+ ..|+..+..+ +... .++.++++||||+++.+.+.+... +.+|..+..
T Consensus 184 ah~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~~--l~~p~~i~~ 240 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKLN--LDNVISVSI 240 (245)
T ss_dssp HHHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHHH--SSSCEEEEE
T ss_pred hHHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHHh--CCCCEEEEe
Confidence 99999987 3477666655 2222 247899999999999887744443 456665543
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.93 E-value=1.8e-25 Score=213.53 Aligned_cols=195 Identities=19% Similarity=0.235 Sum_probs=143.8
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---------------C
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------------P 78 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~---------------~ 78 (498)
...|..+.+.+.+.+.|+. +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. .
T Consensus 22 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred cCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 3457777888888889986 79999999999999999999999999999999999999998732 2
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHc----CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-hh
Q 010884 79 GIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KI 153 (498)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~~ 153 (498)
+++||++|+++|+.|+.+.++++ ++.+..+.++........ .+. ...+++++||+.+.. .+. ..
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~Ivv~Tp~~l~~-----~l~~~~ 169 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQ---MGCHLLVATPGRLVD-----FIEKNK 169 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHS---SCCSEEEECHHHHHH-----HHHTTS
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhC---CCCCEEEECHHHHHH-----HHHcCC
Confidence 58999999999999999999885 355555665554333221 122 236788888876532 111 12
Q ss_pred hhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCC--CCCEEEEeecCChHHHHHHHHHhCCCCCeEEe
Q 010884 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (498)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (498)
.....+++|||||||++.+|| |++.+..+........ +.++++||||+++.+.......+ .+|..+.
T Consensus 170 ~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~ 238 (253)
T 1wrb_A 170 ISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMT 238 (253)
T ss_dssp BCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred CChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEE
Confidence 234568999999999999987 7777766533212212 67899999999998877555544 4565543
No 82
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.1e-24 Score=211.97 Aligned_cols=136 Identities=26% Similarity=0.396 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcccccc
Q 010884 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (498)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~Gi 322 (498)
..|+..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 56888999999887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHHhcc
Q 010884 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (498)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~~~~ 378 (498)
|+|++++||+|++|.+...|+||+|||||.|++|.|++|+++.+...++.+.+...
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999888888776543
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=216.00 Aligned_cols=190 Identities=18% Similarity=0.221 Sum_probs=140.4
Q ss_pred cccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHhcC------CCeEEE
Q 010884 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (498)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l~~------~~~~lv 83 (498)
.+...|..+.+.+.+.+.|.. +||..|+|+|.++|+.++.| +|+++++|||+|||++|++|++.. .+.+||
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~li 167 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEE
Confidence 345677788899999999998 89999999999999999987 999999999999999999999842 347999
Q ss_pred eCcHHHHHHHHHHHHHHcC-----CceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH-h--hhh
Q 010884 84 VSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHS 155 (498)
Q Consensus 84 l~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~-~--~~~ 155 (498)
++||++|+.|+...++.++ +.+....++..... ......+|+++||+.+ ..+. + ...
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~IlV~TP~~l------~~~l~~~~~~~ 232 (300)
T 3fmo_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTV------LDWCSKLKFID 232 (300)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHH------HHHHTTTCCCC
T ss_pred EcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh---------hhcCCCCEEEECHHHH------HHHHHhcCCCC
Confidence 9999999999999988853 34444443332111 0012356777766654 2222 1 223
Q ss_pred cCCccEEEEeccccccc-cCCCChHHHHHHHHHHHhC-CCCCEEEEeecCChHHHHHHHHHhCCCCCeEEe
Q 010884 156 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (498)
Q Consensus 156 ~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (498)
...+++|||||||++.+ +| |+..+..+ ...+ +++|+++||||++..+....... +.+|.++.
T Consensus 233 l~~l~~lVlDEad~l~~~~~--~~~~~~~i---~~~~~~~~q~i~~SAT~~~~v~~~a~~~--l~~p~~i~ 296 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIK 296 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTT--HHHHHHHH---HTTSCTTCEEEEEESCCCHHHHHHHHHH--SSSCEEEE
T ss_pred hhhceEEEEeCHHHHhhccC--cHHHHHHH---HHhCCCCCEEEEEeccCCHHHHHHHHHH--CCCCeEEE
Confidence 45689999999999987 55 66555544 3444 47899999999999988744443 45676554
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=3.9e-27 Score=211.13 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=129.4
Q ss_pred CceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCC
Q 010884 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (498)
Q Consensus 230 ~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (498)
+++...+........++..|.++++..++.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 34444444433335677888888887777889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEEEEccchHHHHHHHHH
Q 010884 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (498)
Q Consensus 310 ~vlvaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~~~~~~d~~~~~~~~~ 375 (498)
+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+.|.++++++..|...++.+.+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999999999888776665544
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=4.3e-22 Score=211.93 Aligned_cols=319 Identities=22% Similarity=0.201 Sum_probs=223.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHHHH---
Q 010884 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE--- 100 (498)
Q Consensus 27 ~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~l~~--- 100 (498)
..+-++.+|+ .+++.|..+++.++.|+ ++.|.||+|||++|.+|++ ..+..++|++||+.|+.|....+..
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3455667899 78999999999999998 9999999999999999995 3466899999999999998888766
Q ss_pred -cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhh-------hhcC---CccEEEEecccc
Q 010884 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRG---LLNLVAIDEAHC 169 (498)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~-------~~~~---~l~~iViDEaH~ 169 (498)
+|+.+..+.++.....+...+ ..+|+|+||-.+.- ..+... .... .+.++||||||.
T Consensus 146 ~lGLsv~~i~Gg~~~~~r~~ay--------~~DIvyGTpgrlgf----DyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAERRKAY--------LADVTYVTNSELGF----DYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp TTTCCEEECCTTCCHHHHHHHH--------TSSEEEEEHHHHHH----HHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred hcCCeEEEEeCCCCHHHHHHHc--------CCCEEEECchhhhh----HHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 589999888887765544433 15777777655421 122211 2244 689999999999
Q ss_pred cc-ccCC----------CChHHHHHHHHHHHhCC----------------------------------------------
Q 010884 170 IS-SWGH----------DFRPSYRKLSSLRNYLP---------------------------------------------- 192 (498)
Q Consensus 170 i~-~~g~----------~fr~~~~~l~~l~~~~~---------------------------------------------- 192 (498)
++ +.+. .--..|..+..+...++
T Consensus 214 mLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly 293 (997)
T 2ipc_A 214 ILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLF 293 (997)
T ss_dssp HTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHH
T ss_pred HHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCcccc
Confidence 85 2110 00011111111111000
Q ss_pred ----------------------------------------------C---------------------------------
Q 010884 193 ----------------------------------------------D--------------------------------- 193 (498)
Q Consensus 193 ----------------------------------------------~--------------------------------- 193 (498)
+
T Consensus 294 ~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~Qn 373 (997)
T 2ipc_A 294 SPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQN 373 (997)
T ss_dssp TTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHH
Confidence 0
Q ss_pred -----CCEEEEeecCChHHHHHHHHHhCCCCCeEEecCCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEE
Q 010884 194 -----VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIV 263 (498)
Q Consensus 194 -----~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IV 263 (498)
..+.+||+|+..+. ..+.+..++. ++..+.++|.+.... .+. ....++..+.+-+.. ..+.|+||
T Consensus 374 yFr~Y~kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~-t~~~K~~AIv~eI~~~~~~GqPVLV 448 (997)
T 2ipc_A 374 FFRLYEKRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYR-TEKGKFYAVVEEIAEKYERGQPVLV 448 (997)
T ss_dssp HHTTSSEEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEES-SHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHhChHheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 12788999987654 4566666554 445567777764432 222 335667776655543 24688999
Q ss_pred EeCccchHHHHHHHHH----------------------------------------------------------------
Q 010884 264 YCLERTTCDELSAYLS---------------------------------------------------------------- 279 (498)
Q Consensus 264 f~~t~~~~~~l~~~L~---------------------------------------------------------------- 279 (498)
+|.|.+..+.|+..|.
T Consensus 449 gT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 528 (997)
T 2ipc_A 449 GTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWE 528 (997)
T ss_dssp ECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999999
Q ss_pred ------------hCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccccccCCc-------------------c
Q 010884 280 ------------AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV-------------------R 328 (498)
Q Consensus 280 ------------~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~GiD~p~v-------------------~ 328 (498)
+.|++...+++.....+-.-|.++=+. -.|-|||+++|+|.|+.=- .
T Consensus 529 ~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~ 606 (997)
T 2ipc_A 529 GLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYE 606 (997)
T ss_dssp HHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTST--TCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTH
T ss_pred ccchhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCC--CeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccc
Confidence 556776677776544443333333223 3599999999999997421 1
Q ss_pred -------------------------------------------------------EEEEeCCCCCHHHHHHHHhhcCCCC
Q 010884 329 -------------------------------------------------------LVCHFNIPKSMEAFYQESGRAGRDQ 353 (498)
Q Consensus 329 -------------------------------------------------------~VI~~~~p~s~~~y~Q~~GRagR~g 353 (498)
+||....+.|..---|-.||+||.|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQG 686 (997)
T 2ipc_A 607 WKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQG 686 (997)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSS
T ss_pred cccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCC
Confidence 8999999999999999999999999
Q ss_pred CCceEEEEEccchH
Q 010884 354 LPSKSLLYYGMDDR 367 (498)
Q Consensus 354 ~~~~~~~~~~~~d~ 367 (498)
.||.+..|++.+|-
T Consensus 687 DPGsSrF~LSLeDd 700 (997)
T 2ipc_A 687 DPGGSRFYVSFDDD 700 (997)
T ss_dssp CCCEEEEEEESSSH
T ss_pred CCCCeEEEEECChH
Confidence 99999999988773
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.4e-22 Score=213.94 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=172.1
Q ss_pred hcCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 010884 33 HFGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (498)
Q Consensus 33 ~fg~~~~~~~Q~~~i~~----i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (498)
..|| ++||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|+.|+++.+..++++...+
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l 81 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFL 81 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEe
Confidence 3577 799999998755 45789999999999999999999999999999999999999999999999988777666
Q ss_pred cCCCCHHHHH-----------------------------HHHHH------------HhcCCCcccEEEECcccccChhhH
Q 010884 109 SSTQTMQVKT-----------------------------KIYED------------LDSGKPSLRLLYVTPELTATPGFM 147 (498)
Q Consensus 109 ~~~~~~~~~~-----------------------------~~~~~------------~~~~~~~~~~l~~tpe~v~t~~~~ 147 (498)
.+........ ..+.. .+......+++++|+..+..+...
T Consensus 82 ~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~ 161 (540)
T 2vl7_A 82 IGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR 161 (540)
T ss_dssp ---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHH
T ss_pred cCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH
Confidence 5433110000 00000 011112357888888877766544
Q ss_pred HHHHh---hhhcCCccEEEEecccccccc----CC-----CChHHHH---------------------------------
Q 010884 148 SKLKK---IHSRGLLNLVAIDEAHCISSW----GH-----DFRPSYR--------------------------------- 182 (498)
Q Consensus 148 ~~l~~---~~~~~~l~~iViDEaH~i~~~----g~-----~fr~~~~--------------------------------- 182 (498)
..+.. ........++||||||.+... +. ++...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 241 (540)
T 2vl7_A 162 NSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLIDYMSKLIKD 241 (540)
T ss_dssp HHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTSCCS
T ss_pred HhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 33220 001233679999999998431 00 0000000
Q ss_pred ------------------HHHHHHH------------------------------------hCC-------------CCC
Q 010884 183 ------------------KLSSLRN------------------------------------YLP-------------DVP 195 (498)
Q Consensus 183 ------------------~l~~l~~------------------------------------~~~-------------~~~ 195 (498)
.+..+.. ..| ...
T Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~~~~~~~~~ 321 (540)
T 2vl7_A 242 GRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIEDALNVKTF 321 (540)
T ss_dssp SSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHHHHTCCSSC
T ss_pred ccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHHHhcCccCC
Confidence 1111100 000 011
Q ss_pred EEEEeecCChHHHHHHHHHhCCCCCe--EEecCCCCCceEEE--EEe-ecch----hhHHHHHHHHHHhcCCccEEEEeC
Q 010884 196 ILALTATAAPKVQKDVMESLCLQNPL--VLKSSFNRPNLFYE--VRY-KDLL----DDAYADLCSVLKANGDTCAIVYCL 266 (498)
Q Consensus 196 ~l~lSAT~~~~~~~~i~~~l~~~~~~--~~~~~~~r~ni~~~--v~~-~~~~----~~~~~~l~~~l~~~~~~~~IVf~~ 266 (498)
+|++|||+++.. ++.... .+...+....+... +.. -+.. ......|.+++.. .++.++||++
T Consensus 322 ~IltSATL~p~~--------~~~~~f~~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~-~~g~~lvff~ 392 (540)
T 2vl7_A 322 KVLMSGTLPESL--------TLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYEN-SSKSVLVFFP 392 (540)
T ss_dssp EEEEESSCCTTC--------CCTTEEEEECCCC-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT-CSSEEEEEES
T ss_pred eEEEcccCCCCc--------ccchhcCCchhheecCCcceeccccCCCcccccCHHHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 366666666510 000000 00000000000000 000 0000 1222334444444 3567999999
Q ss_pred ccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEE--EeCccccccccCC----ccEEEEeCCCC---
Q 010884 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV--ATVAFGMGIDRKD----VRLVCHFNIPK--- 337 (498)
Q Consensus 267 t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlv--aT~a~~~GiD~p~----v~~VI~~~~p~--- 337 (498)
|....+.+++.|.. .. ...++.. ..|..+++.|+++. .||+ +|..+++|||+|+ ++.||++++|.
T Consensus 393 S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 393 SYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp CHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCT
T ss_pred CHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCC
Confidence 99999999998865 33 4455554 46888999999865 5666 8899999999998 89999999984
Q ss_pred -CH--------------------------HHHHHHHhhcCCCCCCceEEEEEcc
Q 010884 338 -SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 338 -s~--------------------------~~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
++ ....|.+||+-|....--++++.+.
T Consensus 467 ~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 467 SDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp TSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 11 2347999999998655445666553
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=1.6e-19 Score=191.35 Aligned_cols=313 Identities=14% Similarity=0.101 Sum_probs=196.7
Q ss_pred CCCHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc----CCceeEec
Q 010884 38 QFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGEFLS 109 (498)
Q Consensus 38 ~~~~~Q~~~i~~----i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~----gi~~~~~~ 109 (498)
++||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|+.|..+.+..+ ++++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 589999998765 4578999999999999999999999998899999999999999999888876 56666554
Q ss_pred CCCCHH------------------------------HHHHHHHH---------------HhcCCCcccEEEECcccccCh
Q 010884 110 STQTMQ------------------------------VKTKIYED---------------LDSGKPSLRLLYVTPELTATP 144 (498)
Q Consensus 110 ~~~~~~------------------------------~~~~~~~~---------------~~~~~~~~~~l~~tpe~v~t~ 144 (498)
+..... ........ ........+++++|+-.+..+
T Consensus 83 gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~ 162 (551)
T 3crv_A 83 GKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFID 162 (551)
T ss_dssp CHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCH
T ss_pred cccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCH
Confidence 421100 00000000 011112368888888877766
Q ss_pred hhHHHHHhhhhcCCccEEEEeccccccccCCC------------------------------------------------
Q 010884 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD------------------------------------------------ 176 (498)
Q Consensus 145 ~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~------------------------------------------------ 176 (498)
.....+ .......++||||||.+.+ ..+
T Consensus 163 ~~~~~~---~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 238 (551)
T 3crv_A 163 RYREFI---DIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVE 238 (551)
T ss_dssp HHHTTS---CCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEECS
T ss_pred HHHHhc---CCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 422211 1112467899999998865 210
Q ss_pred -----ChHHHH-------------------------HHHHHH----H------------------------hCCC--CCE
Q 010884 177 -----FRPSYR-------------------------KLSSLR----N------------------------YLPD--VPI 196 (498)
Q Consensus 177 -----fr~~~~-------------------------~l~~l~----~------------------------~~~~--~~~ 196 (498)
+..... .+..+. . .+.. .++
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~sv 318 (551)
T 3crv_A 239 NVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSI 318 (551)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCEE
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCceE
Confidence 011100 010000 0 1112 689
Q ss_pred EEEeecCChHHHHHHHHHhCCCCCeE-------EecCCCCCceEEEEEee-c-----chhhHHHHH----HHHHHhcCCc
Q 010884 197 LALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-D-----LLDDAYADL----CSVLKANGDT 259 (498)
Q Consensus 197 l~lSAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~r~ni~~~v~~~-~-----~~~~~~~~l----~~~l~~~~~~ 259 (498)
|++|||+++ ...+...+++..+.. +..++ ..+....+... . .....+..+ .++++.. ++
T Consensus 319 IltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~-~g 394 (551)
T 3crv_A 319 ILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA-KA 394 (551)
T ss_dssp EEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC-SS
T ss_pred EEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC-CC
Confidence 999999998 466788888863332 12334 44443333211 1 001223333 3344444 45
Q ss_pred cEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEe--CccccccccC-----CccEEEE
Q 010884 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRLVCH 332 (498)
Q Consensus 260 ~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT--~a~~~GiD~p-----~v~~VI~ 332 (498)
.++||++|.+..+.+++. .+..+..-..+++ +.++++.|+.+.-.||+|| ..+.+|||+| ..+.||.
T Consensus 395 ~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI 468 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVI 468 (551)
T ss_dssp EEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEE
T ss_pred CEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEE
Confidence 699999999999999873 3544444333555 3456777754334799998 5999999999 3799999
Q ss_pred eCCCC---------------------CH---------HHHHHHHhhcCCCCCCceEEEEEcc
Q 010884 333 FNIPK---------------------SM---------EAFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 333 ~~~p~---------------------s~---------~~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
.++|. .. ....|-+||+-|....--++++.+.
T Consensus 469 ~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 469 VGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp ESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 98774 11 1125889999998765556666654
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=6.1e-20 Score=170.34 Aligned_cols=162 Identities=22% Similarity=0.225 Sum_probs=98.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcC---------CCeEEEeCcHHHHHHH-HHHHHHHc--
Q 010884 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (498)
Q Consensus 34 fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~---------~~~~lvl~P~~~L~~q-~~~~l~~~-- 101 (498)
.+...|+|+|.++++.++.++++++.+|||+|||++|+++++.. .+++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45557999999999999999999999999999999999888642 6789999999999999 55566654
Q ss_pred -CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHH--hhhhcCCccEEEEeccccccccCCCCh
Q 010884 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFR 178 (498)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~--~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (498)
++.+..+.+......... .+.. ..+++++||+.+.......... .......+++|||||||++...+. ++
T Consensus 109 ~~~~v~~~~g~~~~~~~~~---~~~~---~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~-~~ 181 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFP---EVVK---SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV-YN 181 (216)
T ss_dssp TTSCEEECCC---CCCCHH---HHHH---HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------C-HH
T ss_pred cCceEEEEeCCcccchhHH---hhcc---CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCc-HH
Confidence 455555554432111100 0111 2678888887653211000000 002244589999999999975432 33
Q ss_pred HHHHHHHHHH--Hh---------CCCCCEEEEeec
Q 010884 179 PSYRKLSSLR--NY---------LPDVPILALTAT 202 (498)
Q Consensus 179 ~~~~~l~~l~--~~---------~~~~~~l~lSAT 202 (498)
..+..+...+ .. .++.++++||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3222221111 11 167899999998
No 89
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=6.1e-19 Score=169.28 Aligned_cols=123 Identities=11% Similarity=0.130 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHHcC-CCe-EEEEeCc
Q 010884 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (498)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-vlvaT~a 317 (498)
..|+..|.+++... .+.++||||+++..++.++..|.+. |+.+..+||+++.++|..++++|++| .++ +|++|.+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 46777788777664 6788999999999999999999885 99999999999999999999999988 677 7899999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHhhcCCCCCCceEEE--EEccc
Q 010884 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 365 (498)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~~~--~~~~~ 365 (498)
+++|+|++++++||+||+|+++..|.|++||++|.|+.+.+.+ ++...
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999776544 44443
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=3.4e-17 Score=174.88 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=103.8
Q ss_pred CEEEEeecCChHHHHHHHHHhCCCCCeEE--ecCCCCCceEEEEEee------cchhhHH----HHHHHHHHhcCCccEE
Q 010884 195 PILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYK------DLLDDAY----ADLCSVLKANGDTCAI 262 (498)
Q Consensus 195 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~ni~~~v~~~------~~~~~~~----~~l~~~l~~~~~~~~I 262 (498)
.+|++|||+++ ...+...+++. ...+ ..+|+..+....+... ......+ ..|.++++..+ +.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 46899999997 56778888886 4333 3355555654333211 0111112 23444444444 4599
Q ss_pred EEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC--ccccccccCC--ccEEEEeCCCCC
Q 010884 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPKS 338 (498)
Q Consensus 263 Vf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~--a~~~GiD~p~--v~~VI~~~~p~s 338 (498)
||++|....+.+++.|+. +... ..-+++..+|..++++|+ ++-.||++|. .|++|||+|+ .+.||..++|..
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999998862 2222 555666778999999999 8888999985 9999999986 679999998841
Q ss_pred -------------------HH----------HHHHHHhhcCCCCCCceEEEEEcc
Q 010884 339 -------------------ME----------AFYQESGRAGRDQLPSKSLLYYGM 364 (498)
Q Consensus 339 -------------------~~----------~y~Q~~GRagR~g~~~~~~~~~~~ 364 (498)
.- ...|-+||+-|....--++++++.
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11 126999999998765556666654
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.75 E-value=3e-18 Score=166.12 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCc----eeEec
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIA----GEFLS 109 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~l~~~gi~----~~~~~ 109 (498)
+++|+|.++++.++.+++.++.+|||+|||+++++++.. ..+++||++|+++|++|+.+++++++.. ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 689999999999998888999999999999999877653 2459999999999999999999997542 23333
Q ss_pred CCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHH
Q 010884 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (498)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (498)
++..... ......+++++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 3322110 111347899999986654321 1223479999999999874 23444555
Q ss_pred hC-CCCCEEEEeecCChHH
Q 010884 190 YL-PDVPILALTATAAPKV 207 (498)
Q Consensus 190 ~~-~~~~~l~lSAT~~~~~ 207 (498)
.+ +..++++||||++...
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 5789999999997653
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=6.6e-18 Score=159.17 Aligned_cols=139 Identities=23% Similarity=0.174 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eeEecCCCCHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (498)
.++++|.+++..++.++++++++|||+|||++++.++....+.++|++|+++|+.|+.+.+.++++. +..+.+...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~--- 169 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB---
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---
Confidence 6899999999999999999999999999999999888877889999999999999999999998887 766665542
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCE
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 196 (498)
...+++++|++.+... .... ...+++|||||||.+...+ |. .+...++..++
T Consensus 170 ------------~~~~i~v~T~~~l~~~-----~~~~--~~~~~llIiDEaH~l~~~~------~~---~i~~~~~~~~~ 221 (237)
T 2fz4_A 170 ------------ELKPLTVSTYDSAYVN-----AEKL--GNRFMLLIFDEVHHLPAES------YV---QIAQMSIAPFR 221 (237)
T ss_dssp ------------CCCSEEEEEHHHHHHT-----HHHH--TTTCSEEEEECSSCCCTTT------HH---HHHHTCCCSEE
T ss_pred ------------CcCCEEEEeHHHHHhh-----HHHh--cccCCEEEEECCccCCChH------HH---HHHHhccCCEE
Confidence 1256777777654321 1111 2348999999999997643 22 34556678889
Q ss_pred EEEeecCChHH
Q 010884 197 LALTATAAPKV 207 (498)
Q Consensus 197 l~lSAT~~~~~ 207 (498)
++||||+....
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998654
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=147.28 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhc----C----CCeEEEeCcHHHHHHHHHHHHHHc-CCceeEe
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----K----PGIVLVVSPLIALMENQVIGLKEK-GIAGEFL 108 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~----~----~~~~lvl~P~~~L~~q~~~~l~~~-gi~~~~~ 108 (498)
.++++|.++++.+..|+++++.||||+|||+++.++++. . ...++++.|+++|+.|..+.+... +......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 478999999999999999999999999999887776653 1 237899999999999998888752 2211000
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccc-cccCCCChHHHHHHHHH
Q 010884 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSL 187 (498)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i-~~~g~~fr~~~~~l~~l 187 (498)
.+... ...-.......+++++||..+. .+... ....+++|||||||.+ .+.+ |. ...+..+
T Consensus 141 ~g~~~-------~~~~~~~~~~~~Ivv~Tpg~l~------~~l~~-~l~~~~~lVlDEah~~~~~~~--~~--~~~l~~i 202 (235)
T 3llm_A 141 CGYSV-------RFESILPRPHASIMFCTVGVLL------RKLEA-GIRGISHVIVDEIHERDINTD--FL--LVVLRDV 202 (235)
T ss_dssp EEEEE-------TTEEECCCSSSEEEEEEHHHHH------HHHHH-CCTTCCEEEECCTTSCCHHHH--HH--HHHHHHH
T ss_pred EEEee-------chhhccCCCCCeEEEECHHHHH------HHHHh-hhcCCcEEEEECCccCCcchH--HH--HHHHHHH
Confidence 00000 0000111133567666664432 22211 3567999999999984 3322 21 1345666
Q ss_pred HHhCCCCCEEEEeecCChHH
Q 010884 188 RNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 188 ~~~~~~~~~l~lSAT~~~~~ 207 (498)
....++.+++++|||++...
T Consensus 203 ~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHH
T ss_pred HhhCCCCeEEEEecCCCHHH
Confidence 77778999999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.51 E-value=9.1e-07 Score=94.22 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHH--HHHHHhHhc-----CCCeEEEeCcHHHHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKT--l~~~l~~l~-----~~~~~lvl~P~~~L~~q~~ 95 (498)
...+...|.+.|+-..-.++|++|+..++.++.+++.+|+|+||| +.++++.+. .+..+++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 445777788776533336899999999999999999999999999 667777764 2348999999999988766
Q ss_pred HHHH
Q 010884 96 IGLK 99 (498)
Q Consensus 96 ~~l~ 99 (498)
+.+.
T Consensus 214 e~~~ 217 (608)
T 1w36_D 214 ESLG 217 (608)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6554
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.13 E-value=1.6e-05 Score=85.49 Aligned_cols=71 Identities=24% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH--H-hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 010884 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~d-vlv~apTG~GKTl~~~--l-~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~ 108 (498)
.+.+-|.+|+..++..++ .+++||+|+|||.+.. + ..+..+.++||++||..-+.+.++++...+....-+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 478899999999987765 5889999999995432 2 234567899999999999999999998877665444
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.07 E-value=3.1e-05 Score=82.76 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 010884 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (498)
Q Consensus 36 ~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (498)
+..+.+.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+++.+.|++..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~ 252 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV 252 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEE
Confidence 346789999999999887788999999999996532 33332 467899999999999999999988776543
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=6.3e-05 Score=82.36 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (498)
..+.+.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.++++++|+..-+.+..+++.+.|+..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 45789999999999887778999999999996532 22222 46799999999999999999998877654
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.89 E-value=7.2e-05 Score=81.82 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~ 106 (498)
..+.+.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.++++++||..-+.+..+++.+.|++..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vv 428 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV 428 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEE
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceE
Confidence 45789999999999888778999999999996532 33333 467899999999999999999888776543
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.71 E-value=0.00011 Score=75.39 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=46.5
Q ss_pred cCCCCCCHHHHHHHHHHHcC----C-CEEEEcCCCchHHHHHH--HhHhc-CCC-eEEEeCcHHHHHHHHHHH
Q 010884 34 FGHAQFRDKQLDAIQAVLSG----R-DCFCLMPTGGGKSMCYQ--IPALA-KPG-IVLVVSPLIALMENQVIG 97 (498)
Q Consensus 34 fg~~~~~~~Q~~~i~~i~~g----~-dvlv~apTG~GKTl~~~--l~~l~-~~~-~~lvl~P~~~L~~q~~~~ 97 (498)
..+..+++.|++|+..++.. + .+++.|+.|+|||.+.. +..+. .+. .+++++||...+......
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhh
Confidence 56888999999999977542 3 89999999999995432 22232 333 689999998876554433
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.59 E-value=0.00016 Score=76.13 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHhHh-cCCCeEEEeCcHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALMENQVI 96 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~--~l~~l-~~~~~~lvl~P~~~L~~q~~~ 96 (498)
.+++.|.+++..++.++.+++.+|.|+|||.+. ++..+ ..+..+++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 478999999999999889999999999999543 22222 356789999999888765443
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.49 E-value=0.0012 Score=63.56 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccccc
Q 010884 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (498)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~~G 321 (498)
.|+..|..++.. ..+.+++||++..+..+-+..+|...|++...+.|.....+ .. -.++...+.+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCC
Confidence 455555555533 24678999999999999999999999999999999855432 11 124556666668888888
Q ss_pred cc-----cCCccEEEEeCCCCCHHHH-HHHHhhcCCCC----CCceEEEEEccchHHHHHHHH
Q 010884 322 ID-----RKDVRLVCHFNIPKSMEAF-YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFIL 374 (498)
Q Consensus 322 iD-----~p~v~~VI~~~~p~s~~~y-~Q~~GRagR~g----~~~~~~~~~~~~d~~~~~~~~ 374 (498)
+| ....+.||.||..+++..= +|.+-|+.|.| ++-..+.++...-.+....-+
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 87 6789999999999998875 99999999873 244566777766665554443
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.37 E-value=0.03 Score=59.75 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--Hh-HhcC----CCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALAK----PGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~-~l~~----~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
..+++.|.+|+.+ .+..++|.|+.|||||.+.. +. .+.. +..+|++++|+..+.+..+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999983 35689999999999996543 22 2222 357999999999999988888763
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.84 E-value=0.0052 Score=54.03 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCCchHHHHH
Q 010884 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 41 ~~Q~~~i~~i~---------~g~dvlv~apTG~GKTl~~ 70 (498)
+.|++++..+. .|+.+++.+|+|+|||...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 45666665543 3678999999999999654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.75 E-value=0.0031 Score=63.47 Aligned_cols=45 Identities=13% Similarity=-0.075 Sum_probs=34.1
Q ss_pred CEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
-.++.|+.|+|||...+- .+ .....+|++|+++++.++.+.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I~~-~~-~~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-RV-NFEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-HC-CTTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHH-Hh-ccCCeEEEeCCHHHHHHHHHHhhhc
Confidence 357899999999975432 22 3367799999999999988887543
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.36 E-value=0.036 Score=54.98 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhH----hcC-CCeEEEeCcHHHHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAK-PGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~----l~~-~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
.+.|+|..++..+...+-+++..+-+.|||.+....+ +.. +..+++++|+..-+......++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5789999999987655668899999999996543322 223 45799999999887777666554
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.038 Score=54.56 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
+.+++.+|+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999654
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.08 Score=51.02 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+..+++.+|+|+|||++.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999765
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.083 Score=47.21 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999653
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.68 E-value=0.0092 Score=58.28 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHHH
Q 010884 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 39 ~~~~Q~~~i~~i~----~g~---dvlv~apTG~GKTl~~~ 71 (498)
+.|||.+++..+. .|+ -+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688988876654 343 38999999999997654
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.66 E-value=0.0082 Score=54.90 Aligned_cols=36 Identities=25% Similarity=0.070 Sum_probs=24.3
Q ss_pred CCCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~ 88 (498)
|.-+++.+|+|+|||...+--+ ..++.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4457788999999997543222 23466788887754
No 111
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.59 E-value=0.039 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHhH
Q 010884 53 GRDCFCLMPTGGGKSMCYQIPA 74 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l~~ 74 (498)
.+.+++.+|+|+|||......+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3689999999999997654433
No 112
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.45 E-value=0.092 Score=55.39 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHh----HhcCC-CeEEEeCcHHHHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP----ALAKP-GIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~----~l~~~-~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
.+.|+|..++..+-..+-+++.+|-|.|||.+.... ++..+ ..+++++|+...+.+....++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 478999999998855677899999999999654322 22233 4899999999988887766655
No 113
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.45 E-value=0.056 Score=52.29 Aligned_cols=57 Identities=14% Similarity=0.006 Sum_probs=29.9
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHH
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~~~l 72 (498)
....|.++.-.+...+.|++...+...+|. .+.. ....+.+++.+|+|+|||+....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPH---LFKGNRKPTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGG---GCCTTCCCCCEEEEECSSSSCHHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHH---HHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 344555566666666666653211000000 0000 00135699999999999976543
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.43 E-value=0.013 Score=49.83 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMC 69 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~ 69 (498)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999964
No 115
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.43 E-value=0.034 Score=50.71 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
++.+++.+|+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999654
No 116
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.43 E-value=0.032 Score=54.34 Aligned_cols=150 Identities=21% Similarity=0.166 Sum_probs=71.9
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHHH---hHhcCCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEe-cCCCCH
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTM 114 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~l---~~l~~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~-~~~~~~ 114 (498)
.++.++.| .=+++.|++|+|||...+- .+...+..+++++. ...|+....... .+++...+ .+....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~--~~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDL--TSINMHDLESGRLDD 112 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHH--HCCCHHHHHHTCCCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHh--hCCCHHHHhcCCCCH
Confidence 55565544 3477888999999954321 12235677888864 334433332222 12222111 122223
Q ss_pred HHHHHHHH---HHhcCCCcccEEE-ECcccccChhhHHHHHhhhhcC-CccEEEEeccccccccC------CCChHHHHH
Q 010884 115 QVKTKIYE---DLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYRK 183 (498)
Q Consensus 115 ~~~~~~~~---~~~~~~~~~~~l~-~tpe~v~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g------~~fr~~~~~ 183 (498)
.....+.. .+.. ..+.+ -+|. +........+..+.... .+++||||-.+.+..-+ ...+.....
T Consensus 113 ~e~~~l~~a~~~l~~----~~l~I~d~~~-~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~ 187 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQ----KKLFFYDKSY-VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRE 187 (338)
T ss_dssp HHHHHHHHHHHHHHH----SCEEEECCTT-CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCeEEeCCCC-CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHH
Confidence 22222221 1211 22332 2222 11122334444444444 69999999999885421 112222233
Q ss_pred HHHHHHhCCCCCEEEEeecC
Q 010884 184 LSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 184 l~~l~~~~~~~~~l~lSAT~ 203 (498)
|..+.+.+ ++|++++|-.-
T Consensus 188 LK~lAkel-~vpVi~lsQl~ 206 (338)
T 4a1f_A 188 LKTLAREL-EIPIIALVQLN 206 (338)
T ss_dssp HHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHc-CCeEEEEEecC
Confidence 44433332 78888888764
No 117
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.34 E-value=0.19 Score=47.84 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
..+++.+|+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36999999999999765
No 118
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.33 E-value=0.078 Score=44.48 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=16.7
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 010884 51 LSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 51 ~~g~dvlv~apTG~GKTl~~ 70 (498)
..+..+++.+|+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34578999999999999754
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.27 E-value=0.055 Score=52.21 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=23.2
Q ss_pred CccEEEEecccccc-ccCCCChHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010884 158 LLNLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (498)
Q Consensus 158 ~l~~iViDEaH~i~-~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 205 (498)
...+++|||+|.+. .. ....+..+....+....+.++++...
T Consensus 105 ~~~vliiDEi~~l~~~~------~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE------SQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHH------HHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHH------HHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 46799999999986 31 12334444444333334445555444
No 120
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.22 E-value=0.059 Score=54.88 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=58.0
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-HhH-h-c-CCCeEEEeCcHHHHHHHHHHHHH--HcCCceeEec-CCCCH
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IPA-L-A-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTM 114 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~-l~~-l-~-~~~~~lvl~P~~~L~~q~~~~l~--~~gi~~~~~~-~~~~~ 114 (498)
.++.++.| .-+++.|++|+|||...+ +.. + . .+..+++++.-..- .+...++. ..++....+. +....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 56666643 457888999999995433 221 1 2 34477777632221 23333322 2333322111 11222
Q ss_pred HHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
.....+...+..-. ...+.+..+..+........+........+++||||+.+.+..
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 22222221111000 1233333222222223334444444445689999999999874
No 121
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.21 E-value=0.038 Score=56.12 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=70.5
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-Hh--Hhc-CCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEec-CCCC
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSP---LIALMENQVIGLKEKGIAGEFLS-STQT 113 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~-l~--~l~-~~~~~lvl~P---~~~L~~q~~~~l~~~gi~~~~~~-~~~~ 113 (498)
.++.++.| .-+++.|++|+|||...+ +. +.. .+..+++++. ...|+...... ..++....+. +...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~--~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCS--EARIDMNRVRLGQLT 266 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHH--HTTCCTTTCCGGGCC
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhCCCCC
Confidence 45666643 346788999999995332 22 122 3456777764 33333322211 2344322221 2222
Q ss_pred HHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccccc--CC--CChH-HH----HHH
Q 010884 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW--GH--DFRP-SY----RKL 184 (498)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~--g~--~fr~-~~----~~l 184 (498)
......+......-. ...+.+..+..+........+........+++||||..+.+... +. .-|. .+ ..|
T Consensus 267 ~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~L 345 (444)
T 2q6t_A 267 DRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGL 345 (444)
T ss_dssp HHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 333222222111100 02333332222222334444444444456999999999998643 21 1121 11 222
Q ss_pred HHHHHhCCCCCEEEEeec
Q 010884 185 SSLRNYLPDVPILALTAT 202 (498)
Q Consensus 185 ~~l~~~~~~~~~l~lSAT 202 (498)
..+.+. -++|+++++-.
T Consensus 346 k~lAke-~~v~vi~lsql 362 (444)
T 2q6t_A 346 KALARE-LGIPIIALSQL 362 (444)
T ss_dssp HHHHHH-HTSCEEEEEEC
T ss_pred HHHHHH-hCCeEEEEecC
Confidence 222222 27888888764
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.05 E-value=0.057 Score=50.74 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||....
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997654
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.03 E-value=0.17 Score=49.84 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.1
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999654
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.96 E-value=0.086 Score=50.88 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
+..+++.||+|+|||....
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3589999999999996543
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.92 E-value=0.12 Score=44.85 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
.+.+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999654
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.89 E-value=0.18 Score=44.71 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999654
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.86 E-value=0.064 Score=50.64 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=30.1
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHH
Q 010884 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i--~~g~dvlv~apTG~GKTl~~~l 72 (498)
..|.++.-.+...+.|.+..... -...+.+... ..++.+++.+|+|+|||.....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELP---LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHH---HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 34445555566666666532110 0111222222 2346799999999999976543
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.85 E-value=0.23 Score=42.97 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
+.+++.+|+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999654
No 129
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.065 Score=55.55 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=27.3
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 204 (498)
.-.+|+|||+|.+..... .....+..+... .+.++++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~---~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDR---GGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTST---THHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhH---HHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 356899999999976321 122344444443 4677888888754
No 130
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.79 E-value=0.067 Score=58.16 Aligned_cols=79 Identities=11% Similarity=-0.011 Sum_probs=66.7
Q ss_pred CccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-cccccccCCccEEEE
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVCH 332 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-~~~GiD~p~v~~VI~ 332 (498)
+.+++|.++|+.-+.+.++.+.+ .|+.+..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 46799999999988888877765 3789999999999999999999999999999999986 344578889999886
Q ss_pred eCCC
Q 010884 333 FNIP 336 (498)
Q Consensus 333 ~~~p 336 (498)
-..-
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5543
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.79 E-value=0.17 Score=49.72 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
++.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999654
No 132
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.76 E-value=0.2 Score=47.75 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
++.+++.+|+|+|||+....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHH
Confidence 46799999999999976543
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.73 E-value=0.15 Score=49.19 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 46 ~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp SEEEEESSSSSCHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 5799999999999976543
No 134
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.72 E-value=0.048 Score=57.71 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHH
Q 010884 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~ 91 (498)
.++.-|.+++..+..- .-.++.|+-|.|||.+.-+.+-.-...++|.+|+.+=+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~ 230 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKAST 230 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHH
Confidence 5788999999998863 34688999999999654433322234579999987644
No 135
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.69 E-value=0.11 Score=49.87 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
.+++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999654
No 136
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.66 E-value=0.048 Score=55.40 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
..+++.+|+|+|||.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3699999999999976644
No 137
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.48 E-value=0.11 Score=51.03 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 85 ~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5799999999999976543
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.45 E-value=0.093 Score=46.24 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCchHHHHHH-Hh--HhcCCCeEEEeCcHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLI 88 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~-l~--~l~~~~~~lvl~P~~ 88 (498)
|+-.++.+|.|+|||...+ +. ....+..++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 5557889999999997643 21 123566788888874
No 139
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.44 E-value=0.15 Score=51.73 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 168 ~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999976543
No 140
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.43 E-value=0.23 Score=47.05 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
++.+++.+|+|+|||.....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 46899999999999976543
No 141
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.24 E-value=0.039 Score=59.31 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--Hh-Hhc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~-~l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
.++|.|.+++.. .+..++|.|+.|||||.+.. +. .+. .+..+|+|+.|+..+.+..+++.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 478999999986 36789999999999996543 21 121 3468999999999999988888763
No 142
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.12 E-value=0.059 Score=58.39 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HhH-hc----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 37 ~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~--l~~-l~----~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
..++|.|.+|+.. .+..++|.|+.|||||.+.. +.- +. .+..+|+|+.|+..+.+..+++.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 3589999999986 35689999999999996532 222 22 2457999999999888887777653
No 143
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.04 E-value=0.19 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
.+.+++.+|+|+|||....
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3578999999999997554
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.92 E-value=0.53 Score=42.87 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=29.9
Q ss_pred cCCCEEEEcCCCchHHHHH-HHh--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 010884 52 SGRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~-~l~--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi 103 (498)
.|.-+++.+|+|+|||... ++. ....++.+++++--.. ..+..+.+...|.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 3456789999999999653 232 2234567777764322 2344445554443
No 145
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.84 E-value=0.8 Score=43.91 Aligned_cols=123 Identities=10% Similarity=0.064 Sum_probs=58.6
Q ss_pred HHHHHHHcC----CCEEEEcCCCchHHHHH-HHh--HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecCC----
Q 010884 45 DAIQAVLSG----RDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST---- 111 (498)
Q Consensus 45 ~~i~~i~~g----~dvlv~apTG~GKTl~~-~l~--~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~~~---- 111 (498)
..++.++.| .-+++.|++|+|||... ++. +...+..+++++.--. ..+...++.. .+++...+..+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s-~~~l~~R~~~~~~~i~~~~l~~~~~~l 134 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDF 134 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC-HHHHHHHHHHHHTTCCHHHHHSCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCC
Confidence 356666643 45788999999999433 222 2234567888763211 1233333332 23332111111
Q ss_pred --CCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCcc--EEEEeccccccc
Q 010884 112 --QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISS 172 (498)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~ 172 (498)
............+.. ..+.+..+..+........+........++ +||||=.+.+..
T Consensus 135 ~~~~~~~l~~a~~~l~~----~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 135 ASEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp CSSCHHHHHHHHHHHHT----SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred CHHHHHHHHHHHHHHhC----CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 011111111112211 234333222222233444455554445688 999999998864
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.84 E-value=0.46 Score=42.73 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.78 E-value=0.031 Score=50.10 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
-.++.|+.|+|||+...
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 35899999999997543
No 148
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.75 E-value=0.094 Score=50.40 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
++.+++.+|+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999643
No 149
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.75 E-value=0.15 Score=45.27 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=65.9
Q ss_pred CCEEEEcCCCchHHHHHHHh---HhcCCCeEEEeCcHHH-HHHHHHHHHHHcCCceeEecCCCC--HHHHHHHHHHHhcC
Q 010884 54 RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDSG 127 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~---~l~~~~~~lvl~P~~~-L~~q~~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~~~~~ 127 (498)
..+++..++|.|||.+++-- ++-.+.+++|+.-.+. .-..-...+..+++.......+.. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 47899999999999876533 3446777888743321 000011112223322222111110 0000000
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH
Q 010884 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (498)
Q Consensus 128 ~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 207 (498)
...-..-+....+....+.+++||+||+-....+|.--. ..+..+....|...-+.+|+-..+..
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000011223334444446799999999987766664322 33444555556556667777665543
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.75 E-value=0.059 Score=51.72 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=26.4
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 206 (498)
+..+++||||||.+... ....|.+.....|..-++++.++-+..
T Consensus 81 ~~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t~~~~k 124 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNTRRWHY 124 (305)
T ss_dssp SSSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEECChHh
Confidence 44689999999998642 223444555555544455555554433
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.72 E-value=0.25 Score=48.36 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999654
No 152
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.72 E-value=0.082 Score=60.80 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH---HhHhcC------CCeEEEeCcHHHHHHHHHHHHHH
Q 010884 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (498)
Q Consensus 38 ~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~---l~~l~~------~~~~lvl~P~~~L~~q~~~~l~~ 100 (498)
++++-|.++|..- +++++|.|+.|||||.+.. +-.+.. ...++++++|++.+.+..+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5899999999864 7899999999999997643 222222 24799999999988887777655
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.56 E-value=0.13 Score=49.07 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=28.6
Q ss_pred cccccccccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 010884 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 6 ~p~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~ 70 (498)
.|+........+.++.-.+...+.|.....- -....+++.||+|+|||...
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHH
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHH
Confidence 4444444444455555455555555542210 01125999999999999654
No 154
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.51 E-value=0.22 Score=48.84 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
.+.+++.+|+|+|||+....
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35799999999999976544
No 155
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.46 E-value=0.17 Score=50.61 Aligned_cols=79 Identities=8% Similarity=0.098 Sum_probs=65.8
Q ss_pred CCccEEEEeCccchHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc----cccccCCccE
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~----~GiD~p~v~~ 329 (498)
.+.++||.++|+.-+.++++.+.+ .|+.+..+||+.+..+|....+.+..|+.+|+|+|.-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 456799999999999999999998 588999999999999998889999999999999997422 1255668888
Q ss_pred EEEeCC
Q 010884 330 VCHFNI 335 (498)
Q Consensus 330 VI~~~~ 335 (498)
||.-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 885443
No 156
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.38 E-value=0.07 Score=47.39 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~ 88 (498)
|+=.++.+|.|+|||...+--+ ..++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 4456789999999996544222 23567888888874
No 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.28 Score=47.58 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=25.2
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 205 (498)
..++||||+|.+... ....+..+....+....+.++++...
T Consensus 111 ~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 111 FKLIILDEADAMTNA------AQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp CEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ceEEEEeCCCCCCHH------HHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 678999999998642 22345555555555445555555443
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.24 E-value=0.23 Score=50.17 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.||+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997543
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.23 E-value=0.38 Score=45.93 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=24.8
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChH
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 206 (498)
.-.++||||+|.+... ....+..+....+....+.++++....
T Consensus 110 ~~~vliiDe~~~l~~~------~~~~L~~~le~~~~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD------AQQALRRTMEMFSSNVRFILSCNYSSK 152 (327)
T ss_dssp SCEEEEEETGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CCeEEEEeCCCcCCHH------HHHHHHHHHHhcCCCCeEEEEeCCccc
Confidence 3578999999998542 223444455554433345555554443
No 160
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.21 E-value=0.16 Score=45.78 Aligned_cols=36 Identities=17% Similarity=-0.083 Sum_probs=23.9
Q ss_pred CCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~ 89 (498)
+=.++.+|.|+|||...+--+ ..++.+++++.|.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 345678999999996544222 245778888888764
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.18 E-value=0.91 Score=43.82 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.11 E-value=0.4 Score=46.30 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
..+++.+|+|+|||.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999976543
No 163
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.96 E-value=0.75 Score=45.16 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=38.0
Q ss_pred CCCCCcccccccccccCCCCChhHHHHHHHHHhcCCCCCCH-------------HHHHHHHHHHc-C-----CCEEEEcC
Q 010884 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRD-------------KQLDAIQAVLS-G-----RDCFCLMP 61 (498)
Q Consensus 1 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~fg~~~~~~-------------~Q~~~i~~i~~-g-----~dvlv~ap 61 (498)
|+|..++-.+........ ....+.+...+.+.||-..... .=...++.++. | .-+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~ 82 (366)
T 1xp8_A 4 MSKDATKEISAPTDAKER-SKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGP 82 (366)
T ss_dssp --------------CCHH-HHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEES
T ss_pred cccccccccCCCCCHHHH-HHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcC
Confidence 556665554444333211 1122344555555677543111 11235677776 2 45788899
Q ss_pred CCchHHHHHH-HhH--hcCCCeEEEeCcH
Q 010884 62 TGGGKSMCYQ-IPA--LAKPGIVLVVSPL 87 (498)
Q Consensus 62 TG~GKTl~~~-l~~--l~~~~~~lvl~P~ 87 (498)
+|+|||...+ +.. ...++.++++..-
T Consensus 83 pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 9999995432 211 2345667777643
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.94 E-value=0.81 Score=45.24 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.5
Q ss_pred CCEEE--EcCCCchHHHHH
Q 010884 54 RDCFC--LMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv--~apTG~GKTl~~ 70 (498)
..+++ .+|+|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 899999999654
No 165
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.92 E-value=1.1 Score=44.85 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=28.0
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQ 208 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~ 208 (498)
...++++||++.+... +. -......+..+... .|+.-++.++|+......
T Consensus 178 ~~~DvvIIDTaGr~~~-~~-d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGY-GE-ETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp TTCSEEEEEECCCSSS-CC-TTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred cCCCEEEEECCCCccc-cC-CHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 3478999999976430 01 11223344443332 356667888888755443
No 166
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.92 E-value=0.13 Score=46.14 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeC
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~ 85 (498)
.++.++. |.-+++.+|+|+|||.....-+...++.++++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 4455553 356789999999999544322224456666665
No 167
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.67 E-value=0.57 Score=43.22 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
.+.+++.+|+|+|||....
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3569999999999997654
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.63 E-value=1.2 Score=43.38 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=25.2
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 205 (498)
+.-.++||||+|.+.. .....+..+....|...+++++++-..
T Consensus 118 ~~~~vliiDe~~~l~~------~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGGGSCH------HHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcchhcH------HHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3457999999999854 123444445555444445555555443
No 169
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.53 E-value=0.21 Score=47.45 Aligned_cols=18 Identities=22% Similarity=-0.025 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||....
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999997654
No 170
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.50 E-value=1 Score=45.46 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=71.5
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-H--hHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecCC-----
Q 010884 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST----- 111 (498)
Q Consensus 46 ~i~~i~~g----~dvlv~apTG~GKTl~~~-l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~~~~~----- 111 (498)
.++.++.| .-+++.|++|+|||...+ + -+...+..+++++.--.- .|.+.++.. .+++...+..+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~-~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK-KENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT-THHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 46666643 347888899999995432 2 222346678888743211 223333322 23332111111
Q ss_pred -CCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCcc--EEEEeccccccccC-CCChH-HHH----
Q 010884 112 -QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWG-HDFRP-SYR---- 182 (498)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~~g-~~fr~-~~~---- 182 (498)
............+.. ..+.+..+.-+........+........++ +||||=.+.+..-+ ..-|. .+.
T Consensus 265 ~~~~~~l~~a~~~l~~----~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~ 340 (444)
T 3bgw_A 265 SEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 340 (444)
T ss_dssp CSCHHHHHHHHHHHHT----SCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHH
Confidence 011111111222221 234332221222233444555544445689 99999999886432 12222 122
Q ss_pred HHHHHHHhCCCCCEEEEeecC
Q 010884 183 KLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 183 ~l~~l~~~~~~~~~l~lSAT~ 203 (498)
.|..+.+. -++|++++|-..
T Consensus 341 ~Lk~lAke-~~v~vi~lsql~ 360 (444)
T 3bgw_A 341 DLKKMARE-LDVVVIALSQLS 360 (444)
T ss_dssp HHHHHHHH-HTCEEEEEEECC
T ss_pred HHHHHHHH-hCCeEEEEecCC
Confidence 23333222 278888887653
No 171
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.45 E-value=0.42 Score=48.97 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.1
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 239 ~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHH
Confidence 5799999999999986644
No 172
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.23 Score=49.27 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=32.3
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHH-HHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q-~~~i~~i~--~g~dvlv~apTG~GKTl~~~l 72 (498)
...|.+..-.++..+.|++..-+ |.. -+.+..+- -.+.+++.+|+|+|||+.+-.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~----Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIEL----PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHH----HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHH
Confidence 45566666666677777664221 111 12222221 236899999999999986543
No 173
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.26 E-value=1.8 Score=43.49 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=60.7
Q ss_pred CEEEEcCCCchHHHHHH-H-hHhc-CCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010884 55 DCFCLMPTGGGKSMCYQ-I-PALA-KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l-~~l~-~~~~~lvl~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (498)
-+++++++|+|||.+.. + ..+. .+.+++++. |.+.-+.+|...+.. .|+++..........
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~------------- 168 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAI------------- 168 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHH-------------
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHH-------------
Confidence 46788999999996543 2 2232 345555554 445444455554433 344432221111110
Q ss_pred CcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHH
Q 010884 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKV 207 (498)
Q Consensus 129 ~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~ 207 (498)
...............+++|||.+-.... -...+..+..+... .|+.-++.+.||.....
T Consensus 169 ----------------~i~~~al~~a~~~~~DvVIIDTaGrl~~----d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 169 ----------------KLAKEGVDYFKSKGVDIIIVDTAGRHKE----DKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp ----------------HHHHHHHHHHHHTTCSEEEEECCCCSSC----CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred ----------------HHHHHHHHHHHhCCCCEEEEECCCcccc----hHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 0111111111223478999999865321 23334445444433 35666788888875554
Q ss_pred HH
Q 010884 208 QK 209 (498)
Q Consensus 208 ~~ 209 (498)
..
T Consensus 229 ~~ 230 (443)
T 3dm5_A 229 YN 230 (443)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 174
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.16 E-value=0.24 Score=56.09 Aligned_cols=79 Identities=8% Similarity=0.098 Sum_probs=66.2
Q ss_pred CCccEEEEeCccchHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCccc----cccccCCccE
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~~----~GiD~p~v~~ 329 (498)
.+.++||.++|+.-+.++++.|.+ .++.+..+||+++..+|....+.+.+|..+|||+|.-.- .-++..++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456799999999999999999998 577899999999998988889999999999999996322 1156678999
Q ss_pred EEEeCC
Q 010884 330 VCHFNI 335 (498)
Q Consensus 330 VI~~~~ 335 (498)
||.-..
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 986543
No 175
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.04 E-value=1.8 Score=38.62 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=21.1
Q ss_pred CCCEEEEcCCCchHHHHH-HHhHh--cCCCeEEEeC
Q 010884 53 GRDCFCLMPTGGGKSMCY-QIPAL--AKPGIVLVVS 85 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~-~l~~l--~~~~~~lvl~ 85 (498)
|.-+++.+|+|+|||... ++... ...+.++++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456788999999999543 33211 2355666664
No 176
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.38 Score=48.40 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=30.5
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~--~g~dvlv~apTG~GKTl~~~l 72 (498)
....|.+..-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.+|+|+|||+.+-.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~f~~~g~~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNP---EIFQRVGIKPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCeEEEECCCCCcHHHHHHH
Confidence 34455555555555555555321110001 1222211 236899999999999986543
No 177
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.34 E-value=0.5 Score=42.99 Aligned_cols=38 Identities=21% Similarity=0.023 Sum_probs=26.1
Q ss_pred cCCCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~ 89 (498)
.|+=.++.+|.|+|||...+--+ ..++.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 35556788999999996543222 345678888888753
No 178
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.24 E-value=0.26 Score=49.68 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=35.9
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~--~g~dvlv~apTG~GKTl~~~l 72 (498)
....|.+..-.++..+.|++..-+.-.+ -+.+..+- -.+.+|+.+|+|+|||+.+-.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~---pe~f~~~Gi~pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLS---PERFATLGIDPPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHC---HHHHHHHTCCCCSEEEECSCTTSSHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcC---HHHHHHCCCCCCCceEeeCCCCCcHHHHHHH
Confidence 4567788887788888887743211111 12233321 236899999999999976543
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.24 E-value=0.61 Score=45.21 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
.+++.||+|+|||....
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999997543
No 180
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.33 Score=48.48 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=32.5
Q ss_pred ccccCCCCChhHHHHHHHHHhcCC--CCCCHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~--~~~~~~Q~~~i~~i~--~g~dvlv~apTG~GKTl~~~l 72 (498)
....|.++.-.++..+.|++..-+ ..+ +.+..+- -.+.+|+.+|+|+|||+.+-.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~p-----e~f~~~Gi~~prGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHP-----ELYEEMGIKPPKGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCC-----HHHHHHTCCCCSEEEEESSTTTTHHHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCH-----HHHHhCCCCCCCCCceECCCCchHHHHHHH
Confidence 455666666666666666664221 111 1222221 236799999999999986543
No 181
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.84 E-value=3.5 Score=39.18 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=19.6
Q ss_pred CCEEEEcCCCchHHHHHH-HhHh--cCCCeEEEeC
Q 010884 54 RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~-l~~l--~~~~~~lvl~ 85 (498)
+-+++.+|+|+|||.... +..+ ..+++++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 346789999999996443 2222 2345555543
No 182
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.64 E-value=0.44 Score=46.40 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHHH-HhHh--c------CCCeEEEeCcHH
Q 010884 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPAL--A------KPGIVLVVSPLI 88 (498)
Q Consensus 46 ~i~~i~~g-----~dvlv~apTG~GKTl~~~-l~~l--~------~~~~~lvl~P~~ 88 (498)
.++.++.| .-+++.+|+|+|||...+ +..- . .++.++++..-.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45666643 457889999999995433 3221 2 256778876543
No 183
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.51 E-value=0.94 Score=38.56 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=52.9
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEEC
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t 137 (498)
..+++||.++++.-+......|...|+.+..+++......+.........+. .+++++|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEC
Confidence 4678999999999999999999999999999999999999998888888775 7788777
No 184
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.49 E-value=1.2 Score=50.63 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=65.4
Q ss_pred CCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-cccccccCCccEEE
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-~~~GiD~p~v~~VI 331 (498)
.+.+++|.++|+.-+.+.++.+.+ .++.+..+++..+..++..+++.+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999999888888874 3678999999999999999999999999999999964 44457888888888
Q ss_pred EeC
Q 010884 332 HFN 334 (498)
Q Consensus 332 ~~~ 334 (498)
.-.
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 543
No 185
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.47 E-value=0.91 Score=39.15 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=61.3
Q ss_pred EEEcCCCchHHHHHHHhHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEE
Q 010884 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (498)
Q Consensus 57 lv~apTG~GKTl~~~l~~l~--~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (498)
++..+....|-. .+.-.+. ..+++||.++++..+......|...|+.+..+++..+...+..+......+. .+++
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 444444444543 2333332 3578999999999999999999999999999999999999999998888775 7888
Q ss_pred EECc
Q 010884 135 YVTP 138 (498)
Q Consensus 135 ~~tp 138 (498)
++|.
T Consensus 89 vaT~ 92 (175)
T 2rb4_A 89 ITTN 92 (175)
T ss_dssp EECC
T ss_pred EEec
Confidence 8883
No 186
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.47 E-value=1.2 Score=48.41 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 357999999999999754
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.42 E-value=2.5 Score=39.40 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.8
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+..|.-+++.+|+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 446677899999999999643
No 188
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.14 E-value=2.3 Score=37.35 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=58.2
Q ss_pred CchHHHHHHHhHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEEC
Q 010884 63 GGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (498)
Q Consensus 63 G~GKTl~~~l~~l~-~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t 137 (498)
...|.. +++-.+. ..+++||+++++.-+......|+..|+.+..+++......+..+......+. .+++++|
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT 111 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVAT 111 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEEC
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEc
Confidence 456753 3444443 3578999999999999999999999999999999999999998888888775 6777666
No 189
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.84 E-value=4.8 Score=38.36 Aligned_cols=17 Identities=24% Similarity=-0.123 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchHHHH
Q 010884 53 GRDCFCLMPTGGGKSMC 69 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~ 69 (498)
++.+++.||.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 57889999999999964
No 190
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.84 E-value=0.51 Score=51.20 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=38.2
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhHhcCCCeEEE
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lv 83 (498)
...+......++..+.|++..-+.-.+|.+..-+ .+...+.+++.+|+|+|||+.+-..+-..+...+.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~ 541 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence 3455666666777777777544432222221000 00123579999999999998665444443333333
No 191
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.79 E-value=2.5 Score=38.15 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
|.-+.+.+|+|+|||....
T Consensus 24 G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TSEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4568899999999996543
No 192
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.63 E-value=0.89 Score=41.78 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||....
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999996544
No 193
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=89.33 E-value=1.3 Score=38.06 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+++||.++++.-+......|...|+.+..+++......+..+......+. .+++++|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 4578999999999999999999999999999999999999999998888775 78888884
No 194
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.95 E-value=0.077 Score=48.76 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=30.9
Q ss_pred hHHHHHhhhhcCCccEEEEeccccccccCC---CChHHHHHHHHHHHhCCCCCEEEEeec
Q 010884 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRPSYRKLSSLRNYLPDVPILALTAT 202 (498)
Q Consensus 146 ~~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~fr~~~~~l~~l~~~~~~~~~l~lSAT 202 (498)
....+.........+++|+|-...+..... .++.....|..+.+.+ ++++++++-.
T Consensus 123 ~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~-~i~vi~~~q~ 181 (251)
T 2zts_A 123 FLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEA 181 (251)
T ss_dssp HHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECC
T ss_pred HHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc-CCCeEEEEEE
Confidence 344444444555688999999887743221 1233333444444332 6777776654
No 195
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.79 E-value=1.8 Score=39.70 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=50.0
Q ss_pred CCccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-------ccccccC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-------GMGIDRK 325 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-------~~GiD~p 325 (498)
...++||.++|+.-+.++++.+.+. ++.+..++|+.+...+...+ .+..+|+|+|.-- ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3456999999999999888877764 78899999999876543322 3567899998531 1234455
Q ss_pred CccEEEE
Q 010884 326 DVRLVCH 332 (498)
Q Consensus 326 ~v~~VI~ 332 (498)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 5555553
No 196
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.77 E-value=3.9 Score=36.36 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=54.5
Q ss_pred cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 76 ~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
...+.+||.++++.-+......|.+.|+.+..+++..+...+..+......+. .+++++|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~ 89 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATD 89 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecC
Confidence 35789999999999999999999999999999999999999999999888875 78888884
No 197
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.72 E-value=1.2 Score=37.93 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+++||.++++.-+......|...|+.+..+++......+..+......+. .+++++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 4678999999999999999999999999999999999999998888888765 77887773
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.27 E-value=1.4 Score=39.23 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred CccEEEEeCccchHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc------ccccccCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~------~~GiD~p~ 326 (498)
..++||.++++.-+.++++.+++. ++.+..++|+.+...+. +.+.++..+|+|+|.-. ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999998888764 78899999999876654 34455777899999531 12244555
Q ss_pred ccEEEE
Q 010884 327 VRLVCH 332 (498)
Q Consensus 327 v~~VI~ 332 (498)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666554
No 199
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.27 E-value=6.9 Score=36.61 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=24.1
Q ss_pred HHHHHH----cCCCEEEEcCCCchHHHHHH-HhHh-c-CCC-eEEEeC
Q 010884 46 AIQAVL----SGRDCFCLMPTGGGKSMCYQ-IPAL-A-KPG-IVLVVS 85 (498)
Q Consensus 46 ~i~~i~----~g~dvlv~apTG~GKTl~~~-l~~l-~-~~~-~~lvl~ 85 (498)
+++.+. .|.-+++.+|+|+|||.... +... . ..+ .++++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 445544 45667889999999996443 2222 1 224 666664
No 200
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.04 E-value=7.2 Score=37.16 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHH
Q 010884 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMC 69 (498)
Q Consensus 42 ~Q~~~i~~i~~g~dvlv~apTG~GKTl~ 69 (498)
.+.+.+.. +..+-+++.+|.|+|||..
T Consensus 20 ~el~~L~~-l~~~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 20 KEIEKLKG-LRAPITLVLGLRRTGKSSI 46 (357)
T ss_dssp HHHHHHHH-TCSSEEEEEESTTSSHHHH
T ss_pred HHHHHHHH-hcCCcEEEECCCCCCHHHH
Confidence 33333433 3335788999999999954
No 201
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.01 E-value=1.2 Score=48.35 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+..-.
T Consensus 239 ~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5799999999999986543
No 202
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.88 E-value=3.4 Score=40.21 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCCCCHHH-------------HHHHHHHHc-C-----CCEEEEcCCCchHHHHHH-Hh--HhcCCCeEE
Q 010884 25 ALVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVL 82 (498)
Q Consensus 25 ~~~~~l~~~fg~~~~~~~Q-------------~~~i~~i~~-g-----~dvlv~apTG~GKTl~~~-l~--~l~~~~~~l 82 (498)
..+..+.+.||-..+.+.. ...++.++. | +-+++.+|+|+|||...+ +. +...+..++
T Consensus 16 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vl 95 (356)
T 1u94_A 16 AALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 95 (356)
T ss_dssp HHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3445556667755433221 235777775 2 457889999999996443 22 123456677
Q ss_pred EeCc
Q 010884 83 VVSP 86 (498)
Q Consensus 83 vl~P 86 (498)
++..
T Consensus 96 yid~ 99 (356)
T 1u94_A 96 FIDA 99 (356)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7765
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.86 E-value=0.83 Score=54.32 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=55.6
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH---HhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHH
Q 010884 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (498)
Q Consensus 46 ~i~~i~~------g~dvlv~apTG~GKTl~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (498)
.++.++. ++.+++.+|+|+|||.... ..+..++..++++..--++.... ++++|++..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~---------- 1480 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1480 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT----------
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch----------
Confidence 3777776 5789999999999996442 23344567888887654432222 445554321
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
.+++..|+-. ..+...+.........++|||||..-+.
T Consensus 1481 ---------------~l~v~~~~~~--E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 ---------------NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ---------------TCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------hceeecCChH--HHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 1223333311 1233333334344568999999997554
No 204
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.74 E-value=1.1 Score=45.54 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||+...
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997654
No 205
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.68 E-value=1.2 Score=38.97 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=49.7
Q ss_pred CCchHHHHHHHhHh---cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEEC
Q 010884 62 TGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (498)
Q Consensus 62 TG~GKTl~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t 137 (498)
....|-.. ++-.+ ...+++||.++++.-+......|+..|+.+..+++..+...+..+......+. .+++++|
T Consensus 28 ~~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT 103 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVAT 103 (185)
T ss_dssp CGGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEE
T ss_pred CcHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEc
Confidence 34567532 32222 24678999999999999999999999999999999988888888888887765 6777776
No 206
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.62 E-value=1.4 Score=40.14 Aligned_cols=71 Identities=8% Similarity=0.126 Sum_probs=49.8
Q ss_pred CccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-----ccc-ccccCCc
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKDV 327 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-----~~~-GiD~p~v 327 (498)
+..+||.++|+.-+.++++.+.+ .++.+..++|+.+...+...+. + ..+|+|+|.- +.. .+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45689999999998888777765 4889999999998776654433 2 4689999952 111 2445556
Q ss_pred cEEEE
Q 010884 328 RLVCH 332 (498)
Q Consensus 328 ~~VI~ 332 (498)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66553
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.52 E-value=0.42 Score=39.96 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.+..+++.+|+|+|||..+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 457899999999999976643
No 208
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.44 E-value=1.4 Score=43.01 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCCchHHHHHHHhH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~~ 74 (498)
....+++.+|+|+|||..+..-+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34689999999999998765433
No 209
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.27 E-value=1.2 Score=46.11 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=61.7
Q ss_pred CccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc------cccccccCCccEEE
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA------FGMGIDRKDVRLVC 331 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a------~~~GiD~p~v~~VI 331 (498)
.+.+||.++++.-+.+..+.|.+.|+.+..+|++.+..++..+...+..|..+|+++|.- +...++..++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 356899999999999999999999999999999999999999999999999999999852 11223445666666
Q ss_pred E
Q 010884 332 H 332 (498)
Q Consensus 332 ~ 332 (498)
.
T Consensus 145 i 145 (523)
T 1oyw_A 145 V 145 (523)
T ss_dssp E
T ss_pred E
Confidence 3
No 210
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.00 E-value=0.9 Score=47.72 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=53.9
Q ss_pred CccEEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHH--HcCCCeEEEEeC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 316 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f--~~g~~~vlvaT~ 316 (498)
.+.+||.++++.-+.+.++.|.+.|+.+..++|+++..++..+...+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45799999999999999999999999999999999999999888888 478899999997
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.74 E-value=0.56 Score=45.21 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHH-HHhH-hc-C------CCeEEEeCcHHHH-HHHHHHHHHHcCC
Q 010884 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY-QIPA-LA-K------PGIVLVVSPLIAL-MENQVIGLKEKGI 103 (498)
Q Consensus 46 ~i~~i~~g-----~dvlv~apTG~GKTl~~-~l~~-l~-~------~~~~lvl~P~~~L-~~q~~~~l~~~gi 103 (498)
.++.++.| .-+++.+|+|+|||... ++.. .. . ++.+++++--..+ ..+....++++|+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45666643 46788999999999543 3332 12 2 4677777644322 2233333445554
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.63 E-value=1.9 Score=47.35 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+++++.+|+|+|||....
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999996543
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.52 E-value=0.97 Score=41.15 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|+|+|||....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 46678899999999996543
No 214
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.51 E-value=5.2 Score=40.88 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.+|+|+|||+....
T Consensus 65 ~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999976543
No 215
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.31 E-value=0.73 Score=41.29 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 010884 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 36 ~~~~~~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~ 70 (498)
+...+..|..++..+..|.-+.+.+|.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33445577889999988999999999999999654
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.69 E-value=6.7 Score=40.02 Aligned_cols=153 Identities=12% Similarity=-0.003 Sum_probs=67.2
Q ss_pred HHHHHHc----CCCEEEEcCCCchHHHHHH-Hh--HhcC-CCeEEEeCcHHHHHHHHHHHHHH--cCCceeE---ecCC-
Q 010884 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-IP--ALAK-PGIVLVVSPLIALMENQVIGLKE--KGIAGEF---LSST- 111 (498)
Q Consensus 46 ~i~~i~~----g~dvlv~apTG~GKTl~~~-l~--~l~~-~~~~lvl~P~~~L~~q~~~~l~~--~gi~~~~---~~~~- 111 (498)
.++.++. |.-+++.|++|+|||...+ +. +... +..+++++---. ..+.+.++.. .+++... +..+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~ 309 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREI 309 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCC
Confidence 3455554 3457888999999995432 22 2223 557887764222 1233333322 3332210 0000
Q ss_pred CCHHHHHHHHHHHhcCCCcccEEEEC-cccccChhhHHHHHhhhhcCCccEEEEeccccccccCC-CChH-----HHHHH
Q 010884 112 QTMQVKTKIYEDLDSGKPSLRLLYVT-PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-----SYRKL 184 (498)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~t-pe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-----~~~~l 184 (498)
........+...+... ..+.+.. |...........+........+++||||=...+..-+. .-|. ....|
T Consensus 310 l~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~L 386 (503)
T 1q57_A 310 IENGKFDQWFDELFGN---DTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKL 386 (503)
T ss_dssp HHTSHHHHHHHHHHTT---TCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHH
Confidence 0000011111122111 2333332 21122233444555554455699999998887753211 1121 11223
Q ss_pred HHHHHhCCCCCEEEEeecC
Q 010884 185 SSLRNYLPDVPILALTATA 203 (498)
Q Consensus 185 ~~l~~~~~~~~~l~lSAT~ 203 (498)
..+.+. -++++++++-..
T Consensus 387 k~lak~-~~i~vi~~~q~~ 404 (503)
T 1q57_A 387 KGFAKS-TGVVLVVICHLK 404 (503)
T ss_dssp HHHHHH-HTCEEEEEEECC
T ss_pred HHHHHH-HCCeEEEEEcCC
Confidence 333222 267777776653
No 217
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.55 E-value=0.68 Score=41.62 Aligned_cols=38 Identities=24% Similarity=0.044 Sum_probs=24.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHhH---hcCCCeEEEeCcHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~~---l~~~~~~lvl~P~~~ 89 (498)
.|.=.++.+|-|+|||...+--+ ...+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 35556889999999996433222 234667888888654
No 218
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.47 E-value=1.3 Score=39.90 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=43.2
Q ss_pred CCccEEEEeCccchHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+..++...+ ...+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 3467999999999999999888763 67889999999876654432 3578999985
No 219
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.10 E-value=0.99 Score=43.29 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=17.6
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHH
Q 010884 46 AIQAVLSG-----RDCFCLMPTGGGKSMC 69 (498)
Q Consensus 46 ~i~~i~~g-----~dvlv~apTG~GKTl~ 69 (498)
.++.++.| .-+++.+|+|+|||..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 45666643 4578899999999954
No 220
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=84.66 E-value=4.3 Score=41.01 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=19.6
Q ss_pred HHHHH---HcCCCEEEEcCCCchHHHHH
Q 010884 46 AIQAV---LSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i---~~g~dvlv~apTG~GKTl~~ 70 (498)
+|+.+ .+|+.+++.+|.|+|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 55554 36888999999999999643
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.37 E-value=8.2 Score=39.24 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=19.4
Q ss_pred CEEEEcCCCchHHHHHH-HhHh--cCCCeEEEe
Q 010884 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVV 84 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~~l--~~~~~~lvl 84 (498)
-+.+++|+|+|||...- +..+ ..++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 46789999999996543 2222 235666665
No 222
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.04 E-value=3.6 Score=38.99 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=54.1
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+.+||.++++.-+......|...|+.+..+++..+...+..+......+. .+++++|.
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~ 86 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATD 86 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEec
Confidence 4789999999999999999999999999999999999999999998888876 88888884
No 223
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=83.74 E-value=1 Score=43.16 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+.-+++.+|+|+|||...
T Consensus 123 gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp SEEEEEECSCSSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 455789999999999543
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.62 E-value=4.7 Score=39.07 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHHHHHc-C-----CCEEEEcCCCchHHHHHH-HhH--hcCCCeEEEeCc
Q 010884 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSP 86 (498)
Q Consensus 45 ~~i~~i~~-g-----~dvlv~apTG~GKTl~~~-l~~--l~~~~~~lvl~P 86 (498)
..++.++. | +-+++.+|+|+|||...+ +.. ...++.++++.-
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35677776 3 457889999999995432 221 234566777654
No 225
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.32 E-value=0.58 Score=47.06 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=30.6
Q ss_pred cCCCEEEEcCCCchHHHHH--HHhHh-cCCCeEEEeCcHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALME 92 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~--~l~~l-~~~~~~lvl~P~~~L~~ 92 (498)
...++++.|+||+|||... +++.+ ..+..++|+=|--++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3568999999999999765 44443 45667888888877753
No 226
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.89 E-value=1.4 Score=48.43 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.5
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
.+++.+|||+|||..+.
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 227
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.80 E-value=2.1 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCchHHHHHHHh
Q 010884 53 GRDCFCLMPTGGGKSMCYQIP 73 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l~ 73 (498)
++.+++.+|+|+|||+....-
T Consensus 238 ~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 467999999999999765443
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.36 E-value=1.6 Score=44.80 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=23.0
Q ss_pred CCHHHHHHHHH-HHcCCCEEEEcCCCchHHHH
Q 010884 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (498)
Q Consensus 39 ~~~~Q~~~i~~-i~~g~dvlv~apTG~GKTl~ 69 (498)
+.+.+...+.. +..|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44556555543 45677899999999999964
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.26 E-value=5.8 Score=46.58 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=51.9
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH-Hh--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHH
Q 010884 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (498)
Q Consensus 46 ~i~~i~~------g~dvlv~apTG~GKTl~~~-l~--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (498)
.++.++. |.-+++.+|+|+|||...+ +. +...++.+++++--.++ .+.. .+.+|+..
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd~----------- 784 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDI----------- 784 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCG-----------
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCCh-----------
Confidence 4555654 3568889999999995433 21 12345567777643332 1111 33344321
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
-++++..+..+ ...+..+........+++||||+...+.
T Consensus 785 --------------~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 --------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp --------------GGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred --------------hheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 12344443321 2233334433334568999999999886
No 230
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.25 E-value=3 Score=36.56 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=41.9
Q ss_pred CccEEEEeCccchHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
+.++||.++++.-+.++++.+.+. +..+..++|+.+..+.... ..+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCH
Confidence 457999999999999988888753 6788899999886654322 245678999985
No 231
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=82.16 E-value=30 Score=31.60 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECccccc----ChhhHHHHHhhhhcCCccEEEE
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAI 164 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~----t~~~~~~l~~~~~~~~l~~iVi 164 (498)
.+.....+.+.+.|.....................+.... ++-++..|.... ....+..+.. ..+-+|++
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~ 105 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHHHh----cCCCEEEE
Confidence 4555666667778888777766655555455555555443 555555543221 1123333322 23677888
Q ss_pred ecccc---ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHHH---HHHHHh---CCCCCeEEecCCCCCceEEE
Q 010884 165 DEAHC---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESL---CLQNPLVLKSSFNRPNLFYE 235 (498)
Q Consensus 165 DEaH~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~---~i~~~l---~~~~~~~~~~~~~r~ni~~~ 235 (498)
|-... +..-+.|....-..+...+.......+.+++......... -+.+.+ ++... +.....
T Consensus 106 ~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~---------~~~~~~ 176 (298)
T 3tb6_A 106 NASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPS---------PDMIVT 176 (298)
T ss_dssp SSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCC---------GGGEEE
T ss_pred ecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCC---------cceEEE
Confidence 74321 1111223333333444333344666777787765532211 111111 21111 111111
Q ss_pred EEeecchhhHHHHHHHHHHhcCCc-cEEEEeCccchHHHHHHHHHhCCCc
Q 010884 236 VRYKDLLDDAYADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~-~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
.............+.+++...+.. +..|||.+...+..+.+.|++.|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 177 FTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp ECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 111111111256677778776542 6788999988898999999988764
No 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.15 E-value=3.1 Score=36.43 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=42.0
Q ss_pred CCccEEEEeCccchHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+.......+. ...+|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 3567999999999999999999875 467888999887655433222 2467999985
No 233
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.97 E-value=2.6 Score=37.77 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=45.1
Q ss_pred CCccEEEEeCccchHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc------ccccccCCc
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~------~~GiD~p~v 327 (498)
.+.++||.++|+.-+.++++.+.+ .++.+..++|+.+...+.. .+. ...+|+|+|.-- ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 356789999999999999998887 4778888999887655432 222 347899999521 113445555
Q ss_pred cEEEE
Q 010884 328 RLVCH 332 (498)
Q Consensus 328 ~~VI~ 332 (498)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55553
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.84 E-value=18 Score=34.61 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=28.3
Q ss_pred ccEEEEeccccccccCCCChHHHHHHHHHH-HhCCCCCEEEEeecCChHHHHH
Q 010884 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKD 210 (498)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~-~~~~~~~~l~lSAT~~~~~~~~ 210 (498)
.+++++|.+....... .. ...+..+. ...|+.+++++.+|........
T Consensus 212 ~d~vliDtaG~~~~~~-~l---~~eL~~i~ral~~de~llvLDa~t~~~~~~~ 260 (328)
T 3e70_C 212 IDVVLIDTAGRSETNR-NL---MDEMKKIARVTKPNLVIFVGDALAGNAIVEQ 260 (328)
T ss_dssp CSEEEEEECCSCCTTT-CH---HHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH
T ss_pred chhhHHhhccchhHHH-HH---HHHHHHHHHHhcCCCCEEEEecHHHHHHHHH
Confidence 5678899887643211 12 23333332 2347888889998877655543
No 235
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.76 E-value=5.6 Score=39.05 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=52.8
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+++||+++++.-+....+.|++.|+.+..+++......+..+......+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4678999999999999999999999999999999999999998888888776 66776664
No 236
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=81.73 E-value=13 Score=33.56 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
.+++.++.|+|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58889999999997643
No 237
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.59 E-value=4.1 Score=36.82 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=36.0
Q ss_pred CCccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+.+.... .+.+..+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECH
Confidence 3457999999999999999888764 5677888887764432 3344567688999983
No 238
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.51 E-value=1.6 Score=41.77 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=28.5
Q ss_pred CEEEEcCCCchHHHHHH-Hh-Hhc-C--CCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 010884 55 DCFCLMPTGGGKSMCYQ-IP-ALA-K--PGIVLVVSPLIALMENQVIGLKEKGIA 104 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~-~l~-~--~~~~lvl~P~~~L~~q~~~~l~~~gi~ 104 (498)
-+++.+|+|+|||...+ +. ..+ . ++.++++..--++-. .+++++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd 81 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVD 81 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCC
Confidence 47889999999995432 21 122 2 577888876555532 135555543
No 239
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.16 E-value=1.7 Score=41.61 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.4
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHH
Q 010884 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 48 ~~i~~g~dvlv~apTG~GKTl~~~ 71 (498)
.++..++.+++.+|+|+|||....
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 445568899999999999996543
No 240
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.65 E-value=7.4 Score=35.77 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=49.7
Q ss_pred CccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC------cc-ccccccCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV------AF-GMGIDRKD 326 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~------a~-~~GiD~p~ 326 (498)
+.++||.++|+.-+.++++.+++ .+..+..++|+.+....... +..+ .+|+|+|. .. ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 55689999999999999888876 36678889998876654332 3334 78999994 11 12355666
Q ss_pred ccEEEE
Q 010884 327 VRLVCH 332 (498)
Q Consensus 327 v~~VI~ 332 (498)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
No 241
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.94 E-value=3.6 Score=38.63 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
...+++.+|+|+|||....
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997654
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.61 E-value=7.5 Score=37.76 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=28.3
Q ss_pred HHHHHHHc-C-----CCEEEEcCCCchHHHHHH-HhHh--cCCCeEEEeCcHHH
Q 010884 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPLIA 89 (498)
Q Consensus 45 ~~i~~i~~-g-----~dvlv~apTG~GKTl~~~-l~~l--~~~~~~lvl~P~~~ 89 (498)
..++.++. | .-+++.+|+|+|||...+ +... ..++.++++..-.+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 35677776 3 457889999999995432 2221 24567777765433
No 243
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=79.20 E-value=25 Score=37.16 Aligned_cols=82 Identities=28% Similarity=0.233 Sum_probs=65.2
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~ 156 (498)
.+.++||+++++.-++.....|...|+++..+++......+..+......+. ++++++|.- ...|+ ..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~--l~~Gl--------Di 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINL--LREGL--------DI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCC--CSTTC--------CC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecch--hhCCc--------cc
Confidence 5679999999999999999999999999999999999999999988888775 778887752 22221 22
Q ss_pred CCccEEEEeccccc
Q 010884 157 GLLNLVAIDEAHCI 170 (498)
Q Consensus 157 ~~l~~iViDEaH~i 170 (498)
..++++|+=+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 34778888887653
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.82 E-value=1.8 Score=43.30 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHcC--CCEEEEcCCCchHHHH
Q 010884 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (498)
Q Consensus 39 ~~~~Q~~~i~~i~~g--~dvlv~apTG~GKTl~ 69 (498)
+.+.+..++..++.. .-+++.+|||+|||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 345677777776643 3578999999999964
No 245
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.62 E-value=13 Score=44.50 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHHHHHHc------CCCEEEEcCCCchHHHHHH-Hh--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHH
Q 010884 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (498)
Q Consensus 45 ~~i~~i~~------g~dvlv~apTG~GKTl~~~-l~--~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 115 (498)
..++.++. |.-+++.+|+|+|||...+ +. +...++.+++++---++-. . .++.+|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~-~--~a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP-I--YARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH-H--HHHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH-H--HHHHcCCCH----------
Confidence 35677775 3567889999999995433 21 1234567777764433311 1 133444321
Q ss_pred HHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccccc
Q 010884 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (498)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (498)
-++++..|..+ ...+..+..+.....+++||||....+.
T Consensus 436 ---------------~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ---------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ---------------TTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------HHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12333333211 1233333333334568999999999886
No 246
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.52 E-value=6.3 Score=38.40 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
...+++.+|+|+|||.....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 35799999999999976543
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.41 E-value=1 Score=42.13 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=30.1
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHH-HHHHHHHHH--cCCCEEEEcCCCchHHHHHH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~-Q~~~i~~i~--~g~dvlv~apTG~GKTl~~~ 71 (498)
...|.++.-.+++.+.|++..- .|+ ..+++..+- -.+.+++.+|+|+|||+..-
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 4567778777888888876432 121 123444332 12349999999999997554
No 248
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.03 E-value=12 Score=36.93 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHHH
Q 010884 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 46 ~i~~i~~-----g~dvlv~apTG~GKTl~~~ 71 (498)
.++.++. |.-+.+.+|+|+|||....
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 3555553 3567889999999995443
No 249
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=77.97 E-value=2.8 Score=42.95 Aligned_cols=28 Identities=36% Similarity=0.408 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCEEEEcCCCchHHHHHHH
Q 010884 45 DAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 45 ~~i~~i~~g~dvlv~apTG~GKTl~~~l 72 (498)
.++.++..+.++++.+|+|+|||.....
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 3445566789999999999999976543
No 250
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=77.93 E-value=41 Score=30.65 Aligned_cols=177 Identities=11% Similarity=0.034 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.++....+.+.+.|.....................+.... ++-++..|... ....+..+ ....+-+|++|...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~~~----~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHDYLRTE----LPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCHHHHHS----SCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChHHHHHh----hccCCCEEEEeccc
Confidence 4555566667778888777776655555555555555544 55555554433 22232222 22346778887543
Q ss_pred c---ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH----HHH---HHHhCCCCCeEEecCCCCCceEEEEEe
Q 010884 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDV---MESLCLQNPLVLKSSFNRPNLFYEVRY 238 (498)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i---~~~l~~~~~~~~~~~~~r~ni~~~v~~ 238 (498)
. +..-+.|.......+.+.+.......+.+++........ .-+ ....++.... ..+...
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--------~~~~~~--- 166 (291)
T 3egc_A 98 RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQ--------EWIAAG--- 166 (291)
T ss_dssp CCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCG--------GGEEC----
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCH--------HHeEeC---
Confidence 2 111122333333344333334467778888877532211 111 1222221110 000000
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
....+.....+.+++... +.+..|||.+...+..+.+.|.+.|+.
T Consensus 167 ~~~~~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 167 GVRADNGRDGAIKVLTGA-DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp -----CCHHHHHHHHTC--CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CCChhHHHHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 011122345566666554 455678899988888899999887654
No 251
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=77.63 E-value=5.5 Score=35.76 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3567999999999999999888764 47889999988755443322 4578999985
No 252
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=77.53 E-value=15 Score=34.95 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=52.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+.+||+++++.-+....+.|++.|..+..+++......+..+......+. .+++++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 4568999999999999999999999999999999999999998888888765 77777763
No 253
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.48 E-value=1.4 Score=44.22 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=32.0
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCHHH-HHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010884 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q-~~~i~~i~--~g~dvlv~apTG~GKTl~~~l 72 (498)
....|.++.-.++..+.|++..-+ |.. -+.+..+- -.+.+++.+|+|+|||+.+-.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~----pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkA 234 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVL----PMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARA 234 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHH----HHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHH
Confidence 345566666666666666653211 111 11222211 136899999999999976543
No 254
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=77.36 E-value=1.7 Score=34.07 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=32.9
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
+..+++|||.+-..+...+..|.+.|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3567999999988899999999999999999999874
No 255
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.33 E-value=6.3 Score=38.52 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+++||+++++.-+......|.+.++.+..+++......+..+......+. .+++++|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 3578999999999999999999999999999999999999999999988776 77887774
No 256
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=77.09 E-value=1.7 Score=33.67 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
+..+++|||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3567999999998999999999999999999998864
No 257
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=76.91 E-value=2.1 Score=38.19 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=35.1
Q ss_pred CCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
...++||.++++.-+.++++.+.+ .++.+..++|+.+..++... + ...+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECH
Confidence 345799999999999998888875 36788899998876554322 1 2267888884
No 258
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.84 E-value=1.7 Score=42.00 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+-+++.+|||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357889999999996543
No 259
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=76.84 E-value=1.7 Score=33.48 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.7
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
+..+++|||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3567999999998899999999999999999999874
No 260
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.80 E-value=1.4 Score=41.88 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=26.7
Q ss_pred HHHHHHHH----cCCCEEEEcCCCchHHHHHH-HhHhcCCCeEEEeCc
Q 010884 44 LDAIQAVL----SGRDCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSP 86 (498)
Q Consensus 44 ~~~i~~i~----~g~dvlv~apTG~GKTl~~~-l~~l~~~~~~lvl~P 86 (498)
..++..+. .|+-+.+++|+|+|||.... +.-+. .|.+++.+|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 34555443 56778899999999995443 33334 677665443
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.71 E-value=1.4 Score=38.98 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999654
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=76.64 E-value=1.4 Score=38.04 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|+-+++++|+|+|||....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997543
No 263
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=76.47 E-value=7.4 Score=37.69 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+++||+++++.-+....+.|.+.|+.+..+++......+..+......+. .+++++|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECC
Confidence 4678999999999999999999999999999999999999998988888775 77888874
No 264
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.45 E-value=6.8 Score=38.19 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=53.3
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+.+||+++++.-+......|+..|+.+..+++......+..+......+. .+++++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcC
Confidence 4578999999999999999999999999999999999999999998888775 77888884
No 265
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=76.41 E-value=3.5 Score=41.94 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=39.5
Q ss_pred cCCCEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~ 101 (498)
.+....+.+-||+|||++..-.+-...+.+|||+|....+.+....|+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 34567889999999997543322234678999999999999999999986
No 266
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.25 E-value=7.1 Score=37.78 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=53.1
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
.+.+||+++++.-+......|+..++.+..+++......+..+......+. .+++++|.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 301 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTN 301 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 578999999999999999999999999999999999999999999888876 77877774
No 267
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=76.03 E-value=47 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCCEEEEcCCCchHHHHHH-HhHh--cCCCeEEEeC
Q 010884 53 GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~-l~~l--~~~~~~lvl~ 85 (498)
++-+.+.+++|+|||.... +..+ ..+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4456678999999996443 3222 2355665553
No 268
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.28 E-value=1.9 Score=42.17 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=18.1
Q ss_pred HHHcCCCEEEEcCCCchHHHHH
Q 010884 49 AVLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 49 ~i~~g~dvlv~apTG~GKTl~~ 70 (498)
.+..|..+++++|||+|||...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3457889999999999999643
No 269
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.91 E-value=1.8 Score=43.28 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=29.9
Q ss_pred cccCCCCChhHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHH
Q 010884 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~fg~~~~~~~Q~~~i~~i--~~g~dvlv~apTG~GKTl~~~l 72 (498)
...|.+..-.++..+.|++..-+.-..| +.+..+ .-.+.+++.||+|+|||+.+-.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p---~~~~~~g~~~prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQA---DLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTTTHHHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCceEEEECCCCCCHHHHHHH
Confidence 3455555555566666655321110001 112221 1235799999999999976543
No 270
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.88 E-value=3.7 Score=36.56 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEcCCCchHHHHH
Q 010884 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 24 ~~~~~~l~~~fg~~~~~~~Q~~~i~~i~~g----~dvlv~apTG~GKTl~~ 70 (498)
..+.+.|+ +-|+ ++..+ ...+..++++ +.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~-yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLR-YQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHH-HTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHH-HcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 34555555 2233 34344 5566666665 24889999999999644
No 271
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=74.73 E-value=1.5 Score=41.37 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.7
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
.+++.+|+|+|||..+.
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999997654
No 272
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=74.41 E-value=8 Score=37.87 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=53.2
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
..+++||+++++.-+......|.+.|+.+..+++......+..+......+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 3568999999999999999999999999999999999999999998888776 77887774
No 273
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.41 E-value=45 Score=33.16 Aligned_cols=41 Identities=27% Similarity=0.188 Sum_probs=23.3
Q ss_pred CEEEEcCCCchHHHHHH-H-hHhc-C-CCeEEEeC--cHHHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ-I-PALA-K-PGIVLVVS--PLIALMENQV 95 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l-~~l~-~-~~~~lvl~--P~~~L~~q~~ 95 (498)
-+++++++|+|||.+.. + ..+. + +.+++++. |.+..+.+|.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 46677999999996543 2 2222 3 55666554 4444444443
No 274
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.24 E-value=2.3 Score=39.28 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.+..+++.+|+|+|||.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 457899999999999976543
No 275
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.17 E-value=2.3 Score=33.18 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCceEeecCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l 292 (498)
+..+++|||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 356799999998889999999999999988888876
No 276
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.14 E-value=2.1 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
-+++.+|||+|||....
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46789999999996543
No 277
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=73.70 E-value=1.8 Score=38.62 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=39.1
Q ss_pred CccEEEEeCccchHHHHHHHHHhC--------CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
+.++||.++|+.-+.++++.+.+. ++.+..++|+.+...... ...+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE----KLNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC----CCSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH----HcCCCCCEEEeCH
Confidence 457999999999999988877653 677888999876443211 1123567888884
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.55 E-value=16 Score=34.18 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=19.2
Q ss_pred CEEEEcCCCchHHHHHHHhHhcCCCeEEEeCc
Q 010884 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P 86 (498)
-+++.||+|+|||.....-+-......++|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47889999999997543322112223455554
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.39 E-value=1.9 Score=38.28 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|+-+++.+|+|+|||....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35567889999999997553
No 280
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=73.25 E-value=16 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.5
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
-+++.+++|+|||.....
T Consensus 34 ~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEESCGGGTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999976543
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.20 E-value=1.6 Score=40.57 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.0
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 010884 51 LSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 51 ~~g~dvlv~apTG~GKTl~~ 70 (498)
..|.-+++.+|||+|||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667889999999999643
No 282
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.09 E-value=2.2 Score=40.60 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
-+++.+|||+|||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999654
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.05 E-value=2 Score=37.79 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.++.+++.+|+|+|||.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567889999999999976543
No 284
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=72.58 E-value=63 Score=30.23 Aligned_cols=177 Identities=11% Similarity=0.047 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.++....+.+.+.|.....................+.... ++-++..|......... .......+-+|++|...
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~----~~~~~~~iPvV~~~~~~ 153 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLR--CDAIMIYPRFLSVDEID----DIIDAHSQPIMVLNRRL 153 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTT--CSEEEECCSSSCHHHHH----HHHHHCSSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCCCChHHHH----HHHHcCCCCEEEEcCCC
Confidence 4555566667778887777665555544444444444443 55555555322222122 22222235677777421
Q ss_pred c---ccccCCCCh-HHHHHHHHHHHhCCCCCEEEEeecCChHHH----HHH---HHHhCCCCCeEEecCCCCCceEEEEE
Q 010884 169 C---ISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDV---MESLCLQNPLVLKSSFNRPNLFYEVR 237 (498)
Q Consensus 169 ~---i~~~g~~fr-~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i---~~~l~~~~~~~~~~~~~r~ni~~~v~ 237 (498)
. +..-+.|.. ..+.....|.+ .....+.+++........ .-+ .+..++.... .. ...
T Consensus 154 ~~~~~~~V~~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---------~~--~~~ 221 (338)
T 3dbi_A 154 RKNSSHSVWCDHKQTSFNAVAELIN-AGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNE---------KL--IAN 221 (338)
T ss_dssp SSSGGGEECBCHHHHHHHHHHHHHH-TTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCG---------GG--EEC
T ss_pred CCCCCCEEEEChHHHHHHHHHHHHH-CCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCc---------ce--EEe
Confidence 1 111122333 33333334444 466778888776432211 111 2222221110 00 001
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
.....+.-...+.+++... +.+..|||.+...+..+.+.|++.|+.
T Consensus 222 ~~~~~~~~~~~~~~ll~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 222 GKWTPASGAEGVEMLLERG-AKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp CCSSHHHHHHHHHHHHHTT-CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHcCC-CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 1112234455666677654 456788999988888888999887754
No 285
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=72.55 E-value=2.2 Score=41.13 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.6
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+..|..+++.+|||+|||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 446889999999999999643
No 286
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.52 E-value=8.3 Score=34.99 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=41.1
Q ss_pred CccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~ 316 (498)
..++||.++|+.-+.++++.+.+. ++.+..++|+.+....... + ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECH
Confidence 357999999999999988887653 5778889998876554322 2 34678999985
No 287
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=72.49 E-value=2.5 Score=32.09 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.2
Q ss_pred ccEEEEeCccchHHHHHHHHHhCCCceEeecCCCC
Q 010884 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
.+++|||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988899999999999999888888875
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=72.02 E-value=1.9 Score=37.84 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|+|+|||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56667889999999997543
No 289
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=71.32 E-value=3.7 Score=33.16 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=32.1
Q ss_pred ccEEEEe-CccchHHHHHHHHHhCCCceEeecCCCCHH
Q 010884 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDK 295 (498)
Q Consensus 259 ~~~IVf~-~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~ 295 (498)
.++|||| .+-..+...+..|...|+++..|.||+..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6899999 577778899999999999999999998643
No 290
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.05 E-value=46 Score=33.82 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=19.6
Q ss_pred CEEEEcCCCchHHHHHH-H-hHhc-CCCeEEEeCc
Q 010884 55 DCFCLMPTGGGKSMCYQ-I-PALA-KPGIVLVVSP 86 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l-~~l~-~~~~~lvl~P 86 (498)
.+++++++|+|||.... + ..+. .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 36778999999996543 2 1222 3455666653
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=71.03 E-value=2.7 Score=36.50 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+-+.+.+|+|+|||...-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457889999999997543
No 292
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=70.87 E-value=2.7 Score=37.65 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=16.5
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+..|+-+.+++|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346788999999999999654
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=70.76 E-value=2.2 Score=37.34 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~ 70 (498)
+.++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999643
No 294
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=70.34 E-value=7.1 Score=28.73 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (498)
+..+++|||.+-..+...+..|.+.|+. +..+ ||+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4578999999988899999999999986 5555 7754
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.65 E-value=2.7 Score=37.18 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677889999999999654
No 296
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=69.63 E-value=4.1 Score=37.82 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHH-HHHHHHcCC-----CEEEEcCCCchHHHHHH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q~~-~i~~i~~g~-----dvlv~apTG~GKTl~~~ 71 (498)
-+.+.+.|+- -|+. |.+.. ++..+++++ .+++.+|+|+|||+.+.
T Consensus 72 ~n~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3456677753 4655 55533 466777664 48899999999997654
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=69.56 E-value=2.6 Score=36.25 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
++.+++.+|+|+|||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999976543
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=69.55 E-value=1.8 Score=38.39 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 010884 53 GRDCFCLMPTGGGKSMC 69 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~ 69 (498)
++-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45689999999999854
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.27 E-value=53 Score=32.54 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=25.5
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHh-CCCCCEEEEeecCChHHH
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQ 208 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~ 208 (498)
...+++|||=+-.+.. -......+..+... .|+..++.+.|+......
T Consensus 179 ~~~DvVIIDTaG~l~~----d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av 227 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI----DEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL 227 (425)
T ss_dssp TTCSEEEEECCCCSSC----CHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHH
T ss_pred CCCCEEEEcCCCcccc----cHHHHHHHHHhhhccCCceEEEEEeccchHHHH
Confidence 3478899987654322 12233444444332 355556677777554443
No 300
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.20 E-value=25 Score=35.95 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=22.2
Q ss_pred cCCCEEEEcCCCchHHHHHH-HhHh--cCCCeEEEeCcH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPL 87 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~-l~~l--~~~~~~lvl~P~ 87 (498)
.|.-+++.+|+|+|||.... +..+ ..+..++++++-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34568889999999995432 2211 234456666643
No 301
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.15 E-value=12 Score=37.28 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=52.3
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
...+||+++++.-+......|.+.|+.+..+++......+..+......+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 344999999999999999999999999999999999999999999988875 77887775
No 302
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.88 E-value=17 Score=38.51 Aligned_cols=81 Identities=22% Similarity=0.199 Sum_probs=62.9
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~ 156 (498)
.+.++||.++++.-++.....|...|+.+..+++......+..+......+. ++++++|.- ...|+ ..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~--l~~Gl--------Di 505 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINL--LREGL--------DI 505 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCC--CCTTC--------CC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccCh--hhcCc--------cC
Confidence 5779999999999999999999999999999999999999999988888775 778887732 22221 22
Q ss_pred CCccEEEEecccc
Q 010884 157 GLLNLVAIDEAHC 169 (498)
Q Consensus 157 ~~l~~iViDEaH~ 169 (498)
..++++|+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 2366777766544
No 303
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=68.84 E-value=2.5 Score=37.09 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.6
Q ss_pred HcCCCEEEEcCCCchHHHHHH
Q 010884 51 LSGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 51 ~~g~dvlv~apTG~GKTl~~~ 71 (498)
..|.-+.+.+|+|+|||...-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356678899999999997543
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=68.79 E-value=2.6 Score=38.78 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 010884 56 CFCLMPTGGGKSMCY 70 (498)
Q Consensus 56 vlv~apTG~GKTl~~ 70 (498)
+++.+|||+|||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 578999999999654
No 305
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=68.70 E-value=5.8 Score=40.64 Aligned_cols=73 Identities=8% Similarity=0.056 Sum_probs=48.9
Q ss_pred CccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-----ccc-c-ccCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-----~~G-i-D~p~ 326 (498)
+.++||.++++.-+.++++.+.+. ++.+..+||+.+...+...+. ...+|+|+|.-. ..| + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 567999999999888888887764 899999999997665432221 236799999532 222 3 5678
Q ss_pred ccEEEEeC
Q 010884 327 VRLVCHFN 334 (498)
Q Consensus 327 v~~VI~~~ 334 (498)
+++||.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88888543
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.56 E-value=2.3 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l 72 (498)
+++.+|+|+|||.....
T Consensus 4 I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976543
No 307
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.49 E-value=2.5 Score=41.05 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||....
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999997654
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.47 E-value=3.4 Score=35.06 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
+.-+++.+|.|+|||...-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=68.39 E-value=2.9 Score=36.96 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.0
Q ss_pred HHHcCCCEEEEcCCCchHHHHHH
Q 010884 49 AVLSGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 49 ~i~~g~dvlv~apTG~GKTl~~~ 71 (498)
.+..|+-+.+.+|+|+|||...-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 56678888999999999996543
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=68.33 E-value=2.4 Score=37.44 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+..|+-+++.+|+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345678899999999999654
No 311
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=68.24 E-value=3.6 Score=31.99 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (498)
+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3567999999988899999999999995 888888874
No 312
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=68.24 E-value=3.6 Score=40.06 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+++.+++|.+ ++..++||+|||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3455678876 566779999999764
No 313
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=68.21 E-value=4.5 Score=41.42 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=50.2
Q ss_pred CccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-----ccc-c-ccCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-----~~G-i-D~p~ 326 (498)
+.++||.|+++.-+.++++.+.+. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 667999999998888877777654 899999999997655422221 236799998532 222 3 5667
Q ss_pred ccEEEEe
Q 010884 327 VRLVCHF 333 (498)
Q Consensus 327 v~~VI~~ 333 (498)
+++||.-
T Consensus 128 ~~~vViD 134 (555)
T 3tbk_A 128 FTLMIFD 134 (555)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7888753
No 314
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.12 E-value=3.3 Score=39.71 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
-+++.+|||+|||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997543
No 315
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=68.08 E-value=5.7 Score=32.98 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.3
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCC-ceEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l~ 293 (498)
+..++||||.+-..+...+..|...|+ ++..|.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356799999998888899999999999 5889999984
No 316
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=68.07 E-value=7.2 Score=42.37 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=48.2
Q ss_pred CccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-----cccc-c-ccCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKD 326 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-----~~~G-i-D~p~ 326 (498)
+.++||.|+++.-+.+++..+.+. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999988888877764 899999999997665432221 34789999953 1222 3 5667
Q ss_pred ccEEEEe
Q 010884 327 VRLVCHF 333 (498)
Q Consensus 327 v~~VI~~ 333 (498)
+++||.-
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7888843
No 317
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=67.96 E-value=7.7 Score=45.58 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=60.6
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHHH---hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHH
Q 010884 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (498)
Q Consensus 46 ~i~~i~~------g~dvlv~apTG~GKTl~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (498)
.++.++. |+-+.+.+|.|+|||...+- .+...++.++++.+-.+|-... ++++|++..-
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~--------- 1485 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN--------- 1485 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGG---------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHH---------
Confidence 4566664 35689999999999965432 2234688999999877774332 6777775432
Q ss_pred HHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccccccc
Q 010884 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (498)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (498)
+++.-|+.- ...+..+..+...+.+++||||..-.+..
T Consensus 1486 ----------------l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1486 ----------------LLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------------CEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----------------eEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 333333221 11233334444556689999999888754
No 318
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.53 E-value=2 Score=39.62 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
.+.+++.+|+|+|||....
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997653
No 319
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=70.76 E-value=1.1 Score=38.38 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=47.6
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEEC
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t 137 (498)
.+++||.++++.-+......|+..|+.+..+++......+..+......+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 467899999999999999999999999999999888888877777776664 6666665
No 320
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=67.27 E-value=2.5 Score=36.58 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.|.-+++.+|+|+|||...-+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456788999999999975543
No 321
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=67.18 E-value=6.6 Score=48.39 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCCCCCHHH-HHHH---HHHHcCCCEEEEcCCCchHHHHHHHhH
Q 010884 23 KEALVKLLRWHFGHAQFRDKQ-LDAI---QAVLSGRDCFCLMPTGGGKSMCYQIPA 74 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q-~~~i---~~i~~g~dvlv~apTG~GKTl~~~l~~ 74 (498)
.+.+.+.+++ .|+. +.+.+ ..++ +.+...+.++++||||+|||.++.+-+
T Consensus 891 ~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 891 VQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 3445555554 4665 44444 2233 344567889999999999999876433
No 322
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.18 E-value=21 Score=27.52 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=41.5
Q ss_pred EEEEeCccchHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHHcCCCe
Q 010884 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (498)
Q Consensus 261 ~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (498)
.+||....+...++...++..|..++.++++...+.|.+-++.|....+.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 35677777778888899999999999999999999999999999865443
No 323
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.15 E-value=6.8 Score=48.90 Aligned_cols=62 Identities=15% Similarity=0.291 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCCCCCCHHH-HHHHH---HHHcCCCEEEEcCCCchHHHHHHHh--HhcC----CCeEEEeCc
Q 010884 23 KEALVKLLRWHFGHAQFRDKQ-LDAIQ---AVLSGRDCFCLMPTGGGKSMCYQIP--ALAK----PGIVLVVSP 86 (498)
Q Consensus 23 ~~~~~~~l~~~fg~~~~~~~Q-~~~i~---~i~~g~dvlv~apTG~GKTl~~~l~--~l~~----~~~~lvl~P 86 (498)
.+.+.+.+++ .|+. +.|.+ .++++ .+...+.++++||||+|||.|+.+- ++.+ .....++-|
T Consensus 874 ~~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNP 945 (3245)
T 3vkg_A 874 RKKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDP 945 (3245)
T ss_dssp HHHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECT
T ss_pred HHHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECC
Confidence 3444555554 4664 44433 33443 3335568999999999999998643 3332 224456666
No 324
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=67.13 E-value=4.1 Score=39.05 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
.++.++.|.+ ++..++||+|||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678876 566789999999764
No 325
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=66.97 E-value=2.9 Score=33.69 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCccEEEEeCccch--HHHHHHHHHhCCCceEeecCCCC
Q 010884 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~--~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
+..+++|||.+-.. +...+..|.+.|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 35679999999776 88999999999999888999874
No 326
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=66.64 E-value=4.8 Score=39.59 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=25.7
Q ss_pred cCCCEEEEcCCCchHHHHHHHh---HhcCCCeEEEeCcHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~---~l~~~~~~lvl~P~~~ 89 (498)
.+.++++.+|||+|||.....- ....+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4568999999999999643221 1234566777767544
No 327
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=66.45 E-value=78 Score=28.86 Aligned_cols=179 Identities=10% Similarity=0.053 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.++....+.+.+.|.......... ..........+.... ++-++..|..... ..+..+.. ..+-+|++|...
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~--vdGiIi~~~~~~~-~~~~~l~~----~~iPvV~~~~~~ 98 (294)
T 3qk7_A 27 EMISWIGIELGKRGLDLLLIPDEP-GEKYQSLIHLVETRR--VDALIVAHTQPED-FRLQYLQK----QNFPFLALGRSH 98 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECT-TCCCHHHHHHHHHTC--CSEEEECSCCSSC-HHHHHHHH----TTCCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-hhhHHHHHHHHHcCC--CCEEEEeCCCCCh-HHHHHHHh----CCCCEEEECCCC
Confidence 455556666777888776665542 111222333333333 4555555433322 23333332 236778887631
Q ss_pred c---ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHH----HHHHHHHhCCCCCeEEecCCCCCceEEEEEeecc
Q 010884 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV----QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (498)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~----~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~ 241 (498)
. +..-+.|....-....+.+.......+.+++....... ..-+.+.+.-... ... +... +.....
T Consensus 99 ~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~-~~~~--~~~~~~ 170 (294)
T 3qk7_A 99 LPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGL-----MPL-AGYL--QKADPT 170 (294)
T ss_dssp CSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTC-----CCC-TTCE--EEECSS
T ss_pred CCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCC-----CCC-hhHe--ecCCCC
Confidence 1 11112233333333333333346677888887754321 1122222211110 000 1111 111122
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
.+..+..+.+++... ..+.-|||.+...+..+.+.|++.|+.
T Consensus 171 ~~~~~~~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 171 RPGGYLAASRLLALE-VPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHHHHHSS-SCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 244566677777654 456788999988888899999887754
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=66.40 E-value=3.9 Score=34.99 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.++.+++.+++|+|||....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999997654
No 329
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=66.30 E-value=3.9 Score=33.93 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=31.8
Q ss_pred CccEEEEeCcc--chHHHHHHHHHhCCCceEeecCCCC
Q 010884 258 DTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 258 ~~~~IVf~~t~--~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
..++||||.+- ..+...+..|...|+++..+.||+.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 56799999997 6889999999999999999999874
No 330
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=65.93 E-value=3.2 Score=39.37 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.+..+++.+|||+|||+.+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 346899999999999976543
No 331
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=65.80 E-value=3.5 Score=35.15 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
++-+++.+++|+|||.+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34578999999999976543
No 332
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=65.76 E-value=74 Score=28.37 Aligned_cols=179 Identities=14% Similarity=0.031 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.+.....+.+++.|.....................+.... ++-++..|..-.+......+... .+-+|++|..-
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~----~iPvV~~~~~~ 92 (272)
T 3o74_A 19 RIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARR--CDALFVASCLPPEDDSYRELQDK----GLPVIAIDRRL 92 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCCCSSCCHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCccccHHHHHHHHHc----CCCEEEEccCC
Confidence 3555555667778888877776655555555555555544 55555555432223344444332 36677777432
Q ss_pred c---ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH----HHHHHHhCCCCCeEEecCCCCCceEEEEEeecc
Q 010884 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (498)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~~ 241 (498)
. +..-+.|....-..+.+.+.......+.+++........ .-+.+.+.-... ...........
T Consensus 93 ~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~----------~~~~~~~~~~~ 162 (272)
T 3o74_A 93 DPAHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTG----------EVRRYQGEAFS 162 (272)
T ss_dssp CTTTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCS----------EEEEEEESSSS
T ss_pred CccccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCC----------ChheeecCCCC
Confidence 1 111122333333333333333456677777776543221 122222221110 01111111123
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCC
Q 010884 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 283 (498)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~ 283 (498)
.+.....+.+++...+..+..|||.+...+..+.+.|++.|+
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 163 RECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp HHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCC
Confidence 344566677788776534567889888888899999988774
No 333
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=65.75 E-value=4.4 Score=33.27 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=32.4
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCC-ceEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l~ 293 (498)
+..++||||.+-..+...+..|.+.|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 457899999998889999999999999 5889999974
No 334
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=65.49 E-value=6 Score=30.95 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.5
Q ss_pred cCCccEEEEeCccchHHHHHHHHHhCCCceEeecCCCC
Q 010884 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (498)
Q Consensus 256 ~~~~~~IVf~~t~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (498)
.+..+++|||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34678999999988899999999999986678889874
No 335
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.26 E-value=5.2 Score=37.87 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
..+++.+|+|+|||....
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997653
No 336
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=65.21 E-value=3.6 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+-.|+-+.+.+|.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446777889999999999754
No 337
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=65.17 E-value=4.6 Score=39.07 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.3
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
.++.++.|.+ ++..++||+|||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445667876 466789999999764
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.14 E-value=3.3 Score=40.32 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+.-+++.+|||+|||...
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446889999999999643
No 339
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.10 E-value=3.7 Score=34.65 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
-+++.+|.|+|||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997654
No 340
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=65.06 E-value=5.4 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.2
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
-+++.+|+|+|||...-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999976543
No 341
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=65.04 E-value=4.8 Score=39.05 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=17.9
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
++.++.|.+ ++..++||+|||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678876 566789999999764
No 342
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=64.96 E-value=4.8 Score=39.30 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.0
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
++.++.|.+ ++..++||+|||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 445667876 566789999999764
No 343
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=64.92 E-value=46 Score=30.26 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECccc-ccChhhHHHHHhhhhcCCccEEEEecc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEA 167 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~-v~t~~~~~~l~~~~~~~~l~~iViDEa 167 (498)
.++....+.+++.|.....................+.... ++-++..|.. -.....+..+. ...+-+|++|-.
T Consensus 22 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~----~~~iPvV~~~~~ 95 (291)
T 3l49_A 22 KAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQK--PDAIIEQLGNLDVLNPWLQKIN----DAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHC--CSEEEEESSCHHHHHHHHHHHH----HTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChhhhHHHHHHHH----HCCCcEEEecCC
Confidence 3455555666777887777766555544444444444433 4444433321 01111222222 223667777753
Q ss_pred cc--ccccCCCChHH-HHHHHHHHHh-CCCCCEEEEeecCChHH----HHHHHHHhCCCCCeEEecCCCCCceEEEEEee
Q 010884 168 HC--ISSWGHDFRPS-YRKLSSLRNY-LPDVPILALTATAAPKV----QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239 (498)
Q Consensus 168 H~--i~~~g~~fr~~-~~~l~~l~~~-~~~~~~l~lSAT~~~~~----~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~ 239 (498)
.. +..-+.|.... +.....+... .....+.+++....... ..-+.+.+.-.....+.... .+ ....
T Consensus 96 ~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~---~~---~~~~ 169 (291)
T 3l49_A 96 TPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPE---LR---DVIP 169 (291)
T ss_dssp CTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSC---BC---CCSS
T ss_pred CCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeee---cc---CCCC
Confidence 21 11111222222 3333334442 45666777766543322 11222223211111111000 00 0001
Q ss_pred cchhhHHHHHHHHHHhcCC--ccEEEEeCccchHHHHHHHHHhCCC
Q 010884 240 DLLDDAYADLCSVLKANGD--TCAIVYCLERTTCDELSAYLSAGGI 283 (498)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~--~~~IVf~~t~~~~~~l~~~L~~~g~ 283 (498)
...+.....+.+++...+. .+..|||.+...+..+.+.|++.|+
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 170 NTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp SHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 1223445667777877651 5677899999999999999999887
No 344
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.86 E-value=4.1 Score=39.31 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.3
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
-+++.+|||+|||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678999999999654
No 345
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=64.86 E-value=4.6 Score=39.49 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=18.3
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+++.++.|.+ ++..++||+|||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445678876 466779999999764
No 346
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.84 E-value=6 Score=39.66 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
.+.+++.+|+|+|||.....
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36799999999999976543
No 347
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=64.73 E-value=24 Score=36.20 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=52.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
....+||+++++.-+......|.+. ++.+..+++......+..+......+. .+++++|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcc
Confidence 4679999999999999999999886 889999999999999999999888876 77877775
No 348
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=64.53 E-value=4.7 Score=37.05 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.|+.+++.++.|+|||....+
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999976544
No 349
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=64.52 E-value=2.6 Score=36.07 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.|.-+.+++|+|+|||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345578899999999975543
No 350
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=64.49 E-value=5.3 Score=38.41 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=20.0
Q ss_pred HHHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 45 DAIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 45 ~~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
..+..++.|.+ ++..++||+|||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667788876 566789999999764
No 351
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=64.39 E-value=4.7 Score=39.96 Aligned_cols=26 Identities=31% Similarity=0.637 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~~ 71 (498)
+++.++.|.+ ++..+.||+|||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3455678875 5667899999997743
No 352
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=64.34 E-value=25 Score=36.39 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=52.6
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
....+||+++++.-+......|++. ++.+..+++......+..+......+. .+++++|.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~ 349 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 349 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcc
Confidence 4678999999999999999999886 899999999999999999999888876 77887774
No 353
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=64.27 E-value=5 Score=38.82 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=17.8
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
++.+++|.+ ++..++||+|||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345667876 466789999999764
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.16 E-value=3.1 Score=40.83 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
.|.-+++++|||+|||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999643
No 355
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=64.07 E-value=5.1 Score=38.79 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+++.++.|.+ ++..++||+|||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678876 566789999999764
No 356
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.98 E-value=5.1 Score=38.91 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+++.+++|.+ ++..++||+|||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455678876 466789999999764
No 357
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=63.76 E-value=4.7 Score=39.20 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=17.7
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
++.++.|.+ ++..++||+|||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345667876 566789999999764
No 358
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=63.74 E-value=7.8 Score=43.61 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=56.6
Q ss_pred CCccEEEEeCccchHHHHHHHHHh----CCC----ceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-ccccc-cCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGID-RKD 326 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-~~GiD-~p~ 326 (498)
.+.++||.++|+.-+.++++.+++ .++ .+..+||+.+..++....+.+.+ .+|+|+|.-. -.-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 356799999999999998888875 356 78999999999888777777666 8999999621 11111 457
Q ss_pred ccEEEEeC
Q 010884 327 VRLVCHFN 334 (498)
Q Consensus 327 v~~VI~~~ 334 (498)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77877543
No 359
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.67 E-value=5.6 Score=39.36 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.0
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHHH
Q 010884 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (498)
Q Consensus 46 ~i~~i~~g~dv--lv~apTG~GKTl~~~ 71 (498)
.++.++.|.++ +..++||+|||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 56677788764 667899999997753
No 360
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=63.63 E-value=5.3 Score=38.85 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~dv--lv~apTG~GKTl~~ 70 (498)
+++.++.|.++ +..++||+|||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34556678764 56779999999764
No 361
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.59 E-value=4.1 Score=35.17 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.+..+++.+++|+|||.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345789999999999976543
No 362
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=63.28 E-value=5.3 Score=37.70 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=47.0
Q ss_pred CccEEEEeCccchHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc------c-cccccC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------G-MGIDRK 325 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~------~-~GiD~p 325 (498)
...+||.++|+.-|.+++..+... ++.+..++|+.....+. ....+|||+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988887753 46677777776532211 3456799999632 1 245666
Q ss_pred CccEEEEeC
Q 010884 326 DVRLVCHFN 334 (498)
Q Consensus 326 ~v~~VI~~~ 334 (498)
++++||.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 777777433
No 363
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=63.26 E-value=4.4 Score=31.57 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCCH
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (498)
+..+++|||.+-..+...+..|.+.|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4567999999988899999999999995 8889998743
No 364
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=63.20 E-value=21 Score=38.61 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=51.3
Q ss_pred cCCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-cc-----cc----
Q 010884 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG-----MG---- 321 (498)
Q Consensus 256 ~~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-~~-----~G---- 321 (498)
..+..++|.++|+.-|.+.++.+.. .|+++..+.||++.+.|.... ..+|+|+|+. ++ .+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 3456799999999988877776654 589999999999987665433 2789999974 21 12
Q ss_pred ---cccCCccEEEE
Q 010884 322 ---IDRKDVRLVCH 332 (498)
Q Consensus 322 ---iD~p~v~~VI~ 332 (498)
+...++.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 45567777763
No 365
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=63.15 E-value=5.7 Score=38.79 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+++.++.|.+ ++..++||+|||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678876 566789999999664
No 366
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=63.01 E-value=24 Score=38.23 Aligned_cols=73 Identities=5% Similarity=0.048 Sum_probs=53.4
Q ss_pred HhcCCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-c----------
Q 010884 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F---------- 318 (498)
Q Consensus 254 ~~~~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-~---------- 318 (498)
....+..++|.++|+.-|.+.++.+.. .|+++..+.||++..+|.... ..+|+++|+- +
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 334456799999999988887777654 599999999999987765432 2689999962 2
Q ss_pred -c-cccccCCccEEEE
Q 010884 319 -G-MGIDRKDVRLVCH 332 (498)
Q Consensus 319 -~-~GiD~p~v~~VI~ 332 (498)
+ ..++...+.++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 1 1356677887774
No 367
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=62.98 E-value=4.9 Score=39.07 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=17.8
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
++.++.|.+ ++..++||+|||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 345667876 566789999999764
No 368
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=62.96 E-value=2.4 Score=38.53 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=44.9
Q ss_pred CccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-----cc---ccccC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM---GIDRK 325 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-----~~---GiD~p 325 (498)
+.++||.++|+.-+.++++.+.+. ++.+..++|+.....+ ......+..+|+|+|.-- .. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 446999999999999999888764 6677777765332221 112224567899988321 11 34555
Q ss_pred CccEEEE
Q 010884 326 DVRLVCH 332 (498)
Q Consensus 326 ~v~~VI~ 332 (498)
++++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 5665554
No 369
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=62.75 E-value=4.6 Score=32.71 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (498)
+..++||||.+-..+...+..|.+.|+. +..|.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999985 888999974
No 370
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=62.56 E-value=4.3 Score=34.50 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 56 vlv~apTG~GKTl~~~ 71 (498)
+++.+++|+|||....
T Consensus 5 I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 6789999999997543
No 371
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=62.42 E-value=4.4 Score=35.49 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+++.+|.|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678899999999997543
No 372
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.36 E-value=3.9 Score=41.28 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997654
No 373
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=62.35 E-value=4.9 Score=39.34 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=17.8
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
++.++.|.+ ++..++||+|||.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 344667876 566789999999764
No 374
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=61.91 E-value=4.5 Score=34.77 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
+.-+++.++.|+|||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 375
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=61.75 E-value=8.8 Score=37.50 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
.+.+||+++++.-+....+.|.+.++.+..+++......+..+......+. .+++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECC
Confidence 468999999999999999999999999999999999999988888887765 67777774
No 376
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=61.68 E-value=5.3 Score=38.89 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=18.4
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+++.++.|.+ ++..++||+|||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3455667876 566789999999764
No 377
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=61.42 E-value=3.3 Score=35.57 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.|.-+++.++.|||||.....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345678999999999976543
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=60.89 E-value=4.8 Score=38.64 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
..+++.+|+|+|||....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999976543
No 379
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.88 E-value=5.8 Score=39.36 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=19.8
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
.++.++.|.+ ++..++||+|||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5677888876 466779999999764
No 380
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=60.73 E-value=5.9 Score=38.93 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+++.++.|.+ ++..++||+|||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455678875 566789999999764
No 381
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=60.62 E-value=5.8 Score=32.46 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (498)
+..+++|||.+-..+...+..|.+.|+. +..|.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3567999999988899999999999995 888999874
No 382
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=60.52 E-value=7 Score=33.92 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHhHhcCCCeEEEeCcH
Q 010884 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~ 87 (498)
++|.+++|||||.-+.--+.. +..++++.+-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999544332333 4566666653
No 383
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=60.47 E-value=1.1e+02 Score=28.63 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc
Q 010884 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (498)
Q Consensus 90 L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (498)
+.....+.+++.|.....................+......++-++..|..-.....+..+ ....+-+|++|-.-.
T Consensus 22 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~----~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 22 YSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLS----QGSGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHH----TTSCCEEEEEESCCC
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHH----HhCCCcEEEEcCCCC
Confidence 3444445566678887777666555544444444444211255555545222222222222 223477788875322
Q ss_pred c-----------------cccCCC-ChHHHHHHHHHHHhC-----CC-CCEEEEeecCChHHH----HHHHHHhCCCCCe
Q 010884 170 I-----------------SSWGHD-FRPSYRKLSSLRNYL-----PD-VPILALTATAAPKVQ----KDVMESLCLQNPL 221 (498)
Q Consensus 170 i-----------------~~~g~~-fr~~~~~l~~l~~~~-----~~-~~~l~lSAT~~~~~~----~~i~~~l~~~~~~ 221 (498)
- ..-+.| +...+.....|.+.. .. ..+++++........ .-+.+.+.-....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~ 177 (350)
T 3h75_A 98 LDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQV 177 (350)
T ss_dssp TTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTE
T ss_pred hHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCe
Confidence 1 111122 223333444455544 13 578888876543221 1122222111100
Q ss_pred EEecCCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 222 VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 222 ~~~~~~~r~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
.+...+......+.....+.++|...+ ....|||.+-..+..+.+.|++.|+.
T Consensus 178 ---------~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 178 ---------HLRQLVYGEWNRERAYRQAQQLLKRYP-KTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp ---------EEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ---------EEEEEeeCCCcHHHHHHHHHHHHHhCC-CcCEEEECChHHHHHHHHHHHHcCCC
Confidence 111111112223445666777787764 45788999999999999999998875
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.44 E-value=6.7 Score=36.33 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
+.+++.+|+|+|||....
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 348999999999997544
No 385
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=60.42 E-value=6.1 Score=37.79 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
...+++.||+|+|||....
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997654
No 386
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.38 E-value=4.3 Score=34.54 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
|.-+++.+|.|+|||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4467889999999997553
No 387
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=60.30 E-value=6 Score=39.68 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=17.7
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
++.++.|.+ +|..+.||+|||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344567876 566789999999764
No 388
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=60.13 E-value=4.4 Score=40.04 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHHH
Q 010884 56 CFCLMPTGGGKSMCY 70 (498)
Q Consensus 56 vlv~apTG~GKTl~~ 70 (498)
+++.+|||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 578899999999654
No 389
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=59.99 E-value=3.6 Score=37.04 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.5
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
.|+-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666788999999999654
No 390
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=59.75 E-value=7.6 Score=40.68 Aligned_cols=26 Identities=31% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHcCCCEEEEcCCCchHHHHHHH
Q 010884 47 IQAVLSGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 47 i~~i~~g~dvlv~apTG~GKTl~~~l 72 (498)
-..+..++.+++.+|+|+|||..+..
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHHHH
Confidence 34556788999999999999976543
No 391
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=59.31 E-value=4.4 Score=33.83 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=12.6
Q ss_pred CEEEEcCCCchHHHH
Q 010884 55 DCFCLMPTGGGKSMC 69 (498)
Q Consensus 55 dvlv~apTG~GKTl~ 69 (498)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999965
No 392
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=59.27 E-value=5.5 Score=38.88 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=19.4
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
.+..++.|.+ ++..++||+|||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667788876 466789999999764
No 393
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.19 E-value=11 Score=35.92 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHHH
Q 010884 56 CFCLMPTGGGKSMCY 70 (498)
Q Consensus 56 vlv~apTG~GKTl~~ 70 (498)
+.+.||+|+|||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999654
No 394
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=59.15 E-value=5.1 Score=38.87 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHHH
Q 010884 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 46 ~i~~i~~g~d--vlv~apTG~GKTl~~~ 71 (498)
.++.+++|.+ ++..++||+|||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4555667876 4667899999997753
No 395
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=59.10 E-value=5 Score=32.79 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=32.1
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (498)
...+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3567999999988888999999999995 889999874
No 396
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.95 E-value=4.7 Score=35.31 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|.|+|||....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45567889999999997653
No 397
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=58.88 E-value=5.4 Score=34.90 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.-+++.|+.|+|||....
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 398
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=58.79 E-value=22 Score=35.09 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=48.1
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecC--------CCCHHHHHHHHHHHhcCCCcccEEEEC
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS--------TQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~t 137 (498)
...++||.++++.-+....+.|...|+.+..+++ ......+..+......+. .+++++|
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~vLv~T 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE--FNVLVAT 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS--CSEEEEC
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC--ceEEEEC
Confidence 5789999999999999999999999999999998 666677777888777765 6777777
No 399
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=58.72 E-value=1e+02 Score=27.63 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.+.....+.+.+.|.....................+.... ++-++..|... ......+.. ..+-+|++|..-
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~--~~~~~~l~~----~~iPvV~i~~~~ 95 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN--PQTVQEILH----QQMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC--HHHHHHHHT----TSSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc--HHHHHHHHH----CCCCEEEEeccc
Confidence 4455555666778888777766655555455555555544 44444443322 333333322 246778887532
Q ss_pred c---ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCC-hHH-HHHHHHHhCCCCCeEEecCCCCCceEEEEEeec-ch
Q 010884 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA-PKV-QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-LL 242 (498)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~-~~~-~~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~-~~ 242 (498)
. +..-+.|.+..-..+.+.+.......+.+++.... ... ..........-... +. +.+.... ..
T Consensus 96 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~--------~~--~~~~~~~~~~ 165 (276)
T 3jy6_A 96 DACPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDV--------DV--LEVSESSYNH 165 (276)
T ss_dssp TTCSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEE--------EE--EEECSSSCCH
T ss_pred CCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhC--------Cc--EEEeccccCC
Confidence 1 11112333333344444444446677888887664 222 22122111111000 11 1111110 22
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
......+.+++.. .+.+..|||.+...+..+.+.|++.|+.
T Consensus 166 ~~~~~~~~~~l~~-~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 166 SEVHQRLTQLITQ-NDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp HHHHHHHHHHHHS-SSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred cHHHHHHHHHHhc-CCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 3345666666644 3567889999999999999999988765
No 400
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=58.70 E-value=5.1 Score=38.79 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=18.0
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHHH
Q 010884 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 47 i~~i~~g~d--vlv~apTG~GKTl~~~ 71 (498)
++.++.|.+ ++..++||+|||.+..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344567776 5667899999997753
No 401
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=58.21 E-value=16 Score=35.14 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred CCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc------ccccccCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~------~~GiD~p~ 326 (498)
.+.++||.|+++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.-. ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356799999999999988888765 4688999999998776554433 35799999421 12345667
Q ss_pred ccEEEEeC
Q 010884 327 VRLVCHFN 334 (498)
Q Consensus 327 v~~VI~~~ 334 (498)
+++||.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 88888544
No 402
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=57.87 E-value=6.9 Score=38.07 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.0
Q ss_pred HHH-cCCC--EEEEcCCCchHHHHHH
Q 010884 49 AVL-SGRD--CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 49 ~i~-~g~d--vlv~apTG~GKTl~~~ 71 (498)
.++ .|.+ ++..++||+|||.+..
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEe
Confidence 344 3766 5888999999997653
No 403
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=57.55 E-value=4.4 Score=39.53 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 404
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=57.28 E-value=5.8 Score=38.98 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=21.7
Q ss_pred HHHHHHHH--------HHHcCCC--EEEEcCCCchHHHHH
Q 010884 41 DKQLDAIQ--------AVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 41 ~~Q~~~i~--------~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
.-|.+++. .++.|.+ ++..++||+|||.+.
T Consensus 77 ~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 77 STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 45777665 3567776 566789999999764
No 405
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=57.17 E-value=5.8 Score=35.26 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
.-+.+.+|+|+|||...-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999976543
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=56.93 E-value=4.7 Score=34.50 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
-.++++|+|+|||...-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 45789999999997543
No 407
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=56.86 E-value=6.2 Score=34.04 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999654
No 408
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=56.78 E-value=1.1e+02 Score=27.50 Aligned_cols=180 Identities=9% Similarity=0.048 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.+.....+.+.+.|.....................+.... ++-++..|.... ......+.. ..+-+|++|...
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiIi~~~~~~-~~~~~~l~~----~~iPvV~~~~~~ 102 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQ--IGGIILLYSREN-DRIIQYLHE----QNFPFVLIGKPY 102 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTC--CCEEEESCCBTT-CHHHHHHHH----TTCCEEEESCCS
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEEeCCCCC-hHHHHHHHH----CCCCEEEECCCC
Confidence 3445555667778887776655544444344455554443 555555543322 223333322 236778887532
Q ss_pred c----ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH----HHHHHHhCCCCCeEEecCCCCCceEEEEEeec
Q 010884 169 C----ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240 (498)
Q Consensus 169 ~----i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i~~~l~~~~~~~~~~~~~r~ni~~~v~~~~ 240 (498)
. +..-+.|....-..+...+.......+.+++........ .-+.+.+.-.... . .+... .....
T Consensus 103 ~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~-----~-~~~~~--~~~~~ 174 (292)
T 3k4h_A 103 DRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIV-----L-PKEYI--LHFDF 174 (292)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCC-----C-CGGGE--EECCS
T ss_pred CCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCC-----C-ChheE--EecCC
Confidence 1 222223433333344333333466678888876543221 1122222111100 0 00111 11112
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
........+.+++... +.+..|||.+...+..+.+.|++.|+.
T Consensus 175 ~~~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 175 SRESGQQAVEELMGLQ-QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp SHHHHHHHHHHHHTSS-SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHcCC-CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 2234566677777654 345678898888888999999887754
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=56.73 E-value=6.8 Score=33.27 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.9
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
.+++.+|.|+|||.....
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 588999999999976543
No 410
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=56.44 E-value=8.1 Score=31.40 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (498)
+..++||||.+=..+...+..|.+.|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567999999988888999999999995 888999984
No 411
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=56.39 E-value=30 Score=37.73 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=52.8
Q ss_pred HhcCCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-cc---------
Q 010884 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG--------- 319 (498)
Q Consensus 254 ~~~~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-~~--------- 319 (498)
....+..++|.++|+.-|.+.++.+.. .|+++..+.|+++..+|.... ..+|+++|+. ++
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~ 221 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMA 221 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhh
Confidence 344456799999999888777776654 699999999999987776543 2689999963 21
Q ss_pred ---cccccCCccEEEE
Q 010884 320 ---MGIDRKDVRLVCH 332 (498)
Q Consensus 320 ---~GiD~p~v~~VI~ 332 (498)
..++...+.++|.
T Consensus 222 ~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 222 HSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred ccHhhhccCCCCEEEE
Confidence 1355667777774
No 412
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=56.28 E-value=4.9 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
|.-+.+.+|+|+|||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778999999999643
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=56.09 E-value=8 Score=36.82 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHH-hHhcCCCeEEEeCc
Q 010884 56 CFCLMPTGGGKSMCYQI-PALAKPGIVLVVSP 86 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l-~~l~~~~~~lvl~P 86 (498)
+++.++.|+|||...-. ..+..+.++.|+.|
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 57899999999965432 22233344555544
No 414
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=55.82 E-value=9.9 Score=33.25 Aligned_cols=20 Identities=15% Similarity=-0.228 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
+.-+.+.+++|+|||....+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577899999999975443
No 415
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.75 E-value=7.7 Score=33.84 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=24.1
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCEEEEeecC
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 203 (498)
...+++++||+..+......| ...|..+... ..++++-|.|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~---~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLF---IQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHH---HHHHHHHHHC--SSCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccHHH---HHHHHHHHhC--CCcEEEEEeec
Confidence 446899999986664322223 3445555553 34556556664
No 416
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=55.72 E-value=6.5 Score=34.70 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=13.9
Q ss_pred EEEEcCCCchHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l 72 (498)
+++.+|.|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976543
No 417
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=55.38 E-value=7.8 Score=31.94 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCCc-eEeecCCCC
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (498)
+..++||||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3567999999988899999999999985 788888864
No 418
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=55.09 E-value=6.6 Score=33.85 Aligned_cols=20 Identities=20% Similarity=0.229 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.+.-+++.++.|+|||....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999997554
No 419
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=54.93 E-value=6.2 Score=38.61 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=16.9
Q ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Q 010884 48 QAVLSGRD--CFCLMPTGGGKSMCY 70 (498)
Q Consensus 48 ~~i~~g~d--vlv~apTG~GKTl~~ 70 (498)
+.++.|.+ ++..++||+|||.+.
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCCceEEEEeCCCCCCCceEe
Confidence 34457766 566789999999764
No 420
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=54.91 E-value=6.8 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.-+++.+++|||||....
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997654
No 421
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=54.69 E-value=5.8 Score=34.88 Aligned_cols=18 Identities=17% Similarity=-0.201 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+.-+.+.+|+|+|||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445678999999999754
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=54.68 E-value=42 Score=33.07 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
-++++++.|+|||..+.
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997554
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=54.60 E-value=6.9 Score=32.95 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+.+++.++.|||||.+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5688999999999986654
No 424
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=54.54 E-value=6.8 Score=33.70 Aligned_cols=18 Identities=17% Similarity=-0.018 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.-+++.++.|+|||....
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997543
No 425
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=54.22 E-value=7.1 Score=34.47 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l 72 (498)
+++.+|.|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999976543
No 426
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=54.21 E-value=6.8 Score=35.02 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
+.-+++.+++|+|||....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997654
No 427
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=54.03 E-value=9.1 Score=33.04 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=16.8
Q ss_pred HHcCCCEEEEcCCCchHHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~~ 71 (498)
+..+.-+++.+++|+|||....
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3345678899999999997543
No 428
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=54.00 E-value=7.4 Score=32.79 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
+-+++.++.|+|||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999976543
No 429
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.95 E-value=8.6 Score=33.60 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=34.7
Q ss_pred CccEEEEeCccchHHH-HHHHHHh---CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc
Q 010884 258 DTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~-l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a 317 (498)
..++||.|+++.-+.+ +.+.+.+ .++.+..++|+.....+...+. +..+|+|+|..
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5679999999988777 5555543 4778889998765433221111 23678888853
No 430
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=53.79 E-value=5.2 Score=41.89 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
++++.+|+|+|||..+.
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999997543
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=53.59 E-value=7.5 Score=33.23 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~l 72 (498)
.-+++.+++|+|||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578999999999976543
No 432
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=53.38 E-value=19 Score=33.21 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHcC-----CCEEEEc-CCCchHHHHHHH--hHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 010884 46 AIQAVLSG-----RDCFCLM-PTGGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (498)
Q Consensus 46 ~i~~i~~g-----~dvlv~a-pTG~GKTl~~~l--~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~~ 105 (498)
.++.++.| ..+++.+ |.|+|||+++++ ..+.++.++++++-.-.. .+..+.++.+|++.
T Consensus 9 ~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~-~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 9 ELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL-QLIIRILSRFGVDV 75 (260)
T ss_dssp HHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCH-HHHHHHHHHTTCCH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCH-HHHHHHHHHcCCCH
Confidence 35566654 4577774 555555555543 446677788887643333 45666777777653
No 433
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=53.23 E-value=8.4 Score=38.92 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.++++.+|+|+|||....
T Consensus 202 ~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999997653
No 434
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=53.20 E-value=6.1 Score=35.06 Aligned_cols=19 Identities=16% Similarity=0.016 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
|.-+.+.+|+|+|||....
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567889999999996543
No 435
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=53.01 E-value=7.3 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.2
Q ss_pred EEEEcCCCchHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 56 vlv~apTG~GKTl~~~ 71 (498)
+++.++.|+|||....
T Consensus 4 I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997543
No 436
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=53.00 E-value=1.2e+02 Score=26.63 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=74.7
Q ss_pred cCCCCCCHHHHHHHHHHHc--C-C--CEEEEcCCCchHHHHHHHhHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc---e
Q 010884 34 FGHAQFRDKQLDAIQAVLS--G-R--DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA---G 105 (498)
Q Consensus 34 fg~~~~~~~Q~~~i~~i~~--g-~--dvlv~apTG~GKTl~~~l~~l~~~~~~lvl~P~~~L~~q~~~~l~~~gi~---~ 105 (498)
.|+....|.+.+.+..+.. + + .-++-..||+|-+..++...+...+.++.+=.....+....+.+...|.. +
T Consensus 32 ~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i 111 (221)
T 3dr5_A 32 FGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRV 111 (221)
T ss_dssp TTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGE
T ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcE
Confidence 5888889999998887653 2 2 26778899999988777666655666666666666655555666666664 4
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecccc
Q 010884 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (498)
.+..+.... ....+. ...++++++....-..+.++..+.+.... =+++|+|++..
T Consensus 112 ~~~~gda~~-----~l~~~~--~~~fD~V~~d~~~~~~~~~l~~~~~~Lkp--GG~lv~dn~~~ 166 (221)
T 3dr5_A 112 RFLLSRPLD-----VMSRLA--NDSYQLVFGQVSPMDLKALVDAAWPLLRR--GGALVLADALL 166 (221)
T ss_dssp EEECSCHHH-----HGGGSC--TTCEEEEEECCCTTTHHHHHHHHHHHEEE--EEEEEETTTTG
T ss_pred EEEEcCHHH-----HHHHhc--CCCcCeEEEcCcHHHHHHHHHHHHHHcCC--CcEEEEeCCCC
Confidence 444432111 111111 23478877765432223344444333322 25788887753
No 437
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=52.88 E-value=10 Score=46.79 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.9
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010884 50 VLSGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 50 i~~g~dvlv~apTG~GKTl~~ 70 (498)
+..++.++++||||+|||+..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 346789999999999999765
No 438
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=52.85 E-value=9.1 Score=39.51 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
+..+++.+|+|+|||.....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999976543
No 439
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=52.82 E-value=7.2 Score=35.34 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|.|+|||...-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 45678899999999996543
No 440
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=52.65 E-value=29 Score=38.01 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHhcCCccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc
Q 010884 253 LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (498)
Q Consensus 253 l~~~~~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a 317 (498)
+....+..++|.++|+.-|.+.++.+.. .|+++..+.|+++.++|.... ..+|+++|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 3444456799999999888777766654 699999999999988776654 3789999964
No 441
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=52.60 E-value=12 Score=34.33 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.-+++.|++|+|||....
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 347889999999997543
No 442
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.42 E-value=7.7 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~ 71 (498)
-+++.++.|+|||....
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997654
No 443
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.36 E-value=7.9 Score=33.84 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 56 vlv~apTG~GKTl~~~l 72 (498)
+.+.+|.|+|||...-+
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976543
No 444
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=52.25 E-value=6.1 Score=33.89 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=12.9
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
-+.+++++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999654
No 445
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=52.13 E-value=6.8 Score=37.16 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+++|+|+|||...-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHH
Confidence 45678899999999997543
No 446
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=52.11 E-value=5.9 Score=38.68 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
-.++.+|||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578999999999653
No 447
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=52.06 E-value=33 Score=38.13 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=53.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEEC
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t 137 (498)
...++||+++++.-+......|.. .|+.+..+++..+...+..+......+...++++++|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 578999999999999999999984 6999999999999999999999988876568888887
No 448
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=52.00 E-value=16 Score=33.72 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCccEEEEeCccchHHHHHHHHHhCCC-ceEeecCCCCH
Q 010884 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (498)
Q Consensus 257 ~~~~~IVf~~t~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 294 (498)
+..++||||.+-..+...+..|...|+ ++..|.||+..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 457899999998889999999999999 48999999864
No 449
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=51.97 E-value=84 Score=31.50 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=64.8
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcC
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~ 157 (498)
++..+|+...+.-+....+.|.+.+..+..+++......+..+......+. .+++++|+.++.+ -.+..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~~~---------GiDip 415 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVFST---------GISVK 415 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHHHH---------SCCCC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChhhc---------ccccc
Confidence 444444444466667788888888889999999999988888888888775 6787777544432 12334
Q ss_pred CccEEEEeccccccccCCCChHHHHHHHHHHHhCC
Q 010884 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (498)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 192 (498)
.+++||+..+. |+ ....+..+++..+..+
T Consensus 416 ~v~~vi~~~~~----~s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 416 NLHHVVLAHGV----KS--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp SEEEEEESSCC----CS--CCHHHHHHHHHHTTTC
T ss_pred cCcEEEEeCCC----CC--HHHHHHHHhcccccCC
Confidence 47788876655 33 3444566666655443
No 450
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=51.19 E-value=1.6e+02 Score=27.65 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=18.9
Q ss_pred CEEEEcCCCchHHHHHH-HhH-h-cCCCeEEEe
Q 010884 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVV 84 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~~-l-~~~~~~lvl 84 (498)
-+.+.+|+|+|||.+.. +.. + ..+++++++
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46788999999996543 222 2 235566555
No 451
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=51.14 E-value=8.4 Score=35.19 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l 72 (498)
.+.-+.+.+|+|+|||...-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678899999999976544
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=51.08 E-value=8.7 Score=34.05 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 56 vlv~apTG~GKTl~~~ 71 (498)
+++.+|+||||+....
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999996443
No 453
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=51.03 E-value=8.5 Score=39.37 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
.+.++++.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4578999999999999654
No 454
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=50.90 E-value=8.2 Score=33.64 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.3
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
.+.+.++.|+|||...-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 367899999999976543
No 455
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=50.89 E-value=21 Score=35.50 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=44.1
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
.+.+||++|++.-++...+.|++.+..+..+++. .+..+......+. .+++++|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECc
Confidence 5689999999999999999999999999999875 3444556666665 78887775
No 456
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=50.44 E-value=8.9 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.-+++.++.|+|||....
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999997654
No 457
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=50.41 E-value=16 Score=38.77 Aligned_cols=72 Identities=8% Similarity=0.141 Sum_probs=50.6
Q ss_pred ccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCc-----cccc-c-ccCCc
Q 010884 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (498)
Q Consensus 259 ~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a-----~~~G-i-D~p~v 327 (498)
.++||.++|+.-+.+.++.+.+. ++.+..++|+.+...+...+ . ...+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999998888888877764 88999999998654332221 1 24789999953 2223 3 56778
Q ss_pred cEEEEeC
Q 010884 328 RLVCHFN 334 (498)
Q Consensus 328 ~~VI~~~ 334 (498)
++||.-.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8888544
No 458
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.36 E-value=8.9 Score=34.34 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
.+-+++.+|+|+||+....
T Consensus 29 ~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CEEEEEECCTTCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457789999999986543
No 459
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.34 E-value=9.8 Score=33.74 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
+.-+++.+|.|+|||.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999975543
No 460
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.10 E-value=83 Score=29.32 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=18.7
Q ss_pred CEEEEcCCCchHHHHHH-HhHh--cCCCeEEEeC
Q 010884 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~-l~~l--~~~~~~lvl~ 85 (498)
-+.+.+++|+|||.... +... ..+++++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46678999999996443 2222 2355555543
No 461
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=49.89 E-value=1.5e+02 Score=26.95 Aligned_cols=173 Identities=12% Similarity=0.042 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.++....+.+.+.|.....................+.... ++-++..|-... ......+.. ..+-+|++|...
T Consensus 44 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~-~~~~~~l~~----~~iPvV~i~~~~ 116 (305)
T 3huu_A 44 DVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKS--VDGFILLYSLKD-DPIEHLLNE----FKVPYLIVGKSL 116 (305)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTC--CSEEEESSCBTT-CHHHHHHHH----TTCCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCcCC-cHHHHHHHH----cCCCEEEECCCC
Confidence 3444555566677877766655544443344445554443 555555543322 223333322 236778887543
Q ss_pred c---ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH----HHHHHH---hCCCCCeEEecCCCCCceEEEEEe
Q 010884 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMES---LCLQNPLVLKSSFNRPNLFYEVRY 238 (498)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i~~~---l~~~~~~~~~~~~~r~ni~~~v~~ 238 (498)
. +..-+.|....-....+.+.......+.+++........ .-+... .++.... +..
T Consensus 117 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--------------~~~ 182 (305)
T 3huu_A 117 NYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--------------VVI 182 (305)
T ss_dssp SSTTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--------------EEE
T ss_pred cccCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--------------EEe
Confidence 1 111223333333333333333466778888876543221 111222 2221111 111
Q ss_pred ecchhhHHHHHHHH-HHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 239 KDLLDDAYADLCSV-LKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 239 ~~~~~~~~~~l~~~-l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
.+... ....+.++ |... +.+.-|||.+...+..+.+.|++.|+.
T Consensus 183 ~~~~~-~~~~~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 183 KSMND-LRDFIKQYCIDAS-HMPSVIITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp CSHHH-HHHHC---------CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred cCcHH-HHHHHHHhhhcCC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 22212 34455566 6543 355788999988888899999887754
No 462
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.88 E-value=8.9 Score=34.74 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
+.-+++.+|.|+|||...-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 463
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=49.84 E-value=12 Score=31.36 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.3
Q ss_pred CccEEEEeCccc---------hHHHHHHHHHhCCCceEeecCCC
Q 010884 258 DTCAIVYCLERT---------TCDELSAYLSAGGISCAAYHAGL 292 (498)
Q Consensus 258 ~~~~IVf~~t~~---------~~~~l~~~L~~~g~~~~~~h~~l 292 (498)
..++||||.+-. .+..++..|...|+.+..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 568999998873 57889999999999999999986
No 464
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=49.69 E-value=1.5e+02 Score=26.93 Aligned_cols=178 Identities=11% Similarity=-0.008 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEecc
Q 010884 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (498)
Q Consensus 88 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEa 167 (498)
..++....+.+.+.|.....................+.... ++-++..|.....+..+..+. . .+-+|++|..
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~~~~~~~~l~---~--~iPvV~i~~~ 103 (303)
T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGR--VDGVLLQRREDFDDDMLAAVL---E--GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCS--SSEEEECCCTTCCHHHHHHHH---T--TSCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CcEEEEecCCCCcHHHHHHHh---C--CCCEEEECCc
Confidence 34556666677788888877766655444444555555544 555665554333221233332 2 4778888743
Q ss_pred cc--ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH----HHH---HHHhCCCCCeEEecCCCCCceEEEEEe
Q 010884 168 HC--ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDV---MESLCLQNPLVLKSSFNRPNLFYEVRY 238 (498)
Q Consensus 168 H~--i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i---~~~l~~~~~~~~~~~~~r~ni~~~v~~ 238 (498)
.. +..-+.|....-....+.+.......+.+++........ .-+ ....++... +... ...
T Consensus 104 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---------~~~~--~~~ 172 (303)
T 3kke_A 104 VPGRVGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSE---------AAWV--VDA 172 (303)
T ss_dssp CTTCCCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCC---------GGGE--EEC
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCC---------cceE--Eec
Confidence 21 111122333333333333333466778888776542211 111 122222111 0010 111
Q ss_pred ecchhhHHHHHHHH-----HHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 239 KDLLDDAYADLCSV-----LKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 239 ~~~~~~~~~~l~~~-----l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
....+.....+.++ +... +.+..|||.+...+..+.+.|++.|+.
T Consensus 173 ~~~~~~~~~~~~~l~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 173 GWEADAGSAALNTLYRGANLGKP-DGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTST-TSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCChHHHHHHHHHhcchhhhcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 11223344556666 5543 456788999988888888999887654
No 465
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=49.43 E-value=9.3 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.1
Q ss_pred EEEEcCCCchHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 56 vlv~apTG~GKTl~~~ 71 (498)
+++.++.|+|||....
T Consensus 3 I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6789999999997543
No 466
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=49.36 E-value=13 Score=31.34 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
.|.-+.+.+|.|+|||...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556788999999999643
No 467
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=49.35 E-value=9.7 Score=31.87 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 56 vlv~apTG~GKTl~~~ 71 (498)
+++.++.|+|||....
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEESCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997654
No 468
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=49.15 E-value=1.4e+02 Score=29.17 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=27.4
Q ss_pred cccEEEECcc------cccChhhHHHHHhhhhcCCccEEEEecccc
Q 010884 130 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (498)
Q Consensus 130 ~~~~l~~tpe------~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (498)
...+++++|- .+.+++++..+.+......+ ++|+||+|.
T Consensus 201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~ 245 (453)
T 2cy8_A 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-LFILDEVIS 245 (453)
T ss_dssp GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecCcc
Confidence 4678888875 23356677777666555443 799999997
No 469
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=49.13 E-value=8.9 Score=34.75 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~ 70 (498)
.|.-+.+.+|+|+|||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999644
No 470
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=49.12 E-value=10 Score=33.80 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|.|+|||...-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778899999999997543
No 471
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=48.77 E-value=9.3 Score=33.10 Aligned_cols=18 Identities=22% Similarity=0.027 Sum_probs=14.5
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010884 55 DCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 55 dvlv~apTG~GKTl~~~l 72 (498)
-+.+.+++|||||....+
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999976544
No 472
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.70 E-value=7.5 Score=33.94 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
+.-+++.++.|+|||...
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445788999999999754
No 473
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=48.69 E-value=1.6e+02 Score=26.87 Aligned_cols=183 Identities=14% Similarity=0.066 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccC-hhhHHHHHhhhhcCCccEEEEec
Q 010884 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDE 166 (498)
Q Consensus 88 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDE 166 (498)
..+.....+.+++.|.....................+.... ++-++..|..... ...+..+.. ..+-+|++|.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~----~~iPvV~~~~ 91 (313)
T 3m9w_A 18 QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRG--VDVLVIIPYNGQVLSNVVKEAKQ----EGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEEECSSTTSCHHHHHHHHT----TTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChhhhHHHHHHHHH----CCCeEEEECC
Confidence 34556666667778888877776655555555555555444 4555544432211 123333322 2367788875
Q ss_pred ccccc----ccCCCChH-HHHHHHHHHHhCCCCCEEEEeecCChHHH----HHHHHHhCCCCCeEEecCCCCCceEEEEE
Q 010884 167 AHCIS----SWGHDFRP-SYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLKSSFNRPNLFYEVR 237 (498)
Q Consensus 167 aH~i~----~~g~~fr~-~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~~i~~~l~~~~~~~~~~~~~r~ni~~~v~ 237 (498)
...-. .-+.|... .+.....+.+..+...+.+++........ .-+.+.+.-. ...+++.....
T Consensus 92 ~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--------~~~~~~~~~~~ 163 (313)
T 3m9w_A 92 MINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPY--------VDSGKIKVVGD 163 (313)
T ss_dssp CCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHH--------HHTTSEEEEEE
T ss_pred cCCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhh--------ccCCCEEEEee
Confidence 32211 11222232 33334444536677778888876543221 1111211100 00112211110
Q ss_pred --e-ecchhhHHHHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 238 --Y-KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 238 --~-~~~~~~~~~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
. ..........+.++|...++.+..|||.+-..+..+.+.|++.|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 164 QWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp EECGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCT
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 1 1122345666777887764456789999999999999999998864
No 474
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.68 E-value=10 Score=33.61 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
+.-+++.++.|+|||....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3467899999999997543
No 475
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.67 E-value=10 Score=32.88 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.+.-+++.++.|+|||....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568899999999997543
No 476
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=48.64 E-value=9.1 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
++-+++++|+|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457889999999996543
No 477
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=48.56 E-value=8.8 Score=32.69 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCY 70 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~ 70 (498)
|.-+++.++.|+|||...
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 455788999999999754
No 478
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=48.54 E-value=23 Score=30.20 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=12.1
Q ss_pred CEEEEcCCCchHHHH
Q 010884 55 DCFCLMPTGGGKSMC 69 (498)
Q Consensus 55 dvlv~apTG~GKTl~ 69 (498)
-+.+.+++|+|||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356788999999953
No 479
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=48.46 E-value=9.9 Score=33.46 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHH
Q 010884 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 41 ~~Q~~~i~~i~~g~dvlv~apTG~GKTl~~~ 71 (498)
+.+.+. ..+..|.-+++.++.|+|||....
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 344444 223355667889999999996543
No 480
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=48.40 E-value=10 Score=37.08 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|+-+++.+|+|+|||....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34678899999999996543
No 481
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.38 E-value=10 Score=33.02 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
-+++.++.|+|||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 482
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=48.28 E-value=1.6e+02 Score=26.71 Aligned_cols=178 Identities=11% Similarity=-0.006 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhcCCccEEEEeccc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (498)
.++....+.+.+.|.....................+.... ++-++..|.... ... .......+-+|++|...
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~--~~~----~~~~~~~iPvV~~~~~~ 102 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHR--IDGVLYVTMYRR--IVD----PESGDVSIPTVMINCRP 102 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEEEEEEEE--ECC----CCCTTCCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEecCCcc--HHH----HHHHhCCCCEEEECCCC
Confidence 6667777778888988877776655555555555555544 344433332111 111 11112236678887432
Q ss_pred c----ccccCCCChHHHHHHHHHHHhCCCCCEEEEeecCChHHH----H---HHHHHhCCCCC-eEEecCCCCCceEEEE
Q 010884 169 C----ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----K---DVMESLCLQNP-LVLKSSFNRPNLFYEV 236 (498)
Q Consensus 169 ~----i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~----~---~i~~~l~~~~~-~~~~~~~~r~ni~~~v 236 (498)
. +..-+.|....-....+.+.......+.+++........ . +.....++... ..+... .
T Consensus 103 ~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~---------~ 173 (301)
T 3miz_A 103 QTRELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLG---------M 173 (301)
T ss_dssp SSTTSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC---------E
T ss_pred CCCCCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEc---------C
Confidence 1 111122333333333333334566778888876543211 1 11222232211 111110 0
Q ss_pred EeecchhhHH--HHHHHHHHhcCCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 237 RYKDLLDDAY--ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 237 ~~~~~~~~~~--~~l~~~l~~~~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
......+... ..+.+++... +.+.-|||.+...+..+.+.|++.|+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQD-DRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTST-TCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred CCCcCccccHHHHHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 0000111112 4556666543 456788999988899999999988865
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=48.16 E-value=8.2 Score=34.00 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 010884 55 DCFCLMPTGGGKSMCY 70 (498)
Q Consensus 55 dvlv~apTG~GKTl~~ 70 (498)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578999999999654
No 484
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=48.10 E-value=14 Score=32.51 Aligned_cols=35 Identities=23% Similarity=0.082 Sum_probs=24.5
Q ss_pred cCCCEEEEcCCCchHHHHHHHhH----hcCCCeEEEeCcH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPL 87 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~l~~----l~~~~~~lvl~P~ 87 (498)
.|+=.++.+|.|+|||.- ++-+ ...+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHHcCCeEEEEccc
Confidence 355678899999999943 2322 2346788888887
No 485
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=47.99 E-value=9.9 Score=35.99 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=19.9
Q ss_pred CCCEEEEcCCCchHHHHHH-HhHhc--CCCeEEEeC
Q 010884 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~-l~~l~--~~~~~lvl~ 85 (498)
+.-+.+++|+|+|||...- +..+. ..+.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3457789999999996443 22222 345555543
No 486
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.99 E-value=29 Score=32.38 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=51.5
Q ss_pred CccEEEEeCccchHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-----c-cccccCCc
Q 010884 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKDV 327 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-----~-~GiD~p~v 327 (498)
+.++||.++++.-+.++++.+.+ .+..+..+||+.+...... .+. ..+|+|+|.-. . ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 45789999999999999988875 3578899999998766433 232 36799999532 1 22456677
Q ss_pred cEEEEeC
Q 010884 328 RLVCHFN 334 (498)
Q Consensus 328 ~~VI~~~ 334 (498)
++||.-.
T Consensus 131 ~~iViDE 137 (337)
T 2z0m_A 131 EIVIIDE 137 (337)
T ss_dssp SEEEEES
T ss_pred cEEEEEC
Confidence 8877543
No 487
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=47.79 E-value=1.7e+02 Score=26.89 Aligned_cols=188 Identities=14% Similarity=0.065 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccc-cChhhHHHHHhhhhcCCccEEEEecc
Q 010884 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGLLNLVAIDEA 167 (498)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v-~t~~~~~~l~~~~~~~~l~~iViDEa 167 (498)
.+.....+.+++.|.......+.............+.... ++-++..|-.- .....+..+. ...+-+|++|-.
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~--vdgiIi~~~~~~~~~~~~~~~~----~~giPvV~~~~~ 93 (330)
T 3uug_A 20 DDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKG--VKVLVIASIDGTTLSDVLKQAG----EQGIKVIAYDRL 93 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHT--CSEEEECCSSGGGGHHHHHHHH----HTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcC--CCEEEEEcCCchhHHHHHHHHH----HCCCCEEEECCC
Confidence 4555556667778888777776655555444444444433 55555554321 1111222222 223677888743
Q ss_pred ccc----c-ccCCC-ChHHHHHHHHHHHh------CCCCCEEEEeecCChHHH----HHHHHHhCCC---CCeEEecCCC
Q 010884 168 HCI----S-SWGHD-FRPSYRKLSSLRNY------LPDVPILALTATAAPKVQ----KDVMESLCLQ---NPLVLKSSFN 228 (498)
Q Consensus 168 H~i----~-~~g~~-fr~~~~~l~~l~~~------~~~~~~l~lSAT~~~~~~----~~i~~~l~~~---~~~~~~~~~~ 228 (498)
..- . .-+.| +...+.....+... .....+.++++....... .-+...+.-. ....+...
T Consensus 94 ~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~-- 171 (330)
T 3uug_A 94 IRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSG-- 171 (330)
T ss_dssp CCSCTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTC--
T ss_pred CCCCCceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeec--
Confidence 211 0 11112 22333333334442 344567777776543221 1111111100 00111000
Q ss_pred CCceEEEEEeecchhhHHHHHHHHHHhc--CCccEEEEeCccchHHHHHHHHHhCCCc
Q 010884 229 RPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGIS 284 (498)
Q Consensus 229 r~ni~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IVf~~t~~~~~~l~~~L~~~g~~ 284 (498)
..............+.....+.+++..+ ++.+..|||.+-..+..+.+.|++.|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~nd~~A~g~~~al~~~g~~ 229 (330)
T 3uug_A 172 QMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYG 229 (330)
T ss_dssp CCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEECSSHHHHHHHHHHHHHTTCS
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCchHHHHHHHHHHcCCC
Confidence 0000000000111234566677777764 4556789999999999999999998875
No 488
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=47.61 E-value=12 Score=37.27 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcc
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe 139 (498)
.+.+||++|++.-++...+.|++.++.+..+++. .+..+......+. .+++++|..
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g~--~~vLVaT~v 232 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQKK--PDFILATDI 232 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------CC--CSEEEESSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCCC--ceEEEECCh
Confidence 5789999999999999999999999999998883 2334455555554 788888753
No 489
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.39 E-value=17 Score=38.51 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc------CCceeEecCC--------CCHHHHHHHHHHHhcCCCcccEEEECc
Q 010884 78 PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSST--------QTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (498)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~l~~~------gi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~tp 138 (498)
.+++||.++++..+....+.|... |+.+..+++. .+...+..+......+. .++|++|.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEcc
Confidence 688999999999999999999886 8999999998 88999999998888765 67766663
No 490
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=47.38 E-value=9.6 Score=35.48 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|.|+|||...-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45667899999999997543
No 491
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=47.06 E-value=10 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.090 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 010884 56 CFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 56 vlv~apTG~GKTl~~~ 71 (498)
+++.++.|+|||....
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997554
No 492
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=46.82 E-value=10 Score=34.59 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|.|+|||...-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997543
No 493
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=46.76 E-value=1.6e+02 Score=31.71 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=75.8
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecCCCCHHHHHHHHHHHhcCCCcccEEEECcccccChhhHHHHHhhhhc
Q 010884 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (498)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tpe~v~t~~~~~~l~~~~~~ 156 (498)
.+.++||.+..+..+.-....|...|+....+.+..+...+..+......+.....++++|.... ..| .++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag-g~G--------lNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG-GLG--------INL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH-TTT--------CCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc-cCC--------CCc
Confidence 45689999999998888888898899999999999999999988888776543333343333222 112 112
Q ss_pred CCccEEEEeccccccccCCCChHHHHHHHHHHHhCCCCCE----EEEeecCChHHHHHHHHHhCCCCCe
Q 010884 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI----LALTATAAPKVQKDVMESLCLQNPL 221 (498)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~----l~lSAT~~~~~~~~i~~~l~~~~~~ 221 (498)
...+.||+=+ +.|+ .....+.++++.+.-...++ +....|....+.......+.+....
T Consensus 642 ~~a~~VI~~D----~~wn--p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~v 704 (800)
T 3mwy_W 642 MTADTVVIFD----SDWN--PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAI 704 (800)
T ss_dssp TTCCEEEESS----CCSC--SHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC--
T ss_pred cccceEEEec----CCCC--hhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 2244444321 2355 33334445444433222222 3344455555555555555554443
No 494
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=46.66 E-value=9.2 Score=36.16 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=19.9
Q ss_pred CCEEEEcCCCchHHHHHH-HhHhc--CCCeEEEeC
Q 010884 54 RDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~-l~~l~--~~~~~lvl~ 85 (498)
.-+.+++|+|+|||...- +..+. ..+.+++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346789999999996443 22221 355665553
No 495
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=46.65 E-value=10 Score=35.09 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010884 52 SGRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 52 ~g~dvlv~apTG~GKTl~~~ 71 (498)
.|.-+.+.+|.|+|||...-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 46678899999999997543
No 496
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=46.46 E-value=11 Score=34.21 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
..+++.+|.|+|||....
T Consensus 30 ~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999997554
No 497
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=46.21 E-value=10 Score=32.56 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~ 71 (498)
+.-+++.++.|+|||....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4457889999999997543
No 498
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=46.19 E-value=9 Score=32.56 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=11.9
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010884 53 GRDCFCLMPTGGGKSMCYQI 72 (498)
Q Consensus 53 g~dvlv~apTG~GKTl~~~l 72 (498)
+.-+++.++.|+|||.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678899999999976544
No 499
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.19 E-value=14 Score=39.90 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010884 54 RDCFCLMPTGGGKSMCYQ 71 (498)
Q Consensus 54 ~dvlv~apTG~GKTl~~~ 71 (498)
.++++.+|+|+|||....
T Consensus 202 ~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997654
No 500
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=46.11 E-value=11 Score=41.83 Aligned_cols=73 Identities=8% Similarity=0.056 Sum_probs=47.1
Q ss_pred CccEEEEeCccchHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHHcCCCeEEEEeCcc-----ccc-c-ccCC
Q 010884 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (498)
Q Consensus 258 ~~~~IVf~~t~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlvaT~a~-----~~G-i-D~p~ 326 (498)
+.++||.++++.-+.+++..+.+. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 567999999998888887777663 899999999987655422221 236799999531 222 2 4566
Q ss_pred ccEEEEeC
Q 010884 327 VRLVCHFN 334 (498)
Q Consensus 327 v~~VI~~~ 334 (498)
+++||.-.
T Consensus 372 ~~liViDE 379 (936)
T 4a2w_A 372 FTLMIFDE 379 (936)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 78888543
Done!